Query 009363
Match_columns 536
No_of_seqs 240 out of 1334
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 12:12:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 4.2E-59 9.1E-64 485.3 30.8 409 96-526 22-437 (437)
2 PTZ00206 amino acid transporte 100.0 1.3E-56 2.9E-61 478.7 33.0 399 110-524 58-465 (467)
3 KOG1304 Amino acid transporter 100.0 8.7E-54 1.9E-58 438.0 32.5 387 111-523 46-449 (449)
4 PF01490 Aa_trans: Transmembra 100.0 2.7E-53 5.9E-58 448.4 -0.9 392 110-520 1-408 (409)
5 PLN03074 auxin influx permease 100.0 1.2E-48 2.6E-53 415.8 32.9 391 111-534 45-462 (473)
6 KOG1305 Amino acid transporter 100.0 4.5E-45 9.8E-50 378.4 24.4 400 110-527 4-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1E-39 2.2E-44 315.2 2.2 389 108-526 113-517 (524)
8 COG0814 SdaC Amino acid permea 100.0 8.1E-31 1.7E-35 275.4 33.2 394 109-519 6-411 (415)
9 PRK10483 tryptophan permease; 99.9 3E-24 6.6E-29 222.4 30.7 354 107-491 6-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 3.4E-23 7.5E-28 216.3 32.7 372 111-512 2-391 (394)
11 PRK09664 tryptophan permease T 99.9 4.2E-23 9E-28 213.8 30.8 375 111-513 8-401 (415)
12 PRK15132 tyrosine transporter 99.9 4.7E-23 1E-27 214.5 30.8 372 112-514 3-390 (403)
13 TIGR00837 araaP aromatic amino 99.9 3.9E-22 8.5E-27 209.0 26.5 347 117-491 2-359 (381)
14 PRK13629 threonine/serine tran 99.9 7.7E-19 1.7E-23 182.2 32.0 387 118-514 25-437 (443)
15 TIGR00814 stp serine transport 99.8 6.2E-18 1.3E-22 176.5 24.1 376 117-509 8-396 (397)
16 PRK10655 potE putrescine trans 99.4 1.7E-09 3.6E-14 115.7 35.6 241 108-369 4-245 (438)
17 TIGR00905 2A0302 transporter, 99.4 8.4E-10 1.8E-14 119.1 30.9 247 108-370 5-255 (473)
18 TIGR00912 2A0309 spore germina 99.3 4.1E-10 8.9E-15 117.2 25.6 338 111-490 2-353 (359)
19 TIGR03810 arg_ornith_anti argi 99.3 4.3E-09 9.2E-14 113.5 33.4 246 110-373 1-254 (468)
20 PRK11021 putative transporter; 99.3 1.5E-08 3.2E-13 107.5 36.0 228 113-367 2-231 (410)
21 TIGR00909 2A0306 amino acid tr 99.3 1.2E-09 2.6E-14 116.4 27.3 243 109-369 2-251 (429)
22 PRK10435 cadB lysine/cadaverin 99.3 1.5E-08 3.2E-13 108.3 35.1 242 107-371 2-245 (435)
23 PRK10644 arginine:agmatin anti 99.3 1.3E-08 2.9E-13 109.0 34.1 236 108-368 6-246 (445)
24 PRK11049 D-alanine/D-serine/gl 99.2 5.9E-08 1.3E-12 104.7 33.0 241 107-368 17-266 (469)
25 TIGR01773 GABAperm gamma-amino 99.2 4.7E-08 1E-12 105.0 31.4 241 106-369 8-257 (452)
26 PRK11357 frlA putative fructos 99.2 9.4E-08 2E-12 102.4 33.4 239 107-368 5-250 (445)
27 TIGR00906 2A0303 cationic amin 99.2 1E-07 2.3E-12 104.6 34.2 363 107-491 25-411 (557)
28 PRK10249 phenylalanine transpo 99.1 1.3E-07 2.9E-12 101.6 33.8 239 107-368 18-264 (458)
29 PF13520 AA_permease_2: Amino 99.1 1.8E-08 3.8E-13 107.3 26.3 286 113-426 2-301 (426)
30 TIGR00930 2a30 K-Cl cotranspor 99.1 1.9E-07 4.1E-12 107.7 36.3 249 107-367 73-334 (953)
31 PRK15049 L-asparagine permease 99.1 1.3E-07 2.9E-12 102.6 32.6 240 109-368 27-275 (499)
32 KOG1287 Amino acid transporter 99.1 1.1E-08 2.5E-13 107.0 22.4 358 106-493 8-388 (479)
33 TIGR00911 2A0308 L-type amino 99.1 8.7E-08 1.9E-12 104.3 29.8 245 107-369 39-291 (501)
34 PRK11387 S-methylmethionine tr 99.1 1.7E-07 3.7E-12 101.2 31.2 238 108-368 12-261 (471)
35 PRK10746 putative transport pr 99.1 3.8E-07 8.3E-12 98.1 33.6 359 108-492 8-389 (461)
36 TIGR00908 2A0305 ethanolamine 99.1 4E-07 8.6E-12 97.5 32.8 237 108-366 5-244 (442)
37 PRK10580 proY putative proline 99.1 3.2E-07 7E-12 98.6 32.0 237 107-367 6-253 (457)
38 PRK10238 aromatic amino acid t 99.0 5E-07 1.1E-11 97.1 32.0 235 107-364 9-251 (456)
39 TIGR00913 2A0310 amino acid pe 99.0 6.1E-07 1.3E-11 97.1 32.6 238 110-367 2-251 (478)
40 PRK10836 lysine transporter; P 99.0 2.8E-06 6.1E-11 92.2 34.3 239 108-368 13-260 (489)
41 PRK10197 gamma-aminobutyrate t 98.9 1.3E-06 2.8E-11 93.7 29.4 223 122-367 4-235 (446)
42 PF03845 Spore_permease: Spore 98.9 9E-07 2E-11 90.6 25.0 287 112-431 2-295 (320)
43 COG0531 PotE Amino acid transp 98.8 8.8E-06 1.9E-10 87.4 32.2 250 107-374 9-262 (466)
44 COG1113 AnsP Gamma-aminobutyra 98.7 7.2E-06 1.6E-10 85.0 24.3 352 108-490 11-388 (462)
45 KOG3832 Predicted amino acid t 98.7 1.9E-07 4E-12 85.8 10.6 213 114-334 14-299 (319)
46 PRK15238 inner membrane transp 98.6 0.00011 2.4E-09 80.0 33.6 239 109-367 6-265 (496)
47 TIGR00907 2A0304 amino acid pe 98.5 0.0004 8.7E-09 75.3 32.3 245 109-366 11-270 (482)
48 COG3949 Uncharacterized membra 98.4 0.00014 3.1E-09 72.3 23.7 134 115-267 6-144 (349)
49 TIGR03813 put_Glu_GABA_T putat 98.4 0.0011 2.3E-08 71.8 32.4 53 316-373 202-254 (474)
50 COG0833 LysP Amino acid transp 98.3 0.0014 3E-08 69.8 31.0 356 107-490 41-427 (541)
51 TIGR03428 ureacarb_perm permea 98.3 0.0066 1.4E-07 65.7 36.7 253 108-373 11-273 (475)
52 TIGR02119 panF sodium/pantothe 98.3 0.0039 8.4E-08 67.4 34.8 150 109-273 39-192 (471)
53 TIGR00910 2A0307_GadC glutamat 98.3 0.0013 2.8E-08 71.8 30.1 52 310-366 196-247 (507)
54 TIGR00800 ncs1 NCS1 nucleoside 98.2 0.0025 5.5E-08 68.3 29.9 244 114-377 23-275 (442)
55 PRK09442 panF sodium/panthothe 98.2 0.0097 2.1E-07 64.5 34.2 150 109-273 40-193 (483)
56 TIGR02358 thia_cytX probable h 98.1 0.0089 1.9E-07 62.9 30.6 319 114-486 7-328 (386)
57 PRK11375 allantoin permease; P 98.0 0.016 3.5E-07 62.7 32.2 340 115-485 37-396 (484)
58 PF00324 AA_permease: Amino ac 98.0 4.8E-05 1E-09 82.4 11.9 235 122-374 7-261 (478)
59 KOG1286 Amino acid transporter 98.0 0.00074 1.6E-08 73.6 20.9 369 109-490 29-422 (554)
60 TIGR00813 sss transporter, SSS 97.8 0.024 5.2E-07 60.0 28.3 149 109-273 2-151 (407)
61 PRK12488 acetate permease; Pro 97.8 0.079 1.7E-06 58.4 32.8 148 109-273 66-215 (549)
62 COG0591 PutP Na+/proline sympo 97.7 0.12 2.6E-06 56.2 31.9 146 110-270 38-187 (493)
63 PF00474 SSF: Sodium:solute sy 97.6 0.0049 1.1E-07 65.3 18.7 148 109-272 5-154 (406)
64 TIGR02711 symport_actP cation/ 97.5 0.22 4.7E-06 55.0 32.9 147 109-272 66-214 (549)
65 TIGR03648 Na_symport_lg probab 97.5 0.23 4.9E-06 54.9 32.2 146 109-270 31-177 (552)
66 COG1457 CodB Purine-cytosine p 97.5 0.13 2.8E-06 54.4 27.8 259 180-480 84-350 (442)
67 PRK11017 codB cytosine permeas 97.3 0.32 7E-06 51.4 29.0 203 140-374 39-244 (404)
68 KOG1289 Amino acid transporter 97.3 0.11 2.4E-06 55.6 24.0 246 114-374 55-313 (550)
69 COG1914 MntH Mn2+ and Fe2+ tra 97.3 0.36 7.7E-06 51.0 28.4 54 438-491 324-378 (416)
70 PRK10484 putative transporter; 97.2 0.47 1E-05 52.0 33.0 155 109-273 37-196 (523)
71 COG1953 FUI1 Cytosine/uracil/t 97.1 0.59 1.3E-05 49.8 30.8 199 175-385 101-317 (497)
72 PF05525 Branch_AA_trans: Bran 97.0 0.45 9.8E-06 50.3 25.0 335 113-488 4-353 (427)
73 PRK09395 actP acetate permease 96.9 0.95 2.1E-05 50.0 33.5 146 109-271 68-215 (551)
74 PRK15419 proline:sodium sympor 96.9 0.97 2.1E-05 49.3 32.3 152 109-273 39-195 (502)
75 COG0733 Na+-dependent transpor 96.8 0.88 1.9E-05 47.9 27.4 213 112-334 9-241 (439)
76 TIGR02121 Na_Pro_sym sodium/pr 96.8 1.1 2.3E-05 48.8 31.5 150 109-272 35-190 (487)
77 PF02133 Transp_cyt_pur: Perme 96.7 0.014 3E-07 62.5 11.7 113 108-226 5-119 (440)
78 PF02554 CstA: Carbon starvati 96.5 0.063 1.4E-06 55.0 14.2 105 111-220 51-156 (376)
79 TIGR00796 livcs branched-chain 96.5 1.4 3E-05 46.1 30.1 71 120-199 3-76 (378)
80 PF01566 Nramp: Natural resist 96.4 1.5 3.2E-05 45.6 25.2 82 177-270 42-125 (358)
81 PRK15433 branched-chain amino 96.0 2.7 5.9E-05 44.6 26.1 332 113-488 9-356 (439)
82 TIGR00835 agcS amino acid carr 95.6 3.8 8.3E-05 43.4 27.6 84 110-198 45-138 (425)
83 PF00209 SNF: Sodium:neurotran 95.1 5.7 0.00012 43.5 23.4 102 113-225 6-112 (523)
84 COG4147 DhlC Predicted symport 95.1 5.7 0.00012 42.2 23.7 179 175-371 102-294 (529)
85 PRK00701 manganese transport p 94.8 6.9 0.00015 41.9 32.2 20 177-196 94-113 (439)
86 PRK15015 carbon starvation pro 94.3 0.64 1.4E-05 51.0 12.8 84 115-202 86-170 (701)
87 KOG2082 K+/Cl- cotransporter K 92.6 12 0.00026 41.9 18.9 163 112-278 115-289 (1075)
88 COG1966 CstA Carbon starvation 91.6 2.3 4.9E-05 45.9 12.0 84 112-199 52-136 (575)
89 PF01235 Na_Ala_symp: Sodium:a 91.3 22 0.00048 37.6 22.5 49 110-159 17-66 (416)
90 KOG1288 Amino acid transporter 89.2 11 0.00024 41.8 14.7 55 309-368 295-349 (945)
91 COG4145 PanF Na+/panthothenate 87.9 36 0.00079 35.2 26.8 139 110-265 39-183 (473)
92 KOG2083 Na+/K+ symporter [Inor 87.7 1.5 3.2E-05 47.6 7.0 103 116-226 39-143 (643)
93 TIGR00796 livcs branched-chain 86.2 6.2 0.00013 41.3 10.7 79 175-265 253-331 (378)
94 KOG2466 Uridine permease/thiam 86.1 53 0.0012 35.3 19.3 282 84-386 28-332 (572)
95 COG1114 BrnQ Branched-chain am 84.2 59 0.0013 34.2 27.6 124 348-488 228-355 (431)
96 TIGR01197 nramp NRAMP (natural 81.7 74 0.0016 33.5 28.3 66 121-195 13-81 (390)
97 KOG3660 Sodium-neurotransmitte 80.3 1.1E+02 0.0023 34.5 21.8 103 113-226 39-146 (629)
98 COG1115 AlsT Na+/alanine sympo 78.3 99 0.0021 33.0 25.2 335 109-473 60-421 (452)
99 PF05525 Branch_AA_trans: Bran 77.4 18 0.00039 38.4 10.3 67 176-253 260-326 (427)
100 PF02028 BCCT: BCCT family tra 72.8 1.5E+02 0.0032 32.3 24.3 89 179-274 164-255 (485)
101 KOG4812 Golgi-associated prote 67.2 13 0.00028 35.8 5.6 69 447-519 161-244 (262)
102 COG1114 BrnQ Branched-chain am 66.2 1.5E+02 0.0032 31.4 13.5 78 176-265 262-339 (431)
103 COG0814 SdaC Amino acid permea 64.4 1E+02 0.0022 32.7 12.6 138 350-492 227-377 (415)
104 KOG2349 Na+:iodide/myo-inosito 62.2 2.2E+02 0.0048 31.6 14.6 35 109-143 44-79 (585)
105 PF02468 PsbN: Photosystem II 50.8 18 0.00039 25.0 2.6 29 349-377 4-32 (43)
106 KOG1291 Mn2+ and Fe2+ transpor 50.7 3.5E+02 0.0076 29.1 18.9 42 437-478 355-399 (503)
107 PRK13183 psbN photosystem II r 48.4 19 0.00041 25.3 2.4 30 348-377 6-35 (46)
108 CHL00020 psbN photosystem II p 46.6 17 0.00036 25.2 1.9 30 348-377 3-32 (43)
109 PF11085 YqhR: Conserved membr 45.8 74 0.0016 29.2 6.5 86 191-285 68-153 (173)
110 PRK09928 choline transport pro 40.7 4.2E+02 0.0092 30.1 12.8 134 142-280 358-496 (679)
111 PRK15433 branched-chain amino 38.4 2.3E+02 0.005 30.4 9.9 65 177-253 265-329 (439)
112 KOG3659 Sodium-neurotransmitte 36.8 6.4E+02 0.014 28.1 16.2 71 115-189 85-160 (629)
113 PRK09950 putative transporter; 36.2 6.1E+02 0.013 27.8 27.9 53 174-227 164-220 (506)
114 PF02028 BCCT: BCCT family tra 35.8 2.8E+02 0.0061 30.1 10.4 121 144-270 343-465 (485)
115 PRK10263 DNA translocase FtsK; 35.7 7.8E+02 0.017 30.3 14.5 22 350-371 25-46 (1355)
116 PLN02680 carbon-monoxide oxyge 34.3 4.4E+02 0.0096 25.6 12.6 96 306-420 48-143 (232)
117 PF05805 L6_membrane: L6 membr 30.1 1.2E+02 0.0027 28.5 5.6 62 464-525 45-117 (195)
118 PF06800 Sugar_transport: Suga 29.2 5.5E+02 0.012 25.6 10.3 52 439-490 196-247 (269)
119 TIGR00909 2A0306 amino acid tr 28.7 6.9E+02 0.015 26.1 12.5 46 178-224 265-310 (429)
120 PF09971 DUF2206: Predicted me 26.2 7.6E+02 0.017 25.7 11.9 43 440-482 148-190 (367)
121 KOG2418 Microtubule-associated 24.8 1.5E+02 0.0032 30.5 5.4 13 176-188 350-362 (448)
122 KOG1619 Cytochrome b [Energy p 24.6 6E+02 0.013 24.8 9.2 97 306-420 56-152 (245)
123 KOG1289 Amino acid transporter 24.5 9.8E+02 0.021 26.4 11.9 46 177-223 325-370 (550)
124 cd08765 Cyt_b561_CYBRD1 Verteb 23.8 4.6E+02 0.01 23.7 8.0 69 343-420 43-111 (153)
125 cd08764 Cyt_b561_CG1275_like N 21.4 7.3E+02 0.016 23.8 9.8 67 347-420 57-123 (214)
126 COG1292 BetT Choline-glycine b 20.7 7.3E+02 0.016 27.3 10.0 66 205-270 412-478 (537)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-59 Score=485.31 Aligned_cols=409 Identities=36% Similarity=0.632 Sum_probs=359.6
Q ss_pred cCCCCCCcccccccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh--hhcC
Q 009363 96 RLDPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN--VETG 173 (536)
Q Consensus 96 ~~~~~~~~~~~~~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~--~~~g 173 (536)
++.++|+|.+.+++|++||+++++|.++.++|+|+|+||||++++||+.|++++++.++++.||..+|.+|.+. ...+
T Consensus 22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~ 101 (437)
T KOG1303|consen 22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG 101 (437)
T ss_pred cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 45778889999999999999999999999999999999999999999999999999999999999999888665 2566
Q ss_pred CccccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhc
Q 009363 174 MRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLS 253 (536)
Q Consensus 174 ~~~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~ 253 (536)
+|+.+|.|+++++||++...++..+ ....++|+|+.|++..+|+++.+++..+.+.+ .++.+.|+++++++++|++
T Consensus 102 ~r~~~Y~dl~~~afG~~~~~iv~~~-~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---~l~~~~f~iif~~i~~~~s 177 (437)
T KOG1303|consen 102 KRRYRYPDLGQAAFGPKGRLLVSVL-QYLELFGICVVYIILAGDNLKALFPIVSLNDN---SLDKQYFIIIFGLIVLPLS 177 (437)
T ss_pred ccCCChHHHHHHHhCCCceEeeeHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---cccceehhhhHHHHHHHHH
Confidence 7889999999999999774444444 55566999999999999999999998765421 4557789999999999999
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHhhhheeeccCCCCcc-cCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHh
Q 009363 254 QLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVS-YNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQA 332 (536)
Q Consensus 254 ~l~~l~~l~~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~ 332 (536)
++||++.++++|.+++++.+.+.++.+..++.+|...+.. .+.....+ . ...++++|+++|+|++|.++||||+
T Consensus 178 ~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~--~---~~~f~a~g~iaFaf~gH~v~peIq~ 252 (437)
T KOG1303|consen 178 QLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGT--I---PTVFTALGIIAFAYGGHAVLPEIQH 252 (437)
T ss_pred HCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCC--C---cchhhhhhheeeeecCCeeeeehHh
Confidence 9999999999999999999999999988888887544222 22111111 1 1118999999999999999999999
Q ss_pred hCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 009363 333 TMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSS 412 (536)
Q Consensus 333 ~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s 412 (536)
+| |+|.+ |+|++..++.+++++|+.+++.||++|||++++ +++.++ ..+.|+...+++++.+|++.+
T Consensus 253 tM----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~-~il~s~------~~p~~~~~~ani~i~~h~i~s 319 (437)
T KOG1303|consen 253 TM----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD-NILLSL------QPPTWLIALANILIVLHLIGS 319 (437)
T ss_pred hc----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch-hhhhcc------cCchhHHHHHHHHHHHHHhhh
Confidence 99 77777 679999999999999999999999999999999 999988 257899999999999999999
Q ss_pred hhhhccchHHHHHHHhhhcCCC-C-CCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhc
Q 009363 413 FQIYGMPMFDDLESLYVRRKKK-P-CPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVK 489 (536)
Q Consensus 413 ~pl~~~p~~~~le~~~~~~~~~-~-~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~ 489 (536)
|+++.+|+.+.+|+.+..++++ . ...+.|.+.|..+++.+.++|+.+|+|+++++++||+.. ++++++|++||++.+
T Consensus 320 ~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~ 399 (437)
T KOG1303|consen 320 YQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIK 399 (437)
T ss_pred hhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987654441 1 235689999999999999999999999999999999999 999999999999999
Q ss_pred CCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Q 009363 490 KPKAYGPIWWLNWVL-GVLGIILSVLVTASGIYVIADT 526 (536)
Q Consensus 490 ~~~~~~~~~~~~~~l-i~~G~v~~v~gt~~si~~ii~~ 526 (536)
|.++++.+|+.+|.+ .++|+++++....++++.++.+
T Consensus 400 k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 400 KPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999999999999 7999999999999999998864
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.3e-56 Score=478.74 Aligned_cols=399 Identities=17% Similarity=0.213 Sum_probs=320.6
Q ss_pred CCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcch
Q 009363 110 RNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGE 189 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~ 189 (536)
.+++..++++|++|+++|+|+|+||+||+++||++|+++++++++++.||.++|.+++++ .+..+|+|+++++||+
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~----~~~~sY~~la~~~~G~ 133 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK----TNIRTYEGVARVLLGP 133 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHhCH
Confidence 478999999999999999999999999999999999999999999999999999999887 4567999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCC-CCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHH
Q 009363 190 KLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGA-TCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVG 268 (536)
Q Consensus 190 ~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~ 268 (536)
++++++ .+.+...++|+|++|+++.+|.++.+++..... ........+..+.+++.++++|++++|++++|+++|.++
T Consensus 134 ~g~~~v-~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 134 WGSYYV-AATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 655444 445577779999999999999999988642111 000001122334455667788999999999999999999
Q ss_pred HHHHHHHHHHhhhheeeccCCCCcc---cCCCC-CCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCcc
Q 009363 269 AITAVGYCTIIWVVSVAKGRLPGVS---YNPVQ-TDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTV 344 (536)
Q Consensus 269 ~~~~v~~~~ii~~~~~~~g~~~~~~---~~~~~-~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~ 344 (536)
+++++++++++++.+..++.+++.+ ++... .+........+++.++|+++|||.||.+++++++|| |+|+.+
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~ 288 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVG 288 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchh
Confidence 9877766655555555555433221 11100 000001122468899999999999999999999999 889988
Q ss_pred CcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHH
Q 009363 345 PMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDL 424 (536)
Q Consensus 345 ~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~l 424 (536)
++.+++..++.+++++|.++|++||++||+++++ ||+.|+ + +..+....+++++++++++++||++.+|+|+.+
T Consensus 289 ~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~-~Illn~---~--p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i 362 (467)
T PTZ00206 289 KFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTG-SVLLMY---D--PVNEPAIMVGFVGVLVKLFVSYALLGMACRNAL 362 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccch-HHHHhC---C--CCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 8889999999999999999999999999999999 999887 2 123445677889999999999999999999999
Q ss_pred HHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhc---CCCCCchhHHH
Q 009363 425 ESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVK---KPKAYGPIWWL 500 (536)
Q Consensus 425 e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~---~~~~~~~~~~~ 500 (536)
++.+..+ .++.+.|+|...+..+.++++++|+++|+++.+++++||+++ .++|++|+++|++.. +++.+..+|+.
T Consensus 363 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~ 441 (467)
T PTZ00206 363 YDVIGWD-ARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYIS 441 (467)
T ss_pred HHHhCCC-cccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHH
Confidence 9976433 333455777777777788889999999999999999999999 999999999999842 22333345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009363 501 NWVLGVLGIILSVLVTASGIYVIA 524 (536)
Q Consensus 501 ~~~li~~G~v~~v~gt~~si~~ii 524 (536)
++.++++|++..+.||++++++.+
T Consensus 442 ~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 442 TYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHhheEEecchhHhhHHh
Confidence 999999999999999999999986
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-54 Score=437.98 Aligned_cols=387 Identities=20% Similarity=0.254 Sum_probs=334.6
Q ss_pred CCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh-h-hcCCccccHHHHHHhhc-
Q 009363 111 NGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN-V-ETGMRYSRYLQLCGVTF- 187 (536)
Q Consensus 111 ~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~-~-~~g~~~~sY~~l~~~~f- 187 (536)
..|..++..|+.|.++|+|+|++|+||+++||+.|.+..+++++++.|+++.|++|.++ + +.+....+|++.++.++
T Consensus 46 ~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~ 125 (449)
T KOG1304|consen 46 PTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAME 125 (449)
T ss_pred CCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHc
Confidence 46889999999999999999999999999999999999999999999999999998765 2 22334578888888766
Q ss_pred ---------chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCc
Q 009363 188 ---------GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNL 258 (536)
Q Consensus 188 ---------G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l 258 (536)
|+ ++|.+..+.++..|+|.|++|+++++++++++.+... ...++.+.|+++..+..++++++||+
T Consensus 126 ~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~-----~~~~s~~~~i~~~~~~~lll~~Ir~L 199 (449)
T KOG1304|consen 126 GGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS-----PGVLSVRLYILIQLPPLLLLNLIRNL 199 (449)
T ss_pred CCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC-----CCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 45 4566666667888899999999999999999998322 26778889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCC
Q 009363 259 NSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSE 338 (536)
Q Consensus 259 ~~l~~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~ 338 (536)
+.|+.+|+++.+++++..+++.++.+.+.. +-.+. +. ..++.++..++|+.+|||+|+.+++|++++|
T Consensus 200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~~~~---~~----~~~~~~~~lf~GtaifafEGig~VLPlEn~M---- 267 (449)
T KOG1304|consen 200 KILSPFSLFANVFILVGLAIIMYYLVQDLP-PTSDL---PA----VTGWSGLPLFFGTAIFAFEGIGMVLPLENSM---- 267 (449)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccC-Ccccc---cc----ccchhhhHHHHHHHHHHhccceEEEehhhcc----
Confidence 999999999999888766666665544322 11111 11 4447799999999999999999999999999
Q ss_pred CCCCccCcc-hhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhc
Q 009363 339 KHPSTVPMW-KGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYG 417 (536)
Q Consensus 339 k~ps~~~~~-~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~ 417 (536)
|+|+++.-. ++...++.++.++|..+|.+||++||+++++ .|+.|+ ++ +|+...+++++++.++++||+++
T Consensus 268 k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~-sITLNL------P~-~~l~~~Vkl~~ai~I~ls~pLQ~ 339 (449)
T KOG1304|consen 268 KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKG-SITLNL------PQ-EILSQTVKLLLAIAIFLTYPLQF 339 (449)
T ss_pred cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccc-eEEecC------Cc-cHHHHHHHHHHHHHHHHcCchhh
Confidence 999887643 4666699999999999999999999999999 999999 55 78999999999999999999999
Q ss_pred cchHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCCCC---
Q 009363 418 MPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKPKA--- 493 (536)
Q Consensus 418 ~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~~~--- 493 (536)
+|..+.+|+.+.+|..+.+.++..+.+|..+++++..+|.++|+++.+++++|++++ .+++++|++++++.++++.
T Consensus 340 yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~ 419 (449)
T KOG1304|consen 340 YVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGR 419 (449)
T ss_pred hhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCc
Confidence 999999999887665555567889999999999999999999999999999999999 9999999999999988654
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009363 494 YGPIWWLNWVLGVLGIILSVLVTASGIYVI 523 (536)
Q Consensus 494 ~~~~~~~~~~li~~G~v~~v~gt~~si~~i 523 (536)
+.++++.|.+++++|++.++.|||.++.++
T Consensus 420 ~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 420 FMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 346778899999999999999999999864
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.7e-53 Score=448.40 Aligned_cols=392 Identities=28% Similarity=0.478 Sum_probs=328.6
Q ss_pred CCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhc-CCccccHHHHHHhhcc
Q 009363 110 RNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVET-GMRYSRYLQLCGVTFG 188 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~-g~~~~sY~~l~~~~fG 188 (536)
||+|++++++|++|+++|+|+|+||++|+++||++|++++++++.++.||.++|.|+++. .+ +++..+|+|++++++|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~-~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANA-MPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccc-ccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999999875 22 4568999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHH
Q 009363 189 EKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVG 268 (536)
Q Consensus 189 ~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~ 268 (536)
+++++++..+ +...++|.|++|+++.+|.+.+++....++ ...++..|.+++.++++|++++|++++++++|.++
T Consensus 80 ~~~~~~~~~~-~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~ 154 (409)
T PF01490_consen 80 PKGKWFVDIC-IFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILG 154 (409)
T ss_pred ccccccccch-heeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhh
Confidence 9876666665 466669999999999999999998875432 23457778888888899999999999999999999
Q ss_pred HHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCc-cCcc
Q 009363 269 AITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPST-VPMW 347 (536)
Q Consensus 269 ~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~-~~~~ 347 (536)
+++++.++++.++........++.+...... .. ..++.+++.++|+++|||.||.++|++++|| |+|++ ++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~ 228 (409)
T PF01490_consen 155 LFSIFYFIVIVVIYIISYGPGEPSGVPSPPV-WP-FISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMK 228 (409)
T ss_pred hhccceeeeeecceeeeeecccccccccccc-cc-cchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccc
Confidence 9877654333333222222211111110101 11 3456799999999999999999999999999 88888 6788
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHH
Q 009363 348 KGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESL 427 (536)
Q Consensus 348 ~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~le~~ 427 (536)
++...++.+++++|+.+|+.||++||+++++ |+++|+ +.+++...++++++.++++.+||++.+|.++.+++.
T Consensus 229 ~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~-~il~n~------~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~ 301 (409)
T PF01490_consen 229 KVLSISMIICFIIYLLFGIFGYLAFGDSVQG-NILLNL------PNDDVLIIIARILLVISLLLSYPLQLFPARNSLENL 301 (409)
T ss_pred eeeeehhhhhhHHhhhhhhcccceeeeeecc-hhhhcC------CCcccccccccccchhhhhhccccccchhHhhhhhh
Confidence 9999999999999999999999999999999 999998 334467889999999999999999999999999998
Q ss_pred hhhc--------CCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCCCCCchhH
Q 009363 428 YVRR--------KKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKPKAYGPIW 498 (536)
Q Consensus 428 ~~~~--------~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~~~~~~~~ 498 (536)
+.++ ++++.++++|..+|+.+++.++++|+.+|+++++++++|++++ .+.|++|+++|+|.+++++++.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~ 381 (409)
T PF01490_consen 302 LFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGW 381 (409)
T ss_pred eeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccce
Confidence 7643 2233456889999999999999999999999999999999999 999999999999999877654433
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHH
Q 009363 499 -----WLNWVLGVLGIILSVLVTASGI 520 (536)
Q Consensus 499 -----~~~~~li~~G~v~~v~gt~~si 520 (536)
..++.++++|++.++.|+++++
T Consensus 382 ~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 382 WWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred eehhhccceEEEEEeeehhHHhHHHHc
Confidence 3478889999999999998875
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.2e-48 Score=415.84 Aligned_cols=391 Identities=17% Similarity=0.225 Sum_probs=315.6
Q ss_pred CCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh-h----hcCC--cc--ccHHH
Q 009363 111 NGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN-V----ETGM--RY--SRYLQ 181 (536)
Q Consensus 111 ~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~-~----~~g~--~~--~sY~~ 181 (536)
+++..++.+|+++..+|.|+|+||+||+++||++|+++++++++++.||.++|.++..+ + .++. ++ .+|.|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999986432 1 1111 11 37899
Q ss_pred HHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchh
Q 009363 182 LCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSI 261 (536)
Q Consensus 182 l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l 261 (536)
+++..+||+++++...+..+. +++.|+.|++..++.+..+. ..++.+.|.+++.+++++++++|+++++
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~-l~~~~v~~li~~~~~~~~l~----------~~~~~~~~~~i~~~v~~~~~~i~sl~~l 193 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTF-LLFGSVIQLIACASNIYYIN----------DNLDKRTWTYIFGACCATTVFIPSFHNY 193 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhC----------CCcCCCeEEeehHHHHHHHHHccCHHHH
Confidence 999999998877776665444 58889999998777666541 2345778999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCC
Q 009363 262 AGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHP 341 (536)
Q Consensus 262 ~~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~p 341 (536)
+++|.+|+.++++....+++..+.++..++.+++ . ..++..++.++++++|||++|.++|++++|| |+|
T Consensus 194 ~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~------~-~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P 262 (473)
T PLN03074 194 RIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS------G-PTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKP 262 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC------C-chhHHHHHHHHHHHHHHhcccccHHHHHHhc----cCh
Confidence 9999999887665444444444444444433332 1 2345678888899999999999999999999 999
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCc-chhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccch
Q 009363 342 STVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPS-GGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPM 420 (536)
Q Consensus 342 s~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~-~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~ 420 (536)
++++ +....++.+++.+|+.+|+.||++|||++++ .+.+.++ +.+. ...+++++++++++.+|+++..|+
T Consensus 263 ~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~l------p~~~-~~~~~~~~~~i~~~~sy~l~~~p~ 333 (473)
T PLN03074 263 QKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLL------PRSG-WRDAAVILMLIHQFITFGFACTPL 333 (473)
T ss_pred hccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcC------CCch-HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9887 7778899999999999999999999998764 2566666 2223 357889999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCCC-------
Q 009363 421 FDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKPK------- 492 (536)
Q Consensus 421 ~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~~------- 492 (536)
.+.+|+....+ +....+.|.++|+.++++++++|+.+|+|+.+++|+||+++ .++|++|+++|++.++++
T Consensus 334 ~~~~e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~ 411 (473)
T PLN03074 334 YFVWEKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAA 411 (473)
T ss_pred HHHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcc
Confidence 99999976432 22345789999999999999999999999999999999999 999999999999866542
Q ss_pred ------CCchh--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHccccccccC
Q 009363 493 ------AYGPI--WWLNWVLGVLG-IILSVLVTASGIYVIADTGIKVSFFD 534 (536)
Q Consensus 493 ------~~~~~--~~~~~~li~~G-~v~~v~gt~~si~~ii~~~~~~~~f~ 534 (536)
.+.++ .+.|+++++++ ++..+.|+|+++++++++.+++++|+
T Consensus 412 ~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 412 EKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred cCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 11222 36799999864 55468999999999999999988764
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-45 Score=378.43 Aligned_cols=400 Identities=21% Similarity=0.289 Sum_probs=328.0
Q ss_pred CCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcch
Q 009363 110 RNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGE 189 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~ 189 (536)
++.|.+.+++|++|+++|+|+|++|+||++.|++.|+++++++++++.++.+++.++.++ .+ ..+|++++++++|+
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~--~~--~~ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK--SG--ERTYSSLGDLIFGK 79 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh--cC--CCCHHHHHHHHcCC
Confidence 456889999999999999999999999999999999999999999999999999999988 33 34999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCch-h-hHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 190 KLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTV-E-WYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 190 ~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~-~-~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
. ++............| |++|+++++|.+..+......+...+..|.++ . |.++.++++.||++.|+++++++.|.+
T Consensus 80 ~-g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 80 L-GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL 157 (411)
T ss_pred C-ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5 455544444444466 79999999999997766543221111112322 2 567777788899999999999999999
Q ss_pred HHHHHHHHHHHhhhheeeccC-CCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCc
Q 009363 268 GAITAVGYCTIIWVVSVAKGR-LPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPM 346 (536)
Q Consensus 268 ~~~~~v~~~~ii~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~ 346 (536)
++++++.++.++++....... .++..++ .++ ...+++++.++++++|||.||.++.++++|| |||++++|
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i 228 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSYL--VPN---LSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKI 228 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcccc--cCC---cchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHH
Confidence 999988888777776665432 1222222 111 2223689999999999999999999999999 99999999
Q ss_pred chhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHHHH
Q 009363 347 WKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLES 426 (536)
Q Consensus 347 ~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~le~ 426 (536)
.++...+...+.++|..+|++||+.||+++.+ |++.++......+-..+....++..++++++.++|+..+|+|..+++
T Consensus 229 ~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~-n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~ 307 (411)
T KOG1305|consen 229 QRVSNIAIILATLIYLLTGLFGYLTFGDLVKG-NLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDE 307 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheecccchH-HHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 99999999999999999999999999999999 99987632111111112357899999999999999999999999988
Q ss_pred HhhhcCCC--CCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCCCCCchhHHHHHH
Q 009363 427 LYVRRKKK--PCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKPKAYGPIWWLNWV 503 (536)
Q Consensus 427 ~~~~~~~~--~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~~~~~~~~~~~~~ 503 (536)
.+.+...+ ...+.++.+++..++..+.+.|+.+|+++.+++++||+++ .+.|++|+++|++..|+ .+.+....+.
T Consensus 308 ~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~ 385 (411)
T KOG1305|consen 308 LLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALI 385 (411)
T ss_pred HhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHH
Confidence 77654432 2456788899999999999999999999999999999999 99999999999999987 4556677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Q 009363 504 LGVLGIILSVLVTASGIYVIADTG 527 (536)
Q Consensus 504 li~~G~v~~v~gt~~si~~ii~~~ 527 (536)
..++++..+++|++.-+.++..+.
T Consensus 386 ~~~~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 386 FLILGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988764
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1e-39 Score=315.20 Aligned_cols=389 Identities=17% Similarity=0.250 Sum_probs=322.5
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhh-hcC---CccccHHHHH
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENV-ETG---MRYSRYLQLC 183 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~-~~g---~~~~sY~~l~ 183 (536)
.+.+.+.+++..|+.|++-|.=+++||+|....||. ++..++.++.+++||..+|++|..++ ++| +.+.+|.++|
T Consensus 113 ~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA 191 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIA 191 (524)
T ss_pred CCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHH
Confidence 345678999999999999999999999999999995 99999999999999999999997651 112 2357999999
Q ss_pred Hhhcchhhh-HHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhh
Q 009363 184 GVTFGEKLA-KWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIA 262 (536)
Q Consensus 184 ~~~fG~~~g-~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~ 262 (536)
..+++|+.| |++....++- ...+|+.|+++.||.+..-+.. ...+.+-|.++....++|.+++|+++..+
T Consensus 192 ~~C~~P~lGgr~V~~AQliE-LlmTCIlYvVv~gdLl~~~fP~--------~svd~~sWm~i~~a~LLpc~FLk~Lk~VS 262 (524)
T KOG4303|consen 192 DFCYKPGLGGRWVLAAQLIE-LLMTCILYVVVAGDLLQSCFPG--------LSVDKASWMMITSASLLPCSFLKDLKIVS 262 (524)
T ss_pred HHhcCCCcchheeeHHHHHH-HHHHHHhhhheechhhhccCCC--------CCccccchhhhhhHHHhhhHHHHHHHHHH
Confidence 999998876 7776665444 4889999999999998864442 34567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCC
Q 009363 263 GVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPS 342 (536)
Q Consensus 263 ~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps 342 (536)
.+|++..++-++.-++++.+++..-. +..|+.++. .-+..+++..+|+++|+|..|...|.+...| |+|+
T Consensus 263 ~lSf~ct~sH~viN~i~v~YCLs~~~--dW~wskv~F----sidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps 332 (524)
T KOG4303|consen 263 RLSFFCTISHLVINLIMVLYCLSFVS--DWSWSKVTF----SIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPS 332 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hccceeEEE----EEEcccCceEEEEEEEeeeceeecccccccc----CChh
Confidence 99999888766655666666654321 222332221 2234578888999999999999999999999 9999
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 009363 343 TVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFD 422 (536)
Q Consensus 343 ~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~ 422 (536)
+++ ....++-+..+++-..+|..||++||+.++. .|.+|+ |+ .-...++++++++..+.|||+-.+...+
T Consensus 333 ~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tqe-vItnnL---p~----qsfk~~VN~fLV~KALLSYPLPfyAAve 402 (524)
T KOG4303|consen 333 QFN--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQE-VITNNL---PN----QSFKILVNLFLVVKALLSYPLPFYAAVE 402 (524)
T ss_pred Hhe--eeeehHHHHHHHHHHHHHHheeeeechhhHH-HHhcCC---Cc----cchhhhhhHHHHHHHHHcCCchHHHHHH
Confidence 987 5677788888889999999999999999999 999988 22 2356788999999999999999999999
Q ss_pred HHHHHhhhcCCCC-CC-------c--hhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCC
Q 009363 423 DLESLYVRRKKKP-CP-------W--WLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKP 491 (536)
Q Consensus 423 ~le~~~~~~~~~~-~~-------~--~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~ 491 (536)
.+|+.+....++. .+ . -....+|..+++.+.++|+.+|+|..+++++|++.+ .++|+.|++||++++++
T Consensus 403 lLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~ 482 (524)
T KOG4303|consen 403 LLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEK 482 (524)
T ss_pred HHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHH
Confidence 9999876543331 11 1 223567889999999999999999999999999999 99999999999999988
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 009363 492 KAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADT 526 (536)
Q Consensus 492 ~~~~~~~~~~~~li~~G~v~~v~gt~~si~~ii~~ 526 (536)
.....+...+..++++|...++.|.|.+..++++.
T Consensus 483 ~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A 517 (524)
T KOG4303|consen 483 TLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRA 517 (524)
T ss_pred hhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHH
Confidence 77777788899999999999999999999999874
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-31 Score=275.40 Aligned_cols=394 Identities=18% Similarity=0.173 Sum_probs=289.6
Q ss_pred cCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcc
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFG 188 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG 188 (536)
+.+.+..++++++++++||+|+|++|++++..|++++++++++++.+++++.+++.|+..+ . +++..+|.+++++.+|
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~-~-~~~~~~~~~~~~~~~G 83 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLS-S-PNGKASITSLVEDYLG 83 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcccHHHHHHHHhC
Confidence 3456789999999999999999999999999999999999999999999999999999887 2 2222599999999999
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHH
Q 009363 189 EKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVG 268 (536)
Q Consensus 189 ~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~ 268 (536)
|+++.+.... +...++|.+++|.+..+|.+.++++..... ..+.+..+.+++..++.++++.++...++..+.+.
T Consensus 84 ~~~~~li~~s-~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~----~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~ 158 (415)
T COG0814 84 KKGGILIGLS-YFFALYGLLVAYIVGIGNLLASFLGNQFGL----NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLV 158 (415)
T ss_pred cchHHHHHHH-HHHHHHHHHHHHHhcchhHHHHHHHhhccc----CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 9766666555 577779999999999999999999875432 11557777888888888899999999999999999
Q ss_pred HHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcch
Q 009363 269 AITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWK 348 (536)
Q Consensus 269 ~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~ 348 (536)
...+.++++...+....-+ .. .....+... ...+..+..++|+++|||+||++++++++|| |++++++.+|
T Consensus 159 ~~~v~~~~~l~~~~~~~~~-~~--~l~~~~~~~--~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k 229 (415)
T COG0814 159 FGKVIYLVLLVVYLIPHWN-PA--NLFALPSAS--QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRK 229 (415)
T ss_pred HHHHHHHHHHHHHHhcccC-HH--HHhcccccc--hhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHH
Confidence 8876666655544432210 00 000000000 1346789999999999999999999999999 6666655679
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCC-------CchHHHHHHHHHHHHHHHHHhhhhhccchH
Q 009363 349 GVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHAT-------DTSRFILGLTSLFVIISAVSSFQIYGMPMF 421 (536)
Q Consensus 349 ~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~-------~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~ 421 (536)
+...+..+..++|+.++.++|..+|+.+.+ |++++..+...- ..........+++-.+++..||--.....+
T Consensus 230 ~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~-~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~ 308 (415)
T COG0814 230 AILIGSLIALVLYILVGFFVFGCFGSLVFG-NILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLF 308 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHH-HHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHH
Confidence 999999999999999999999999999998 888776110000 011112334444445555555444444555
Q ss_pred HHHHHHhhhcCCC--CCCchh--hHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCCCCCch
Q 009363 422 DDLESLYVRRKKK--PCPWWL--RPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKPKAYGP 496 (536)
Q Consensus 422 ~~le~~~~~~~~~--~~~~~~--r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~~~~~~ 496 (536)
|.+++.+.+.+.+ +...+. ......+.++....++...+..+.+++.+|+... .+.++.|...+.+....++++.
T Consensus 309 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g 388 (415)
T COG0814 309 EGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGG 388 (415)
T ss_pred HhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCC
Confidence 6666655431111 111122 2333444566677788888889989999999999 9999999998877766555444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 009363 497 IWWLNWVLGVLGIILSVLVTASG 519 (536)
Q Consensus 497 ~~~~~~~li~~G~v~~v~gt~~s 519 (536)
++...++++++|+..++...++.
T Consensus 389 ~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 389 NFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 33567788888888877666544
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.94 E-value=3e-24 Score=222.44 Aligned_cols=354 Identities=15% Similarity=0.068 Sum_probs=248.3
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
+++++++.+++++.+..+.||+|+|+||++.++.|+.+++++++++++.+.||..++.|...+ . ++..++..++++.
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~-~--~~g~~~~tma~~~ 82 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLN-Y--RIGSSFDTITKDL 82 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--CCCCCHHHHHHHH
Confidence 456688999999999999999999999999999999999999999999999999999998655 2 3467999999999
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhcc--CCCcchhhHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQ--LPNLNSIAGV 264 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~--l~~l~~l~~~ 264 (536)
+||+ ++++..+.+.++.++.+++|+.-+||.+++.++.. + ...+.+.-.++|+.+.-.+.+ .|..+++..+
T Consensus 83 LG~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~-----~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~ 155 (414)
T PRK10483 83 LGKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S-----LNVPARAAGFGFALLVAFVVWLSTKAVSRMTAI 155 (414)
T ss_pred cChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C-----CCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9995 66676777778889999999999999999988752 1 122233333444443333332 2333333333
Q ss_pred HHHHHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCcc
Q 009363 265 SLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTV 344 (536)
Q Consensus 265 S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~ 344 (536)
=+.+.+.++...+....-.+..+...+..++ . ...+.....++|++++||+.|+++|++.++++ ++++
T Consensus 156 l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~-----~--~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~-- 223 (414)
T PRK10483 156 VLGAKVITFFLTFGSLLGHVQPATLFNVAES-----N--ASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK-- 223 (414)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHhccccc-----c--chhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--
Confidence 3333332222111111111110000000011 0 22345688999999999999999999999993 2233
Q ss_pred CcchhhHHHHHHHHHHHHH--HHhHHhhh---------cCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 009363 345 PMWKGVKFAYLIIATCLFP--IAIGGYWA---------YGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSF 413 (536)
Q Consensus 345 ~~~~~v~~a~~i~~~~Y~~--~gi~GY~~---------fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~ 413 (536)
+.+|++..+..+..++|++ +.+.|-.. -|++. + ..++.+.+ ..++.++..+..++-.+++.+||
T Consensus 224 kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~-~L~~~l~~---~~~~~~i~~~~~~Fa~~Ai~TSF 298 (414)
T PRK10483 224 TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-D-VLVQALSG---VLNSRSLDLLLVVFSNFAVASSF 298 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-H-HHHHHHHH---hcCChHHHHHHHHHHHHHHHHHH
Confidence 5569999999999999987 33333221 22222 1 22233321 12334566778889999999999
Q ss_pred hhhccchHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhHhhhHhHhhHHhhHhhcCC
Q 009363 414 QIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPF-LGSLAGLIGGIALPVTLAYPCFMWLKVKKP 491 (536)
Q Consensus 414 pl~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~-~~~v~~lvGa~~~~l~filP~l~~l~~~~~ 491 (536)
--....++|.+.+.+..++++ ..|.....+.++..+++|...|+ |-..++..|..+..+..++|++|.++.||+
T Consensus 299 lGv~LGL~d~l~D~~k~~~~~----~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 299 LGVTLGLFDYLADLFGFDDSA----MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCcc----ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999977543321 34555556778899999999998 888999999775588899999999999975
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.93 E-value=3.4e-23 Score=216.29 Aligned_cols=372 Identities=20% Similarity=0.186 Sum_probs=253.5
Q ss_pred CCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchh
Q 009363 111 NGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEK 190 (536)
Q Consensus 111 ~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~ 190 (536)
+.+.+++++.+..+.||+|+|+||++.+..|..++++++++++..+++|..++.|...+ . ++..+|.+++++.+||+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~-~--~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLN-T--PEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--CCCCCHHHHHHHHhChH
Confidence 45789999999999999999999999999999999999999999999999999998655 2 33789999999999997
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHH
Q 009363 191 LAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAI 270 (536)
Q Consensus 191 ~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~ 270 (536)
++.+... .+....++.+++|+.-+++.+++.+....+ ..++.+.-.+++.++...+... .-+....++-+-+.
T Consensus 79 g~~~~~~-~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-----~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~ 151 (394)
T PF03222_consen 79 GGIVIGI-SYLFLLYALLVAYISGGGSILSSLLGNQLG-----TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVF 151 (394)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHccHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 5555554 466777999999999999999999887542 1222332223333332222211 22233334333332
Q ss_pred HHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhh
Q 009363 271 TAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGV 350 (536)
Q Consensus 271 ~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v 350 (536)
..+......+...+.+-+.+..... ... ..++...+.++|++++||..|+++|++.+.++ ++ +++.+|++
T Consensus 152 ~~i~~~~~l~~~~~p~~~~~~L~~~----~~~-~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d--~~k~~~ai 221 (394)
T PF03222_consen 152 GMIISFIILVVYLIPHWNPSNLLDA----PPS-PSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GD--PKKIRKAI 221 (394)
T ss_pred HHHHHHHHHHHHHhhhcCHHHhhcc----ccc-cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---cc--HHHHHHHH
Confidence 2221111111111111111111110 011 35677889999999999999999999999994 22 33445899
Q ss_pred HHHHHHHHHHHHHH--HhHHhh---------hcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccc
Q 009363 351 KFAYLIIATCLFPI--AIGGYW---------AYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMP 419 (536)
Q Consensus 351 ~~a~~i~~~~Y~~~--gi~GY~---------~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p 419 (536)
..+..+..++|++. .+.|-. ..+++. + .+...+.+ ...+.+...+..++-.+++.+||--....
T Consensus 222 ~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~-~-~~~~~~~~---~~~s~~i~~~~~~fa~~Ai~TSFlGv~lg 296 (394)
T PF03222_consen 222 IIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV-S-ALVSALAN---VSGSPWISILGSIFAFFAIATSFLGVYLG 296 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh-H-HHHHHHHh---hcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888774 333411 112111 1 22222211 12345677788999999999999999999
Q ss_pred hHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhHh-hhHhHhhHHhhHhhcCCCCCch-
Q 009363 420 MFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPF-LGSLAGLIGGIAL-PVTLAYPCFMWLKVKKPKAYGP- 496 (536)
Q Consensus 420 ~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~-~~~v~~lvGa~~~-~l~filP~l~~l~~~~~~~~~~- 496 (536)
++|.+++.+.. +++ ...|.....+..+..+++|...|+ |-..+++.| ... .+..++|+++.+|.|++++...
T Consensus 297 l~d~l~d~~k~-~~~---~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~ 371 (394)
T PF03222_consen 297 LFDFLADLFKL-KNN---SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPY 371 (394)
T ss_pred HHHHHHHHHcC-Ccc---ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCe
Confidence 99999997754 222 245555566677888999999997 889999999 777 9999999999999987654321
Q ss_pred ----hHHHHHHHHHHHHHHH
Q 009363 497 ----IWWLNWVLGVLGIILS 512 (536)
Q Consensus 497 ----~~~~~~~li~~G~v~~ 512 (536)
.+.....++++|++..
T Consensus 372 ~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 372 RVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred EEeCcHHHHHHHHHHHHHHH
Confidence 2334445555555443
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=4.2e-23 Score=213.77 Aligned_cols=375 Identities=15% Similarity=0.075 Sum_probs=251.8
Q ss_pred CCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchh
Q 009363 111 NGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEK 190 (536)
Q Consensus 111 ~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~ 190 (536)
|.+...+++.+..++||+|+|+||.+-++.|+.+++++++++++.+.||..++.|...+ . ++..++..++++.+||+
T Consensus 8 ~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~-~--~~g~~l~tma~~~LG~~ 84 (415)
T PRK09664 8 KHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLN-Y--PVGSSFNTITKDLIGNT 84 (415)
T ss_pred ccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--CCCCCHHHHHHHHcChH
Confidence 44888899999999999999999999999999999999999999999999999998765 2 34689999999999995
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhcc--CCCcchhhHHHHHH
Q 009363 191 LAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQ--LPNLNSIAGVSLVG 268 (536)
Q Consensus 191 ~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~--l~~l~~l~~~S~i~ 268 (536)
++++..+...++.++.+++|+.-+|+.+++.++...+ ...+.+.-.++|+.+.-.+.+ .|-.+++..+=+.+
T Consensus 85 -g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~-----~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~ 158 (415)
T PRK09664 85 -WNIISGITVAFVLYILTYAYISANGAIISETISMNLG-----YHANPRIVGICTAIFVASVLWISSLAASRITSLFLGL 158 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 6667777677778999999999999999998875221 112222223444443333322 23333333333322
Q ss_pred HHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcch
Q 009363 269 AITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWK 348 (536)
Q Consensus 269 ~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~ 348 (536)
.+..+...+....-.+......+.+.+ .. . ...+..+..++|++++||+.|+++|++.+.++ +++++. +|
T Consensus 159 ~ii~f~~~~~~l~~~i~~~~L~~~~~~---~~-~-~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~~--~k 228 (415)
T PRK09664 159 KIISFVIVFGSFFFQVDYSILRDATST---TA-G-TSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDKL--IK 228 (415)
T ss_pred HHHHHHHHHHHHhhcccHHHHhcCccc---cc-c-chHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHHH--HH
Confidence 222222111111111100000000000 00 0 11133577899999999999999999999993 333333 48
Q ss_pred hhHHHHHHHHHHHHH--HHhHHh---------hhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhc
Q 009363 349 GVKFAYLIIATCLFP--IAIGGY---------WAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYG 417 (536)
Q Consensus 349 ~v~~a~~i~~~~Y~~--~gi~GY---------~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~ 417 (536)
.+..+..+..++|++ .++.|- ...|+++. .++..+. +.....++..+..++-.+++.+||--..
T Consensus 229 aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~--~l~~s~~---~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~ 303 (415)
T PRK09664 229 SVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVD--SLVKSFL---GTKQHGIIEFCLLVFSNLAVASSFFGVT 303 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCch--HHHHHHH---hhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888865 343342 22333322 2222221 1123456777888999999999999999
Q ss_pred cchHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhHhhhHhHhhHHhhHhhcCC-CCCc
Q 009363 418 MPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPF-LGSLAGLIGGIALPVTLAYPCFMWLKVKKP-KAYG 495 (536)
Q Consensus 418 ~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~-~~~v~~lvGa~~~~l~filP~l~~l~~~~~-~~~~ 495 (536)
..++|.+.+.+..++++ ..|.....+.++..+++|.+.|+ |-..++..|..+..+..++|++|-+|.||+ ....
T Consensus 304 LGL~D~l~D~~~~~~~~----~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~~~~ 379 (415)
T PRK09664 304 LGLFDYLADLFKIDNSH----GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQM 379 (415)
T ss_pred HHHHHHHHHHhCCCCcc----ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 99999999977543322 34555556778899999999998 888999999864488899999999999976 2211
Q ss_pred ----hhHHHHHHHHHHHHHHHH
Q 009363 496 ----PIWWLNWVLGVLGIILSV 513 (536)
Q Consensus 496 ----~~~~~~~~li~~G~v~~v 513 (536)
-.+..-++.+.+|++..+
T Consensus 380 y~v~GG~~~l~~~~~~g~~ii~ 401 (415)
T PRK09664 380 FTVWGGNLIPAIVILFGITVIL 401 (415)
T ss_pred ceeeCCHHHHHHHHHHHHHHHH
Confidence 123344455555555443
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.92 E-value=4.7e-23 Score=214.46 Aligned_cols=372 Identities=16% Similarity=0.107 Sum_probs=257.2
Q ss_pred CChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhh
Q 009363 112 GNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKL 191 (536)
Q Consensus 112 ~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~ 191 (536)
++...+++.+..+.||+|+|+||.+.+..|..++++++++++.+..|+.+++.|+..+ . ++..++.+++++.+||++
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~-~--~~~~~~~~~a~~~LG~~g 79 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH-V--PADTGLGTLAKRYLGRYG 79 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C--CCCCCHHHHHHHHhChHH
Confidence 4778999999999999999999999999999999999999999999999999996544 2 335789999999999975
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHHH
Q 009363 192 AKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAIT 271 (536)
Q Consensus 192 g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~~ 271 (536)
++ +..+.+....+..+++|..-+|+.+.+.++.+.+. .++...+.++|..+....... ..+...+++-+=+..
T Consensus 80 ~~-i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-----~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~ 152 (403)
T PRK15132 80 QW-LTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-----SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSA 152 (403)
T ss_pred HH-HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-----CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence 55 44555677779999999999999999988765432 223445555555543322222 223444433332221
Q ss_pred HH-HHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhh
Q 009363 272 AV-GYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGV 350 (536)
Q Consensus 272 ~v-~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v 350 (536)
.+ .++..+.+ .+ ++.+.+...... . +...+..++|++++||+.|+++|++.+.+ ++ +.++.+|++
T Consensus 153 ~ii~~~~~~~~-l~-----p~~~~~~L~~~~--~-~~~~~~~~iPvl~~SFgfh~iIpsl~~y~----~~-~~~~~~k~i 218 (403)
T PRK15132 153 KIIFLVVMLAL-MM-----PHIHKVNLLTLP--L-QQGLALSAIPVIFTSFGFHGSVPSIVSYM----GG-NIRKLRWVF 218 (403)
T ss_pred HHHHHHHHHHH-HH-----HhcCHHHHhcCC--c-cccHHHHHHHHHHHHhhCCcccHHHHHHh----Cc-CHHHHHHHH
Confidence 11 11111111 11 111111000000 0 01147899999999999999999999999 32 234456999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhcCCC-----CCc----chhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchH
Q 009363 351 KFAYLIIATCLFPIAIGGYWAYGQL-----IPS----GGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMF 421 (536)
Q Consensus 351 ~~a~~i~~~~Y~~~gi~GY~~fG~~-----~~~----~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~ 421 (536)
..+..+..++|+..=......-+.+ .++ +++++.+.+. ....+...++.++-.+++.+||--....++
T Consensus 219 ~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~ 295 (403)
T PRK15132 219 IIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREV---VASPHVELAVHLFADLALATSFLGVALGLF 295 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHH---ccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987444433333322 111 1445555332 234567778899999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhHhhhHhHhhHHhhHhhcCCC---CCch-
Q 009363 422 DDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPF-LGSLAGLIGGIALPVTLAYPCFMWLKVKKPK---AYGP- 496 (536)
Q Consensus 422 ~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~-~~~v~~lvGa~~~~l~filP~l~~l~~~~~~---~~~~- 496 (536)
|.+.+.+.+++++ ..|.....+.++.++++|+..|+ |...+++.|.....+.+++|+++.+|.|+++ +++.
T Consensus 296 d~l~d~~~~~~~~----~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~~~~y~v~ 371 (403)
T PRK15132 296 DYLADLFQRRNTV----GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNPQAGYRVK 371 (403)
T ss_pred HHHHHHHccCccc----cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCC
Confidence 9999977543221 33666667888999999999998 8889999887544999999999999998755 2221
Q ss_pred -hHHHHHHHHHHHHHHHHH
Q 009363 497 -IWWLNWVLGVLGIILSVL 514 (536)
Q Consensus 497 -~~~~~~~li~~G~v~~v~ 514 (536)
.+..+++.+++|++..+.
T Consensus 372 gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 372 GGRPALALVFLCGIAVIGI 390 (403)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 345566777777666543
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.90 E-value=3.9e-22 Score=208.97 Aligned_cols=347 Identities=16% Similarity=0.087 Sum_probs=246.0
Q ss_pred HHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHHHH
Q 009363 117 AAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLA 196 (536)
Q Consensus 117 a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~~ 196 (536)
+++.++++++|+|++++|.++++.|+.++.+.+++.++++.++.+++.|+..+ .+ +..+|.++++++|||+++.+..
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~-~p--~~~~~~~~~~~~~G~~~g~~~~ 78 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLT-YP--GGASFNTIAKDLLGKTGNIIAG 78 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC--CCCCHHHHHHHHhCHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999998766 33 3569999999999997777766
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHH
Q 009363 197 FLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYC 276 (536)
Q Consensus 197 ~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~~~v~~~ 276 (536)
.. ....++..+++|.+..++.+..+++..... .+....+.+++..++..+. .+..+..++++.+.+...+...
T Consensus 79 ~~-~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l 151 (381)
T TIGR00837 79 LS-LLFVLYILTYAYISGGGSILSRLIGEYFGF-----PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAF 151 (381)
T ss_pred HH-HHHHHHHHHHHHHHccHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHH
Confidence 55 455558999999999999999988754321 1223333333333333333 4566777777777665544333
Q ss_pred HHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhhHHHHHH
Q 009363 277 TIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLI 356 (536)
Q Consensus 277 ~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i 356 (536)
.++++....+.+.++ ..+. .. . ...+.++..++++..++|.+|.+++.+.+++ +++ ++++.|++..+..+
T Consensus 152 ~~~ii~~~~~~~~~~--~~~~-~~-~-~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i 221 (381)
T TIGR00837 152 ALVFSGLLPHVKGDL--LLDV-AL-D-TSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAI 221 (381)
T ss_pred HHHHHHHHhhccHHH--HhcC-cc-c-cccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHH
Confidence 332222222211111 1111 00 0 1235578899999999999999999999999 655 56667999999999
Q ss_pred HHHHHHHHHhHHhhhcCCCCCc---------chhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHH
Q 009363 357 IATCLFPIAIGGYWAYGQLIPS---------GGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESL 427 (536)
Q Consensus 357 ~~~~Y~~~gi~GY~~fG~~~~~---------~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~le~~ 427 (536)
+.++|+++........+.+.-. ++..+.+.+ .....+...+..++-.++++.|+.-.....+|.+.+.
T Consensus 222 ~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~ 298 (381)
T TIGR00837 222 ALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQG---VLKSSAIELALELFSNFALASSFLGVTLGLFDYLADL 298 (381)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998866655554432110 011222211 0123355677888889999999999999999999887
Q ss_pred hhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchH-HHHHHHhhhHh-hhHhHhhHHhhHhhcCC
Q 009363 428 YVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLG-SLAGLIGGIAL-PVTLAYPCFMWLKVKKP 491 (536)
Q Consensus 428 ~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~-~v~~lvGa~~~-~l~filP~l~~l~~~~~ 491 (536)
+.+++++ .+|.....+..+...++|.+.|+.. ..++..| +.+ .+.+++|++++++.||+
T Consensus 299 ~~~~~~~----~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 299 FKFDDSK----KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hCCCccc----CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 7543222 2355566777788999999999855 8899999 777 99999999999998875
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.86 E-value=7.7e-19 Score=182.20 Aligned_cols=387 Identities=13% Similarity=0.092 Sum_probs=249.0
Q ss_pred HHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHHHHH
Q 009363 118 AFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAF 197 (536)
Q Consensus 118 ~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~~~ 197 (536)
.+.+.++.+|+|+|+||......|..+.++++++++.+++|+...|.|.... ..++..+|.+++++.||++++.+...
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~--~~~~~~~i~~v~~~~lG~~g~~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLS--GSNPSGNITETVEEHFGKTGGVVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCCCCCHHHHHHHHcChhHHHHHHH
Confidence 3888999999999999999999999999999999999999999999997554 21346799999999999988877766
Q ss_pred HHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHH---HHHH
Q 009363 198 LPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAI---TAVG 274 (536)
Q Consensus 198 ~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~---~~v~ 274 (536)
. +++..+..+.+|...+.+.+.+.+.+..+. ....+....++++++....... .-+.+-+++-+=+. .++.
T Consensus 103 l-Yff~ly~ll~aY~~~itn~l~sfl~~ql~~----~~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~ 176 (443)
T PRK13629 103 L-YFFAICPLLWIYGVTITNTFMTFWENQLGF----APLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLV 176 (443)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----CCccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHH
Confidence 6 455559999999988888887766554321 1233333334444433332222 22444444333222 2221
Q ss_pred HHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCC---CCC--ccCcchh
Q 009363 275 YCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEK---HPS--TVPMWKG 349 (536)
Q Consensus 275 ~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k---~ps--~~~~~~~ 349 (536)
...+..+-...-....+.+.+....... .........++|+++|||..|+++|++...+++.-+ +++ +++.+|+
T Consensus 177 ~l~~~LiP~w~~~~L~~~~~~~~~~~~~-~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ri 255 (443)
T PRK13629 177 LISLSLIPYWNSAVIDQVDLGSLSLTGH-DGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQI 255 (443)
T ss_pred HHHHHHHHHcCHHHHhcCcccccccccc-ccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHH
Confidence 1111111100000000000000000000 111235788999999999999999999999532201 223 5677789
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhcCCCC------CcchhhHHHhhhcCC-Cch-----HHHHHHHHHHHHHHHHHhhhhhc
Q 009363 350 VKFAYLIIATCLFPIAIGGYWAYGQLI------PSGGMLVALIAFHAT-DTS-----RFILGLTSLFVIISAVSSFQIYG 417 (536)
Q Consensus 350 v~~a~~i~~~~Y~~~gi~GY~~fG~~~------~~~~Il~~l~~~~~~-~~~-----~~~~~i~~l~~~i~ll~s~pl~~ 417 (536)
+..+..+..++|+..-+..-.+-+++. ++.++++.+.+..+. ... .++..+..++-.+++.+||--..
T Consensus 256 i~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~ 335 (443)
T PRK13629 256 ISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHY 335 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886666555554332 223555555432211 111 34667778888889999999999
Q ss_pred cchHHHHHHHhhh---cC-CCC-CCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCC
Q 009363 418 MPMFDDLESLYVR---RK-KKP-CPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKP 491 (536)
Q Consensus 418 ~p~~~~le~~~~~---~~-~~~-~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~ 491 (536)
..++|.++....+ +. .++ ..+..+.....+.++.++.+|+.-|++-.+++-+|+--. .+.|++|...-.|.-.-
T Consensus 336 LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l 415 (443)
T PRK13629 336 LGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSL 415 (443)
T ss_pred HHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHH
Confidence 9999999987632 11 111 223445666677888899999999998888886655555 88999999877766433
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 009363 492 KAYGPIWWLNWVLGVLGIILSVL 514 (536)
Q Consensus 492 ~~~~~~~~~~~~li~~G~v~~v~ 514 (536)
++++.+ ..|+++.+.|++....
T Consensus 416 ~~yr~~-~~n~fv~~~Gl~~i~~ 437 (443)
T PRK13629 416 AKYRGR-LDNVFVTVIGLLTILN 437 (443)
T ss_pred HHhCCC-chhHHHHHHHHHHHHH
Confidence 333222 3578888888765533
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.80 E-value=6.2e-18 Score=176.54 Aligned_cols=376 Identities=12% Similarity=0.062 Sum_probs=242.9
Q ss_pred HHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHHHH
Q 009363 117 AAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLA 196 (536)
Q Consensus 117 a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~~ 196 (536)
=.+.+.++++|+|+|++|...++.||+..++..+++..+++++..++.|.... ...+..++.|++++.|||++|++..
T Consensus 8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~--~~~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLS--SKNPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHcCHHHHHHHH
Confidence 36788899999999999999999999988888888999999999999997433 1123579999999999999999888
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHH
Q 009363 197 FLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYC 276 (536)
Q Consensus 197 ~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~~~v~~~ 276 (536)
....+. .+..+.+|....++.+.+.+...... + ...+.+..+...+++........+.+..++.+-+...+...
T Consensus 86 ~lY~~~-~~~i~~aY~~~~~~~~~~fl~~~~~~----~-~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l 159 (397)
T TIGR00814 86 LLYFFA-IYPILLIYSVAITNDSASFLVNQLGT----A-PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLIL 159 (397)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC----C-CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 875444 48889999999999998888764321 1 11221222222222222334466667766665553332222
Q ss_pred HHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCC--ccCcchhhHHHH
Q 009363 277 TIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPS--TVPMWKGVKFAY 354 (536)
Q Consensus 277 ~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps--~~~~~~~v~~a~ 354 (536)
.++....+.+-+.+..... +.. ...+.++..++++.++||.+|.+++++..+.+..-++|+ +++.+|+...+.
T Consensus 160 ~~l~~~lip~~~~~~L~~~--p~~---~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~ 234 (397)
T TIGR00814 160 VLLSLYLIPHWNGANLTTF--PSF---NGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGAS 234 (397)
T ss_pred HHHHHHHHHHcCHHHHhcC--Ccc---cchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 2222222211111111101 001 123568999999999999999999999833311113233 556668999999
Q ss_pred HHHHHHHHHHHhHHhhhcCCCCC-----c-chhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHh
Q 009363 355 LIIATCLFPIAIGGYWAYGQLIP-----S-GGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLY 428 (536)
Q Consensus 355 ~i~~~~Y~~~gi~GY~~fG~~~~-----~-~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~le~~~ 428 (536)
.+.+++|+..-.......+++.- + -+++..+.+. .+..+...+..++-.+++.+||--....++|.+++.+
T Consensus 235 ~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~---~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 235 LILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANH---FNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhh---cCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999998876666555554321 1 1233333221 1233566677788888999999999999999999977
Q ss_pred hhc-C--CCC-CCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCCCCCchhHHHHHH
Q 009363 429 VRR-K--KKP-CPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKPKAYGPIWWLNWV 503 (536)
Q Consensus 429 ~~~-~--~~~-~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~~~~~~~~~~~~~ 503 (536)
.+. + +++ .++..+.....+.++.++.+|+.-|++-.+++-+|+--. .+.|++|...-.|.-.-++++.+ ..|++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~-~~~~f 390 (397)
T TIGR00814 312 LNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR-ISNVF 390 (397)
T ss_pred HHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC-cchhe
Confidence 311 1 111 123344556667778889999999998888775555555 88999999877666432332222 23666
Q ss_pred HHHHHH
Q 009363 504 LGVLGI 509 (536)
Q Consensus 504 li~~G~ 509 (536)
+.+.|+
T Consensus 391 v~~~g~ 396 (397)
T TIGR00814 391 VTVIGL 396 (397)
T ss_pred eEeeec
Confidence 555553
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.40 E-value=1.7e-09 Score=115.67 Aligned_cols=241 Identities=11% Similarity=-0.006 Sum_probs=139.2
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
++|+-+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|...+ .+. .-..-.-+++.+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~--~GG~y~y~~~~~ 79 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRK--SGGMGGYAEYAF 79 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCC--CCchHHHHHHHc
Confidence 45678999999999999999999999999988887 46777888888888777777886544 221 223344567889
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHH-hhccCCCcchhhHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAV-VLSQLPNLNSIAGVSL 266 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l-~L~~l~~l~~l~~~S~ 266 (536)
||+.+.+......+.. ...+.++.+...+.+..++... . .. ...+.+...++.+ .+.-.+..+..+.++.
T Consensus 80 G~~~gf~~gw~~~~~~-~~~~~~~a~~~~~y~~~~~~~~----~--~~--~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~ 150 (438)
T PRK10655 80 GKSGNFMANYTYGVSL-LIANVAIAISAVGYGTELFGAT----L--SP--VQICLATIGVLWLCTVANFGGARITGQISS 150 (438)
T ss_pred CcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccc----c--ch--HHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9988877766543332 2222333233333333332210 0 10 1112221111111 1112334444444444
Q ss_pred HHHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCc
Q 009363 267 VGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPM 346 (536)
Q Consensus 267 i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~ 346 (536)
+..+..+.-.+++.+.......+++.+ ....+.. ...+.++..++....|+|.|-..+..+-+|+ |||+| ++
T Consensus 151 i~~~~~l~~l~~~~i~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~i 222 (438)
T PRK10655 151 VTVWGVIIPVVGLSIIGWFWFSPSLYV-AAWNPHH--LPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NV 222 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccc-CCcCccC--CchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cc
Confidence 433322211111111111111111110 0010110 1223567788889999999999999999999 88865 45
Q ss_pred chhhHHHHHHHHHHHHHHHhHHh
Q 009363 347 WKGVKFAYLIIATCLFPIAIGGY 369 (536)
Q Consensus 347 ~~~v~~a~~i~~~~Y~~~gi~GY 369 (536)
.|++..+..++.++|++......
T Consensus 223 PrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 223 PIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999988665443
No 17
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.36 E-value=8.4e-10 Score=119.11 Aligned_cols=247 Identities=12% Similarity=0.029 Sum_probs=143.1
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhhhhhhhchH-HHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWA-WGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~-~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
++|+-+.+++++..+++++|+|++.+|....+.|-. ..++..++.+++.........|...+ .+++ .-..-+.+++.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~-~P~~-sGG~y~y~~~~ 82 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATK-KPEL-DGGIYAYAREG 82 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCC-CCChhhhHHhH
Confidence 356789999999999999999999999997765532 23455667777777777777776554 2220 11233356889
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHH-HHhhccCCCcchhhHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCA-AVVLSQLPNLNSIAGVS 265 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~l~L~~l~~l~~l~~~S 265 (536)
+||+.+........+.. .....++.....+.+..+++....+ .. ...+......+ ...+.-.+.++..+.++
T Consensus 83 ~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~~~----~~--~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~ 155 (473)
T TIGR00905 83 FGPYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGYFFPLFGSG----NP--VPSILGASVLLWVFTFLVLRGVRQAAFIN 155 (473)
T ss_pred cccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCC----Cc--HHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99988888777653333 2334455555555555554421100 10 11121111111 11122345666666666
Q ss_pred HHHHHHHHHHHHHhhhhee--eccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCc
Q 009363 266 LVGAITAVGYCTIIWVVSV--AKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPST 343 (536)
Q Consensus 266 ~i~~~~~v~~~~ii~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~ 343 (536)
.+..+..+...+++++..+ .++.....++.+...... ...+..+..++....|+|.|-.....+-+|+ || +
T Consensus 156 ~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~--~ 228 (473)
T TIGR00905 156 TITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSL-GSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN--K 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcc-cchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc--c
Confidence 6555432221111111111 111110011110000000 1235578888999999999999999999999 77 4
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhHHhh
Q 009363 344 VPMWKGVKFAYLIIATCLFPIAIGGYW 370 (536)
Q Consensus 344 ~~~~~~v~~a~~i~~~~Y~~~gi~GY~ 370 (536)
|+..|++..+..++.++|++.......
T Consensus 229 r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 229 SDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566799999999999999887665433
No 18
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.34 E-value=4.1e-10 Score=117.16 Aligned_cols=338 Identities=14% Similarity=0.146 Sum_probs=191.4
Q ss_pred CCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchh
Q 009363 111 NGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEK 190 (536)
Q Consensus 111 ~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~ 190 (536)
+-|.+|..+.++++++|+|++.+|...++.+--.+.+..++.++......+++.+..++ .++ .+..+..++++||.
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~-~p~---~~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSK-FPE---KNFSEILSKYLGKI 77 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHH-CCC---CCHHHHHHHHhhHH
Confidence 46788999999999999999999998776544456677788888888888888888776 333 47889999999999
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHH-HHHhhccCCCcchhhHHHHHHH
Q 009363 191 LAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTC-AAVVLSQLPNLNSIAGVSLVGA 269 (536)
Q Consensus 191 ~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~l~L~~l~~l~~l~~~S~i~~ 269 (536)
.|+.+......+. +..+.......++.+.... ..+ +..|.+.... +.......+.++..+.++.+-.
T Consensus 78 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---l~~--------tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~ 145 (359)
T TIGR00912 78 LGRLLSILFILYF-FLIAAYLIRIFADFIKTYL---LPR--------TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILL 145 (359)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh---cCC--------CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9998877644333 3333333333333333211 111 2233322222 2222333467777777777665
Q ss_pred HHHHHH-HHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHH-HHHHHHhcCCchHHHHHhhCCCCCCCCCccCcc
Q 009363 270 ITAVGY-CTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNAL-GIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMW 347 (536)
Q Consensus 270 ~~~v~~-~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~ 347 (536)
...+.. ..++......+. +++...+.. ..++.+...+. ....++|.+...+.-...++ |+|++ ..
T Consensus 146 ~~~i~~~~~il~~~~~~~~-----~~~~l~P~~--~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~ 212 (359)
T TIGR00912 146 IIFLILFILVLILLAPKLG-----NIKNLLPVL--ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IK 212 (359)
T ss_pred HHHHHHHHHHHHHHhcccc-----cHHHccCcc--ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hH
Confidence 443332 122222222111 111111111 11234444444 47889998888888888888 66544 45
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhcCCCCCc---chhhHHHhhhcCCCchHHH---HHHHHHHHHHHHHHhhhhhccchH
Q 009363 348 KGVKFAYLIIATCLFPIAIGGYWAYGQLIPS---GGMLVALIAFHATDTSRFI---LGLTSLFVIISAVSSFQIYGMPMF 421 (536)
Q Consensus 348 ~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~---~~Il~~l~~~~~~~~~~~~---~~i~~l~~~i~ll~s~pl~~~p~~ 421 (536)
|+...+..++.++|...-+.....+|.+..+ -+.++..... +.++.. ..+.-..-........-++.+...
T Consensus 213 k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i---~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~ 289 (359)
T TIGR00912 213 KSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLI---NIGDFIERFELIVMTFWVFIIFVKIAFYLYIAV 289 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877777777753322 0111111100 111111 122223344555666666777777
Q ss_pred HHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccc-hHHH---HHHHhhhHh-hhHhHhhHHhhHhhcC
Q 009363 422 DDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPF-LGSL---AGLIGGIAL-PVTLAYPCFMWLKVKK 490 (536)
Q Consensus 422 ~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~-~~~v---~~lvGa~~~-~l~filP~l~~l~~~~ 490 (536)
..+++.+..++.+ ....-... +.+.++ ..|+ .... .+..+ ..+ .+.+++|.++++...-
T Consensus 290 ~~~~~~~~~~~~~------~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~i 353 (359)
T TIGR00912 290 KGLSKLFKKRKYS------ILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKI 353 (359)
T ss_pred HHHHHHhCCCCcc------hhHHHHHH--HHHHHH-HccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 7788766544322 11211111 223333 3454 3322 22222 334 6778899987766543
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.32 E-value=4.3e-09 Score=113.49 Aligned_cols=246 Identities=13% Similarity=0.031 Sum_probs=137.9
Q ss_pred CCCChhHHHHHHhhhcccccccchhhhhh-hhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCC--ccccHHHHHHhh
Q 009363 110 RNGNAYYAAFHTLCAGIGIQALVLPVAFP-ILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGM--RYSRYLQLCGVT 186 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG~GiLaLP~af~-~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~--~~~sY~~l~~~~ 186 (536)
|+-+.++.+...++++||+|++.+|.... ..|....++..++.++........+.|...+ .|+. ....| +++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~-~P~~gGG~y~y---~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANK-KPELDGGVYSY---AKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCChhhh---HHhH
Confidence 45688999999999999999999988755 4453334555677777777777777786655 2321 23444 8889
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHH-HHhhccCCCcchhhHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCA-AVVLSQLPNLNSIAGVS 265 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~l~L~~l~~l~~l~~~S 265 (536)
||+..|........+....+ ..+|.....+.+..+++... ...+...+......+ .+-....+..+..+.++
T Consensus 77 fG~~~gf~~gw~~w~~~~~~-~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~ 149 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLG-NVAYATLLFSTLGYFFPIFG------GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFIN 149 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccc------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99988887776643332222 34444444444433322111 000111122111111 11122235666666665
Q ss_pred HHHHHHHHHHHHHhhh--heeeccCCCCcc-cCCCC-CCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCC
Q 009363 266 LVGAITAVGYCTIIWV--VSVAKGRLPGVS-YNPVQ-TDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHP 341 (536)
Q Consensus 266 ~i~~~~~v~~~~ii~~--~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~p 341 (536)
.+..+..+...+++++ ....++.....+ ++... .... ...+.++..++....|+|.|-.....+-+|. |+
T Consensus 150 ~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~- 223 (468)
T TIGR03810 150 TITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSL-GSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK- 223 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCcc-ccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC-
Confidence 5544332211111111 111121110000 11000 0000 1224467788899999999999988888888 65
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHhHHhhhcC
Q 009363 342 STVPMWKGVKFAYLIIATCLFPIAIGGYWAYG 373 (536)
Q Consensus 342 s~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG 373 (536)
++.+.|++..+..++.++|.++.+..+...+
T Consensus 224 -~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 224 -RSDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3556699999999999999998776554443
No 20
>PRK11021 putative transporter; Provisional
Probab=99.31 E-value=1.5e-08 Score=107.47 Aligned_cols=228 Identities=14% Similarity=0.187 Sum_probs=134.7
Q ss_pred ChhHHHHHHhhhcccccccchhhhhhh-hchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhh
Q 009363 113 NAYYAAFHTLCAGIGIQALVLPVAFPI-LGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKL 191 (536)
Q Consensus 113 s~~~a~~~li~s~iG~GiLaLP~af~~-~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~ 191 (536)
+.+++....+++++|+|++.+|-...+ .|- ..++..++.++........+.|...+ .++ .-....-+++.||+++
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~-~P~--aGG~y~y~~~~~G~~~ 77 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRH-FPH--AGGPAHFVGMAFGPRL 77 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CCCHHHhHHHHhCchh
Confidence 578899999999999999999976544 453 46777777788887778888887655 232 2244456778899998
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHH-HHHhhccCCCcchhhHHHHHHHH
Q 009363 192 AKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTC-AAVVLSQLPNLNSIAGVSLVGAI 270 (536)
Q Consensus 192 g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~l~L~~l~~l~~l~~~S~i~~~ 270 (536)
+.............+ ..+........+..++. . ..+ ..+.+.... +.+-+.-.+..+..++++.+..+
T Consensus 78 gf~~gw~~~~~~~~~-~~~~~~~~~~~~~~~~~----~----~~~--~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~ 146 (410)
T PRK11021 78 GRVTGWLFLSVIPVG-LPAALQIAAGFGQALFG----W----SSW--QLLLAELLTLALLWLLNLRGASSSANLQTVIAL 146 (410)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHcC----C----CCc--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888777654332222 22222223333332221 1 111 112211111 11112224555555555544332
Q ss_pred HHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhh
Q 009363 271 TAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGV 350 (536)
Q Consensus 271 ~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v 350 (536)
..+..+...+. .+.....++. ..... ..++.++..++....|+|.|...+...-+|+ |||+| ++.|++
T Consensus 147 ~~~~i~~~~~~----~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi 214 (410)
T PRK11021 147 LIVALVVAIWW----AGDIKPADIP-FPAPG--SIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRAL 214 (410)
T ss_pred HHHHHHHHHHH----HcCCchhcCC-CCCCC--CccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHH
Confidence 22211111111 1111111111 11111 2346788999999999999999999999999 88865 456999
Q ss_pred HHHHHHHHHHHHHHHhH
Q 009363 351 KFAYLIIATCLFPIAIG 367 (536)
Q Consensus 351 ~~a~~i~~~~Y~~~gi~ 367 (536)
..+..++.++|++..+.
T Consensus 215 ~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 215 MIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=99.30 E-value=1.2e-09 Score=116.38 Aligned_cols=243 Identities=15% Similarity=0.068 Sum_probs=146.9
Q ss_pred cCCCChhHHHHHHhhhcccccccchhhhhhh-hchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQALVLPVAFPI-LGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~GiLaLP~af~~-~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
+|+-+.++.++..+++++|+|++.+|..... .|. ...+..++.+++.......+.|...+ .++ .-..-+-.++.+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~-~p~--~Gg~y~~~~~~~ 77 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAM-LPV--AGSPYTYAYEAM 77 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhh-cCC--CCcceeeHHHHh
Confidence 4678999999999999999999999966543 444 34556666777777777777776554 222 123334466789
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCC---CCCCCCCCchh--hH-HHHHHHHHhhccCCCcchh
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGA---TCTSQPLTTVE--WY-LVFTCAAVVLSQLPNLNSI 261 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~---~~~~~~~~~~~--~~-~i~~~~~l~L~~l~~l~~l 261 (536)
||+.|........+.. ...+..+....++.+..++.....+ .+....+.... +. +++..++. +...+..+..
T Consensus 78 G~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~~g~~~~ 155 (429)
T TIGR00909 78 GELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLT-YILYLGAKES 155 (429)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHH-HHHHhCcHHH
Confidence 9998888887754443 4445566666677777666531100 00000000001 11 11212121 2224566777
Q ss_pred hHHHHHHHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCC
Q 009363 262 AGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHP 341 (536)
Q Consensus 262 ~~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~p 341 (536)
++++.+.....+...+++++....+.... ++++.. ...+.++..++...+|+|.|...+....+|+ |||
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p 224 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHFASN--NYTPFM-----PMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNP 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhCcHH--hcCCCC-----CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCc
Confidence 77666665543332222222222221111 222111 1234578889999999999999999999999 888
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHhHHh
Q 009363 342 STVPMWKGVKFAYLIIATCLFPIAIGGY 369 (536)
Q Consensus 342 s~~~~~~~v~~a~~i~~~~Y~~~gi~GY 369 (536)
+| +..|++..+..++.++|++......
T Consensus 225 ~r-~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 225 ER-DIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred cc-cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 4569999999999999998765544
No 22
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.29 E-value=1.5e-08 Score=108.33 Aligned_cols=242 Identities=10% Similarity=0.084 Sum_probs=140.0
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
+++|+.+.++.+...+++++|+|++.+|...++.|-. .++..++.++........+.|...+ .|.. -..-+-+++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~-~P~~--GG~y~y~~~- 76 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATK-NPQQ--GGPIAYAGE- 76 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCC--CChhHHHHH-
Confidence 3567889999999999999999999999999988863 5666677777777777777776554 2221 122333456
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
+|++++............++ ..++.+...+.+..++... . ..+....+.+++.. .+-+...+..+..+.++.
T Consensus 77 ~g~~~gf~~gw~~~~~~~~~-~~~~~~~~~~y~~~~~p~~-~-----~~~~~~~~~~~i~~-~~~~ln~~gvk~~~~i~~ 148 (435)
T PRK10435 77 ISPAFGFQTGVLYYHANWIG-NLAIGITAVSYLSTFFPVL-N-----DPIPAGIACIAIVW-VFTFVNMLGGTWVSRLTT 148 (435)
T ss_pred HCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcccc-C-----ChHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Confidence 79888877766432222122 3334344444444433211 0 11111111111111 111222344455555554
Q ss_pred HHHHHHHHHHHHhhhheeeccCCCC--cccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCcc
Q 009363 267 VGAITAVGYCTIIWVVSVAKGRLPG--VSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTV 344 (536)
Q Consensus 267 i~~~~~v~~~~ii~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~ 344 (536)
+..+..+..++..++.......++. .++++ . . ...+.++..++....|+|.|-..+-..-+|+ |||+|
T Consensus 149 i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~---~-~-~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r- 218 (435)
T PRK10435 149 IGLVLVLIPVVGTAIVGWHWFDAATYAANWNT---S-D-TTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR- 218 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHhhcccccC---C-C-CchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-
Confidence 4443322211111111111111111 11111 0 0 2235688999999999999999999999999 88854
Q ss_pred CcchhhHHHHHHHHHHHHHHHhHHhhh
Q 009363 345 PMWKGVKFAYLIIATCLFPIAIGGYWA 371 (536)
Q Consensus 345 ~~~~~v~~a~~i~~~~Y~~~gi~GY~~ 371 (536)
.+.|++..+..++.++|++..+.....
T Consensus 219 ~iPrAi~~~~~iv~ilYil~~~~~~~~ 245 (435)
T PRK10435 219 TVPLATMLGTGLAGIIYIAATQVISGM 245 (435)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446999999999999999877664433
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.28 E-value=1.3e-08 Score=109.00 Aligned_cols=236 Identities=16% Similarity=0.142 Sum_probs=135.1
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh-hhcCCccccHHHHHHhh
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN-VETGMRYSRYLQLCGVT 186 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~-~~~g~~~~sY~~l~~~~ 186 (536)
++|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++........+.|.... |..| ....| +++.
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aG-G~y~~---~~~~ 80 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPG-GSYAY---ARRC 80 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ChhHH---HHHH
Confidence 456789999999999999999999999998887742 4555666666666666677776544 2222 13344 8888
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhc--cCCCcchhhHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLS--QLPNLNSIAGV 264 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~--~l~~l~~l~~~ 264 (536)
+|+.++.+......+....+ ..+......+.+..+.+.. . . .....++...+++.+. -.+..+..+.+
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~-----~---~~~~~~~~~~~~~~~~~ln~~gvk~~~~i 150 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIG-NIAMVVIGVGYLSYFFPIL-K-----D---PLVLTITCVVVLWIFVLLNIVGPKMITRV 150 (445)
T ss_pred cCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc-C-----C---cHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 99988877665543322122 2333323333333322211 0 0 1111111111111111 23445555555
Q ss_pred HHHHHHHHHHHHHHhhhhee--eccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCC
Q 009363 265 SLVGAITAVGYCTIIWVVSV--AKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPS 342 (536)
Q Consensus 265 S~i~~~~~v~~~~ii~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps 342 (536)
+.+..+..+..++++..... .++......++ ... ...+..+..++....|+|.|-..+...-+|+ |||+
T Consensus 151 ~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~ 221 (445)
T PRK10644 151 QAVATVLALIPIVGIAVFGWFWFRGETYMAAWN----VSG-LGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPK 221 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhccCCcc----ccc-cchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCcc
Confidence 55444332221111111111 11110000111 001 2234567778889999999999999999999 8886
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhHH
Q 009363 343 TVPMWKGVKFAYLIIATCLFPIAIGG 368 (536)
Q Consensus 343 ~~~~~~~v~~a~~i~~~~Y~~~gi~G 368 (536)
| ...|++..+..++.++|+++.+.-
T Consensus 222 r-~iPrai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 222 R-NVPIATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred c-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 5 456999999999999999877663
No 24
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.18 E-value=5.9e-08 Score=104.69 Aligned_cols=241 Identities=14% Similarity=0.102 Sum_probs=136.0
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPV-AFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~-af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
+.+|+.+.++.....++++||+|++..|. ++++.|. ..++..++++++......-+.|.... +.+..++.+.+++
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~---~~~~~~~~~ya~~ 92 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS---NLEYKSFSDFASD 92 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCcHHHHHHH
Confidence 45678899999999999999999999765 7888887 45666667777777666666665433 1223456778999
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHH
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVS 265 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S 265 (536)
.+|+..+........+.. .-...+.....+..+.... ++ .....+.+++..++..+. ....+..+.++
T Consensus 93 ~~g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~~~~----p~------~~~~~~~~~~~~~~~~iN-~~g~~~~~~i~ 160 (469)
T PRK11049 93 LLGPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQFWF----PD------LSDWVASLAVVLLLLSLN-LATVKMFGEME 160 (469)
T ss_pred HhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc----CC------CcHHHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence 999988888877754333 2222223333333333221 11 112222222222222222 23445555554
Q ss_pred HHHHHHHHHHHH--Hhhhhe-eecc--CCCCc--ccCCCCCCcc-ccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCC
Q 009363 266 LVGAITAVGYCT--IIWVVS-VAKG--RLPGV--SYNPVQTDKE-GIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSS 337 (536)
Q Consensus 266 ~i~~~~~v~~~~--ii~~~~-~~~g--~~~~~--~~~~~~~~~~-~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~ 337 (536)
.+..+.-+...+ ++.... ...+ .+.+. .++....... ....+.++..++....|+|.|-..+...-+|+
T Consensus 161 ~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~--- 237 (469)
T PRK11049 161 FWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET--- 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh---
Confidence 443322111111 111110 0011 11110 1110000000 01234578899999999999999999999999
Q ss_pred CCCCCccCcchhhHHHHHHHHHHHHHHHhHH
Q 009363 338 EKHPSTVPMWKGVKFAYLIIATCLFPIAIGG 368 (536)
Q Consensus 338 ~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~G 368 (536)
|||++ .+.|++..+.....++|.+....-
T Consensus 238 -knP~r-~iPrai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 238 -KDPEK-SLPRAINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred -cCHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88865 456888766777777887655544
No 25
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.17 E-value=4.7e-08 Score=104.96 Aligned_cols=241 Identities=11% Similarity=0.062 Sum_probs=143.0
Q ss_pred ccccCCCChhHHHHHHhhhcccccccchh-hhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHH
Q 009363 106 ITESRNGNAYYAAFHTLCAGIGIQALVLP-VAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCG 184 (536)
Q Consensus 106 ~~~~~~~s~~~a~~~li~s~iG~GiLaLP-~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~ 184 (536)
.+.+|+.+.++..+..++++||+|++.+| .+.++.|- .+++..++.+++.......+.|.... .+. .-.+.+.++
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~-~P~--~Gg~~~~~~ 83 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVA-NPD--TGSFSTYAD 83 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCHHHHHH
Confidence 34577889999999999999999999999 67888886 47778888888888888888887654 232 235567788
Q ss_pred hhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHH-hhccCCCcchhhH
Q 009363 185 VTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAV-VLSQLPNLNSIAG 263 (536)
Q Consensus 185 ~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l-~L~~l~~l~~l~~ 263 (536)
+.+|+.++........+.. ...+.+.....+..+..+.+ + ...|.....++.+ .+.-.+..+..+.
T Consensus 84 ~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~~----~--------~~~~~~~~~~~~~~~~~n~~gv~~~~~ 150 (452)
T TIGR01773 84 DAIGRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQYWFP----D--------IPLWLFSLILTIVLTLTNLYSVKSYGE 150 (452)
T ss_pred HHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC----c--------CcHHHHHHHHHHHHHHHHHHhcchhhH
Confidence 9999988888777654333 33344444444444443221 1 1133322222111 1112234444444
Q ss_pred HHHHHHHHHH----HHHHHhhhheeeccCCC-C-cccCCCCCCcc-ccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCC
Q 009363 264 VSLVGAITAV----GYCTIIWVVSVAKGRLP-G-VSYNPVQTDKE-GIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPS 336 (536)
Q Consensus 264 ~S~i~~~~~v----~~~~ii~~~~~~~g~~~-~-~~~~~~~~~~~-~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~ 336 (536)
+..+..+..+ .++++.++.. ..+.+. + ..++...+... ....+.++..++....|+|.|-..+..+-+|+
T Consensus 151 ~~~~~~~~ki~~l~~~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~-- 227 (452)
T TIGR01773 151 FEFWFALIKVIAIIAFIILGAVAI-FGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES-- 227 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh--
Confidence 4433332211 1111111111 111110 0 00110100000 01234578999999999999999999999999
Q ss_pred CCCCCCccCcchhhHHHHHHHHHHHHHHHhHHh
Q 009363 337 SEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGY 369 (536)
Q Consensus 337 ~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY 369 (536)
|||+| +..|++..+.....++|++......
T Consensus 228 --k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 228 --SNPIK-SITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred --cChhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 88865 4568888778888888887654433
No 26
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.16 E-value=9.4e-08 Score=102.43 Aligned_cols=239 Identities=10% Similarity=0.046 Sum_probs=134.7
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhh-hhhhchH-HHHHHHHHHHHHHHHHHHHHHHCchh-hhcCCccccHHHHH
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVA-FPILGWA-WGIIFLTLTFIWQLYTLYILVQLHEN-VETGMRYSRYLQLC 183 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~a-f~~~G~~-~giilli~~~~~s~~s~~lL~~~~~~-~~~g~~~~sY~~l~ 183 (536)
+.+|+-+.++.....++.++|+|++..|.. .+..|-. ..++..++.+++.........|.... |+.| ....| .
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G-G~y~y---~ 80 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG-ADYVY---L 80 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cceee---H
Confidence 346788999999999999999999999876 4445632 24555666677777777777776544 2222 24455 4
Q ss_pred HhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHH--HhhccCCCcchh
Q 009363 184 GVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAA--VVLSQLPNLNSI 261 (536)
Q Consensus 184 ~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~--l~L~~l~~l~~l 261 (536)
++.+|+.++........+.........+....++.+..... +....+..+...+. +-..-.+..+..
T Consensus 81 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~gv~~~ 149 (445)
T PRK11357 81 KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-----------IDPLLGKFIAAGLIIAFMLLHLRSVEGG 149 (445)
T ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------CchHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 57799988777666533222122233344444444332111 11111111111111 112223555555
Q ss_pred hHHHHHHHHHHHHHHHHhhhhe--eeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCC
Q 009363 262 AGVSLVGAITAVGYCTIIWVVS--VAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEK 339 (536)
Q Consensus 262 ~~~S~i~~~~~v~~~~ii~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k 339 (536)
+.++.+..+..+.-.+++++.. ..++........ ..... ...+.++..++....|+|.|-..+..+-+|+ |
T Consensus 150 ~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~--~~~~~-~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k 222 (445)
T PRK11357 150 AAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTT--TAIGA-TGSFMALLAGISATSWSYTGMASICYMTGEI----K 222 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCc--ccccc-cchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----c
Confidence 5555444432222111111111 112111000000 00011 2235578888999999999999999999999 8
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhHH
Q 009363 340 HPSTVPMWKGVKFAYLIIATCLFPIAIGG 368 (536)
Q Consensus 340 ~ps~~~~~~~v~~a~~i~~~~Y~~~gi~G 368 (536)
||+| .+.|++..+..++.++|++.....
T Consensus 223 ~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 223 NPGK-TMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred Cccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 8875 456999999999999998866543
No 27
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.16 E-value=1e-07 Score=104.63 Aligned_cols=363 Identities=13% Similarity=0.072 Sum_probs=188.5
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhhh--hhhchHHHHHHHHHHHHHHHHHHHHHHHCchh-hhcCCccccHHHHH
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVAF--PILGWAWGIIFLTLTFIWQLYTLYILVQLHEN-VETGMRYSRYLQLC 183 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~af--~~~G~~~giilli~~~~~s~~s~~lL~~~~~~-~~~g~~~~sY~~l~ 183 (536)
+.+|+-+.++.+..-++.++|+|+..+|-.. +..|-. .++..++.++.+........|...+ |..| ....| .
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG-g~Y~y---~ 99 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG-SAYLY---S 99 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cceee---H
Confidence 4577889999999999999999999998643 346754 4566777777777777777776544 2222 23455 4
Q ss_pred HhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCC------CCCCCCCCchh-hHHHHHHHHHhhccCC
Q 009363 184 GVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGA------TCTSQPLTTVE-WYLVFTCAAVVLSQLP 256 (536)
Q Consensus 184 ~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~------~~~~~~~~~~~-~~~i~~~~~l~L~~l~ 256 (536)
++.+|+.++.+......+....+ +.+.....++.+..++....+. ......+.... +..+...+++.+...+
T Consensus 100 ~~~~G~~~gfi~GW~~~l~~~~~-~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 100 YVTVGELWAFITGWNLILEYVIG-TAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence 55689988877777654433222 2233333444555444321110 00000011111 1111111111122346
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhhheeeccCCCCcccC---CCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhh
Q 009363 257 NLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYN---PVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQAT 333 (536)
Q Consensus 257 ~l~~l~~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~ 333 (536)
..+..++++.+..+..+...+++++.+..+....+.+.. ...+.. ...+.+++.+....+|+|.|-..+...-+|
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~--p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE 256 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFM--PYGFTGVLSGAATCFFAFIGFDAIATTGEE 256 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCC--CcchHHHHHHHHHHHHHHhhHHHHHHhHHh
Confidence 777777776665544333222222333222221111100 000111 123467889999999999999999999999
Q ss_pred CCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcC--CCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 009363 334 MPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYG--QLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVS 411 (536)
Q Consensus 334 m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG--~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~ 411 (536)
. |||++ .+.|++..+..++.++|.++.+.-...-+ +..++..+...+. .. ..++...+..+...+.++.
T Consensus 257 ~----knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~-~~---g~~~~~~ii~~~~~~~~~~ 327 (557)
T TIGR00906 257 V----KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFE-YV---GWGPAKYIVAVGALCGMST 327 (557)
T ss_pred c----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHH-Hc---CchHHHHHHHHHHHHHHHH
Confidence 9 88875 45699999999999999987655322222 1111112322221 11 1223444444545545444
Q ss_pred hhhhhccchHHHHHHH---------hhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHhhhHhHhhH
Q 009363 412 SFQIYGMPMFDDLESL---------YVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPC 482 (536)
Q Consensus 412 s~pl~~~p~~~~le~~---------~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~~l~filP~ 482 (536)
+.....+..-+.+... +.+. +++.....+.. .+..+++.+++... +++.+.++. +++..+.|++++
T Consensus 328 sl~~~~~~~sRil~amarDGlLP~~fakv-~~r~~tP~~Ai--l~~~iv~~il~~~~-~~~~l~~l~-sig~ll~y~lv~ 402 (557)
T TIGR00906 328 SLLGGMFPLPRVIYAMARDGLLFKWLAQI-NSKTKTPINAT--VVSGAIAALMAFLF-DLKALVDLL-SIGTLLAYSLVA 402 (557)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHhcc-CCCCCCcHHHH--HHHHHHHHHHHHHc-CHHHHHHHH-HHHHHHHHHHHH
Confidence 4433333332233221 1111 11111111211 22223333344333 455555543 233378899888
Q ss_pred HhhHhhcCC
Q 009363 483 FMWLKVKKP 491 (536)
Q Consensus 483 l~~l~~~~~ 491 (536)
+..+.+|++
T Consensus 403 ~~~l~lR~~ 411 (557)
T TIGR00906 403 ACVLILRYQ 411 (557)
T ss_pred HHHHHhhcc
Confidence 877777643
No 28
>PRK10249 phenylalanine transporter; Provisional
Probab=99.15 E-value=1.3e-07 Score=101.60 Aligned_cols=239 Identities=13% Similarity=0.058 Sum_probs=137.6
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhh-hhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVA-FPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~a-f~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
+-+|+.+.++..+..++.++|+|++..|-. .++.|- ..++..++.+++......-+.|...+ .+. .-.+.+.+++
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~-~P~--~Gg~~~y~~~ 93 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVE-EPV--SGSFAHFAYK 93 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CCCHHHHHHH
Confidence 345677889999999999999999998755 555565 46777888888888888888887655 232 2356667889
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHH
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVS 265 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S 265 (536)
.+|+.++........+.. .....+.....+..+..+ .+ ......+.+++..+...+ -.+..+..+.+.
T Consensus 94 ~~g~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~~----~~------~~~~~~~~~~~~~l~~~l-N~~gv~~~~~i~ 161 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQYW----FP------DVPTWIWAAAFFIIINAV-NLVNVRLYGETE 161 (458)
T ss_pred HhChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc----CC------cCcHHHHHHHHHHHHHHH-HHhcchhhhhHH
Confidence 999988888877643322 222223333233333221 11 111222222222222222 234444444443
Q ss_pred HHHHHH----HHHHHHHhhhheeeccCC-CCcccCC-CC-CCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCC
Q 009363 266 LVGAIT----AVGYCTIIWVVSVAKGRL-PGVSYNP-VQ-TDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSE 338 (536)
Q Consensus 266 ~i~~~~----~v~~~~ii~~~~~~~g~~-~~~~~~~-~~-~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~ 338 (536)
.+..+. .+.++++.+.. ...+.. +..+.+. .. .... ...+.++..++....|+|.|-..+...-+|+
T Consensus 162 ~~~~~ikv~~i~~~i~~~i~~-~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~---- 235 (458)
T PRK10249 162 FWFALIKVLAIIGMIGFGLWL-LFSGHGGEKASIDNLWRYGGFF-ATGWNGLILSLAVIMFSFGGLELIGITAAEA---- 235 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHcCCCCCCCChhhccCCCCCC-CCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----
Confidence 322211 11111111111 011111 1111110 00 0000 2345678899999999999999999999999
Q ss_pred CCCCccCcchhhHHHHHHHHHHHHHHHhHH
Q 009363 339 KHPSTVPMWKGVKFAYLIIATCLFPIAIGG 368 (536)
Q Consensus 339 k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~G 368 (536)
|+|++ ++.|++..+.....++|+.....-
T Consensus 236 ~~P~k-~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 236 RDPEK-SIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred cCHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88875 456899999988899997754443
No 29
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.14 E-value=1.8e-08 Score=107.28 Aligned_cols=286 Identities=12% Similarity=0.093 Sum_probs=155.6
Q ss_pred ChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHH-HHHHHHHHHCchhhhcCCccccHHHHHHhhcchhh
Q 009363 113 NAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQ-LYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKL 191 (536)
Q Consensus 113 s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s-~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~ 191 (536)
++++++...++.++|+|+...| ..+..|.. .++..++.+.+. ........|...+ .+ +.-....-.++++||++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p--~~GG~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YP--SAGGIYVWVSRAFGPFW 76 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TT--SSTTHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CcCeeeehhhhcccccc
Confidence 5788999999999999999999 77777765 555444444444 4555555665442 11 23355566788899999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHH-H-HHHhhccCCCcchhhHHHHHHH
Q 009363 192 AKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFT-C-AAVVLSQLPNLNSIAGVSLVGA 269 (536)
Q Consensus 192 g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~-~-~~l~L~~l~~l~~l~~~S~i~~ 269 (536)
+.+......+.. ...+.++.....+.+...+..... . +...+.++.. . +...+...+..|..++++.+..
T Consensus 77 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 148 (426)
T PF13520_consen 77 GFIVGWLYWVAY-ILSLASVASSFASYLLSLFGPDLN------P-SPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILT 148 (426)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTGGGT------C-SHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhcccceeEEEe-eccccccccchhhhhhhccccccc------c-ccchheeeeecccccceEeeechhhhhhhhhhhhh
Confidence 988877754443 444555555555555443321110 0 1111111111 1 1111223455666666655555
Q ss_pred HHHH-HHHHHhhhheeeccCCCCc-----ccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCc
Q 009363 270 ITAV-GYCTIIWVVSVAKGRLPGV-----SYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPST 343 (536)
Q Consensus 270 ~~~v-~~~~ii~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~ 343 (536)
+..+ ....++++..+.....++. +.+... ...+..++.++...+|+|.|-.......+|+ ||
T Consensus 149 ~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~--- 216 (426)
T PF13520_consen 149 VIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFF-----PSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN--- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSS-----CSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---
T ss_pred hhhhhhhhhhheeEEEeeecccccccccccccccC-----CccccchhhHHHHHHhhcccccccccccccc----cc---
Confidence 4333 2221222222222111111 011111 1122257888999999999999999999999 65
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCc--chh---hHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhcc
Q 009363 344 VPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPS--GGM---LVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGM 418 (536)
Q Consensus 344 ~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~--~~I---l~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~ 418 (536)
|+..|++..+..++.++|.+..+.-....+++..+ ++. ...+.+.- ...+...+..+...+..+.+......
T Consensus 217 k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~ 293 (426)
T PF13520_consen 217 KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAV---GGSWLAIIVSIAAILSLFGSINAFIF 293 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHH---HCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccc---cccccccccccccccccccccchhhc
Confidence 34569999999999999999876665555442211 121 21221111 11234444555555565655555544
Q ss_pred chHHHHHH
Q 009363 419 PMFDDLES 426 (536)
Q Consensus 419 p~~~~le~ 426 (536)
..-+.+..
T Consensus 294 ~~sR~l~~ 301 (426)
T PF13520_consen 294 GASRLLYA 301 (426)
T ss_dssp HHHHHHHH
T ss_pred chhhcccc
Confidence 44444444
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.14 E-value=1.9e-07 Score=107.69 Aligned_cols=249 Identities=13% Similarity=0.122 Sum_probs=150.2
Q ss_pred cccCCCChhHHHHHH-hhhcccccccc-hhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh--hhcCCccccHHHH
Q 009363 107 TESRNGNAYYAAFHT-LCAGIGIQALV-LPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN--VETGMRYSRYLQL 182 (536)
Q Consensus 107 ~~~~~~s~~~a~~~l-i~s~iG~GiLa-LP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~--~~~g~~~~sY~~l 182 (536)
.+.++-+++..++.- +.+++|+|+.. +++...++|...+++.++++++++..+..-+.+.... +..| -.| .+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG---G~Y-~y 148 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG---GAY-YL 148 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---HHH-HH
Confidence 345567888888777 99999999765 7788889998888899999999999999988886543 1222 233 33
Q ss_pred HHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCC-CchhhHHHHHHHHHhhccCCCcchh
Q 009363 183 CGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPL-TTVEWYLVFTCAAVVLSQLPNLNSI 261 (536)
Q Consensus 183 ~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~~l~L~~l~~l~~l 261 (536)
.+++||+.+|..+..+..+.. ...+..|.+..++.+..++........ .... ..+.+.+++.+++..+. ....+..
T Consensus 149 isralGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf~~~~~~~~-~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ 225 (953)
T TIGR00930 149 ISRSLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLLRENGSKIM-VDPINDIRIYGTVTVVVLLGIS-FAGMEWE 225 (953)
T ss_pred HHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccccc-cCccccchHHHHHHHHHHHHHH-HhhHHHH
Confidence 567899988888887755544 555677888888888777653211000 0111 12222222222222222 3344444
Q ss_pred hHHHHHHHHHHHHHHHHhhhheeeccC-CC--C---cccCCCCCCc-cccch-HHHHHHHHHHHHHHhcCCchHHHHHhh
Q 009363 262 AGVSLVGAITAVGYCTIIWVVSVAKGR-LP--G---VSYNPVQTDK-EGIVR-AVDVLNALGIVAFAFRGHNLSLEIQAT 333 (536)
Q Consensus 262 ~~~S~i~~~~~v~~~~ii~~~~~~~g~-~~--~---~~~~~~~~~~-~~~~~-~~~~~~~l~ii~faf~~h~~v~~i~~~ 333 (536)
+.++.+.+++.+..++.+++..+.... .. + .+.+.+..+. +.... ..++...++++++||.|......+-.|
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444433322222222222221110 00 0 0000000000 00111 123778889999999999999999999
Q ss_pred CCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhH
Q 009363 334 MPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIG 367 (536)
Q Consensus 334 m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~ 367 (536)
+ |+|++ .+.|++..++.+++++|+++.+.
T Consensus 306 l----KnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 306 L----KDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred c----cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 9 88875 45799999999999999998764
No 31
>PRK15049 L-asparagine permease; Provisional
Probab=99.12 E-value=1.3e-07 Score=102.57 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=132.2
Q ss_pred cCCCChhHHHHHHhhhcccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQALVLPV-AFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~GiLaLP~-af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
+|+.+.++..+..++.+||+|++..|. +++..|- .+++..++++++....+.-+.|.... .+. .-....-+++.+
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~-~P~--aGg~y~y~~~~~ 102 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLH-RPS--SGSFVSYAREFL 102 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CCCHHHHHHHHh
Confidence 566788999999999999999988876 6777775 46777788888888888888887654 222 235566678899
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
|++++..+.....+.. ...+..-....+..+. . .... .......+.+++..++..+ -.+..+....+..+
T Consensus 103 G~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~----~-~~~~---~~~~~~~~~~~~~~l~~~i-N~~gvk~~~~i~~~ 172 (499)
T PRK15049 103 GEKAAYVAGWMYFINW-AMTGIVDITAVALYMH----Y-WGAF---GGVPQWVFALAALTIVGTM-NMIGVKWFAEMEFW 172 (499)
T ss_pred CcHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----H-hccC---CCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9988877766643322 1111111112222221 1 1000 0111222222222222222 12334444444433
Q ss_pred HHHH----HHHHHHHhhhheeeccCCCCc---ccCCCCCC-ccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCC
Q 009363 268 GAIT----AVGYCTIIWVVSVAKGRLPGV---SYNPVQTD-KEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEK 339 (536)
Q Consensus 268 ~~~~----~v~~~~ii~~~~~~~g~~~~~---~~~~~~~~-~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k 339 (536)
..+. .+.+.++.+.. ...+.+.+. .......+ ......+.+++.++...+|+|.|-..+...-+|+ |
T Consensus 173 ~~~iki~~l~~~ii~~i~~-~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----k 247 (499)
T PRK15049 173 FALIKVLAIVTFLVVGTVF-LGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----K 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----c
Confidence 3211 11111111111 111111100 00000000 0001234456677788999999999999999999 8
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhHH
Q 009363 340 HPSTVPMWKGVKFAYLIIATCLFPIAIGG 368 (536)
Q Consensus 340 ~ps~~~~~~~v~~a~~i~~~~Y~~~gi~G 368 (536)
||++ .+.|++..++..+.++|+......
T Consensus 248 nP~r-~iPrAi~~~~~~i~~~yi~~~~~~ 275 (499)
T PRK15049 248 DPQT-MVPKAINSVIWRIGLFYVGSVVLL 275 (499)
T ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8865 456888888888888888755543
No 32
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.11 E-value=1.1e-08 Score=106.98 Aligned_cols=358 Identities=13% Similarity=0.134 Sum_probs=203.5
Q ss_pred ccccCCCChhHHHHHHhhhcccccccchhhhhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHCchh-hhcCCccccHHHH
Q 009363 106 ITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILG--WAWGIIFLTLTFIWQLYTLYILVQLHEN-VETGMRYSRYLQL 182 (536)
Q Consensus 106 ~~~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G--~~~giilli~~~~~s~~s~~lL~~~~~~-~~~g~~~~sY~~l 182 (536)
...+|+.+.+.+++.++++++|+|+...|....+.+ ...++++.+++++++......-.|.... +.+| -+|.=
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG---gd~ay- 83 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG---GDYAY- 83 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---cchhh-
Confidence 345678899999999999999999999999866554 3446677789999999999999997655 2233 23333
Q ss_pred HHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhh-hHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchh
Q 009363 183 CGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTS-MKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSI 261 (536)
Q Consensus 183 ~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l 261 (536)
..++||+.++........+...-..+..+-+..++. ++..+. .|... +.+.-..+.+++.+....|.-++
T Consensus 84 i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----~c~~p----~~~~~lla~~~l~~lt~~n~~~V 154 (479)
T KOG1287|consen 84 ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----LCDVP----RVASKLLAAALLVLLTLINSFSV 154 (479)
T ss_pred HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----CCCCc----hHHHHHHHHHHHHHHHHHhhhhh
Confidence 345788876655544443333233334455555554 444433 24221 12222222333333335566666
Q ss_pred hHHHHHHHHHH---HHHHHHhhhhee---eccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCC
Q 009363 262 AGVSLVGAITA---VGYCTIIWVVSV---AKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMP 335 (536)
Q Consensus 262 ~~~S~i~~~~~---v~~~~ii~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~ 335 (536)
++.+.+-.+.. +..+.++++.++ .+|..++.+.+..+ .+ ..+..++..++=.-.|||.|=+.+=-+.+|+
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~-g~--~~~~g~i~lafysglfa~~GWd~lN~vteEi- 230 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE-GS--DTDVGNIALAFYSGLFAFSGWDYLNYVTEEI- 230 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc-cC--cCchHHHHHHHHHhhhcccCchhhccchHhh-
Confidence 66555444332 222222222222 22332222222111 11 3345578889999999999999999999999
Q ss_pred CCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhc--CCCCCcchhh-HHHhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 009363 336 SSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAY--GQLIPSGGML-VALIAFHATDTSRFILGLTSLFVIISAVSS 412 (536)
Q Consensus 336 ~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~f--G~~~~~~~Il-~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s 412 (536)
|||.| .+.|+...++.+++++|+++-+..+.+- .+...+ |.. -.+.+ .-...+. .+.-+++.++.+.+
T Consensus 231 ---knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S-~aVav~Fa~---~~~G~~~-~~ip~~ValS~~G~ 301 (479)
T KOG1287|consen 231 ---KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSS-DAVAVTFAD---RILGVFA-WAIPFSVALSLIGS 301 (479)
T ss_pred ---cCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhccc-chHHHHHHH---HhccchH-HHHHHHHHHHhhhh
Confidence 88865 5679999999999999999766654433 222222 221 11100 0011111 23344444444444
Q ss_pred hhhhccchHHHHHHH---------hhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhH
Q 009363 413 FQIYGMPMFDDLESL---------YVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPC 482 (536)
Q Consensus 413 ~pl~~~p~~~~le~~---------~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~ 482 (536)
.--.++..-..+... +..++.++.+ =...+++..+..++..++.|+..+++.++=... ...+.+=+
T Consensus 302 ~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~T----P~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~g 377 (479)
T KOG1287|consen 302 LNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFT----PRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAG 377 (479)
T ss_pred hhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCC----ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333322222211 1111111111 112234444555555666689999998886666 77888889
Q ss_pred HhhHhhcCCCC
Q 009363 483 FMWLKVKKPKA 493 (536)
Q Consensus 483 l~~l~~~~~~~ 493 (536)
++|+|.++++.
T Consensus 378 ll~lR~k~p~~ 388 (479)
T KOG1287|consen 378 LLWLRWKHPPL 388 (479)
T ss_pred HHHHHhhCCCC
Confidence 99999988764
No 33
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.10 E-value=8.7e-08 Score=104.26 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=135.7
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhh-hhhhchH-HHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHH
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVA-FPILGWA-WGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCG 184 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~a-f~~~G~~-~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~ 184 (536)
+.+|+-+.++.....+++++|+|++..|.. .++.|-. ..++..++.+++.......+.|.... .|. .-..-.-.+
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~-~P~--sGG~y~~~~ 115 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTT-IPK--SGGEYNYIL 115 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC--CCchhhhHH
Confidence 456778999999999999999999999865 5556643 12344556667777777777776544 222 112333356
Q ss_pred hhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHH--HHhhccCCCcchhh
Q 009363 185 VTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCA--AVVLSQLPNLNSIA 262 (536)
Q Consensus 185 ~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~l~L~~l~~l~~l~ 262 (536)
+.+|+.++.+...........+.+..+....++.+.. ....+ + ........++...+ ++.+.-.+.++...
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~---~~~~~-~---~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~ 188 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILT---PVFPD-C---EVPEWAIRLVAVLCVLLLTLVNCLSVKWAT 188 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCC-C---CCchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 6899988876665432222123333343434443321 11111 0 01111111111111 11122234556666
Q ss_pred HHHHHHHHHHHHHHHHhhhhe---eeccCCCCcccC-CCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCC
Q 009363 263 GVSLVGAITAVGYCTIIWVVS---VAKGRLPGVSYN-PVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSE 338 (536)
Q Consensus 263 ~~S~i~~~~~v~~~~ii~~~~---~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~ 338 (536)
+++.+..+..+...+++++.+ ..++...+.+.+ ..... .....++..++....|+|.|-..+..+.+|+
T Consensus 189 ~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~---~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~---- 261 (501)
T TIGR00911 189 RVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGT---ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV---- 261 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCC---CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----
Confidence 665554433222111111111 112221111111 01111 1235678889999999999999999999999
Q ss_pred CCCCccCcchhhHHHHHHHHHHHHHHHhHHh
Q 009363 339 KHPSTVPMWKGVKFAYLIIATCLFPIAIGGY 369 (536)
Q Consensus 339 k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY 369 (536)
|||++ +..|++..+..++.++|++..+.-.
T Consensus 262 knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 262 KNPYR-TLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred cCchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88864 4569999999999999999865543
No 34
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.09 E-value=1.7e-07 Score=101.15 Aligned_cols=238 Identities=13% Similarity=0.091 Sum_probs=133.2
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhhh-hhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPVA-FPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~a-f~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
.+|+.+.++.....++.++|+|++..|-. .+..|-...++..++.+++......-+.|.... .+. .-.+-.-+++.
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~--aGG~y~y~~~~ 88 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPE--TGAFHVYAARY 88 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC--CCCHHHHHHHh
Confidence 45678999999999999999999887765 567775434666777788888888888886555 232 22455668888
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
+|+.++........+.. ...+.+.....+..+. .... ......+.+++..++..+ -.+..+..+.++.
T Consensus 89 ~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~----~~~p------~~~~~~~~~~~~~~~~~i-n~~gvk~~~~~~~ 156 (471)
T PRK11387 89 LGPATGYTVAWLYWLTW-TVALGSSLTAAGFCMQ----YWFP------QVPVWPWCLLFCALIFGL-NVVSTRFFAEGEF 156 (471)
T ss_pred cChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----hccC------cCcHHHHHHHHHHHHHHH-HHHhHHHHHHHHH
Confidence 99988877666543332 2222222222222221 1111 111222233232222222 2234444443332
Q ss_pred HHHH----HHHHHHHHhhh--heee---ccCC-CCc-ccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCC
Q 009363 267 VGAI----TAVGYCTIIWV--VSVA---KGRL-PGV-SYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMP 335 (536)
Q Consensus 267 i~~~----~~v~~~~ii~~--~~~~---~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~ 335 (536)
+..+ ..+.++++.+. .... ++.. +.. +++ ..++. .....++..++....|+|.|-..+...-+|+
T Consensus 157 ~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~- 232 (471)
T PRK11387 157 WFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLT-AEGWF--PHGGLPILMTMVAVNFAFSGTELIGIAAGET- 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccC-CCCCC--cccHHHHHHHHHHHHHHHcCHHHHHHHHHHh-
Confidence 2221 11111111111 1000 0110 000 011 00110 1123467888888999999999999999999
Q ss_pred CCCCCCCccCcchhhHHHHHHHHHHHHHHHhHH
Q 009363 336 SSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGG 368 (536)
Q Consensus 336 ~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~G 368 (536)
|||++ .+.|++..+..++.++|+...+..
T Consensus 233 ---knP~r-~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 233 ---ENPAK-VIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred ---cChhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88865 456899999998999998876544
No 35
>PRK10746 putative transport protein YifK; Provisional
Probab=99.08 E-value=3.8e-07 Score=98.11 Aligned_cols=359 Identities=11% Similarity=0.023 Sum_probs=184.2
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPV-AFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~-af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
.+|+.+.++..+..++++||+|++..|. +.+..|- ..++..++++++.+....-+.|.... .|. .-.+.+-+++.
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~-~P~--sGg~~~y~~~~ 83 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFL-EPV--TGSFAVYAHRY 83 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCHHHHHHHH
Confidence 4567899999999999999999988664 5666776 35667777888888888888887555 232 33677778999
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
+|+.+|..+.....+.. ...+.+.....+..++.. .. ......|.+++..+...+. .+..+..+.+..
T Consensus 84 ~g~~~Gf~~gw~~~~~~-~~~~~~~~~a~~~~l~~~----~p------~~~~~~~~~~~~~~~~~lN-~~gv~~~~~~e~ 151 (461)
T PRK10746 84 MSPFFGYLTAWSYWFMW-MAVGISEITAIGVYVQFW----FP------EMAQWIPALIAVALVALAN-LAAVRLYGEIEF 151 (461)
T ss_pred hCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc----cC------CCchHHHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 99988877766543222 333333333333333322 11 1122333333332222221 223333333322
Q ss_pred H----HHHHHHHHHHHhhhhe-eeccCC-CCcccCCCCCCc-cccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCC
Q 009363 267 V----GAITAVGYCTIIWVVS-VAKGRL-PGVSYNPVQTDK-EGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEK 339 (536)
Q Consensus 267 i----~~~~~v~~~~ii~~~~-~~~g~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k 339 (536)
. -++..+.++++.+... ...+.. +....+...++. .....+.++..++....|+|.|-..+...-+|+ |
T Consensus 152 ~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----k 227 (461)
T PRK10746 152 WFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----K 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----c
Confidence 2 1111111111111110 011110 001111111100 002236688899999999999999999999999 8
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCC--c-chhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 009363 340 HPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIP--S-GGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIY 416 (536)
Q Consensus 340 ~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~--~-~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~ 416 (536)
||+| .+.|++..++..+.++|.............+.. + .+....+.+.. ......+.++.+.+..+.+.--.
T Consensus 228 nP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g----~~~~~~i~~~~il~a~~s~~n~~ 302 (461)
T PRK10746 228 NPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIG----ITAAAGIINFVVLTAALSGCNSG 302 (461)
T ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhC----chhHHHHHHHHHHHHHHHHHHHH
Confidence 8864 457888888888888888754433333322111 1 12222221111 11222334444444444444333
Q ss_pred ccchHHHHHHH---------hhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh---hhHhHhhHHh
Q 009363 417 GMPMFDDLESL---------YVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL---PVTLAYPCFM 484 (536)
Q Consensus 417 ~~p~~~~le~~---------~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~---~l~filP~l~ 484 (536)
.+..-+.+... +.+.+++..| ..-..+.....++...+....|+-+.+++.+-+++. .+.+++.++.
T Consensus 303 ~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P-~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~ 381 (461)
T PRK10746 303 MYSCGRMLYALAKNRQLPAAMAKVSRHGVP-VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILIS 381 (461)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332233221 1111111111 111222222223333344455665666665544433 7788999988
Q ss_pred hHhhcCCC
Q 009363 485 WLKVKKPK 492 (536)
Q Consensus 485 ~l~~~~~~ 492 (536)
+++.+|+.
T Consensus 382 ~i~~r~~~ 389 (461)
T PRK10746 382 QLRFRRAH 389 (461)
T ss_pred HHHHHHhc
Confidence 88887643
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.07 E-value=4e-07 Score=97.50 Aligned_cols=237 Identities=13% Similarity=0.000 Sum_probs=135.0
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
.+|+-+.++.....++.++|......+.++++.|+..-++..++++++.......+.|...+ .+. .-..-.-+++.+
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~-~P~--~Gg~y~~~~~~~ 81 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTM-IPT--AGGGYGFARRAF 81 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC--CCCHHHHHHHHh
Confidence 35677888888888888998555566888899999644555566666666666677776554 222 223444678899
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
|+.++.+......+.. .....++....++.+..+++.. ....+.+++..+...+ -.+..+..++++.+
T Consensus 82 G~~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~~~p~~----------~~~~~~~~~~~~~~~l-n~~g~~~~~~i~~~ 149 (442)
T TIGR00908 82 GPWGGFLAGTAILIEF-AFAPPAIACFIGAYCESLFPVG----------PGWLAALVFYIVFIGI-NILGVGEAAKLEFV 149 (442)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccC----------chhHHHHHHHHHHHHH-HHHHHHHHHhHHHH
Confidence 9988887777654333 3344555566666665443211 1112222222211112 22344444444443
Q ss_pred HHHHHHHHHHHhhhheeeccCCCC---cccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCcc
Q 009363 268 GAITAVGYCTIIWVVSVAKGRLPG---VSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTV 344 (536)
Q Consensus 268 ~~~~~v~~~~ii~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~ 344 (536)
..+..+....+++.....+....+ .+++...... ...+.+++.++...+|+|.|...+...-+|+ |||++
T Consensus 150 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r- 222 (442)
T TIGR00908 150 VTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFL--PGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR- 222 (442)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-
Confidence 332222111111111111100000 0011000111 1234578888999999999999999999999 88865
Q ss_pred CcchhhHHHHHHHHHHHHHHHh
Q 009363 345 PMWKGVKFAYLIIATCLFPIAI 366 (536)
Q Consensus 345 ~~~~~v~~a~~i~~~~Y~~~gi 366 (536)
+..|++..+..++..+|+..-.
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH
Confidence 3458999998888888876644
No 37
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.06 E-value=3.2e-07 Score=98.64 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=134.9
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhh-hhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVA-FPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~a-f~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
+.+|+.+.++..+..+++++|+|++.+|.. .+..|- ..++..++.+++.......+.|...+ .+. .-..-+.+++
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~-~P~--~Gg~y~y~~~ 81 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVH-NPA--ASSFSRYAQE 81 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHH-cCC--CCCHHHHHHH
Confidence 345778999999999999999999999866 556665 46777888888888888888887655 232 2244446788
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHH
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVS 265 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S 265 (536)
.+||.++........+.. ...+.+.....+..+.. +.. ......|.+++..+...+ -.+..+..+.+.
T Consensus 82 ~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~l~~~l-n~~gv~~~~~~~ 149 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEI-LIVAIADVTAFGIYMGV----WFP------TVPHWIWVLSVVLIICAV-NLMSVKVFGELE 149 (457)
T ss_pred HcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----hCC------CCChHHHHHHHHHHHHHH-HHccchhHHHHH
Confidence 899988888777643332 22222222222322222 111 111223333332222222 233445444444
Q ss_pred HHHHHHHH----HHHHH---hhhheeecc-CCCCcc--cCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCC
Q 009363 266 LVGAITAV----GYCTI---IWVVSVAKG-RLPGVS--YNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMP 335 (536)
Q Consensus 266 ~i~~~~~v----~~~~i---i~~~~~~~g-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~ 335 (536)
.+..+..+ .++++ +......++ .+.+.+ ++..... ...+.++..++....|+|.|-..+...-+|+
T Consensus 150 ~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~- 225 (457)
T PRK10580 150 FWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFF---SNGWLGMVMSLQMVMFAYGGIEIIGITAGEA- 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCC---CcchHHHHHHHHHHHHHHhCHHHHHHHHHHh-
Confidence 33222111 11111 111111111 111111 1100001 2234578889999999999999999999999
Q ss_pred CCCCCCCccCcchhhHHHHHHHHHHHHHHHhH
Q 009363 336 SSEKHPSTVPMWKGVKFAYLIIATCLFPIAIG 367 (536)
Q Consensus 336 ~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~ 367 (536)
|||++ +..|++..+...+.++|......
T Consensus 226 ---knP~k-~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 226 ---KDPEK-SIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred ---cChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88875 34578877777777788765433
No 38
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.03 E-value=5e-07 Score=97.14 Aligned_cols=235 Identities=13% Similarity=0.039 Sum_probs=133.3
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhh-hhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVA-FPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~a-f~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
+.+|+.+.++..+..++++||+|++..|-. .++.|- ..++..++++++.+....-+.|...+ .|. .-.+.+-+++
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~-~P~--aGg~y~~~~~ 84 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVE-EPV--AGSFSHFAYK 84 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCHHHHHHH
Confidence 456788999999999999999999888865 445554 45666777777777777778886554 222 2355555778
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHH
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVS 265 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S 265 (536)
.+||..+........+.. ...+.+.....++.++... ++ .....+.+++..++..+. ....+..+.++
T Consensus 85 ~~g~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~~~----p~------~~~~~~~~i~~~~~~~lN-~~gv~~~~~~~ 152 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLY-VLVAMAELTAVGKYIQFWY----PE------IPTWVSAAVFFVVINAIN-LTNVKVFGEME 152 (456)
T ss_pred HcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc----Cc------CcHHHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence 899988888777654443 3334444444455443321 11 112223333222222222 23344444444
Q ss_pred HHHHHHHH----HHHHHhhhh-eeeccCCC-Cc-ccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCC
Q 009363 266 LVGAITAV----GYCTIIWVV-SVAKGRLP-GV-SYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSE 338 (536)
Q Consensus 266 ~i~~~~~v----~~~~ii~~~-~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~ 338 (536)
.+..+.-+ .++++.+.. ....+.+. .. ++.+..++. ...+.++..+++...|+|.|-..+...-+|+
T Consensus 153 ~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~---- 226 (456)
T PRK10238 153 FWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL--PHGFTGLVMMMAIIMFSFGGLELVGITAAEA---- 226 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc--cccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----
Confidence 43322211 111111111 10111110 11 000000111 1234567788889999999999999999999
Q ss_pred CCCCccCcchhhHHHHHHHHHHHHHH
Q 009363 339 KHPSTVPMWKGVKFAYLIIATCLFPI 364 (536)
Q Consensus 339 k~ps~~~~~~~v~~a~~i~~~~Y~~~ 364 (536)
|||+| .+.|++..+.....++|+..
T Consensus 227 knP~r-~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 227 DNPEQ-SIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred cChhh-HHHHHHHHHHHHHHHHHHHH
Confidence 88865 45688877777777777653
No 39
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.03 E-value=6.1e-07 Score=97.07 Aligned_cols=238 Identities=12% Similarity=0.069 Sum_probs=139.1
Q ss_pred CCCChhHHHHHHhhhcccccccchh-hhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcc
Q 009363 110 RNGNAYYAAFHTLCAGIGIQALVLP-VAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFG 188 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG~GiLaLP-~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG 188 (536)
|+.+.++..+..++.++|+|++..| .+.+..|-...++..++.+++.+....-+.|.... .+. ..-.|...+++.+|
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~-~P~-~gG~~~~~~~~~~g 79 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATF-YPV-VSGSFATYASRFVD 79 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-CCCCHHHHHHHHcC
Confidence 5678889999999999999998866 56677774433556777777777777778887655 231 12367778899999
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHH
Q 009363 189 EKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVG 268 (536)
Q Consensus 189 ~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~ 268 (536)
+.+|........+.. ...+.+.....+..+... . .......|..++.++...+ -.+..+..+.++.+.
T Consensus 80 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~i-n~~gv~~~~~~~~~~ 147 (478)
T TIGR00913 80 PAFGFAVGWNYWLQW-LIVLPLELVTASMTIQYW----T------DKVNPAVWIAIFYVFIVII-NLFGVKGYGEAEFWF 147 (478)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc----C------CCCCHHHHHHHHHHHHHHH-HHhcchHHHHHHHHH
Confidence 998887777653333 223333444444433321 1 1122334443332222222 234555555554433
Q ss_pred HHH----HHHHHHHhhhheeeccCCCCc-----ccCCCCCCccc--cchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCC
Q 009363 269 AIT----AVGYCTIIWVVSVAKGRLPGV-----SYNPVQTDKEG--IVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSS 337 (536)
Q Consensus 269 ~~~----~v~~~~ii~~~~~~~g~~~~~-----~~~~~~~~~~~--~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~ 337 (536)
... .+.+.++.+.. ...+..... .+.......+. ...+.++..++....|+|.|-..+..+-+|+
T Consensus 148 ~~~ki~~l~~~ii~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~--- 223 (478)
T TIGR00913 148 SSIKILAIIGFIILSIIL-NCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA--- 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh---
Confidence 221 11111111111 111111000 01000011100 1135678889999999999999999999999
Q ss_pred CCCCCccCcchhhHHHHHHHHHHHHHHHhH
Q 009363 338 EKHPSTVPMWKGVKFAYLIIATCLFPIAIG 367 (536)
Q Consensus 338 ~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~ 367 (536)
|||+| .+.|++..+..++.++|++..+.
T Consensus 224 -knP~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 224 -ANPRK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred -cChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88865 45699999999999999986543
No 40
>PRK10836 lysine transporter; Provisional
Probab=98.96 E-value=2.8e-06 Score=92.19 Aligned_cols=239 Identities=13% Similarity=0.089 Sum_probs=132.6
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPV-AFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~-af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
.+|+.+.++..+..++++||+|++.+|- +.++.|-...++..++++++......-+.|...+ .|. .-....-+++.
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~-~P~--sGg~y~y~~~~ 89 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAY-MPV--SGSFATYGQNY 89 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC--CCCHHHHHHHH
Confidence 4577899999999999999999999996 6777786446777888888888888888887655 322 22445556678
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
+|+.+|........+ . +..+.+........ +......+ .....+..++.+++..+. ....+..+.++.
T Consensus 90 ~g~~~gf~~Gw~~~~-~-~~~~~a~~~~a~~~---~~~~~~~~------~~~~~~~~~~~~~~~~lN-~~gv~~~~~~~~ 157 (489)
T PRK10836 90 VEEGFGFALGWNYWY-N-WAVTIAVDLVAAQL---VMSWWFPD------TPGWIWSALFLGVIFLLN-YISVRGFGEAEY 157 (489)
T ss_pred cChHHHHHHHHHHHH-H-HHHHHHHHHHHHHH---HhhhcCCC------CchHHHHHHHHHHHHHHH-HHcchhhhhhHH
Confidence 888887766655322 2 22222221111111 11111111 111122222222222221 223333333222
Q ss_pred HHH---H-HHHHHHH--HhhhheeeccCC-CC-cccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCC
Q 009363 267 VGA---I-TAVGYCT--IIWVVSVAKGRL-PG-VSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSE 338 (536)
Q Consensus 267 i~~---~-~~v~~~~--ii~~~~~~~g~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~ 338 (536)
+.. + ..+.+++ ++......++.. .+ .+++. ...+....+..+..+.....|+|.|-..+...-+|+
T Consensus 158 ~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~---- 231 (489)
T PRK10836 158 WFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTI--GDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES---- 231 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCC--CCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----
Confidence 111 1 1111111 111111112211 01 01110 000001234456666667789999999999999999
Q ss_pred CCCCccCcchhhHHHHHHHHHHHHHHHhHH
Q 009363 339 KHPSTVPMWKGVKFAYLIIATCLFPIAIGG 368 (536)
Q Consensus 339 k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~G 368 (536)
|||++ .+.|++..++..+.++|++....-
T Consensus 232 knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 232 EDPAK-NIPRAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred cCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88864 557899999999999999875543
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.92 E-value=1.3e-06 Score=93.67 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=126.6
Q ss_pred hhhcccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHHHHHHHH
Q 009363 122 LCAGIGIQALVLPV-AFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPL 200 (536)
Q Consensus 122 i~s~iG~GiLaLP~-af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~~~~~~ 200 (536)
++++||+|++..|- +.++.|. ..++..++.+++.......+.|.... .+. .-...+-+++.+||.+|..+.....
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~-~P~--~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVA-TPD--TGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CCCHHHHHHHHcChHHHHHHHHHHH
Confidence 57899999999887 7888886 47788888888888888888887655 222 2356666779999988887776643
Q ss_pred HHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhh
Q 009363 201 LQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIW 280 (536)
Q Consensus 201 ~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~~~v~~~~ii~ 280 (536)
+.. ...+.......+..+ +.... ......+.+++..+...+. .+..+..+.++.+..+.-+...++++
T Consensus 80 ~~~-~~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~i 147 (446)
T PRK10197 80 WFW-VLVIPLEANIAAMIL----HSWVP------GIPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFI 147 (446)
T ss_pred HHH-HHHHHHHHHHHHHHH----Hhccc------cCcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 322 111222222222222 11111 1112222222222222222 33444444444443322111111111
Q ss_pred hhee--eccCCC-----Cc-ccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhhHH
Q 009363 281 VVSV--AKGRLP-----GV-SYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKF 352 (536)
Q Consensus 281 ~~~~--~~g~~~-----~~-~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~ 352 (536)
+..+ ..|..+ +. ++....... ...+.++..++....|+|.|-..+...-+|+ |||+| .+.|++..
T Consensus 148 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~--p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~ 220 (446)
T PRK10197 148 FLGAVAISGFYPYAEVSGISRLWDSGGFM--PNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNS 220 (446)
T ss_pred HHHHHHhcCCCCCCCCCcchhcCCCCCCC--cccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHH
Confidence 1111 122111 10 010000010 2235689999999999999999999999999 88864 45688888
Q ss_pred HHHHHHHHHHHHHhH
Q 009363 353 AYLIIATCLFPIAIG 367 (536)
Q Consensus 353 a~~i~~~~Y~~~gi~ 367 (536)
++..+.++|+...+.
T Consensus 221 ~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 221 VIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888889999886555
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.86 E-value=9e-07 Score=90.61 Aligned_cols=287 Identities=16% Similarity=0.160 Sum_probs=167.9
Q ss_pred CChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhh
Q 009363 112 GNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKL 191 (536)
Q Consensus 112 ~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~ 191 (536)
-|..|....+..+.+|.|++.+|...++.+- -|.+..++.++....-.++..+..++ .+..+..|..++.+||+.
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~----~p~~~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKR----FPGKTLVEISEKLFGKWL 76 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHhCcHH
Confidence 4678999999999999999999999776641 33344555555555556666666555 334689999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHH-HHHHhhccCCCcchhhHHHHHHHH
Q 009363 192 AKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFT-CAAVVLSQLPNLNSIAGVSLVGAI 270 (536)
Q Consensus 192 g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~-~~~l~L~~l~~l~~l~~~S~i~~~ 270 (536)
|+.+.....++. +......+-..+|.+.... ..+ +..|.+... .+.....-.+.++.++..+.+-..
T Consensus 77 g~ii~~~~~l~~-l~~~~~~lr~~~~~i~~~~---lp~--------TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~ 144 (320)
T PF03845_consen 77 GKIINLLYILYF-LLISALVLREFSEFIKTYL---LPE--------TPIWVIILLFLLVAAYAARKGIEVIARVAEILFP 144 (320)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh---cCc--------CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 998877654443 3333333333333333321 111 233433322 222334446788888876555544
Q ss_pred HHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhh
Q 009363 271 TAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGV 350 (536)
Q Consensus 271 ~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v 350 (536)
..+....++...... +.+++...+.. ..++.++..+.-...+.|.+-..+.-+...+ |++++. +|..
T Consensus 145 ~~~i~~~~i~~~~~~-----~~~~~~l~P~~--~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~--~k~~ 211 (320)
T PF03845_consen 145 IFLILLLLILLLSIP-----NIDWDNLLPVL--ESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKL--KKSL 211 (320)
T ss_pred HHHHHHHHHHHHhcc-----cCCHHHeeCcc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHH--HHHH
Confidence 333333333333222 22222122211 3345678888888888898888888888888 665444 4888
Q ss_pred HHHHHHHHHHHHHHHhHHhhhcCCCCCc---chhhHHHhhhcCCCchHH---HHHHHHHHHHHHHHHhhhhhccchHHHH
Q 009363 351 KFAYLIIATCLFPIAIGGYWAYGQLIPS---GGMLVALIAFHATDTSRF---ILGLTSLFVIISAVSSFQIYGMPMFDDL 424 (536)
Q Consensus 351 ~~a~~i~~~~Y~~~gi~GY~~fG~~~~~---~~Il~~l~~~~~~~~~~~---~~~i~~l~~~i~ll~s~pl~~~p~~~~l 424 (536)
..+..+..++|...-+.....||.+..+ -+.+.....- +.++. +..+.-..-........-++.+-..+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i---~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~ 288 (320)
T PF03845_consen 212 LIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSI---EIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGL 288 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899888888888777777777753222 0111111000 11111 1122223334455556666777777778
Q ss_pred HHHhhhc
Q 009363 425 ESLYVRR 431 (536)
Q Consensus 425 e~~~~~~ 431 (536)
.+.+..+
T Consensus 289 ~~~f~~~ 295 (320)
T PF03845_consen 289 SQLFKLK 295 (320)
T ss_pred HHHhCCC
Confidence 8866543
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.83 E-value=8.8e-06 Score=87.44 Aligned_cols=250 Identities=14% Similarity=0.108 Sum_probs=140.3
Q ss_pred cccCCCChhH-HHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 107 TESRNGNAYY-AAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 107 ~~~~~~s~~~-a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
+.+++.+.++ .....++.++|.|++.++......+ ....+..++.+++.........|.... .+. .-.+-.-+++
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-~p~--~GG~y~~~~~ 84 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-IPS--AGGAYAYAKR 84 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CCCeeeehhh
Confidence 3445556666 8888888899999999999888775 112222344444444444555554433 111 2244455788
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHh--hccCCCcchhhH
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVV--LSQLPNLNSIAG 263 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~--L~~l~~l~~l~~ 263 (536)
.+|++.+........+.. .....+..+..+..+..++.... . .......+..+..++.+. +.-.+..+..++
T Consensus 85 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~ 158 (466)
T COG0531 85 ALGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSYLFPGPG-L----LSIGPLLIILIALALIALLTLLNLRGIKASAK 158 (466)
T ss_pred hcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcch-h----hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 899888866666544433 44445555555554444433210 0 000002222222222221 223456666666
Q ss_pred HHHHHHHHHHHHHHHhhhheeeccCCCC-cccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCC
Q 009363 264 VSLVGAITAVGYCTIIWVVSVAKGRLPG-VSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPS 342 (536)
Q Consensus 264 ~S~i~~~~~v~~~~ii~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps 342 (536)
+..+..+..+...+++.+..+....... ......... ......+..++....++|.|-..+...-+|+ |||+
T Consensus 159 ~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~ 231 (466)
T COG0531 159 INSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPG---GGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPK 231 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccc---cchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCcc
Confidence 6555554433333222222222211111 001101101 2234478899999999999999999999999 8875
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhHHhhhcCC
Q 009363 343 TVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQ 374 (536)
Q Consensus 343 ~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~ 374 (536)
+. ..|++..++.++..+|++..+.-....++
T Consensus 232 r~-ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 232 RT-IPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred cc-ccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 54 56999999999999999988777666654
No 44
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.68 E-value=7.2e-06 Score=85.03 Aligned_cols=352 Identities=14% Similarity=0.101 Sum_probs=195.9
Q ss_pred ccCCCChhHHHHHHhhhcccccc-cchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQA-LVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~Gi-LaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
-+|+.+.++--+.-+...||+|. |+--.+.+..|=- -++..++++++...-+..|.|...+ ++ ...++.+.+++.
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p--~~gSF~~~a~~~ 86 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NP--VSGSFSDYARKY 86 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CC--CCCcHHHHHHHH
Confidence 34566777888888999999994 5677788888853 3445677788888888888886555 33 356999999999
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHh--hccCCCcchhhH-
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVV--LSQLPNLNSIAG- 263 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~--L~~l~~l~~l~~- 263 (536)
+|+++|...... +.....-.+.+-+.-++..++..+.. ...+.|.+++..+... |.-.|.+.++.+
T Consensus 87 lG~~Agf~tgW~-YW~~wv~v~~ae~tAi~~y~~~WfP~----------vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfW 155 (462)
T COG1113 87 LGPWAGFLTGWT-YWFFWVLVGIAELTAIGIYLQFWFPD----------VPQWVFALAAVVLLLAVNLISVKVFGELEFW 155 (462)
T ss_pred hcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877766 33333555566666666555543322 1234444444433322 445666666665
Q ss_pred HHHHHHHHHHHHHHHh--hhheeeccC--CCCcccCCCC-CCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCC
Q 009363 264 VSLVGAITAVGYCTII--WVVSVAKGR--LPGVSYNPVQ-TDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSE 338 (536)
Q Consensus 264 ~S~i~~~~~v~~~~ii--~~~~~~~g~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~ 338 (536)
++++=++.++.++++. .+.....+. ..+.+.-..+ +.- ...+.+++.++-+.+|||.+...+=---.|-
T Consensus 156 fAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGff--P~G~~g~~~~~~~v~Faf~GiElvGitA~Et---- 229 (462)
T COG1113 156 FALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFF--PNGFLGFLSALQIVMFAFGGIELVGITAAEA---- 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcC--CCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----
Confidence 3444443333322221 111111111 1111110000 111 3456799999999999999999988888999
Q ss_pred CCCCccCcchhhHH-----HHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 009363 339 KHPSTVPMWKGVKF-----AYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSF 413 (536)
Q Consensus 339 k~ps~~~~~~~v~~-----a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~ 413 (536)
|||++. +.|++.. ...-...+..++.+.-+-.++++.+ +...-|.... -.+...+.+.-+..+.+.+.
T Consensus 230 ~dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S--PFV~~f~~iG----i~~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 230 KDPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS--PFVTVFSLIG----IPFAAGIMNFVVLTAALSAL 302 (462)
T ss_pred cChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC--cHHHHHHHcC----CcccccceeEEEeechhhcc
Confidence 777653 2344333 3333344444555555656665433 4444442221 11233333443333434433
Q ss_pred hhhccchHHHHHHHhhhc---------CCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh---hhHhHhh
Q 009363 414 QIYGMPMFDDLESLYVRR---------KKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL---PVTLAYP 481 (536)
Q Consensus 414 pl~~~p~~~~le~~~~~~---------~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~---~l~filP 481 (536)
---.+..-+.+..+-.+. +++..| +.-........+++.++....| +.++.++=+.++ ...+.+=
T Consensus 303 NSglystsRmL~~la~~g~APk~~~klsk~gVP-~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I 379 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVP-VNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMI 379 (462)
T ss_pred cccccccchHHHHHhhcCcccHhHhhccccCCC-HHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 222233333333321111 111111 3445666677788888888999 444444443333 3345555
Q ss_pred HHhhHhhcC
Q 009363 482 CFMWLKVKK 490 (536)
Q Consensus 482 ~l~~l~~~~ 490 (536)
.+.|+|.||
T Consensus 380 ~~s~l~~rk 388 (462)
T COG1113 380 LLSQLKLRK 388 (462)
T ss_pred HHHHHHHHh
Confidence 678888887
No 45
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.66 E-value=1.9e-07 Score=85.80 Aligned_cols=213 Identities=12% Similarity=0.166 Sum_probs=125.2
Q ss_pred hhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh--------------h-h-------
Q 009363 114 AYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN--------------V-E------- 171 (536)
Q Consensus 114 ~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~--------------~-~------- 171 (536)
..-....+.|-++|.|.|+||.||+..||++++.++.+.+++++.+....+++... . +
T Consensus 14 q~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~sta 93 (319)
T KOG3832|consen 14 QTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTA 93 (319)
T ss_pred hhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccccc
Confidence 34456677889999999999999999999999999999999999998888773111 0 0
Q ss_pred --------cC-----C------------------ccccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhH
Q 009363 172 --------TG-----M------------------RYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMK 220 (536)
Q Consensus 172 --------~g-----~------------------~~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~ 220 (536)
.| + +....++++...|.|. |.-+..+.++++.||....|-..+-....
T Consensus 94 sd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkv-gln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 94 SDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKV-GLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred CCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhh-hHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 00 0 1134778888888774 44444444455559999989777766666
Q ss_pred HHHHHhhC-C-------C-------CCCCCCC----chhhHHHHHHH-HHhhccCCCcchhhHHHHHHHHHHHHHHHHhh
Q 009363 221 TFYQITCG-A-------T-------CTSQPLT----TVEWYLVFTCA-AVVLSQLPNLNSIAGVSLVGAITAVGYCTIIW 280 (536)
Q Consensus 221 ~l~~~~~~-~-------~-------~~~~~~~----~~~~~~i~~~~-~l~L~~l~~l~~l~~~S~i~~~~~v~~~~ii~ 280 (536)
++.....+ + . |+++.++ .+.+..+|+++ ++|+. +-++++-+++.++..++--......+
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpft-f~diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFT-FADIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCcee-EeccccchhHHHHHHHHHHHhccchh
Confidence 65543322 1 2 3222222 22344455443 23443 34566666666554432211111111
Q ss_pred hheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhC
Q 009363 281 VVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATM 334 (536)
Q Consensus 281 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m 334 (536)
...-.+.. ++..- .+.+ ....-++-..++...|+|.||...|.....+
T Consensus 252 ~l~tmqae-edaa~----a~p~-arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 252 SLATMQAE-EDAAA----AHPP-ARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred hhhhhhhc-ccccc----cCCc-cccccccccccchhhHHHHhhccCCCCCCCC
Confidence 11101111 11110 1111 2223456677889999999999999988877
No 46
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.64 E-value=0.00011 Score=79.96 Aligned_cols=239 Identities=15% Similarity=0.151 Sum_probs=121.3
Q ss_pred cCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHH-HHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQ-LYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s-~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
+|+.+.++-+...+++++|.+ .+|.++++.|.. +++..++.+++. .-....+.|.... .++. .-.--.-.++++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~-~P~~-aGG~Y~w~~~~~ 80 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSA-FKDE-KGGIYSWMNKSV 80 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-CCcHHHHHHHHc
Confidence 456899999999999999976 568888888874 555555555443 3344556665433 2210 112233367789
Q ss_pred chhhhHHHHHHHHHHHhhhh---HH-------HHHHhhhhhhHHHHHHhhCCCCCCCCCCch-hh-HHHHHHH-HHhhcc
Q 009363 188 GEKLAKWLAFLPLLQLSAGT---CV-------ALIIVGGTSMKTFYQITCGATCTSQPLTTV-EW-YLVFTCA-AVVLSQ 254 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~---~v-------~yli~~~~~l~~l~~~~~~~~~~~~~~~~~-~~-~~i~~~~-~l~L~~ 254 (536)
|+++|.+..... ....... .. ++.++ +....+..+. ..+... .+ .+.+..+ .+-+.-
T Consensus 81 G~~~gf~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~t~vn 150 (496)
T PRK15238 81 GPKFAFIGTFMW-FASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHF--------LGLNSTQVVGILAVIWMILVTFVA 150 (496)
T ss_pred CchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhhhhh--------hcccchHHHHHHHHHHHHHHHHHH
Confidence 999888654331 1110110 11 11111 1111000000 001111 11 1111111 111233
Q ss_pred CCCcchhhHHHHHHHHHHHH----HHHHhhhheeeccCCC--CcccCCCCC-CccccchHHHHHHHHHHHHHHhcCCchH
Q 009363 255 LPNLNSIAGVSLVGAITAVG----YCTIIWVVSVAKGRLP--GVSYNPVQT-DKEGIVRAVDVLNALGIVAFAFRGHNLS 327 (536)
Q Consensus 255 l~~l~~l~~~S~i~~~~~v~----~~~ii~~~~~~~g~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~ii~faf~~h~~v 327 (536)
.|.++..+.++.++.+..+. ..++........+... +.+...... ..+......++..++....|+|.|-..+
T Consensus 151 ~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~ 230 (496)
T PRK15238 151 SKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAV 230 (496)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHH
Confidence 56777777776554322111 1111111111111111 111000000 0000111235777888899999999999
Q ss_pred HHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhH
Q 009363 328 LEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIG 367 (536)
Q Consensus 328 ~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~ 367 (536)
...-+|+ |||++ ...|++..+...+.++|.+..+.
T Consensus 231 ~~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 231 GGLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 88865 45699999999999999876443
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.47 E-value=0.0004 Score=75.27 Aligned_cols=245 Identities=7% Similarity=-0.023 Sum_probs=115.4
Q ss_pred cCCCChhHHHHHHhhhccc--cccc-chhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 109 SRNGNAYYAAFHTLCAGIG--IQAL-VLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG--~GiL-aLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
+|+-+.++....-+. ++| .|+. .++.+.++.|-...++..++.+++......-+.|.... .+. .-..-.-+++
T Consensus 11 ~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~-~P~--~Gg~y~~~~~ 86 (482)
T TIGR00907 11 KREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSA-YPT--SGGQYFWSAK 86 (482)
T ss_pred ecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhh-CCC--CccHHHHHHH
Confidence 455666665444444 444 4543 34556777777545666777888888888888886554 222 2234444667
Q ss_pred hcchhhhHHHHHHHHHHH---hhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhh--HHHHHHHHHh--hccCCCc
Q 009363 186 TFGEKLAKWLAFLPLLQL---SAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEW--YLVFTCAAVV--LSQLPNL 258 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~---~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~i~~~~~l~--L~~l~~l 258 (536)
++|+++++....+.-... ....+.+.....++.+..+......+ ..+....| .++...+.+. +.-....
T Consensus 87 ~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~in~~g~ 162 (482)
T TIGR00907 87 LAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG----REYIPTRWHIFGIMIGIHLIHALINSLPT 162 (482)
T ss_pred hcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCccccCchhhhhHHHHHHHHHHHHHhhH
Confidence 777666555444322211 12223333333444444433221110 00111112 2222111111 1112333
Q ss_pred chhhHHHHHHHHHHHH-HH-HHhhhheeeccCCCCcc--cCCCCCCc-cccchHHHHHHHHHHHHHHhcCCchHHHHHhh
Q 009363 259 NSIAGVSLVGAITAVG-YC-TIIWVVSVAKGRLPGVS--YNPVQTDK-EGIVRAVDVLNALGIVAFAFRGHNLSLEIQAT 333 (536)
Q Consensus 259 ~~l~~~S~i~~~~~v~-~~-~ii~~~~~~~g~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~ 333 (536)
|.++.++.+..+..+. .. ++++.....++..+..+ .+...+.. ........+..++-...|+|.|-..+...-+|
T Consensus 163 k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E 242 (482)
T TIGR00907 163 KWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEE 242 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHh
Confidence 4444444333222111 11 11111111111101111 11111100 00011124556666678999999999999999
Q ss_pred CCCCCCCCCccCcchhhHHHHHHHHHHHHHHHh
Q 009363 334 MPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAI 366 (536)
Q Consensus 334 m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi 366 (536)
+ |||+| .+.|++..+..++.++|++..+
T Consensus 243 ~----knP~r-~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 243 I----ENPEV-VGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred c----CChhh-hcCHHHHHHHHHHHHHHHHHHH
Confidence 9 88865 4568888888777655444333
No 48
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.39 E-value=0.00014 Score=72.32 Aligned_cols=134 Identities=16% Similarity=0.249 Sum_probs=97.6
Q ss_pred hHHHHHHhhhcccccccc---hhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhh
Q 009363 115 YYAAFHTLCAGIGIQALV---LPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKL 191 (536)
Q Consensus 115 ~~a~~~li~s~iG~GiLa---LP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~ 191 (536)
.+-.|-.+.+++|+|.-+ +=.-|.+-|+. |+...++++++-..++..+.+..++ -+..+|+|.-+..+||++
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~----f~a~~y~~~~~~v~~~~~ 80 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKK----FNATSYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH----hcccchHHHHHHHhhHHH
Confidence 345667777999999766 33445566775 8888888888888888888888777 457799999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhH--HHHHHHHHhhccCCCcchhhHHHHH
Q 009363 192 AKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWY--LVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 192 g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
+|+.+...++++ +++++.-+--.|..+++.+.. ..|. +++.++...+-++++.+.+-.++.+
T Consensus 81 ~ki~d~~iif~l-f~~~vVM~AGags~~~e~~~l-------------P~wiGali~i~~v~i~lfl~~vegi~tvn~i 144 (349)
T COG3949 81 AKIIDIIIIFFL-FSTAVVMLAGAGSLLEEMFGL-------------PYWIGALIIILLVLILLFLGRVEGIITVNGI 144 (349)
T ss_pred HHHHHHHHHHHH-HHHHHHHhccchhHHHHHhCc-------------cHHHHHHHHHHHHHHHHHHhcccceeeehee
Confidence 999999977776 998887777777677765432 2333 4444444455567777776655443
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.37 E-value=0.0011 Score=71.82 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=42.1
Q ss_pred HHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcC
Q 009363 316 IVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYG 373 (536)
Q Consensus 316 ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG 373 (536)
.+.|+|.|-..+...-+|+ |||++ ...|++..+..++.++|++..+.-....+
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999 88865 45699999999999999876555433333
No 50
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.34 E-value=0.0014 Score=69.82 Aligned_cols=356 Identities=13% Similarity=0.097 Sum_probs=200.3
Q ss_pred cccCCCChhHHHHHHhhhcccccc-cchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQA-LVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~Gi-LaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
+-+|+...+.-.+.-+...||+|. ++.-.+.++.|=...++..++++.+.+..+.-|.|.+.. .|. .-+|...+.+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~-~P~--sGsF~~ya~r 117 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVF-YPV--SGSFSTYATR 117 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC--CCchhhhhhh
Confidence 345677778888889999999995 569999999999988888999999999999999997665 331 2358888888
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHH-HHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhh--ccCCCcchhh
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVAL-IIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVL--SQLPNLNSIA 262 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~y-li~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L--~~l~~l~~l~ 262 (536)
..++-+|..+... ..+. +...++. ++..+..+ +.+..+ ......|..+|.++++.+ .-.|......
T Consensus 118 fvdpa~GFa~gWn-Yw~~-w~v~~~~El~aa~~vi----~yW~p~-----~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~E 186 (541)
T COG0833 118 FVDPAFGFALGWN-YWLN-WAVTLPLELTAASLVI----QYWFPD-----TVPPWIWIAIFLVLIFLLNLFGVKGFGETE 186 (541)
T ss_pred hcCchHHHHHHHH-HHHH-HHHHhhHHHHHHHHhh----hhhcCC-----CCChHHHHHHHHHHHHHHHHhcccccceeh
Confidence 8887666555443 2332 2222222 22222222 222211 235678988888776653 3457777666
Q ss_pred H-HHHHHHHHHHHHHHHhh--hheeeccCC-CCcccC-CCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCC
Q 009363 263 G-VSLVGAITAVGYCTIIW--VVSVAKGRL-PGVSYN-PVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSS 337 (536)
Q Consensus 263 ~-~S~i~~~~~v~~~~ii~--~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~ 337 (536)
+ +|.+=+++++.+.++.+ ......+.. -+.+|- ....+ ...+.++...+-+..|||.|...+---..|-
T Consensus 187 fw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F---~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs--- 260 (541)
T COG0833 187 FWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAF---AGGFKGFCSVFVIAAFSFSGTELVGLAAGES--- 260 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCC---CcchHHHHHHHhhheeeeeceeeeeeeeccc---
Confidence 5 45555555544433322 222222211 112221 11112 3346788899999999999988887777777
Q ss_pred CCCCCccCcchhhHHHHHHHHHHHHHHH-hHHhhh-cCCC---------CCcchhhHHHhhhcCCCchHHHHHHHHHHHH
Q 009363 338 EKHPSTVPMWKGVKFAYLIIATCLFPIA-IGGYWA-YGQL---------IPSGGMLVALIAFHATDTSRFILGLTSLFVI 406 (536)
Q Consensus 338 ~k~ps~~~~~~~v~~a~~i~~~~Y~~~g-i~GY~~-fG~~---------~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~ 406 (536)
+||.+ .+.|+++-.+.=..++|++.- +.|... |.|. +..++....+.+. + -..+..+.+..+.
T Consensus 261 -~nP~K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~-G---i~~~~~imNaVIL 334 (541)
T COG0833 261 -ENPRK-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNA-G---IPVAASIMNAVIL 334 (541)
T ss_pred -CCchh-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhc-C---CccchHHHHHHHH
Confidence 77764 456888888887888887632 234333 3330 1111444333221 1 1123345555555
Q ss_pred HHHHHhhhhhccchHHHHHHHhhhcC--------CCCCCchhhHHHHHHHHHHHHHHHhhccc---hHHHHHHHhhhHhh
Q 009363 407 ISAVSSFQIYGMPMFDDLESLYVRRK--------KKPCPWWLRPLIRAIYGFFMFFIAVAIPF---LGSLAGLIGGIALP 475 (536)
Q Consensus 407 i~ll~s~pl~~~p~~~~le~~~~~~~--------~~~~~~~~r~~~r~~~~~~~~~iAi~vP~---~~~v~~lvGa~~~~ 475 (536)
++++.+--=.++..-+.+..+-.++. +++-.-+.-..++.++.+++++-+.. .. +..++++.|... .
T Consensus 335 ~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~-~~~~vf~wL~~isg~s~-~ 412 (541)
T COG0833 335 TSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSF-KETTVFNWLLNISGLSG-F 412 (541)
T ss_pred HHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHH-H
Confidence 55555443333444444444322111 11111133344555555555555544 32 455566555332 3
Q ss_pred hHhHhhHHhhHhhcC
Q 009363 476 VTLAYPCFMWLKVKK 490 (536)
Q Consensus 476 l~filP~l~~l~~~~ 490 (536)
++.+-=++.|++-||
T Consensus 413 i~W~~I~~shirFR~ 427 (541)
T COG0833 413 IAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444566666554
No 51
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.30 E-value=0.0066 Score=65.71 Aligned_cols=253 Identities=14% Similarity=0.023 Sum_probs=126.3
Q ss_pred ccCCCChhHHHHHHhhhc-ccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 108 ESRNGNAYYAAFHTLCAG-IGIQALVLPV-AFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~-iG~GiLaLP~-af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
-+|+-+.++.+..-++.+ +|.|+.+++. +..+.|- ..+...++.++.+.....-+.|...+ .|. .-..-.-+++
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~--aGG~Y~~~~~ 86 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPI--SGAIYQWSRR 86 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCC--CCCHHHHHHH
Confidence 356678777776666653 7888877664 4556665 34555666777777777777776544 222 1133334677
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCC---c--hhhHHHHHHHH-HhhccCCCcc
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLT---T--VEWYLVFTCAA-VVLSQLPNLN 259 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~---~--~~~~~i~~~~~-l~L~~l~~l~ 259 (536)
++|+.++.+......+.. ...+.+........+..+......- ..+..+. . ..+.+...++. .-+.-.+..|
T Consensus 87 ~~g~~~gf~~gW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 87 MGGEVIGWFAGWFMIIAQ-IVTAAAAAIALQVVLPNIWSGFQII-GEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HcCccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhc-ccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 889988888777654433 2222222222333333322111000 0000110 1 11221111111 1111234445
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhheeeccCC-CCcccCC-CCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCC
Q 009363 260 SIAGVSLVGAITAVGYCTIIWVVSVAKGRL-PGVSYNP-VQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSS 337 (536)
Q Consensus 260 ~l~~~S~i~~~~~v~~~~ii~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~ 337 (536)
..++++.+..+..+...+++++........ +...++. ...+. ......+..+.....|+|.|-..+..+-+|+
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~--- 239 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGAS--PGYYGAFLVSGLMAAYVMVGFGSAGELSEET--- 239 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHh---
Confidence 555555444432221111111111111111 1100110 00111 1112356667777889999999999999999
Q ss_pred CCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcC
Q 009363 338 EKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYG 373 (536)
Q Consensus 338 ~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG 373 (536)
|||+| ...|++..+..+..++|.++-+......+
T Consensus 240 -knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 240 -KNPRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred -cCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88865 45689999988887766665544444334
No 52
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.30 E-value=0.0039 Score=67.41 Aligned_cols=150 Identities=12% Similarity=0.158 Sum_probs=87.1
Q ss_pred cCCCChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHH--HHHHHH-HHHHHHHHHCchhhhcCCccccHHHHHH
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLT--LTFIWQ-LYTLYILVQLHENVETGMRYSRYLQLCG 184 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli--~~~~~s-~~s~~lL~~~~~~~~~g~~~~sY~~l~~ 184 (536)
.|+.+++...+.+..+.+|++ .++.|-...+.|+.+..+... ..+.+. .+-...+.+..++ .+..|..|.-+
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~T~~e~l~ 114 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK----YNAITINDVLK 114 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCccHHHHHH
Confidence 467789999999999999875 677887777778643221111 111111 1111122222333 45789999999
Q ss_pred hhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHH
Q 009363 185 VTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGV 264 (536)
Q Consensus 185 ~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~ 264 (536)
+-||++..++...+..+...++..++-+...+..++.+++. +...-+++..++.+......-++...+.
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GG~~av~~t 183 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-----------SYLTALFIFSSSVLIYTTFGGFRAVALT 183 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99997665555444444444555555555556656555431 1222233444445556778888888888
Q ss_pred HHHHHHHHH
Q 009363 265 SLVGAITAV 273 (536)
Q Consensus 265 S~i~~~~~v 273 (536)
..+=.+.++
T Consensus 184 d~iQ~~v~~ 192 (471)
T TIGR02119 184 DAIQGIVMF 192 (471)
T ss_pred HHHHHHHHH
Confidence 777655443
No 53
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.26 E-value=0.0013 Score=71.78 Aligned_cols=52 Identities=10% Similarity=-0.044 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHh
Q 009363 310 VLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAI 366 (536)
Q Consensus 310 ~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi 366 (536)
....+..+.|+|.|-..+...-+|+ |||+| .+.|++..+..++.++|.+..+
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHHH
Confidence 3445555689999999999999999 88865 4569999998888888876443
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.19 E-value=0.0025 Score=68.26 Aligned_cols=244 Identities=18% Similarity=0.094 Sum_probs=122.4
Q ss_pred hhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhH
Q 009363 114 AYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAK 193 (536)
Q Consensus 114 ~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~ 193 (536)
|+...+++.+-.+|+.... + -+++..+++..++..++...-+.+......+ ...++.-+.|..||.+..+
T Consensus 23 W~~~~~~v~~~~~Ga~l~~----~-GLs~~~ailai~lG~~i~~~~~~l~~~~G~r-----~Gl~~~v~sR~~FG~~Gs~ 92 (442)
T TIGR00800 23 WLGAAFNIATWAIGALGLP----L-GLSWWQSVIAIILGNLLGGIFVALNSRAGAK-----YGLPFPVLSRASFGIYGSL 92 (442)
T ss_pred HHHHhhhHHHHHHHHHHHh----c-CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----hCCCcchhhhhhhhhhHhH
Confidence 3455555555555543322 1 1344445555444444433333333333222 2367888999999998777
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCC-CCCCCch--hhHHHHHHHHHhhccCCCcchhhHHHHHHHH
Q 009363 194 WLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCT-SQPLTTV--EWYLVFTCAAVVLSQLPNLNSIAGVSLVGAI 270 (536)
Q Consensus 194 ~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~-~~~~~~~--~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~ 270 (536)
+...+. ....+|=...-..+.++.+..+++...++.-+ ..+++.. ..++++..+.+++....-.+-+......+..
T Consensus 93 ~~~~~~-~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~~ 171 (442)
T TIGR00800 93 LPSLLR-IVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAVV 171 (442)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 776665 44447766777778888888888765432000 0101112 2233344444443334444444444444443
Q ss_pred HHHHH-HHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHH-HHhcCCchHHHHHhhCCCCCCCCCccCcch
Q 009363 271 TAVGY-CTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVA-FAFRGHNLSLEIQATMPSSEKHPSTVPMWK 348 (536)
Q Consensus 271 ~~v~~-~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~-faf~~h~~v~~i~~~m~~~~k~ps~~~~~~ 348 (536)
..+.. ...++...-..|..+-.+.. ..... ......+..++...+ +.-..-.+.++..+.+ |++++.. +
T Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~-~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~--~ 242 (442)
T TIGR00800 172 PPFAAFGMLIWALSKAHGKGPLGELT--GTLHG-STGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI--W 242 (442)
T ss_pred HHHHHHHHHHHHHHHcCCCCccccCC--CCCCc-chhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH--H
Confidence 22211 11111111111111111010 00011 223456666666533 2233466889999999 5544443 5
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhh----cCCCCC
Q 009363 349 GVKFAYLIIATCLFPIAIGGYWA----YGQLIP 377 (536)
Q Consensus 349 ~v~~a~~i~~~~Y~~~gi~GY~~----fG~~~~ 377 (536)
....++.........+|+.+-.. +|+...
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~ 275 (442)
T TIGR00800 243 GQFLALPGGFTLTCFFGILGAAAAYAAYGEPYW 275 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 56667777777777777777655 876543
No 55
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.16 E-value=0.0097 Score=64.54 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=85.1
Q ss_pred cCCCChhHHHHHHhhhcccc-cccchhhhhhhhchHHHHHHH--HHHH-HHHHHHHHHHHHCchhhhcCCccccHHHHHH
Q 009363 109 SRNGNAYYAAFHTLCAGIGI-QALVLPVAFPILGWAWGIIFL--TLTF-IWQLYTLYILVQLHENVETGMRYSRYLQLCG 184 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~-GiLaLP~af~~~G~~~giill--i~~~-~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~ 184 (536)
.|+.+++...+.+..+.+|+ ..++.|-...+.|+.+....+ .... +...+-+..+.+..++ .+..|+.|.-+
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~----~~~~T~~e~l~ 115 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK----YNAVTLNDMLR 115 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCccHHHHHH
Confidence 46678888888888887776 577788666667764211111 1111 1111122223333344 45789999999
Q ss_pred hhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHH
Q 009363 185 VTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGV 264 (536)
Q Consensus 185 ~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~ 264 (536)
+-||++..+....+..+...++...+-+.-.+..++.+++. +...-.++..++++..+...-++...+.
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GGl~av~~T 184 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI-----------SYETGLLIFGITVALYTAFGGFRAVVLT 184 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99997665555544334333444444455556666655431 1222233444445567778888888887
Q ss_pred HHHHHHHHH
Q 009363 265 SLVGAITAV 273 (536)
Q Consensus 265 S~i~~~~~v 273 (536)
..+-.+.++
T Consensus 185 D~iQ~~i~~ 193 (483)
T PRK09442 185 DALQGIVML 193 (483)
T ss_pred HHHHHHHHH
Confidence 776655433
No 56
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.07 E-value=0.0089 Score=62.87 Aligned_cols=319 Identities=16% Similarity=0.128 Sum_probs=156.7
Q ss_pred hhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhH
Q 009363 114 AYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAK 193 (536)
Q Consensus 114 ~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~ 193 (536)
|....+++.+-..|+.... +++..+++..++..++...-+-+......+ ...++.-++|..||+++.+
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~-----~Gl~~~v~sR~~FG~~Gs~ 74 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGAD-----TGLSAMGSLKLSLGSKGSV 74 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cCcCHHHHHHHHHccchhh
Confidence 4455666666666653211 555445555544444443333333333322 2468999999999998777
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHHHHH
Q 009363 194 WLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAV 273 (536)
Q Consensus 194 ~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~~~v 273 (536)
+...+. ...+.|=-..-....++.+..+.+...+. .....+.+++.++.++.+ ....+.++++..++.....
T Consensus 75 ~~~~l~-~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~ 146 (386)
T TIGR02358 75 LPSLLN-LLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLL 146 (386)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 666654 34435555555667788888887754321 112334544444444433 3455666666666655443
Q ss_pred HHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHH-hcCCchHHHHHhhCCCCCCCCCccCcchhhHH
Q 009363 274 GYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFA-FRGHNLSLEIQATMPSSEKHPSTVPMWKGVKF 352 (536)
Q Consensus 274 ~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~fa-f~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~ 352 (536)
..++...+....+....+ ..++ +. . ..+..++...+-. -..-...++..+.. |++++ .......
T Consensus 147 i~~~~~~~~~~~~~~~~~-~~~~-~~----~---~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~ 211 (386)
T TIGR02358 147 IATLWLLVVVFSKADLSE-LWNR-AG----D---MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVL 211 (386)
T ss_pred HHHHHHHHHHHhccchhh-hcCC-CC----C---ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHH
Confidence 333222222222211111 1111 00 1 1222232222110 11223467777777 54433 3366677
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhcC
Q 009363 353 AYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRK 432 (536)
Q Consensus 353 a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~le~~~~~~~ 432 (536)
+..+...+..++|...-.+.++. |..+.+.. .. ....+-+...++...+-....++.-..+...+.+ .
T Consensus 212 G~~i~~~~~~~~G~~~~~a~~~~----d~~~~~~~----~g---~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~-~ 279 (386)
T TIGR02358 212 GYFIGSCWMYFLGLAVTLATGQT----DIISILAG----AG---LGIPALLIILLSTVTTTFMDIYSAAISTGNLLPR-L 279 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHh----cc---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 78888888888888777666653 33333211 01 1112334445555555555566665555554422 1
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHhh--ccchHHHHHHHhhhHhhhHhHhhHHhhH
Q 009363 433 KKPCPWWLRPLIRAIYGFFMFFIAVA--IPFLGSLAGLIGGIALPVTLAYPCFMWL 486 (536)
Q Consensus 433 ~~~~~~~~r~~~r~~~~~~~~~iAi~--vP~~~~v~~lvGa~~~~l~filP~l~~l 486 (536)
++ +++..+ ..++.++++.. ...+..++++.|.+..++.-++=+=.|+
T Consensus 280 ~~----~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~i~Dy~l 328 (386)
T TIGR02358 280 KV----KHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVVFVDFFV 328 (386)
T ss_pred cc----hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 11 222222 12222222222 3457788888887777444444333333
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.02 E-value=0.016 Score=62.74 Aligned_cols=340 Identities=11% Similarity=0.020 Sum_probs=156.6
Q ss_pred hHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHH
Q 009363 115 YYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKW 194 (536)
Q Consensus 115 ~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~ 194 (536)
....+++.+-.++.|.+++ .+++..+++..++..++...-+.+..+...+ ...++.-++|..||.++.++
T Consensus 37 ~g~~~~i~~~~~~g~~l~~-----GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~-----~Gl~~~v~sR~sFG~~Gs~l 106 (484)
T PRK11375 37 MGSVHNVPNYVMVGGFFIL-----GLSTFSIMLAIILSAFFIAAVMVLNGAAGSK-----YGVPFAMILRASYGVRGALF 106 (484)
T ss_pred HHHhccHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHHHhcccccc-----cCCChhHhHHHHHccccchH
Confidence 3444444443344444432 2444445555555544444333444433332 24689999999999987677
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCC--C----CCCCCchhhH--HHHHHHHHhhccCCCcchhhHHHH
Q 009363 195 LAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATC--T----SQPLTTVEWY--LVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 195 ~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~--~----~~~~~~~~~~--~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
...+..+...+|=-..-..+.++.+..+++......- . ...++...+. +++..+..++. ....+.+++++.
T Consensus 107 ~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g~~~i~~l~~ 185 (484)
T PRK11375 107 PGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGGGKVLNKFTA 185 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHH
Confidence 6665422222333333445677777777655432100 0 0011121222 23333333443 456666766666
Q ss_pred HHHHHHHHHHHHhhhheeec-cCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhc-CCchHHHHHhhCCCCCCCCCcc
Q 009363 267 VGAITAVGYCTIIWVVSVAK-GRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFR-GHNLSLEIQATMPSSEKHPSTV 344 (536)
Q Consensus 267 i~~~~~v~~~~ii~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~-~h~~v~~i~~~m~~~~k~ps~~ 344 (536)
++....+...+.+.+..+.+ |..+-.++.+...... ....+.+..++...+=++. .-.+.++.-+.. |++++.
T Consensus 186 i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~----k~~~~~ 260 (484)
T PRK11375 186 ILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKA-ENSGFLFLVVINAVVAVWAAPAVSASDFTQNA----HSFRAQ 260 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCC-cchHHHHHHHHHHHHHHHHHHHccccchhccc----CChhhh
Confidence 66544332222221112211 2111111111000000 1123455555544333444 345778888888 655443
Q ss_pred CcchhhHHHHHHHHHHHHHHHhHH----hhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhh-hhhccc
Q 009363 345 PMWKGVKFAYLIIATCLFPIAIGG----YWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSF-QIYGMP 419 (536)
Q Consensus 345 ~~~~~v~~a~~i~~~~Y~~~gi~G----Y~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~-pl~~~p 419 (536)
. +...+++.+...+...+|+.. ...||+... |..+-+... + +.....++-+.++++...+= ..+.++
T Consensus 261 ~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~--dp~~i~~~~---~-~~~~~~~a~l~~v~a~~~tN~~~N~ys 332 (484)
T PRK11375 261 A--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTW--NVLDIVQRW---D-SLFASFFAVLVILMTTISTNATGNIIP 332 (484)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--CHHHHHHHh---c-chHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2 444445555555444444332 446665443 333333111 1 23344445555566655553 456777
Q ss_pred hHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhh--ccc---hHHHHHHHhhhHhhhHhHhhHHhh
Q 009363 420 MFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVA--IPF---LGSLAGLIGGIALPVTLAYPCFMW 485 (536)
Q Consensus 420 ~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~--vP~---~~~v~~lvGa~~~~l~filP~l~~ 485 (536)
.-..+.+.+.++-+ .+|..+ +..++..+++.. +.+ |..++++.|++.+++.-|+=+=+|
T Consensus 333 ~~~~l~~l~pk~i~-----~~~~~~--i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi~DY~ 396 (484)
T PRK11375 333 AGYQIAALAPTKLT-----YKNGVL--IASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYF 396 (484)
T ss_pred HHHHHHHhCcCccc-----hhhHHH--HHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 77777775543221 223221 111122222211 223 788888888887755444433333
No 58
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.98 E-value=4.8e-05 Score=82.36 Aligned_cols=235 Identities=13% Similarity=0.106 Sum_probs=131.2
Q ss_pred hhhccccccc-chhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHHHHHHHH
Q 009363 122 LCAGIGIQAL-VLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPL 200 (536)
Q Consensus 122 i~s~iG~GiL-aLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~~~~~~ 200 (536)
+..++|+|++ ..+.+..+.|.....+..++.+++...++.-+.|..++ .+ +.-.+-..+++.+|+..|........
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~-~p--~~Gg~y~y~~~~lg~~~Gf~~gw~y~ 83 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRR-FP--SAGGFYAYASRGLGPALGFAAGWAYW 83 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhh-hc--cccchhhhhhhccCCcCCceeeHHHH
Confidence 4567787754 47788999998767788888888888888888887666 32 23466677888999988877776632
Q ss_pred HHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhh----HHHHHHHHHhhccCCCcchhhHHHHHHHH----HH
Q 009363 201 LQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEW----YLVFTCAAVVLSQLPNLNSIAGVSLVGAI----TA 272 (536)
Q Consensus 201 ~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~----~~i~~~~~l~L~~l~~l~~l~~~S~i~~~----~~ 272 (536)
+.. .-.........+..++.. +. ..+ ......| ..++..++..+. ....+..+.+..+-.. ..
T Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~-~~-~~~-----~~~~~~~~~~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~~l 154 (478)
T PF00324_consen 84 LSY-IAAIAAEATAAGSFLQFW-GY-FPG-----LPSTWVWGILIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLIAL 154 (478)
T ss_pred HHH-HHHHHhhhhhhhhhhccc-cc-ccc-----ccccccccchhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhhHh
Confidence 222 222233333333333322 10 100 0101222 333333332222 2233333332222211 11
Q ss_pred HHHHHHhhhheeeccCCCCc-ccC-C------CCCC---ccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCC
Q 009363 273 VGYCTIIWVVSVAKGRLPGV-SYN-P------VQTD---KEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHP 341 (536)
Q Consensus 273 v~~~~ii~~~~~~~g~~~~~-~~~-~------~~~~---~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~p 341 (536)
+.+++..++.....+.+.+. .++ + .++. .. ..++.++..++...+++|.|-..+...-+|. |||
T Consensus 155 i~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P 229 (478)
T PF00324_consen 155 IAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPS-GGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNP 229 (478)
T ss_pred hhhhhhcccccccccCCCccccccccccccccccccccccc-ccchhHHHHhhhhhhcccccccccccccccC----CCc
Confidence 11111110111112111111 000 0 0000 01 2346789999999999999999999999999 888
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHhHHhhhcCC
Q 009363 342 STVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQ 374 (536)
Q Consensus 342 s~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~ 374 (536)
+| .+.|++..++....++|.......-...+.
T Consensus 230 ~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 230 RK-TIPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hh-hhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 65 457999999999999998877665444443
No 59
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00074 Score=73.64 Aligned_cols=369 Identities=16% Similarity=0.114 Sum_probs=185.7
Q ss_pred cCCCChhHHHHHHhhhcccccccc-hhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQALV-LPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~GiLa-LP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
+|+.+.+.-.+.=+.++||+|+.- ...+.++.|=..-++..+++++..+.+..-+.|..-+ .|.. .-++-.-+++..
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~-~P~~-aGs~~~ya~~~i 106 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVR-FPVS-AGSFYTYAYRFV 106 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHhee-cccc-cccceeeeeeee
Confidence 456677776777788999999765 6777888887766777888888888888888886554 2321 113333466677
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHH-HhhCCCCCCCCCCchhhHHHHHHHHH--hhccCCCcchhhHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQ-ITCGATCTSQPLTTVEWYLVFTCAAV--VLSQLPNLNSIAGV 264 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~l--~L~~l~~l~~l~~~ 264 (536)
|+-++..+..-..+.. +-.+-+-....+..++.... ...... ........|+.++.++.+ .+...+-....++.
T Consensus 107 ~e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w~~~~~~~~~--~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 107 GESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYWTGASLIGIL--VDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred CcHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhcccccccc--ccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 8766665555432222 22222333333333433320 000000 012223445554443322 23334443444433
Q ss_pred HHHHH-HHHHHHHHH--hhhheeeccCC---CCccc-CCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCC
Q 009363 265 SLVGA-ITAVGYCTI--IWVVSVAKGRL---PGVSY-NPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSS 337 (536)
Q Consensus 265 S~i~~-~~~v~~~~i--i~~~~~~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~ 337 (536)
..+.- ++++.++++ ++..+..++.. .+.+| .....+. ...+.++...+-+..|+|.|-..+-..-+|-
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~--p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~--- 258 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFF--PFGFKGVLSGAATAFFSFIGFELVATTAEEA--- 258 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcC--CCCcceeeHHHHHHHHHHhhHHHHHHHHHhc---
Confidence 33222 222222222 22222222111 11111 1111121 2226789999999999999999988888898
Q ss_pred CCCCCccCcchhhHHHHHHHHHHHHHHHhH-Hhhh-cCCC-CCcchhh-HHHhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 009363 338 EKHPSTVPMWKGVKFAYLIIATCLFPIAIG-GYWA-YGQL-IPSGGML-VALIAFHATDTSRFILGLTSLFVIISAVSSF 413 (536)
Q Consensus 338 ~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~-GY~~-fG~~-~~~~~Il-~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~ 413 (536)
|||.+ ...+++..++..+..+|+...+. |-.. |.+. ..++..+ .-|.-.-+...-..+..+.++...+.++.+-
T Consensus 259 -kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~ 336 (554)
T KOG1286|consen 259 -KNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSL 336 (554)
T ss_pred -cCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHH
Confidence 88864 45789999999999999987665 3333 3221 1110111 1110000001112222366666666666666
Q ss_pred hhhccchHHHHHHHhhhcC-CC---CCCchhhHHHH-HHHHHHHHHHHhhccc-----hHHHHHHHhhhHhhhHhHhhHH
Q 009363 414 QIYGMPMFDDLESLYVRRK-KK---PCPWWLRPLIR-AIYGFFMFFIAVAIPF-----LGSLAGLIGGIALPVTLAYPCF 483 (536)
Q Consensus 414 pl~~~p~~~~le~~~~~~~-~~---~~~~~~r~~~r-~~~~~~~~~iAi~vP~-----~~~v~~lvGa~~~~l~filP~l 483 (536)
--..++.-+.+..+-..+. ++ ...+..+-... .+..++..+.+..... ++.++++.|--. .+++.+=++
T Consensus 337 n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t-l~~w~~i~~ 415 (554)
T KOG1286|consen 337 NSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGT-LFAWTLVAL 415 (554)
T ss_pred HHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHH-HHHHHHHHH
Confidence 6666666555554321110 00 01111222222 2223333333333322 477777766333 445555555
Q ss_pred hhHhhcC
Q 009363 484 MWLKVKK 490 (536)
Q Consensus 484 ~~l~~~~ 490 (536)
.|++.|+
T Consensus 416 ~~i~~R~ 422 (554)
T KOG1286|consen 416 SHLRFRY 422 (554)
T ss_pred HHeeeee
Confidence 6666554
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.79 E-value=0.024 Score=60.04 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=89.6
Q ss_pred cCCCChhHHHHHHhhhcccc-cccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGI-QALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~-GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
.|+-+++...+.+..+.+|+ ..++.|....+.|+. +....+...+......++..+..++ .+..|..|.-+.-|
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~T~~e~l~~Ry 76 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN----NGAYTMPEYLEKRF 76 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----cCCCchhHHHHHHh
Confidence 35677888888888888775 577888877777864 2222222222223334444444444 34789999999999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
|++..+.+..+..+...+....+-+...+..++.+.+. +...-.++.+.+++......-++...+...+
T Consensus 77 g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-----------~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~i 145 (407)
T TIGR00813 77 GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-----------DLYLSLLLLGAITILYTVFGGLKAVVWTDTI 145 (407)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 98666666544434444666666666666666665431 1222233344444556667788888887776
Q ss_pred HHHHHH
Q 009363 268 GAITAV 273 (536)
Q Consensus 268 ~~~~~v 273 (536)
-.+.++
T Consensus 146 Q~~i~~ 151 (407)
T TIGR00813 146 QAVIMI 151 (407)
T ss_pred HHHHHH
Confidence 655433
No 61
>PRK12488 acetate permease; Provisional
Probab=97.78 E-value=0.079 Score=58.42 Aligned_cols=148 Identities=11% Similarity=0.144 Sum_probs=82.0
Q ss_pred cCCCChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHHHHHH-HHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFIWQLY-TLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~~s~~-s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
.|+.+++...+.+..+.++++ .++.|-.....|+- +.. ..+...+.+. ..+++.+-.++ .+..|..|.-++=
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~-~~~g~~~g~~~~~~~~a~~lr~----~g~~T~~d~l~~R 139 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLL-YALGVLAGWPIILFLIAERLRN----LGKYTFADVVSYR 139 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHH-HHHHHHHHHHHHHHHHHHHHHH----CCCcchHHHHHHH
Confidence 457788888888888888765 68888777777874 221 1111111111 12333332233 3368999998888
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
||.+..+.+..+..+..++.-..+-+.-.|..++.+++. +...-+++..++.+..+..--++...+...
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi-----------~~~~~iii~~~i~~~Yt~~GGm~av~~td~ 208 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI-----------SYLYAVVIVGALMVLYVTFGGMLATTWVQI 208 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 885444444433333332443444444555555554321 121223334445555667788888888877
Q ss_pred HHHHHHH
Q 009363 267 VGAITAV 273 (536)
Q Consensus 267 i~~~~~v 273 (536)
+-.+.++
T Consensus 209 iQ~~im~ 215 (549)
T PRK12488 209 IKAVLLL 215 (549)
T ss_pred HHHHHHH
Confidence 7655443
No 62
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.68 E-value=0.12 Score=56.22 Aligned_cols=146 Identities=15% Similarity=0.139 Sum_probs=84.8
Q ss_pred CCCChhHHHHHHhhhccc-ccccchhhhhhhhchHHHHHHHH---HHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 110 RNGNAYYAAFHTLCAGIG-IQALVLPVAFPILGWAWGIIFLT---LTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG-~GiLaLP~af~~~G~~~giilli---~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
|+-+.+-..+...-+.++ .-.+++|-..-+.|+....+... ...+.-.+-...+.+..+. ++..|..|.-++
T Consensus 38 R~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~----~~~~T~~d~l~~ 113 (493)
T COG0591 38 RSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA----RGATTIPDFLEA 113 (493)
T ss_pred CcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCccHHHHHHH
Confidence 344444666666677777 77999999988888753333322 2333333334444444433 457899999999
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHH
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVS 265 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S 265 (536)
-||+++-+.+..+..+...++-+..-++-++..++..+. . +...-.++...+++.-..+--+++..+..
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i----------~~~~~~~~~~~~v~~Yt~~gG~~av~~Td 182 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-I----------SYVTGILIGALIVALYTFLGGLRAVVWTD 182 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-C----------CHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 999435555544444555577777777777776654443 1 11111222233334455566777777766
Q ss_pred HHHHH
Q 009363 266 LVGAI 270 (536)
Q Consensus 266 ~i~~~ 270 (536)
.+=..
T Consensus 183 ~iqg~ 187 (493)
T COG0591 183 FIQGL 187 (493)
T ss_pred HHHHH
Confidence 55443
No 63
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.56 E-value=0.0049 Score=65.26 Aligned_cols=148 Identities=12% Similarity=0.115 Sum_probs=78.1
Q ss_pred cCCCChhHHHHHHhhhcccc-cccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGI-QALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~-GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
.|+.+++...+.+..+.+|+ ..++.|-...+.|+.. ....+...+......+++.+-.++ .+..|..|.-++-|
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~----~~~~T~~e~~~~Ry 79 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR----SGAVTIPEYLEKRY 79 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH----TT--SHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc----cchhhhhhhhhhhc
Confidence 46678888999999988887 4778888888888753 222222223333333444443334 45789999999999
Q ss_pred chhh-hHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHH
Q 009363 188 GEKL-AKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 188 G~~~-g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
|++. .+.+..+..+...+..+...+...+..++.+.. ++.....++...+++.....--++...+...
T Consensus 80 g~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-----------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~ 148 (406)
T PF00474_consen 80 GSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-----------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDF 148 (406)
T ss_dssp -HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHH
T ss_pred CCchhhhhhcccccchhhhhhhhccccccccchhhccc-----------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHH
Confidence 9976 345444433333344455555555555554432 1233334444555556777778888887776
Q ss_pred HHHHHH
Q 009363 267 VGAITA 272 (536)
Q Consensus 267 i~~~~~ 272 (536)
+-.+.+
T Consensus 149 iQ~~i~ 154 (406)
T PF00474_consen 149 IQGVIM 154 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 64
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.55 E-value=0.22 Score=55.02 Aligned_cols=147 Identities=12% Similarity=0.162 Sum_probs=79.2
Q ss_pred cCCCChhHHHHHHhhhccc-ccccchhhhhhhhchHHHHHHHHHHHHHHH-HHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 109 SRNGNAYYAAFHTLCAGIG-IQALVLPVAFPILGWAWGIIFLTLTFIWQL-YTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG-~GiLaLP~af~~~G~~~giilli~~~~~s~-~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
.|+.+++...+.+..+.++ ...++.|-...+.|+- +.... +...+.+ ...+++.+-.++ .+..|+.|.-++=
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~-~g~~~~~~i~~~~~a~~lrr----~g~~T~~d~l~~R 139 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYS-LGFLVGWPIILFLIAERLRN----LGRYTFADVASYR 139 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHH-HHHHHHHHHHHHHHHHHHHH----cCCccHHHHHHHH
Confidence 4566777777777777766 4688888777777764 22211 1111111 122334443333 3368999998888
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
||.+.-+.+..+..+..++.-.+.-++-.+..++.+++. +...-.++...+++..+...-++...+...
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-----------~~~~~iii~~~i~~~Yt~~GGm~av~~td~ 208 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-----------NYHVAVVLVGILMVMYVLFGGMLATTWVQI 208 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 875544444333323332333444445555555544321 111123344444555666778888888776
Q ss_pred HHHHHH
Q 009363 267 VGAITA 272 (536)
Q Consensus 267 i~~~~~ 272 (536)
+=.+.+
T Consensus 209 iQ~~im 214 (549)
T TIGR02711 209 IKAVLL 214 (549)
T ss_pred HHHHHH
Confidence 655433
No 65
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.53 E-value=0.23 Score=54.90 Aligned_cols=146 Identities=10% Similarity=0.053 Sum_probs=81.3
Q ss_pred cCCCChhHHHHHHhhhcccc-cccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGI-QALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~-GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
.|+.+++...+.+..+.+++ ..++.|-.....|+.. ...............+++.+-.++ .+..|-.|.-++=|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr----~~~~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRK----FGKYTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHH----CCCccHHHHHHHHh
Confidence 46778999999998888875 5778887666677632 111111111111223444554444 34678888888888
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
|++..+++..+..+...+.-...-+...+..++.+.+. +...-+++...+++..+..--++...+.-.+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-----------~~~~~iii~~~i~~iYt~~GG~~aV~~TD~i 174 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-----------DFETGVFIGMAIVFFYAVLGGMKGVTWTQVA 174 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 86655555544333332443444444445555544331 1212233444445556667788888887666
Q ss_pred HHH
Q 009363 268 GAI 270 (536)
Q Consensus 268 ~~~ 270 (536)
=.+
T Consensus 175 Q~i 177 (552)
T TIGR03648 175 QYI 177 (552)
T ss_pred HHH
Confidence 543
No 66
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.13 Score=54.45 Aligned_cols=259 Identities=14% Similarity=0.117 Sum_probs=128.2
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhcc--CCC
Q 009363 180 LQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQ--LPN 257 (536)
Q Consensus 180 ~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~--l~~ 257 (536)
..++|+.||.+.+++...+. ...+.|=...-.+..++.. .. .+ ..+...|+++.++++...+. .|-
T Consensus 84 mi~sR~~fG~~Gs~l~sll~-~~~~iGW~~v~~~l~~~a~---~~---~~-----~~~~~~~ili~g~l~~l~~ifG~r~ 151 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLN-GITLIGWFGVNVILSGIAI---GS---GT-----GLPVWAGILIIGVLMTLVTIFGYRA 151 (442)
T ss_pred heeecccccchhHHHHHHHH-HHHHhhHHHHHHHHhcccc---cc---CC-----CCcHHHHHHHHHHHHHHHHHHhHHH
Confidence 34578899997776665554 4445777666666666651 11 11 22345566666655544433 355
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHh-cCCchHHHHHhhCCC
Q 009363 258 LNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAF-RGHNLSLEIQATMPS 336 (536)
Q Consensus 258 l~~l~~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf-~~h~~v~~i~~~m~~ 336 (536)
++.+..++..-....+.+.+.....+ ++.. +..+.. . ..++.++..+++..+-.+ ..-....+..+.+
T Consensus 152 l~~l~~~a~~~~~~lf~~l~~~~~~~--~~~~-~~~~~~--~----~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~-- 220 (442)
T COG1457 152 LHKLERIAVPLLLLLFLYLLALLFRS--KGGL-DALWVK--G----PTSPLSFLSALSLVIGSFASWGPYAADYSRYA-- 220 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--cccc-ceeecc--C----CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc--
Confidence 55555555544444333333222211 1111 111110 0 223345555555443332 2456677788888
Q ss_pred CCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCC-CcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhh
Q 009363 337 SEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLI-PSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQI 415 (536)
Q Consensus 337 ~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~-~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl 415 (536)
|+|+.++.......+......+-+++|...-.+-|+.. .. ++...+ .+ +...+-+.+.++...+=-.
T Consensus 221 --~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~-~~~~~~-------G~--~g~~~~lil~l~~~ttN~~ 288 (442)
T COG1457 221 --PSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIA-DVMLGL-------GG--FGLPAILILVLGTVTTNAN 288 (442)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHhc-------cc--HHHHHHHHHHHHHHhcCcH
Confidence 44442222233444666667777778888888877765 22 333332 11 2233344444554444445
Q ss_pred hccchHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhh----ccchHHHHHHHhhhHhhhHhHh
Q 009363 416 YGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVA----IPFLGSLAGLIGGIALPVTLAY 480 (536)
Q Consensus 416 ~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~----vP~~~~v~~lvGa~~~~l~fil 480 (536)
..+...-.+.+...+ .++..+.+...+. +.+++|+. ..+++.++.++|....+...++
T Consensus 289 nlYsa~ls~~~i~~~-----l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~ 350 (442)
T COG1457 289 NLYSAGLSFANIIPK-----LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVM 350 (442)
T ss_pred HHHHHHHHHHHhhhh-----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444443321 1223343333332 33444443 4567888888887777444433
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=97.30 E-value=0.32 Score=51.45 Aligned_cols=203 Identities=14% Similarity=0.071 Sum_probs=89.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhh
Q 009363 140 LGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSM 219 (536)
Q Consensus 140 ~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l 219 (536)
+++..+++..++..++...-..+...... +-..++.-++|..||.++.++...+..+ ...|=...-..+.++.+
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~-----k~G~~~~v~sR~~FG~~Gs~l~~~~~~i-~~igW~av~~~~~~~~l 112 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGA-----KTGLSTHLLARFSFGEKGSWLPSLLLGF-TQVGWFGVGVAMFAIPV 112 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCcCHHHHHHHHhchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 44444555444444433332333333222 2247899999999999877766655432 22332222223344444
Q ss_pred HHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhcc--CCCcchhhHHHHHHHHHHHHHHHHhhhheeeccCCCCcccCCC
Q 009363 220 KTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQ--LPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPV 297 (536)
Q Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~--l~~l~~l~~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~ 297 (536)
+.+.. ++...+.+++..+..+.+. .|.++++..++.......+..+.+ +...-..|..+-.+..
T Consensus 113 ~~~~~-----------~~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~-~~~~~~~g~~~~~~~~-- 178 (404)
T PRK11017 113 VKATG-----------LDINLLIVLSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVW-LAVNDVGGLDGLKAIV-- 178 (404)
T ss_pred HHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCchhhhhcCC--
Confidence 43221 1122345555554444332 344444444433332222211111 1111011111100111
Q ss_pred CCCccccchHHHHHHHHHHHHHHh-cCCchHHHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCC
Q 009363 298 QTDKEGIVRAVDVLNALGIVAFAF-RGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQ 374 (536)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~ii~faf-~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~ 374 (536)
+. ....+..++...+=.+ ..-.+.++.-+.. |++++. ......++.+...+...+|...-.++|+
T Consensus 179 -~~-----~~~~~~~a~~~~~g~~~~~~~~~~DysRy~----k~~~~~--~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 179 -PA-----EPLDFSAALTLVVGSFISGGTLTADFVRFG----RSAKIA--VLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred -CC-----CcccHHHHHHHHHHHHHHhHhcCCChHhhc----cCccce--eehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11 1123444444332222 2356677777777 544322 1344556656666666667666566664
No 68
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.27 E-value=0.11 Score=55.56 Aligned_cols=246 Identities=13% Similarity=0.079 Sum_probs=117.4
Q ss_pred hhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh-hhcCCccccHHHHHHhhcchhhh
Q 009363 114 AYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN-VETGMRYSRYLQLCGVTFGEKLA 192 (536)
Q Consensus 114 ~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~-~~~g~~~~sY~~l~~~~fG~~~g 192 (536)
.+...|.+.+..-|. ..++.+.....|-..-.-..++.++.++....-|.|.+-. |..| .-|--.+.. -+||++
T Consensus 55 ~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG---gLy~waa~l-ap~k~~ 129 (550)
T KOG1289|consen 55 IFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSG---GLYFWAAVL-APPKYG 129 (550)
T ss_pred HHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC---cHHHHHHHh-cCcchh
Confidence 345556666655553 2345555554553322222555666666667777775443 2223 123332322 277777
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhC---CCCCCCCCCchhhHHHHHHHHHhhccCC--CcchhhHHHHH
Q 009363 193 KWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCG---ATCTSQPLTTVEWYLVFTCAAVVLSQLP--NLNSIAGVSLV 267 (536)
Q Consensus 193 ~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~l~L~~l~--~l~~l~~~S~i 267 (536)
+++..+.-....+| +....+..-....+.... -...+...++.....++.++.+..+++. --+.+++++-+
T Consensus 130 ~~~sw~~Gw~~~~g----~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~ 205 (550)
T KOG1289|consen 130 PFASWVTGWLNYLG----QATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSV 205 (550)
T ss_pred hHHHHHHHHHHHHH----HHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 77766643332222 222222222221111100 0011122233334444544444433322 23456666666
Q ss_pred HHHHHHHHHHH--hhhheeeccC---CCCcc-cCCCCCCccccc-hHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCC
Q 009363 268 GAITAVGYCTI--IWVVSVAKGR---LPGVS-YNPVQTDKEGIV-RAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKH 340 (536)
Q Consensus 268 ~~~~~v~~~~i--i~~~~~~~g~---~~~~~-~~~~~~~~~~~~-~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ 340 (536)
++...+...++ |+.....++. ..+.. +......+. .. .-+.+..++-.-+..+.|-.....+-+|- |+
T Consensus 206 ~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sg-w~~~G~afil~f~~~~wt~sGyDa~~H~aEE~----~n 280 (550)
T KOG1289|consen 206 SVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSG-WKNNGWAFILGFFNPAWTMSGYDAAAHMAEET----KN 280 (550)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCC-CCcchHHHHHhhccceeEEeccCchHHHHHHh----cc
Confidence 66543332222 2222222222 21110 111111111 11 34566666777778888989999999999 77
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCC
Q 009363 341 PSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQ 374 (536)
Q Consensus 341 ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~ 374 (536)
+++. ..|++..+..++.++=..+-+.-..+-++
T Consensus 281 Ask~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 281 ASKA-APRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred hhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7654 35888888777766666655555555553
No 69
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.36 Score=50.98 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhcCC
Q 009363 438 WWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVKKP 491 (536)
Q Consensus 438 ~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~~~ 491 (536)
|.+|...|.+..+.+.++.+.+-+...++.+.+.+.+ .+-+.+..++.+-.+|+
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 5677788877777766666665589999999999988 77777777776666654
No 70
>PRK10484 putative transporter; Provisional
Probab=97.24 E-value=0.47 Score=52.02 Aligned_cols=155 Identities=10% Similarity=0.101 Sum_probs=79.7
Q ss_pred cCCCChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
.|+.+++-..+.+..+.++++ .++.|-...+.|+... .......+......+++.+-.++ .+..|..|.-++-|
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~~~~~~~~~~~~~~~p~~~r----~~~~T~~e~l~~Ry 111 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEVTAAIALIILALIFLPRYLK----SGITTIPDFLEERY 111 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHhc
Confidence 567788888888888877764 6778866666775421 11111111111223333332233 44789999999999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHH--hhCCCCCCCCCCchhhH--HHHHHHHHhhccCCCcchhhH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQI--TCGATCTSQPLTTVEWY--LVFTCAAVVLSQLPNLNSIAG 263 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~--~i~~~~~l~L~~l~~l~~l~~ 263 (536)
|++..++...+..+...+..+...+...+..+..++.. ..+ -+.....+. ++..++.+..+..--++...+
T Consensus 112 g~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~g-----i~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~ 186 (523)
T PRK10484 112 DKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLG-----ISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAV 186 (523)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-----CcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 98877766555433331222222222333334443221 110 001111222 112233345666788888888
Q ss_pred HHHHHHHHHH
Q 009363 264 VSLVGAITAV 273 (536)
Q Consensus 264 ~S~i~~~~~v 273 (536)
...+-.+.++
T Consensus 187 TD~iQ~vim~ 196 (523)
T PRK10484 187 SDTINGIGLL 196 (523)
T ss_pred HHHHHHHHHH
Confidence 7776655433
No 71
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.06 E-value=0.59 Score=49.83 Aligned_cols=199 Identities=14% Similarity=0.032 Sum_probs=96.3
Q ss_pred ccccHHHHHHhhcchhhhHHHHHH--HHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCC------CCCCCCCchhhHHHHH
Q 009363 175 RYSRYLQLCGVTFGEKLAKWLAFL--PLLQLSAGTCVALIIVGGTSMKTFYQITCGAT------CTSQPLTTVEWYLVFT 246 (536)
Q Consensus 175 ~~~sY~~l~~~~fG~~~g~~~~~~--~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~------~~~~~~~~~~~~~i~~ 246 (536)
....|..++|..||-++.++-.+. .+.+..+|.-. -.++..+..++....++. ......++..|+..+.
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 358999999999987544433221 11222344432 345556666666554331 0011223334433222
Q ss_pred HH-HHhhccCCCcchhhHHHHHHHHHHHHHHHHh--hhheeeccCCCCcccCCC-CCCccccchHHHHHHHHHHHHHHhc
Q 009363 247 CA-AVVLSQLPNLNSIAGVSLVGAITAVGYCTII--WVVSVAKGRLPGVSYNPV-QTDKEGIVRAVDVLNALGIVAFAFR 322 (536)
Q Consensus 247 ~~-~l~L~~l~~l~~l~~~S~i~~~~~v~~~~ii--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ii~faf~ 322 (536)
.= +-.++..+..++++++-.++..+....+... +...-..|...- .+.. ...+. ...++.++..+...+=-|.
T Consensus 178 fW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~--~~~p~~~~~~-~~~~w~~~~~~~~~v~~~A 254 (497)
T COG1953 178 FWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSIL--GELPAGTVSG-SNSSWAFLAGIAAWVGFWA 254 (497)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCcc--ccCCCCCCCc-chhHHHHHHHHHHHHHHHH
Confidence 21 1135567788888887776655433333222 222222231110 1101 00111 2334455554433333332
Q ss_pred -CCchHHHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHH----hHHhhhcCCCCCc-chhhHHH
Q 009363 323 -GHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIA----IGGYWAYGQLIPS-GGMLVAL 385 (536)
Q Consensus 323 -~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~g----i~GY~~fG~~~~~-~~Il~~l 385 (536)
..-|+|+.-+.- |+++... ..-.++.-+.+.+.-++| ...+..||+..-+ -||++++
T Consensus 255 tl~lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~ 317 (497)
T COG1953 255 TLALNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARF 317 (497)
T ss_pred HHhcCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHh
Confidence 356777877777 5544332 233344444444444444 4468889998654 3777777
No 72
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.95 E-value=0.45 Score=50.34 Aligned_cols=335 Identities=16% Similarity=0.155 Sum_probs=156.4
Q ss_pred ChhHHHHHHhhhcccccccchhhhhhh-h--chHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcch
Q 009363 113 NAYYAAFHTLCAGIGIQALVLPVAFPI-L--GWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGE 189 (536)
Q Consensus 113 s~~~a~~~li~s~iG~GiLaLP~af~~-~--G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~ 189 (536)
......+.+..-..|+|-|-.|-..-+ + -|.++.+.+++.++.--.-..+ -..+. ..+++++++++ ||
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi--a~~~~------~~~~~~l~~~v-~~ 74 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI--AVAKS------GGGIEDLASRV-GP 74 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HHhhc------CCCHHHHhccc-Cc
Confidence 455667778888899999999976532 3 3777888777776544332211 11122 12888988875 66
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCC--cchhhHHHHH
Q 009363 190 KLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPN--LNSIAGVSLV 267 (536)
Q Consensus 190 ~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~--l~~l~~~S~i 267 (536)
+.+.+...+ ++++.|-+.+-=-...-..+-.+....+. +..+....+.++|..+...+++-++ ++.+..+=.-
T Consensus 75 ~f~~if~~~--i~l~IGP~~aiPRtaa~sfe~~i~p~~~~---~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP 149 (427)
T PF05525_consen 75 KFALIFTIL--IYLSIGPLFAIPRTAAVSFEMGIAPFFPE---NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTP 149 (427)
T ss_pred HHHHHHHHH--HHHHHHhcccCcchhhhhHHHhhhccCCc---ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 666666543 33334433211111111112111111110 1234444555555555555553322 3333322211
Q ss_pred HHHHHHHHHHHhhhheeec--cCCCCc--ccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCc
Q 009363 268 GAITAVGYCTIIWVVSVAK--GRLPGV--SYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPST 343 (536)
Q Consensus 268 ~~~~~v~~~~ii~~~~~~~--g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~ 343 (536)
. .+....++++.++.+ |..... +|.. .+......+-.+-+.+++-++|+- .+..-.++..- +++++
T Consensus 150 ~---LL~~l~ilii~~i~~p~g~~~~~~~~y~~-~~f~~Gf~eGY~TMD~laal~Fg~----iIi~~i~~~g~--~~~k~ 219 (427)
T PF05525_consen 150 I---LLILLAILIIKGIFSPIGPPQAPSGAYAS-NPFFKGFLEGYQTMDALAALAFGI----IIINAIRQKGY--KDKKE 219 (427)
T ss_pred H---HHHHHHHHHHHHHHcCCCCccccchhhhh-hHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHhCC--CCHHH
Confidence 1 122222233333333 222111 1210 010000111123445566666543 22222333311 11111
Q ss_pred --cCcchhhHHHHHHHHHHHHHHHhHHhhhcC---CCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhcc
Q 009363 344 --VPMWKGVKFAYLIIATCLFPIAIGGYWAYG---QLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGM 418 (536)
Q Consensus 344 --~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG---~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~ 418 (536)
+...++-.++.....++|...+..|...-+ ++.+++.++....+.- -.+.-..+..+.+.++++++-.-...
T Consensus 220 ~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~---~G~~G~~ll~iiv~lACLTTaIGL~~ 296 (427)
T PF05525_consen 220 IKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHL---FGSAGQILLGIIVFLACLTTAIGLIS 296 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233334556667788888887765543 3444446666653211 11122334556666777777666666
Q ss_pred chHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhh
Q 009363 419 PMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKV 488 (536)
Q Consensus 419 p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~ 488 (536)
.+-|.+++.+. |- +.. ....+..+.++++|.. .++.++. ++. .+.+++|..+-+.+
T Consensus 297 a~a~yf~~~~~-ki----sY~---~~v~i~~i~S~~ian~--Gl~~Ii~----~s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 297 ACAEYFSELFP-KI----SYK---VWVIIFTIFSFIIANL--GLDQIIK----ISVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHHHHHHHhc-cc----ChH---HHHHHHHHHHHHHHHh--CHHHHHH----HHHHHHHHHhHHHHHHHH
Confidence 67777777553 11 111 1112223444444432 4566666 456 78888888876655
No 73
>PRK09395 actP acetate permease; Provisional
Probab=96.92 E-value=0.95 Score=49.99 Aligned_cols=146 Identities=10% Similarity=0.115 Sum_probs=77.8
Q ss_pred cCCCChhHHHHHHhhhcccc-cccchhhhhhhhchHHHHHHHHHHHHHH-HHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 109 SRNGNAYYAAFHTLCAGIGI-QALVLPVAFPILGWAWGIIFLTLTFIWQ-LYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~-GiLaLP~af~~~G~~~giilli~~~~~s-~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
.|+.+++...+.+..+.+|+ ..++.|-.....|+.. .. ..+...+. ....+++.+-.++ ....|+.|.-+.=
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~-~~~~~~~g~~~~~~~~~~~~r~----~g~~T~~d~l~~R 141 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LI-YSIGFLVGWPIILFLIAERLRN----LGKYTFADVASYR 141 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HH-HHHHHHHHHHHHHHHHHHHHhh----CCCccHHHHHHHH
Confidence 45667787888888888775 4778887776778742 21 11111111 1112333332333 3368999999988
Q ss_pred cchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHH
Q 009363 187 FGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSL 266 (536)
Q Consensus 187 fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~ 266 (536)
||++.-+.+..+..+...+....+-++-.+..++.+++ ++...-.++..++++..+..--++...+...
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-----------i~~~~~ili~~~i~~iYt~~GGm~av~~TD~ 210 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-----------LNYHVAVVLVGVLMMVYVLFGGMLATTWVQI 210 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 98543344433322222233333333444444444432 1122223344445555666778888888776
Q ss_pred HHHHH
Q 009363 267 VGAIT 271 (536)
Q Consensus 267 i~~~~ 271 (536)
+=.+.
T Consensus 211 iQ~ii 215 (551)
T PRK09395 211 IKAVL 215 (551)
T ss_pred HHHHH
Confidence 55443
No 74
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.87 E-value=0.97 Score=49.30 Aligned_cols=152 Identities=11% Similarity=0.096 Sum_probs=76.9
Q ss_pred cCCCChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHHHH-HHHHHHHHHCchhh-hcCCccccHHHHHHh
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFIWQ-LYTLYILVQLHENV-ETGMRYSRYLQLCGV 185 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~~s-~~s~~lL~~~~~~~-~~g~~~~sY~~l~~~ 185 (536)
.|+.+++...+.+..+.+++. .++.|-...+.|+-. ....+...+. .....++.+-.+.+ ....+..|..|.-++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE--SWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 567788888888888888865 677888777788642 1111111111 11112222111110 011346788898888
Q ss_pred hcchhh--hHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhH
Q 009363 186 TFGEKL--AKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAG 263 (536)
Q Consensus 186 ~fG~~~--g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~ 263 (536)
=||++. -+.+..+..+...+.-+.+-+...+..++.+++ ++...-.++...+++..+..--++...+
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-----------i~~~~~iii~~~iv~iYt~~GGl~aV~~ 185 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-----------MSYETALWAGAAATILYTFIGGFLAVSW 185 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 888632 222222211221122222223333444444332 1122223444455566777888888888
Q ss_pred HHHHHHHHHH
Q 009363 264 VSLVGAITAV 273 (536)
Q Consensus 264 ~S~i~~~~~v 273 (536)
...+=.+.++
T Consensus 186 TD~iQ~~imi 195 (502)
T PRK15419 186 TDTVQASLMI 195 (502)
T ss_pred HHHHHHHHHH
Confidence 7777655433
No 75
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.81 E-value=0.88 Score=47.93 Aligned_cols=213 Identities=14% Similarity=0.148 Sum_probs=102.7
Q ss_pred CChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCc--hhhhcCCccccHHHHHHhhcc
Q 009363 112 GNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLH--ENVETGMRYSRYLQLCGVTFG 188 (536)
Q Consensus 112 ~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~--~~~~~g~~~~sY~~l~~~~fG 188 (536)
.|-..=++..+.+.+|.| +--.||-..+.|=..-++. -++..+..=--.++.|-. ++ ..+....+|+.++. +
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~-yli~~l~~GiPlli~Ef~iGr~-~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLP-YLIFLLLVGIPLLLAEFAIGRR-GRKNAVGAFRKLAP---K 83 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHH-HHHHHHHHhHHHHHHHHHhhhh-cCCChhHHHHHhcc---C
Confidence 355667778889999998 7789999888875422222 222222221123333421 11 11133567887775 3
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCC--------------CCCCCCCCchhhHHHHHHHHHhhcc
Q 009363 189 EKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGA--------------TCTSQPLTTVEWYLVFTCAAVVLSQ 254 (536)
Q Consensus 189 ~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~--------------~~~~~~~~~~~~~~i~~~~~l~L~~ 254 (536)
| ..+++....+.. ++..+.-|.+++|=.+..+.....+. .++ ..+....|.+++..+.. +..
T Consensus 84 ~-~~~~~G~~gv~~-~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~lt~-~iv 159 (439)
T COG0733 84 K-KWEWIGWFGVLG-GFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTIS-NPGLAVIFHLLFLVLTA-LIV 159 (439)
T ss_pred c-cchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhc-CchHHHHHHHHHHHHHH-HHH
Confidence 3 344444443222 25556667777777666665544321 010 11111222222222111 111
Q ss_pred CCCcch-hhHHHHHHHHHHHHHHHHhhhheee-ccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcC-CchHHHHH
Q 009363 255 LPNLNS-IAGVSLVGAITAVGYCTIIWVVSVA-KGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRG-HNLSLEIQ 331 (536)
Q Consensus 255 l~~l~~-l~~~S~i~~~~~v~~~~ii~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~-h~~v~~i~ 331 (536)
.|-+++ +...|.+-+-..++..++++++++. .|..++.++--.++++. ..+...+..++|...|+..- -..+...-
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~-l~~~~v~~~AlGQ~FFsLSlG~g~mitYs 238 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSK-LTDPKVWLAALGQAFFSLSLGFGIMITYS 238 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHH-cCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333 5555555443333333333344433 33333333221112222 34456788999999999874 44444444
Q ss_pred hhC
Q 009363 332 ATM 334 (536)
Q Consensus 332 ~~m 334 (536)
+.+
T Consensus 239 SYL 241 (439)
T COG0733 239 SYL 241 (439)
T ss_pred hhc
Confidence 556
No 76
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.80 E-value=1.1 Score=48.79 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=75.5
Q ss_pred cCCCChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhc--CCccccHHHHHHh
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVET--GMRYSRYLQLCGV 185 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~--g~~~~sY~~l~~~ 185 (536)
.|+-+++-..+.+..+.+++. .++.|-...+.|+.. ........+........+.+-.++ .. +.+..|..|.-+.
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~-~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRV-YTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HhHhhcCCccHHHHHHH
Confidence 466788888888888777654 667886666678742 211111111122223333332121 01 2346789999999
Q ss_pred hcchhhhH---HHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhh
Q 009363 186 TFGEKLAK---WLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIA 262 (536)
Q Consensus 186 ~fG~~~g~---~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~ 262 (536)
=||++.+. +...+..+.. ..-+..-+...+..++.+++. +...-.++...+.+.-+...-++...
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~-~~~~~~~l~~~~~~l~~~~gi-----------~~~~~iii~~~i~~~Yt~~GGl~av~ 180 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFF-TIYTSSGLVAGGKLFESTFGL-----------DYKTGLLIGALIIVIYTFFGGFLAVS 180 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCc-----------cHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99863222 1222221111 222222333444444544321 12222334444455566677888888
Q ss_pred HHHHHHHHHH
Q 009363 263 GVSLVGAITA 272 (536)
Q Consensus 263 ~~S~i~~~~~ 272 (536)
+...+-.+.+
T Consensus 181 ~TD~iQ~~i~ 190 (487)
T TIGR02121 181 WTDFVQGLLM 190 (487)
T ss_pred HHHHHHHHHH
Confidence 8776665433
No 77
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.69 E-value=0.014 Score=62.50 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=56.2
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhhhhh--hhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHh
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPVAFP--ILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~af~--~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~ 185 (536)
++|+.+.++-+.......+....+.+-.... .+++..+++.+++..++...-.-+......+ ...++.-++|.
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r-----~Gl~~~v~sR~ 79 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR-----TGLPTMVLSRA 79 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC-----C---HHHHTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc-----cCCCchhcchh
Confidence 3455555544444444444443333333221 2344445555554444443333333332222 24688899999
Q ss_pred hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHh
Q 009363 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQIT 226 (536)
Q Consensus 186 ~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~ 226 (536)
.||.++.++...+.. ....|=...-..+.++.+..+.+..
T Consensus 80 ~FG~~Gs~l~~~l~~-i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 80 SFGYRGSKLPSLLRA-ISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp TS-TTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999977666666643 4446655556677888888887754
No 78
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.52 E-value=0.063 Score=54.97 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHH-CchhhhcCCccccHHHHHHhhcch
Q 009363 111 NGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQ-LHENVETGMRYSRYLQLCGVTFGE 189 (536)
Q Consensus 111 ~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~-~~~~~~~g~~~~sY~~l~~~~fG~ 189 (536)
..+.+.-.-|=..++-|+|-+.=|-.-.+-||+++.+.+++-+++.----....- .+-+ ++-.+.++++++..||
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR----~~G~Si~~i~~~~lG~ 126 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVR----HKGKSIGEIAGKYLGK 126 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhc----CCCccHHHHHHHHHHH
Confidence 3455667777788999999999999889999999998887655444332221111 2222 2346999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhhH
Q 009363 190 KLAKWLAFLPLLQLSAGTCVALIIVGGTSMK 220 (536)
Q Consensus 190 ~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~ 220 (536)
+.+++...+..+.+ .-...++....++.+.
T Consensus 127 ~~~~lf~~f~~~~l-ilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 127 RAKKLFLIFIFFLL-ILVIAVFADVVANTFV 156 (376)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 88887777654444 5555566555555543
No 79
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.48 E-value=1.4 Score=46.08 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=43.8
Q ss_pred HHhhhcccccccchhhhhh-hhc--hHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHHHH
Q 009363 120 HTLCAGIGIQALVLPVAFP-ILG--WAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLA 196 (536)
Q Consensus 120 ~li~s~iG~GiLaLP~af~-~~G--~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~~ 196 (536)
.+..-.+|+|.|-.|-... +.| |.++.+..++.++..-..... .-. .. .-+|+++.++ +||+.+.+..
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~-~~---gG~~~~l~~~-~g~~f~~lf~ 73 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALA-LV---GGGYDSLSAR-IGKVFGILFT 73 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eee-ec---CCCHHHHHHH-hChHHHHHHH
Confidence 3445568999999886543 333 566666666666655544333 222 11 2489998886 5888887776
Q ss_pred HHH
Q 009363 197 FLP 199 (536)
Q Consensus 197 ~~~ 199 (536)
...
T Consensus 74 ~~~ 76 (378)
T TIGR00796 74 VIL 76 (378)
T ss_pred HHH
Confidence 653
No 80
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.42 E-value=1.5 Score=45.63 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=44.8
Q ss_pred ccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhcc--
Q 009363 177 SRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQ-- 254 (536)
Q Consensus 177 ~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~-- 254 (536)
.+..|..++-+|+++.+.......+. +....++-++-.+.-++.++. +....|.++.....+.+.+
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~-~~~~~~~~~~g~a~al~ll~g-----------~~~~~~~~~~~~~~~~ll~~~ 109 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLA-NIATQAAEIIGIAIALNLLFG-----------IPLWIWVLLVAVIAILLLWLS 109 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC-----------CCcHHHHHHHHHHHHHHHHHH
Confidence 47777788888887776665554332 244444444444444433321 2244555555554444444
Q ss_pred CCCcchhhHHHHHHHH
Q 009363 255 LPNLNSIAGVSLVGAI 270 (536)
Q Consensus 255 l~~l~~l~~~S~i~~~ 270 (536)
.++.+.+..+..+-+.
T Consensus 110 ~~~y~~~E~~~~~lv~ 125 (358)
T PF01566_consen 110 SGGYRRLERILKVLVA 125 (358)
T ss_pred hccchHHHHHHHHHHH
Confidence 6777777776554433
No 81
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=95.99 E-value=2.7 Score=44.64 Aligned_cols=332 Identities=15% Similarity=0.098 Sum_probs=149.6
Q ss_pred ChhHHHHHHhhhcccccccchhhhhh-hhc--hHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcch
Q 009363 113 NAYYAAFHTLCAGIGIQALVLPVAFP-ILG--WAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGE 189 (536)
Q Consensus 113 s~~~a~~~li~s~iG~GiLaLP~af~-~~G--~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~ 189 (536)
..+..-+.+..-..|+|-|-.|-..- ++| |.++.+.+++.++.-- +|.-.+.. .. ..++++++++. ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglP----lLgiiava-~~---~g~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLP----VLTVVALA-KV---GGGVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHh-hc---CCCHHHHhhhc-ch
Confidence 56677888888899999999997653 333 6666666665554322 22221111 01 13788888875 56
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCC--cchhhHHHHH
Q 009363 190 KLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPN--LNSIAGVSLV 267 (536)
Q Consensus 190 ~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~--l~~l~~~S~i 267 (536)
+.+.+...+ +++++|-+.+-=-...-..+--+..+.++ .......+.++|..+...+++-++ ++.+..+-.-
T Consensus 80 ~f~~~f~~~--i~l~IGP~~aiPRtaavsfEm~i~p~~~~----~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP 153 (439)
T PRK15433 80 VAGVLLATV--CYLAVGPLFATPRTATVSFEVGIAPLTGD----SALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAP 153 (439)
T ss_pred HHHHHHHHH--HHHHHhhccccCCccccchhheeeccCCc----ccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHH
Confidence 666655444 33445533211001111111000101100 011122334444444444553322 3333332222
Q ss_pred HHHHHHHHHHHhhhheeec--cCC--CCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhh-CCCCCCCCC
Q 009363 268 GAITAVGYCTIIWVVSVAK--GRL--PGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQAT-MPSSEKHPS 342 (536)
Q Consensus 268 ~~~~~v~~~~ii~~~~~~~--g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~-m~~~~k~ps 342 (536)
..+ ....++++.++.+ |.. +..+|.. ........+-.+-+.+++-++|+-. .+-.+.+. . ++++
T Consensus 154 ~LL---~~l~~lii~~i~~p~g~~~~~~~~y~~-~~f~~Gf~eGY~TMDalaal~Fg~i---ii~~i~~~G~----~~~~ 222 (439)
T PRK15433 154 LKI---IALVILSVAAIVWPAGSISTATEAYQN-AAFSNGFVNGYLTMDTLGAMVFGIV---IVNAARSRGV----TEAR 222 (439)
T ss_pred HHH---HHHHHHHHHHHhcCCCCCCCcchhhhh-hhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHcCC----CCHH
Confidence 222 1122222233332 221 1112310 0110001112355667777777643 22233332 3 2222
Q ss_pred cc--CcchhhHHHHHHHHHHHHHHHhHHhhh---cCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhc
Q 009363 343 TV--PMWKGVKFAYLIIATCLFPIAIGGYWA---YGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYG 417 (536)
Q Consensus 343 ~~--~~~~~v~~a~~i~~~~Y~~~gi~GY~~---fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~ 417 (536)
+. ...++-.++.....++|...+..|... +++..+++.++....+.. -.++...+..+.+.++++++-.-..
T Consensus 223 ~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~---~G~~G~~ll~iiv~lACLTTaIGLi 299 (439)
T PRK15433 223 LLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHT---FGGGGSFLLAALIFIACLVTAVGLT 299 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122334445666678888888888554 333223336665543211 1233344445556666666666665
Q ss_pred cchHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhh
Q 009363 418 MPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKV 488 (536)
Q Consensus 418 ~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~ 488 (536)
..+-+.+++.+. . .+.....+..++++.+|.. .++.+++ +.. .+.+++|...-+..
T Consensus 300 ~a~a~~f~~~~~----i-----sY~~~v~i~~l~S~~lSn~--G~~~II~----~s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 300 CACAEFFAQYVP----L-----SYRTLVFILGGFSMVVSNL--GLSQLIQ----ISVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHHHHHHHhhcC----C-----cHHHHHHHHHHHHHHHHHh--HHHHHHH----HHHHHHHHHhHHHHHHHH
Confidence 666666665432 1 1112222333334444322 3455555 445 77788887765544
No 82
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=95.60 E-value=3.8 Score=43.45 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=53.6
Q ss_pred CCCChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHHHHHHH----HHHHHHCchhhhcCCccccH-----
Q 009363 110 RNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFIWQLYT----LYILVQLHENVETGMRYSRY----- 179 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~~s~~s----~~lL~~~~~~~~~g~~~~sY----- 179 (536)
++-|-+++.+..+.+.+|.| ++++|-|.+..| -.++..+-+.+++..-+ +.+-.+..++ .+..+|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~----~~~g~~~GGP~ 119 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER----DADGVFRGGPM 119 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee----CCCCCEecChH
Confidence 34688999999999999998 999999977766 34544444444433333 3344444333 112235
Q ss_pred HHHHHhhcchhhhHHHHHH
Q 009363 180 LQLCGVTFGEKLAKWLAFL 198 (536)
Q Consensus 180 ~~l~~~~fG~~~g~~~~~~ 198 (536)
-.+-+...||+.+.+...+
T Consensus 120 yyi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHHhCccHHHHHHHHH
Confidence 6777777777666665555
No 83
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.11 E-value=5.7 Score=43.54 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=51.8
Q ss_pred ChhHHHHHHhhhccccc-ccchhhhhhhhchH----HHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 113 NAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWA----WGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 113 s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~----~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
|..+-++..++..+|.| +.-.|+-..+-|-. +=.++++++++=..+.=..+.|..+. ....-|++++...
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~----~~~~~~~~~~p~~- 80 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRS----GPIGAWKRLCPIF- 80 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----TSHHHS-HHHHHH-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccc-
Confidence 44567788889999998 78899986666532 22233333333333333444444333 2233455555432
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQI 225 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~ 225 (536)
+ .+...+.+. ++..++.|.++.+..+..+...
T Consensus 81 -~----giG~~~~~~-~~~~~~yy~vi~~w~l~Y~~~s 112 (523)
T PF00209_consen 81 -K----GIGYAMVLI-SFLIAIYYSVIVAWALYYFFQS 112 (523)
T ss_dssp -H----THHHH---H-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred -c----ccccccccc-cccccccccccccccccccccc
Confidence 1 122222222 2445566677777666665553
No 84
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.05 E-value=5.7 Score=42.19 Aligned_cols=179 Identities=13% Similarity=0.049 Sum_probs=90.1
Q ss_pred ccccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhcc
Q 009363 175 RYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQ 254 (536)
Q Consensus 175 ~~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~ 254 (536)
...|+.|....=|+.+-.|+++.+..+...+--.++-++-.|..+..+++-. ...=.++-+++++....
T Consensus 102 GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~-----------~~vgv~ig~ilm~~Yvv 170 (529)
T COG4147 102 GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP-----------YHVGVVIGGILMMVYVV 170 (529)
T ss_pred CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC-----------ceeehhhHhHHHHHHHH
Confidence 3689999888777766666666655444445556666666666666655421 11112333344445566
Q ss_pred CCCcchhhHHHHHHHHHH-HHHHHHhhhheee-ccCCC---------Cccc---CCCCCCccccchHHHHHHHHHHHHHH
Q 009363 255 LPNLNSIAGVSLVGAITA-VGYCTIIWVVSVA-KGRLP---------GVSY---NPVQTDKEGIVRAVDVLNALGIVAFA 320 (536)
Q Consensus 255 l~~l~~l~~~S~i~~~~~-v~~~~ii~~~~~~-~g~~~---------~~~~---~~~~~~~~~~~~~~~~~~~l~ii~fa 320 (536)
+.-++...|+..+=.+.. +.+.+..+..... .+.+. .... +..++... ..++.+++.-.=..++.
T Consensus 171 ~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~-~~~~i~~isl~~aLm~G 249 (529)
T COG4147 171 LGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLL-YKDPIDFISLGFALMVG 249 (529)
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCc-ccCHHHHHHHHHHHHHc
Confidence 788999999887765432 2222222211111 11110 0000 00011111 22223333333333343
Q ss_pred hcCCchHHHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhh
Q 009363 321 FRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWA 371 (536)
Q Consensus 321 f~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~ 371 (536)
..+ .|.+.-.-- .-|+.|.-+|.+.++..++..+|+..-+.|+.+
T Consensus 250 TAg---LPHil~RFf---Tvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 250 TAG---LPHILMRFF---TVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred cCC---CCeEEEEEE---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 232221110 113333334899999999999999877777654
No 85
>PRK00701 manganese transport protein MntH; Reviewed
Probab=94.81 E-value=6.9 Score=41.90 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=15.1
Q ss_pred ccHHHHHHhhcchhhhHHHH
Q 009363 177 SRYLQLCGVTFGEKLAKWLA 196 (536)
Q Consensus 177 ~sY~~l~~~~fG~~~g~~~~ 196 (536)
.+..|++++-||+++.+...
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~ 113 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLW 113 (439)
T ss_pred CCHHHHHHHHCCchHHHHHH
Confidence 47899999999986655443
No 86
>PRK15015 carbon starvation protein A; Provisional
Probab=94.26 E-value=0.64 Score=51.04 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=58.1
Q ss_pred hHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHH-CchhhhcCCccccHHHHHHhhcchhhhH
Q 009363 115 YYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQ-LHENVETGMRYSRYLQLCGVTFGEKLAK 193 (536)
Q Consensus 115 ~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~-~~~~~~~g~~~~sY~~l~~~~fG~~~g~ 193 (536)
+--.-|=..++-|+|-+.=|..-++.||+++.+.+++-.++.----.+..- ++.+ ++-.|..|++++..|++.+.
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R----~~GrSig~ia~~~iG~~~~~ 161 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTR----RDGRSLGELVKEEMGPTAGV 161 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeec----CCCccHHHHHHHHhhHHHHH
Confidence 345556678899999999999999999999999987655443322211111 2222 23469999999999998776
Q ss_pred HHHHHHHHH
Q 009363 194 WLAFLPLLQ 202 (536)
Q Consensus 194 ~~~~~~~~~ 202 (536)
.......+.
T Consensus 162 lfli~i~~i 170 (701)
T PRK15015 162 IALVACFMI 170 (701)
T ss_pred HHHHHHHHH
Confidence 665554333
No 87
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=92.56 E-value=12 Score=41.91 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=87.5
Q ss_pred CChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh-hhcCCccccHHHHHHhhcch
Q 009363 112 GNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN-VETGMRYSRYLQLCGVTFGE 189 (536)
Q Consensus 112 ~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~-~~~g~~~~sY~~l~~~~fG~ 189 (536)
|+......-.+-.+.|.= .+=|=|..-.+|...|.+++++|++.++.|..-+...+.. ..+. --+|--+.+ .+|+
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpa--GGsYfmISR-sLGP 191 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPA--GGSYFMISR-SLGP 191 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCeeEEEec-ccCc
Confidence 444444444445555542 3447788888999999999999999999988777765543 1111 125544444 4577
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHH-HHHHhh--C-C---CCCCCCC-CchhhHHHHHHHH--HhhccCCCcc
Q 009363 190 KLAKWLAFLPLLQLSAGTCVALIIVGGTSMKT-FYQITC--G-A---TCTSQPL-TTVEWYLVFTCAA--VVLSQLPNLN 259 (536)
Q Consensus 190 ~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~-l~~~~~--~-~---~~~~~~~-~~~~~~~i~~~~~--l~L~~l~~l~ 259 (536)
..|--+..+.++..-+. ...|++-.-+.+-. ++.... + + +..+..+ +.+.|-.++..+. +++.-.|-.+
T Consensus 192 EFGgAVGlcFYLgtT~A-aaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vn 270 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVA-AAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVN 270 (1075)
T ss_pred cccceeeehhhhhhHHH-HHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666554444222 23354433333222 222111 1 0 0000111 2334443333322 2344578888
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 009363 260 SIAGVSLVGAITAVGYCTI 278 (536)
Q Consensus 260 ~l~~~S~i~~~~~v~~~~i 278 (536)
+++.+++..++..+..+..
T Consensus 271 k~A~vfL~CVILSIlaiya 289 (1075)
T KOG2082|consen 271 KFAPVFLACVILSILAIYA 289 (1075)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 8998888888765544433
No 88
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=91.60 E-value=2.3 Score=45.86 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=60.4
Q ss_pred CChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHH-CchhhhcCCccccHHHHHHhhcchh
Q 009363 112 GNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQ-LHENVETGMRYSRYLQLCGVTFGEK 190 (536)
Q Consensus 112 ~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~-~~~~~~~g~~~~sY~~l~~~~fG~~ 190 (536)
.|.+...-|=..++-|+|-+.=|.--+|-||.+|.+.+++-+++.----..++- .+.+ ++-.|.++++++.+|++
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR----~~G~Si~~ia~~~lG~~ 127 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVR----HGGKSIGEIAGKYLGRT 127 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeec----cCCccHHHHHHHHhhhh
Confidence 455566677777899999999999999999999999987766554332222222 2222 23469999999999998
Q ss_pred hhHHHHHHH
Q 009363 191 LAKWLAFLP 199 (536)
Q Consensus 191 ~g~~~~~~~ 199 (536)
.+.+.....
T Consensus 128 a~~~~~~~~ 136 (575)
T COG1966 128 AKVFFLLLA 136 (575)
T ss_pred HHHHHHHHH
Confidence 777665554
No 89
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=91.27 E-value=22 Score=37.61 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCCChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHHHHHHH
Q 009363 110 RNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFIWQLYT 159 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~~s~~s 159 (536)
++-|-+++.+.-+.+.+|.| +.+..-|.+..|- .++.++-+++++..-+
T Consensus 17 g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmat 66 (416)
T PF01235_consen 17 GGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMAT 66 (416)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHH
Confidence 35688999999999999999 6668888876663 4666666665554443
No 90
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=89.15 E-value=11 Score=41.77 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHH
Q 009363 309 DVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGG 368 (536)
Q Consensus 309 ~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~G 368 (536)
++-..||+++-+-.|...=-..-.|+ |+|++. +.|....+....+++|.++.++-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgEL----k~PSkS-IP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGEL----KAPSKS-IPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccc----cCcccc-CCccchHHHHHHHHHHHHHHHHh
Confidence 45556666554444433322334555 999864 57999999999999999877653
No 91
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=87.88 E-value=36 Score=35.24 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=79.2
Q ss_pred CCCChhHHHHHHhhhcccc-cccchhhhhhhhchHHHHHHHHHHHH-HHHHHHHHHHH----CchhhhcCCccccHHHHH
Q 009363 110 RNGNAYYAAFHTLCAGIGI-QALVLPVAFPILGWAWGIIFLTLTFI-WQLYTLYILVQ----LHENVETGMRYSRYLQLC 183 (536)
Q Consensus 110 ~~~s~~~a~~~li~s~iG~-GiLaLP~af~~~G~~~giilli~~~~-~s~~s~~lL~~----~~~~~~~g~~~~sY~~l~ 183 (536)
|+.+-+--++....+-+|+ ..++=|-+--+.|+-| +++..+=+ ..+.+.-.+.+ .+++ ....|-.|+-
T Consensus 39 Rsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~----~nAltI~D~l 112 (473)
T COG4145 39 RSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILARE----YNALTINDLL 112 (473)
T ss_pred CcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHH----hCCeeHHHHH
Confidence 4444444445555555553 3555577777788765 33322222 22223333333 2233 4467888888
Q ss_pred HhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhH
Q 009363 184 GVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAG 263 (536)
Q Consensus 184 ~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~ 263 (536)
++=+-.+.-.+++.+..++...+.+++-.+-++..++...... ...-.+++...+..-.....++....
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gid-----------Y~tgL~ifa~~V~iYt~fGGFRAvvl 181 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGID-----------YTTGLLIFAVSVAIYTAFGGFRAVVL 181 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCC-----------chhhHHHHHHHHHHHHhhcceeeeeh
Confidence 8776444566666666666668888888888888777655431 23335666666666555556555554
Q ss_pred HH
Q 009363 264 VS 265 (536)
Q Consensus 264 ~S 265 (536)
.-
T Consensus 182 tD 183 (473)
T COG4145 182 TD 183 (473)
T ss_pred HH
Confidence 43
No 92
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=87.70 E-value=1.5 Score=47.62 Aligned_cols=103 Identities=12% Similarity=0.161 Sum_probs=66.0
Q ss_pred HHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhh--hcCCccccHHHHHHhhcchhhhH
Q 009363 116 YAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENV--ETGMRYSRYLQLCGVTFGEKLAK 193 (536)
Q Consensus 116 ~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~--~~g~~~~sY~~l~~~~fG~~~g~ 193 (536)
.+..|+.+-|+ .|=++|...|+|+..+++++.++..++..|..--.-..+++ +.| -.|--++ +.+|+..|-
T Consensus 39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G---g~yflis-~slg~efgg 111 (643)
T KOG2083|consen 39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG---GVYFLIS-RSLGPEFGG 111 (643)
T ss_pred hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC---cEEEEEE-ecccccccc
Confidence 44445444433 46789999999999999999988888888776554433331 112 1232222 245665555
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHh
Q 009363 194 WLAFLPLLQLSAGTCVALIIVGGTSMKTFYQIT 226 (536)
Q Consensus 194 ~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~ 226 (536)
-+.++..+.+ .-.|..|++-.++.+.++++..
T Consensus 112 sigiIy~f~~-aVa~am~~vgfaEsv~~l~~~~ 143 (643)
T KOG2083|consen 112 SIGIIYAFAN-AVATAMYVVGFAESVAHLFETE 143 (643)
T ss_pred hhHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhc
Confidence 5555543333 4446779999999999988864
No 93
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=86.20 E-value=6.2 Score=41.32 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=53.6
Q ss_pred ccccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhcc
Q 009363 175 RYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQ 254 (536)
Q Consensus 175 ~~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~ 254 (536)
+..-..+++++.||+.+++++... +...|++++++.+...+|.++++.. ..+.+.|.++++.+...++.
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~-v~lACLtT~iGli~~~a~~f~~~~~----------k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLI-ITLACLTTAVGLTTACSEYFHKLVP----------KLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHH
Confidence 355688999999999655555555 5777899999999998888777533 13466777776665555443
Q ss_pred CCCcchhhHHH
Q 009363 255 LPNLNSIAGVS 265 (536)
Q Consensus 255 l~~l~~l~~~S 265 (536)
. .++++-.++
T Consensus 322 ~-Gl~~Ii~~~ 331 (378)
T TIGR00796 322 L-GLTQIISIS 331 (378)
T ss_pred h-CHHHHHHHH
Confidence 2 455544433
No 94
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=86.06 E-value=53 Score=35.26 Aligned_cols=282 Identities=15% Similarity=0.093 Sum_probs=128.3
Q ss_pred CCChHHHhhhhccCCCCCCccccc-ccCCCChhHHHHHHhhhcccccccchhhhhhhhch--HHHHHHHHHHHHHHHHHH
Q 009363 84 LGSPIRKALKLTRLDPQDAWLPIT-ESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGW--AWGIIFLTLTFIWQLYTL 160 (536)
Q Consensus 84 ~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~--~~giilli~~~~~s~~s~ 160 (536)
...|+.+.+....+.++|- .|.+ ++|+=+++.-+.--....++++.--+.-..-++|+ .-+++.+.+.-.+ +.
T Consensus 28 ~~~~~~~s~~~~fL~N~DL-~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~---~~ 103 (572)
T KOG2466|consen 28 LKKPLGESLSESFLTNPDL-KPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF---TA 103 (572)
T ss_pred ecccccchhccccccCCCC-CcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH---HH
Confidence 3444444444434444443 3443 45566888777777777777777777767777774 3344333222221 22
Q ss_pred HHHHHCchhhhcCCc-cccHHHHHHhhcchh---hhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCC------C
Q 009363 161 YILVQLHENVETGMR-YSRYLQLCGVTFGEK---LAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGA------T 230 (536)
Q Consensus 161 ~lL~~~~~~~~~g~~-~~sY~~l~~~~fG~~---~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~------~ 230 (536)
..++-.. .+|.. +.++.-..|..||-. +..+...++-+.. +|.. .-++|+....+++....+ +
T Consensus 104 ~f~~lns---~~G~~yhIsFpv~sR~sFGiygS~~pIi~R~vma~vw-Yg~~---awiGgecV~lmL~si~~~~~hipnt 176 (572)
T KOG2466|consen 104 IFLVLNS---RPGSDYHISFPVLSRSSFGIYGSLWPIINRVVMACVW-YGVN---AWIGGECVQLMLKSIFKSFSHIPNT 176 (572)
T ss_pred HHHHHcc---CCCcccccceeeeeeeehhhhHhHHHHHHHHHHHHhh-hhhh---hhhhhhhHHHHHHHHhhhhhcCccc
Confidence 2222222 13322 457777777777753 2333333322222 3332 235566666666554432 1
Q ss_pred CCCCCCCchhhHHHH--HHHHHhhccCCCcchhhHHHHHHHHHHHH--HHHHhhhheeeccCCCCcccCCCCCCccccch
Q 009363 231 CTSQPLTTVEWYLVF--TCAAVVLSQLPNLNSIAGVSLVGAITAVG--YCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVR 306 (536)
Q Consensus 231 ~~~~~~~~~~~~~i~--~~~~l~L~~l~~l~~l~~~S~i~~~~~v~--~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~ 306 (536)
-.+...++.+|+..+ =++.+| +......+++++-....+.... +..+++...-.+|.- +...++. ..+. ...
T Consensus 177 l~~~~~tt~e~i~FfIFwv~s~~-~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G-~l~~~~s-t~~g-s~~ 252 (572)
T KOG2466|consen 177 LGKPGTTTYEFIGFFIFWVASLP-FYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLG-HLFDSKS-TVSG-SAH 252 (572)
T ss_pred cCCCCCchHHHHHHHHHHHHhhh-eeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCcc-ccccCCC-cccc-cch
Confidence 111223444554332 223333 2234445555543333332221 233333333333311 1111100 0011 222
Q ss_pred HHHHHHHHHHHHHHhc-CCchHHHHHhhCCCCCCCCCccCcchhhHH----HHHHHHHHHHHHHhHHhhhcCCCCCc-ch
Q 009363 307 AVDVLNALGIVAFAFR-GHNLSLEIQATMPSSEKHPSTVPMWKGVKF----AYLIIATCLFPIAIGGYWAYGQLIPS-GG 380 (536)
Q Consensus 307 ~~~~~~~l~ii~faf~-~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~----a~~i~~~~Y~~~gi~GY~~fG~~~~~-~~ 380 (536)
.|.+..++.-.+=.|. ...|.|..-+-- |+|.... -.-.+ .+.+..++=++++..+|..||.+.-+ -+
T Consensus 253 aWa~~~~i~~~~~~fstl~~N~pDFsRF~----ksp~a~~--~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pld 326 (572)
T KOG2466|consen 253 AWAFVRSIMSCIANFSTLIVNAPDFSRFA----KSPNAIW--WGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLD 326 (572)
T ss_pred hHHHHHHHHHHHhccchhhccCchhHhhc----CCCCccc--hhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHH
Confidence 3445544433332332 355667766666 6665433 22222 23333333344556678899987754 37
Q ss_pred hhHHHh
Q 009363 381 MLVALI 386 (536)
Q Consensus 381 Il~~l~ 386 (536)
+++++.
T Consensus 327 il~~~l 332 (572)
T KOG2466|consen 327 ILNQWL 332 (572)
T ss_pred HHHHHh
Confidence 777764
No 95
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=84.23 E-value=59 Score=34.24 Aligned_cols=124 Identities=18% Similarity=0.134 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhh---cCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHH
Q 009363 348 KGVKFAYLIIATCLFPIAIGGYWA---YGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDL 424 (536)
Q Consensus 348 ~~v~~a~~i~~~~Y~~~gi~GY~~---fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~l 424 (536)
++-.++-..-.++|...+..|-.. .++..+++.||....++- -. ..-..+..+.+.++++++-.-....+-|-+
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~--fG-~~G~~lL~~iv~lACLTTaiGLi~a~aefF 304 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHL--FG-SYGSILLGLIVFLACLTTAVGLIVACAEFF 304 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHH--hc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677888888888333 344334457776653211 00 111122334455555555555545555555
Q ss_pred HHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhh
Q 009363 425 ESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKV 488 (536)
Q Consensus 425 e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~ 488 (536)
.+... + ...-...+++.+.++++|.. .++.++. ++. .+.+++|...-+..
T Consensus 305 ~~~~p----~----~SY~~~v~if~i~sflvan~--GL~~Ii~----isvPvL~~iYPiaI~Lv~ 355 (431)
T COG1114 305 SKLVP----K----LSYKTWVIIFTLISFLVANL--GLEQIIK----ISVPVLTAIYPIAIALVL 355 (431)
T ss_pred HHhcc----c----ccHHHHHHHHHHHHHHHHHh--hHHHHHH----HHHHHHHHHhHHHHHHHH
Confidence 55332 1 11222223344455555533 3555555 456 78888888765544
No 96
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=81.75 E-value=74 Score=33.53 Aligned_cols=66 Identities=15% Similarity=0.021 Sum_probs=32.7
Q ss_pred HhhhcccccccchhhhhhhhchHH--HHHHHHHHHHHHHHHHHHHH-HCchhhhcCCccccHHHHHHhhcchhhhHHH
Q 009363 121 TLCAGIGIQALVLPVAFPILGWAW--GIIFLTLTFIWQLYTLYILV-QLHENVETGMRYSRYLQLCGVTFGEKLAKWL 195 (536)
Q Consensus 121 li~s~iG~GiLaLP~af~~~G~~~--giilli~~~~~s~~s~~lL~-~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~ 195 (536)
+..+-+|.|-++ +..+.|--. ..+..++.+.+..+....+. |.... + ..+-.|++++-+++ +.++.
T Consensus 13 va~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~v--T---g~~l~~~~r~~~~~-~~~~~ 81 (390)
T TIGR01197 13 MSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVV--T---GLDLAEVCREHYPK-VPRIT 81 (390)
T ss_pred HHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheee--c---CCCHHHHHHHHCCC-chHHH
Confidence 334456666554 223444322 33444444444444333332 22221 2 35789999999987 34443
No 97
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=80.30 E-value=1.1e+02 Score=34.47 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=56.6
Q ss_pred ChhHHHHHHhhhccccccc-chhhhhhhhch----HHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 113 NAYYAAFHTLCAGIGIQAL-VLPVAFPILGW----AWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 113 s~~~a~~~li~s~iG~GiL-aLP~af~~~G~----~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
|..+-.+..++-.+|-|-. =.|+..-+-|- ++=+++++++++=..|=-..+.+-+.+ .....+..++-..=
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~----g~v~~wrri~Pif~ 114 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ----GPVSVWRRICPIFK 114 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC----ChHHHHHHhChHhc
Confidence 6678889999999999844 49987655553 444445555554444444445554443 22344554444332
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHh
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQIT 226 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~ 226 (536)
|-.++..+... -..+-|.++++-.+..++..+
T Consensus 115 GvG~a~v~~~~-------~~~~Yy~viiaw~l~Yl~~sf 146 (629)
T KOG3660|consen 115 GVGWASVVISA-------LLAIYYIVILAWALYYLFSSF 146 (629)
T ss_pred CccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHc
Confidence 43222222211 124556666666666666544
No 98
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=78.33 E-value=99 Score=32.96 Aligned_cols=335 Identities=17% Similarity=0.177 Sum_probs=145.9
Q ss_pred cCCCChhHHHHHHhhhccccc-ccchhhhhhhhchHHHHHHHHHHHH---HHHHHHHHHHHCchhhhcCCccccHHH---
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWAWGIIFLTLTFI---WQLYTLYILVQLHENVETGMRYSRYLQ--- 181 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~~giilli~~~~---~s~~s~~lL~~~~~~~~~g~~~~sY~~--- 181 (536)
++.-|-+++.+.-+.+.+|+| +-+..-|.+-.|= .++.++=++++ .+-|.=-.|.+..+. .++ .-.|..
T Consensus 60 ~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~-kd~--~G~~~GGP~ 135 (452)
T COG1115 60 KGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRV-KDK--DGEYRGGPA 135 (452)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeE-eCC--CCCCcCChH
Confidence 445578999999999999999 4558888886663 34554444443 444444555555544 111 111211
Q ss_pred -HHHhhcchh-hhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHH-HHHHHHHhhccCCCc
Q 009363 182 -LCGVTFGEK-LAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYL-VFTCAAVVLSQLPNL 258 (536)
Q Consensus 182 -l~~~~fG~~-~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-i~~~~~l~L~~l~~l 258 (536)
--++-+|.| .+.+.+ +..+. .+|. +.-+-.-+.+.+.... .++...|+. +...++.-+....-+
T Consensus 136 yYi~kGl~~r~l~v~FA-~~li~-afg~-----i~n~vQ~NsIa~a~~~------af~~~~~~~gi~la~l~~~VI~GGi 202 (452)
T COG1115 136 YYIEKGLGMRWLAVLFA-FALIA-AFGF-----IGNGVQSNSIASALAN------AFGIPPLVTGIVLALLVALVIFGGI 202 (452)
T ss_pred HHHHhhcCCcHHHHHHH-HHHHH-HHHh-----hcchhhHHHHHHHHHH------hcCCcHHHHHHHHHHHHHHHHHcch
Confidence 122333322 222222 11111 1221 1111122222222110 111222332 222223335556788
Q ss_pred chhhHHHHHHHH-HHHHHHHHhhhheeec-cCCCCc----ccCCCCCCccccchHH------HHHHHHHHHHHHhc-CCc
Q 009363 259 NSIAGVSLVGAI-TAVGYCTIIWVVSVAK-GRLPGV----SYNPVQTDKEGIVRAV------DVLNALGIVAFAFR-GHN 325 (536)
Q Consensus 259 ~~l~~~S~i~~~-~~v~~~~ii~~~~~~~-g~~~~~----~~~~~~~~~~~~~~~~------~~~~~l~ii~faf~-~h~ 325 (536)
++++.++-.-+- +++.|+...++.-+.+ +..|+. -.+....... ..... .+.+.+.=-+||-+ |..
T Consensus 203 ~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa-~GG~~G~~v~~aI~~Gv~RGlfSNEAGmG 281 (452)
T COG1115 203 KRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAA-AGGFAGYTVAQAIRNGVKRGLFSNEAGMG 281 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhh-hhhhhhHHHHHHHHHHHHHHhhcccccCC
Confidence 888887776663 4445554433322222 111110 0000000000 00000 11222222345554 577
Q ss_pred hHHHHHhhCCCCCCCCCccCcchhhH--H-HHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHH
Q 009363 326 LSLEIQATMPSSEKHPSTVPMWKGVK--F-AYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTS 402 (536)
Q Consensus 326 ~v~~i~~~m~~~~k~ps~~~~~~~v~--~-a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~ 402 (536)
..|...++-+. +||.+.-++.... + .+++|.+--+.+=+.|-+..++..++ .-+.+ .++..+ -.++-..+..
T Consensus 282 sap~aaAaA~~--~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G-~~ltq-~A~~~~-~g~~G~~fv~ 356 (452)
T COG1115 282 SAPIAAAAAKT--DHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSG-AALTQ-AAFSSH-LGSWGSYFVA 356 (452)
T ss_pred cchhHHHhhcC--CCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCch-HHHHH-HHHHHh-cCccHHHHHH
Confidence 77777776532 6777655332222 2 44555555555555565555553233 22221 111111 1223333333
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHHHhh-ccchHHHHHHHhhhH
Q 009363 403 LFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVA-IPFLGSLAGLIGGIA 473 (536)
Q Consensus 403 l~~~i~ll~s~pl~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iAi~-vP~~~~v~~lvGa~~ 473 (536)
+.+.+-..++.--+.+=...++|.... +| +.....|...+....+-+.. .+.+..+.++..++.
T Consensus 357 i~l~lFafTTIlg~yyyge~~~~fl~~---~k----~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~glM 421 (452)
T COG1115 357 IALFLFAFTTILGWYYYGEKNIEFLFG---SK----KAILLYRLIVLAMVFLGAVLSLDLVWNLADLFMGLM 421 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---Cc----hHHHHHHHHHHHHHHHhccccHHHHHHHHHHhchHH
Confidence 333333333333333334445555331 11 45566777776666655543 344556666555443
No 99
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=77.37 E-value=18 Score=38.45 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=51.1
Q ss_pred cccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhc
Q 009363 176 YSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLS 253 (536)
Q Consensus 176 ~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~ 253 (536)
..-..+++++.||+ .|.++-.+.+...|+-++++.....+|.++++.+. .+.+.|.++++.+...++
T Consensus 260 ~~lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k----------isY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 260 AELLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFPK----------ISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cChHHHHHHHHHHHHHHH
Confidence 45688899999999 46555555567778999999999999999987662 346778877777666655
No 100
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=72.77 E-value=1.5e+02 Score=32.27 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHH--HHhhccCC
Q 009363 179 YLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCA--AVVLSQLP 256 (536)
Q Consensus 179 Y~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~l~L~~l~ 256 (536)
|+-++++.-|+ .|++++.+.++...+|. ..-+-+....+..-++...+- +-+...+.++..++ +..++...
T Consensus 164 ~pl~g~~~~g~-~g~~ID~l~i~a~~~Gv-atslGlg~~qi~~gl~~~~Gi-----~~~~~~~~~ii~~~~~i~~~S~~~ 236 (485)
T PF02028_consen 164 YPLLGDRINGP-LGKIIDILAIFATIFGV-ATSLGLGVPQISAGLSSLFGI-----PNTFGLQIIIIIVITVIFTISAVS 236 (485)
T ss_dssp HHHHHHHHHSH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTS-----SSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCcccCc-chhhhHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHcCC-----CCchHHHHHHHHHHHHHHHHHHHH
Confidence 55566665566 78899888877775554 444445555555555554421 11233333333322 22344455
Q ss_pred Ccch-hhHHHHHHHHHHHH
Q 009363 257 NLNS-IAGVSLVGAITAVG 274 (536)
Q Consensus 257 ~l~~-l~~~S~i~~~~~v~ 274 (536)
.+++ +++.|-+.+...+.
T Consensus 237 Gl~kGIk~LS~~n~~l~~~ 255 (485)
T PF02028_consen 237 GLDKGIKRLSNINVYLAFA 255 (485)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5533 66666665554443
No 101
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=67.15 E-value=13 Score=35.77 Aligned_cols=69 Identities=22% Similarity=0.400 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhccchHHHHHHH---------hhhHh-hhHhHhhHHhhHhhcCCC-C--C--chhHHHHHHHHHHHHHH
Q 009363 447 IYGFFMFFIAVAIPFLGSLAGLI---------GGIAL-PVTLAYPCFMWLKVKKPK-A--Y--GPIWWLNWVLGVLGIIL 511 (536)
Q Consensus 447 ~~~~~~~~iAi~vP~~~~v~~lv---------Ga~~~-~l~filP~l~~l~~~~~~-~--~--~~~~~~~~~li~~G~v~ 511 (536)
+.++.++++|..++.++.++..+ ||.++ .++++= |..+.+.. . . ...+|+-|+++++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 45566777888888877777665 88888 777765 44443321 1 1 12467778999999999
Q ss_pred HHHHHHHH
Q 009363 512 SVLVTASG 519 (536)
Q Consensus 512 ~v~gt~~s 519 (536)
.+-+++.=
T Consensus 237 ~lr~~i~Y 244 (262)
T KOG4812|consen 237 FLRGFINY 244 (262)
T ss_pred HHHHHHhH
Confidence 88887643
No 102
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=66.22 E-value=1.5e+02 Score=31.38 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=55.6
Q ss_pred cccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccC
Q 009363 176 YSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQL 255 (536)
Q Consensus 176 ~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l 255 (536)
..=..+..++.||+ .|.++-..++...|+-++++.+...+|..+++... ++...|..++..+.+.++.+
T Consensus 262 ~~IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~----------~SY~~~v~if~i~sflvan~ 330 (431)
T COG1114 262 GQILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK----------LSYKTWVIIFTLISFLVANL 330 (431)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHHHHHh
Confidence 34577888999999 56666666677778999999999999998887652 44778888888766655522
Q ss_pred CCcchhhHHH
Q 009363 256 PNLNSIAGVS 265 (536)
Q Consensus 256 ~~l~~l~~~S 265 (536)
.++++-..|
T Consensus 331 -GL~~Ii~is 339 (431)
T COG1114 331 -GLEQIIKIS 339 (431)
T ss_pred -hHHHHHHHH
Confidence 344443333
No 103
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=64.35 E-value=1e+02 Score=32.69 Aligned_cols=138 Identities=18% Similarity=0.145 Sum_probs=87.6
Q ss_pred hHHHHHHH-HHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHh
Q 009363 350 VKFAYLII-ATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLY 428 (536)
Q Consensus 350 v~~a~~i~-~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~le~~~ 428 (536)
+..+..+. .+-.++....++..|+.--+ +...++.+.. ++.+.+ .........+...+++...++++......+
T Consensus 227 ~~k~~~~~~~~~~vlyi~~~~~~~~~~~~--~~~~~il~~~--~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 227 VRKAILIGSLIALVLYILVGFFVFGCFGS--LVFGNILAAK--EQNISL-LSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccHHHHHHcc--CchHHH-HHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 44454444 44445678889999987544 4555554322 222222 234445555556889999889886655432
Q ss_pred h----------hcCCCCCCchhhHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhHh-hhHhHhhHHhhHhhcCCC
Q 009363 429 V----------RRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPF-LGSLAGLIGGIAL-PVTLAYPCFMWLKVKKPK 492 (536)
Q Consensus 429 ~----------~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~-~~~v~~lvGa~~~-~l~filP~l~~l~~~~~~ 492 (536)
. +...+......|..........+.+.+...|. +....+..|++.. ..+-++|.+++++-++..
T Consensus 302 gv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~ 377 (415)
T COG0814 302 GVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLI 377 (415)
T ss_pred CchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11111122343556666677778888888885 7778888898888 999999999999886643
No 104
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=62.17 E-value=2.2e+02 Score=31.61 Aligned_cols=35 Identities=20% Similarity=-0.001 Sum_probs=27.0
Q ss_pred cCCCChhHHHHHHhhhccccc-ccchhhhhhhhchH
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQ-ALVLPVAFPILGWA 143 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~G-iLaLP~af~~~G~~ 143 (536)
.|+.-++...+.|..+.+|++ ++++|---...|.-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~ 79 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQ 79 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHH
Confidence 456778888888888888875 88899777777754
No 105
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=50.79 E-value=18 Score=25.05 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhcCCCCC
Q 009363 349 GVKFAYLIIATCLFPIAIGGYWAYGQLIP 377 (536)
Q Consensus 349 ~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~ 377 (536)
+..+++.+.+++..+.|..-|.+||...+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 45567778888888888888999997544
No 106
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=50.73 E-value=3.5e+02 Score=29.12 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=30.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhcc--chHHHHHHHhhhHh-hhHh
Q 009363 437 PWWLRPLIRAIYGFFMFFIAVAIP--FLGSLAGLIGGIAL-PVTL 478 (536)
Q Consensus 437 ~~~~r~~~r~~~~~~~~~iAi~vP--~~~~v~~lvGa~~~-~l~f 478 (536)
+|.+|.+.|.+.++.++++++... +++.+.++.-.+-+ .+-|
T Consensus 355 ~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPF 399 (503)
T KOG1291|consen 355 PWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPF 399 (503)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhH
Confidence 466778889999999999998765 57777776555544 4433
No 107
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=48.35 E-value=19 Score=25.26 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhcCCCCC
Q 009363 348 KGVKFAYLIIATCLFPIAIGGYWAYGQLIP 377 (536)
Q Consensus 348 ~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~ 377 (536)
.+..+++.+.+++..+.|..-|.+||+-.+
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 566777788888888888888889997544
No 108
>CHL00020 psbN photosystem II protein N
Probab=46.61 E-value=17 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhcCCCCC
Q 009363 348 KGVKFAYLIIATCLFPIAIGGYWAYGQLIP 377 (536)
Q Consensus 348 ~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~ 377 (536)
.+..+++.+.+++..+.|..-|.+||+..+
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 355667777777777888888889997544
No 109
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=45.82 E-value=74 Score=29.19 Aligned_cols=86 Identities=8% Similarity=0.079 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHH
Q 009363 191 LAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAI 270 (536)
Q Consensus 191 ~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~ 270 (536)
+|.++..+.+...+++++..|..+.+..-........ ....|.+++.++--.+-.++.+.++.+-..+..+
T Consensus 68 ~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~Y---------G~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~ 138 (173)
T PF11085_consen 68 LGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPGILY---------GLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTL 138 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH---------HHHHHHHHHHHhcccccCChhhhhCchhHHHHHH
Confidence 6777777776777777777776655443222111111 1234444444322123356677777776777766
Q ss_pred HHHHHHHHhhhheee
Q 009363 271 TAVGYCTIIWVVSVA 285 (536)
Q Consensus 271 ~~v~~~~ii~~~~~~ 285 (536)
|....-.+.+.+++.
T Consensus 139 CiyiLyGlFIGYSIs 153 (173)
T PF11085_consen 139 CIYILYGLFIGYSIS 153 (173)
T ss_pred HHHHHHHHHhceeeh
Confidence 655544455566664
No 110
>PRK09928 choline transport protein BetT; Provisional
Probab=40.67 E-value=4.2e+02 Score=30.08 Aligned_cols=134 Identities=6% Similarity=-0.070 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHH
Q 009363 142 WAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKT 221 (536)
Q Consensus 142 ~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~ 221 (536)
.++...+++-.+++--++.++...-... ..+.-..+.+..-...+..-..--+.....+.+ +..+++...|....
T Consensus 358 lvPsl~~~~WfsIfGgsal~l~~~g~~~-l~~~~~~~~~~alf~~l~~lP~~~i~~~l~~il----~~iFfvTSaDS~s~ 432 (679)
T PRK09928 358 IIPFTFTLLWLSIFGNSALYEIIHGNAA-FAEEAMAHPERGFYSLLAQYPAFTFSASVATIT----GLLFYVTSADSGAL 432 (679)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHcCCcc-HHHHhhcchhhHHHHHHHhCcHHHHHHHHHHHH----HHHHHHhcchHHHH
Q ss_pred HHHHhhCCC----CCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHH-HHHHHHHHhh
Q 009363 222 FYQITCGAT----CTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAI-TAVGYCTIIW 280 (536)
Q Consensus 222 l~~~~~~~~----~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~-~~v~~~~ii~ 280 (536)
++.....+. .+...+.+..|.++.+.+.+.|.....++.++-.+.++.+ .+++...+++
T Consensus 433 Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alPf~~I~ll~~~ 496 (679)
T PRK09928 433 VLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMA 496 (679)
T ss_pred HHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
No 111
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=38.36 E-value=2.3e+02 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=46.6
Q ss_pred ccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhc
Q 009363 177 SRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLS 253 (536)
Q Consensus 177 ~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~ 253 (536)
.-.....++.+|+ +++++-.+.+..-|+-++++.....++.+++... .+.+.|..++..+.++++
T Consensus 265 ~il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----------isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 265 AILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----------LSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CcHHHHHHHHHHHHHHHH
Confidence 3456678889999 4555555556777899999999988888777543 336677777777666665
No 112
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=36.77 E-value=6.4e+02 Score=28.12 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=44.3
Q ss_pred hHHHHHHhhhccccc-ccchhhh-hhhhch---HHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcch
Q 009363 115 YYAAFHTLCAGIGIQ-ALVLPVA-FPILGW---AWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGE 189 (536)
Q Consensus 115 ~~a~~~li~s~iG~G-iLaLP~a-f~~~G~---~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~ 189 (536)
.+..+..+...++.| +--.||- +.+.|+ ++=++++++.|+=-.|-=.-|.|-++. ....-+..+|-..=|-
T Consensus 85 ~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~----g~~gvw~ri~P~l~Gi 160 (629)
T KOG3659|consen 85 TEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQ----GCIGVWRRIAPALKGI 160 (629)
T ss_pred HHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcc----cchhHHHHhCHHhcCC
Confidence 456666777777776 4457775 555665 556677777777777766666776655 2244566666654443
No 113
>PRK09950 putative transporter; Provisional
Probab=36.24 E-value=6.1e+02 Score=27.75 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=34.5
Q ss_pred CccccHHHHHHhhcchh----hhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhh
Q 009363 174 MRYSRYLQLCGVTFGEK----LAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITC 227 (536)
Q Consensus 174 ~~~~sY~~l~~~~fG~~----~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~ 227 (536)
++..+.++..+-.+|++ .|+.++.+.++...+|.+.+. =++...+..-++...
T Consensus 164 ~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSL-Glg~~qi~~gl~~l~ 220 (506)
T PRK09950 164 NKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISL-VVTAATFTRGLSALT 220 (506)
T ss_pred CCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHc
Confidence 44567888888778753 688999888887766655543 444445555555443
No 114
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=35.83 E-value=2.8e+02 Score=30.14 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhcch-hhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHH
Q 009363 144 WGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGE-KLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTF 222 (536)
Q Consensus 144 ~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~fG~-~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l 222 (536)
+.+.+++-.+++.-++.++-..-... ..+....+.++.....+.. ..++++..+. .-.+..+++...|.....
T Consensus 343 psl~~~~wf~ifGg~al~~~~~g~~~-~~~~~~~g~~~a~~~~l~~lP~~~i~~~~~-----lil~~~f~vTs~DS~~~~ 416 (485)
T PF02028_consen 343 PSLFCFLWFSIFGGYALYLQLSGAGD-LAAANEQGPEAALFAFLEQLPLSKILSILF-----LILIFIFFVTSADSATYV 416 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTSS--HHHHHHH-HHHHHHHHHHTSTTHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCchHHhhHhhhhhh-HHHHhhcchhhHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHhcccHHHHH
Confidence 34455556666666666655432211 0000122333333333322 1343333332 223556778888888887
Q ss_pred HHHhhCCC-CCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHH
Q 009363 223 YQITCGAT-CTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAI 270 (536)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~ 270 (536)
+.....+. .+...+.+..|.++.+.+.+.+.....++.++-++.++.+
T Consensus 417 la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~l 465 (485)
T PF02028_consen 417 LAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGL 465 (485)
T ss_dssp HHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77665432 2223445667888877776666556778888888877764
No 115
>PRK10263 DNA translocase FtsK; Provisional
Probab=35.75 E-value=7.8e+02 Score=30.31 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHhHHhhh
Q 009363 350 VKFAYLIIATCLFPIAIGGYWA 371 (536)
Q Consensus 350 v~~a~~i~~~~Y~~~gi~GY~~ 371 (536)
+...+++++.+|+.++++.|-.
T Consensus 25 ~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 3345566788888888888865
No 116
>PLN02680 carbon-monoxide oxygenase
Probab=34.33 E-value=4.4e+02 Score=25.57 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHH
Q 009363 306 RAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVAL 385 (536)
Q Consensus 306 ~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l 385 (536)
+|-.++..+|.+.+ .++..+ .++.. |.+++.+|.+....-...++..++|+..-..|.++.. + .|+
T Consensus 48 n~HPlLM~~Gfi~l--~geAIL--~yr~~------~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~---~-~nf 113 (232)
T PLN02680 48 NVHPVLMVIGLVLL--NGEAML--AYKTV------PGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKG---I-DNF 113 (232)
T ss_pred echHHHHHHHHHHH--HHHHHh--ccccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---c-ccc
Confidence 44456666665553 222222 24544 2334445778888888888888888876555555432 2 233
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccch
Q 009363 386 IAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPM 420 (536)
Q Consensus 386 ~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~ 420 (536)
+ +-..|+-..+-+++.++.+..+..+.+|.
T Consensus 114 y-----SlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 114 Y-----SLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred c-----cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2 23568888888888999999998888885
No 117
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=30.07 E-value=1.2e+02 Score=28.49 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=42.7
Q ss_pred HHHHHHhhhHh-hhHhHhhHHhhHhhcCCCCC----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009363 464 SLAGLIGGIAL-PVTLAYPCFMWLKVKKPKAY----------GPIWWLNWVLGVLGIILSVLVTASGIYVIAD 525 (536)
Q Consensus 464 ~v~~lvGa~~~-~l~filP~l~~l~~~~~~~~----------~~~~~~~~~li~~G~v~~v~gt~~si~~ii~ 525 (536)
...-+.|++.+ -+..++|+.+.+..++++-. +..-....+...+|++.++.+...+...+.+
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455678888 89999999999999886321 1222345666677777777777777766655
No 118
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=29.17 E-value=5.5e+02 Score=25.56 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHhhhHhHhhHHhhHhhcC
Q 009363 439 WLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKVKK 490 (536)
Q Consensus 439 ~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~~l~filP~l~~l~~~~ 490 (536)
++....-.++.+..+..-+..+..+.-.++.=+=.+.+.=.+=.++++|-+|
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~K 247 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKK 247 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecC
Confidence 4554444444444444434444544444443222222222333445555544
No 119
>TIGR00909 2A0306 amino acid transporter.
Probab=28.74 E-value=6.9e+02 Score=26.10 Aligned_cols=46 Identities=9% Similarity=-0.263 Sum_probs=31.7
Q ss_pred cHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHH
Q 009363 178 RYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQ 224 (536)
Q Consensus 178 sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~ 224 (536)
...++.++..|+.++.++... .+...++++.+.+...+..+..+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAG-AVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777777777655555554 4555588888888888877776654
No 120
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=26.22 E-value=7.6e+02 Score=25.74 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHhhhHhHhhH
Q 009363 440 LRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPC 482 (536)
Q Consensus 440 ~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~~l~filP~ 482 (536)
..+..-.+...+.++.++++|.+...++..=-....+.+.-|-
T Consensus 148 ~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~LAPf 190 (367)
T PF09971_consen 148 IEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITLIFLAPF 190 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHHHHHH
Confidence 3444445555566667778999987766654333333444443
No 121
>KOG2418 consensus Microtubule-associated protein TAU [Cytoskeleton]
Probab=24.81 E-value=1.5e+02 Score=30.50 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.8
Q ss_pred cccHHHHHHhhcc
Q 009363 176 YSRYLQLCGVTFG 188 (536)
Q Consensus 176 ~~sY~~l~~~~fG 188 (536)
..+|.+-++.-.|
T Consensus 350 KLDFk~~~qaKVG 362 (448)
T KOG2418|consen 350 KLDFKAAVQAKVG 362 (448)
T ss_pred ecchhhhhhhhcc
Confidence 3566666654333
No 122
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=24.65 E-value=6e+02 Score=24.79 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHH
Q 009363 306 RAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVAL 385 (536)
Q Consensus 306 ~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l 385 (536)
++-.++..+|.+.+ +....-+|+-- + +.+++.+|.+....=++.+...++|+..-..+-+...- .|+
T Consensus 56 nlHP~lMviGfI~l----~GeAiL~YR~~----r-~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i----~Nf 122 (245)
T KOG1619|consen 56 NLHPVLMVIGFIYL----QGEAILIYRVF----R-YTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGI----ANF 122 (245)
T ss_pred CcchHHHHHHHHHh----ccceeeeeehh----h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----cce
Confidence 34456666665544 34444455554 2 34455568888888888888888888887777665542 233
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccch
Q 009363 386 IAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPM 420 (536)
Q Consensus 386 ~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~ 420 (536)
+ +-..|+-..+-+++.++.+..|--+.+|.
T Consensus 123 y-----SLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 123 Y-----SLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred e-----eHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 23568888888889999999998888886
No 123
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.49 E-value=9.8e+02 Score=26.39 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=28.0
Q ss_pred ccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHH
Q 009363 177 SRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFY 223 (536)
Q Consensus 177 ~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~ 223 (536)
.-..++-..+.|+|+...+..+ ++...+..+++-++-.+.....+.
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l-~ii~~f~~gi~s~~a~SR~v~afa 370 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSL-IIIALFFMGISSLTASSRLVYAFA 370 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHH-HHHHHHHhhHHHHHHHHHHHhhhh
Confidence 4577777888899877444444 344446666666665555554443
No 124
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=23.84 E-value=4.6e+02 Score=23.67 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=49.7
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccch
Q 009363 343 TVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPM 420 (536)
Q Consensus 343 ~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~ 420 (536)
+++.+|.+....-...++..++|+..-..+-++.+. .|++ +-..|+-.++.+++.++.+..+..+.+|.
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~----~~fy-----SlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI----PNMY-----SLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC----Cccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344457788887777888888888776666554332 2332 23578888888899999999999998886
No 125
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.42 E-value=7.3e+02 Score=23.77 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccch
Q 009363 347 WKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPM 420 (536)
Q Consensus 347 ~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~ 420 (536)
+|.+....-...++..++|+..-..+-++.++ ++ .+++ +-..|+-..+-+++.++.+..+..+.+|.
T Consensus 57 ~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~-~~-~hfy-----SlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 57 LKLLHAVLHLLAFILAVIGLKAVFDSHNLAKP-PI-PNMY-----SLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC-Cccc-----chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46777777777788888886665555554432 22 2332 33568878888888899999988877774
No 126
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=20.73 E-value=7.3e+02 Score=27.27 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=44.5
Q ss_pred hhhHHHHHHhhhhhhHHHHHHhhCCC-CCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHHHHH
Q 009363 205 AGTCVALIIVGGTSMKTFYQITCGAT-CTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAI 270 (536)
Q Consensus 205 ~G~~v~yli~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i~~~ 270 (536)
...+..+.+...|....+++...... .+...+.+..|.++...+.+.+.+...++.+.-.+.++.+
T Consensus 412 ~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~al 478 (537)
T COG1292 412 LLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITAL 478 (537)
T ss_pred HHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 33467788889999998888665322 2224455667888777766666656668888877776653
Done!