Query 009360
Match_columns 536
No_of_seqs 273 out of 955
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 12:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1386 Nucleoside phosphatase 100.0 9E-113 2E-117 893.0 33.1 459 73-534 3-500 (501)
2 PF01150 GDA1_CD39: GDA1/CD39 100.0 1.2E-91 2.6E-96 753.7 -0.9 390 76-475 5-426 (434)
3 KOG1385 Nucleoside phosphatase 100.0 8.7E-78 1.9E-82 617.0 26.4 366 74-471 62-445 (453)
4 COG5371 Golgi nucleoside dipho 100.0 4E-41 8.6E-46 348.9 3.1 371 78-466 3-429 (549)
5 COG5371 Golgi nucleoside dipho 100.0 1.2E-38 2.6E-43 330.5 14.9 386 78-467 119-532 (549)
6 TIGR03706 exo_poly_only exopol 99.7 2.1E-16 4.6E-21 162.8 14.8 154 82-256 3-158 (300)
7 COG0248 GppA Exopolyphosphatas 99.6 1.7E-15 3.6E-20 164.8 15.4 158 81-258 5-164 (492)
8 PRK10854 exopolyphosphatase; P 99.6 3.8E-15 8.3E-20 164.0 15.7 161 77-258 10-172 (513)
9 PRK11031 guanosine pentaphosph 99.6 3.7E-15 8E-20 163.5 15.4 158 79-256 6-165 (496)
10 PF02541 Ppx-GppA: Ppx/GppA ph 99.2 1.6E-11 3.5E-16 125.4 8.9 99 124-240 33-131 (285)
11 PRK15080 ethanolamine utilizat 97.3 0.00074 1.6E-08 68.8 8.7 132 74-239 19-153 (267)
12 PRK09472 ftsA cell division pr 94.5 0.48 1E-05 51.4 12.8 62 79-142 8-71 (420)
13 PRK13929 rod-share determining 92.1 11 0.00025 39.4 18.2 122 124-282 73-194 (335)
14 TIGR02529 EutJ ethanolamine ut 91.6 0.69 1.5E-05 46.4 8.0 124 84-240 2-127 (239)
15 smart00268 ACTIN Actin. ACTIN 91.0 1.8 4E-05 45.7 11.0 87 130-240 75-162 (373)
16 TIGR01174 ftsA cell division p 91.0 3.1 6.8E-05 44.2 12.8 61 82-145 3-66 (371)
17 COG0849 ftsA Cell division ATP 90.8 0.81 1.8E-05 49.8 8.0 73 80-159 7-83 (418)
18 KOG2517 Ribulose kinase and re 90.7 0.9 1.9E-05 50.5 8.4 86 78-163 5-90 (516)
19 cd00012 ACTIN Actin; An ubiqui 90.6 3.5 7.7E-05 43.6 12.7 21 221-241 143-163 (371)
20 PRK05183 hscA chaperone protei 90.5 11 0.00024 43.1 17.3 40 192-239 180-219 (616)
21 CHL00094 dnaK heat shock prote 89.5 13 0.00029 42.5 16.9 20 220-239 186-205 (621)
22 PRK13410 molecular chaperone D 88.6 16 0.00035 42.3 16.8 40 192-239 166-205 (668)
23 PF11104 PilM_2: Type IV pilus 88.5 4.1 8.8E-05 42.8 11.1 87 170-280 135-222 (340)
24 PF00370 FGGY_N: FGGY family o 88.2 1.4 2.9E-05 43.8 7.0 62 80-143 1-63 (245)
25 TIGR02350 prok_dnaK chaperone 86.9 20 0.00044 40.6 16.2 20 220-239 182-201 (595)
26 TIGR01991 HscA Fe-S protein as 86.8 22 0.00047 40.6 16.3 40 192-239 160-199 (599)
27 PF00022 Actin: Actin; InterP 86.6 8.8 0.00019 40.7 12.4 116 130-283 74-189 (393)
28 PRK13411 molecular chaperone D 86.5 26 0.00057 40.4 17.0 19 220-238 185-203 (653)
29 PTZ00400 DnaK-type molecular c 85.6 19 0.0004 41.7 15.2 40 192-239 205-244 (663)
30 PRK13927 rod shape-determining 84.0 20 0.00044 37.3 13.4 18 222-239 149-166 (334)
31 PF06723 MreB_Mbl: MreB/Mbl pr 83.7 56 0.0012 34.5 16.5 94 124-239 70-163 (326)
32 PRK01433 hscA chaperone protei 83.7 57 0.0012 37.3 17.7 40 192-239 172-211 (595)
33 PRK13930 rod shape-determining 83.4 33 0.00072 35.6 14.7 44 222-282 153-196 (335)
34 TIGR00241 CoA_E_activ CoA-subs 83.3 7 0.00015 39.2 9.3 109 80-239 1-109 (248)
35 PTZ00281 actin; Provisional 81.9 20 0.00043 38.3 12.6 35 221-255 149-183 (376)
36 PRK10719 eutA reactivating fac 81.7 21 0.00045 39.6 12.6 36 220-257 145-180 (475)
37 PF06277 EutA: Ethanolamine ut 81.6 21 0.00046 39.5 12.6 155 80-256 4-176 (473)
38 TIGR01175 pilM type IV pilus a 81.0 37 0.00079 35.4 14.1 21 80-100 4-24 (348)
39 PTZ00466 actin-like protein; P 80.5 19 0.00041 38.6 11.9 87 130-240 87-173 (380)
40 PTZ00004 actin-2; Provisional 78.9 26 0.00056 37.4 12.3 19 222-240 150-168 (378)
41 PTZ00452 actin; Provisional 78.7 26 0.00057 37.4 12.3 104 129-256 79-183 (375)
42 PTZ00186 heat shock 70 kDa pre 76.9 75 0.0016 36.8 15.9 20 220-239 211-230 (657)
43 PF15232 DUF4585: Domain of un 75.7 1.4 3.1E-05 36.2 1.2 18 514-531 26-43 (75)
44 COG4972 PilM Tfp pilus assembl 72.8 24 0.00052 37.3 9.5 20 223-242 195-214 (354)
45 COG2971 Predicted N-acetylgluc 69.4 12 0.00025 39.1 6.4 161 77-282 3-167 (301)
46 PF00012 HSP70: Hsp70 protein; 68.3 41 0.00089 37.8 11.2 120 129-282 117-237 (602)
47 PRK00290 dnaK molecular chaper 66.9 92 0.002 35.7 13.7 93 125-239 110-203 (627)
48 PLN03184 chloroplast Hsp70; Pr 66.2 94 0.002 36.1 13.7 89 129-239 154-242 (673)
49 PTZ00280 Actin-related protein 65.7 69 0.0015 34.6 11.8 19 222-240 161-179 (414)
50 COG1070 XylB Sugar (pentulose 64.1 21 0.00045 39.8 7.6 63 78-143 3-68 (502)
51 PF12273 RCR: Chitin synthesis 62.3 7.7 0.00017 35.2 3.2 8 490-497 2-9 (130)
52 PF01869 BcrAD_BadFG: BadF/Bad 62.1 10 0.00023 38.2 4.5 72 83-163 2-74 (271)
53 PRK04123 ribulokinase; Provisi 59.9 28 0.0006 39.1 7.7 62 79-141 3-71 (548)
54 PRK13928 rod shape-determining 59.2 1.3E+02 0.0028 31.4 12.2 20 221-240 147-166 (336)
55 TIGR01234 L-ribulokinase L-rib 58.7 28 0.00061 39.0 7.5 61 80-143 2-76 (536)
56 PLN02295 glycerol kinase 57.1 28 0.00061 38.7 7.1 60 80-143 1-63 (512)
57 PRK10331 L-fuculokinase; Provi 57.0 31 0.00068 37.9 7.4 62 79-142 2-66 (470)
58 PF13941 MutL: MutL protein 57.0 28 0.00061 38.5 6.9 75 82-164 3-80 (457)
59 TIGR02628 fuculo_kin_coli L-fu 56.8 24 0.00053 38.7 6.5 61 80-144 2-67 (465)
60 PRK10939 autoinducer-2 (AI-2) 54.1 34 0.00074 38.1 7.2 60 79-142 3-67 (520)
61 PF14450 FtsA: Cell division p 53.2 8 0.00017 34.4 1.6 60 82-142 2-62 (120)
62 smart00842 FtsA Cell division 52.1 61 0.0013 30.9 7.7 61 82-145 2-65 (187)
63 PTZ00294 glycerol kinase-like 50.0 48 0.001 36.8 7.5 60 80-143 3-65 (504)
64 PRK11678 putative chaperone; P 49.6 1.8E+02 0.0038 32.2 11.7 128 129-278 131-260 (450)
65 PF14574 DUF4445: Domain of un 48.1 15 0.00032 40.1 3.0 24 79-102 1-24 (412)
66 PTZ00009 heat shock 70 kDa pro 47.0 2.7E+02 0.0058 32.2 13.1 95 125-239 117-212 (653)
67 TIGR01311 glycerol_kin glycero 44.6 51 0.0011 36.5 6.6 60 79-142 1-63 (493)
68 PRK13917 plasmid segregation p 43.9 1.7E+02 0.0038 30.9 10.2 47 221-282 185-231 (344)
69 PF01708 Gemini_mov: Geminivir 42.5 43 0.00094 28.7 4.3 12 14-25 1-12 (91)
70 PRK15027 xylulokinase; Provisi 42.4 65 0.0014 35.5 7.0 59 81-143 2-63 (484)
71 TIGR01314 gntK_FGGY gluconate 41.4 66 0.0014 35.7 6.9 62 80-143 1-63 (505)
72 PF11359 gpUL132: Glycoprotein 40.6 24 0.00053 34.8 2.9 38 493-531 60-97 (235)
73 COG0554 GlpK Glycerol kinase [ 39.6 54 0.0012 36.4 5.6 61 78-142 4-67 (499)
74 TIGR03123 one_C_unchar_1 proba 38.8 98 0.0021 32.7 7.3 105 123-241 33-148 (318)
75 PRK09213 pur operon repressor; 37.4 58 0.0013 33.5 5.2 67 118-184 26-95 (271)
76 TIGR00904 mreB cell shape dete 37.4 2.1E+02 0.0046 29.7 9.6 19 221-239 150-168 (333)
77 COG1069 AraB Ribulose kinase [ 37.1 1.2E+02 0.0026 34.2 7.8 62 78-142 2-66 (544)
78 TIGR01315 5C_CHO_kinase FGGY-f 36.5 79 0.0017 35.5 6.6 58 81-142 2-62 (541)
79 PF15330 SIT: SHP2-interacting 35.9 31 0.00067 30.6 2.6 22 493-515 3-24 (107)
80 PF15102 TMEM154: TMEM154 prot 35.7 23 0.0005 33.1 1.8 28 493-520 62-89 (146)
81 COG0443 DnaK Molecular chapero 35.2 5.3E+02 0.012 29.5 13.0 126 124-283 96-222 (579)
82 COG1924 Activator of 2-hydroxy 32.6 2.4E+02 0.0051 30.7 8.8 116 76-239 132-247 (396)
83 TIGR03192 benz_CoA_bzdQ benzoy 32.6 4.7E+02 0.01 27.3 11.0 110 79-238 32-142 (293)
84 TIGR02627 rhamnulo_kin rhamnul 32.1 60 0.0013 35.4 4.7 59 82-141 1-63 (454)
85 PRK00047 glpK glycerol kinase; 31.2 1E+02 0.0023 34.0 6.4 60 79-142 5-67 (498)
86 PF06024 DUF912: Nucleopolyhed 29.9 19 0.00042 31.4 0.3 32 486-518 61-92 (101)
87 PF08841 DDR: Diol dehydratase 27.9 1.1E+02 0.0024 31.9 5.3 55 170-240 98-153 (332)
88 COG4819 EutA Ethanolamine util 26.9 6.6E+02 0.014 27.1 10.7 153 80-256 6-178 (473)
89 PF13268 DUF4059: Protein of u 25.2 89 0.0019 25.7 3.3 24 498-521 17-40 (72)
90 PF10726 DUF2518: Protein of f 23.9 1.1E+02 0.0023 28.7 4.0 19 71-89 63-81 (145)
91 PF10954 DUF2755: Protein of u 23.9 94 0.002 26.7 3.3 28 489-517 73-100 (100)
92 TIGR01743 purR_Bsub pur operon 22.7 1.3E+02 0.0029 30.9 4.8 67 118-184 24-93 (268)
93 KOG0104 Molecular chaperones G 22.5 2E+02 0.0043 34.0 6.4 74 204-283 196-275 (902)
94 COG3894 Uncharacterized metal- 22.1 90 0.0019 35.0 3.6 27 76-102 161-187 (614)
95 COG4820 EutJ Ethanolamine util 21.9 2E+02 0.0042 28.8 5.5 61 207-275 132-192 (277)
96 PF08777 RRM_3: RNA binding mo 20.8 59 0.0013 28.5 1.6 42 161-203 42-85 (105)
97 PTZ00288 glucokinase 1; Provis 20.5 4E+02 0.0087 29.1 8.2 63 77-144 24-86 (405)
No 1
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9e-113 Score=892.96 Aligned_cols=459 Identities=37% Similarity=0.657 Sum_probs=390.2
Q ss_pred CCCCCceEEEEEEcCCcceEEEEEEEeCC--CCcccc---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCC
Q 009360 73 FPPSSVKYGVLLDGGSTGTRIHVFSYDTE--TNHFDF---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAF 147 (536)
Q Consensus 73 ~~~~~~~y~iVIDaGSsgtRl~Vy~~~~~--~~~~~~---~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~ 147 (536)
..+++.+|||||||||||||||||+|+.+ +|.+++ ....+|++||||+|+++|++|.++|.||||+|+++||+++
T Consensus 3 ~~~~~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~IPk~~ 82 (501)
T KOG1386|consen 3 TEPPNLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHIPKEK 82 (501)
T ss_pred CCCCcceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhCCHhh
Confidence 35678999999999999999999999984 333333 2345788999999999999999999999999999999999
Q ss_pred CCCceEEEEeechhcccChhhHHHHHHHHHHhhc-ccCccccCCceEEcCCcccchhHHHHHHHhhccCCC----C-CCC
Q 009360 148 WADTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGG----D-PSE 221 (536)
Q Consensus 148 ~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~-~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~----~-~~~ 221 (536)
|++|||||+||||||+||.++|++||+.++++++ .++|.|+++|||||||+|||+|||||+||++|+|+. + +.+
T Consensus 83 h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~ 162 (501)
T KOG1386|consen 83 HKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKE 162 (501)
T ss_pred cCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcc
Confidence 9999999999999999999999999999999998 689999999999999999999999999999999987 3 678
Q ss_pred ceEEEeeCCceeEEEeecC---CCCCccceeeEEec--C-eeEEEEEeecccccHHHHHHHHHHHhccCCccch--hhcc
Q 009360 222 TTGIIELGGASVQVTFVSD---EPLPQEFSRTLKFG--N-VTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTA--AESL 293 (536)
Q Consensus 222 t~G~lDlGGaStQItf~~~---~~~~~~~~~~~~l~--g-~~y~vYthSfLgyG~~~Ar~~~l~~l~~~~~~~~--~~~~ 293 (536)
|+|+||||||||||||++. +..++++..++++| + ++|+||+|||||||+|+|++|++++|+++..++. +..+
T Consensus 163 T~G~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G~~~~~~Y~ly~~SfLgyG~N~A~~ry~~~Ll~~~~n~n~~~~~~ 242 (501)
T KOG1386|consen 163 TFGALDLGGASTQITFEPPNQQEEVPKENLQTINYGNDNLVKYRLYVHSFLGYGANEALDRYLAMLLEKLPNKNGLTGLT 242 (501)
T ss_pred eeeeEecCCceeEEEEecCccccccchhhhhheecCCCCceEEEEEEEeecccchhHHHHHHHHHHHHhccccccccccc
Confidence 9999999999999999988 55678888889888 2 7899999999999999999999999997654432 3345
Q ss_pred CCCcccCCCCCCCccceec-----cCCCccccccc-ceecccCCChHhHHHHHHHHhhcCCCCCCCCcccCCCcccCccc
Q 009360 294 QKGTYIDPCSPKGYLHHVE-----SSPGSLAAKID-LSTLQAGGNFSECRSAALTLLQNGKEKCSYKSCYLGSTFMPKLR 367 (536)
Q Consensus 294 ~~~~~~~PC~p~Gy~~~~~-----~~~~~~~~~~~-~~~~~GtGn~~~C~~~v~~ll~~~~~~C~~~~Csf~gv~qP~l~ 367 (536)
.+..+.|||+|+||+..++ .++|....++. .+.++|+|||++|++.+.++|+. ++|.+++|+|||||||+++
T Consensus 243 ~~~~~~DPC~p~Gy~~~~~~~~~~~~~~~e~~~~~~~~~~~GtGn~~~C~~~v~~ll~~--~~C~~~~Csf~gv~~P~i~ 320 (501)
T KOG1386|consen 243 GDNPLTDPCLPRGYNYDVNLSDVYSSPCPEESKNGQSIELQGTGNWSQCRSAVLPLLNF--KSCPYQPCSFNGVFQPPIQ 320 (501)
T ss_pred cCcccCCCCCCCCcceeeeeccccccccccccCCCceEEEecCCCHHHHHHHHHHhcCC--CCCCCcccccCCEeCCCcC
Confidence 5667899999999999987 45664433333 48889999999999999999995 8999999999999999999
Q ss_pred cccccccceeeee-cccCCcccccHHHHHHHHhcccccchHHHHhh-CCCCChhhHHhhhhhhHHHHHHhhhccCCCCC-
Q 009360 368 GKFLATENFFHTS-KFFGLHQRAFLSHLLMAGEQFCGEDWSKLKKK-HQSLDDEDLLRYCFSSAYIVALLHDSLGISLD- 444 (536)
Q Consensus 368 g~F~A~S~fy~t~-~fl~l~~~~~l~~~~~aa~~~C~~~w~~l~~~-~~~~~~~~l~~~Cf~~~Yi~~LL~dGygf~~d- 444 (536)
++|||||+|||+. +||+|++++++++|.+++++||+++|++++++ ||..+++++.+|||+++||++||||||+|+.+
T Consensus 321 f~f~~fSef~y~t~~~f~lgg~y~~~~f~~~~~~fC~~~Ws~l~~~~y~~~dE~~L~~yCFkaawi~slLh~Gf~~~~~~ 400 (501)
T KOG1386|consen 321 FEFYGFSEFFYTTNDVFGLGGKYSLDKFTKAGREFCGKEWSTLRTRKYPSADEEYLKTYCFKAAWILSLLHEGFGFPKDQ 400 (501)
T ss_pred ceeEEEEeeeeehhhhhcccceecHHHHHHHHHHHhhchHHHHHhccCCCCCHHHHHHHhhhHHHHHHHHhcccCCCccc
Confidence 9999999999955 69999999999999999999999999999997 99999999999999999999999999999998
Q ss_pred CcceeecccccccccccchhHHHHHhccc--ccccCCCccccccCCCch-----h--HHHHHHHHHHHHHHHHHH--hhh
Q 009360 445 DERIGFANQVENIPLDWALGAFILQSTAV--LDELHPSWISTIISDDSP-----T--LLSLIALSIMLMVIAWSI--SKW 513 (536)
Q Consensus 445 ~~~I~f~~ki~~~ev~WtLGa~ll~~~~~--~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~--~~~ 513 (536)
+.+|+|++||++.|++|||||+++.+++. ++.+.+...+... ..|. . +++.+++++++++++..+ .++
T Consensus 401 ~~~i~~~~kv~~~el~WtLG~~lY~~~f~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~r~ 479 (501)
T KOG1386|consen 401 WESIQFASKVAGSELQWTLGAILYMASFIPLIPLEQPLLRRSSH-SSSRFLSFVFLLLFFTVCILVLLVALLPSYLRFRR 479 (501)
T ss_pred ccccchhhhhcCcccchhhhhHHHHhhcccCCcccchhhccccc-cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 89999999999999999999888777543 3444433222221 1222 1 222222333333333333 445
Q ss_pred ccCCcceeeeecCceEEEeec
Q 009360 514 RKPQLKTIYDLEKGRYIISRV 534 (536)
Q Consensus 514 r~~~~k~~~d~~~~~~~~~~~ 534 (536)
++++.++++|+++|+++++|+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~ 500 (501)
T KOG1386|consen 480 KRPYNFLRTDSRYGALFLEEF 500 (501)
T ss_pred hhhhhhhhhhccccchhhhhc
Confidence 556678999999999999875
No 2
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=100.00 E-value=1.2e-91 Score=753.69 Aligned_cols=390 Identities=38% Similarity=0.688 Sum_probs=327.0
Q ss_pred CCceEEEEEEcCCcceEEEEEEEeCC-CCcc---c-c---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCC
Q 009360 76 SSVKYGVLLDGGSTGTRIHVFSYDTE-TNHF---D-F---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAF 147 (536)
Q Consensus 76 ~~~~y~iVIDaGSsgtRl~Vy~~~~~-~~~~---~-~---~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~ 147 (536)
.+.+|+|||||||||||+|||+|... ...+ . . +....+++||||+|+++|+++.++|.+|+++|++.||.++
T Consensus 5 ~~~~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~~~~~~~~~~~l~~ll~~a~~~ip~~~ 84 (434)
T PF01150_consen 5 ESRKYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSFADNPEKAAESLQPLLDFAKSVIPKSQ 84 (434)
T ss_dssp EEEEEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHhCCChHHHHHHHHHHHHHHHhhCCHHH
Confidence 45789999999999999999999762 1111 1 0 1235678999999999999999999999999999999999
Q ss_pred CCCceEEEEeechhcccChhhHHHHHHHHHHhhc-ccCccccCCceEEcCCcccchhHHHHHHHhhccCCCC-----CCC
Q 009360 148 WADTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGD-----PSE 221 (536)
Q Consensus 148 ~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~-~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~-----~~~ 221 (536)
|+.|||||+||||||+|+.+++++||+.|++.++ .++|.|.++|||||||+|||+|+||||||++|+|... ..+
T Consensus 85 ~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~ 164 (434)
T PF01150_consen 85 HSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSN 164 (434)
T ss_dssp SCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS
T ss_pred hCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCc
Confidence 9999999999999999999999999999999987 4899999999999999999999999999999999876 568
Q ss_pred ceEEEeeCCceeEEEeecCCC------CC-c-cceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhccCCccchhhcc
Q 009360 222 TTGIIELGGASVQVTFVSDEP------LP-Q-EFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESL 293 (536)
Q Consensus 222 t~G~lDlGGaStQItf~~~~~------~~-~-~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~~~~~~~~~~~~ 293 (536)
|+|+||||||||||||.+++. .. . ++...+++++++|+||+|||||||+++||+++++.+++.... .
T Consensus 165 t~g~lDlGGaStQIaf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vys~SyLgyG~~~Ar~~~l~~l~~~~~~-----~ 239 (434)
T PF01150_consen 165 TVGALDLGGASTQIAFEPSEGTFSNSSLEDINSYIRRLKLGGKNYDVYSHSYLGYGLNEARKRYLASLVSNSSK-----K 239 (434)
T ss_dssp -EEEEEE-SSEEEEEEEETTTTTSCTTSSGCE-GCCCCCCTTCCCEEEEEEEETCSHHHHHHHHHHHHTTSTTT-----E
T ss_pred eEEEEecCCcceeeeeccCcccccccccccccchheeeccccceeEEEEeecccccHHHHHHHHHHHHhhhccc-----c
Confidence 999999999999999999822 11 1 246788999999999999999999999999999999874211 1
Q ss_pred CCCcccCCCCCCCccceeccCCCcccccccceecccCCChHhHHHHHHHHhhcCCCCCCCCcccCCCcccCc---ccccc
Q 009360 294 QKGTYIDPCSPKGYLHHVESSPGSLAAKIDLSTLQAGGNFSECRSAALTLLQNGKEKCSYKSCYLGSTFMPK---LRGKF 370 (536)
Q Consensus 294 ~~~~~~~PC~p~Gy~~~~~~~~~~~~~~~~~~~~~GtGn~~~C~~~v~~ll~~~~~~C~~~~Csf~gv~qP~---l~g~F 370 (536)
....+.|||+|+||..+++...+ ......+.|+|||++|++.++++++. +..|..++|+|+++++|+ ..+.|
T Consensus 240 ~~~~i~~PC~p~G~~~~~~~~~~----~~~~~~~~Gtg~~~~C~~~i~~~l~~-~~~c~~~~C~~~~v~~p~~~~~~~~f 314 (434)
T PF01150_consen 240 SSGVIPNPCLPKGYNQSWTYSDV----EYDVITLTGTGDFEKCRELIRKLLNK-NANCEYSPCSFNGVYQPSIPSGNGFF 314 (434)
T ss_dssp ETCEEEETTS-BT-EEESCSCHE----ESSCCEBTTHHHHHHCCTTSHHHHT---SHHHHHHHHTTTTBTTSHHHHHHSE
T ss_pred cccccCCccccCCccceEEeccc----ccccccCCCCCchHHHHHHHHHHhhc-cccCCCCCCccCCccCCcccccccce
Confidence 23568999999999987652111 11236789999999999999999986 589999999999999999 56789
Q ss_pred ccccceeeeecccCCcccc---cHHHHHHHHhcccccchHHHHhhCCCCChhh----HHhhhhhhHHHHHHhhhccCCCC
Q 009360 371 LATENFFHTSKFFGLHQRA---FLSHLLMAGEQFCGEDWSKLKKKHQSLDDED----LLRYCFSSAYIVALLHDSLGISL 443 (536)
Q Consensus 371 ~A~S~fy~t~~fl~l~~~~---~l~~~~~aa~~~C~~~w~~l~~~~~~~~~~~----l~~~Cf~~~Yi~~LL~dGygf~~ 443 (536)
+++|.||++++||++.+.. ++.+|.++++++|+++|+++++.++..++++ +..+||+++||++||++||||+.
T Consensus 315 ~a~s~fy~~~~~l~l~~~~~~~~l~~~~~aa~~~Cs~~w~~i~~~~~~~~~~~~~~~l~~~Cf~~~yi~sLL~~Gyg~~~ 394 (434)
T PF01150_consen 315 YAFSYFYYTADFLGLVSPSDTYTLSDFKSAAKEFCSKSWSEIKAEFPGNKYKYLPDELPYYCFDAAYIYSLLHDGYGFDD 394 (434)
T ss_dssp TTEEEEEEHHHHHHHHHHHHTSSSSHHHHHHHHHHTSSHHHHHHHSCCSSHEEEESHHHHHHHHHHHHCCCCHTTS--TH
T ss_pred eEEEEEEEeehhcCcCCccccccchHHHHHHHHHHcchHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhcccCCCC
Confidence 9999999999999998876 9999999999999999999999887655444 45899999999999999999996
Q ss_pred CCcceeecccccccccccchhHHHHHhccccc
Q 009360 444 DDERIGFANQVENIPLDWALGAFILQSTAVLD 475 (536)
Q Consensus 444 d~~~I~f~~ki~~~ev~WtLGa~ll~~~~~~~ 475 (536)
++++|++++||++.+++|||||+|..++.++.
T Consensus 395 ~~~~i~~~~kI~~~ev~WtLGa~l~~~~~~~~ 426 (434)
T PF01150_consen 395 DSQEITFVKKINGQEVSWTLGAALYLINALPE 426 (434)
T ss_dssp HHHHCCCHHHHHTEEEECHHHCCCCHTTTSEE
T ss_pred CCceEEeeeeeCCcccCcHHHHHHHHhhccch
Confidence 55899999999999999999987766666553
No 3
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.7e-78 Score=616.97 Aligned_cols=366 Identities=33% Similarity=0.570 Sum_probs=314.0
Q ss_pred CCCCceEEEEEEcCCcceEEEEEEEeCCC----CccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCC
Q 009360 74 PPSSVKYGVLLDGGSTGTRIHVFSYDTET----NHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWA 149 (536)
Q Consensus 74 ~~~~~~y~iVIDaGSsgtRl~Vy~~~~~~----~~~~~~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~ 149 (536)
.....+|+|||||||||||||||++.... |.++ .+....++||||+|++||++++++|++||+.|++.||.+.|+
T Consensus 62 s~~~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le-~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~~~~~ 140 (453)
T KOG1385|consen 62 SSIKRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELE-HELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPREHWK 140 (453)
T ss_pred CCCceEEEEEEecCCCcceEEEEEeccCCCCCCchhH-HHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCHhHhc
Confidence 34458999999999999999999998742 2332 344567899999999999999999999999999999999999
Q ss_pred CceEEEEeechhcccChhhHHHHHHHHHHhhc-ccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEee
Q 009360 150 DTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIEL 228 (536)
Q Consensus 150 ~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~-~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDl 228 (536)
+|||.+.||||+|+||.+.++.||++||+.|+ +++|...++.|.||+|.|||+|+|+|+||++|+++.+.++|+|++||
T Consensus 141 kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DL 220 (453)
T KOG1385|consen 141 KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDL 220 (453)
T ss_pred cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEc
Confidence 99999999999999999999999999999998 79999888889999999999999999999999999877899999999
Q ss_pred CCceeEEEeecCCC----CCccceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhccCCccchhhccCCCcccCCCCC
Q 009360 229 GGASVQVTFVSDEP----LPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESLQKGTYIDPCSP 304 (536)
Q Consensus 229 GGaStQItf~~~~~----~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~~~~~~~~~~~~~~~~~~~PC~p 304 (536)
|||||||+|.|..+ .++.+.+.+.++|++|+||+|||||||+.+||..++. ...+ .....++.+||+|
T Consensus 221 GGGSTQi~f~p~~e~~~~~~~~y~~~l~~~~~ky~LythSyLg~GL~aAR~~il~-~~e~-------~~~~h~l~spCl~ 292 (453)
T KOG1385|consen 221 GGGSTQITFLPTFEDTLEAPVPYKRELDFFGRKYKLYTHSYLGLGLKAARLAILK-VLEN-------EETTHQLISPCLP 292 (453)
T ss_pred CCceEEEEEecCcccccccCCcceeeeeecCceEEEEEecccchHHHHHHHhhhh-hhcc-------ccccceeeccccC
Confidence 99999999998754 3445888999999999999999999999999999998 4432 1124568899999
Q ss_pred CCccceeccCCCcccccccceeccc----CCChHhHHHHHHHHhhcCCCCCCCCcccCCCcccCccccccccccceeeee
Q 009360 305 KGYLHHVESSPGSLAAKIDLSTLQA----GGNFSECRSAALTLLQNGKEKCSYKSCYLGSTFMPKLRGKFLATENFFHTS 380 (536)
Q Consensus 305 ~Gy~~~~~~~~~~~~~~~~~~~~~G----tGn~~~C~~~v~~ll~~~~~~C~~~~Csf~gv~qP~l~g~F~A~S~fy~t~ 380 (536)
.||..+|... ...+.+.| ..-+++|+..+.+++.. .|.+.+|.|+ ++++|+||.||..+
T Consensus 293 ~~~~~~~~~~-------~~~y~v~~~~s~~~~~E~c~~~~~~~l~~---~~~~~p~~~~-------~~~~y~fSYfyDRa 355 (453)
T KOG1385|consen 293 PGYAGEWEYG-------GVTYKVSGSQSGASLFEQCRGTIDAVLEG---SCVHRPCEFK-------QSDVYLFSYFYDRA 355 (453)
T ss_pred cchhhheeec-------ceEEEecCccCccccchhhHHHHHHHHhc---CccccccccC-------CCcEEEEehhhhhh
Confidence 9999977621 12234444 55689999999999983 7999999998 56899999999988
Q ss_pred cccCCcc-----cccHHHHHHHHhcccccchHHHHhhCCCCChhhHHhhhhhhHHHHHHhhhccCCCCCCcceeeccccc
Q 009360 381 KFFGLHQ-----RAFLSHLLMAGEQFCGEDWSKLKKKHQSLDDEDLLRYCFSSAYIVALLHDSLGISLDDERIGFANQVE 455 (536)
Q Consensus 381 ~fl~l~~-----~~~l~~~~~aa~~~C~~~w~~l~~~~~~~~~~~l~~~Cf~~~Yi~~LL~dGygf~~d~~~I~f~~ki~ 455 (536)
--.|+.+ ...+.||..+|+++|+.- ..+|..+.+.++..|+|++||++||++||||+ |.+.|+.+|||+
T Consensus 356 ~~~G~vd~~~~~~~~v~df~~ka~~~c~~~-----~t~~~~e~~~~P~~ClDL~Y~~sLL~~Gfgi~-dsk~l~l~KKi~ 429 (453)
T KOG1385|consen 356 AEVGLVDPFKGGMLEVADFEKKAEEACRSL-----ETFPLDELSNLPFLCLDLTYIISLLKDGFGIE-DSKVLHLAKKID 429 (453)
T ss_pred hhcCCccCCccccchHHHHHHHHHHHHHhh-----hccCccccccCcHHHHHHHHHHHHHHhhcCCC-CCceeEeeeecC
Confidence 7666643 457899999999999874 34555444667889999999999999999998 678999999999
Q ss_pred ccccccchhHHHHHhc
Q 009360 456 NIPLDWALGAFILQST 471 (536)
Q Consensus 456 ~~ev~WtLGa~ll~~~ 471 (536)
++|++|+||+.+--++
T Consensus 430 ~~Ei~W~LGaa~~~l~ 445 (453)
T KOG1385|consen 430 NIEISWALGAAFELLK 445 (453)
T ss_pred ceEeehhcccchhhhh
Confidence 9999999998765444
No 4
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-41 Score=348.93 Aligned_cols=371 Identities=26% Similarity=0.454 Sum_probs=294.8
Q ss_pred ceEEEEEEcCCcceEEEEEEEeCCC-------C-ccc---c-----ccceeecCCCCcccCCCcchHH-HHHHHHHHHHH
Q 009360 78 VKYGVLLDGGSTGTRIHVFSYDTET-------N-HFD---F-----DLGSMRLNPGLSSYAVNPTNAG-DSLKDLLDFAK 140 (536)
Q Consensus 78 ~~y~iVIDaGSsgtRl~Vy~~~~~~-------~-~~~---~-----~~~~~kv~pGLss~~~~p~~a~-~~l~~ll~~a~ 140 (536)
.+|++||||||||+||+||.|+... | .+. + ..+..|++||||+|..+|+.++ .+++++|++|+
T Consensus 3 ~~~~~~~d~~~s~~~v~~~~w~~~t~Ss~~~~~~si~~~~~~~~~~~~w~~k~~~~is~~~~k~~~~~~~~lkelLdfa~ 82 (549)
T COG5371 3 PRFGIVIDAGSSGSRVHVFKWDQDTESSLHATPQSILQSVTHIHQEPDWTFKLNPGISSFEKKPQDAEKSHLKELLDFAK 82 (549)
T ss_pred chhhhhhhhhcccceEEEEEeccCcccccCCCCccccccccCcccCCccccccCCcccccCCCccccccccccchhhhhh
Confidence 5799999999999999999996521 1 111 1 2356788999999999999886 58999999999
Q ss_pred HhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcc-cCccccCC--ceEEcCCcccchhHHHHHHHhhccCCC
Q 009360 141 RKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRV-SGFRFADD--WATVITGSDEGVYAWIVANYALGTLGG 217 (536)
Q Consensus 141 ~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~-~~F~f~~~--~~~VIsG~eEg~y~Wv~vNyllg~l~~ 217 (536)
..||.+.|+.+|+++.||||||+|+..-|.-+++-+.+.+.. .-|.-.+. -.++|+|+-||.|+|...||+.+.+..
T Consensus 83 ~~IP~k~~~~~P~la~atA~~~lls~Dsq~~s~~~~~qYv~~idagstgsr~~iyqfidge~~~~~~~~~~n~L~~~l~d 162 (549)
T COG5371 83 NIIPEKTMPSLPVLAGATAAMRLLSQDSQPCSLIHLCQYVKMIDAGSTGSRSNIYQFIDGEIEGQYLWLNTNYLEPGLSD 162 (549)
T ss_pred ccCchhhccccceeccccccccccCCCCCchhhHhhhheecccccCCCccceeEEEeecCccCcchhhhhhhhhcccccc
Confidence 999999999999999999999999998888888886665542 22332221 369999999999999999999998876
Q ss_pred CCCCceEEEeeCCceeEEEeecCCC-----CCccce--eeEEecC--eeEEEEEeecccccHHHHHHHHHHHhccCCccc
Q 009360 218 DPSETTGIIELGGASVQVTFVSDEP-----LPQEFS--RTLKFGN--VTYNLYSHSFLHFGQNVAFETLRELLSSGDFNT 288 (536)
Q Consensus 218 ~~~~t~G~lDlGGaStQItf~~~~~-----~~~~~~--~~~~l~g--~~y~vYthSfLgyG~~~Ar~~~l~~l~~~~~~~ 288 (536)
....|+|+.|+||+++||+|+.-.. .|.... .-+++.| +.+.|++..++|||.|+|+.+++..+++..
T Consensus 163 ~d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil--- 239 (549)
T COG5371 163 FDTDTVGFADSGGALLQIAFEFVPSEIRRCMPIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEIL--- 239 (549)
T ss_pred cccccHHHHhhccHHHHhhhccCCHHHhhcCcceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeec---
Confidence 5678999999999999999975432 111111 2334333 589999999999999999999997766421
Q ss_pred hhhccCCCcccCCCCCCCccceeccCCCcccccccceecccCCChHhHHHHHHHHhhcCCCCCCCCcccCCCcccCccc-
Q 009360 289 AAESLQKGTYIDPCSPKGYLHHVESSPGSLAAKIDLSTLQAGGNFSECRSAALTLLQNGKEKCSYKSCYLGSTFMPKLR- 367 (536)
Q Consensus 289 ~~~~~~~~~~~~PC~p~Gy~~~~~~~~~~~~~~~~~~~~~GtGn~~~C~~~v~~ll~~~~~~C~~~~Csf~gv~qP~l~- 367 (536)
....++.+.+||.+.|...... ....+|||+..+|.....+++.+ ...|...+|.|+|++.|.+.
T Consensus 240 --~G~~Eg~~a~~~m~~~ls~~g~-----------~~~~~~T~~v~d~gg~stqll~~-~r~~~~~~~~~DG~h~~~ldf 305 (549)
T COG5371 240 --NGVDEGNLADPCMNRGLSNDGT-----------DAGTHGTGAVVDCGGGSTQLLLK-PRPCSDIPCLFDGGHKPLLDF 305 (549)
T ss_pred --cCccccchhhhhhhhhhccccC-----------CCcccCcccceeccCcceeeeec-CCCCccccccccCcccccccc
Confidence 1223456789999998765432 12347999999999999998886 57999999999999999874
Q ss_pred ----cccccccceeeee-cccCCcccccHHHHHHHHhcccccchHHHH---hhCCCCChhhHHhhhhhhHHHHHHhhhcc
Q 009360 368 ----GKFLATENFFHTS-KFFGLHQRAFLSHLLMAGEQFCGEDWSKLK---KKHQSLDDEDLLRYCFSSAYIVALLHDSL 439 (536)
Q Consensus 368 ----g~F~A~S~fy~t~-~fl~l~~~~~l~~~~~aa~~~C~~~w~~l~---~~~~~~~~~~l~~~Cf~~~Yi~~LL~dGy 439 (536)
-+||+.|.++|++ +.+++.+++.+..|...++++|..+|+++- .-+|++++. +.+.||.+.|++++||.|+
T Consensus 306 ~~e~~k~~g~Se~~Y~andv~~~~~~~~~~nflKsv~el~g~s~t~~l~~~~l~~~i~~~-~k~s~~eak~~l~il~~G~ 384 (549)
T COG5371 306 ANEEYKFYGDSELWYTANDVFKKGGSVAFRNFLKSVDELCGDSWTQILSHKELGPSIREN-LKDSCFEAKWVLNILHEGF 384 (549)
T ss_pred CCccceEEeehhhhhhHHHHHhhccceechhHHHHHHHHhcccchhhhcCcccCcccchh-hhhhhhhhhhheeeeeecc
Confidence 3699999999988 588999999999999999999999996552 224666665 7889999999999999998
Q ss_pred CCCCCC-------ccee---------e--cccccccccccchhHH
Q 009360 440 GISLDD-------ERIG---------F--ANQVENIPLDWALGAF 466 (536)
Q Consensus 440 gf~~d~-------~~I~---------f--~~ki~~~ev~WtLGa~ 466 (536)
..|..+ ..|- | .++|...++.||||-.
T Consensus 385 d~p~~s~qcr~l~~~~L~kd~~c~spf~S~~gVeq~k~s~Tl~~~ 429 (549)
T COG5371 385 DNPLESHQCRNLADLILSKDPACHSPFCSFEGVEQTKLSWTLGTS 429 (549)
T ss_pred CCcccchhhhhhhhhhhccccccCCCccccccccccceeeecccc
Confidence 877621 1122 2 4678899999999964
No 5
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=330.54 Aligned_cols=386 Identities=22% Similarity=0.248 Sum_probs=302.3
Q ss_pred ceEEEEEEcCCcceEEEEEEEeCCCC--ccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEE
Q 009360 78 VKYGVLLDGGSTGTRIHVFSYDTETN--HFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRL 155 (536)
Q Consensus 78 ~~y~iVIDaGSsgtRl~Vy~~~~~~~--~~~~~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l 155 (536)
.+|..+|||||+|+|++||++..+++ ... ......+.||+++|..++.++.+++.++++.|.+.+|.+..+++|+-+
T Consensus 119 ~qYv~~idagstgsr~~iyqfidge~~~~~~-~~~~n~L~~~l~d~d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~ 197 (549)
T COG5371 119 CQYVKMIDAGSTGSRSNIYQFIDGEIEGQYL-WLNTNYLEPGLSDFDTDTVGFADSGGALLQIAFEFVPSEIRRCMPIIV 197 (549)
T ss_pred hheecccccCCCccceeEEEeecCccCcchh-hhhhhhhcccccccccccHHHHhhccHHHHhhhccCCHHHhhcCcceE
Confidence 58999999999999999999987542 121 134456789999999999999999999999999999998889999999
Q ss_pred EeechhcccChhhHHHHHHHHHHhhcc-cCccc-cCCceEEcCCcccchhHHHHHHHhhccCCCCC--CCceEEEeeCCc
Q 009360 156 MATAGLRLVDVVVQDKILDSCRRVLRV-SGFRF-ADDWATVITGSDEGVYAWIVANYALGTLGGDP--SETTGIIELGGA 231 (536)
Q Consensus 156 ~ATAGmRlL~~~~~~~il~~v~~~l~~-~~F~f-~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~--~~t~G~lDlGGa 231 (536)
.||||+|++...+...||..+|.-|.+ ++|.- .++.|+|+.|.+||.|+|...||++++.+.+. +.|.+++|+|||
T Consensus 198 ~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d~gg~ 277 (549)
T COG5371 198 TATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVDCGGG 277 (549)
T ss_pred EEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCcccceeccCc
Confidence 999999999999999999999998874 56642 34679999999999999999999999987642 568899999999
Q ss_pred eeEEEeecCCCC------CccceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhccCCccchhhc---cCCCcccCCC
Q 009360 232 SVQVTFVSDEPL------PQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAES---LQKGTYIDPC 302 (536)
Q Consensus 232 StQItf~~~~~~------~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~~~~~~~~~~~---~~~~~~~~PC 302 (536)
||||.|.+.... .......+.+++.+|.+|.||-++||.+++++........+..++..+- +....+.|||
T Consensus 278 stqll~~~r~~~~~~~~~DG~h~~~ldf~~e~~k~~g~Se~~Y~andv~~~~~~~~~~nflKsv~el~g~s~t~~l~~~~ 357 (549)
T COG5371 278 STQLLLKPRPCSDIPCLFDGGHKPLLDFANEEYKFYGDSELWYTANDVFKKGGSVAFRNFLKSVDELCGDSWTQILSHKE 357 (549)
T ss_pred ceeeeecCCCCccccccccCccccccccCCccceEEeehhhhhhHHHHHhhccceechhHHHHHHHHhcccchhhhcCcc
Confidence 999999876432 2344556678888999999999999999999887665554333322111 1122267999
Q ss_pred CCCCccceeccCCCcccccccceecccCCChH---hHHHHHHHHhhcCCCCCCCCcccCCCcccCccc-----c-ccccc
Q 009360 303 SPKGYLHHVESSPGSLAAKIDLSTLQAGGNFS---ECRSAALTLLQNGKEKCSYKSCYLGSTFMPKLR-----G-KFLAT 373 (536)
Q Consensus 303 ~p~Gy~~~~~~~~~~~~~~~~~~~~~GtGn~~---~C~~~v~~ll~~~~~~C~~~~Csf~gv~qP~l~-----g-~F~A~ 373 (536)
+++.-..+.+ ..|......-++-..|--++. +|+.+....+.+ ...|...+|+|+||.||++. . .-|.+
T Consensus 358 l~~~i~~~~k-~s~~eak~~l~il~~G~d~p~~s~qcr~l~~~~L~k-d~~c~spf~S~~gVeq~k~s~Tl~~~l~~y~i 435 (549)
T COG5371 358 LGPSIRENLK-DSCFEAKWVLNILHEGFDNPLESHQCRNLADLILSK-DPACHSPFCSFEGVEQTKLSWTLGTSLDIYNI 435 (549)
T ss_pred cCcccchhhh-hhhhhhhhheeeeeeccCCcccchhhhhhhhhhhcc-ccccCCCccccccccccceeeeccccCcceeE
Confidence 9988776633 122211110012235666554 999999999986 47899999999999999974 2 45788
Q ss_pred cceeeeecccCCcc-cccHHHHHHHHhcccccc--hHHHHhhCCCCCh-hhHHhhhhhhHHHHHHhhhccCCCCCCccee
Q 009360 374 ENFFHTSKFFGLHQ-RAFLSHLLMAGEQFCGED--WSKLKKKHQSLDD-EDLLRYCFSSAYIVALLHDSLGISLDDERIG 449 (536)
Q Consensus 374 S~fy~t~~fl~l~~-~~~l~~~~~aa~~~C~~~--w~~l~~~~~~~~~-~~l~~~Cf~~~Yi~~LL~dGygf~~d~~~I~ 449 (536)
+.||...+-++... .++..+|...|.-+|.-. |..+=.-++..++ +.....|.+..|..+||+.||.++. +....
T Consensus 436 sy~~~rgk~L~~p~~sft~k~~~~la~i~C~~~~~~~~~Fsl~~~~ke~k~~~~~~L~~~~~~slls~gYei~~-~~~~~ 514 (549)
T COG5371 436 SYAYDRGKLLGSPSNSFTNKGFLMLAIIVCIFYLIWRRRFSLYNILKELKRRRLKCLDRSDPFSLLSEGYEIPS-SRMLD 514 (549)
T ss_pred EEecCCCcccCCcccccchhHHHHHHHHHHhhHHHHHHHhccchHHHHHHhhhHHHhhhccchhhhhccccCch-hhhhh
Confidence 88888888888877 789999999999999853 6544222233332 2345679999999999999999985 46788
Q ss_pred ecccccccccccchhHHH
Q 009360 450 FANQVENIPLDWALGAFI 467 (536)
Q Consensus 450 f~~ki~~~ev~WtLGa~l 467 (536)
..|++.+.|.+|.|||-+
T Consensus 515 ~~ks~~nke~g~~l~as~ 532 (549)
T COG5371 515 LGKSSANKEHGPCLGASL 532 (549)
T ss_pred hcccccccccccccccch
Confidence 999999999999999754
No 6
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=99.69 E-value=2.1e-16 Score=162.78 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=110.9
Q ss_pred EEEEcCCcceEEEEEEEeCCC-CccccccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeec
Q 009360 82 VLLDGGSTGTRIHVFSYDTET-NHFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATA 159 (536)
Q Consensus 82 iVIDaGSsgtRl~Vy~~~~~~-~~~~~~~~~~kv~pGLss~~~-~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATA 159 (536)
.|||+|||+.|+.||++..+. ..++......++..|+..-.. +++.+.+.+..|.++++.. +.++.+.++++||+
T Consensus 3 AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~---~~~~v~~i~~vaTs 79 (300)
T TIGR03706 3 AAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL---RGFPVDEVRAVATA 79 (300)
T ss_pred EEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEEEEcH
Confidence 599999999999999986322 122211223455666644222 4555666666665555554 56778899999999
Q ss_pred hhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 160 GLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 160 GmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
+||. +.|++++++.|+... |+. ++||||+|||.|.|+++...+.. ....++|+||||||+++..
T Consensus 80 a~R~--A~N~~~~~~~i~~~t---gi~-----i~visg~eEa~l~~~gv~~~~~~------~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 80 ALRD--AKNGPEFLREAEAIL---GLP-----IEVISGEEEARLIYLGVAHTLPI------ADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHc--CCCHHHHHHHHHHHH---CCC-----eEEeChHHHHHHHHHHHHhCCCC------CCcEEEEecCCeEEEEEec
Confidence 9998 479999999999754 775 99999999999999999876532 2248999999999999986
Q ss_pred CCCCCccceeeEEecCe
Q 009360 240 DEPLPQEFSRTLKFGNV 256 (536)
Q Consensus 240 ~~~~~~~~~~~~~l~g~ 256 (536)
++. ......+.+|..
T Consensus 144 ~~~--~~~~~Sl~lG~v 158 (300)
T TIGR03706 144 DFE--PGEGVSLPLGCV 158 (300)
T ss_pred CCC--EeEEEEEccceE
Confidence 542 234455666654
No 7
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.7e-15 Score=164.78 Aligned_cols=158 Identities=22% Similarity=0.268 Sum_probs=117.2
Q ss_pred EEEEEcCCcceEEEEEEEeCCCC-ccccccceeecCCCCcccCCCcch-HHHHHHHHHHHHHHhCCCCCCCCceEEEEee
Q 009360 81 GVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYAVNPTN-AGDSLKDLLDFAKRKVPPAFWADTEIRLMAT 158 (536)
Q Consensus 81 ~iVIDaGSsgtRl~Vy~~~~~~~-~~~~~~~~~kv~pGLss~~~~p~~-a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~AT 158 (536)
..+||+|||+.|+.||+...+.. .+.-.....++..|+.+-..-+++ +.+.+..|-.+++.. ..++...|+++||
T Consensus 5 ~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~---~~~~~~~v~~vAT 81 (492)
T COG0248 5 VAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELL---DGFGAEEVRVVAT 81 (492)
T ss_pred EEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHH---hhCCCCEEEEehh
Confidence 35999999999999999875332 222122344667888876554444 455555555555544 5667778999999
Q ss_pred chhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEee
Q 009360 159 AGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFV 238 (536)
Q Consensus 159 AGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~ 238 (536)
+++|.. .|++++++.+++.+ |+. ++||||+|||.|+++||-..++. ....-++||||||||+++.
T Consensus 82 sA~R~A--~N~~eFl~rv~~~~---G~~-----ievIsGeeEArl~~lGv~~~~~~-----~~~~lv~DIGGGStEl~~g 146 (492)
T COG0248 82 SALRDA--PNGDEFLARVEKEL---GLP-----IEVISGEEEARLIYLGVASTLPR-----KGDGLVIDIGGGSTELVLG 146 (492)
T ss_pred HHHHcC--CCHHHHHHHHHHHh---CCc-----eEEeccHHHHHHHHHHHHhcCCC-----CCCEEEEEecCCeEEEEEe
Confidence 999995 59999999999976 786 99999999999999999887663 3456799999999999998
Q ss_pred cCCCCCccceeeEEecCeeE
Q 009360 239 SDEPLPQEFSRTLKFGNVTY 258 (536)
Q Consensus 239 ~~~~~~~~~~~~~~l~g~~y 258 (536)
.+.. .....++.+|..++
T Consensus 147 ~~~~--~~~~~Sl~~G~v~l 164 (492)
T COG0248 147 DNFE--IGLLISLPLGCVRL 164 (492)
T ss_pred cCCc--cceeEEeecceEEe
Confidence 6543 34555667776543
No 8
>PRK10854 exopolyphosphatase; Provisional
Probab=99.63 E-value=3.8e-15 Score=164.03 Aligned_cols=161 Identities=16% Similarity=0.239 Sum_probs=114.1
Q ss_pred CceEEEEEEcCCcceEEEEEEEeCCCC-ccccccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCCCCceEE
Q 009360 77 SVKYGVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIR 154 (536)
Q Consensus 77 ~~~y~iVIDaGSsgtRl~Vy~~~~~~~-~~~~~~~~~kv~pGLss~~~-~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~ 154 (536)
+..| .|||.|||+.||.||+...+.. .++......+++.|+..-.. +++.+.+.+..|-+|.+.. +.++.+.+.
T Consensus 10 ~~~~-A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~---~~~~v~~v~ 85 (513)
T PRK10854 10 PQEF-AAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERL---QGFSPANVC 85 (513)
T ss_pred CCEE-EEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEE
Confidence 3345 5999999999999999864321 12111223455666654322 3555556666555555544 456778999
Q ss_pred EEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeE
Q 009360 155 LMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQ 234 (536)
Q Consensus 155 l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQ 234 (536)
++||++||. ++|++++++.+++.. |+. ++||||+|||.|.++||-..+.. .+..-++||||||||
T Consensus 86 ~vATsAlRe--A~N~~~fl~~i~~~t---Gl~-----i~vIsG~EEA~l~~~gv~~~l~~-----~~~~lvvDIGGGStE 150 (513)
T PRK10854 86 IVGTHTLRQ--ALNATDFLKRAEKVI---PYP-----IEIISGNEEARLIFMGVEHTQPE-----KGRKLVIDIGGGSTE 150 (513)
T ss_pred EEehHHHHc--CcCHHHHHHHHHHHH---CCC-----eEEeCHHHHHHHHHhhhhcccCC-----CCCeEEEEeCCCeEE
Confidence 999999999 479999999999854 886 99999999999999998765531 135679999999999
Q ss_pred EEeecCCCCCccceeeEEecCeeE
Q 009360 235 VTFVSDEPLPQEFSRTLKFGNVTY 258 (536)
Q Consensus 235 Itf~~~~~~~~~~~~~~~l~g~~y 258 (536)
++...+.. .....++.+|....
T Consensus 151 l~~~~~~~--~~~~~S~~lG~vrl 172 (513)
T PRK10854 151 LVIGENFE--PILVESRRMGCVSF 172 (513)
T ss_pred EEEecCCC--eeEeEEEecceeeH
Confidence 99986542 34455566665543
No 9
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=99.62 E-value=3.7e-15 Score=163.51 Aligned_cols=158 Identities=23% Similarity=0.266 Sum_probs=113.9
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCCC-ccccccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLM 156 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~~-~~~~~~~~~kv~pGLss~~~-~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ 156 (536)
.+..|||.|||+.||.||+...+.. .++......+++.|+..... +++.+.+.+..|-+|++.. +.++.+.+.++
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~---~~~~v~~i~~v 82 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERL---QDIPPSQIRVV 82 (496)
T ss_pred CEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEEE
Confidence 3446999999999999999754321 12212233455666654322 3555566666665665554 55677899999
Q ss_pred eechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEE
Q 009360 157 ATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVT 236 (536)
Q Consensus 157 ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQIt 236 (536)
||+++|.. .|++++++.+++. +|+. ++||||+|||.|.++||-..+.. .+..-++||||||||++
T Consensus 83 ATsAvReA--~N~~~fl~~i~~~---tGl~-----ievIsG~eEA~l~~~gv~~~l~~-----~~~~lviDIGGGStEl~ 147 (496)
T PRK11031 83 ATATLRLA--VNADEFLAKAQEI---LGCP-----VQVISGEEEARLIYQGVAHTTGG-----ADQRLVVDIGGASTELV 147 (496)
T ss_pred EeHHHHcC--cCHHHHHHHHHHH---HCCC-----eEEeCHHHHHHHHHHhhhhccCC-----CCCEEEEEecCCeeeEE
Confidence 99999994 7999999999985 4886 99999999999999998765431 23467999999999999
Q ss_pred eecCCCCCccceeeEEecCe
Q 009360 237 FVSDEPLPQEFSRTLKFGNV 256 (536)
Q Consensus 237 f~~~~~~~~~~~~~~~l~g~ 256 (536)
+..+.. ..+..++.+|..
T Consensus 148 ~~~~~~--~~~~~Sl~lG~v 165 (496)
T PRK11031 148 TGTGAQ--ATSLFSLSMGCV 165 (496)
T ss_pred EecCCc--eeeeeEEeccch
Confidence 986542 345566777754
No 10
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=99.24 E-value=1.6e-11 Score=125.43 Aligned_cols=99 Identities=21% Similarity=0.369 Sum_probs=75.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchh
Q 009360 124 NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (536)
Q Consensus 124 ~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y 203 (536)
.++.+.+.+..|-++.+.. +.++.+.++++||++||.. .|++++++++++.. |+. ++||||+|||.|
T Consensus 33 ~~e~i~r~~~~L~~f~~~~---~~~~v~~i~~vATsA~R~A--~N~~~~~~~i~~~t---Gi~-----i~iIsgeeEa~l 99 (285)
T PF02541_consen 33 SEEAIERAIDALKRFKEIL---KDYGVEKIRAVATSALREA--KNSDEFLDRIKKET---GID-----IEIISGEEEARL 99 (285)
T ss_dssp -HHHHHHHHHHHHHHHHHH---HHTTGSEEEEEEEHHHHHS--TTHHHHHHHHHHHH---SS------EEEE-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH---HHCCCCEEEEEhhHHHHhC--cCHHHHHHHHHHHh---CCc-----eEEecHHHHHHH
Confidence 3444454555544444433 5677789999999999995 69999999999854 786 999999999999
Q ss_pred HHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeecC
Q 009360 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (536)
Q Consensus 204 ~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~~ 240 (536)
++.|+-..+. +.+...++|+||||||+++..+
T Consensus 100 ~~~gv~~~l~-----~~~~~lviDIGGGStEl~~~~~ 131 (285)
T PF02541_consen 100 SFLGVLSSLP-----PDKNGLVIDIGGGSTELILFEN 131 (285)
T ss_dssp HHHHHHHHST-----TTSSEEEEEEESSEEEEEEEET
T ss_pred HHHHHHhhcc-----ccCCEEEEEECCCceEEEEEEC
Confidence 9999966541 2356789999999999998854
No 11
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.34 E-value=0.00074 Score=68.81 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=75.0
Q ss_pred CCCCceEEEEEEcCCcceEEEEEEEeCCCCcccc-ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCce
Q 009360 74 PPSSVKYGVLLDGGSTGTRIHVFSYDTETNHFDF-DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTE 152 (536)
Q Consensus 74 ~~~~~~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~-~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tp 152 (536)
.-.+..+.++||.|||..|+.|.+...+ .+.. ...+.-+..|. ..|-+.+.+.|+.+++.|++..... ...
T Consensus 19 ~~~~~~~~~~iDiGSssi~~vv~~~~~~--~~~~~~~~~~~vr~G~---i~di~~a~~~i~~~~~~ae~~~g~~---i~~ 90 (267)
T PRK15080 19 VATESPLKVGVDLGTANIVLAVLDEDGQ--PVAGALEWADVVRDGI---VVDFIGAVTIVRRLKATLEEKLGRE---LTH 90 (267)
T ss_pred CCCCCCEEEEEEccCceEEEEEEcCCCC--EEEEEeccccccCCCE---EeeHHHHHHHHHHHHHHHHHHhCCC---cCe
Confidence 3345678899999999999999865321 2211 11111233332 3367888899999999888764221 122
Q ss_pred EEEEeechhcccC-hhhHHHHHHHHHHhhcccCccccCCceE-EcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCC
Q 009360 153 IRLMATAGLRLVD-VVVQDKILDSCRRVLRVSGFRFADDWAT-VITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGG 230 (536)
Q Consensus 153 v~l~ATAGmRlL~-~~~~~~il~~v~~~l~~~~F~f~~~~~~-VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGG 230 (536)
+ +| +++--. ..++..+. +..+..|+. +. ++++.. ++...++. +...++||||
T Consensus 91 v---~~-~vp~~~~~~~~~~~~----~~~~~aGl~-----~~~ii~e~~-------A~a~~~~~------~~~~vvDIGg 144 (267)
T PRK15080 91 A---AT-AIPPGTSEGDPRAII----NVVESAGLE-----VTHVLDEPT-------AAAAVLGI------DNGAVVDIGG 144 (267)
T ss_pred E---EE-EeCCCCCchhHHHHH----HHHHHcCCc-----eEEEechHH-------HHHHHhCC------CCcEEEEeCC
Confidence 3 33 222211 12444444 333345775 44 665332 22222221 1257999999
Q ss_pred ceeEEEeec
Q 009360 231 ASVQVTFVS 239 (536)
Q Consensus 231 aStQItf~~ 239 (536)
++|+++...
T Consensus 145 gtt~i~v~~ 153 (267)
T PRK15080 145 GTTGISILK 153 (267)
T ss_pred CcEEEEEEE
Confidence 999998764
No 12
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.45 E-value=0.48 Score=51.45 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=41.3
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCCCcccc-ccceeecCCCCcc-cCCCcchHHHHHHHHHHHHHHh
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDF-DLGSMRLNPGLSS-YAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~-~~~~~kv~pGLss-~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
+..+.||+||+..++.|-+...+. .+.+ .....+ ..|+.. ...|.+.+.++|+.+++.|++.
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~-~~~i~g~~~~~-s~gi~~G~I~d~~~~~~aI~~av~~ae~~ 71 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDG-MVNIIGVGSCP-SRGMDKGGVNDLESVVKCVQRAIDQAELM 71 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCC-CEEEEEEEEcc-CCCccCCEEEcHHHHHHHHHHHHHHHHHH
Confidence 567899999999999998875422 1221 011111 234332 2347889999999999999875
No 13
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=92.09 E-value=11 Score=39.44 Aligned_cols=122 Identities=17% Similarity=0.266 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchh
Q 009360 124 NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (536)
Q Consensus 124 ~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y 203 (536)
+.+.+...|+.+++.|.+.+... ....++. .+.+.. .+..+++++.+.++.. ++. .+.++...
T Consensus 73 d~d~~~~~l~~~~~~~~~~l~~~-~~~~~vv-itvP~~--~~~~~R~~l~~a~~~a----g~~----~~~li~ep----- 135 (335)
T PRK13929 73 DYDMTTDLLKQIMKKAGKNIGMT-FRKPNVV-VCTPSG--STAVERRAISDAVKNC----GAK----NVHLIEEP----- 135 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCC-CCCCeEE-EEcCCC--CCHHHHHHHHHHHHHc----CCC----eeEeecCH-----
Confidence 45556667777777665443211 1112344 333332 4557778877766542 442 25565443
Q ss_pred HHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeecCCCCCccceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhc
Q 009360 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLS 282 (536)
Q Consensus 204 ~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~ 282 (536)
+++-+..|. ..+...++.++|+|||+|+++....+. . +++++ ..+|-+..-+.+.+.+.
T Consensus 136 --~Aaa~~~g~-~~~~~~~~lvvDiG~gtt~v~vi~~~~-------------~---~~~~~-~~~GG~~id~~l~~~l~ 194 (335)
T PRK13929 136 --VAAAIGADL-PVDEPVANVVVDIGGGTTEVAIISFGG-------------V---VSCHS-IRIGGDQLDEDIVSFVR 194 (335)
T ss_pred --HHHHHhcCC-CcCCCceEEEEEeCCCeEEEEEEEeCC-------------E---EEecC-cCCHHHHHHHHHHHHHH
Confidence 222232231 112234567999999999999864321 0 22332 34777766665555443
No 14
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=91.56 E-value=0.69 Score=46.36 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=71.3
Q ss_pred EEcCCcceEEEEEEEeCCCCccccccceeec-CCCCcc-cCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeechh
Q 009360 84 LDGGSTGTRIHVFSYDTETNHFDFDLGSMRL-NPGLSS-YAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGL 161 (536)
Q Consensus 84 IDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv-~pGLss-~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGm 161 (536)
||.||+...+.+.+-+.+. + ..... +-++.. -..|.+.+...|+.+.+.|++.+.. ..+.+.+--.+.+
T Consensus 2 ~dig~~~ik~v~~~~~~~~--~----~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~---~~~~vvisVP~~~ 72 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQP--V----AGVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI---ELTHAATAIPPGT 72 (239)
T ss_pred CCcccceEEEEEEecCCCE--E----EEEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhCC---CcCcEEEEECCCC
Confidence 7999999999888765421 1 11111 112221 2337788889999999988776532 2334554444444
Q ss_pred cccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeecC
Q 009360 162 RLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (536)
Q Consensus 162 RlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~~ 240 (536)
. ..+++++.+.++. .|+. .+.++ .|..=++++ | +. ....++||||++|.++....
T Consensus 73 ~---~~~r~a~~~a~~~----aGl~----~~~li---~ep~Aaa~~--~--~~------~~~~vvDiGggtt~i~i~~~ 127 (239)
T TIGR02529 73 I---EGDPKVIVNVIES----AGIE----VLHVL---DEPTAAAAV--L--QI------KNGAVVDVGGGTTGISILKK 127 (239)
T ss_pred C---cccHHHHHHHHHH----cCCc----eEEEe---ehHHHHHHH--h--cC------CCcEEEEeCCCcEEEEEEEC
Confidence 3 3556666655554 3663 13333 243333332 1 21 13589999999999987643
No 15
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=91.04 E-value=1.8 Score=45.71 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHH-hCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHH
Q 009360 130 DSLKDLLDFAKR-KVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVA 208 (536)
Q Consensus 130 ~~l~~ll~~a~~-~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~v 208 (536)
+.++.+++.+-. ..... ....|+.+. ...+ .+...++++.+.+-+.+ ++ +. +-++ ++.+.+
T Consensus 75 ~~~e~i~~~~~~~~l~~~-~~~~~vll~-~p~~--~~~~~r~~~~e~lfE~~---~~--~~--v~~~---~~~~~a---- 136 (373)
T smart00268 75 DDMEKIWDYTFFNELRVE-PEEHPVLLT-EPPM--NPKSNREKILEIMFETF---NF--PA--LYIA---IQAVLS---- 136 (373)
T ss_pred HHHHHHHHHHHhhhcCCC-CccCeeEEe-cCCC--CCHHHHHHHHHHhhccC---CC--Ce--EEEe---ccHHHH----
Confidence 445556655543 22111 234577763 2222 23445566655554432 32 21 3333 233333
Q ss_pred HHhhccCCCCCCCceEEEeeCCceeEEEeecC
Q 009360 209 NYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (536)
Q Consensus 209 Nyllg~l~~~~~~t~G~lDlGGaStQItf~~~ 240 (536)
-|..| ..+.-+||+|+++|+|+-..+
T Consensus 137 ~~~~g------~~~~lVVDiG~~~t~v~pv~~ 162 (373)
T smart00268 137 LYASG------RTTGLVIDSGDGVTHVVPVVD 162 (373)
T ss_pred HHhCC------CCEEEEEecCCCcceEEEEEC
Confidence 23333 245568999999999987654
No 16
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=91.04 E-value=3.1 Score=44.15 Aligned_cols=61 Identities=16% Similarity=0.038 Sum_probs=41.4
Q ss_pred EEEEcCCcceEEEEEEEeCCC-Cccccccceeec-CCCCcc-cCCCcchHHHHHHHHHHHHHHhCCC
Q 009360 82 VLLDGGSTGTRIHVFSYDTET-NHFDFDLGSMRL-NPGLSS-YAVNPTNAGDSLKDLLDFAKRKVPP 145 (536)
Q Consensus 82 iVIDaGSsgtRl~Vy~~~~~~-~~~~~~~~~~kv-~pGLss-~~~~p~~a~~~l~~ll~~a~~~IP~ 145 (536)
+.||.||+.+++.+-+...+. ..+. ....+ ..|+.. -..|++.+.+.|+.+++.|++..+.
T Consensus 3 ~~lDIGs~~ik~vv~~~~~~~~~~i~---~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~ 66 (371)
T TIGR01174 3 VGLDIGTSKICAIVAEVLEDGELNII---GVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGC 66 (371)
T ss_pred EEEEeccceEEEEEEEEcCCCCEEEE---EEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCC
Confidence 689999999999999876533 2221 11111 235443 2337888999999999999887543
No 17
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=90.77 E-value=0.81 Score=49.76 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=49.1
Q ss_pred EEEEEEcCCcceEEEEEEEeCCCCcccc----ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEE
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTETNHFDF----DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRL 155 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~~~~~~----~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l 155 (536)
+.+.+|.||+.+...|-+...+. .+.+ +..+.-++.|. ..|.+.+.++++..++.|++..-.+ -..|++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g-~i~iig~g~~~SrGik~G~---I~di~~~~~sI~~av~~AE~mag~~---i~~v~v 79 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDG-RLNIIGVGSHPSRGIKKGV---IVDLDAAAQSIKKAVEAAERMAGCE---IKSVIV 79 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCC-eEEEEeeecccCcccccce---EEcHHHHHHHHHHHHHHHHHhcCCC---cceEEE
Confidence 77899999999999999987643 1221 12222233442 4588899999999999999875332 224554
Q ss_pred Eeec
Q 009360 156 MATA 159 (536)
Q Consensus 156 ~ATA 159 (536)
..++
T Consensus 80 s~sG 83 (418)
T COG0849 80 SLSG 83 (418)
T ss_pred Eecc
Confidence 4444
No 18
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=90.73 E-value=0.9 Score=50.46 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=58.0
Q ss_pred ceEEEEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEe
Q 009360 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMA 157 (536)
Q Consensus 78 ~~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~A 157 (536)
....+.||.|+|++|.-||....+.+.--.+...+...|-=..+..+|.++.+.+..|++.+.+..+...+...-+-...
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 46778999999999999999655442111122223333333345669999999999999999988776655554455555
Q ss_pred echhcc
Q 009360 158 TAGLRL 163 (536)
Q Consensus 158 TAGmRl 163 (536)
.++.|.
T Consensus 85 v~~qr~ 90 (516)
T KOG2517|consen 85 VVNQRE 90 (516)
T ss_pred EEecCC
Confidence 555555
No 19
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=90.61 E-value=3.5 Score=43.57 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.9
Q ss_pred CceEEEeeCCceeEEEeecCC
Q 009360 221 ETTGIIELGGASVQVTFVSDE 241 (536)
Q Consensus 221 ~t~G~lDlGGaStQItf~~~~ 241 (536)
.+.-+||+|+++|.|+-..+.
T Consensus 143 ~~~lVVDiG~~~t~i~pv~~G 163 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVYDG 163 (371)
T ss_pred CeEEEEECCCCeeEEEEEECC
Confidence 456689999999999877543
No 20
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=90.52 E-value=11 Score=43.13 Aligned_cols=40 Identities=13% Similarity=0.397 Sum_probs=26.3
Q ss_pred eEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 192 ~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
+++|+...=+.++| .+.. ....++.++|+|||++.|+...
T Consensus 180 ~~li~EPtAAAlay-----~~~~---~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 180 LRLLNEPTAAAIAY-----GLDS---GQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred EEEecchHHHHHHh-----hccc---CCCCEEEEEECCCCeEEEEEEE
Confidence 47777665554443 3321 2245788999999999997653
No 21
>CHL00094 dnaK heat shock protein 70
Probab=89.51 E-value=13 Score=42.48 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=16.8
Q ss_pred CCceEEEeeCCceeEEEeec
Q 009360 220 SETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 220 ~~t~G~lDlGGaStQItf~~ 239 (536)
..++.++|+|||++.++...
T Consensus 186 ~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 186 NETILVFDLGGGTFDVSILE 205 (621)
T ss_pred CCEEEEEEcCCCeEEEEEEE
Confidence 35788999999999998763
No 22
>PRK13410 molecular chaperone DnaK; Provisional
Probab=88.56 E-value=16 Score=42.31 Aligned_cols=40 Identities=20% Similarity=0.477 Sum_probs=26.1
Q ss_pred eEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 192 ~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
+++|+...=+.+ .|.+.. ....++.++|||||++.|+...
T Consensus 166 ~~li~EPtAAAl-----ayg~~~---~~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 166 ERILNEPTAAAL-----AYGLDR---SSSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred EEEecchHHHHH-----Hhcccc---CCCCEEEEEECCCCeEEEEEEE
Confidence 567665554443 344321 2346789999999999998754
No 23
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=88.51 E-value=4.1 Score=42.83 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCC-CCCceEEEeeCCceeEEEeecCCCCCccce
Q 009360 170 DKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGD-PSETTGIIELGGASVQVTFVSDEPLPQEFS 248 (536)
Q Consensus 170 ~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~-~~~t~G~lDlGGaStQItf~~~~~~~~~~~ 248 (536)
+++++...+++++.|+. ..+|+=+-=+.+-.+..++. .+... ..+++.++|+|..+|++.+..+..
T Consensus 135 k~~v~~~~~~~~~aGL~-----~~~vDv~~~Al~r~~~~~~~--~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~------ 201 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLK-----PVAVDVEAFALARLFEFLEP--QLPDEEDAETVALVDIGASSTTVIIFQNGK------ 201 (340)
T ss_dssp HHHHHHHHHHHHHTT-E-----EEEEEEHHHHGGGGGHHHHH--TST----T-EEEEEEE-SS-EEEEEEETTE------
T ss_pred HHHHHHHHHHHHHcCCc-----eEEEeehHHHHHHHHHHHHH--hCCcccccceEEEEEecCCeEEEEEEECCE------
Confidence 44455555555555664 55665433344433333221 12111 235789999999999999875432
Q ss_pred eeEEecCeeEEEEEeecccccHHHHHHHHHHH
Q 009360 249 RTLKFGNVTYNLYSHSFLHFGQNVAFETLREL 280 (536)
Q Consensus 249 ~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~ 280 (536)
-+|+++. -+|.++..+.+...
T Consensus 202 ----------~~f~R~i-~~G~~~l~~~i~~~ 222 (340)
T PF11104_consen 202 ----------PIFSRSI-PIGGNDLTEAIARE 222 (340)
T ss_dssp ----------EEEEEEE-S-SHHHHHHHHHHH
T ss_pred ----------EEEEEEE-eeCHHHHHHHHHHh
Confidence 2455554 57776665555433
No 24
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=88.19 E-value=1.4 Score=43.84 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=38.3
Q ss_pred EEEEEEcCCcceEEEEEEEeCCCCccccccceee-cCCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR-LNPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k-v~pGLss~~~~p~~a~~~l~~ll~~a~~~I 143 (536)
|.+.||+|+|++|+.+|. ..++ .+........ ..+.-.....||++..+.+..+++.+.+..
T Consensus 1 y~lgiDiGTts~K~~l~d-~~g~-iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD-EDGK-IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEEECSSEEEEEEEE-TTSC-EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEcccceEEEEEe-CCCC-EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 678999999999999998 4433 2221111111 111112234488888888888888877765
No 25
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=86.89 E-value=20 Score=40.64 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=17.0
Q ss_pred CCceEEEeeCCceeEEEeec
Q 009360 220 SETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 220 ~~t~G~lDlGGaStQItf~~ 239 (536)
.+++.++|+|||++.++...
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred CcEEEEEECCCCeEEEEEEE
Confidence 46789999999999998754
No 26
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=86.78 E-value=22 Score=40.65 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=25.5
Q ss_pred eEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 192 ~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
+++|+...=+.++ |.+.. ....++.++|+|||++.|+...
T Consensus 160 ~~li~EPtAAAla-----y~~~~---~~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 160 LRLLNEPTAAAVA-----YGLDK---ASEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred eEEecCHHHHHHH-----Hhhcc---CCCCEEEEEEcCCCeEEEEEEE
Confidence 4666655444443 33322 2345789999999999998754
No 27
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=86.59 E-value=8.8 Score=40.74 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHH
Q 009360 130 DSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVAN 209 (536)
Q Consensus 130 ~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vN 209 (536)
+.++.+++.+-...-.......||.+.-..- .+...++.+.+.+-+.+ ++ +. +-++. ++ +.+-
T Consensus 74 ~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~---~~~~~r~~l~e~lfE~~---~~--~~--v~~~~---~~----~~a~ 136 (393)
T PF00022_consen 74 DALEEIWDYIFSNLLKVDPSDHPVLLTEPPF---NPRSQREKLAEILFEKF---GV--PS--VYFIP---SP----LLAL 136 (393)
T ss_dssp HHHHHHHHHHHHTTT-SSGGGSEEEEEESTT-----HHHHHHHHHHHHHTS-------SE--EEEEE---HH----HHHH
T ss_pred cccccccccccccccccccccceeeeecccc---CCchhhhhhhhhhhccc---cc--ce--eeeee---cc----cccc
Confidence 4567777766544212224556877765443 33455566665554432 33 22 44443 22 3344
Q ss_pred HhhccCCCCCCCceEEEeeCCceeEEEeecCCCCCccceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhcc
Q 009360 210 YALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSS 283 (536)
Q Consensus 210 yllg~l~~~~~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~~ 283 (536)
|..|. .|.-+||+|.++|+|+-..+...-..... .+.+|.+..-+.+.+.|.+
T Consensus 137 ~~~g~------~tglVVD~G~~~t~v~pV~dG~~~~~~~~---------------~~~~GG~~lt~~l~~lL~~ 189 (393)
T PF00022_consen 137 YASGR------TTGLVVDIGYSSTSVVPVVDGYVLPHSIK---------------RSPIGGDDLTEYLKELLKE 189 (393)
T ss_dssp HHTTB------SSEEEEEESSS-EEEEEEETTEE-GGGBE---------------EES-SHHHHHHHHHHHHHH
T ss_pred ccccc------ccccccccceeeeeeeeeeeccccccccc---------------cccccHHHHHHHHHHHHHh
Confidence 55552 45668999999999987754321111111 2457777776666555554
No 28
>PRK13411 molecular chaperone DnaK; Provisional
Probab=86.50 E-value=26 Score=40.42 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=16.2
Q ss_pred CCceEEEeeCCceeEEEee
Q 009360 220 SETTGIIELGGASVQVTFV 238 (536)
Q Consensus 220 ~~t~G~lDlGGaStQItf~ 238 (536)
..++.++|+|||++.|+..
T Consensus 185 ~~~vlV~DlGgGT~dvsi~ 203 (653)
T PRK13411 185 EQLILVFDLGGGTFDVSIL 203 (653)
T ss_pred CCEEEEEEcCCCeEEEEEE
Confidence 4578999999999999865
No 29
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=85.62 E-value=19 Score=41.71 Aligned_cols=40 Identities=15% Similarity=0.466 Sum_probs=26.0
Q ss_pred eEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 192 ~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
+++|+...=+.++ |.+.. +..+++.++|+|||++.++...
T Consensus 205 ~~li~EptAAAla-----y~~~~---~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 205 LRIINEPTAAALA-----FGMDK---NDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred EEEeCchHHHHHH-----hcccc---CCCcEEEEEeCCCCeEEEEEEE
Confidence 5666665544443 33321 2345789999999999998653
No 30
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=83.96 E-value=20 Score=37.26 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=15.3
Q ss_pred ceEEEeeCCceeEEEeec
Q 009360 222 TTGIIELGGASVQVTFVS 239 (536)
Q Consensus 222 t~G~lDlGGaStQItf~~ 239 (536)
.+.++|+|||.|+++...
T Consensus 149 ~~lvvDiGggttdvs~v~ 166 (334)
T PRK13927 149 GSMVVDIGGGTTEVAVIS 166 (334)
T ss_pred eEEEEEeCCCeEEEEEEe
Confidence 467899999999999763
No 31
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=83.71 E-value=56 Score=34.52 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchh
Q 009360 124 NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (536)
Q Consensus 124 ~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y 203 (536)
|.+.+...|+.+++.+... .......+.+..-+++ .+.++.++.+.+++. +.. .+.+|+ |.
T Consensus 70 D~~~~~~~l~~~l~k~~~~---~~~~~p~vvi~vP~~~---T~verrA~~~a~~~a----Ga~----~V~li~---ep-- 130 (326)
T PF06723_consen 70 DYEAAEEMLRYFLKKALGR---RSFFRPRVVICVPSGI---TEVERRALIDAARQA----GAR----KVYLIE---EP-- 130 (326)
T ss_dssp SHHHHHHHHHHHHHHHHTS---S-SS--EEEEEE-SS-----HHHHHHHHHHHHHT----T-S----EEEEEE---HH--
T ss_pred CHHHHHHHHHHHHHHhccC---CCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHc----CCC----EEEEec---ch--
Confidence 4555667777777776652 2233334555555554 346778888888763 321 366664 33
Q ss_pred HHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 204 ~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
+++-+..|- .-......-++|+|||.|+|+-.+
T Consensus 131 --~AaAiGaGl-~i~~~~g~miVDIG~GtTdiavis 163 (326)
T PF06723_consen 131 --IAAAIGAGL-DIFEPRGSMIVDIGGGTTDIAVIS 163 (326)
T ss_dssp --HHHHHHTT---TTSSS-EEEEEE-SS-EEEEEEE
T ss_pred --HHHHhcCCC-CCCCCCceEEEEECCCeEEEEEEE
Confidence 333333331 111122345899999999999765
No 32
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=83.65 E-value=57 Score=37.33 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=25.8
Q ss_pred eEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 192 ~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
+++|+...=+.++ |.+.. +...++.++|+|||++.++...
T Consensus 172 ~~li~EPtAAAla-----y~~~~---~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 172 LRLIAEPTAAAYA-----YGLNK---NQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEecCcHHHHHH-----Hhccc---CCCCEEEEEECCCCcEEEEEEE
Confidence 5777766554443 33221 2235678999999999998753
No 33
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=83.36 E-value=33 Score=35.57 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=27.8
Q ss_pred ceEEEeeCCceeEEEeecCCCCCccceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhc
Q 009360 222 TTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLS 282 (536)
Q Consensus 222 t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~ 282 (536)
+..++|+||+.|+++....... ++++ -.-+|.+..-+.+.+.+.
T Consensus 153 ~~lVvDiG~gttdvs~v~~g~~----------------~~~~-~~~lGG~~id~~l~~~l~ 196 (335)
T PRK13930 153 GNMVVDIGGGTTEVAVISLGGI----------------VYSE-SIRVAGDEMDEAIVQYVR 196 (335)
T ss_pred ceEEEEeCCCeEEEEEEEeCCE----------------Eeec-CcCchhHHHHHHHHHHHH
Confidence 4579999999999987643211 1121 245677777666655544
No 34
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=83.32 E-value=7 Score=39.18 Aligned_cols=109 Identities=23% Similarity=0.229 Sum_probs=59.8
Q ss_pred EEEEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeec
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATA 159 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATA 159 (536)
|.+-||+|||+++..+|. + ++ .+ ......|+ ..++.+.+.+..+++ ..+.. ...-..+..|.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~-g~-il----~~~~~~~~-----~~~~~~~~~l~~~~~----~~~~~--~~~i~~i~~Tg 62 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-D-GK-VI----GYKWLDTT-----PVIEETARAILEALK----EAGIG--LEPIDKIVATG 62 (248)
T ss_pred CEEEEEcChhheEEEEEc-C-CE-EE----EEEEecCC-----CCHHHHHHHHHHHHH----HcCCC--hhheeEEEEEC
Confidence 346799999999999996 3 22 22 12222222 123333444444443 22221 12245566777
Q ss_pred hhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 160 GLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 160 GmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
-+|-+= . | .+ . -.+|-..-=.+++++.. ++-.++|+||..+.+....
T Consensus 63 ~~~~~v-------~-----------~--~~---~---~~~ei~~~~~g~~~~~~-------~~~~vidiGgqd~k~i~~~ 109 (248)
T TIGR00241 63 YGRHKV-------G-----------F--AD---K---IVTEISCHGKGANYLAP-------EARGVIDIGGQDSKVIKID 109 (248)
T ss_pred CCcccc-------c-----------c--cC---C---ceEEhhHHHHHHHHHCC-------CCCEEEEecCCeeEEEEEC
Confidence 665531 0 1 11 0 12355555677788754 2346999999999988764
No 35
>PTZ00281 actin; Provisional
Probab=81.93 E-value=20 Score=38.32 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=21.0
Q ss_pred CceEEEeeCCceeEEEeecCCCCCccceeeEEecC
Q 009360 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGN 255 (536)
Q Consensus 221 ~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g 255 (536)
.|.-+||+|-++|+|+=.-+...-......+.++|
T Consensus 149 ~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG 183 (376)
T PTZ00281 149 TTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 183 (376)
T ss_pred ceEEEEECCCceEEEEEEEecccchhheeeccCcH
Confidence 35568999999999986544332222333444444
No 36
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=81.72 E-value=21 Score=39.56 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCceEEEeeCCceeEEEeecCCCCCccceeeEEecCee
Q 009360 220 SETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVT 257 (536)
Q Consensus 220 ~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~ 257 (536)
...+.++|||||.|.++...+.. ..+...+.+||..
T Consensus 145 e~gVa~IDIGgGTT~iaVf~~G~--l~~T~~l~vGG~~ 180 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFDAGK--VIDTACLNVGGRL 180 (475)
T ss_pred cCceEEEEeCCCceEEEEEECCE--EEEEEEEecccce
Confidence 44678999999999999876543 2344455566553
No 37
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=81.57 E-value=21 Score=39.47 Aligned_cols=155 Identities=17% Similarity=0.275 Sum_probs=81.7
Q ss_pred EEEEEEcCCcceEEEEEEEeCCC-------Ccccc--ccceeec----CCCCcccCCCcchHHHHHHHHHH--HHHHhCC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTET-------NHFDF--DLGSMRL----NPGLSSYAVNPTNAGDSLKDLLD--FAKRKVP 144 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~-------~~~~~--~~~~~kv----~pGLss~~~~p~~a~~~l~~ll~--~a~~~IP 144 (536)
..|=||.|+|.|-|.+=+..-++ |.+.+ +....|- .|=++.-.-| .+.++.+++ +.+.-|.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID----~~al~~iv~~eY~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEID----AEALKEIVEEEYRKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccC----HHHHHHHHHHHHHHcCCC
Confidence 45789999999999887764321 22221 1111111 1222211112 245555554 3344454
Q ss_pred CCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCcccc---CCceEEcCCcccchhHHHHHHHhhccCCCCCCC
Q 009360 145 PAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFA---DDWATVITGSDEGVYAWIVANYALGTLGGDPSE 221 (536)
Q Consensus 145 ~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~---~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~ 221 (536)
+++-..=-|.+=+-+ +..+|++++++.+.+... .|..- ++-=.||.|.-=|...+- .+.+.
T Consensus 80 p~~I~TGAVIITGET----ArKeNA~~v~~~Ls~~aG--DFVVATAGPdLEsiiAgkGsGA~~~S----------~~~~~ 143 (473)
T PF06277_consen 80 PEDIDTGAVIITGET----ARKENAREVLHALSGFAG--DFVVATAGPDLESIIAGKGSGAAALS----------KEHHT 143 (473)
T ss_pred HHHCccccEEEecch----hhhhhHHHHHHHHHHhcC--CEEEEccCCCHHHHHhccCccHHHHh----------hhhCC
Confidence 443333234443333 234799999999888654 35321 111144555444443321 12456
Q ss_pred ceEEEeeCCceeEEEeecCCCCCccceeeEEecCe
Q 009360 222 TTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (536)
Q Consensus 222 t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~ 256 (536)
++.-||+|||-|-++....... .....+++||+
T Consensus 144 ~V~NiDIGGGTtN~avf~~G~v--~~T~cl~IGGR 176 (473)
T PF06277_consen 144 VVANIDIGGGTTNIAVFDNGEV--IDTACLDIGGR 176 (473)
T ss_pred eEEEEEeCCCceeEEEEECCEE--EEEEEEeeccE
Confidence 7888999999999987754321 23445566665
No 38
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=81.01 E-value=37 Score=35.44 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.3
Q ss_pred EEEEEEcCCcceEEEEEEEeC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDT 100 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~ 100 (536)
..+-||.||++.|+.+.+...
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~ 24 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSG 24 (348)
T ss_pred cEEEEEeccCeEEEEEEEecC
Confidence 568899999999998887543
No 39
>PTZ00466 actin-like protein; Provisional
Probab=80.45 E-value=19 Score=38.63 Aligned_cols=87 Identities=9% Similarity=0.173 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHH
Q 009360 130 DSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVAN 209 (536)
Q Consensus 130 ~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vN 209 (536)
+.++.+.+++-+.+... ....||.+- .+.+ .+..+++++.+.+-+.+ ++ +. +-+.. +++.+-
T Consensus 87 d~~e~iw~~~f~~l~v~-~~~~pvllt-e~~~--~~~~~re~~~e~lFE~~---~~--p~--~~~~~---~~~lsl---- 148 (380)
T PTZ00466 87 NDMENIWIHVYNSMKIN-SEEHPVLLT-EAPL--NPQKNKEKIAEVFFETF---NV--PA--LFISI---QAILSL---- 148 (380)
T ss_pred HHHHHHHHHHHhhcccC-CccCeEEEe-cCcc--ccHHHHHHHHHHHhccC---CC--Ce--EEEec---chHHHH----
Confidence 45666666664433221 124577653 3332 34566666666544432 22 21 33322 333332
Q ss_pred HhhccCCCCCCCceEEEeeCCceeEEEeecC
Q 009360 210 YALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (536)
Q Consensus 210 yllg~l~~~~~~t~G~lDlGGaStQItf~~~ 240 (536)
|..| ..|.-+||+|-++|+|+=.-+
T Consensus 149 ~a~g------~~tglVVD~G~~~t~v~PV~~ 173 (380)
T PTZ00466 149 YSCG------KTNGTVLDCGDGVCHCVSIYE 173 (380)
T ss_pred HhcC------CceEEEEeCCCCceEEEEEEC
Confidence 3333 234558999999999976654
No 40
>PTZ00004 actin-2; Provisional
Probab=78.86 E-value=26 Score=37.43 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=15.3
Q ss_pred ceEEEeeCCceeEEEeecC
Q 009360 222 TTGIIELGGASVQVTFVSD 240 (536)
Q Consensus 222 t~G~lDlGGaStQItf~~~ 240 (536)
|.-+||+|.+.|+|+=..+
T Consensus 150 tglVVDiG~~~t~v~pV~d 168 (378)
T PTZ00004 150 TGIVLDSGDGVSHTVPIYE 168 (378)
T ss_pred eEEEEECCCCcEEEEEEEC
Confidence 4458999999999986654
No 41
>PTZ00452 actin; Provisional
Probab=78.75 E-value=26 Score=37.43 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHH-HhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHH
Q 009360 129 GDSLKDLLDFAK-RKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIV 207 (536)
Q Consensus 129 ~~~l~~ll~~a~-~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~ 207 (536)
.+.++.+++++- +.+.. .-.+.||.+-- +-+ .+..+++++.+.+-+.+.-..+ -+.. .+..+-
T Consensus 79 wd~~e~iw~~~f~~~l~v-~p~~~pvlitE-~~~--~~~~~Re~l~eilFE~~~vp~~-------~~~~---~~~lsl-- 142 (375)
T PTZ00452 79 WDDIEIIWHHAFYNELCM-SPEDQPVFMTD-APM--NSKFNRERMTQIMFETFNTPCL-------YISN---EAVLSL-- 142 (375)
T ss_pred HHHHHHHHHHHHHhhcCC-CcccCceeeec-CCC--CCHHHHHHHHHHHhhccCCceE-------EEec---hHHHHH--
Confidence 356677777652 22211 11235776632 222 3456777766655544322122 2221 222222
Q ss_pred HHHhhccCCCCCCCceEEEeeCCceeEEEeecCCCCCccceeeEEecCe
Q 009360 208 ANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (536)
Q Consensus 208 vNyllg~l~~~~~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~ 256 (536)
|..| ..|.-+||+|-+.|+|+=.-+...-+....+++++|.
T Consensus 143 --ya~g------~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~ 183 (375)
T PTZ00452 143 --YTSG------KTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGR 183 (375)
T ss_pred --HHCC------CceeeeecCCCCcceEEEEECCEEeccceEEeeccch
Confidence 3333 2344589999999999876544322333344455543
No 42
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=76.86 E-value=75 Score=36.84 Aligned_cols=20 Identities=15% Similarity=0.522 Sum_probs=17.0
Q ss_pred CCceEEEeeCCceeEEEeec
Q 009360 220 SETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 220 ~~t~G~lDlGGaStQItf~~ 239 (536)
..++.++|||||++.|+...
T Consensus 211 ~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred CCEEEEEECCCCeEEEEEEE
Confidence 46789999999999998754
No 43
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=75.71 E-value=1.4 Score=36.21 Aligned_cols=18 Identities=39% Similarity=0.802 Sum_probs=15.8
Q ss_pred ccCCcceeeeecCceEEE
Q 009360 514 RKPQLKTIYDLEKGRYII 531 (536)
Q Consensus 514 r~~~~k~~~d~~~~~~~~ 531 (536)
+-+++|+.||.|.|.|+=
T Consensus 26 ~Qp~~k~lfDPETGqYVe 43 (75)
T PF15232_consen 26 VQPKTKTLFDPETGQYVE 43 (75)
T ss_pred CCcceeeeecCCCCcEEE
Confidence 457899999999999984
No 44
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.84 E-value=24 Score=37.34 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=16.8
Q ss_pred eEEEeeCCceeEEEeecCCC
Q 009360 223 TGIIELGGASVQVTFVSDEP 242 (536)
Q Consensus 223 ~G~lDlGGaStQItf~~~~~ 242 (536)
+.++|+|++||++.+.-+..
T Consensus 195 vav~~Igat~s~l~vi~~gk 214 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGK 214 (354)
T ss_pred heeeeecccceEEEEEECCe
Confidence 67899999999999986543
No 45
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=69.39 E-value=12 Score=39.09 Aligned_cols=161 Identities=21% Similarity=0.211 Sum_probs=87.5
Q ss_pred CceEEEEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcccCCCc-chHHHHHHHHHHHHHHhC---CCCCCCCce
Q 009360 77 SVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNP-TNAGDSLKDLLDFAKRKV---PPAFWADTE 152 (536)
Q Consensus 77 ~~~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss~~~~p-~~a~~~l~~ll~~a~~~I---P~~~~~~Tp 152 (536)
...|.+-||.|+|+||..|+.- .++ .+ -+-.-|=+++...+ +.|.+.+...+..|...- |.+ . ..-
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~-~g~-vl------g~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~-i-~~~ 72 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADE-DGN-VL------GRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDE-I-AAI 72 (301)
T ss_pred CccEEEEEccCCcceEEEEEcC-CCc-EE------EEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHH-h-Cce
Confidence 4678899999999999999972 222 11 23344557788888 888888888888776421 111 1 123
Q ss_pred EEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCce
Q 009360 153 IRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGAS 232 (536)
Q Consensus 153 v~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaS 232 (536)
+.-.|-||+-. +.-.+..... .||. + ++.|-+. +.++. .|.+.. +.--++=.|-||
T Consensus 73 ~agla~ag~~~------~~~~~~~~~~---l~~a--~-~v~v~~D------g~iAl---~ga~~~---~~Gii~i~GTGS 128 (301)
T COG2971 73 VAGLALAGANV------EEAREELERL---LPFA--G-KVDVEND------GLIAL---RGALGD---DDGIIVIAGTGS 128 (301)
T ss_pred eeeeeccCcch------hHHHHHHHHh---cCcc--c-eEEEecC------hHHHH---hhccCC---CCCEEEEecCCe
Confidence 55566666522 2222222222 2452 1 3555443 22332 222221 223467789999
Q ss_pred eEEEeecCCCCCccceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhc
Q 009360 233 VQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLS 282 (536)
Q Consensus 233 tQItf~~~~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~ 282 (536)
.=+.+.- .+..+.+|.-|.+= =.|=|..-+++.+.+.+.
T Consensus 129 i~~~~~g--------g~~~r~GG~Gf~Ig---DegSga~ig~~~L~~~lr 167 (301)
T COG2971 129 IGYGRKG--------GRRERVGGWGFPIG---DEGSGAWIGREALQEALR 167 (301)
T ss_pred EEEEEeC--------CeeEEecCcCcccc---ccchHHHHHHHHHHHHHH
Confidence 8777632 23456777655442 234455555555544443
No 46
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=68.27 E-value=41 Score=37.83 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHH
Q 009360 129 GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVA 208 (536)
Q Consensus 129 ~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~v 208 (536)
...|..|.+.|.+..... .+.+.+---|.. ...+++.+.++++. .|+. .+++|+.. +| .++
T Consensus 117 ~~~l~~l~~~a~~~~~~~---~~~~vitVPa~~---~~~qr~~~~~Aa~~----agl~----~~~li~Ep-~A----aa~ 177 (602)
T PF00012_consen 117 AMILKYLKEMAEKYLGEK---VTDVVITVPAYF---TDEQRQALRDAAEL----AGLN----VLRLINEP-TA----AAL 177 (602)
T ss_dssp HHHHHHHHHHHHHHHTSB---EEEEEEEE-TT-----HHHHHHHHHHHHH----TT-E----EEEEEEHH-HH----HHH
T ss_pred ccchhhhcccchhhcccc---cccceeeechhh---hhhhhhcccccccc----cccc----cceeeccc-cc----ccc
Confidence 456667777776654221 233444444432 23567777777664 3664 25777533 22 244
Q ss_pred HHhhccCCCCCCCceEEEeeCCceeEEEeecCCCCCccceeeEEecCeeEEEEEe-ecccccHHHHHHHHHHHhc
Q 009360 209 NYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSH-SFLHFGQNVAFETLRELLS 282 (536)
Q Consensus 209 Nyllg~l~~~~~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~y~vYth-SfLgyG~~~Ar~~~l~~l~ 282 (536)
.|.+..-. ..+++.++|+|||++.++...-. +..+.|-.+ .-...|.+..-+++.+++.
T Consensus 178 ~y~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~-------------~~~~~v~~~~~~~~lGG~~~D~~l~~~~~ 237 (602)
T PF00012_consen 178 AYGLERSD--KGKTVLVVDFGGGTFDVSVVEFS-------------NGQFEVLATAGDNNLGGRDFDEALAEYLL 237 (602)
T ss_dssp HTTTTSSS--SEEEEEEEEEESSEEEEEEEEEE-------------TTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred cccccccc--cccceeccccccceEeeeehhcc-------------cccccccccccccccccceecceeecccc
Confidence 56554322 24578999999999999986422 113333333 3356777776666666554
No 47
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=66.88 E-value=92 Score=35.70 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=56.7
Q ss_pred cchH-HHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchh
Q 009360 125 PTNA-GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (536)
Q Consensus 125 p~~a-~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y 203 (536)
|+.+ +..|+.|.+.|.+.... ..+.+.+---|.+- ..++++++++++. .|+. -+++|+...=+.+
T Consensus 110 peel~a~iL~~lk~~ae~~~g~---~v~~~VItVPa~f~---~~qR~a~~~Aa~~----AGl~----v~~li~EptAAAl 175 (627)
T PRK00290 110 PQEISAMILQKLKKDAEDYLGE---KVTEAVITVPAYFN---DAQRQATKDAGKI----AGLE----VLRIINEPTAAAL 175 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---CCceEEEEECCCCC---HHHHHHHHHHHHH----cCCc----eEEEecchHHHHH
Confidence 4444 45677777777776532 23345544444442 3567777776664 2663 3577776655544
Q ss_pred HHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 204 ~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
+ |.+.. +...++.++|+|||++.++...
T Consensus 176 ~-----y~~~~---~~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 176 A-----YGLDK---KGDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred H-----hhhcc---CCCCEEEEEECCCCeEEEEEEE
Confidence 3 44332 1346789999999999998754
No 48
>PLN03184 chloroplast Hsp70; Provisional
Probab=66.19 E-value=94 Score=36.11 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHH
Q 009360 129 GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVA 208 (536)
Q Consensus 129 ~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~v 208 (536)
...|+.|.+.|++.... ..+.+.+---|.+- ..+++++.++.+. .||. -+++|+...=+. +
T Consensus 154 a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~---~~qR~a~~~Aa~~----AGl~----v~~li~EPtAAA-----l 214 (673)
T PLN03184 154 AQVLRKLVDDASKFLND---KVTKAVITVPAYFN---DSQRTATKDAGRI----AGLE----VLRIINEPTAAS-----L 214 (673)
T ss_pred HHHHHHHHHHHHHHhCC---CCCeEEEEECCCCC---HHHHHHHHHHHHH----CCCC----eEEEeCcHHHHH-----H
Confidence 45677777777765432 23445555555442 3566666666653 3663 367776654433 3
Q ss_pred HHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 209 NYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 209 Nyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
.|.+.. ...+++.++|||||++.|+...
T Consensus 215 ayg~~~---~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 215 AYGFEK---KSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred Hhhccc---CCCCEEEEEECCCCeEEEEEEE
Confidence 444332 2345788999999999998753
No 49
>PTZ00280 Actin-related protein 3; Provisional
Probab=65.65 E-value=69 Score=34.61 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=15.4
Q ss_pred ceEEEeeCCceeEEEeecC
Q 009360 222 TTGIIELGGASVQVTFVSD 240 (536)
Q Consensus 222 t~G~lDlGGaStQItf~~~ 240 (536)
|.-+||+|.+.|+|+-..+
T Consensus 161 tglVVDiG~~~T~i~PV~~ 179 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVD 179 (414)
T ss_pred eEEEEECCCCceEEEEEEC
Confidence 4458999999999987654
No 50
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=64.11 E-value=21 Score=39.75 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=39.0
Q ss_pred ceEEEEEEcCCcceEEEEEEEeCCCCccccccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 009360 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (536)
Q Consensus 78 ~~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k---v~pGLss~~~~p~~a~~~l~~ll~~a~~~I 143 (536)
.+|.++||+|+|++|..+|.-..+. .+........ -.||=+ ..||+...+.+..+++.+.+..
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~~~~-~~~~~~~~~~~~~~~~g~~--e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDEDGGE-VVATARFENPVSTPQPGWA--EQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCCCCe-EEEEeeccccccCCCCCCc--ccCHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999865311 2211111111 123322 3488887777777777666653
No 51
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=62.31 E-value=7.7 Score=35.17 Aligned_cols=8 Identities=13% Similarity=-0.023 Sum_probs=3.0
Q ss_pred chhHHHHH
Q 009360 490 SPTLLSLI 497 (536)
Q Consensus 490 ~~~~~~~~ 497 (536)
|+.+++|+
T Consensus 2 W~l~~iii 9 (130)
T PF12273_consen 2 WVLFAIII 9 (130)
T ss_pred eeeHHHHH
Confidence 33333333
No 52
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=62.05 E-value=10 Score=38.17 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=41.2
Q ss_pred EEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcccC-CCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeechh
Q 009360 83 LLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYA-VNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGL 161 (536)
Q Consensus 83 VIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss~~-~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGm 161 (536)
=||+|+|+||+.++.-.. + .+ ...+. .+ +++. .+.+++.+.|...++.+.+..+......+-+. .+.+|.
T Consensus 2 GIDgGgTkt~~vl~d~~g-~-il----~~~~~-~~-~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~-~g~aG~ 72 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDENG-N-IL----GRGKG-GG-ANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAIC-IGAAGY 72 (271)
T ss_dssp EEEECSSEEEEEEEETTS-E-EE----EEEEE-S--TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEE-EEEEEE
T ss_pred EEeeChheeeeEEEeCCC-C-EE----EEEEe-CC-CCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceee-eeEeee
Confidence 489999999999997322 1 11 11111 22 2222 23566777888888888777665543333343 444444
Q ss_pred cc
Q 009360 162 RL 163 (536)
Q Consensus 162 Rl 163 (536)
=.
T Consensus 73 ~~ 74 (271)
T PF01869_consen 73 GR 74 (271)
T ss_dssp EE
T ss_pred cC
Confidence 33
No 53
>PRK04123 ribulokinase; Provisional
Probab=59.86 E-value=28 Score=39.10 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=35.3
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCCCccccccceee-------cCCCCcccCCCcchHHHHHHHHHHHHHH
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR-------LNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k-------v~pGLss~~~~p~~a~~~l~~ll~~a~~ 141 (536)
.|.+.||+|+|++|+.||....++ .+........ ..|.-.-...+|+...+.+..+++.+.+
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~ 71 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCATGE-ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLK 71 (548)
T ss_pred cEEEEEecCCCceEEEEEECCCCc-EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHH
Confidence 477899999999999999853333 1110000000 0122222355788777766666666543
No 54
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=59.22 E-value=1.3e+02 Score=31.38 Aligned_cols=20 Identities=15% Similarity=0.463 Sum_probs=16.3
Q ss_pred CceEEEeeCCceeEEEeecC
Q 009360 221 ETTGIIELGGASVQVTFVSD 240 (536)
Q Consensus 221 ~t~G~lDlGGaStQItf~~~ 240 (536)
..+.++|+|||.|+|+....
T Consensus 147 ~~~lVvDiGggttdvsvv~~ 166 (336)
T PRK13928 147 SGNMVVDIGGGTTDIAVLSL 166 (336)
T ss_pred CeEEEEEeCCCeEEEEEEEe
Confidence 34678999999999988753
No 55
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=58.67 E-value=28 Score=38.98 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=36.3
Q ss_pred EEEEEEcCCcceEEEEEEEeCCCCcccc--cccee------ec------CCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTETNHFDF--DLGSM------RL------NPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~~~~~~--~~~~~------kv------~pGLss~~~~p~~a~~~l~~ll~~a~~~I 143 (536)
|.+.||+|+|++|.-||....++ .+.. +.... .- .||- ...||+...+.+..+++.+.+..
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~g~--~Eqdp~~~w~~~~~~~~~~~~~~ 76 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE-EIATAVEWYRHWVKGQFLPKTGAKLPNDQ--ALQHPADYIEVLEAAIPTVLAEL 76 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc-EeeeeeeccccccccccCCCccccCCCCc--cccCHHHHHHHHHHHHHHHHHHc
Confidence 66889999999999999843322 1110 00100 00 1343 34578887777777777665543
No 56
>PLN02295 glycerol kinase
Probab=57.07 E-value=28 Score=38.75 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=36.6
Q ss_pred EEEEEEcCCcceEEEEEEEeCCCCcccc--cccee-ecCCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTETNHFDF--DLGSM-RLNPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~~~~~~--~~~~~-kv~pGLss~~~~p~~a~~~l~~ll~~a~~~I 143 (536)
|.+.||+|+|++|..||.-+ ++ .+.. ..... .-.||-. ..||+...+.+..+++.+.+..
T Consensus 1 ~vlgID~GTts~Ka~l~d~~-G~-~~~~~~~~~~~~~~~~G~~--Eqdp~~~w~~~~~~i~~~~~~~ 63 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRD-AR-PVASHQVEFTQIYPQAGWV--EHDPMEILESVLTCIAKALEKA 63 (512)
T ss_pred CEEEEecCCCceEEEEECCC-CC-EEEEEeecccccCCCCCcE--eeCHHHHHHHHHHHHHHHHHHc
Confidence 45789999999999999732 22 2211 00110 1134543 4588888777777777766554
No 57
>PRK10331 L-fuculokinase; Provisional
Probab=57.00 E-value=31 Score=37.86 Aligned_cols=62 Identities=10% Similarity=-0.019 Sum_probs=36.8
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCCCcccc--ccceeec-CCCCcccCCCcchHHHHHHHHHHHHHHh
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDF--DLGSMRL-NPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~--~~~~~kv-~pGLss~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
+|.+.||+|+|++|..+|.-+. + .+.. ......+ .|.-.....||+...+.+..+++.+.+.
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G-~-~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~ 66 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQG-K-IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE 66 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCC-c-EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh
Confidence 3778999999999999997432 2 1211 0011111 1222223458888777777777776554
No 58
>PF13941 MutL: MutL protein
Probab=56.98 E-value=28 Score=38.49 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=45.4
Q ss_pred EEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCC-CCCceEEEEee--
Q 009360 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAF-WADTEIRLMAT-- 158 (536)
Q Consensus 82 iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~-~~~Tpv~l~AT-- 158 (536)
+++|+|||-|++.++....+.+.+- . + .....+- .|+++...+..+++..++..|... .....++.-..
T Consensus 3 L~~DiGST~Tk~~l~d~~~~~~~~i---g--~-a~apTTv--~~~Dv~~G~~~A~~~l~~~~~~~~~~~~~~~la~SSAa 74 (457)
T PF13941_consen 3 LVVDIGSTYTKVTLFDLVDGEPRLI---G--Q-AEAPTTV--EPGDVTIGLNNALEQLEEQTPASPDDGYDKVLACSSAA 74 (457)
T ss_pred EEEEeCCcceEEeEEeccCCccEEE---E--E-EeCCCCc--CcccHHHHHHHHHHHHHHhcCCCcccCceEEEEECCCC
Confidence 6899999999999998544443321 0 0 0111222 235777788888888888887643 33333333222
Q ss_pred chhccc
Q 009360 159 AGLRLV 164 (536)
Q Consensus 159 AGmRlL 164 (536)
.|||+.
T Consensus 75 GGLrmv 80 (457)
T PF13941_consen 75 GGLRMV 80 (457)
T ss_pred CcceEE
Confidence 288874
No 59
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=56.83 E-value=24 Score=38.68 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=38.1
Q ss_pred EEEEEEcCCcceEEEEEEEeCCCCcccc--cccee---ecCCCCcccCCCcchHHHHHHHHHHHHHHhCC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTETNHFDF--DLGSM---RLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVP 144 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~~~~~~--~~~~~---kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP 144 (536)
|.+.||+|+|++|+.|+..+ ++ .+.. ..... ...||-. ..||+...+.+..+++.+...++
T Consensus 2 ~ilgiD~GTss~K~~l~d~~-g~-~va~~~~~~~~~~~~~~~g~~--eqd~~~~w~~~~~~~~~l~~~~~ 67 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ-GK-IVASASTPNATKQAIENNDYH--IWDLEAIWQKLADCCQQINSELT 67 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC-CC-EEEEEecccccCCCCCCCCce--eeCHHHHHHHHHHHHHHHHhhcC
Confidence 56789999999999999853 22 2211 00011 1234433 44888888888888877764443
No 60
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=54.12 E-value=34 Score=38.13 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=35.5
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCCCcccc--ccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDF--DLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~--~~~~~k---v~pGLss~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
+|.+.||+|+|++|+.+|..+ ++ .+.. ...... ..||- ...||+...+.+..++..+.+.
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~-G~-~l~~~~~~~~~~~~~~~~g~--~Eqd~~~~w~~~~~~l~~~~~~ 67 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN-GN-QIAVGQAEWRHLAVPDVPGS--MEFDLEKNWQLACQCIRQALQK 67 (520)
T ss_pred cEEEEEecCCCceEEEEECCC-CC-EEEEEeccccccCCCCCCCC--eeECHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999853 22 2211 000111 11332 3447887777776666665533
No 61
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=53.16 E-value=8 Score=34.38 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=30.4
Q ss_pred EEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcc-cCCCcchHHHHHHHHHHHHHHh
Q 009360 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSS-YAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 82 iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss-~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
++||.||+.|++.||+-.... .+..-.....-.-|+.. ...|.+++.+.|+..++.|++.
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~-~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~ 62 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG-YIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEAERL 62 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE-EEEEES----------HHHHH--HHHHHHHT--HHHHHHH
T ss_pred EEEEcCCCcEEEEEEEeCCCC-cEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHHHHH
Confidence 689999999999999863211 11110000001133332 2337788888888888888776
No 62
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=52.11 E-value=61 Score=30.87 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred EEEEcCCcceEEEEEEEeC-CCCccccccceeec-CCCCcc-cCCCcchHHHHHHHHHHHHHHhCCC
Q 009360 82 VLLDGGSTGTRIHVFSYDT-ETNHFDFDLGSMRL-NPGLSS-YAVNPTNAGDSLKDLLDFAKRKVPP 145 (536)
Q Consensus 82 iVIDaGSsgtRl~Vy~~~~-~~~~~~~~~~~~kv-~pGLss-~~~~p~~a~~~l~~ll~~a~~~IP~ 145 (536)
+.||.||+.+++.+-+... ++..+. ..... ..|+.. -..|.+.+.+.++.+++.|++..+.
T Consensus 2 ~~lDIGs~~ik~vv~~~~~~~~~~i~---g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~ 65 (187)
T smart00842 2 VGLDIGTSKIKALVAEVDEDGEINVI---GVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGV 65 (187)
T ss_pred EEEEeccceEEEEEEEEcCCCCEEEE---EEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCC
Confidence 5899999999999998764 222221 11111 123332 2337889999999999999887643
No 63
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=50.02 E-value=48 Score=36.79 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=36.3
Q ss_pred EEEEEEcCCcceEEEEEEEeCCCCcccccccee---ecCCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSM---RLNPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~---kv~pGLss~~~~p~~a~~~l~~ll~~a~~~I 143 (536)
|.+.||+|+|++|..||.-+ ++ .+....... ...||- ...||+...+.+..+++.+.+.+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~-G~-~v~~~~~~~~~~~~~~g~--~eqd~~~~~~~~~~~l~~~~~~~ 65 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEK-GN-VVSSHQIPHEQITPHPGW--LEHDPEEILRNVYKCMNEAIKKL 65 (504)
T ss_pred EEEEEecCCCceEEEEECCC-CC-EEEEEEEeecccCCCCCe--EeeCHHHHHHHHHHHHHHHHHHc
Confidence 77889999999999999743 22 221100111 123453 24578877777777766665443
No 64
>PRK11678 putative chaperone; Provisional
Probab=49.62 E-value=1.8e+02 Score=32.18 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEEeechhccc--ChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHH
Q 009360 129 GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLV--DVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWI 206 (536)
Q Consensus 129 ~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL--~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv 206 (536)
...|..|.+.|+..+.. ..+.+.+.--+...-. ++.++++ .+.+++..+.-||. .+++|+...=+.++|
T Consensus 131 a~iL~~lk~~ae~~~g~---~v~~~VItvPa~F~~~~~~~~qr~a-~~~l~~Aa~~AG~~----~v~li~EPtAAAl~y- 201 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQA---AITQAVIGRPVNFQGLGGEEANRQA-EGILERAAKRAGFK----DVEFQFEPVAAGLDF- 201 (450)
T ss_pred HHHHHHHHHHHHHHhCC---CCCcEEEEECCccccCCcchhHHHH-HHHHHHHHHHcCCC----EEEEEcCHHHHHHHh-
Confidence 34556666666665421 1234444444443311 1222222 11122222234774 478888666665544
Q ss_pred HHHHhhccCCCCCCCceEEEeeCCceeEEEeecCCCCCccceeeEEecCeeEEEEEeecccccHHHHHHHHH
Q 009360 207 VANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLR 278 (536)
Q Consensus 207 ~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l 278 (536)
... + +..+++.++|+|||.+.++...-.+. . ..-.....+|.+|+-...|.+..=.++.
T Consensus 202 ----~~~-~--~~~~~vlV~D~GGGT~D~Svv~~~~~---~---~~~~~r~~~vla~~G~~lGG~DfD~~L~ 260 (450)
T PRK11678 202 ----EAT-L--TEEKRVLVVDIGGGTTDCSMLLMGPS---W---RGRADRSASLLGHSGQRIGGNDLDIALA 260 (450)
T ss_pred ----ccc-c--CCCCeEEEEEeCCCeEEEEEEEecCc---c---cccCCcceeEEecCCCCCChHHHHHHHH
Confidence 111 1 23467899999999999988643211 0 0011234578888877889888766654
No 65
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=48.15 E-value=15 Score=40.09 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=18.2
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCC
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTET 102 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~ 102 (536)
+||+.||.|+|+.+.+++....++
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~ 24 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGE 24 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--
T ss_pred CEEEEEEcchhheeeEEEECCCCC
Confidence 599999999999999999876543
No 66
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=47.00 E-value=2.7e+02 Score=32.24 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=54.7
Q ss_pred cchH-HHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchh
Q 009360 125 PTNA-GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (536)
Q Consensus 125 p~~a-~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y 203 (536)
|+++ +..|..|.+.|++.... ..+.+.+---|.. ...+++++.++++. .||. -+++|+...=+.+
T Consensus 117 peel~a~iL~~lk~~ae~~~g~---~v~~~VItVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EptAAAl 182 (653)
T PTZ00009 117 PEEISSMVLQKMKEIAEAYLGK---QVKDAVVTVPAYF---NDSQRQATKDAGTI----AGLN----VLRIINEPTAAAI 182 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---CcceeEEEeCCCC---CHHHHHHHHHHHHH----cCCc----eeEEecchHHHHH
Confidence 4444 34566666777665421 2334444444443 23566776666664 3664 3678876654443
Q ss_pred HHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeec
Q 009360 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 204 ~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~ 239 (536)
.|.+..-. ....++.++|+|||++.|+...
T Consensus 183 -----~y~~~~~~-~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 183 -----AYGLDKKG-DGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred -----HHhhhccC-CCCCEEEEEECCCCeEEEEEEE
Confidence 34432211 1235789999999999998754
No 67
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=44.61 E-value=51 Score=36.46 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=35.9
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCCCccccccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k---v~pGLss~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
.|.+.||+|+|++|+.+|.-. ++ .+........ -.||-. ..+|+...+.+..+++.+.+.
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~-g~-~l~~~~~~~~~~~~~~g~~--e~d~~~~~~~i~~~i~~~~~~ 63 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKD-GN-IVAIHQKEFTQIFPKPGWV--EHDPMEIWESVLSCIAEALAK 63 (493)
T ss_pred CeEEEEecCCCceEEEEECCC-CC-EEEEEeeeccccCCCCCcE--eeCHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999733 22 2211000011 123422 347888777777777776554
No 68
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=43.88 E-value=1.7e+02 Score=30.85 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=29.8
Q ss_pred CceEEEeeCCceeEEEeecCCCCCccceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhc
Q 009360 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLS 282 (536)
Q Consensus 221 ~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~ 282 (536)
..+++||+||+.|.++....-... .-.+.| +-.|...+.+.+.+.+.
T Consensus 185 ~~ilvIDIG~~TtD~~v~~~~~~~--------------~~~s~s-~~~G~~~~~~~I~~~i~ 231 (344)
T PRK13917 185 GKVSVIDFGSGTTDLDTIQNLKRV--------------EEESFV-IPKGTIDVYKRIASHIS 231 (344)
T ss_pred CcEEEEEcCCCcEEEEEEeCcEEc--------------cccccc-ccchHHHHHHHHHHHHH
Confidence 467999999999999765321100 011122 33788888888777663
No 69
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=42.50 E-value=43 Score=28.71 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=6.9
Q ss_pred CCccccccCCCC
Q 009360 14 MDPIKLHTRPLT 25 (536)
Q Consensus 14 ~~~~~~~~~~~~ 25 (536)
||+.+.++.|+.
T Consensus 1 M~~~~~~~~~~~ 12 (91)
T PF01708_consen 1 MDSAKYQPFPSP 12 (91)
T ss_pred CCcccccCCCCc
Confidence 566666655433
No 70
>PRK15027 xylulokinase; Provisional
Probab=42.39 E-value=65 Score=35.54 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=36.4
Q ss_pred EEEEEcCCcceEEEEEEEeCCCCccccccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 009360 81 GVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (536)
Q Consensus 81 ~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k---v~pGLss~~~~p~~a~~~l~~ll~~a~~~I 143 (536)
.+.||+|+|++|..+|.- .++ .+........ ..|| ....||+...+.+..+++.+.+..
T Consensus 2 ~lgID~GTts~Ka~l~d~-~G~-vva~~~~~~~~~~~~~g--~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE-QGE-VVASQTEKLTVSRPHPL--WSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred EEEEEecccceEEEEEcC-CCC-EEEEEeecccccCCCCC--ccccCHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999973 232 2211001111 1234 345688888788888777776544
No 71
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=41.37 E-value=66 Score=35.67 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=35.2
Q ss_pred EEEEEEcCCcceEEEEEEEeCCCCccccccceeec-CCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRL-NPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv-~pGLss~~~~p~~a~~~l~~ll~~a~~~I 143 (536)
|.+.||+|+|++|+.|+.- .++ .+.......+. .|.-.....+|+...+.+..+++.+.+..
T Consensus 1 ~~lgiDiGtt~~K~~l~d~-~g~-i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~ 63 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE-NGK-IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL 63 (505)
T ss_pred CEEEEeccccceEEEEEcC-CCC-EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999973 222 22100011111 11112234577777777777777665544
No 72
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=40.63 E-value=24 Score=34.80 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcceeeeecCceEEE
Q 009360 493 LLSLIALSIMLMVIAWSISKWRKPQLKTIYDLEKGRYII 531 (536)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~r~~~~k~~~d~~~~~~~~ 531 (536)
-..+|+|+++ ++.+++..++++|..++-||-+-|+=.+
T Consensus 60 g~sllsli~V-tvaalYsSC~~~pg~~~~f~~de~~~ll 97 (235)
T PF11359_consen 60 GFSLLSLIVV-TVAALYSSCCRRPGRLTRFDDDEAVNLL 97 (235)
T ss_pred hHHHHHHHHH-HHHHHHHHHHhCCCcccccChhhhhccc
Confidence 3456776644 4455678999999999999988776544
No 73
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=39.58 E-value=54 Score=36.39 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=40.2
Q ss_pred ceEEEEEEcCCcceEEEEEEEeCCCCcccc-ccceeec--CCCCcccCCCcchHHHHHHHHHHHHHHh
Q 009360 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDF-DLGSMRL--NPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 78 ~~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~-~~~~~kv--~pGLss~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
.+|.+.||.|.|+||..||.-+.+ .+.. +....+. +||=. ..||.++.++....++.|...
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~--iva~~q~e~~Q~yP~~GWV--EhDp~eIw~~~~~~l~~a~~~ 67 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGN--IVAIAQREFTQIYPQPGWV--EHDPLEIWASVRSVLKEALAK 67 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCC--chhhhhhhhhhhCCCCCcc--ccCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999964432 1111 1111222 45643 458999888887777776443
No 74
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=38.78 E-value=98 Score=32.65 Aligned_cols=105 Identities=9% Similarity=0.151 Sum_probs=57.3
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHH---HHHHHHhhcccCccccCCceEEcCCcc
Q 009360 123 VNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKI---LDSCRRVLRVSGFRFADDWATVITGSD 199 (536)
Q Consensus 123 ~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~i---l~~v~~~l~~~~F~f~~~~~~VIsG~e 199 (536)
+++++..+.|..+++ .++. ...+-+-=|+-|=..=+++++-| ++.+.+.+.. ++.|-.++-.+++-++
T Consensus 33 ~~~~~L~~~l~~~~~----~~~~----~~~~avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~-~~~i~~s~GG~~s~~~ 103 (318)
T TIGR03123 33 KGNDKLAETLKEISQ----DLSS----ADNVAVTMTGELADCFEDKAEGVEFILAAVESAFGS-PVSVFASDGGFVSAEE 103 (318)
T ss_pred CCchHHHHHHHHHHH----hcCc----cceEEEEeehhhhhhhcCHHHHHHHHHHHHHHhcCC-CeEEEecCCCCccHHH
Confidence 345555555555544 2322 13566677887766555555544 6667776633 4433222222222221
Q ss_pred cchh-------HHHH-HHHhhccCCCCCCCceEEEeeCCceeEEEeecCC
Q 009360 200 EGVY-------AWIV-ANYALGTLGGDPSETTGIIELGGASVQVTFVSDE 241 (536)
Q Consensus 200 Eg~y-------~Wv~-vNyllg~l~~~~~~t~G~lDlGGaStQItf~~~~ 241 (536)
=..+ +|++ +.++ +.. .+..-.+||||-||-|+...+.
T Consensus 104 a~~~pv~~~~Sg~~a~A~~l-a~~----~~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 104 ALTNPLDVAAANWLATAQLI-AKR----IPECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred HHHhHHHHHHhhHHHHHHHH-Hhc----CCCEEEEEcCccceeeEEecCC
Confidence 1111 6887 5554 321 3457899999999999987653
No 75
>PRK09213 pur operon repressor; Provisional
Probab=37.40 E-value=58 Score=33.55 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=47.7
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccCh---hhHHHHHHHHHHhhcccC
Q 009360 118 LSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDV---VVQDKILDSCRRVLRVSG 184 (536)
Q Consensus 118 Lss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~---~~~~~il~~v~~~l~~~~ 184 (536)
|+.|++.=+.|.-++.+=+.-.++.......+.-...-+|..|.|..|. ++++++++.+.+.|.+..
T Consensus 26 l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~~~ 95 (271)
T PRK09213 26 LTFFAERYGAAKSSISEDLVIIKETFEKQGIGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSEPD 95 (271)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHhCC
Confidence 5666666666666666655555555544556666788899999999994 778899998888776543
No 76
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=37.40 E-value=2.1e+02 Score=29.71 Aligned_cols=19 Identities=21% Similarity=0.611 Sum_probs=16.0
Q ss_pred CceEEEeeCCceeEEEeec
Q 009360 221 ETTGIIELGGASVQVTFVS 239 (536)
Q Consensus 221 ~t~G~lDlGGaStQItf~~ 239 (536)
.++.++|+||+.|+++...
T Consensus 150 ~~~lVvDiG~gttdvs~v~ 168 (333)
T TIGR00904 150 TGSMVVDIGGGTTEVAVIS 168 (333)
T ss_pred ceEEEEEcCCCeEEEEEEE
Confidence 3567899999999999874
No 77
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=37.06 E-value=1.2e+02 Score=34.24 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=39.1
Q ss_pred ceEEEEEEcCCcceEEEEEEEeCCCCcccc---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 009360 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDF---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 78 ~~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~---~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
..|.|-||.||.+-|..||....++ .+.. .....+..+.++ .++|++..+.+...+..+.+.
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~-~la~a~~p~~~~~~~~~~~--~q~s~d~~~av~~aVr~~v~~ 66 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGT-LLARAVRPYPMWQPGSNLA--EQHSRDYWEAVCAAVRDVVAK 66 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCc-chhhcccceeccccCcccc--ccCHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999887543 2211 111123334443 467887776666666655443
No 78
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=36.52 E-value=79 Score=35.52 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=34.7
Q ss_pred EEEEEcCCcceEEEEEEEeCCCCccccccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 009360 81 GVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 81 ~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k---v~pGLss~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
.+.||+|+|++|+.||.-+ ++ .+.......+ -.||- ...+|+...+.+..+++.+.+.
T Consensus 2 ~lgID~GTts~Ka~l~d~~-G~-i~~~~~~~~~~~~~~~g~--~eqdp~~~~~~~~~~i~~~~~~ 62 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST-GD-ILALAAQNIKTWTPSSGL--EGQSSVYIWQAICNCVKQVLAE 62 (541)
T ss_pred EEEEEecCcCEEEEEEcCC-CC-EEEEEEeeeeeccCCCCc--ccCCHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999732 22 2211000111 12343 3458888777777777766554
No 79
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=35.95 E-value=31 Score=30.56 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 009360 493 LLSLIALSIMLMVIAWSISKWRK 515 (536)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~r~ 515 (536)
++.+|++++++++++ .++.||.
T Consensus 3 Ll~il~llLll~l~a-sl~~wr~ 24 (107)
T PF15330_consen 3 LLGILALLLLLSLAA-SLLAWRM 24 (107)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH
Confidence 445555554444333 3555544
No 80
>PF15102 TMEM154: TMEM154 protein family
Probab=35.68 E-value=23 Score=33.10 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcce
Q 009360 493 LLSLIALSIMLMVIAWSISKWRKPQLKT 520 (536)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~r~~~~k~ 520 (536)
+++++.+.++++++++++.+.||.+.|.
T Consensus 62 lIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 62 LIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred eHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 3343333333333344455555555443
No 81
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=35.24 E-value=5.3e+02 Score=29.46 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=70.6
Q ss_pred CcchH-HHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccch
Q 009360 124 NPTNA-GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGV 202 (536)
Q Consensus 124 ~p~~a-~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~ 202 (536)
.|+++ ...|..|.+.|...++.. .+-+.+.--|-. ...++++..++.+ ..||. .+|+|+--.=|.
T Consensus 96 ~~eeisa~~L~~lk~~ae~~lg~~---v~~~VItVPayF---~d~qR~at~~A~~----iaGl~----vlrlinEPtAAA 161 (579)
T COG0443 96 TPEEISAMILTKLKEDAEAYLGEK---VTDAVITVPAYF---NDAQRQATKDAAR----IAGLN----VLRLINEPTAAA 161 (579)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCC---cceEEEEeCCCC---CHHHHHHHHHHHH----HcCCC----eEEEecchHHHH
Confidence 35554 467888888888887644 233444333322 2234444433333 34664 367887665555
Q ss_pred hHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEeecCCCCCccceeeEEecCeeEEEEEeecccccHHHHHHHHHHHhc
Q 009360 203 YAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLS 282 (536)
Q Consensus 203 y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~l~~l~ 282 (536)
|+| .+.. ....++.++|+|||.+-++...-.. |.--.+=++.-..+|.+..-.++...+.
T Consensus 162 lay-----g~~~---~~~~~vlV~DlGGGTfDvSll~~~~------------g~~ev~at~gd~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 162 LAY-----GLDK---GKEKTVLVYDLGGGTFDVSLLEIGD------------GVFEVLATGGDNHLGGDDFDNALIDYLV 221 (579)
T ss_pred HHh-----Hhcc---CCCcEEEEEEcCCCCEEEEEEEEcC------------CEEEEeecCCCcccCchhHHHHHHHHHH
Confidence 554 3221 1346899999999999888764321 1111223344456666666666666555
Q ss_pred c
Q 009360 283 S 283 (536)
Q Consensus 283 ~ 283 (536)
+
T Consensus 222 ~ 222 (579)
T COG0443 222 M 222 (579)
T ss_pred H
Confidence 3
No 82
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=32.64 E-value=2.4e+02 Score=30.66 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=62.6
Q ss_pred CCceEEEEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEE
Q 009360 76 SSVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRL 155 (536)
Q Consensus 76 ~~~~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l 155 (536)
....+.+=||+|||+|.+.+.+-. + .+. .......+|. |. +.+.++..+++ ++... ..-..+
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d~--~-~I~--~~~~~~t~g~------p~-~~~~l~~~le~----l~~~~--~~I~~~ 193 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMEDG--K-EIL--YGFYVSTKGR------PI-AEKALKEALEE----LGEKL--EEILGL 193 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeCC--C-eEE--EEEEEcCCCC------hh-HHHHHHHHHHH----cccCh--heeeee
Confidence 345677899999999999998632 2 221 1223334553 33 44445554444 43332 233555
Q ss_pred EeechhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEE
Q 009360 156 MATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQV 235 (536)
Q Consensus 156 ~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQI 235 (536)
++|.==|.+ +...+ +.+ -+.+|-.=-..|+.|+.. +.-.+||+||=-+-+
T Consensus 194 ~~TGYGR~~-----------v~~~~---~aD---------~~~~Ei~ah~kgA~~f~p-------~~dtIiDIGGQD~K~ 243 (396)
T COG1924 194 GVTGYGRNL-----------VGAAL---GAD---------KVVVEISAHAKGARYFAP-------DVDTVIDIGGQDSKV 243 (396)
T ss_pred eeecccHHH-----------hhhhh---cCC---------cceeeeehhHHHHHHhCC-------CCcEEEEecCcceeE
Confidence 666533332 11111 111 144565556678888743 223899999976666
Q ss_pred Eeec
Q 009360 236 TFVS 239 (536)
Q Consensus 236 tf~~ 239 (536)
.-..
T Consensus 244 i~i~ 247 (396)
T COG1924 244 IKLE 247 (396)
T ss_pred EEEe
Confidence 5543
No 83
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=32.60 E-value=4.7e+02 Score=27.32 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=58.4
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcccCCCcc-hHHHHHHHHHHHHHHhCCCCCCCCceEEEEe
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPT-NAGDSLKDLLDFAKRKVPPAFWADTEIRLMA 157 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss~~~~p~-~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~A 157 (536)
.|.+=||+||+.|.+.|.+ + +. .+. ...+.- ..+|. .+.+.|..+++.+. .. ...--++.+
T Consensus 32 m~~~GIDiGStt~K~Vlld-~-~~-i~~----~~~~~t-----g~~~~~~a~~~l~~~l~~~g----~~--~~~v~~~~~ 93 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-D-GE-LYG----YNSMRT-----GNNSPDSAKNALQGIMDKIG----MK--LEDINYVVG 93 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-C-CE-EEE----EEeecC-----CCCHHHHHHHHHHHHHHHcC----Cc--ccceEEEEE
Confidence 5778999999999999996 2 21 111 111111 22343 33455555555432 11 112345677
Q ss_pred echhcccChhhHHHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCCCCceEEEeeCCceeEEEe
Q 009360 158 TAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTF 237 (536)
Q Consensus 158 TAGmRlL~~~~~~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~~~t~G~lDlGGaStQItf 237 (536)
|.-=|.+= +| .+ ++ ..|=.-.=.+++|+.+ .++-.+||+||=-+-+.+
T Consensus 94 TGyGr~~~------------------~~--a~---~~---v~EItaha~Ga~~~~p------p~v~tIIDIGGQDsK~I~ 141 (293)
T TIGR03192 94 TGYGRVNV------------------PF--AH---KA---ITEIACHARGANYMGG------NAVRTILDMGGQDCKAIH 141 (293)
T ss_pred ECcchhhc------------------ch--hh---cc---eeeHHHHHHHHHHhcC------CCCCEEEEeCCCceEEEE
Confidence 87445420 12 11 11 1243334456677642 234579999998887766
Q ss_pred e
Q 009360 238 V 238 (536)
Q Consensus 238 ~ 238 (536)
.
T Consensus 142 ~ 142 (293)
T TIGR03192 142 C 142 (293)
T ss_pred E
Confidence 5
No 84
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=32.13 E-value=60 Score=35.45 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred EEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcc----cCCCcchHHHHHHHHHHHHHH
Q 009360 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSS----YAVNPTNAGDSLKDLLDFAKR 141 (536)
Q Consensus 82 iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss----~~~~p~~a~~~l~~ll~~a~~ 141 (536)
+.||+|+|++|+.++.++.+...+.. ....+..|+... ...||+...+.+..+++.+.+
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTL-EEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEE-EEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 46999999999999998743112210 011122233221 233677777777777776654
No 85
>PRK00047 glpK glycerol kinase; Provisional
Probab=31.24 E-value=1e+02 Score=34.03 Aligned_cols=60 Identities=25% Similarity=0.263 Sum_probs=35.1
Q ss_pred eEEEEEEcCCcceEEEEEEEeCCCCcccc--cccee-ecCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 009360 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDF--DLGSM-RLNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (536)
Q Consensus 79 ~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~--~~~~~-kv~pGLss~~~~p~~a~~~l~~ll~~a~~~ 142 (536)
+|.+.||+|+|++|+.+|..+. + .+.. ..... ...||.+ ..+|+...+.+..+++.+.+.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~g-~-~~~~~~~~~~~~~~~~g~~--e~d~~~~~~~~~~~~~~~~~~ 67 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHDG-N-IVSVAQKEFTQIFPQPGWV--EHDPNEIWASQLSVIAEALAK 67 (498)
T ss_pred CEEEEEecCCCceEEEEECCCC-C-EEEEEeeeccccCCCCCeE--eeCHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999997432 2 2211 00000 1123432 347887776666666665543
No 86
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.86 E-value=19 Score=31.36 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=18.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhhhccCCc
Q 009360 486 ISDDSPTLLSLIALSIMLMVIAWSISKWRKPQL 518 (536)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 518 (536)
....+.+++.+||+++++.+|.. +..+|..|.
T Consensus 61 ~~iili~lls~v~IlVily~IyY-FVILRer~~ 92 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYY-FVILRERQK 92 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheE-EEEEecccc
Confidence 34466777778887766655544 444444443
No 87
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=27.91 E-value=1.1e+02 Score=31.92 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcccCccccCCceEEcCCcccchhHHHHHHHhhccCCCCC-CCceEEEeeCCceeEEEeecC
Q 009360 170 DKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDP-SETTGIIELGGASVQVTFVSD 240 (536)
Q Consensus 170 ~~il~~v~~~l~~~~F~f~~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~-~~t~G~lDlGGaStQItf~~~ 240 (536)
+.|-+.+.+.+ + +.|--|--|+.-+-.+ .+.... .....++|||||||--+....
T Consensus 98 ~~iA~~l~~~l---g-------v~V~igGvEAemAi~G------ALTTPGt~~PlaIlDmG~GSTDAsii~~ 153 (332)
T PF08841_consen 98 QMIADELEEEL---G-------VPVEIGGVEAEMAILG------ALTTPGTDKPLAILDMGGGSTDASIINR 153 (332)
T ss_dssp HHHHHHHHHHH---T-------SEEEEECEHHHHHHHH------HTTSTT--SSEEEEEE-SSEEEEEEE-T
T ss_pred HHHHHHHHHHH---C-------CceEEccccHHHHHhc------ccCCCCCCCCeEEEecCCCcccHHHhCC
Confidence 44556666654 3 4444466666655444 343322 345789999999999877654
No 88
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=26.88 E-value=6.6e+02 Score=27.09 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=74.2
Q ss_pred EEEEEEcCCcceEEEEEEEeCC-------CCcccc--ccceeec----CCCCcccCCCcchH-HHHHHHHHH--HHHHhC
Q 009360 80 YGVLLDGGSTGTRIHVFSYDTE-------TNHFDF--DLGSMRL----NPGLSSYAVNPTNA-GDSLKDLLD--FAKRKV 143 (536)
Q Consensus 80 y~iVIDaGSsgtRl~Vy~~~~~-------~~~~~~--~~~~~kv----~pGLss~~~~p~~a-~~~l~~ll~--~a~~~I 143 (536)
-.|-||.|.|.|.+..=+..-. -|.+++ ...+.+. .|=.+ .... .+.++.++. +++.-|
T Consensus 6 lSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i~FTPv~~-----q~~id~~alk~~v~eeY~~AGi 80 (473)
T COG4819 6 LSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPIFFTPVDK-----QGGIDEAALKKLVLEEYQAAGI 80 (473)
T ss_pred eeeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecceeeeeecc-----cCCccHHHHHHHHHHHHHHcCC
Confidence 3578999999998866555431 122221 0011110 11111 1111 234555543 445555
Q ss_pred CCCCCCCce-EEEEeechhcccChhhHHHHHHHHHHhhcccCcccc---CCceEEcCCcccchhHHHHHHHhhccCCCCC
Q 009360 144 PPAFWADTE-IRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFA---DDWATVITGSDEGVYAWIVANYALGTLGGDP 219 (536)
Q Consensus 144 P~~~~~~Tp-v~l~ATAGmRlL~~~~~~~il~~v~~~l~~~~F~f~---~~~~~VIsG~eEg~y~Wv~vNyllg~l~~~~ 219 (536)
.++.-..-. |.-+-||- .+|+..+++++...+. .|..- .+-=.||-|.--|.-.+ ..+.
T Consensus 81 ~pesi~sGAvIITGEtAr-----k~NA~~vl~alSg~aG--DFVVAtAGPdLESiIAGkGaGA~t~----------Seqr 143 (473)
T COG4819 81 APESIDSGAVIITGETAR-----KRNARPVLMALSGSAG--DFVVATAGPDLESIIAGKGAGAQTL----------SEQR 143 (473)
T ss_pred ChhccccccEEEeccccc-----cccchHHHHHhhhccc--ceEEEecCCCHHHHhccCCccccch----------hhhh
Confidence 444333323 33344443 2456667777665443 34321 11125677766654332 1112
Q ss_pred CCceEEEeeCCceeEEEeecCCCCCccceeeEEecCe
Q 009360 220 SETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (536)
Q Consensus 220 ~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~ 256 (536)
...+--+|+|||-|-+++....+. ....-+++||+
T Consensus 144 ~t~v~NlDIGGGTtN~slFD~Gkv--~dTaCLdiGGR 178 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFDAGKV--SDTACLDIGGR 178 (473)
T ss_pred ceEEEEEeccCCccceeeeccccc--ccceeeecCcE
Confidence 223567999999999998754432 12234455554
No 89
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=25.17 E-value=89 Score=25.70 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhccCCccee
Q 009360 498 ALSIMLMVIAWSISKWRKPQLKTI 521 (536)
Q Consensus 498 ~~~~~~~~~~~~~~~~r~~~~k~~ 521 (536)
++++++++++|..+|.++.+.||.
T Consensus 17 ~i~V~~~~~~wi~~Ra~~~~DKT~ 40 (72)
T PF13268_consen 17 SILVLLVSGIWILWRALRKKDKTA 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcH
Confidence 355666788888999999999885
No 90
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=23.89 E-value=1.1e+02 Score=28.66 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=15.0
Q ss_pred CCCCCCCceEEEEEEcCCc
Q 009360 71 PSFPPSSVKYGVLLDGGST 89 (536)
Q Consensus 71 ~~~~~~~~~y~iVIDaGSs 89 (536)
....|...+|.+|.|-|++
T Consensus 63 r~~IpGA~~~~~VyDnG~~ 81 (145)
T PF10726_consen 63 RVVIPGAVRYPIVYDNGAD 81 (145)
T ss_pred CccccCceEeeEEEECCCc
Confidence 4456677899999999875
No 91
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=23.86 E-value=94 Score=26.68 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 009360 489 DSPTLLSLIALSIMLMVIAWSISKWRKPQ 517 (536)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 517 (536)
.-.+++++++=-+++.++. +++|||+.+
T Consensus 73 TlFgLiPFL~Gc~~~~v~~-l~lrwr~rr 100 (100)
T PF10954_consen 73 TLFGLIPFLAGCLILGVIA-LILRWRHRR 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhcC
Confidence 3445666655444444444 489998753
No 92
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.72 E-value=1.3e+02 Score=30.92 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=47.8
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEeechhcccCh---hhHHHHHHHHHHhhcccC
Q 009360 118 LSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDV---VVQDKILDSCRRVLRVSG 184 (536)
Q Consensus 118 Lss~~~~p~~a~~~l~~ll~~a~~~IP~~~~~~Tpv~l~ATAGmRlL~~---~~~~~il~~v~~~l~~~~ 184 (536)
|+.|++.=+.|.-++.+=+.-.++.......+.-...-+|..|.|..|. ++++++++.+.+.+++.+
T Consensus 24 l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~~ 93 (268)
T TIGR01743 24 LNFFSERYESAKSSISEDIVIIKETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEPE 93 (268)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHCC
Confidence 5666666666666666655555555544556666788899999999984 668889999888887644
No 93
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=22.47 E-value=2e+02 Score=33.96 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=47.5
Q ss_pred HHHHHHHhhccCCC--CCCCceEEEeeCCceeEEEeecC----CCCCccceeeEEecCeeEEEEEeecccccHHHHHHHH
Q 009360 204 AWIVANYALGTLGG--DPSETTGIIELGGASVQVTFVSD----EPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETL 277 (536)
Q Consensus 204 ~Wv~vNyllg~l~~--~~~~t~G~lDlGGaStQItf~~~----~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~~~ 277 (536)
.=+|+||.+-+-.. .....+-+-|||.|||--|.+.= +...+....+++.-|.-|+ +++|..+...|+
T Consensus 196 ~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd------~tLGG~e~~~rL 269 (902)
T KOG0104|consen 196 TAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFD------RTLGGLEMTMRL 269 (902)
T ss_pred hHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccC------CccchHHHHHHH
Confidence 44789998764221 12245678999999997665431 1122234455665565555 678999998898
Q ss_pred HHHhcc
Q 009360 278 RELLSS 283 (536)
Q Consensus 278 l~~l~~ 283 (536)
..++.+
T Consensus 270 r~~l~~ 275 (902)
T KOG0104|consen 270 RDHLAN 275 (902)
T ss_pred HHHHHH
Confidence 887764
No 94
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=22.07 E-value=90 Score=34.98 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCceEEEEEEcCCcceEEEEEEEeCCC
Q 009360 76 SSVKYGVLLDGGSTGTRIHVFSYDTET 102 (536)
Q Consensus 76 ~~~~y~iVIDaGSsgtRl~Vy~~~~~~ 102 (536)
.+..|||.+|.|||+.|.++-....++
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sge 187 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSGE 187 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCCc
Confidence 578999999999999999999877643
No 95
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=21.85 E-value=2e+02 Score=28.81 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=34.4
Q ss_pred HHHHhhccCCCCCCCceEEEeeCCceeEEEeecCCCCCccceeeEEecCeeEEEEEeecccccHHHHHH
Q 009360 207 VANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFE 275 (536)
Q Consensus 207 ~vNyllg~l~~~~~~t~G~lDlGGaStQItf~~~~~~~~~~~~~~~l~g~~y~vYthSfLgyG~~~Ar~ 275 (536)
++.|+|+ -+..|++|+|||-|-|+...+...- ++..=--+|+..+|--.-+-|--..+|.+
T Consensus 132 Aaa~vL~------l~dg~VVDiGGGTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG~ygi~~EeAE~ 192 (277)
T COG4820 132 AAADVLQ------LDDGGVVDIGGGTTGISIVKKGKVI--YSADEPTGGTHMTLVLAGNYGISLEEAEQ 192 (277)
T ss_pred hHHHHhc------cCCCcEEEeCCCcceeEEEEcCcEE--EeccCCCCceeEEEEEecccCcCHhHHHH
Confidence 5566665 2456899999999999877554310 00000124444444444444555666654
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=20.77 E-value=59 Score=28.47 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=22.9
Q ss_pred hcccChhhHHHHHHHHHHhhcccCccccCC--ceEEcCCcccchh
Q 009360 161 LRLVDVVVQDKILDSCRRVLRVSGFRFADD--WATVITGSDEGVY 203 (536)
Q Consensus 161 mRlL~~~~~~~il~~v~~~l~~~~F~f~~~--~~~VIsG~eEg~y 203 (536)
+|.-.++.++.+++.+... ...+....+. .++||+|+||-.|
T Consensus 42 VRf~~~~~A~~a~~~~~~~-~~~~~~i~~~~~~~~vLeGeeE~~Y 85 (105)
T PF08777_consen 42 VRFKTPEAAQKALEKLKEA-NDGKLKIKGKEVTLEVLEGEEEEEY 85 (105)
T ss_dssp EEESS---HHHHHHHHHHT-TTS-B-TTSSSEEEE---HHHHHHH
T ss_pred EEECCcchHHHHHHHHHhc-cCCceEEcCceEEEEECCCHHHHHH
Confidence 4555556788888888876 2334444433 3699999999887
No 97
>PTZ00288 glucokinase 1; Provisional
Probab=20.46 E-value=4e+02 Score=29.07 Aligned_cols=63 Identities=13% Similarity=0.002 Sum_probs=39.1
Q ss_pred CceEEEEEEcCCcceEEEEEEEeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCC
Q 009360 77 SVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVP 144 (536)
Q Consensus 77 ~~~y~iVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~kv~pGLss~~~~p~~a~~~l~~ll~~a~~~IP 144 (536)
...|.+.+|.|-|++|+-+|+......... ....-+++--+.|-.+.-+.+..+++..++..|
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGV-----HIIYVRFNVTKTDIRELLEFFDEVLQKLKKNLS 86 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCce-----eEEEEecccccccHHHHHHHHHHHHHHHHhcCc
Confidence 456889999999999999998743110111 111111111134555667788888888887665
Done!