BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009366
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/519 (34%), Positives = 265/519 (51%), Gaps = 65/519 (12%)
Query: 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT-HTVEYKALLSYPVHAS---- 124
+ S+LR T PHLAGTE + + +Q+ +++ ++ V Y LLSYP +
Sbjct: 26 NIKSFLRSFTKLPHLAGTEQNFLLAKKIQTQWKKFGLDSAKLVHYDVLLSYPNETNANYI 85
Query: 125 --VSAHFSN-GTTVELSLTEKGISQNAILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYR 181
V H + T L G + ++V PY+A+S G G +V+VNY R ED+
Sbjct: 86 SIVDEHETEIFKTSYLEPPPDGYEN--VTNIVPPYNAFSAQGMPEGDLVYVNYARTEDFF 143
Query: 182 ALE-AAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAE--------------- 225
LE G+N +G +V+AR G + R + A GAIG++LY++
Sbjct: 144 KLEREMGINCTGKIVIARYGKIF-RGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKG 202
Query: 226 WDRLRGGGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFEN 283
W+ L G +RG V+ G GDPL+PG+ E LD+E+ P+IP P+ + +
Sbjct: 203 WN-LPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEG---VGIPRIPVHPIGYND 258
Query: 284 AQIILGSL---------WGGFVTQFLNDLXXXXXXXXXXXXTMVNLTFQGKKKVATIHNV 334
A+I+L L W G + V + K+ I+NV
Sbjct: 259 AEILLRYLGGIAPPDKSWKGALNV---SYSIGPGFTGSDSFRKVRMHVYNINKITRIYNV 315
Query: 335 FAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIF 394
IRG EP+RYV+LG HRD+W +GAIDP SG A L +IAR + LM GW PRRTIIF
Sbjct: 316 VGTIRGSVEPDRYVILGGHRDSWVFGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIF 375
Query: 395 CSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP-GFFAGATPQLDDILIEVT 453
SWDAEEFG++GSTEW EEN+ L +++AY+N D +++G TP L ++ ++T
Sbjct: 376 ASWDAEEFGLLGSTEWAEENVKILQERSIAYINSDSSIEGNYTLRVDCTPLLYQLVYKLT 435
Query: 454 KMVKDPES--ESGTLYDQW-----SAPNRIFNIQRLG--GVDSDFASFVQHAGVPSVDMY 504
K + P+ ES +LY+ W S N+ N+ R+ G SDF ++ Q G+ S
Sbjct: 436 KEIPSPDDGFESKSLYESWLEKDPSPENK--NLPRINKLGSGSDFEAYFQRLGIASGRAR 493
Query: 505 YGKD--------FPVYHTALDTYTWIVGHADPLFHRHVA 535
Y K+ +PVYHT +T+ + DP F + ++
Sbjct: 494 YTKNKKTDKYSSYPVYHTIYETFELVEKFYDPTFKKQLS 532
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 266/531 (50%), Gaps = 59/531 (11%)
Query: 54 TALHFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT-HTVE 112
T H K FL + +L + T PHLAGTE + + +QS +++ ++
Sbjct: 42 TPKHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAH 101
Query: 113 YKALLSYP--VHAS-VSAHFSNGTTV-ELSLTEKGI-SQNAILDVVQPYHAYSPSGSAYG 167
Y LLSYP H + +S +G + SL E + D+V P+ A+SP G G
Sbjct: 102 YDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEG 161
Query: 168 KVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAE- 225
+V+VNY R ED+ LE +N SG +V+AR G V R + A+ GA GV+LY++
Sbjct: 162 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVF-RGNKVKNAQLAGAKGVILYSDP 220
Query: 226 --------------WDRLRGGGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSK 269
W+ L GGGV+RG ++ G GDPL+PG+ E + ++
Sbjct: 221 ADYFAPGVKSYPDGWN-LPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEA---V 276
Query: 270 RFPKIPSLPLSFENAQIILGSL---------WGGFVTQFLNDLXXXXXXXXXXXXTMVNL 320
P IP P+ + +AQ +L + W G + N V +
Sbjct: 277 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYN---VGPGFTGNFSTQKVKM 333
Query: 321 TFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYAL 380
+V I+NV +RG EP+RYV+LG HRD+W +G IDP SG A + +I R +
Sbjct: 334 HIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGT 393
Query: 381 LMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP-GFFA 439
L + GW PRRTI+F SWDAEEFG++GSTEW EEN L + VAY+N D +++G
Sbjct: 394 LKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRV 453
Query: 440 GATPQLDDILIEVTKMVKDPES--ESGTLYDQWS--APNRIFN----IQRLGGVDSDFAS 491
TP + ++ +TK +K P+ E +LY+ W+ +P+ F+ I +LG +DF
Sbjct: 454 DCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGS-GNDFEV 512
Query: 492 FVQHAGVPSVDMYYGKD--------FPVYHTALDTYTWIVGHADPLFHRHV 534
F Q G+ S Y K+ +P+YH+ +TY + DP+F H+
Sbjct: 513 FFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHL 563
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 266/531 (50%), Gaps = 59/531 (11%)
Query: 54 TALHFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT-HTVE 112
T H K FL + +L + T PHLAGTE + + +QS +++ ++
Sbjct: 12 TPKHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAH 71
Query: 113 YKALLSYP--VHAS-VSAHFSNGTTV-ELSLTEKGI-SQNAILDVVQPYHAYSPSGSAYG 167
Y LLSYP H + +S +G + SL E + D+V P+ A+SP G G
Sbjct: 72 YDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEG 131
Query: 168 KVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAE- 225
+V+VNY R ED+ LE +N SG +V+AR G V R + A+ GA GV+LY++
Sbjct: 132 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVF-RGNKVKNAQLAGAKGVILYSDP 190
Query: 226 --------------WDRLRGGGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSK 269
W+ L GGGV+RG ++ G GDPL+PG+ E + ++
Sbjct: 191 ADYFAPGVKSYPDGWN-LPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEA---V 246
Query: 270 RFPKIPSLPLSFENAQIILGSL---------WGGFVTQFLNDLXXXXXXXXXXXXTMVNL 320
P IP P+ + +AQ +L + W G + N V +
Sbjct: 247 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYN---VGPGFTGNFSTQKVKM 303
Query: 321 TFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYAL 380
+V I+NV +RG EP+RYV+LG HRD+W +G IDP SG A + +I R +
Sbjct: 304 HIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGT 363
Query: 381 LMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP-GFFA 439
L + GW PRRTI+F SWDAEEFG++GSTEW EEN L + VAY+N D +++G
Sbjct: 364 LKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRV 423
Query: 440 GATPQLDDILIEVTKMVKDPES--ESGTLYDQWS--APNRIFN----IQRLGGVDSDFAS 491
TP + ++ +TK +K P+ E +LY+ W+ +P+ F+ I +LG +DF
Sbjct: 424 DCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGS-GNDFEV 482
Query: 492 FVQHAGVPSVDMYYGKD--------FPVYHTALDTYTWIVGHADPLFHRHV 534
F Q G+ S Y K+ +P+YH+ +TY + DP+F H+
Sbjct: 483 FFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHL 533
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 266/531 (50%), Gaps = 59/531 (11%)
Query: 54 TALHFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT-HTVE 112
T H K FL + +L + T PHLAGTE + + +QS +++ ++
Sbjct: 12 TPKHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAH 71
Query: 113 YKALLSYP--VHAS-VSAHFSNGTTV-ELSLTEKGI-SQNAILDVVQPYHAYSPSGSAYG 167
Y LLSYP H + +S +G + SL E + D+V P+ A+SP G G
Sbjct: 72 YDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEG 131
Query: 168 KVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAE- 225
+V+VNY R ED+ LE +N SG +V+AR G V R + A+ GA GV+LY++
Sbjct: 132 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVF-RGNKVKNAQLAGAKGVILYSDP 190
Query: 226 --------------WDRLRGGGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSK 269
W+ L GGGV+RG ++ G GDPL+PG+ E + ++
Sbjct: 191 ADYFAPGVKSYPDGWN-LPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEA---V 246
Query: 270 RFPKIPSLPLSFENAQIILGSL---------WGGFVTQFLNDLXXXXXXXXXXXXTMVNL 320
P IP P+ + +AQ +L + W G + N V +
Sbjct: 247 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYN---VGPGFTGNFSTQKVKM 303
Query: 321 TFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYAL 380
+V I+NV +RG EP+RYV+LG HRD+W +G IDP SG A + +I R +
Sbjct: 304 HIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGT 363
Query: 381 LMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP-GFFA 439
L + GW PRRTI+F SWDAEEFG++GSTEW EEN L + VAY+N D +++G
Sbjct: 364 LKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRV 423
Query: 440 GATPQLDDILIEVTKMVKDPES--ESGTLYDQWS--APNRIFN----IQRLGGVDSDFAS 491
TP + ++ +TK +K P+ E +LY+ W+ +P+ F+ I +LG +DF
Sbjct: 424 DCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGS-GNDFEV 482
Query: 492 FVQHAGVPSVDMYYGKD--------FPVYHTALDTYTWIVGHADPLFHRHV 534
F Q G+ S Y K+ +P+YH+ +TY + DP+F H+
Sbjct: 483 FFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHL 533
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 266/531 (50%), Gaps = 59/531 (11%)
Query: 54 TALHFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT-HTVE 112
T H K FL + +L + T PHLAGTE + + +QS +++ ++
Sbjct: 10 TPKHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAH 69
Query: 113 YKALLSYP--VHAS-VSAHFSNGTTV-ELSLTEKGI-SQNAILDVVQPYHAYSPSGSAYG 167
Y LLSYP H + +S +G + SL E + D+V P+ A+SP G G
Sbjct: 70 YDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEG 129
Query: 168 KVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAE- 225
+V+VNY R ED+ LE +N SG +V+AR G V R + A+ GA GV+LY++
Sbjct: 130 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVF-RGNKVKNAQLAGAKGVILYSDP 188
Query: 226 --------------WDRLRGGGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSK 269
W+ L GGGV+RG ++ G GDPL+PG+ E + ++
Sbjct: 189 ADYFAPGVKSYPDGWN-LPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEA---V 244
Query: 270 RFPKIPSLPLSFENAQIILGSL---------WGGFVTQFLNDLXXXXXXXXXXXXTMVNL 320
P IP P+ + +AQ +L + W G + N V +
Sbjct: 245 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYN---VGPGFTGNFSTQKVKM 301
Query: 321 TFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYAL 380
+V I+NV +RG EP+RYV+LG HRD+W +G IDP SG A + +I R +
Sbjct: 302 HIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGT 361
Query: 381 LMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP-GFFA 439
L + GW PRRTI+F SWDAEEFG++GSTEW EEN L + VAY+N D +++G
Sbjct: 362 LKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRV 421
Query: 440 GATPQLDDILIEVTKMVKDPES--ESGTLYDQWS--APNRIFN----IQRLGGVDSDFAS 491
TP + ++ +TK +K P+ E +LY+ W+ +P+ F+ I +LG +DF
Sbjct: 422 DCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGS-GNDFEV 480
Query: 492 FVQHAGVPSVDMYYGKD--------FPVYHTALDTYTWIVGHADPLFHRHV 534
F Q G+ S Y K+ +P+YH+ +TY + DP+F H+
Sbjct: 481 FFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHL 531
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 265 bits (676), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 177/528 (33%), Positives = 265/528 (50%), Gaps = 59/528 (11%)
Query: 57 HFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT-HTVEYKA 115
H K FL + +L + T PHLAGTE + + +QS +++ ++ Y
Sbjct: 1 HNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDV 60
Query: 116 LLSYP--VHAS-VSAHFSNGTTV-ELSLTEKGI-SQNAILDVVQPYHAYSPSGSAYGKVV 170
LLSYP H + +S +G + SL E + D+V P+ A+SP G G +V
Sbjct: 61 LLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEGDLV 120
Query: 171 FVNYGREEDYRALEA-AGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAE---- 225
+VNY R ED+ LE +N SG +V+AR G V R + A+ GA GV+LY++
Sbjct: 121 YVNYARTEDFFKLERDMKINCSGKIVIARYGKVF-RGNKVKNAQLAGAKGVILYSDPADY 179
Query: 226 -----------WDRLRGGGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSKRFP 272
W+ L GGGV+RG ++ G GDPL+PG+ E + ++ P
Sbjct: 180 FAPGVKSYPDGWN-LPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEA---VGLP 235
Query: 273 KIPSLPLSFENAQIILGSL---------WGGFVTQFLNDLXXXXXXXXXXXXTMVNLTFQ 323
IP P+ + +AQ +L + W G + N V +
Sbjct: 236 SIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYN---VGPGFTGNFSTQKVKMHIH 292
Query: 324 GKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMR 383
+V I+NV +RG EP+RYV+LG HRD+W +G IDP SG A + +I R + L +
Sbjct: 293 STNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLKK 352
Query: 384 LGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP-GFFAGAT 442
GW PRRTI+F SWDAEEFG++GSTEW EEN L + VAY+N D +++G T
Sbjct: 353 EGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCT 412
Query: 443 PQLDDILIEVTKMVKDPES--ESGTLYDQWS--APNRIFN----IQRLGGVDSDFASFVQ 494
P + ++ +TK +K P+ E +LY+ W+ +P+ F+ I +LG +DF F Q
Sbjct: 413 PLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGS-GNDFEVFFQ 471
Query: 495 HAGVPSVDMYYGKD--------FPVYHTALDTYTWIVGHADPLFHRHV 534
G+ S Y K+ +P+YH+ +TY + DP+F H+
Sbjct: 472 RLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHL 519
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 177/531 (33%), Positives = 265/531 (49%), Gaps = 59/531 (11%)
Query: 54 TALHFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT-HTVE 112
T H K FL + +L + T PHLAGTE + + +QS +++ ++
Sbjct: 12 TPKHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAH 71
Query: 113 YKALLSYP--VHAS-VSAHFSNGTTV-ELSLTEKGI-SQNAILDVVQPYHAYSPSGSAYG 167
Y LLSYP H + +S +G + SL E + D+V P+ A+SP G G
Sbjct: 72 YDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEG 131
Query: 168 KVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAE- 225
+V+VNY R ED+ LE +N SG +V+AR G V R + A+ GA GV+LY++
Sbjct: 132 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVF-RGNKVKNAQLAGAKGVILYSDP 190
Query: 226 --------------WDRLRGGGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSK 269
W+ L GGGV+RG ++ G GDPL+PG+ E + ++
Sbjct: 191 ADYFAPGVKSYPDGWN-LPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEA---V 246
Query: 270 RFPKIPSLPLSFENAQIILGSL---------WGGFVTQFLNDLXXXXXXXXXXXXTMVNL 320
P IP P+ + +AQ +L + W G + N V +
Sbjct: 247 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYN---VGPGFTGNFSTQKVKM 303
Query: 321 TFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYAL 380
+V I+NV +RG EP+RYV+LG HRD+W +G IDP SG A + +I R +
Sbjct: 304 HIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGT 363
Query: 381 LMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP-GFFA 439
L + GW PRRTI+F SWDA EFG++GSTEW EEN L + VAY+N D +++G
Sbjct: 364 LKKEGWRPRRTILFASWDAAEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRV 423
Query: 440 GATPQLDDILIEVTKMVKDPES--ESGTLYDQWS--APNRIFN----IQRLGGVDSDFAS 491
TP + ++ +TK +K P+ E +LY+ W+ +P+ F+ I +LG +DF
Sbjct: 424 DCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGS-GNDFEV 482
Query: 492 FVQHAGVPSVDMYYGKD--------FPVYHTALDTYTWIVGHADPLFHRHV 534
F Q G+ S Y K+ +P+YH+ +TY + DP+F H+
Sbjct: 483 FFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHL 533
>pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 654
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 136/472 (28%), Positives = 223/472 (47%), Gaps = 45/472 (9%)
Query: 66 SSNYTVS-SYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKF-----NTHTVEYKALLSY 119
S+++T + L + ++ P AG++ + YV++ F + K + H V+ + S
Sbjct: 31 STDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVKIQVKDS- 89
Query: 120 PVHASVSAHFSNGTTVELSLTEKGISQNAILDVVQPYHAYSPSGSAYGKVVFVNYGREED 179
SV NG V L G Y AYS + + GK+V N+G ++D
Sbjct: 90 -AQNSVIIVDKNGRLVYLVENPGG------------YVAYSKAATVTGKLVHANFGTKKD 136
Query: 180 YRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVER--- 236
+ L V+G +V+ R G + V AE+ AIGVL+Y + + E
Sbjct: 137 FEDLYTP---VNGSIVIVRAGKITFAEKVAN-AESLNAIGVLIYMDQTKFPIVNAELSFF 192
Query: 237 GTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFV 296
G G GDP +PG+ + S P IP +S A+ + G++ G
Sbjct: 193 GHAHLGTGDPYTPGFPSFNHTQF----PPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCP 248
Query: 297 TQFLNDLXXXXXXXXXXXXTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDA 356
+ + D V LT K I N+F VI+G EP+ YV++G RDA
Sbjct: 249 SDWKTD---STCRMVTSESKNVKLTVSNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDA 305
Query: 357 WTYGAIDPNSGTAALLDIARRYA-LLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL 415
W GA GTA LL +A+ ++ ++++ G+ P R+IIF SW A +FG +G+TEW+E L
Sbjct: 306 WGPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYL 365
Query: 416 VNLGAKAVAYLNVDCAVQG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYD-QWSAP 473
+L KA Y+N+D AV G F A+P L ++ + + VK P + D W++
Sbjct: 366 SSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWAS- 424
Query: 474 NRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGK--DFPVYHTALDTYTWIV 523
+++L +D+ F+ ++G+P+V + + D+P T +DTY ++
Sbjct: 425 ----KVEKL-TLDNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELI 471
>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 640
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 136/472 (28%), Positives = 223/472 (47%), Gaps = 45/472 (9%)
Query: 66 SSNYTVS-SYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKF-----NTHTVEYKALLSY 119
S+++T + L + ++ P AG++ + YV++ F + K + H V+ + S
Sbjct: 17 STDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVKIQVKDS- 75
Query: 120 PVHASVSAHFSNGTTVELSLTEKGISQNAILDVVQPYHAYSPSGSAYGKVVFVNYGREED 179
SV NG V L G Y AYS + + GK+V N+G ++D
Sbjct: 76 -AQNSVIIVDKNGRLVYLVENPGG------------YVAYSKAATVTGKLVHANFGTKKD 122
Query: 180 YRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVER--- 236
+ L V+G +V+ R G + V AE+ AIGVL+Y + + E
Sbjct: 123 FEDLYTP---VNGSIVIVRAGKITFAEKVAN-AESLNAIGVLIYMDQTKFPIVNAELSFF 178
Query: 237 GTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFV 296
G G GDP +PG+ + S P IP +S A+ + G++ G
Sbjct: 179 GHAHLGTGDPYTPGFPSFNHTQF----PPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCP 234
Query: 297 TQFLNDLXXXXXXXXXXXXTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDA 356
+ + D V LT K I N+F VI+G EP+ YV++G RDA
Sbjct: 235 SDWKTD---STCRMVTSESKNVKLTVSNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDA 291
Query: 357 WTYGAIDPNSGTAALLDIARRYA-LLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL 415
W GA GTA LL +A+ ++ ++++ G+ P R+IIF SW A +FG +G+TEW+E L
Sbjct: 292 WGPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYL 351
Query: 416 VNLGAKAVAYLNVDCAVQG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYD-QWSAP 473
+L KA Y+N+D AV G F A+P L ++ + + VK P + D W++
Sbjct: 352 SSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWAS- 410
Query: 474 NRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGK--DFPVYHTALDTYTWIV 523
+++L +D+ F+ ++G+P+V + + D+P T +DTY ++
Sbjct: 411 ----KVEKL-TLDNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELI 457
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 136/472 (28%), Positives = 223/472 (47%), Gaps = 45/472 (9%)
Query: 66 SSNYTVS-SYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKF-----NTHTVEYKALLSY 119
S+++T + L + ++ P AG++ + YV++ F + K + H V+ + S
Sbjct: 16 STDFTSTIKLLNENSYVPREAGSQKDENLALYVENEFREFKLSKVWRDQHFVKIQVKDS- 74
Query: 120 PVHASVSAHFSNGTTVELSLTEKGISQNAILDVVQPYHAYSPSGSAYGKVVFVNYGREED 179
SV NG V L G Y AYS + + GK+V N+G ++D
Sbjct: 75 -AQNSVIIVDKNGRLVYLVENPGG------------YVAYSKAATVTGKLVHANFGTKKD 121
Query: 180 YRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVER--- 236
+ L V+G +V+ R G + V AE+ AIGVL+Y + + E
Sbjct: 122 FEDLYTP---VNGSIVIVRAGKITFAEKVAN-AESLNAIGVLIYMDQTKFPIVNAELSFF 177
Query: 237 GTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFV 296
G G GDP +PG+ + S P IP +S A+ + G++ G
Sbjct: 178 GHAHLGTGDPYTPGFPSFNHTQF----PPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCP 233
Query: 297 TQFLNDLXXXXXXXXXXXXTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDA 356
+ + D V LT K I N+F VI+G EP+ YV++G RDA
Sbjct: 234 SDWKTD---STCRMVTSESKNVKLTVSNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDA 290
Query: 357 WTYGAIDPNSGTAALLDIARRYA-LLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL 415
W GA GTA LL +A+ ++ ++++ G+ P R+IIF SW A +FG +G+TEW+E L
Sbjct: 291 WGPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYL 350
Query: 416 VNLGAKAVAYLNVDCAVQG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYD-QWSAP 473
+L KA Y+N+D AV G F A+P L ++ + + VK P + D W++
Sbjct: 351 SSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWAS- 409
Query: 474 NRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGK--DFPVYHTALDTYTWIV 523
+++L +D+ F+ ++G+P+V + + D+P T +DTY ++
Sbjct: 410 ----KVEKL-TLDNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELI 456
>pdb|1XJO|A Chain A, Structure Of Aminopeptidase
Length = 284
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 25/207 (12%)
Query: 329 ATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGA--IDPNSGTAALLDIARRYALLMRLGW 386
AT +N+ A G +PN+ ++ G H D+ + GA D SG+AA+L+ A + R G+
Sbjct: 62 ATGYNLIANWPG-GDPNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETAL---AVSRAGY 117
Query: 387 SPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVD-CAVQGPGFFAGATPQL 445
P + + F W AEE G+IGS +V +K YLN D PG+F
Sbjct: 118 QPDKHLRFAWWGAEELGLIGSKFYVNNLPSADRSKLAGYLNFDXIGSPNPGYFV----YD 173
Query: 446 DDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYY 505
DD +IE T + ++ N I+ G SD A F ++ GVP ++
Sbjct: 174 DDPVIEK------------TFKNYFAGLNVPTEIETEGDGRSDHAPF-KNVGVPVGGLFT 220
Query: 506 GKDFPVYHTALDTYTWIVGHA-DPLFH 531
G + + G A D +H
Sbjct: 221 GAGYTKSAAQAQKWGGTAGQAFDRCYH 247
>pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus
pdb|1QQ9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
Methionine
pdb|1F2O|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Leucine
pdb|1F2P|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Phenylalanine
pdb|1TF8|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With L-
Tryptophan
pdb|1TF9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-L- Phenylalanine
pdb|1TKF|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Tryptophan
pdb|1TKH|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Phenylalanine
pdb|1TKJ|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Methionine
pdb|1XBU|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-D- Phenylalanine
Length = 284
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 25/207 (12%)
Query: 329 ATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGA--IDPNSGTAALLDIARRYALLMRLGW 386
AT +N+ A G +PN+ ++ G H D+ + GA D SG+AA+L+ A + R G+
Sbjct: 62 ATGYNLIANWPG-GDPNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETAL---AVSRAGY 117
Query: 387 SPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVD-CAVQGPGFFAGATPQL 445
P + + F W AEE G+IGS +V +K YLN D PG+F
Sbjct: 118 QPDKHLRFAWWGAEELGLIGSKFYVNNLPSADRSKLAGYLNFDMIGSPNPGYFV----YD 173
Query: 446 DDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYY 505
DD +IE T + ++ N I+ G SD A F ++ GVP ++
Sbjct: 174 DDPVIEK------------TFKNYFAGLNVPTEIETEGDGRSDHAPF-KNVGVPVGGLFT 220
Query: 506 GKDFPVYHTALDTYTWIVGHA-DPLFH 531
G + + G A D +H
Sbjct: 221 GAGYTKSAAQAQKWGGTAGQAFDRCYH 247
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWT--YGAIDPNSGTAALLDIARRYALLMRLGWS 387
T +NV A ++G + + VL+G H D+W GAID +G A + A+ ++ L
Sbjct: 234 TSYNVIAEVKGSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKH---ILDLPQK 290
Query: 388 PRRTIIFCSWDAEEFGMIGSTEWVEENLVNL 418
P RTI + AEE G++G + +E+ L
Sbjct: 291 PERTIRVVLYAAEELGLLGGKTYAKEHEAEL 321
>pdb|1RTQ|A Chain A, The 0.95 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica
pdb|1TXR|A Chain A, X-Ray Crystal Structure Of Bestatin Bound To Aap
pdb|1XRY|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
In Complex With Bestatin
pdb|2DEA|A Chain A, Crystal Structure Of The Aminopeptidase Of Aeromonas
Proteolytica At Ph 4.7
pdb|2NYQ|A Chain A, Structure Of Vibrio Proteolyticus Aminopeptidase With A
Bound Trp Fragment Of Dlwcf
pdb|3FH4|A Chain A, Crystal Structure Of Recombinant Vibrio Proteolyticus
Aminopeptidase
pdb|3VH9|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
Complexed With 8-Quinolinol
Length = 299
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 333 NVFAVIRGLEEPNRYVLLGNHRDAW----------TYGAIDPNSGTAALLDIARRYALLM 382
+V I G E P+ ++++G H D+ GA D SG AA+ ++ R +L
Sbjct: 77 SVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIR---VLS 133
Query: 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVD 429
+ P+R+I F ++ AEE G+ GS + + + G V+ L +D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQ-YKSEGKNVVSALQLD 179
>pdb|3B35|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3C|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
pdb|3B3S|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
Length = 291
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 333 NVFAVIRGLEEPNRYVLLGNHRDAW----------TYGAIDPNSGTAALLDIARRYALLM 382
+V I G E P+ ++++G H D+ GA D SG AA+ ++ R +L
Sbjct: 77 SVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIR---VLS 133
Query: 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDC 430
+ P+R+I F ++ AEE G+ GS + + + G V+ L +D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQ-YKSEGKNVVSALQLDA 180
>pdb|1IGB|A Chain A, Aeromonas Proteolytica Aminopeptidase Complexed With The
Inhibitor Para-Iodo-D-Phenylalanine Hydroxamate
Length = 291
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 333 NVFAVIRGLEEPNRYVLLGNHRDAW----------TYGAIDPNSGTAALLDIARRYALLM 382
+V I G E P+ ++++G H D+ GA D SG AA+ ++ R +L
Sbjct: 77 SVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIR---VLS 133
Query: 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVD 429
+ P+R+I F ++ AEE G+ GS + + + G V+ L +D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQ-YKSEGKNVVSALQLD 179
>pdb|3B3V|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3W|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
pdb|3B7I|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
Length = 291
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 333 NVFAVIRGLEEPNRYVLLGNHRDAW----------TYGAIDPNSGTAALLDIARRYALLM 382
+V I G E P+ ++++G H D+ GA D SG AA+ ++ R +L
Sbjct: 77 SVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIR---VLS 133
Query: 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVD 429
+ P+R+I F ++ AEE G+ GS + + + G V+ L +D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQ-YKSEGKNVVSALQLD 179
>pdb|1CP6|A Chain A, 1-Butaneboronic Acid Binding To Aeromonas Proteolytica
Aminopeptidase
pdb|1FT7|A Chain A, Aap Complexed With L-Leucinephosphonic Acid
pdb|1LOK|A Chain A, The 1.20 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica Complexed
With Tris: A Tale Of Buffer Inhibition
pdb|2PRQ|A Chain A, X-Ray Crystallographic Characterization Of The Co(Ii)-
Substituted Tris-Bound Form Of The Aminopeptidase From
Aeromonas Proteolytica
pdb|1AMP|A Chain A, Crystal Structure Of Aeromonas Proteolytica
Aminopeptidase: A Prototypical Member Of The
Co-Catalytic Zinc Enzyme Family
pdb|2IQ6|A Chain A, Crystal Structure Of The Aminopeptidase From Vibrio
Proteolyticus In Complexation With Leucyl-Leucyl-Leucine
Length = 291
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 333 NVFAVIRGLEEPNRYVLLGNHRDAW----------TYGAIDPNSGTAALLDIARRYALLM 382
+V I G E P+ ++++G H D+ GA D SG AA+ ++ R +L
Sbjct: 77 SVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIR---VLS 133
Query: 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVD 429
+ P+R+I F ++ AEE G+ GS + + + G V+ L +D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQ-YKSEGKNVVSALQLD 179
>pdb|3B3T|A Chain A, Crystal Structure Of The D118n Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
Length = 291
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 333 NVFAVIRGLEEPNRYVLLGNHRDAW----------TYGAIDPNSGTAALLDIARRYALLM 382
+V I G E P+ ++++G H D+ GA D SG AA+ ++ R +L
Sbjct: 77 SVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDNASGIAAVTEVIR---VLS 133
Query: 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVD 429
+ P+R+I F ++ AEE G+ GS + + + G V+ L +D
Sbjct: 134 ENNFQPKRSIAFMAYAAEEVGLRGSQDLANQ-YKSEGKNVVSALQLD 179
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 89/214 (41%), Gaps = 50/214 (23%)
Query: 327 KVATIHNVFAVIR---GLEEPNRYVLLGNHRDAWTY--GAIDPNSGTAALLDIARRYALL 381
K T HNV A + + N +++G+H D+ GA D SG A L++AR ++
Sbjct: 199 KTLTSHNVIATKKPDANKKNTNDIIIIGSHHDSVEKAPGANDDASGVAVTLELAR---VM 255
Query: 382 MRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGA 441
+L + F ++ AEE G+IGS ++ A L+ D + G F
Sbjct: 256 SKLKTDTE--LRFITFGAEENGLIGSKKY------------AASLSEDEIKRTIGMF--- 298
Query: 442 TPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNI-----QRLGGV-------DSDF 489
QLD MV ++ +Y NR+ ++ RL GV SD
Sbjct: 299 --QLD--------MVGSKDAGDLIMYTIDGKKNRVTDLGAAASSRLSGVLPYGQEGRSDH 348
Query: 490 ASFVQHA-GVPSVDMYYGKDFPVYHTALDTYTWI 522
SF HA G+P+ + P YHT DT I
Sbjct: 349 ESF--HALGIPAALFIHAPVEPWYHTPNDTLDKI 380
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 26/155 (16%)
Query: 78 LTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKALLSYPVHASVSAHFSNGTTVEL 137
L+ P +AG+ L VRY++ F+ SY H V G T
Sbjct: 25 LSQAPRVAGSPEELKAVRYIEQQFK---------------SYGYHVEVQPFQFEGYTAPS 69
Query: 138 SLTEKGISQNAILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMA 197
+T K ++ + YSP+ ++V+V G D AG +++G + +
Sbjct: 70 EVTLKIGTEKKEGEAF----TYSPNSDVTAELVYVGLGTTAD-----VAGKDLNGKIALI 120
Query: 198 RKGSVLSRSGVIFLAEAKGAIGVLLYAEWD-RLRG 231
++G++ S + + A +GA V++Y D +L G
Sbjct: 121 QRGNI-SFADKVRNAAKQGAKAVIIYNNTDGKLNG 154
>pdb|2ANP|A Chain A, Functional Glutamate 151 To Histidine Mutant Of The
Aminopeptidase From Aeromonas Proteolytica
Length = 291
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 333 NVFAVIRGLEEPNRYVLLGNHRDAW----------TYGAIDPNSGTAALLDIARRYALLM 382
+V I G E P+ ++++G H D+ GA D SG AA+ ++ R +L
Sbjct: 77 SVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIR---VLS 133
Query: 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVD 429
+ P+R+I F ++ A E G+ GS + + + G V+ L +D
Sbjct: 134 ENNFQPKRSIAFMAYAAHEVGLRGSQDLANQ-YKSEGKNVVSALQLD 179
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 370 ALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409
+L+ I+ RY + + PRR ++ C DA + ++ E
Sbjct: 35 SLMKISERYGPVFTIHLGPRRVVVLCGHDAVKEALVDQAE 74
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 370 ALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409
+L+ I+ RY + + PRR ++ C DA ++ E
Sbjct: 35 SLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 370 ALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409
+L+ I+ RY + + PRR ++ C DA ++ E
Sbjct: 35 SLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 370 ALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409
+L+ I+ RY + + PRR ++ C DA ++ E
Sbjct: 35 SLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 370 ALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409
+L+ I+ RY + + PRR ++ C DA ++ E
Sbjct: 35 SLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 370 ALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409
+L+ I+ RY + + PRR ++ C DA ++ E
Sbjct: 35 SLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 367 GTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVE 412
G A L D R L +R G P + +C E G+ G +WV+
Sbjct: 235 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESSGIAGILKWVK 280
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 367 GTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVE 412
G A L D R L +R G P + +C E G+ G +WV+
Sbjct: 236 GGAELSDDGRYVLLSIREGXDPVNRLWYCDLQQESNGITGILKWVK 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,467,005
Number of Sequences: 62578
Number of extensions: 690434
Number of successful extensions: 1583
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 38
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)