BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009363
         (536 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VOJ|A Chain A, Cccel6a Catalytic Domain Mutant D164a
          Length = 373

 Score = 28.9 bits (63), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 264 VSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRG 323
           V +V  I       ++  ++VAK R    +Y      KEG++ A+  L+ALG+ ++   G
Sbjct: 130 VRIVAVIEPDSLANMVTNMNVAKCRGAEAAY------KEGVIYALRQLSALGVYSYVDAG 183

Query: 324 H 324
           H
Sbjct: 184 H 184


>pdb|3VOG|A Chain A, Catalytic Domain Of The Cellobiohydrolase, Cccel6a, From
           Coprinopsis Cinerea
 pdb|3VOH|A Chain A, Cccel6a Catalytic Domain Complexed With Cellobiose
 pdb|3VOI|A Chain A, Cccel6a Catalytic Domain Complexed With P-Nitrophenyl
           Beta-D- Cellotrioside
          Length = 373

 Score = 28.9 bits (63), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 264 VSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRG 323
           V +V  I       ++  ++VAK R    +Y      KEG++ A+  L+ALG+ ++   G
Sbjct: 130 VRIVAVIEPDSLANMVTNMNVAKCRGAEAAY------KEGVIYALRQLSALGVYSYVDAG 183

Query: 324 H 324
           H
Sbjct: 184 H 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,721,593
Number of Sequences: 62578
Number of extensions: 563157
Number of successful extensions: 1407
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 3
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)