Query 009363
Match_columns 536
No_of_seqs 240 out of 1334
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 2.9E-13 1E-17 142.9 25.0 360 108-493 6-380 (445)
2 3gia_A Uncharacterized protein 99.3 9.4E-10 3.2E-14 115.9 26.9 240 108-373 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.1 3.7E-08 1.3E-12 105.6 27.1 247 107-375 8-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.4 0.00019 6.4E-09 76.7 29.4 152 109-273 24-176 (501)
5 3dh4_A Sodium/glucose cotransp 97.7 0.026 9E-07 60.4 29.8 149 109-273 19-168 (530)
6 2xq2_A Sodium/glucose cotransp 97.7 0.0092 3.1E-07 64.9 25.3 148 109-272 48-196 (593)
7 2a65_A Leutaa, Na(+):neurotran 95.2 4 0.00014 43.2 31.2 212 113-334 10-268 (519)
8 2wsw_A BCCT family betaine/car 55.0 77 0.0026 33.1 11.2 48 177-226 179-227 (509)
9 4ain_A Glycine betaine transpo 38.6 3.7E+02 0.013 28.2 18.3 47 178-226 181-228 (539)
10 4ain_A Glycine betaine transpo 21.4 7.1E+02 0.024 26.0 13.4 64 207-270 420-487 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.57 E-value=2.9e-13 Score=142.93 Aligned_cols=360 Identities=15% Similarity=0.050 Sum_probs=196.1
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
++|+-+.++.++..+++++|+|++.+|...++.|.. +++..++.++........+.|...+ .+. .-.+.+..++.+
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~-~p~--~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFL-DPS--PGGSYAYARRCF 81 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCC--TTTHHHHHHHHS
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCC--CCCchhhHHhHc
Confidence 456789999999999999999999999998888874 7888888888888888888887665 322 335667788999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
||.++........+.. .....++....++.+...++... .++....+.+++..++ .+...+..+..+.++.+
T Consensus 82 G~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~in~~g~~~~~~~~~~ 153 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSYFFPILK------DPWVLTITCVVVLWIF-VLLNIVGPKMITRVQAV 153 (445)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCGGGG------SHHHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCcccc------ccHHHHHHHHHHHHHH-HHHHHhchHHHHHHHHH
Confidence 9998888877654443 33444555555555543322110 0010111111111111 12223556666666555
Q ss_pred HHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcc
Q 009363 268 GAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMW 347 (536)
Q Consensus 268 ~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~ 347 (536)
.....+...+++++..+....+... .+...+.. ...+.++..++...+|+|.|...+....+|+ |||++ +..
T Consensus 154 ~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip 225 (445)
T 3l1l_A 154 ATVLALIPIVGIAVFGWFWFRGETY-MAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVP 225 (445)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCCC-CCC-------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhc-ccccCccC--CccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-ccc
Confidence 5443332222222222222111111 01111110 2235678899999999999999999999999 88854 345
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhcCCCCC---cchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHH
Q 009363 348 KGVKFAYLIIATCLFPIAIGGYWAYGQLIP---SGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDL 424 (536)
Q Consensus 348 ~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~---~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~l 424 (536)
|++..+..++.++|++..+......+.+.. +....+.+.... .++...+..+...+..+.+.--..+..-+.+
T Consensus 226 ~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 301 (445)
T 3l1l_A 226 IATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH----CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988776666654321 112222221111 1223344455555555555444333333333
Q ss_pred HHHhh--------hcCCCCCCchhhHHHHHHHHHHHHHHHhhcc----chHHHHHHHhhhHhhhHhHhhHHhhHhhcCCC
Q 009363 425 ESLYV--------RRKKKPCPWWLRPLIRAIYGFFMFFIAVAIP----FLGSLAGLIGGIALPVTLAYPCFMWLKVKKPK 492 (536)
Q Consensus 425 e~~~~--------~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP----~~~~v~~lvGa~~~~l~filP~l~~l~~~~~~ 492 (536)
...-. .+.++ .....+..+-...+.....+....| .++.+.++.+ ++..+.|.++++.+++.++++
T Consensus 302 ~~~a~dg~lP~~~~~~~~-~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 302 KAAADDGLFPPIFARVNK-AGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV-IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHHHTTSSCGGGGCCCT-TCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCCcHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 22111 11111 1112222221111111111111223 2444544433 233788999999988888765
Q ss_pred C
Q 009363 493 A 493 (536)
Q Consensus 493 ~ 493 (536)
+
T Consensus 380 ~ 380 (445)
T 3l1l_A 380 F 380 (445)
T ss_dssp S
T ss_pred c
Confidence 4
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.28 E-value=9.4e-10 Score=115.92 Aligned_cols=240 Identities=9% Similarity=0.034 Sum_probs=145.6
Q ss_pred ccCCCChhHHHHHHhhhcccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhh
Q 009363 108 ESRNGNAYYAAFHTLCAGIGIQALVLPV-AFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVT 186 (536)
Q Consensus 108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~-af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~ 186 (536)
++|+-+.++..+..+++++|+|++.+|. +.+..|- ..++..++.+++.......+.|...+ .+. .-..-+.+++.
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~-~P~--~Gg~y~~~~~~ 79 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAK-IVS--NAGPIAFIHKA 79 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTT-CCC--TTTHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCC--CCcHHHhHHHH
Confidence 4677899999999999999999998874 4556666 57788888888888888888887665 222 23456778889
Q ss_pred cchhh-hHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHH---HHhhccCCCcchhh
Q 009363 187 FGEKL-AKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCA---AVVLSQLPNLNSIA 262 (536)
Q Consensus 187 fG~~~-g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---~l~L~~l~~l~~l~ 262 (536)
+|+++ +.++.....+.. ...+..+....++.+..+++. . ....|..+...+ ++.+...+..+..+
T Consensus 80 ~G~~~~~g~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~in~~g~~~~~ 148 (444)
T 3gia_A 80 IGDNIITGALSILLWMSY-VISIALFAKGFAGYFLPLINA-----P-----INTFNIAITEIGIVAFFTALNFFGSKAVG 148 (444)
T ss_dssp HCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTC-----C-----CCHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC-----C-----CchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99863 333333322222 333444555555555543321 0 112221111111 11122245556666
Q ss_pred HHHHHHHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCC
Q 009363 263 GVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPS 342 (536)
Q Consensus 263 ~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps 342 (536)
.++.+.....+...+++++..+....++ ++.+ ... ...+.+++.++...+|+|.|...+....+|+ |||+
T Consensus 149 ~~~~~~~~~~i~~~~~~ii~~~~~~~~~--~~~~--~~~--~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~ 218 (444)
T 3gia_A 149 RAEFFIVLVKLLILGLFIFAGLITIHPS--YVIP--DLA--PSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPK 218 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCGG--GTSC--CCS--HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChh--hcCC--CCC--CcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCcc
Confidence 6555544332222222212222111111 1111 111 3345678889999999999999999999999 8886
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhHHhhhcC
Q 009363 343 TVPMWKGVKFAYLIIATCLFPIAIGGYWAYG 373 (536)
Q Consensus 343 ~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG 373 (536)
+ ...|++..+..++.++|+...+......+
T Consensus 219 r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 219 K-NVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 34589999999999999988776555544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.07 E-value=3.7e-08 Score=105.56 Aligned_cols=247 Identities=11% Similarity=0.037 Sum_probs=125.8
Q ss_pred cccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHH-HHHHHHHHHCch--hhhcCCccccHHHHH
Q 009363 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQ-LYTLYILVQLHE--NVETGMRYSRYLQLC 183 (536)
Q Consensus 107 ~~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s-~~s~~lL~~~~~--~~~~g~~~~sY~~l~ 183 (536)
+.+|+-+.++.++..++.++| +.++|. .+..|.. .++..++.+++. ......+.|... . .+ .-..-..+
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~-~P---~GG~y~~~ 79 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDG-WE---EGGVFAWV 79 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSC-C------CHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccccc-CC---CCChhhhH
Confidence 345778999999999999986 566775 4666753 333333333333 235666677655 4 22 23555678
Q ss_pred HhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhH
Q 009363 184 GVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAG 263 (536)
Q Consensus 184 ~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~ 263 (536)
++.+|++++........+.. .....++....++.+..++. .+......+....+.+++..++..+. .+..+....
T Consensus 80 ~~~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~in-~~g~~~~~~ 154 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYLQI-AIGFIPMLYFVLGALSYILK---WPALNEDPITKTIAALIILWALALTQ-FGGTKYTAR 154 (511)
T ss_dssp HHHHCHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTTTT---CGGGTSCSSHHHHHHHHHHHHHHHHH-HTCSSSHHH
T ss_pred HhhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc---CcccccCcHHHHHHHHHHHHHHHHHH-HhChHHHHH
Confidence 88999988876665543332 33333444444444432210 11111111111112222222222222 344444444
Q ss_pred HHHHHHHH-H---HHHHHHhhhheeeccCCCC--cccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCC
Q 009363 264 VSLVGAIT-A---VGYCTIIWVVSVAKGRLPG--VSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSS 337 (536)
Q Consensus 264 ~S~i~~~~-~---v~~~~ii~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~ 337 (536)
++.+.... . +...++........+.+.+ .+.+...++ . ...+...++...+|+|.|...+....+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~a~~G~e~~~~~a~E~--- 227 (511)
T 4djk_A 155 IAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPD---F-SKVGTLVVFVAFILSYMGVEASATHVNEM--- 227 (511)
T ss_dssp HTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCC---T-TSTTTTTTHHHHHHHHTTGGGGTGGGSSS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCC---c-ccchHHHHHHHHHHHHhhHHHHHHHHHhc---
Confidence 44443221 1 1111111111111221111 111111111 1 01123345778899999999999999999
Q ss_pred CCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCC
Q 009363 338 EKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQL 375 (536)
Q Consensus 338 ~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~ 375 (536)
|||++ ...|++..++.++.++|++..+.-....+++
T Consensus 228 -k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 228 -SNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp -SCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred -cCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 88864 4569999999999999999888776666654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.41 E-value=0.00019 Score=76.65 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=90.6
Q ss_pred cCCCChhHHHHHHhhhcccccccchhhhhh-hhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGIQALVLPVAFP-ILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~GiLaLP~af~-~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
+|+.++++-+..-++..++.+...+...+. ..++..+++.+++..++...-+.++.....+ . ..+|..+.|..|
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~--~---Gl~~~v~~R~~F 98 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIR--W---GINFTVAARMPF 98 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH--H---CCCHHHHTTTTS
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh--c---CCChhhhhHhhc
Confidence 455676666666666666655555543333 3445556666665555554444444443333 2 356999999999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
|+++.++...+..+. ++|-...-....++.+..++....+. . ....+++++.++.+++. ...++.++++..+
T Consensus 99 G~~Gs~i~~ll~~i~-~igw~~v~~~~gg~al~~~~~~~~g~----~--~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~ 170 (501)
T 2jln_A 99 GIRGSLIPITLKALL-SLFWFGFQTWLGALALDEITRLLTGF----T--NLPLWIVIFGAIQVVTT-FYGITFIRWMNVF 170 (501)
T ss_dssp CTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCC----C--CHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCc----c--hHHHHHHHHHHHHHHHH-HhCHHHHHHHHHH
Confidence 998888777665444 46666666677888888877644321 0 12344555555555555 4567777777766
Q ss_pred HHHHHH
Q 009363 268 GAITAV 273 (536)
Q Consensus 268 ~~~~~v 273 (536)
.....+
T Consensus 171 ~~p~~~ 176 (501)
T 2jln_A 171 ASPVLL 176 (501)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.74 E-value=0.026 Score=60.41 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=77.3
Q ss_pred cCCCChhHHHHHHhhhcccc-cccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGI-QALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~-GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
.|+.+++...+.+..+.+++ ..+++|-.....|+......... ++......+.+....++ .+..|+.|.-++-|
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~----~~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE----KGIYTIPEFVEKRF 93 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH----TTCCSHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH----cCCccHHHHHHHHc
Confidence 46778999999998888886 47888887777786432111111 11111112222332333 45789999999999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
|++.+.+...+..+...+..+.+-+...+..++.+++ ++...-+++...+++..+...-++...+...+
T Consensus 94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-----------i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~i 162 (530)
T 3dh4_A 94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-----------IPLMYSILGLALFALVYSIYGGLSAVVWTDVI 162 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHTTC------CCSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9976666555433222122222222333434443322 11222233444444566777888888887766
Q ss_pred HHHHHH
Q 009363 268 GAITAV 273 (536)
Q Consensus 268 ~~~~~v 273 (536)
-.+.++
T Consensus 163 Q~~im~ 168 (530)
T 3dh4_A 163 QVFFLV 168 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.67 E-value=0.0092 Score=64.89 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=74.4
Q ss_pred cCCCChhHHHHHHhhhcccc-cccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363 109 SRNGNAYYAAFHTLCAGIGI-QALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF 187 (536)
Q Consensus 109 ~~~~s~~~a~~~li~s~iG~-GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f 187 (536)
.|+.+++...+.+..+.+++ ..++.|-...+.|+......... .+......+.+..-.++ .+..|..|.-++=|
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r----~~~~T~~e~l~~Rf 122 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE----KGIYTIPEFVEKRF 122 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH----TTCCSHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh----CCCCCcHHHHHHHc
Confidence 46678888888888777776 46788877777786422111110 10011112222332233 34789999999999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363 188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV 267 (536)
Q Consensus 188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i 267 (536)
|++.+.+...+..+...+.....-+...+..++.+++ ++...-.++...+++..+...-++...+...+
T Consensus 123 g~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-----------i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~i 191 (593)
T 2xq2_A 123 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-----------IPLMYSILGLALFALVYSIYGGLSAVVWTDVI 191 (593)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHTTC---CCHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9876665554433222122222222334444554432 11222233344444556667777777776665
Q ss_pred HHHHH
Q 009363 268 GAITA 272 (536)
Q Consensus 268 ~~~~~ 272 (536)
-.+.+
T Consensus 192 Q~iim 196 (593)
T 2xq2_A 192 QVFFL 196 (593)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.15 E-value=4 Score=43.16 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=103.9
Q ss_pred ChhHHHHHHhhhccccc-ccchhhhhhhhc----hHHHHHHHHHHHHHHHHHHHHHHH----CchhhhcCCccccHHHHH
Q 009363 113 NAYYAAFHTLCAGIGIQ-ALVLPVAFPILG----WAWGIIFLTLTFIWQLYTLYILVQ----LHENVETGMRYSRYLQLC 183 (536)
Q Consensus 113 s~~~a~~~li~s~iG~G-iLaLP~af~~~G----~~~giilli~~~~~s~~s~~lL~~----~~~~~~~g~~~~sY~~l~ 183 (536)
|-.+-++..+.+.+|.| +.=.||-..+-| +++=+++++++++=-.+.=..+.| ..+. .....|.+++
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~----~~i~a~~~l~ 85 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG----TTPAIFYLLW 85 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCC----SHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCC----CHHHHHHHhc
Confidence 45677888889999999 778999887777 344444445555444444445555 2222 1233455554
Q ss_pred HhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCC------CCC----------------------CCC
Q 009363 184 GVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGA------TCT----------------------SQP 235 (536)
Q Consensus 184 ~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~------~~~----------------------~~~ 235 (536)
.+ +..+.+....++. ++..++-|.++.+-.+..++....++ .|. ...
T Consensus 86 ~~----~~~~giG~~~v~~-~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~ 160 (519)
T 2a65_A 86 RN----RFAKILGVFGLWI-PLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEP 160 (519)
T ss_dssp CS----HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSC
T ss_pred CC----cCCchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCccc
Confidence 22 1123333333222 24455666666666666555544321 010 000
Q ss_pred CCchhhHHH-HHHH---HHhhccCCCc-chhhHHHHHHHHHHHHHHHHhhhheee-cc----CCCCcccCCCCCCccccc
Q 009363 236 LTTVEWYLV-FTCA---AVVLSQLPNL-NSIAGVSLVGAITAVGYCTIIWVVSVA-KG----RLPGVSYNPVQTDKEGIV 305 (536)
Q Consensus 236 ~~~~~~~~i-~~~~---~l~L~~l~~l-~~l~~~S~i~~~~~v~~~~ii~~~~~~-~g----~~~~~~~~~~~~~~~~~~ 305 (536)
.....|-++ ...+ +..++..|-+ +....++.+-+...++..++++++++. .| ..++.++--.++++. ..
T Consensus 161 ~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~-L~ 239 (519)
T 2a65_A 161 ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEK-LK 239 (519)
T ss_dssp BCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTS-TT
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHH-hC
Confidence 001113221 1111 1225556777 556666666654444334444444432 23 222222110011111 22
Q ss_pred hHHHHHHHHHHHHHHhcCCchHHHHHhhC
Q 009363 306 RAVDVLNALGIVAFAFRGHNLSLEIQATM 334 (536)
Q Consensus 306 ~~~~~~~~l~ii~faf~~h~~v~~i~~~m 334 (536)
+..-+..+.+.+.|+...-.-..-.+.+-
T Consensus 240 ~~~vw~~A~gQ~FFSLslG~G~~ity~SY 268 (519)
T 2a65_A 240 DPGVWIAAVGQIFFTLSLGFGAIITYASY 268 (519)
T ss_dssp CHHHHHHHHHHHHHHHTTTSSHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHHHHhHHhhhhcc
Confidence 33467899999999999654444445543
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=54.96 E-value=77 Score=33.11 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=31.1
Q ss_pred ccHHHHH-HhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHh
Q 009363 177 SRYLQLC-GVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQIT 226 (536)
Q Consensus 177 ~sY~~l~-~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~ 226 (536)
.=|+-++ ++..|+ .|+.++.+.++.+.+|.+.+.= ++...+..-++..
T Consensus 179 ~l~PllG~~r~~G~-~G~~IDilav~at~~G~atsLG-lg~~qi~~Gl~~l 227 (509)
T 2wsw_A 179 TLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTSLG-LATPLVTECIQYL 227 (509)
T ss_dssp GCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3477777 677777 7999999988888788766543 3333344433333
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=38.63 E-value=3.7e+02 Score=28.17 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=30.6
Q ss_pred cHHHHHHh-hcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHh
Q 009363 178 RYLQLCGV-TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQIT 226 (536)
Q Consensus 178 sY~~l~~~-~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~ 226 (536)
=|+=++++ ..|+ .|+.++.+.++.+.+|...+.= ++...+..-++..
T Consensus 181 l~PllG~r~~~G~-~G~~IDilav~atv~GvatSLG-lg~~Qi~~Gl~~l 228 (539)
T 4ain_A 181 FVPLIGEKGAEGW-LGKLIDILAIIATVFGTACSLG-LGALQIGAGLSAA 228 (539)
T ss_dssp GHHHHHHHHTTSH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hHhhcCCCccCCc-chhhhHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHh
Confidence 36677776 6777 7999999988888777766543 3334444444433
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=21.36 E-value=7.1e+02 Score=25.96 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=42.4
Q ss_pred hHHHHHHhhhhhhHHHHHHhhCC-CCCCCCCCchhhHHHHHHHHHhhccCCC---cchhhHHHHHHHH
Q 009363 207 TCVALIIVGGTSMKTFYQITCGA-TCTSQPLTTVEWYLVFTCAAVVLSQLPN---LNSIAGVSLVGAI 270 (536)
Q Consensus 207 ~~v~yli~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~l~L~~l~~---l~~l~~~S~i~~~ 270 (536)
.++.|++..+|....++.....+ +.+...+.+..|.++.+.+.+.|..... ++.++-.+.++.+
T Consensus 420 li~~FfvTSaDS~s~vl~~~ss~g~~~p~~~~rifWgv~~g~va~~LL~~GG~~~L~aLQt~~ii~al 487 (539)
T 4ain_A 420 LLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAAT 487 (539)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHh
Confidence 35678899999999988876532 1122334566788887777666655555 8888877776654
Done!