Query 009362
Match_columns 536
No_of_seqs 464 out of 1415
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 03:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.4E-48 4.8E-53 394.4 26.6 458 14-505 6-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.4E-38 1.2E-42 314.9 25.8 400 15-485 23-432 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.9E-36 6.4E-41 301.1 32.3 396 15-484 21-430 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.2E-33 1.1E-37 282.0 26.6 383 59-492 50-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 8.8E-34 3E-38 275.7 7.8 357 23-471 3-361 (375)
6 2cfq_A Lactose permease; trans 100.0 8.9E-30 3.1E-34 250.5 15.3 377 37-494 24-407 (417)
7 2xut_A Proton/peptide symporte 100.0 8.3E-29 2.9E-33 251.7 20.0 142 60-226 51-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 2.4E-14 8.1E-19 142.2 15.8 181 284-492 27-212 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.5 1.8E-13 6.1E-18 137.5 15.3 179 285-489 13-199 (491)
10 3o7q_A L-fucose-proton symport 99.5 7.3E-13 2.5E-17 130.9 17.9 179 285-484 26-227 (438)
11 2gfp_A EMRD, multidrug resista 99.4 5.6E-13 1.9E-17 128.8 11.3 176 290-492 5-180 (375)
12 2xut_A Proton/peptide symporte 99.4 3.6E-12 1.2E-16 129.1 15.7 174 285-484 12-196 (524)
13 2cfq_A Lactose permease; trans 99.3 3.1E-12 1.1E-16 125.3 8.1 147 61-232 257-405 (417)
14 4gc0_A D-xylose-proton symport 99.3 4.9E-11 1.7E-15 119.7 16.2 180 30-231 287-467 (491)
15 2g9p_A Antimicrobial peptide l 41.5 17 0.00057 17.6 1.7 14 352-365 2-15 (26)
16 3arc_T Photosystem II reaction 28.9 74 0.0025 17.2 3.3 13 221-233 17-29 (32)
17 3hd6_A Ammonium transporter RH 28.6 2.4E+02 0.0081 27.2 8.8 8 87-94 86-93 (490)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.4e-48 Score=394.40 Aligned_cols=458 Identities=18% Similarity=0.227 Sum_probs=340.2
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.+++.|.+.++.+++.++.++|...++..+|.+.+++..+.+...+.+..+.|++.+++.+|.++|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34566777777889999999999999999999999884433333345667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh------------------hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCccc
Q 009362 94 RVYGLALMLMVLSSLACGF------------------SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMT 155 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~ 155 (536)
++++++.+++.++++++++ ++++ ++++++|+++|++.|+..+..+.+++|++|+++
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~------~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~ 159 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYV------PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCH------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh
Confidence 9999999999999999984 5665 999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhh
Q 009362 156 RGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTA 235 (536)
Q Consensus 156 rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~ 235 (536)
|++..++.+.+..+|.++++.++..+....+. ......+||+.+.+..++.++.++..+++||||+|+.
T Consensus 160 rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~ 228 (491)
T 4gc0_A 160 RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA-----------SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLM 228 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-----------TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHH
T ss_pred hhhhHHhhhhhhhhhhhhhhhcchhhcccccc-----------ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHH
Confidence 99999999999999999999998877543221 0123467999999988888888888899999999984
Q ss_pred hhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh
Q 009362 236 LVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQY 315 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (536)
.+++.+++.+.+++..+.+..+.+..+..+......+...+.......+.........+......+....+.+.+.+.
T Consensus 229 -~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (491)
T 4gc0_A 229 -SRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT- 306 (491)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred -HcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-
Confidence 455566666655554433321111100000000000000011111122233344444444555566667777777666
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHH
Q 009362 316 IDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFG 395 (536)
Q Consensus 316 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (536)
.+.+.. ..........+..+++.++++++.||+|||+.+..+...+.++++.++..... ....+.
T Consensus 307 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 371 (491)
T 4gc0_A 307 LGASTD------------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIV 371 (491)
T ss_dssp SSCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---TCCHHH
T ss_pred cCCCcc------------chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---ccchHH
Confidence 554433 33345556667788888999999999999999999988888887776654431 112333
Q ss_pred HHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHH
Q 009362 396 FMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGV 475 (536)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~ 475 (536)
.+....++...+..+..++.+.+.+|++|++.|++++|+.+..+++++++++.+.+.+.+........+...+|++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44444455556666777888999999999999999999999999999999999988775432222344667789999999
Q ss_pred HHHHHHHhheeeccccccchhhcccccCch
Q 009362 476 CFMGFAITYFFTRETMGRSLEENEKEDDSD 505 (536)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (536)
++++.++.++++||||+|++||+++..+++
T Consensus 452 ~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp HHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred HHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 999999998899999999999998876644
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.4e-38 Score=314.88 Aligned_cols=400 Identities=13% Similarity=0.139 Sum_probs=303.2
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
++.+|..+..++++.+..+++...+++.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~ 93 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG---------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV 93 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST---------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH
Confidence 345677788888889999999999999999887664 46778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh----hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGF----SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFG 170 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 170 (536)
+++++.++.+++.+++++ ++++ +.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWATSSI------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 167 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHSSS------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccH------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence 999999999999999999 8887 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCcccccccCCCCc-hhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhH
Q 009362 171 ILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIA-WRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDM 248 (536)
Q Consensus 171 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~ 248 (536)
.++++.+++.+.+ ..+ ||+.|++.+++.++. ++..+++||+|+.... ++.++..+..
T Consensus 168 ~~~g~~~~~~l~~-------------------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 226 (451)
T 1pw4_A 168 GGIPPLLFLLGMA-------------------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL--PPIEEYKNDY 226 (451)
T ss_dssp HTSHHHHHHHHHH-------------------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC--CSCTTTCCC-
T ss_pred HHHHHHHHHHHHH-------------------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCC--CChhhhcccc
Confidence 9999999998753 345 999999988777664 4455678998864211 1100000000
Q ss_pred HHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhh
Q 009362 249 EKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAF 328 (536)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 328 (536)
+.+...+.+++....+...+... +.+.++...+..++.....+....+.|.++++..|+++.
T Consensus 227 ---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------- 288 (451)
T 1pw4_A 227 ---------PDDYNEKAEQELTAKQIFMQYVL--PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD------- 288 (451)
T ss_dssp ---------------------CCTHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH-------
T ss_pred ---------cccchhhhhcccccccchHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------
Confidence 00000000001111111111111 224566677777777788888999999999887787765
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh--chhHHHHHhHHHHH-HHHHHhhcccccccCCCchHHHHHHHHHHHH
Q 009362 329 EEAFKVARHQAIFAICSTIPGYFVTVFFIDRI--GRVAIQALGFFFMG-VIYLAIGVPYSYKWSKHTNFGFMFLYALTFF 405 (536)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (536)
..+.......++.+++.++.+++.||+ +||+.+..+..+.. ++++++..... ...+...+..+..+
T Consensus 289 -----~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 289 -----KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA------GNPTVDMICMIVIG 357 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT------TCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc------cCHHHHHHHHHHHH
Confidence 445677777888999999999999999 99998887777666 55555444321 12333333333444
Q ss_pred HHhcCccccccccccccccccccchhhhHhHHHHHH-HHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 406 FANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV-GAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
++..+..+....+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.+ ..|+...|++.+++++++.++.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD------FFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHHHHHHHH
Confidence 444444566678889999999999999999999999 99999999999955 45788899998888888877766
Q ss_pred e
Q 009362 485 F 485 (536)
Q Consensus 485 ~ 485 (536)
+
T Consensus 432 ~ 432 (451)
T 1pw4_A 432 V 432 (451)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.9e-36 Score=301.07 Aligned_cols=396 Identities=10% Similarity=-0.009 Sum_probs=292.1
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
+++++..+..+++..+..+++....++..|.+.+++ |++..+.|++.+++.++..++++++|+++||+|||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~ 92 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF--------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA 92 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH
Confidence 445667777778888889999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh---hhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLAC---GFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGI 171 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 171 (536)
+++++.++.+++.+++ ++++++ +.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 93 GIITGLFLYALGAALFWPAAEIMNY------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccH------HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999 888887 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HhhhcccccCCcccccccC------CCCchhHHHHHhhHHHHHHHHHHHc--CCCCcchhhhhhhcHH
Q 009362 172 LASSTVTMAVC-KIFEATTTRDNDVNKRQHQ------ADIAWRLILMLGSIPAAFTYYWRMT--MPESARYTALVEQNVM 242 (536)
Q Consensus 172 ~i~~~~~~~l~-~~~~~~~~~~~~~~~~~~~------~~~~w~~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~ 242 (536)
++++.+++.+. ...+.....+....+.... ...+||+.|++.++..++..+..++ .||+++.. +++++
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~ 243 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDAK 243 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCCSS
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccccc
Confidence 99999999985 2111000000000000000 0011999998866665554443333 45554320 00000
Q ss_pred HHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH-hhhhcCCCCC
Q 009362 243 QAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKI-YHQYIDGNGH 321 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~ 321 (536)
++...+..++ .. +.+.++...+..++.....+....+.|.| +++.+|+++.
T Consensus 244 -------------------------~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 295 (438)
T 3o7q_A 244 -------------------------QGSFSASLSR-LA--RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG 295 (438)
T ss_dssp -------------------------TTSHHHHHHH-HT--TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred -------------------------ccchhhhHHH-HH--hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh
Confidence 0000001111 11 12345556666666777778888999999 8886688766
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHH
Q 009362 322 DQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYA 401 (536)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (536)
..+.......++.+++.++.+++.||++||+.+..+.++..++.+++..... .......
T Consensus 296 ------------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~- 354 (438)
T 3o7q_A 296 ------------FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--------HVGLIAL- 354 (438)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHH-
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC--------cHHHHHH-
Confidence 4556677778888999999999999999999999998888887776665544 2222222
Q ss_pred HHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccc-cchhhHHHHHHHHHHH
Q 009362 402 LTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATG-VTIALLILGGVCFMGF 480 (536)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 480 (536)
+..+++.....+..+++..|.+|++ ++.+.++.. .+.+|+.++|.+.|++.+ ..| ++..|++.+++.++..
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD------AAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH------HHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHH
Confidence 3334444555688888889999977 888888877 778999999999999965 445 7788887666655554
Q ss_pred HHhh
Q 009362 481 AITY 484 (536)
Q Consensus 481 ~~~~ 484 (536)
++.+
T Consensus 427 ~~~~ 430 (438)
T 3o7q_A 427 IFAR 430 (438)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=3.2e-33 Score=282.00 Aligned_cols=383 Identities=11% Similarity=0.047 Sum_probs=257.3
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccc-cchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhcc
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDL-IGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 137 (536)
|.+..+.|++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++++++ +.++++|++.|++.+
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~ 123 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA------SALFGSIILIIIGTG 123 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST------THHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 899999999999999999999999987 999999999999999
Q ss_pred CcchhhhHhhhccCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhH
Q 009362 138 GDYPLSATIMSEFANKMT--RGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSI 215 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~--rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 215 (536)
...+...+++.|++|+++ |+.++++.+.+.++|..++|.+++.+. +..|||+.|++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-------------------~~~g~~~~f~~~~~ 184 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ-------------------EAAGYHVAFSLAAI 184 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHSCHHHHHHHHHH
T ss_pred hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH-------------------hhhhHHHHHHHHHH
Confidence 999999999999999988 777888899999999999999999985 34579999999777
Q ss_pred HHHHHHHHHHcC-CCCcch---hhhhhhcHHHHHHhHHH---------------Hhcccccccccc--------------
Q 009362 216 PAAFTYYWRMTM-PESARY---TALVEQNVMQAAKDMEK---------------VLDVSISQIAEE-------------- 262 (536)
Q Consensus 216 ~~~~~~~~~~~~-~esp~~---l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~-------------- 262 (536)
..++..+..++. ++..+. ...++.+.++..+..+. ..... .+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 263 (491)
T 4aps_A 185 GMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW-NSLPAYINLLTIVAIAIPVF 263 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS-CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccC-cccccchhhhhHHHHHHHHH
Confidence 666554433322 221100 00111112222221111 00000 000000
Q ss_pred ---CCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHH
Q 009362 263 ---YPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQA 339 (536)
Q Consensus 263 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 339 (536)
...++++ .....++.....+......+.....+.....+.+.+..+..+.+..+.+ ...
T Consensus 264 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 325 (491)
T 4aps_A 264 YFAWMISSVK------VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS------------WFQ 325 (491)
T ss_dssp HHHHHC------------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG------------GGT
T ss_pred HHHHHhhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH------------HHh
Confidence 0000000 0000111112233444444555566667777888888886777654333 334
Q ss_pred HHHHHhhhhhHHHHHHHHHhhchhHHHH-----HhHHHHHHHHHHhhccccccc-CCCchHHHHHHHHHHHHHHhcCccc
Q 009362 340 IFAICSTIPGYFVTVFFIDRIGRVAIQA-----LGFFFMGVIYLAIGVPYSYKW-SKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 340 ~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
....++.+++.++.+++.||++||+... .+..+.+++++++........ ......+...+..++.+++.....+
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 405 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP 405 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 4455666677788999999999986544 666666666665554321000 0111233344444455555555567
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
..+.++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+ .++...|.+++++++++.++.+++.++.++
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999988753 256678888888888887777755555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=8.8e-34 Score=275.69 Aligned_cols=357 Identities=13% Similarity=0.067 Sum_probs=264.2
Q ss_pred HHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHH
Q 009362 23 IIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALML 102 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (536)
..+++..+..+++...+.+..|.+.+++ |.+..+.|++.+++.++..+++++.|+++||+|||+++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL--------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS--------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 4456677778888888999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 103 MVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
.+++.++.++++++ +.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.
T Consensus 75 ~~~~~~~~~~~~~~------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 75 FMLATLVAVTTSSL------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhccH------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999987 999999999999999999999999999999999999999999999999999999999883
Q ss_pred HhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccc
Q 009362 183 KIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAE 261 (536)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (536)
+..+||+.|++.++..++..+ ..+++||+++.. +++
T Consensus 149 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------------- 185 (375)
T 2gfp_A 149 -------------------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---APR--------------------- 185 (375)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CCC---------------------
T ss_pred -------------------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---ccc---------------------
Confidence 445799999988777766554 445678876531 110
Q ss_pred cCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHH
Q 009362 262 EYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIF 341 (536)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 341 (536)
.+.++...+.++ .+.++...+..++.....+....+.|.++++..|.++. ..+.....
T Consensus 186 ---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~g~~~~~ 243 (375)
T 2gfp_A 186 ---TRLLTSYKTLFG-------NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSM------------TVSILFIL 243 (375)
T ss_dssp ---CCTTTCSTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHH------------HHHHHHHT
T ss_pred ---ccHHHHHHHHhc-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------------HHHHHHHH
Confidence 000111111111 13345555556666677777888888888775555443 44566677
Q ss_pred HHHhhhhhHHHHHHHHHhhchhHHHHHhHHH-HHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccc
Q 009362 342 AICSTIPGYFVTVFFIDRIGRVAIQALGFFF-MGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPA 420 (536)
Q Consensus 342 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (536)
..++.+++.++.+++.||.+++ +..+... ...+...+..... .....+...+..+..+++.....+...++..
T Consensus 244 ~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 317 (375)
T 2gfp_A 244 PIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAGMLFPLATSGAM 317 (375)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7788888888999999998873 2222222 1111111111110 0012233333333333444445678888899
Q ss_pred ccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHH
Q 009362 421 ELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLI 471 (536)
Q Consensus 421 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~ 471 (536)
|..| +.|+++.|+.+...++|..++|.+.+.+.+ ..++...+.+
T Consensus 318 ~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~~~~~~~~~ 361 (375)
T 2gfp_A 318 EPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ------TGQGSLGLLM 361 (375)
T ss_dssp THHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH------HHHHHHHHHH
T ss_pred HhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc------CCcccHHHHH
Confidence 9998 889999999999999999999999998854 3355555544
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=8.9e-30 Score=250.52 Aligned_cols=377 Identities=16% Similarity=0.075 Sum_probs=235.1
Q ss_pred cchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHH---Hhhh
Q 009362 37 FCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSL---ACGF 112 (536)
Q Consensus 37 ~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~---~~~~ 112 (536)
....+.+|. +.+++ |++..+.|++.+++.++..++++++|+++||+|||++++++..+++++.. ...+
T Consensus 24 ~~~~~~~~~~l~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2cfq_A 24 GAYFPFFPIWLHDIN--------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHTTTHHHHHHTTT--------CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 343455555 55667 99999999999999999999999999999999999999998887755321 1122
Q ss_pred hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009362 113 SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK--MTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTT 190 (536)
Q Consensus 113 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~ 190 (536)
++.. ...+...+++.|++.|...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+
T Consensus 96 ~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------- 163 (417)
T 2cfq_A 96 GPLL-----QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT------- 163 (417)
T ss_dssp HHHH-----HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-------
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 2211 01234456666666555444444455555443 456777788877888999999999998853
Q ss_pred cCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCC
Q 009362 191 RDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPP 270 (536)
Q Consensus 191 ~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (536)
.+||+.|++.++..++..+..++.+|+++. . .+++ + .+ +.++++.
T Consensus 164 -------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~---------------~~---~~~~~~~ 208 (417)
T 2cfq_A 164 -------------INNQFVFWLGSGCALILAVLLFFAKTDAPS--S-ATVA-N---------------AV---GANHSAF 208 (417)
T ss_dssp -------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC--S-SCSS-S---------------SS---SSCCCCC
T ss_pred -------------hchhHHHHHHHHHHHHHHHHHHHcCccccc--c-cccc-c---------------cc---ccccccc
Confidence 269999998777655554444444443321 0 0000 0 00 0000111
Q ss_pred ChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 009362 271 QYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGY 350 (536)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (536)
..+...+.. + .+.++...+..+.....++....+.|.++.+.++... ......+....+..++.+++.
T Consensus 209 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~~~ 276 (417)
T 2cfq_A 209 SLKLALELF-R--QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE---------QGTRVFGYVTTMGELLNASIM 276 (417)
T ss_dssp CHHHHHHHT-T--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH---------HHTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHh-c--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CChhHHHHHHHHHHHHHHHHH
Confidence 111111111 1 1223333333333333444445567777765332110 011123345556667778889
Q ss_pred HHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccch
Q 009362 351 FVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRST 430 (536)
Q Consensus 351 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 430 (536)
++.++++||+|||+.+..+..+.++.++.+..... .+.+.+...+.++......+..+.+.+|.+|++.|++
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~ 348 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS--------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS--------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 99999999999999998888887777666544322 2222222222222222223445678899999999999
Q ss_pred hhhHh-HHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccc
Q 009362 431 CHGIS-GAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRS 494 (536)
Q Consensus 431 ~~g~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (536)
+.++. +..+++|++++|.+.|++.+ ..|+...|.+.+++++++.++.++..||+++.+
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYE------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHH------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHH------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 99994 88888999999999999854 446778888888888888877765666554433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=8.3e-29 Score=251.74 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=128.2
Q ss_pred CChhhhHHHHHHHHHHHHHhhhhhccccccc-chhHHHHHHHHHHHHHHHHhhhhh-cccccchhhHHHHHHHHHhhhcc
Q 009362 60 IPNAVVSPMLALALLGTVIGQLVFGRLGDLI-GRRRVYGLALMLMVLSSLACGFSI-CTTKQCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 60 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g 137 (536)
++..+.|++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ ++ +.++++|++.|++.+
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV------QGFYTGLFLIALGSG 124 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH------HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999 999999999999999999999998 86 899999999999999
Q ss_pred CcchhhhHhhhccCCcccchhHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhh
Q 009362 138 GDYPLSATIMSEFANKMTRGAFIAA---VFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGS 214 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~rg~~~~~---~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~ 214 (536)
...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+. +..+||+.|++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-------------------~~~g~~~~f~~~~ 185 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL-------------------KNFGAAVAFGIPG 185 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH-------------------HTSCHHHHHHHHH
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------ccccHHHHHHHHH
Confidence 9999999999999999999877666 88999999999999998884 3457999999987
Q ss_pred HHHHHHHHHHHc
Q 009362 215 IPAAFTYYWRMT 226 (536)
Q Consensus 215 ~~~~~~~~~~~~ 226 (536)
+..++..+..++
T Consensus 186 ~~~~~~~~~~~~ 197 (524)
T 2xut_A 186 VLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH
Confidence 776665554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=2.4e-14 Score=142.20 Aligned_cols=181 Identities=13% Similarity=0.003 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchh
Q 009362 284 GRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRV 363 (536)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 363 (536)
++.++...+..+......+......|.+.++ + .+..+ .+.......++..++.++.|+++||+|||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r 92 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGD------------LGFALSGISIAYGFSKFIMGSVSDRSNPR 92 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSC------------HHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhH------------HHHHHHHHHHHHHHHHHhHHHHHHhcCch
Confidence 3456666666666667777777888888777 5 77664 33667777888899999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhhc----ccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHH
Q 009362 364 AIQALGFFFMGVIYLAIGV----PYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFG 439 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 439 (536)
+++..+.++.+++.+++.+ ... .+.+.+..++.+++.....+...+++.|.+|+++|++++|+.+...
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 164 (451)
T 1pw4_A 93 VFLPAGLILAAAVMLFMGFVPWATSS--------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHSS--------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc--------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH
Confidence 9999999999998888876 433 2333344444455555556788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccc-cchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 440 KVGAIIGTVAFLWASHDDNKVNATG-VTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 440 ~~g~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.+|.+++|.+.+.+.+ ..+ |+.+|++.++++++..++.+++.||+++
T Consensus 165 ~~g~~~g~~~~~~l~~------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 165 NVGGGIPPLLFLLGMA------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHTSHHHHHHHHHH------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHH------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999999998753 456 9999999998888877776656776544
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.50 E-value=1.8e-13 Score=137.49 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=140.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh-----cCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQY-----IDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR 359 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 359 (536)
+.++......++....+++...+.+.|+.+. +|.+.. ..+.......++..++.+++|+++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------------~~~~~~~~~~~~~~~~~~~~g~l~dr 80 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRA------------TAASIMAIYASMVYLSGTIGGFVADR 80 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777888888889999999886 777766 45567778888899999999999999
Q ss_pred -hchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccc--cchhhhHhH
Q 009362 360 -IGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARF--RSTCHGISG 436 (536)
Q Consensus 360 -~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~ 436 (536)
+|||+++..+.++.+++.+++..... .+.+.+..++.+++.....+...+++.|.+|++. |+.+.++.+
T Consensus 81 ~~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (491)
T 4aps_A 81 IIGARPAVFWGGVLIMLGHIVLALPFG--------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV 152 (491)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHSCCS--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence 89999999999999998888776544 2333334444444444456788889999999988 777888899
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 437 AFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 437 ~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
...++|..++|.+.+.+.+ ..||+.+|++.++..+++.++.++..++
T Consensus 153 ~~~~~g~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQE------AAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999854 5689999999887777776665534333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=7.3e-13 Score=130.90 Aligned_cols=179 Identities=9% Similarity=-0.007 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
+.++.+....+.............|.+.++ +|.+.. ..+.......++..++.++.|+++||+|||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~------------~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~ 92 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNF------------QAGLIQSAFYFGYFIIPIPAGILMKKLSYKA 92 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSH------------HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHH------------HHHHHHHHHHHHHHHHHHhHHHHHHHhcchH
Confidence 344555555666666666777778876666 888877 4557778888889999999999999999999
Q ss_pred HHHHhHHHHHHHHHHh---hcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHH
Q 009362 365 IQALGFFFMGVIYLAI---GVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV 441 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 441 (536)
.+..+.++.+++.++. ..... .+.+.+..++.+++.....+...+++.|.+|+++|+.++++.+....+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 93 GIITGLFLYALGAALFWPAAEIMN--------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccc--------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 9999999999988877 44333 444555555555555556678889999999999999999999999999
Q ss_pred HHHHHHHHHHhhh-cccccc-------------------cccccchhhHHHHHHHHHHHHHhh
Q 009362 442 GAIIGTVAFLWAS-HDDNKV-------------------NATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 442 g~~~~~~~~~~l~-~~~~~~-------------------~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
|..++|.+.+.+. +..+.. ...+|+..|++.+++.++..++.+
T Consensus 165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 322100 000178888777776666555544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.42 E-value=5.6e-13 Score=128.80 Aligned_cols=176 Identities=9% Similarity=-0.070 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHh
Q 009362 290 CATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALG 369 (536)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 369 (536)
+....+.............|.+.++ +|.++. ..+.......++..++.++.|+++||+|||+.+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~------------~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 71 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARD-LNVREG------------AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVG 71 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTH------------HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3444444555555566667776665 888776 444677777888889999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHH
Q 009362 370 FFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVA 449 (536)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 449 (536)
..+..++.++...... .+.+.+..+..+.+.....+...++..|.+|+++|++++++.+....+|..++|.+
T Consensus 72 ~~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (375)
T 2gfp_A 72 MSIFMLATLVAVTTSS--------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143 (375)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9998888887776544 34444445555555555567888899999999999999999999999999999999
Q ss_pred HHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 450 FLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 450 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.+++. +..+|+..|++.+++.++..+..++..||+++
T Consensus 144 ~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 144 GGLLD------TMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHSS------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHH------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 99984 35588999998888888877766656776544
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.39 E-value=3.6e-12 Score=129.08 Aligned_cols=174 Identities=11% Similarity=0.014 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcC------CCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYID------GNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFID 358 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 358 (536)
+.++.+.+..++....+++...+.+.++.+.+| +++.+ .+.......++.+++.+++|+++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~d 79 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------------AKDVFHSFVIGVYFFPLLGGWIAD 79 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------------HHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777778888888899999887788 77774 346677777888899999999999
Q ss_pred hh-chhHHHHHhHHHHHHHHHHhhccc-ccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhH--
Q 009362 359 RI-GRVAIQALGFFFMGVIYLAIGVPY-SYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGI-- 434 (536)
Q Consensus 359 ~~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-- 434 (536)
|+ |||+++..+.++.+++.+++.+.. . .+.+.+..++.+++.....+...+++.|.+|++.|+++.+.
T Consensus 80 r~~g~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 151 (524)
T 2xut_A 80 RFFGKYNTILWLSLIYCVGHAFLAIFEHS--------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFD 151 (524)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHHHHTSSC--------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHH
Confidence 99 999999999998888888777655 3 34444445555566666668888999999999999876666
Q ss_pred -hHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 435 -SGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 435 -~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.+...++|..++|.+.+.+.+ ..+|+.+|++.+++.+++.++.+
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLK------NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHH------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999998853 45889999988888777766655
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.30 E-value=3.1e-12 Score=125.29 Aligned_cols=147 Identities=9% Similarity=-0.007 Sum_probs=119.1
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcc
Q 009362 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDY 140 (536)
Q Consensus 61 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 140 (536)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++. +.+++..++.+++.+...
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~ 330 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSA------LEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSH------HHHHHHTTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHH
Confidence 35567888888889999999999999999999999999998888887777776664 677778888888877667
Q ss_pred hhhhHhhhccCCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHH
Q 009362 141 PLSATIMSEFANKMTRGAFIAA-VFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAF 219 (536)
Q Consensus 141 ~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 219 (536)
+....++.|.+|++.|+++.++ .+.+..+|..++|.+++.+.+ ..|++..|.+.+++.++
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~-------------------~~g~~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------------------SIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH-------------------HSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH-------------------hcCcHHHHHHHHHHHHH
Confidence 7778999999999999999998 478888999999999998853 34688888887777776
Q ss_pred HHHH-HHcCCCCcc
Q 009362 220 TYYW-RMTMPESAR 232 (536)
Q Consensus 220 ~~~~-~~~~~esp~ 232 (536)
..+. ..+.||.++
T Consensus 392 ~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 392 FTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTSSCCSCT
T ss_pred HHHHHHhhhcCCCc
Confidence 6544 344565443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.28 E-value=4.9e-11 Score=119.66 Aligned_cols=180 Identities=11% Similarity=0.046 Sum_probs=125.3
Q ss_pred HhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHH
Q 009362 30 FTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLA 109 (536)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 109 (536)
+........+....+.+.+.. +.+............+...++.++.+++.||+|||+.++.+.....++.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTL--------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhc--------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence 333333344455567777777 788888888888888999999999999999999999999999888887776
Q ss_pred hhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009362 110 CGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATT 189 (536)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~ 189 (536)
.+.............+.+.-+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+...+.+....
T Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-- 435 (491)
T 4gc0_A 359 LGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-- 435 (491)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH--
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 6554332122222222233333333333 4577789999999999999999999999999999888877665332111
Q ss_pred ccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCc
Q 009362 190 TRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESA 231 (536)
Q Consensus 190 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp 231 (536)
....++.+.|++.++++++. ++.++++||+.
T Consensus 436 -----------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 436 -----------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred -----------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 12234566777766666665 45567899985
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=41.53 E-value=17 Score=17.63 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=11.1
Q ss_pred HHHHHHHhhchhHH
Q 009362 352 VTVFFIDRIGRVAI 365 (536)
Q Consensus 352 ~~g~l~d~~grr~~ 365 (536)
+.|.++.++||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788999999864
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=28.89 E-value=74 Score=17.22 Aligned_cols=13 Identities=15% Similarity=0.577 Sum_probs=8.6
Q ss_pred HHHHHcCCCCcch
Q 009362 221 YYWRMTMPESARY 233 (536)
Q Consensus 221 ~~~~~~~~esp~~ 233 (536)
+....+++|+|+.
T Consensus 17 iFFAI~FRePPri 29 (32)
T 3arc_T 17 FFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHTSCCCCC
T ss_pred HHHhhhhcCCCCC
Confidence 3444568999874
No 17
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=28.56 E-value=2.4e+02 Score=27.20 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=4.2
Q ss_pred ccccchhH
Q 009362 87 GDLIGRRR 94 (536)
Q Consensus 87 ~dr~Grr~ 94 (536)
..|||--.
T Consensus 86 lkryg~ss 93 (490)
T 3hd6_A 86 LQRYGFSA 93 (490)
T ss_dssp STTCHHHH
T ss_pred HHHhccHH
Confidence 45666543
Done!