Query 009366
Match_columns 536
No_of_seqs 281 out of 2317
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 12:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2195 Transferrin receptor a 100.0 1.8E-75 3.8E-80 639.1 36.4 459 59-535 46-531 (702)
2 cd02121 PA_GCPII_like PA_GCPII 100.0 2.2E-37 4.7E-42 297.3 18.6 160 150-314 30-209 (220)
3 cd02128 PA_TfR PA_TfR: Proteas 100.0 3.1E-37 6.7E-42 286.8 17.0 160 155-321 19-182 (183)
4 cd02131 PA_hNAALADL2_like PA_h 100.0 2.7E-36 5.8E-41 268.6 13.2 131 152-292 2-138 (153)
5 PF04389 Peptidase_M28: Peptid 100.0 6.6E-29 1.4E-33 234.5 11.1 165 346-524 1-175 (179)
6 COG4882 Predicted aminopeptida 99.9 1.6E-25 3.4E-30 221.4 23.5 327 73-522 4-344 (486)
7 PRK10199 alkaline phosphatase 99.9 1.3E-23 2.9E-28 214.4 17.7 180 331-527 97-320 (346)
8 KOG2194 Aminopeptidases of the 99.8 2.8E-19 6.1E-24 196.6 9.7 181 328-523 125-309 (834)
9 COG2234 Iap Predicted aminopep 99.8 2.2E-18 4.8E-23 185.1 14.2 207 271-521 156-374 (435)
10 cd04819 PA_2 PA_2: Protease-as 99.6 6E-15 1.3E-19 131.6 11.2 104 156-293 14-119 (127)
11 PF09940 DUF2172: Domain of un 99.5 2.6E-13 5.7E-18 137.7 13.3 176 318-523 104-287 (386)
12 KOG3946 Glutaminyl cyclase [Po 99.5 3.9E-13 8.4E-18 130.2 12.3 222 271-523 62-317 (338)
13 PF05450 Nicastrin: Nicastrin; 99.4 3.3E-12 7.1E-17 125.2 15.6 167 346-523 1-199 (234)
14 cd04820 PA_M28_1_1 PA_M28_1_1: 99.4 1.4E-12 2.9E-17 116.7 7.3 78 151-228 8-97 (137)
15 cd04816 PA_SaNapH_like PA_SaNa 99.4 5.1E-12 1.1E-16 111.9 10.9 108 155-293 7-114 (122)
16 cd02130 PA_ScAPY_like PA_ScAPY 99.3 1.7E-11 3.7E-16 108.6 10.8 99 156-292 13-113 (122)
17 cd04817 PA_VapT_like PA_VapT_l 99.2 3.3E-11 7.2E-16 108.3 9.9 102 156-292 27-132 (139)
18 cd04822 PA_M28_1_3 PA_M28_1_3: 99.2 1.4E-11 3.1E-16 112.1 7.3 72 157-228 12-101 (151)
19 cd02133 PA_C5a_like PA_C5a_lik 99.2 7.9E-11 1.7E-15 107.3 9.3 93 160-292 21-113 (143)
20 PF02225 PA: PA domain; Inter 99.2 1.4E-10 3.1E-15 98.6 8.9 100 160-291 1-101 (101)
21 cd04814 PA_M28_1 PA_M28_1: Pro 99.1 1.3E-10 2.7E-15 104.8 6.9 66 157-227 12-100 (142)
22 cd04815 PA_M28_2 PA_M28_2: Pro 99.1 8.5E-10 1.8E-14 99.3 11.4 106 156-293 8-126 (134)
23 KOG2526 Predicted aminopeptida 99.1 4.2E-10 9.1E-15 114.9 9.8 190 327-522 189-398 (555)
24 cd04821 PA_M28_1_2 PA_M28_1_2: 99.0 2.7E-09 5.8E-14 98.0 9.4 107 164-292 21-152 (157)
25 cd00538 PA PA: Protease-associ 99.0 3.4E-09 7.4E-14 93.8 9.7 97 160-292 21-117 (126)
26 cd02129 PA_hSPPL_like PA_hSPPL 98.8 1.1E-08 2.4E-13 89.5 8.1 79 177-292 35-113 (120)
27 TIGR03176 AllC allantoate amid 98.8 1.1E-08 2.4E-13 109.1 9.7 79 331-412 55-139 (406)
28 cd02126 PA_EDEM3_like PA_EDEM3 98.7 3.9E-08 8.4E-13 87.6 8.9 101 163-293 15-118 (126)
29 TIGR01879 hydantase amidase, h 98.7 7.1E-08 1.5E-12 102.8 10.2 78 332-412 54-137 (401)
30 cd02132 PA_GO-like PA_GO-like: 98.7 1.3E-07 2.7E-12 85.7 10.2 94 162-292 35-130 (139)
31 PRK13799 unknown domain/N-carb 98.6 1E-07 2.2E-12 106.4 9.4 79 330-411 236-320 (591)
32 cd02123 PA_C_RZF_like PA_C-RZF 98.6 1.6E-07 3.4E-12 86.5 9.1 101 161-293 36-139 (153)
33 cd02127 PA_hPAP21_like PA_hPAP 98.6 2.3E-07 5E-12 81.5 9.1 96 165-293 11-108 (118)
34 PRK13590 putative bifunctional 98.6 1.5E-07 3.2E-12 105.1 9.6 77 331-410 237-319 (591)
35 cd02122 PA_GRAIL_like PA _GRAI 98.5 1.3E-06 2.8E-11 79.0 12.2 98 160-292 26-129 (138)
36 cd02125 PA_VSR PA_VSR: Proteas 98.5 7.5E-07 1.6E-11 79.3 10.3 104 163-292 9-118 (127)
37 COG4310 Uncharacterized protei 98.5 3.1E-07 6.7E-12 90.8 7.8 156 338-523 173-335 (435)
38 cd04813 PA_1 PA_1: Protease-as 98.5 5.2E-07 1.1E-11 79.1 7.7 75 188-292 36-110 (117)
39 PRK12890 allantoate amidohydro 98.4 6.7E-07 1.4E-11 95.7 9.6 79 332-413 61-145 (414)
40 PRK12891 allantoate amidohydro 98.4 8E-07 1.7E-11 95.1 9.1 76 332-410 63-144 (414)
41 PRK09133 hypothetical protein; 98.3 2.8E-06 6.1E-11 92.5 11.5 82 331-416 88-192 (472)
42 PF01546 Peptidase_M20: Peptid 98.3 8.3E-06 1.8E-10 76.9 12.8 146 349-518 1-170 (189)
43 PRK12893 allantoate amidohydro 98.2 3.1E-06 6.8E-11 90.4 9.0 79 332-413 63-147 (412)
44 PRK07906 hypothetical protein; 98.2 4.5E-06 9.8E-11 89.6 10.1 82 331-415 51-155 (426)
45 PRK09290 allantoate amidohydro 98.2 4.6E-06 9.9E-11 89.3 9.5 79 332-413 60-144 (413)
46 cd04818 PA_subtilisin_1 PA_sub 98.2 7.3E-06 1.6E-10 72.0 8.7 92 164-292 16-109 (118)
47 PRK12892 allantoate amidohydro 98.2 5.8E-06 1.3E-10 88.3 9.5 78 332-413 62-145 (412)
48 KOG2275 Aminoacylase ACY1 and 98.2 1.1E-05 2.5E-10 83.4 10.4 79 331-412 74-176 (420)
49 cd02120 PA_subtilisin_like PA_ 98.1 6.5E-06 1.4E-10 73.0 7.1 71 187-293 47-118 (126)
50 PRK06133 glutamate carboxypept 98.1 1.1E-05 2.4E-10 86.3 10.0 80 331-415 87-185 (410)
51 cd02124 PA_PoS1_like PA_PoS1_l 98.1 1E-05 2.3E-10 72.2 8.1 37 189-226 53-89 (129)
52 PRK08596 acetylornithine deace 98.1 1.1E-05 2.4E-10 86.5 9.9 80 332-414 63-166 (421)
53 TIGR01883 PepT-like peptidase 98.1 8.3E-06 1.8E-10 85.5 7.9 78 331-413 49-146 (361)
54 TIGR01910 DapE-ArgE acetylorni 98.1 1.2E-05 2.6E-10 84.7 9.1 78 332-413 52-152 (375)
55 PRK13983 diaminopimelate amino 98.1 1.9E-05 4.1E-10 83.8 10.5 80 331-414 63-166 (400)
56 TIGR01892 AcOrn-deacetyl acety 98.0 4.1E-05 8.8E-10 80.2 10.7 78 331-415 46-145 (364)
57 PRK13013 succinyl-diaminopimel 98.0 3.8E-05 8.2E-10 82.4 10.6 79 331-413 71-170 (427)
58 PRK13381 peptidase T; Provisio 98.0 2.6E-05 5.7E-10 83.2 9.1 79 331-413 54-184 (404)
59 KOG2657 Transmembrane glycopro 97.9 4E-05 8.7E-10 80.8 9.8 183 330-523 156-370 (596)
60 PRK06837 acetylornithine deace 97.9 3.4E-05 7.4E-10 82.9 9.7 80 330-412 82-184 (427)
61 PRK09104 hypothetical protein; 97.9 4.5E-05 9.7E-10 82.9 9.9 81 332-415 69-177 (464)
62 PRK07473 carboxypeptidase; Pro 97.9 5.1E-05 1.1E-09 80.2 10.0 81 332-415 62-161 (376)
63 PRK07907 hypothetical protein; 97.9 6.6E-05 1.4E-09 81.3 11.0 78 331-415 70-170 (449)
64 PF05343 Peptidase_M42: M42 gl 97.9 9.1E-05 2E-09 75.5 10.9 129 361-519 132-281 (292)
65 PRK08262 hypothetical protein; 97.9 7E-05 1.5E-09 81.9 10.6 79 332-413 98-201 (486)
66 TIGR01893 aa-his-dipept aminoa 97.9 5E-05 1.1E-09 82.9 9.4 75 332-413 47-152 (477)
67 PRK08588 succinyl-diaminopimel 97.8 5.5E-05 1.2E-09 79.8 9.2 76 332-413 49-147 (377)
68 TIGR01882 peptidase-T peptidas 97.8 4.2E-05 9.1E-10 81.8 8.4 110 273-412 25-187 (410)
69 PRK06915 acetylornithine deace 97.8 6.4E-05 1.4E-09 80.6 9.7 79 331-413 80-181 (422)
70 TIGR01880 Ac-peptdase-euk N-ac 97.8 9.1E-05 2E-09 78.8 9.8 80 331-413 57-160 (400)
71 PRK07338 hypothetical protein; 97.8 7.1E-05 1.5E-09 79.7 8.9 79 332-415 81-178 (402)
72 PRK08201 hypothetical protein; 97.7 0.00014 3.1E-09 78.8 10.7 80 332-415 67-169 (456)
73 PRK07079 hypothetical protein; 97.7 0.00017 3.8E-09 78.4 11.3 82 331-415 72-177 (469)
74 PRK06446 hypothetical protein; 97.7 0.00014 3E-09 78.5 10.2 79 331-415 50-151 (436)
75 PRK07522 acetylornithine deace 97.7 0.00014 3.1E-09 76.8 10.0 77 331-414 52-150 (385)
76 PRK05469 peptidase T; Provisio 97.7 0.00018 4E-09 76.8 9.9 79 331-413 55-186 (408)
77 TIGR01886 dipeptidase dipeptid 97.6 0.00019 4.1E-09 78.1 9.4 79 333-415 67-166 (466)
78 PRK13009 succinyl-diaminopimel 97.6 0.00024 5.3E-09 74.7 9.9 77 331-413 47-147 (375)
79 COG0624 ArgE Acetylornithine d 97.6 0.00027 5.8E-09 75.5 10.3 83 330-416 61-166 (409)
80 PRK07318 dipeptidase PepV; Rev 97.6 0.00022 4.8E-09 77.6 9.4 78 333-414 68-166 (466)
81 PRK05111 acetylornithine deace 97.6 0.00022 4.8E-09 75.3 8.7 75 332-414 61-157 (383)
82 PRK08554 peptidase; Reviewed 97.6 0.0004 8.7E-09 75.0 10.7 90 332-430 53-164 (438)
83 PRK04443 acetyl-lysine deacety 97.5 0.00025 5.4E-09 74.1 8.3 74 332-414 49-136 (348)
84 PRK07205 hypothetical protein; 97.5 0.00041 8.8E-09 75.0 9.9 75 333-413 66-163 (444)
85 PRK08652 acetylornithine deace 97.4 0.00035 7.7E-09 72.6 8.0 73 331-414 47-133 (347)
86 PRK13007 succinyl-diaminopimel 97.4 0.00069 1.5E-08 70.6 9.9 75 332-415 50-142 (352)
87 PRK06156 hypothetical protein; 97.4 0.00088 1.9E-08 74.0 11.0 78 332-414 96-202 (520)
88 TIGR03107 glu_aminopep glutamy 97.4 0.0012 2.7E-08 68.9 11.4 126 361-518 176-321 (350)
89 PRK13004 peptidase; Reviewed 97.4 0.00068 1.5E-08 72.2 9.6 76 332-413 59-158 (399)
90 TIGR01887 dipeptidaselike dipe 97.3 0.00096 2.1E-08 72.3 10.1 66 345-413 67-153 (447)
91 PRK08651 succinyl-diaminopimel 97.3 0.00059 1.3E-08 72.4 8.4 76 331-415 63-160 (394)
92 TIGR01900 dapE-gram_pos succin 97.3 0.0011 2.4E-08 70.0 10.0 80 333-415 42-156 (373)
93 PRK09961 exoaminopeptidase; Pr 97.3 0.0015 3.3E-08 68.2 10.4 128 360-517 163-312 (344)
94 TIGR01246 dapE_proteo succinyl 97.2 0.0017 3.8E-08 68.2 9.6 76 332-413 45-144 (370)
95 TIGR01902 dapE-lys-deAc N-acet 97.1 0.0017 3.8E-08 67.3 8.7 74 332-415 40-127 (336)
96 TIGR01891 amidohydrolases amid 97.1 0.0035 7.6E-08 65.8 10.8 78 332-414 44-137 (363)
97 PRK09864 putative peptidase; P 97.0 0.005 1.1E-07 64.4 11.0 126 361-518 173-321 (356)
98 COG1363 FrvX Cellulase M and r 97.0 0.0033 7.2E-08 65.3 9.1 126 361-516 178-324 (355)
99 PLN02693 IAA-amino acid hydrol 96.9 0.0035 7.6E-08 67.7 9.5 78 331-414 90-183 (437)
100 PRK00466 acetyl-lysine deacety 96.9 0.0019 4.1E-08 67.4 6.9 61 347-414 62-136 (346)
101 PRK15026 aminoacyl-histidine d 96.9 0.0058 1.3E-07 66.9 10.8 89 331-431 52-171 (485)
102 COG4187 RocB Arginine degradat 96.9 0.004 8.7E-08 65.1 8.6 98 330-432 64-208 (553)
103 TIGR03526 selenium_YgeY putati 96.7 0.0072 1.6E-07 64.2 9.3 76 332-413 57-156 (395)
104 KOG2442 Uncharacterized conser 96.5 0.0072 1.6E-07 63.7 7.6 96 166-293 72-167 (541)
105 PRK08737 acetylornithine deace 96.5 0.0086 1.9E-07 63.1 8.4 69 331-414 54-144 (364)
106 PLN02280 IAA-amino acid hydrol 96.4 0.016 3.4E-07 63.4 10.0 77 331-413 140-232 (478)
107 TIGR03320 ygeY M20/DapE family 96.4 0.014 2.9E-07 62.1 9.1 76 332-413 57-156 (395)
108 TIGR03106 trio_M42_hydro hydro 96.3 0.026 5.6E-07 58.9 10.5 126 362-518 182-322 (343)
109 KOG2276 Metalloexopeptidases [ 95.8 0.03 6.5E-07 58.2 7.8 78 337-417 83-183 (473)
110 PRK10199 alkaline phosphatase 95.6 0.037 8E-07 57.5 7.8 45 71-115 33-79 (346)
111 PRK02256 putative aminopeptida 95.4 0.07 1.5E-06 57.7 9.4 56 347-409 244-299 (462)
112 PTZ00371 aspartyl aminopeptida 94.4 0.16 3.5E-06 55.1 8.8 142 360-519 248-436 (465)
113 PF04114 Gaa1: Gaa1-like, GPI 94.0 0.29 6.3E-06 53.8 10.0 96 330-434 2-110 (504)
114 PRK02813 putative aminopeptida 93.5 0.57 1.2E-05 50.5 10.9 136 359-520 230-410 (428)
115 KOG3920 Uncharacterized conser 92.3 0.17 3.6E-06 45.9 3.9 53 167-223 66-118 (193)
116 KOG4628 Predicted E3 ubiquitin 91.2 0.3 6.5E-06 50.5 4.9 73 187-291 75-147 (348)
117 COG1473 AbgB Metal-dependent a 90.3 1.5 3.3E-05 46.6 9.4 78 332-414 57-150 (392)
118 KOG3946 Glutaminyl cyclase [Po 85.3 4 8.6E-05 41.0 8.1 55 60-115 42-96 (338)
119 PRK12893 allantoate amidohydro 79.7 3 6.4E-05 44.5 5.5 46 66-111 7-60 (412)
120 PRK12890 allantoate amidohydro 75.7 5.1 0.00011 42.8 5.9 44 68-111 8-58 (414)
121 PRK09290 allantoate amidohydro 75.4 4.7 0.0001 43.0 5.5 46 66-111 4-57 (413)
122 KOG2194 Aminopeptidases of the 75.2 6.6 0.00014 45.2 6.7 40 65-104 53-94 (834)
123 PRK12891 allantoate amidohydro 75.0 4.8 0.0001 43.0 5.5 44 69-112 10-61 (414)
124 PRK13013 succinyl-diaminopimel 73.4 50 0.0011 35.2 12.8 43 69-111 14-57 (427)
125 TIGR03176 AllC allantoate amid 71.2 4.8 0.0001 43.0 4.3 52 70-121 4-64 (406)
126 PRK15026 aminoacyl-histidine d 69.2 9.4 0.0002 41.9 6.1 47 65-113 6-52 (485)
127 KOG3566 Glycosylphosphatidylin 68.9 17 0.00036 40.2 7.6 80 327-416 116-196 (617)
128 PRK07473 carboxypeptidase; Pro 68.3 1.6E+02 0.0035 30.9 15.3 44 68-111 10-54 (376)
129 PRK13799 unknown domain/N-carb 65.7 8.1 0.00017 43.5 4.8 54 68-121 180-246 (591)
130 TIGR01879 hydantase amidase, h 63.5 9 0.00019 40.7 4.5 44 70-113 2-53 (401)
131 PLN02693 IAA-amino acid hydrol 59.1 37 0.00079 36.7 8.2 52 56-109 30-85 (437)
132 PRK06133 glutamate carboxypept 58.9 41 0.0009 35.8 8.6 45 68-112 36-81 (410)
133 TIGR01886 dipeptidase dipeptid 57.2 96 0.0021 33.7 11.2 42 69-110 13-64 (466)
134 PRK12892 allantoate amidohydro 56.4 20 0.00044 38.0 5.7 45 67-111 8-59 (412)
135 PRK06915 acetylornithine deace 54.3 23 0.00051 37.7 5.8 53 57-111 3-57 (422)
136 PRK13590 putative bifunctional 53.4 20 0.00044 40.3 5.3 46 68-113 180-237 (591)
137 TIGR01893 aa-his-dipept aminoa 52.8 25 0.00055 38.3 5.8 44 68-113 3-46 (477)
138 PRK08652 acetylornithine deace 47.8 32 0.0007 35.3 5.5 42 69-112 2-43 (347)
139 PRK07338 hypothetical protein; 45.5 43 0.00093 35.4 6.1 43 69-111 17-60 (402)
140 PRK05111 acetylornithine deace 44.6 42 0.00092 35.1 5.8 45 68-112 4-53 (383)
141 PRK08596 acetylornithine deace 41.9 48 0.001 35.4 5.8 44 69-112 13-57 (421)
142 cd01356 AcnX_swivel Putative A 40.8 58 0.0013 28.8 5.0 52 166-226 27-80 (123)
143 PRK09961 exoaminopeptidase; Pr 40.1 23 0.00051 37.0 2.9 29 329-359 40-68 (344)
144 PRK09133 hypothetical protein; 39.8 52 0.0011 35.8 5.7 42 68-109 36-77 (472)
145 TIGR01880 Ac-peptdase-euk N-ac 39.0 61 0.0013 34.2 6.0 43 68-110 8-50 (400)
146 TIGR03106 trio_M42_hydro hydro 37.8 75 0.0016 33.2 6.2 45 69-115 3-47 (343)
147 PRK08651 succinyl-diaminopimel 36.1 65 0.0014 33.8 5.6 45 69-113 6-51 (394)
148 PRK06837 acetylornithine deace 35.9 66 0.0014 34.4 5.7 40 69-110 20-59 (427)
149 PRK04443 acetyl-lysine deacety 35.9 66 0.0014 33.3 5.5 43 68-112 5-47 (348)
150 COG2195 PepD Di- and tripeptid 35.8 28 0.0006 37.4 2.7 42 66-109 2-43 (414)
151 TIGR01882 peptidase-T peptidas 35.6 73 0.0016 33.9 5.9 39 83-121 25-66 (410)
152 TIGR01883 PepT-like peptidase 35.6 53 0.0011 34.0 4.8 41 70-112 1-41 (361)
153 PRK13983 diaminopimelate amino 35.6 69 0.0015 33.6 5.7 43 69-111 5-51 (400)
154 TIGR01910 DapE-ArgE acetylorni 35.4 55 0.0012 34.2 4.9 39 73-111 2-41 (375)
155 PRK00466 acetyl-lysine deacety 35.1 83 0.0018 32.5 6.1 42 69-112 10-51 (346)
156 PRK08588 succinyl-diaminopimel 34.7 70 0.0015 33.4 5.6 42 69-112 2-43 (377)
157 PF02662 FlpD: Methyl-viologen 33.5 2.3E+02 0.0049 24.9 7.7 41 187-228 22-64 (124)
158 KOG0538 Glycolate oxidase [Ene 32.7 71 0.0015 32.7 4.8 44 179-223 264-307 (363)
159 PRK07522 acetylornithine deace 31.9 80 0.0017 33.0 5.5 41 69-110 4-44 (385)
160 PRK05469 peptidase T; Provisio 31.9 82 0.0018 33.4 5.6 45 70-114 3-56 (408)
161 TIGR01891 amidohydrolases amid 30.3 65 0.0014 33.6 4.4 37 72-110 2-38 (363)
162 TIGR01935 NOT-MenG RraA famliy 29.8 1.5E+02 0.0033 27.0 6.2 69 155-225 18-91 (150)
163 TIGR02998 RraA_entero regulato 28.5 2.2E+02 0.0047 26.5 6.9 70 155-226 22-96 (161)
164 PRK06446 hypothetical protein; 26.2 1.3E+02 0.0027 32.4 5.8 43 70-112 3-46 (436)
165 PRK13007 succinyl-diaminopimel 24.6 1.2E+02 0.0026 31.2 5.1 40 69-110 7-47 (352)
166 TIGR02708 L_lactate_ox L-lacta 24.1 1.8E+02 0.0039 30.8 6.2 34 190-224 280-313 (367)
167 PRK07906 hypothetical protein; 24.0 99 0.0021 33.0 4.5 25 87-111 21-45 (426)
168 PF01884 PcrB: PcrB family; I 23.2 1E+02 0.0022 30.3 4.0 56 166-223 153-211 (230)
169 PRK13009 succinyl-diaminopimel 23.2 1.3E+02 0.0027 31.4 5.0 40 70-111 3-42 (375)
170 TIGR01246 dapE_proteo succinyl 22.8 1.3E+02 0.0027 31.4 4.9 37 73-111 3-39 (370)
171 PRK07205 hypothetical protein; 22.4 1.3E+02 0.0028 32.4 5.0 45 67-111 9-61 (444)
172 PHA03049 IMV membrane protein; 21.5 4E+02 0.0086 20.9 5.9 27 54-80 41-67 (68)
173 TIGR03107 glu_aminopep glutamy 21.5 1.2E+02 0.0026 31.9 4.3 40 74-115 3-42 (350)
174 COG1363 FrvX Cellulase M and r 21.4 1.6E+02 0.0035 31.0 5.2 46 70-117 3-48 (355)
175 PRK08262 hypothetical protein; 21.4 1.5E+02 0.0032 32.3 5.3 45 67-111 42-93 (486)
176 PRK09372 ribonuclease activity 21.3 3.1E+02 0.0066 25.3 6.5 68 157-225 24-95 (159)
177 COG4635 HemG Flavodoxin [Energ 21.1 96 0.0021 28.8 3.0 26 87-112 10-36 (175)
178 PRK13004 peptidase; Reviewed 20.5 1.9E+02 0.004 30.6 5.7 38 69-108 15-52 (399)
No 1
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.8e-75 Score=639.07 Aligned_cols=459 Identities=43% Similarity=0.720 Sum_probs=396.7
Q ss_pred HHHHhcccChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCc-eeeeeeEEEEeeccc---ceEEEEcCCCce
Q 009366 59 QKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFN-THTVEYKALLSYPVH---ASVSAHFSNGTT 134 (536)
Q Consensus 59 ~~~~l~~~~~~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~~~v~~~~p~~---~~l~i~~~~g~~ 134 (536)
...++.+...+++..+++.++..+|++||..+.+++.++.++|.+.|++ ...-.|++.++||.. ....+..+++.+
T Consensus 46 ~~l~~~~~~~~ni~~~l~~~~~~~~~a~t~~~~~~a~~i~~~~~~~g~~s~~~~~y~v~l~~p~~~~~~~~~~~~e~~~~ 125 (702)
T KOG2195|consen 46 LELAQGELYASNISKNLNAFTLRPHLAGTEQDLRAAEIILSQYLEAGLRSSSLLAYDVLLSYPEYENPSSVLIKLEKDLE 125 (702)
T ss_pred HHHhhhhccccchhhccchhhhhhhhhcchhhHHHHHHHHHHhhhhccccccccceeehhccccccCCccceecccccce
Confidence 4455556677789999999999999999999999999999999999998 589999999999953 234444455555
Q ss_pred E-EEEecccccccc-ccccccccccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHH
Q 009366 135 V-ELSLTEKGISQN-AILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLA 212 (536)
Q Consensus 135 ~-~~~l~e~~~~~~-~~~~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A 212 (536)
+ .....+....+| ...+.+++|.+|++.|.++|++||+|||+.+||+.|+.++++++|||+|+|+|.++ +++|+++|
T Consensus 126 i~~s~~~~~~~~Gd~~~~~~~~~~~~~s~~g~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~-~g~~~~na 204 (702)
T KOG2195|consen 126 IFSSMPHELQVDGDEALPDIVEPFRAYSPSGSVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIY-RGKKVKNA 204 (702)
T ss_pred eeccchhcccCCCcccCccccCchhccCcCCCccceEEEEecCchhhhhHhhcCcccccCceEEEEccccc-hhhhHhhH
Confidence 4 333444444444 33567788999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHcCCeEEEEeecCCccCC----------------Ccceeccee--cCCCCCCCCCCCCCCCCcccCcccccccCCCCCC
Q 009366 213 EAKGAIGVLLYAEWDRLRG----------------GGVERGTVM--RGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKI 274 (536)
Q Consensus 213 ~~~GA~gvii~~d~~d~~~----------------~~v~rg~v~--~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~I 274 (536)
+++||.|||+|+|+.++.. ..+++|+|. .+.|||.||+||+.....|.+. +....+.+|+|
T Consensus 205 ~~~~a~gviiy~d~~d~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~-~~~~~~~~P~I 283 (702)
T KOG2195|consen 205 EAAGADGVIIYTDPYDYGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSP-DAKFSGGLPKI 283 (702)
T ss_pred HHhhcCcEEEeeccccccccccccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCCh-hhhhcCCCCCC
Confidence 9999999999999977543 247889888 4899999999999987777663 22334569999
Q ss_pred ceeecCHHHHHHHHHHcCCCCcccccccccccCCcccCCCceE-EE-EEEeeeeeeeeeeeEEEEEcCCCCCCcEEEEee
Q 009366 275 PSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTM-VN-LTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGN 352 (536)
Q Consensus 275 P~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~gp~~~~-v~-l~~~~~~~~~~~~Nvi~~i~G~~~~~~~vii~a 352 (536)
|++|||+++|+.|++.++|...++ ++.++.|++||++.. .. +.+....+.++++||||+|+|+.+||++|||||
T Consensus 284 p~~Pis~~~ae~l~~~~~g~~~~~----~~~~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~epD~~Viiga 359 (702)
T KOG2195|consen 284 PSLPISAEDAEILLRLLGGGVKPD----GLLGVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSEEPDRYVIIGA 359 (702)
T ss_pred CCcCccchhHHHHHHHhCCCcccc----cccCccccccccccccccceeccceeeeeeeeeEEEEEecCcCCCeEEEEec
Confidence 999999999999999999887766 333378999998641 11 222256789999999999999999999999999
Q ss_pred ccCCcCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccc
Q 009366 353 HRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAV 432 (536)
Q Consensus 353 H~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~ 432 (536)
|+|||.+||.|+++|+|+|+|++|.|..+++.||||+|||+||+|+|||+|++||++|+|++...+..++++|||+|+++
T Consensus 360 hrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin~d~~~ 439 (702)
T KOG2195|consen 360 HRDSWTFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAV 439 (702)
T ss_pred cccccccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcccccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHHhcCCCeEEEeeeCCCCCC
Q 009366 433 QG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGKDFPV 511 (536)
Q Consensus 433 ~g-~~~~~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~~~GIPs~~~~~~~~~p~ 511 (536)
.+ .+|.+.++|.|.+++.++++.+.+|.....+. .+..+ .++|||.+|++++|||++.+.|...||+
T Consensus 440 ~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~-----------~v~~~-g~~Sd~~~F~~~~GIpsv~~~f~~~yP~ 507 (702)
T KOG2195|consen 440 LGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSN-----------RVLSL-GGGSDYASFLQFAGIPSVDFAFNRTYPF 507 (702)
T ss_pred cCCceeEEecCccHHHHHHHHHhccCCCCccccce-----------eEecc-CCCCcchhhccccCcceeeeeecCCcce
Confidence 99 99999999999999999999998887532221 12344 7899999999999999999999989999
Q ss_pred CCCccccHHHHhhcCCCCcceeec
Q 009366 512 YHTALDTYTWIVGHADPLFHRHVA 535 (536)
Q Consensus 512 YHT~~Dt~d~v~~~~dp~f~~h~a 535 (536)
|||.+||++|+++|+||.|+.|++
T Consensus 508 yhs~~dt~~~~~k~~D~~~~~~~~ 531 (702)
T KOG2195|consen 508 YHSTYDTYEWLDKLLDPKFKQHLA 531 (702)
T ss_pred eecccCcHHHHHHhcchhHHHHHH
Confidence 999999999999999999999975
No 2
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=100.00 E-value=2.2e-37 Score=297.34 Aligned_cols=160 Identities=41% Similarity=0.662 Sum_probs=146.3
Q ss_pred ccccccccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCcc
Q 009366 150 LDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRL 229 (536)
Q Consensus 150 ~~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~ 229 (536)
.+.+++|++||++|.++|+|||||||+.+||++|++.+++++|||||+|+|.++ ++.|+++|+++||+|||+|+||.++
T Consensus 30 ~~~~~~f~a~s~sg~v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr~G~~~-~~~Kv~~A~~~GA~gVIiy~Dp~d~ 108 (220)
T cd02121 30 PDVVPPFHAYSASGNVTAELVYANYGSPEDFEYLEDLGIDVKGKIVIARYGGIF-RGLKVKNAQLAGAVGVIIYSDPADD 108 (220)
T ss_pred ccccccceecCCCCCceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEEEECCCcc-HHHHHHHHHHcCCEEEEEEeCchhc
Confidence 456789999999999999999999999999999999999999999999999998 8999999999999999999999765
Q ss_pred -----------------CCCcceeccee---cCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHH
Q 009366 230 -----------------RGGGVERGTVM---RGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILG 289 (536)
Q Consensus 230 -----------------~~~~v~rg~v~---~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~ 289 (536)
+.++||||+|. ++.|||+|||||+.++.+|+...+ ...+|+||++|||+++|++||+
T Consensus 109 ~~~~~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~---~~~lP~IPs~PIS~~da~~lL~ 185 (220)
T cd02121 109 GYITGENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEE---SKGLPKIPSLPISYRDAQPLLK 185 (220)
T ss_pred ccccccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCccc---ccCCCCCCcccCCHHHHHHHHH
Confidence 23789999998 579999999999999999987533 2478999999999999999999
Q ss_pred HcCCCCcccccccccccCCcccCCC
Q 009366 290 SLWGGFVTQFLNDLGRVNGGRVGPG 314 (536)
Q Consensus 290 ~l~g~~~~~~w~~~~~~~~~~~gp~ 314 (536)
.|+|..+|..|++++. ..|++||+
T Consensus 186 ~L~g~~~p~~W~g~l~-~~y~~g~~ 209 (220)
T cd02121 186 ALGGPGAPSDWQGGLP-VTYRLGFG 209 (220)
T ss_pred HcCCCCCCccccCCCC-CceeeCCC
Confidence 9999999999999986 88998876
No 3
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=100.00 E-value=3.1e-37 Score=286.78 Aligned_cols=160 Identities=32% Similarity=0.512 Sum_probs=143.6
Q ss_pred cccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCC---
Q 009366 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRG--- 231 (536)
Q Consensus 155 ~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~--- 231 (536)
+|++||++|+|+|+|||||||+.+||++|++.+++++|||||+|||.++ +++|+++|+++||+|||||+||.|+..
T Consensus 19 ~f~~~s~~G~v~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~-~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~ 97 (183)
T cd02128 19 GYVAYSAAGTVTGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKIS-FAEKVANAEKLGAVGVLIYPDPADFPIDPS 97 (183)
T ss_pred cccCCCCCCceEEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCC-HHHHHHHHHHCCCEEEEEecCHHHcCcccC
Confidence 4899999999999999999999999999999999999999999999998 999999999999999999999976543
Q ss_pred CcceecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCCCCcccccccccccCCccc
Q 009366 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRV 311 (536)
Q Consensus 232 ~~v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~ 311 (536)
++++||+++++.|||+|||||+.++. |+...+ +..+|+||++|||+++|++||+.|+|..+|.+|+++ ..+|++
T Consensus 98 ~~~~~g~~~~~~GDplTPG~ps~~~~-~~~~~~---~~~lP~IPs~PIS~~da~~lL~~l~G~~~p~~w~g~--~~~y~~ 171 (183)
T cd02128 98 ETALFGHVHLGTGDPYTPGFPSFNHT-QFPPSQ---SSGLPNIPAQTISAAAAAKLLSKMGGPVCPSGWKGG--DSTCRL 171 (183)
T ss_pred cceeecceeccCCCcCCCCCcccccc-ccCccc---ccCCCCCCEeccCHHHHHHHHHHcCCCCCCccccCC--CcCEee
Confidence 46899999999999999999999875 454333 236899999999999999999999999999999998 489999
Q ss_pred CCCc-eEEEEE
Q 009366 312 GPGP-TMVNLT 321 (536)
Q Consensus 312 gp~~-~~v~l~ 321 (536)
||+. .+|+|+
T Consensus 172 Gp~~~~~v~~~ 182 (183)
T cd02128 172 GTSSSKNVKLT 182 (183)
T ss_pred CCCCCceEEEe
Confidence 9994 356665
No 4
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=100.00 E-value=2.7e-36 Score=268.60 Aligned_cols=131 Identities=27% Similarity=0.319 Sum_probs=116.7
Q ss_pred ccccccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCC
Q 009366 152 VVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRG 231 (536)
Q Consensus 152 ~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~ 231 (536)
++++|++||++|+|+|++||||||+.|||++|++ +++|+|||||+|||+++ |+.|+++|+++||+|||||+||.|+..
T Consensus 2 ~~p~f~aYS~sG~Vtg~~VYvNyG~~eDf~~L~~-~V~v~GkIvi~RyG~~~-RG~Kv~~A~~~GA~GviIYsDP~d~~~ 79 (153)
T cd02131 2 LLYSYAAYSAKGTLQAEVVDVQYGSVEDLRRIRD-NMNVTNQIALLKLGQAP-LLYKLSLLEEAGFGGVLLYVDPCDLPK 79 (153)
T ss_pred CcCccceeCCCCceEEEEEEecCCCHHHHHHHHh-CCCccceEEEEeccCcc-hHHHHHHHHHCCCeEEEEecChhhccC
Confidence 5678999999999999999999999999999997 69999999999999999 999999999999999999999988642
Q ss_pred C-----cceecceecC-CCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 232 G-----GVERGTVMRG-VGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 232 ~-----~v~rg~v~~~-~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
. ++|+ ++++ .|||+||||||.++++|++. ..+|+||++|||+.+|++||+.-.
T Consensus 80 ~~~~~~~v~~--v~~~~~GDP~TPG~PS~~~~~R~~~------~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 80 TRHTWHQAFM--VSLNPGGDPSTPGYPSADQSCRQCR------GNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred cCCCccceEE--EecCCCCCCCCCCCccccCcccCCc------CCCCCCcccccCHHHHHHHHhCCc
Confidence 1 3443 4444 49999999999999999863 268999999999999999998864
No 5
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.96 E-value=6.6e-29 Score=234.52 Aligned_cols=165 Identities=33% Similarity=0.453 Sum_probs=117.5
Q ss_pred cEEEEeeccCC--------cCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhc
Q 009366 346 RYVLLGNHRDA--------WTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVN 417 (536)
Q Consensus 346 ~~vii~aH~Ds--------~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~ 417 (536)
++|||+||+|| +.+||+||++|+|+|||+||.|+++ +.+|+|+|+|++|+|||.|+.||++|++. ...
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~---~~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~~ 76 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKEL---KPQPKRTIRFVFFDGEEQGLLGSRAFVEH-DHE 76 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHS---THSSSEEEEEEEESSGGGTSHHHHHHHHH-HHC
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHh---hcccCccEEEEEecccccCccchHHHHHh-hhc
Confidence 58999999999 6679999999999999999999874 34789999999999999999999999994 545
Q ss_pred ccCcEEEEEEeeccccC-CCcccccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHHhcC
Q 009366 418 LGAKAVAYLNVDCAVQG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHA 496 (536)
Q Consensus 418 ~~~~~~a~inlD~~~~g-~~~~~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~~~ 496 (536)
+.+++.++||+|++|.+ ..+.....+.+...+....+.+..+.. ..+... .........+|||.||.. .
T Consensus 77 ~~~~~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~sD~~~F~~-~ 146 (179)
T PF04389_consen 77 ELDNIAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYG--SSLGPD-------VPPEKPTFGGSDHYPFSK-A 146 (179)
T ss_dssp HHHHEEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHH--CHTSSE-------CEEEESSTTSSTCHHHHT-T
T ss_pred ccccceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhh--cccccc-------cccccCCCCCCCcHhhhc-C
Confidence 66899999999999998 555555555433223332222210000 000000 000112357899999997 7
Q ss_pred CCeEEEeeeCC-CCCCCCCccccHHHHhh
Q 009366 497 GVPSVDMYYGK-DFPVYHTALDTYTWIVG 524 (536)
Q Consensus 497 GIPs~~~~~~~-~~p~YHT~~Dt~d~v~~ 524 (536)
|||++.+.... ..++|||.+||+++++.
T Consensus 147 gip~~~~~~~~~~~~~~Ht~~Dt~~~~~~ 175 (179)
T PF04389_consen 147 GIPAVTLSSTDGYNPYYHTPEDTPDNLDP 175 (179)
T ss_dssp T-EEEEEEESSSSGTTTTSTT-SGGGC-H
T ss_pred CEeEEEEEecCCCCCCCCCcccChhhcCC
Confidence 99999999875 67999999999999863
No 6
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=221.44 Aligned_cols=327 Identities=24% Similarity=0.220 Sum_probs=238.6
Q ss_pred HHHHHhhc-CCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEEEEeecccceEEEEcCCCceEEEEecccccccccccc
Q 009366 73 SYLRDLTH-HPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKALLSYPVHASVSAHFSNGTTVELSLTEKGISQNAILD 151 (536)
Q Consensus 73 ~~L~~ls~-~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~~v~~~~p~~~~l~i~~~~g~~~~~~l~e~~~~~~~~~~ 151 (536)
..++.+.. +.=.+|++|+..+++||+.-|++.-...++.++.|+.|.-.+..+..-+ + + .
T Consensus 4 ~y~k~~~ayg~li~g~~ger~~v~~vrafLe~~~v~~rL~p~~VlaWe~~e~~le~~~---~-~----i----------- 64 (486)
T COG4882 4 LYSKLKGAYGWLIVGAGGERGAVEVVRAFLEESLVSSRLHPFWVLAWELRESGLEPAA---S-W----I----------- 64 (486)
T ss_pred HHHHHhhhccceeecCCCchhHHHHHHHHHhccccceeeeeeeeehhhhHhhccCcch---h-h----h-----------
Confidence 34444444 4567899999999999999999987678999999998887665443311 1 0 0
Q ss_pred ccccccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccch-HHHHHHHHcCCeEEEEeecCCccC
Q 009366 152 VVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRS-GVIFLAEAKGAIGVLLYAEWDRLR 230 (536)
Q Consensus 152 ~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~-~kv~~A~~~GA~gvii~~d~~d~~ 230 (536)
.....+||-+|.++|.+|..+ .|+.|+|++.+.-+..... ..+..|+++||.|+||-+++..
T Consensus 65 -~ai~~PYsls~~IEgr~v~~~--------------gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~r-- 127 (486)
T COG4882 65 -SAIVGPYSLSGDIEGRPVVLE--------------GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPR-- 127 (486)
T ss_pred -hhcccccccccccccceeccc--------------CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCce--
Confidence 112468999999999999652 3899999999977654112 2356799999999999887632
Q ss_pred CCcceecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCCCCcccccccccccCCcc
Q 009366 231 GGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGR 310 (536)
Q Consensus 231 ~~~v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~ 310 (536)
.-+. .|| |.+. .+ ...++||+..+..++...+-+
T Consensus 128 ------riV~--~Gd-----~gy~-----~~-------s~PtPIPva~v~en~~~y~~~--------------------- 161 (486)
T COG4882 128 ------RIVT--GGD-----WGYS-----VS-------SSPTPIPVAVVPENYSRYAEE--------------------- 161 (486)
T ss_pred ------eEEe--ccc-----cccc-----CC-------CCCCCcceEEeccCcchhhcc---------------------
Confidence 1111 233 2221 11 135679999887655544321
Q ss_pred cCCCceEEEEEEeeeeeeeeeeeEEEEEcCCCCCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCc
Q 009366 311 VGPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRR 390 (536)
Q Consensus 311 ~gp~~~~v~l~~~~~~~~~~~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r 390 (536)
..++++.++...+...++|+|+.-.|. +++|+|+||+|||..|+.||-.|++...++++.|.. -..
T Consensus 162 ----~~rvrl~vD~~~~~ty~y~~Ia~~~~e---n~vv~i~AH~DHW~~G~tDN~lg~~~AV~~~~~lr~-------~~~ 227 (486)
T COG4882 162 ----AGRVRLWVDACVERTYDYNVIAVDGGE---NGVVLIGAHLDHWYTGFTDNILGVAQAVETAGRLRG-------RGL 227 (486)
T ss_pred ----ceeEEEEEecccceeEEEEEEEecCCC---CCceEEeechhhhhhcccchhhhHHHHHHHHHHHhh-------cCc
Confidence 246888888777778999999998774 679999999999999999999999999999887742 234
Q ss_pred eEEEEEecccCCCC---------cchHHHHHHhhhcccCcEEEEEEeeccccCCCcccccChhHHHHHHHHHhhcCCCCC
Q 009366 391 TIIFCSWDAEEFGM---------IGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDILIEVTKMVKDPES 461 (536)
Q Consensus 391 ti~f~~~~~eE~g~---------~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~~~~~~~p~l~~~~~~~~~~v~~p~~ 461 (536)
.+-++.|++||.|+ .||++|+++++.. +.+.+|+|+|.+|.+ .+..++.|.|..+..++.+.+.
T Consensus 228 ~~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k~~--~~v~~~VN~Dv~g~~-~lv~~~~P~L~e~~~~~g~~~v---- 300 (486)
T COG4882 228 AAGLVVFTAEEHGMPGMASFYWAAGSRGLLKESKAA--EEVEAYVNFDVAGYR-CLVASGAPQLVEHALEAGAVEV---- 300 (486)
T ss_pred ceeEEEEeccccCCCCCcceeecccchHHHhhcCCc--hhhhheecccccccc-chhhhcChHHHHHHHHhCCcee----
Confidence 57789999999885 6999999987653 579999999999875 6677888999877766544210
Q ss_pred CCCcceecccCCCCccccccCCCCCCchHHHHhcCCCeEEEeeeCC---CCCCCCCccccHHHH
Q 009366 462 ESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGK---DFPVYHTALDTYTWI 522 (536)
Q Consensus 462 ~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~~~GIPs~~~~~~~---~~p~YHT~~Dt~d~v 522 (536)
......+|-..+.. +|||++.+.+-+ ...+|||+.||+.-+
T Consensus 301 -------------------espe~y~Ds~~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~ 344 (486)
T COG4882 301 -------------------ESPEPYCDSIMYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPASW 344 (486)
T ss_pred -------------------cCCCcccchhhhhh-cCCCeeEeeeccCCCccceecCCCCCchhH
Confidence 00134577777766 799999998743 357899999996443
No 7
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.91 E-value=1.3e-23 Score=214.38 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=129.9
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC----------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIF 394 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~----------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f 394 (536)
..||||.++|+. ++.||++||+|+++ +||+||++|+|+|||+||.|.+. +++++|+|
T Consensus 97 g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~f 169 (346)
T PRK10199 97 GSTVIAAHEGKA--PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV-----PTEYGIRF 169 (346)
T ss_pred cceEEEEECCCC--CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC-----CCCCcEEE
Confidence 479999999953 58899999999975 39999999999999999999753 57899999
Q ss_pred EEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccccCCCccc-ccChhHHH-------HHHHHHhhcCCCCCCCCcc
Q 009366 395 CSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFA-GATPQLDD-------ILIEVTKMVKDPESESGTL 466 (536)
Q Consensus 395 ~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~~~~-~~~p~l~~-------~~~~~~~~v~~p~~~~~~l 466 (536)
+++++||.|+.||++|+++......++++++||+||++.+..+.+ .+...+.. .+.++++....+ +
T Consensus 170 v~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~------~ 243 (346)
T PRK10199 170 VATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRDRALAIARRHGIA------A 243 (346)
T ss_pred EEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCCCceEEecCCCcHHHHhHHHHHHHHHHHHHcCCc------c
Confidence 999999999999999999866556689999999999987733222 23223322 234444443211 1
Q ss_pred eecccCCCCccccccCCCCCCchHHHHhcCCCeEEEeeeCC-------------------CCCCCC-CccccHHHHhhcC
Q 009366 467 YDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGK-------------------DFPVYH-TALDTYTWIVGHA 526 (536)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~sD~~~F~~~~GIPs~~~~~~~-------------------~~p~YH-T~~Dt~d~v~~~~ 526 (536)
.. .+.+........+.+|||.||.+ .|||++.+..+. ....+| |.+|.++++++..
T Consensus 244 ~~---~~~~~~~~p~g~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~ 319 (346)
T PRK10199 244 TT---NPGLNKNYPKGTGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKAL 319 (346)
T ss_pred cc---CCCccccccCCCcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhc
Confidence 00 00000001122367999999999 799999996531 123468 8999999998765
Q ss_pred C
Q 009366 527 D 527 (536)
Q Consensus 527 d 527 (536)
-
T Consensus 320 p 320 (346)
T PRK10199 320 P 320 (346)
T ss_pred c
Confidence 3
No 8
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.78 E-value=2.8e-19 Score=196.62 Aligned_cols=181 Identities=25% Similarity=0.334 Sum_probs=145.6
Q ss_pred eeeeeeEEEEEcCCCCCCc-EEEEeeccCCcC--CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCC
Q 009366 328 VATIHNVFAVIRGLEEPNR-YVLLGNHRDAWT--YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGM 404 (536)
Q Consensus 328 ~~~~~Nvi~~i~G~~~~~~-~vii~aH~Ds~~--~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~ 404 (536)
-+.+.||+.+|.++..+++ +|++.||+||++ +||.|+|+++|+|||++|.+.+..+ ..+++|+|.++++||.++
T Consensus 125 Y~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~---~l~~~vVFLfNgaEE~~L 201 (834)
T KOG2194|consen 125 YQNISNIVVKISPKNGNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDK---LLTHSVVFLFNGAEESGL 201 (834)
T ss_pred eeeeeeEEEecCCCCCCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCC---cccccEEEEecCcccchh
Confidence 3667899999988877777 999999999997 4899999999999999999987532 238999999999999999
Q ss_pred cchHHHHHHhhhcccCcEEEEEEeeccccC-CCcccccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCC
Q 009366 405 IGSTEWVEENLVNLGAKAVAYLNVDCAVQG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLG 483 (536)
Q Consensus 405 ~GS~~~~~~~~~~~~~~~~a~inlD~~~~g-~~~~~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~ 483 (536)
.||..|+.+|+. .+++.+.||||.+|.| ...-..++|.- .+++...+.+++|.++ ++.+..+... ..
T Consensus 202 ~gsH~FItQH~w--~~~~ka~INLea~GsGGreiLFQagp~~-wl~k~Y~~~~phPf~s--tlgee~Fq~g-------~I 269 (834)
T KOG2194|consen 202 LGSHAFITQHPW--SKNIKAVINLEAAGSGGREILFQAGPNH-WLLKAYLQAAPHPFAS--TLGEELFQSG-------II 269 (834)
T ss_pred hhcccceecChh--hhhhheEEeccccCcccceeEEecCCch-HHHHHHHhhCCCchhh--hhHHHhhhcC-------cC
Confidence 999999999975 4789999999999998 55556666653 5666666667777653 3333222221 22
Q ss_pred CCCCchHHHHhcCCCeEEEeeeCCCCCCCCCccccHHHHh
Q 009366 484 GVDSDFASFVQHAGVPSVDMYYGKDFPVYHTALDTYTWIV 523 (536)
Q Consensus 484 ~~~sD~~~F~~~~GIPs~~~~~~~~~p~YHT~~Dt~d~v~ 523 (536)
.+.+|+..|.++.|+|.+++.+....-.|||.+|.++++.
T Consensus 270 pSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~ 309 (834)
T KOG2194|consen 270 PSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIP 309 (834)
T ss_pred ccccchHHHHHhCCcccceeeeeeccceEEeecccccccC
Confidence 4789999999999999999998756667999999988764
No 9
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=185.09 Aligned_cols=207 Identities=27% Similarity=0.303 Sum_probs=139.5
Q ss_pred CCCCceeecCHHHHHHHHHHcCCCCcccccccccccCCcccCCCceEEEEEEeeeeeeeeeeeEEEEEcCCCCCCcEEEE
Q 009366 271 FPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLL 350 (536)
Q Consensus 271 ~p~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~gp~~~~v~l~~~~~~~~~~~~Nvi~~i~G~~~~~~~vii 350 (536)
...+|+.++.......+.....- ++...+...+.. ......++.+.+.. ...+..+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~ 213 (435)
T COG2234 156 LAEIPAVGVSKLVGNRLIFYKQA-------------------GGGLTSKNVAAT--ISGSSQIIEAIIGT-AHSDSLGLL 213 (435)
T ss_pred ccccccccccccchhHHhhhhhc-------------------CcceEEEEEeee--eecccccceEEEec-cCCCceeee
Confidence 34678888887776666544321 011122222221 12223444555443 446899999
Q ss_pred eeccCCcC--CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEe
Q 009366 351 GNHRDAWT--YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNV 428 (536)
Q Consensus 351 ~aH~Ds~~--~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inl 428 (536)
++|+|+++ +||+||++|+|++||+||.|+.. +|+|+|+|++|++||.|+.||.+|+.++...+.+++.++||+
T Consensus 214 ~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~~~~viN~ 288 (435)
T COG2234 214 GAHIDSVPTGPGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSEAYVKRLSKDLDKKIALVINL 288 (435)
T ss_pred cccccCCcCCCCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccHHHHhcCCcchhhhhheEEec
Confidence 99999954 59999999999999999999775 599999999999999999999999999886666788889999
Q ss_pred eccccC---CCcccccCh--hHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHHhcCCCeEEEe
Q 009366 429 DCAVQG---PGFFAGATP--QLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDM 503 (536)
Q Consensus 429 D~~~~g---~~~~~~~~p--~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~~~GIPs~~~ 503 (536)
||++.. ..+...+++ .....+.+..+.+..+. .. ........+|||.||.. .|||++.+
T Consensus 289 Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~sd~~~f~~-~gi~~~~~ 352 (435)
T COG2234 289 DMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPV-------DP--------STVQDFDPRSDHYPFTE-AGIPSLFL 352 (435)
T ss_pred ccccCCCCCcceEEeccCCccccchHHHHHHHHHhhc-------cc--------cccCCCCCCCcchhhhh-cCCcceee
Confidence 999985 223333222 22222333333221110 00 01122368899999998 69999998
Q ss_pred eeCC-----CCCCCCCccccHHH
Q 009366 504 YYGK-----DFPVYHTALDTYTW 521 (536)
Q Consensus 504 ~~~~-----~~p~YHT~~Dt~d~ 521 (536)
.... ..+++||..|| ++
T Consensus 353 ~~~~~~~~~~~~~~~t~~d~-~~ 374 (435)
T COG2234 353 FSGAPGGVEAVAWGHTAADT-DK 374 (435)
T ss_pred eecCCccccccccccccccc-cc
Confidence 8753 34688999998 64
No 10
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.60 E-value=6e-15 Score=131.56 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=82.5
Q ss_pred ccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCC--ccchHHHHHHHHcCCeEEEEeecCCccCCCc
Q 009366 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSV--LSRSGVIFLAEAKGAIGVLLYAEWDRLRGGG 233 (536)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~--~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~ 233 (536)
.++||+++.++|++||+++|+.+||+ +++++|||||++++.+ . +..|+++|+++||+|||+|++....
T Consensus 14 ~~~~s~~~~~~~~lV~~g~G~~~d~~-----~~~v~GkIvlv~~g~~~~~-~~~k~~~A~~~GA~avi~~~~~~g~---- 83 (127)
T cd04819 14 ALPRSPSGEAKGEPVDAGYGLPKDFD-----GLDLEGKIAVVKRDDPDVD-RKEKYAKAVAAGAAAFVVVNTVPGV---- 83 (127)
T ss_pred EcCCCCCCCeeEEEEEeCCCCHHHcC-----CCCCCCeEEEEEcCCCchh-HHHHHHHHHHCCCEEEEEEeCCCCc----
Confidence 36788999999999999999999997 7899999999999987 5 7899999999999999999754210
Q ss_pred ceecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCC
Q 009366 234 VERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (536)
Q Consensus 234 v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (536)
+ +.++.|... ....+.||++.|+.+++++|++.++.
T Consensus 84 ~-----------~~~~~~~~~-------------~~~~~~IP~v~Is~edg~~L~~~l~~ 119 (127)
T cd04819 84 L-----------PATGDEGTE-------------DGPPSPIPAASVSGEDGLRLARVAER 119 (127)
T ss_pred C-----------ccccccccc-------------CCCCCCCCEEEEeHHHHHHHHHHHhc
Confidence 0 112221100 01245799999999999999999863
No 11
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.49 E-value=2.6e-13 Score=137.69 Aligned_cols=176 Identities=25% Similarity=0.278 Sum_probs=111.1
Q ss_pred EEEEEeeeeeeeeeeeEEEEEcCCCCCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEe
Q 009366 318 VNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (536)
Q Consensus 318 v~l~~~~~~~~~~~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~ 397 (536)
.++.++++.+.....-.--.|||. .++.|++++|.+|.. -|+||.||.|+++++||.|+++ +++.|.+|+|.
T Consensus 104 Y~V~IdS~l~~G~L~ygE~~ipG~--s~~EillsthiCHPs-mANdnLSG~~v~~~La~~L~~~-----~~rytYRflf~ 175 (386)
T PF09940_consen 104 YEVVIDSTLEDGSLTYGEFVIPGE--SDEEILLSTHICHPS-MANDNLSGPAVLTFLAKWLKQL-----PNRYTYRFLFV 175 (386)
T ss_dssp EEEEEEEEEES-EEEEEEEEE--S--SS-EEEEEEE----S--TTTTHHHHHHHHHHHHHHTTS-------SSEEEEEEE
T ss_pred eEEEEeeeecCCceeEEEEEecCC--CCCeEEEEEeccCcc-cccccccHHHHHHHHHHHHhcC-----CcCceEEEEEc
Confidence 556667667777776677778995 578999999999965 6999999999999999999876 46699999999
Q ss_pred cccCCCCcchHHHHHHhhhcccCcEEEEEEeeccccCCCcccccCh----hHHHHHHHHHhhcCCCCCCCCcceecccCC
Q 009366 398 DAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATP----QLDDILIEVTKMVKDPESESGTLYDQWSAP 473 (536)
Q Consensus 398 ~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~~~~~~~p----~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~ 473 (536)
. +-+||-.|+.++...+++++.+-++|.|+|....+....|+ ..+.++..+.+.... ...+++
T Consensus 176 P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~----~~~~~~----- 242 (386)
T PF09940_consen 176 P----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGP----NFKIYD----- 242 (386)
T ss_dssp -----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS-----EEEE------
T ss_pred c----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCC----CceEec-----
Confidence 8 56999999999999987779999999999987555444333 344444444443211 011221
Q ss_pred CCccccccCCCCCCchHHHHhcCC--CeEEEeeeCC--CCCCCCCccccHHHHh
Q 009366 474 NRIFNIQRLGGVDSDFASFVQHAG--VPSVDMYYGK--DFPVYHTALDTYTWIV 523 (536)
Q Consensus 474 ~~~~~~~~~~~~~sD~~~F~~~~G--IPs~~~~~~~--~~p~YHT~~Dt~d~v~ 523 (536)
....|||...|-. -| +|+..+.-+. .||-|||..|+++.|+
T Consensus 243 --------F~~~GsDERQfcS-PG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~ 287 (386)
T PF09940_consen 243 --------FLPRGSDERQFCS-PGFDLPVGSLMRSKYGEYPEYHTSLDNLDFIS 287 (386)
T ss_dssp ----------S-SSTHHHHTS-TTT---EEEEESS-TT--TTTTBTTSSGGG--
T ss_pred --------ccccCCCcceeec-CCcCCceeeeecccccCCcccccCCCccccCC
Confidence 1136899999976 46 8999887653 5899999999998775
No 12
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.9e-13 Score=130.23 Aligned_cols=222 Identities=19% Similarity=0.200 Sum_probs=139.5
Q ss_pred CCCCceeecCHHHHHHHHHHcCCCCcccccccccccCCcccCCCceEEEEEEeeeeeeeeeeeEEEEEcCCCCCCcEEEE
Q 009366 271 FPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLL 350 (536)
Q Consensus 271 ~p~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~gp~~~~v~l~~~~~~~~~~~~Nvi~~i~G~~~~~~~vii 350 (536)
+|++|--+=+++..+-|.+.+..- +|.-..+. .+-.+-.......|+|+++... ..++.++
T Consensus 62 v~Rvpgs~g~~~vr~~i~~~l~~l----~w~ve~~~-------------f~~~tp~g~~~f~nii~tl~~~--A~r~lVl 122 (338)
T KOG3946|consen 62 VPRVPGSPGSRQVRRFIIQHLRNL----GWAVETDA-------------FTDNTPLGTRNFNNLIATLDPN--ASRYLVL 122 (338)
T ss_pred ccccCCCCccHHHHHHHHHHHHhc----Cceeeecc-------------ccccCcceeeeeeeEEEecCCC--cchheee
Confidence 466777777888888888777532 33322110 0001112345668999999765 4799999
Q ss_pred eeccCCcC------CCCCCChhHHHHHHHHHHHHHHHHH-cCCCCCceEEEEEecccCC--------CCcchHHHHHHhh
Q 009366 351 GNHRDAWT------YGAIDPNSGTAALLDIARRYALLMR-LGWSPRRTIIFCSWDAEEF--------GMIGSTEWVEENL 415 (536)
Q Consensus 351 ~aH~Ds~~------~Ga~D~~sG~a~lle~ar~l~~~~~-~g~~p~rti~f~~~~~eE~--------g~~GS~~~~~~~~ 415 (536)
.+|||+.. .||.|.+..||+||++||++.+... .--+++-++.++||+|||. .+.||++.++.+.
T Consensus 123 achydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~~ 202 (338)
T KOG3946|consen 123 ACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKWE 202 (338)
T ss_pred ecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHHh
Confidence 99999864 3899999999999999999987654 2346788999999999973 5789999888732
Q ss_pred hc---------ccCcEEEEEEeeccccC-CCc---ccccChhHHHHHHHHHhh------cCCCCCCCCcceecccCCCCc
Q 009366 416 VN---------LGAKAVAYLNVDCAVQG-PGF---FAGATPQLDDILIEVTKM------VKDPESESGTLYDQWSAPNRI 476 (536)
Q Consensus 416 ~~---------~~~~~~a~inlD~~~~g-~~~---~~~~~p~l~~~~~~~~~~------v~~p~~~~~~l~~~~~~~~~~ 476 (536)
.. ..+++...+-+|..|.. ..| .-..+ .+-.-+.++..+ +.+-.- ....|+ ..
T Consensus 203 sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~t~-~wF~Rl~~iE~~l~~~g~l~s~r~-~~~~Fq----~~-- 274 (338)
T KOG3946|consen 203 SWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPNTD-RWFHRLQSIEGELALLGLLASHRL-PPRYFQ----PG-- 274 (338)
T ss_pred ccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcchH-HHHHHHHHHHHHHHHHHHHHhccC-Cchhcc----cc--
Confidence 21 23455555566666554 111 11111 111111111111 110000 001111 10
Q ss_pred cccccCCCCCCchHHHHhcCCCeEEEeeeCCCCCCCCCccccHHHHh
Q 009366 477 FNIQRLGGVDSDFASFVQHAGVPSVDMYYGKDFPVYHTALDTYTWIV 523 (536)
Q Consensus 477 ~~~~~~~~~~sD~~~F~~~~GIPs~~~~~~~~~p~YHT~~Dt~d~v~ 523 (536)
......+.||.||+++ |||++.+...+...++||+.|+..+++
T Consensus 275 ---~~~~~veDDHiPFlrr-gVPVLHlI~~pFPsvWHt~dD~e~nld 317 (338)
T KOG3946|consen 275 ---GLSSVVEDDHIPFLRR-GVPVLHLIPVPFPSVWHTPDDNERNLD 317 (338)
T ss_pred ---CccccccCCcchhhhc-CCceEEecCCCCcccccCccchhhcCC
Confidence 1112367899999995 999999998766778999999987774
No 13
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.42 E-value=3.3e-12 Score=125.17 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=115.8
Q ss_pred cEEEEeeccCCcC------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhccc
Q 009366 346 RYVLLGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLG 419 (536)
Q Consensus 346 ~~vii~aH~Ds~~------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~ 419 (536)
++|++.|.+|+.. +||+.+.+|.++||++|++|+++.+..-.++|+|+|++|.||.+|.+||+.|+.+......
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 4899999999864 4999999999999999999998843223578999999999999999999999998654332
Q ss_pred ------------CcEEEEEEeeccccCC--Ccccc--c---C---hhHHHHHHHHHhhcCCCCCCCCcceecccCCCCcc
Q 009366 420 ------------AKAVAYLNVDCAVQGP--GFFAG--A---T---PQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIF 477 (536)
Q Consensus 420 ------------~~~~a~inlD~~~~g~--~~~~~--~---~---p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~ 477 (536)
++|..+|.++.+|... .+++. . . ..+.+++..+.+.... ....+.+ ...
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~---~~~~~~~----~~~-- 151 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLAS---SNIVIKK----ASS-- 151 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccc---cccceec----ccc--
Confidence 4788999999998863 35443 1 1 1233444444433211 1011110 000
Q ss_pred ccccCCCCCCchHHHHhcC-CCeEEEeeeCC---CCCCCCCccccHHHHh
Q 009366 478 NIQRLGGVDSDFASFVQHA-GVPSVDMYYGK---DFPVYHTALDTYTWIV 523 (536)
Q Consensus 478 ~~~~~~~~~sD~~~F~~~~-GIPs~~~~~~~---~~p~YHT~~Dt~d~v~ 523 (536)
.... -..|-...|++.- +||.+.+.... .+++||+.+|+.++++
T Consensus 152 -~~~~-LPPsS~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~ 199 (234)
T PF05450_consen 152 -SNPP-LPPSSLQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENIN 199 (234)
T ss_pred -CCCC-CCcchHHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhc
Confidence 0001 1235578899843 69999987532 3689999999999986
No 14
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.36 E-value=1.4e-12 Score=116.74 Aligned_cols=78 Identities=27% Similarity=0.340 Sum_probs=61.8
Q ss_pred cccccccccCCCCCcceeEEEecCCChhhHHHHHH-cCCcccCcEEEEEeCCCc-----------cchHHHHHHHHcCCe
Q 009366 151 DVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVL-----------SRSGVIFLAEAKGAI 218 (536)
Q Consensus 151 ~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~-~gidv~GkIvlv~~g~~~-----------~~~~kv~~A~~~GA~ 218 (536)
+++..+.+|+++|.++|+|||||||+.++...+.+ .++|++|||||++.|.+. .++.|+++|+++||+
T Consensus 8 d~~~~~~~~~~~g~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~ 87 (137)
T cd04820 8 DLLIGASAAEPAASVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAI 87 (137)
T ss_pred ceEeeccccCCCCCceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCe
Confidence 34556677889999999999999998543211212 289999999999988751 256899999999999
Q ss_pred EEEEeecCCc
Q 009366 219 GVLLYAEWDR 228 (536)
Q Consensus 219 gvii~~d~~d 228 (536)
|||+|+||.+
T Consensus 88 aVIi~~d~~~ 97 (137)
T cd04820 88 GMITLTTPRS 97 (137)
T ss_pred EEEEEeCCcc
Confidence 9999999864
No 15
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.36 E-value=5.1e-12 Score=111.92 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=78.9
Q ss_pred cccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcc
Q 009366 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGV 234 (536)
Q Consensus 155 ~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v 234 (536)
+|.+++++++++|+|||++++..+.-+.+...+.+++|||||+++|.+. +.+|+.+|+++||+|||+|++.... .
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~-f~~K~~~A~~aGA~avIi~n~~~~~----~ 81 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCP-FADKQKVAAARGAVAVIVVNNSDGG----G 81 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEeCCCCc----c
Confidence 5788899999999999998654322111111256899999999999998 8999999999999999999876310 0
Q ss_pred eecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCC
Q 009366 235 ERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (536)
Q Consensus 235 ~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (536)
.++| +..+ .....||++.|+++++++|++.++.
T Consensus 82 -------------~~~~--------~~~~-----~~~~~iP~~~Is~~~G~~l~~~l~~ 114 (122)
T cd04816 82 -------------TAGT--------LGAP-----NIDLKVPVGVITKAAGAALRRRLGA 114 (122)
T ss_pred -------------cccc--------ccCC-----CCCCeeeEEEEcHHHHHHHHHHHcC
Confidence 1111 0000 0124699999999999999999853
No 16
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.30 E-value=1.7e-11 Score=108.61 Aligned_cols=99 Identities=27% Similarity=0.434 Sum_probs=77.1
Q ss_pred ccccCCCCCcceeEEEec-CC-ChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCc
Q 009366 156 YHAYSPSGSAYGKVVFVN-YG-REEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGG 233 (536)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~-~G-~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~ 233 (536)
.++|++.++++|+|||++ .| .++||. .+++|||||+++|.|. +.+|+++|+++||+|||+|++..+ +
T Consensus 13 ~~~~~~~~~~~g~lv~~~~~gC~~~~~~------~~~~gkIvlv~rg~c~-f~~K~~~A~~aGA~~vIv~n~~~~----~ 81 (122)
T cd02130 13 AFTYSPAGEVTGPLVVVPNLGCDAADYP------ASVAGNIALIERGECP-FGDKSALAGAAGAAAAIIYNNVPA----G 81 (122)
T ss_pred ecccCCCCCcEEEEEEeCCCCCCcccCC------cCCCCEEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCC----c
Confidence 468899999999999996 45 466764 3799999999999998 899999999999999999976521 0
Q ss_pred ceecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 234 VERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 234 v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
. .++.++. ...+.||++.|+.+++++|++.++
T Consensus 82 ~------------~~~~~~~---------------~~~~~Ip~v~Is~~~G~~L~~~l~ 113 (122)
T cd02130 82 G------------LSGTLGE---------------PSGPYVPTVGISQEDGKALVAALA 113 (122)
T ss_pred c------------cccccCC---------------CCCCEeeEEEecHHHHHHHHHHHh
Confidence 0 1111110 012469999999999999999985
No 17
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.25 E-value=3.3e-11 Score=108.32 Aligned_cols=102 Identities=20% Similarity=0.323 Sum_probs=76.8
Q ss_pred ccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCc----cchHHHHHHHHcCCeEEEEeecCCccCC
Q 009366 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVL----SRSGVIFLAEAKGAIGVLLYAEWDRLRG 231 (536)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~----~~~~kv~~A~~~GA~gvii~~d~~d~~~ 231 (536)
|..+...|.++|+||+++-|. .||. +.+++|||||+++|.|. ++.+|+++|+++||+|||||++..+.
T Consensus 27 ~~s~~~~g~~tg~lv~~g~~g-~d~~-----~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~-- 98 (139)
T cd04817 27 YASMPVTGSATGSLYYCGTSG-GSYI-----CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALA-- 98 (139)
T ss_pred ccccccCCcceEEEEEccCCC-cccc-----CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCC--
Confidence 455667899999999998666 4765 67899999999999873 26899999999999999999875221
Q ss_pred CcceecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 232 ~~v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
+.+.+. .||+ .....||++.|+++++++|++.++
T Consensus 99 -g~~~~~----lg~~----------------------~~~~~IP~v~is~~dG~~L~~~l~ 132 (139)
T cd04817 99 -GLQNPF----LVDT----------------------NNDTTIPSVSVDRADGQALLAALG 132 (139)
T ss_pred -Cccccc----ccCC----------------------CCCceEeEEEeeHHHHHHHHHHhc
Confidence 111110 0111 012469999999999999999885
No 18
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.24 E-value=1.4e-11 Score=112.09 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=55.8
Q ss_pred cccCCCCCcceeEEEecCCChhh-HHHHHHcCCcccCcEEEEEeCCC--------c---------cchHHHHHHHHcCCe
Q 009366 157 HAYSPSGSAYGKVVFVNYGREED-YRALEAAGVNVSGCVVMARKGSV--------L---------SRSGVIFLAEAKGAI 218 (536)
Q Consensus 157 ~a~s~~G~v~g~lVyv~~G~~~D-~~~L~~~gidv~GkIvlv~~g~~--------~---------~~~~kv~~A~~~GA~ 218 (536)
.+++++|.++|+|||||||+.++ +....-.++||+||||||+.+.. + .+..|+++|+++||+
T Consensus 12 ~~~s~sg~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 12 FAFSRSGAVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred eccCCCCCceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 56788899999999999997532 11111138999999999976631 1 146899999999999
Q ss_pred EEEEeecCCc
Q 009366 219 GVLLYAEWDR 228 (536)
Q Consensus 219 gvii~~d~~d 228 (536)
|||+|+++.+
T Consensus 92 aVIv~~d~~~ 101 (151)
T cd04822 92 AVIVVNGPNS 101 (151)
T ss_pred EEEEEeCCcc
Confidence 9999999854
No 19
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.18 E-value=7.9e-11 Score=107.28 Aligned_cols=93 Identities=26% Similarity=0.352 Sum_probs=75.9
Q ss_pred CCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecce
Q 009366 160 SPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (536)
Q Consensus 160 s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v 239 (536)
++.+.++++|||+++|..+||. +.+++||||||++|.|. +.+|+.+|+++||+|||+|++.... +
T Consensus 21 ~~~~~~~~~lv~~g~g~~~d~~-----~~dv~GkIvL~~rg~c~-~~~K~~~a~~aGA~gvIi~n~~~~~----~----- 85 (143)
T cd02133 21 TDLLGKTYELVDAGLGTPEDFE-----GKDVKGKIALIQRGEIT-FVEKIANAKAAGAVGVIIYNNVDGL----I----- 85 (143)
T ss_pred CCCCCcEEEEEEccCCchhccC-----CCCccceEEEEECCCCC-HHHHHHHHHHCCCeEEEEeecCCCc----c-----
Confidence 4567899999999999999987 67899999999999987 8999999999999999999876210 0
Q ss_pred ecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 240 ~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
.+ . . .....||++.|+++++++|++.++
T Consensus 86 --------~~---~------~--------~~~~~iP~v~Is~~dG~~L~~~l~ 113 (143)
T cd02133 86 --------PG---T------L--------GEAVFIPVVFISKEDGEALKAALE 113 (143)
T ss_pred --------cc---c------C--------CCCCeEeEEEecHHHHHHHHHHHh
Confidence 00 0 0 012358999999999999999985
No 20
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.15 E-value=1.4e-10 Score=98.65 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=67.9
Q ss_pred CCCCCcceeEEEecCCChhhHHHHH-HcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecc
Q 009366 160 SPSGSAYGKVVFVNYGREEDYRALE-AAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGT 238 (536)
Q Consensus 160 s~~G~v~g~lVyv~~G~~~D~~~L~-~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~ 238 (536)
|+.|.++++||+.+++...+..... ..+.+++||||||++|.+. +.+|+.+|+++||+||||++++.... .
T Consensus 1 ~~~~~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~-~~~k~~~a~~~GA~gvIi~~~~~~~~---~---- 72 (101)
T PF02225_consen 1 SPSGTVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCS-FDDKVRNAQKAGAKGVIIYNPPPNNG---S---- 72 (101)
T ss_dssp ---EEEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSC-HHHHHHHHHHTTESEEEEE-TSCSCT---T----
T ss_pred CCCCCEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCC-HHHHHHHHHHcCCEEEEEEeCCcccc---C----
Confidence 5678899999966655443333222 2477899999999999998 89999999999999999998221100 0
Q ss_pred eecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHc
Q 009366 239 VMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSL 291 (536)
Q Consensus 239 v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l 291 (536)
.+ . +.. .....||++.|+++++++|++.+
T Consensus 73 ------~~-~----------~~~-------~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 73 ------MI-D----------SED-------PDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp ------TT-C----------EBT-------TTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ------cc-c----------ccC-------CCCcEEEEEEeCHHHHhhhhccC
Confidence 00 0 000 12346999999999999999864
No 21
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=99.11 E-value=1.3e-10 Score=104.75 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=55.2
Q ss_pred cccCCCCCcceeEEEecCCCh------hhHHHHHHcCCcccCcEEEEEeCCCc-----------------cchHHHHHHH
Q 009366 157 HAYSPSGSAYGKVVFVNYGRE------EDYRALEAAGVNVSGCVVMARKGSVL-----------------SRSGVIFLAE 213 (536)
Q Consensus 157 ~a~s~~G~v~g~lVyv~~G~~------~D~~~L~~~gidv~GkIvlv~~g~~~-----------------~~~~kv~~A~ 213 (536)
+.++.++.++++||||+||.. +||+ ++|++|||||+..|.+. .+..|++.|+
T Consensus 12 ~~~~~~~~~~aelVfvGyGi~a~~~~~dDYa-----g~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~ 86 (142)
T cd04814 12 LNVDAVAIKDAPLVFVGYGIKAPELSWDDYA-----GLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAA 86 (142)
T ss_pred cCCCCccccceeeEEecCCcCCCCCChhhcC-----CCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHH
Confidence 355677889999999999965 5666 89999999999888651 1457999999
Q ss_pred HcCCeEEEEeecCC
Q 009366 214 AKGAIGVLLYAEWD 227 (536)
Q Consensus 214 ~~GA~gvii~~d~~ 227 (536)
++||+|||+++++.
T Consensus 87 ~~GA~gvIii~~~~ 100 (142)
T cd04814 87 RHGAAGVLIVHELA 100 (142)
T ss_pred HCCCcEEEEEeCCC
Confidence 99999999999873
No 22
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.09 E-value=8.5e-10 Score=99.28 Aligned_cols=106 Identities=24% Similarity=0.236 Sum_probs=73.0
Q ss_pred ccccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCC------ccchHH-------HHHHHHcCCeEEEE
Q 009366 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSV------LSRSGV-------IFLAEAKGAIGVLL 222 (536)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~------~~~~~k-------v~~A~~~GA~gvii 222 (536)
|.+.++.++|+|++|++. +.++++++ ...+++|||||+..+.| . ++.| .+.|+++||+|+|+
T Consensus 8 ~s~~t~~~gvta~vv~v~--~~~~~~~~--~~~~v~GKIvlv~~~~~~~~~~~~-~~~k~~~r~~~~~~A~~~GA~avIv 82 (134)
T cd04815 8 GSVATPPEGITAEVVVVK--SFDELKAA--PAGAVKGKIVFFNQPMVRTQTGSG-YGPTVAYRRRGAVEAAKKGAVAVLI 82 (134)
T ss_pred CCCCCCCCCcEEEEEEEC--CHHHHHhc--chhhcCCeEEEecCCccccCchhh-cCchhhhhhHHHHHHHhCCCEEEEE
Confidence 455667778999999996 33344332 14589999999999888 4 6666 79999999999999
Q ss_pred eecCCccCCCcceecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCC
Q 009366 223 YAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (536)
Q Consensus 223 ~~d~~d~~~~~v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (536)
++...... .. +.+..| +.. ...+.||++.|+.+++.+|.+.++.
T Consensus 83 ~s~~~~~~--~~-----------~~~G~~-------~~~-------~~~~~IP~v~is~ed~~~L~r~l~~ 126 (134)
T cd04815 83 RSIGTDSH--RS-----------PHTGMM-------SYD-------DGVPKIPAAAISVEDADMLERLAAR 126 (134)
T ss_pred EecCcccC--CC-----------CcCCcc-------ccC-------CCCCCCCEEEechhcHHHHHHHHhC
Confidence 98531100 00 001111 010 1235799999999999999999863
No 23
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.08 E-value=4.2e-10 Score=114.89 Aligned_cols=190 Identities=18% Similarity=0.271 Sum_probs=127.5
Q ss_pred eeeeeeeEEEEEc-CCC-----CCCcEEEEeeccCCcC------CCCCCChhHHHHHHHHHHHHHHHHHc-CCCCCceEE
Q 009366 327 KVATIHNVFAVIR-GLE-----EPNRYVLLGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMRL-GWSPRRTII 393 (536)
Q Consensus 327 ~~~~~~Nvi~~i~-G~~-----~~~~~vii~aH~Ds~~------~Ga~D~~sG~a~lle~ar~l~~~~~~-g~~p~rti~ 393 (536)
...++.||.|++. |-. +.-..|+|.||||+.+ .||+-||||+++|||+||.|+++... .-+++.+++
T Consensus 189 ~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLl 268 (555)
T KOG2526|consen 189 PSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLL 268 (555)
T ss_pred CCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEE
Confidence 4677889999998 432 2357999999999875 49999999999999999999999843 357899999
Q ss_pred EEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccccC-CCcc--cccChhHHHHHHHHHhhcCCCCCCCCcceecc
Q 009366 394 FCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG-PGFF--AGATPQLDDILIEVTKMVKDPESESGTLYDQW 470 (536)
Q Consensus 394 f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~~g-~~~~--~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~ 470 (536)
|++.+|.-+++.|++.|++-....+++++...|++|.+|++ .++. ++..|.=+..+.+..+.+..-... .. ++.-
T Consensus 269 F~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek-~~-~~v~ 346 (555)
T KOG2526|consen 269 FILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEK-KN-IEVV 346 (555)
T ss_pred EEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchh-cc-eEEE
Confidence 99999999999999999997777788899999999999998 5554 444553333444444433221110 11 1100
Q ss_pred cCCCCcccc-ccCCCCCCchHHHHhcCCCeEEEeeeC--CCCCCCCCcc-ccHHHH
Q 009366 471 SAPNRIFNI-QRLGGVDSDFASFVQHAGVPSVDMYYG--KDFPVYHTAL-DTYTWI 522 (536)
Q Consensus 471 ~~~~~~~~~-~~~~~~~sD~~~F~~~~GIPs~~~~~~--~~~p~YHT~~-Dt~d~v 522 (536)
.....+.-. .+. .=.|--|.. .-+|++.++.- ..+|.-.+.. |+...+
T Consensus 347 ~khkkInla~s~l---AWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrl 398 (555)
T KOG2526|consen 347 TKHKKINLASSRL---AWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRL 398 (555)
T ss_pred EEeeeEeeccchh---hhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhh
Confidence 000000000 111 113666766 58999998863 2345445554 554444
No 24
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.96 E-value=2.7e-09 Score=98.01 Aligned_cols=107 Identities=23% Similarity=0.294 Sum_probs=68.8
Q ss_pred CcceeEEEecCCChh------hHHHHHHcCCcccCcEEEEEeCCCc------------------cchHHHHHHHHcCCeE
Q 009366 164 SAYGKVVFVNYGREE------DYRALEAAGVNVSGCVVMARKGSVL------------------SRSGVIFLAEAKGAIG 219 (536)
Q Consensus 164 ~v~g~lVyv~~G~~~------D~~~L~~~gidv~GkIvlv~~g~~~------------------~~~~kv~~A~~~GA~g 219 (536)
.++++||||+||..+ ||+ |+||+|||||+..+... ....|+..|+++||+|
T Consensus 21 ~~~~elVFvGyGi~ape~~~dDy~-----g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~g 95 (157)
T cd04821 21 LKDSPLVFVGYGIVAPEYGWDDYK-----GLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAG 95 (157)
T ss_pred cccCCEEEeccCccCcccCccccc-----CCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeE
Confidence 468999999999753 666 89999999999966531 0125999999999999
Q ss_pred EEEeecCCccCCCcceecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCce-eecCHHHHHHHHHHcC
Q 009366 220 VLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPS-LPLSFENAQIILGSLW 292 (536)
Q Consensus 220 vii~~d~~d~~~~~v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~-~~Is~~~a~~Ll~~l~ 292 (536)
||++.++... ......+ ...|.. .++.+.... ..-+.+++ .+|+.+.|++|++..+
T Consensus 96 vi~v~~~~~~---~~~~~~~--------~~~~~~----~~~~~~~~~--~~~~~~~~~~~is~~~A~~lf~~ag 152 (157)
T cd04821 96 ALIVHETEPA---SYGWSVV--------QSSWTG----EQFDLVRAN--PGAPRVKVEGWIQRDAAVKLFALAG 152 (157)
T ss_pred EEEEeCCCcc---cCChhhh--------ccccCC----CceEeeccc--ccCCCceEEEEECHHHHHHHHHhcC
Confidence 9999886421 1111111 111111 112211110 12345565 4799999999998764
No 25
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.96 E-value=3.4e-09 Score=93.78 Aligned_cols=97 Identities=28% Similarity=0.388 Sum_probs=74.1
Q ss_pred CCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecce
Q 009366 160 SPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (536)
Q Consensus 160 s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v 239 (536)
.+.+.+.+++++++++++ |+. +.+++||||||++|.+. +..|+.+|+++||+|||+++++.+.. .
T Consensus 21 ~~~~~~~~~~~~C~~~~~-~~~-----~~~~~GkIvl~~~g~~~-~~~k~~~a~~~GA~gvii~~~~~~~~---~----- 85 (126)
T cd00538 21 SPVGVVAGPLVGCGYGTT-DDS-----GADVKGKIVLVRRGGCS-FSEKVKNAQKAGAKAVIIYNNGDDPG---P----- 85 (126)
T ss_pred CCccccccceEEEecCcc-ccc-----CCCccceEEEEECCCcC-HHHHHHHHHHCCCEEEEEEECCCCcc---c-----
Confidence 456788999999999987 554 57899999999999887 89999999999999999998763210 0
Q ss_pred ecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 240 ~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
....| .+. .....||++.|+.+++++|++.+.
T Consensus 86 -------~~~~~-----------~~~---~~~~~iP~~~is~~~g~~l~~~~~ 117 (126)
T cd00538 86 -------QMGSV-----------GLE---STDPSIPTVGISYADGEALLSLLE 117 (126)
T ss_pred -------ccccc-----------cCC---CCCCcEeEEEeCHHHHHHHHHHHh
Confidence 00000 000 012469999999999999999985
No 26
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.83 E-value=1.1e-08 Score=89.53 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=59.9
Q ss_pred hhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecceecCCCCCCCCCCCCCCC
Q 009366 177 EEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEG 256 (536)
Q Consensus 177 ~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v~~~~Gdp~tPg~~s~~~ 256 (536)
.+||. ..+++|||+|+++|.|. +.+|+++|+++||+|||||++..... |.- .
T Consensus 35 ~~~~~-----~~~l~gkIaLV~RG~Cs-F~~K~~~Aq~aGA~aVII~nn~~~~~------------------~~~---~- 86 (120)
T cd02129 35 ASDVP-----PGGLKGKAVVVMRGNCT-FYEKARLAQSLGAEGLLIVSRERLVP------------------PSG---N- 86 (120)
T ss_pred ccccC-----ccccCCeEEEEECCCcC-HHHHHHHHHHCCCCEEEEEECCCCCC------------------CCC---C-
Confidence 45664 45799999999999998 99999999999999999998763110 000 0
Q ss_pred CcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 257 GESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 257 ~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
... .....||++.|++++++.|++.++
T Consensus 87 ---~~~------~~~v~IP~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 87 ---RSE------YEKIDIPVALLSYKDMLDIQQTFG 113 (120)
T ss_pred ---CCC------CcCCcccEEEEeHHHHHHHHHHhc
Confidence 000 012469999999999999999885
No 27
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.83 E-value=1.1e-08 Score=109.15 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=70.0
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCC-----C
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG-----M 404 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g-----~ 404 (536)
.-||+|+++|.++..+.|++|+|+|+++. |..|+..|+++.||++|.|.+ .|.+|+|+|.+++|..||.+ +
T Consensus 55 ~gN~~~~~~g~~~~~~~i~~gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~---~~~~~~~~i~vi~~~~EEg~rf~~~~ 131 (406)
T TIGR03176 55 VGNLYGRLVGTEFPEETILTGSHIDTVVNGGNLDGQFGALAAWLAVDYLKE---KYGAPLRTVEVLSMAEEEGSRFPYVF 131 (406)
T ss_pred CCcEEEEecCCCCCCCeEEEeccccCCCCCCccCchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEeccccCccCCccc
Confidence 37999999998755689999999999998 568999999999999998854 46789999999999999976 9
Q ss_pred cchHHHHH
Q 009366 405 IGSTEWVE 412 (536)
Q Consensus 405 ~GS~~~~~ 412 (536)
+||+.|..
T Consensus 132 ~Gs~~~~g 139 (406)
T TIGR03176 132 WGSKNIFG 139 (406)
T ss_pred ccHHHHhC
Confidence 99999883
No 28
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.74 E-value=3.9e-08 Score=87.57 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=68.4
Q ss_pred CCcceeEEEec--CCCh-hhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecce
Q 009366 163 GSAYGKVVFVN--YGRE-EDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (536)
Q Consensus 163 G~v~g~lVyv~--~G~~-~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v 239 (536)
..+.|+||.+. +|+. .++ ..+++|||||+++|.|. +.+|+++|+++||+|||+|++...... .. ...+
T Consensus 15 ~~~~g~l~~~~p~~gC~~~~~------~~~~~gkIaLv~RG~C~-f~~K~~~Aq~aGA~avII~n~~~~~~~-~~-~~~~ 85 (126)
T cd02126 15 KAGVGRVVKAKPYRACSEITN------AEEVKGKIAIMERGDCM-FVEKARRVQKAGAIGGIVIDNNEGSSS-DT-APMF 85 (126)
T ss_pred CCceEEEEeCCchhcccCCCC------ccccCceEEEEECCCCc-HHHHHHHHHHCCCcEEEEEECCCCccc-cc-ccee
Confidence 34678999884 5553 222 23689999999999998 999999999999999999976422100 00 0000
Q ss_pred ecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCC
Q 009366 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (536)
Q Consensus 240 ~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (536)
. ..|++. ......||++.|+..++++|++.+..
T Consensus 86 ~-m~~~~~--------------------~~~~~~IP~v~I~~~dG~~L~~~l~~ 118 (126)
T cd02126 86 A-MSGDGD--------------------STDDVTIPVVFLFSKEGSKLLAAIKE 118 (126)
T ss_pred E-eecCCC--------------------CCCCCeEEEEEEEHHHHHHHHHHHHh
Confidence 0 011110 01134799999999999999999853
No 29
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.68 E-value=7.1e-08 Score=102.78 Aligned_cols=78 Identities=28% Similarity=0.334 Sum_probs=68.4
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCC-----CCc
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~-----g~~ 405 (536)
.||+|+++|...+.+.|++++|+|+++. |..|+..|++++|++++.|+ +.|.+|+++|.|++|.+||. |+.
T Consensus 54 ~nl~a~~~g~~~~~~~l~~~~H~DtV~~gg~~dg~~gvaa~l~a~~~l~---~~g~~~~~~i~~~~~~dEE~~~f~~~~~ 130 (401)
T TIGR01879 54 GNLIGRKEGTEPPLEVVLSGSHIDTVVNGGNFDGQLGVLAGIEVVDALK---EAYVVPLHPIEVVAFTEEEGSRFPYGMW 130 (401)
T ss_pred CcEEEEecCCCCCCCEEEEecccccCCCCCccCCHHHHHHHHHHHHHHH---HcCCCCCCCeEEEEEeCCcCcCcccccc
Confidence 6999999987543589999999999987 57899999999999999875 45778999999999999997 789
Q ss_pred chHHHHH
Q 009366 406 GSTEWVE 412 (536)
Q Consensus 406 GS~~~~~ 412 (536)
||..|+.
T Consensus 131 Gs~~~~~ 137 (401)
T TIGR01879 131 GSRNMVG 137 (401)
T ss_pred cHHHHhc
Confidence 9999875
No 30
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.68 E-value=1.3e-07 Score=85.73 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=67.8
Q ss_pred CCCcceeEEEec--CCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecce
Q 009366 162 SGSAYGKVVFVN--YGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (536)
Q Consensus 162 ~G~v~g~lVyv~--~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v 239 (536)
.+.++++++.++ .|+.. + .-+++||||||++|.|. +.+|+++|+++||+|||+|++.... ..
T Consensus 35 ~~~~~~~lv~~~~~~gC~~-~------~~~~~g~IvLV~RG~C~-F~~K~~nA~~aGA~avIv~n~~~~~----~~---- 98 (139)
T cd02132 35 DNANKTRAVLANPLDCCSP-S------TSKLSGSIALVERGECA-FTEKAKIAEAGGASALLIINDQEEL----YK---- 98 (139)
T ss_pred cCccEEEEEECCcccccCC-C------CcccCCeEEEEECCCCC-HHHHHHHHHHcCCcEEEEEECCCcc----cc----
Confidence 356789999875 44432 1 13789999999999998 9999999999999999999865211 00
Q ss_pred ecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 240 ~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
..+|+.. ......||++.|++.++++|++.+.
T Consensus 99 --------~~~~~~~-------------~~~~~~IP~v~Is~~~G~~L~~~l~ 130 (139)
T cd02132 99 --------MVCEDND-------------TSLNISIPVVMIPQSAGDALNKSLD 130 (139)
T ss_pred --------cccCCCC-------------CCCCCcEeEEEecHHHHHHHHHHHH
Confidence 0001000 0112469999999999999999985
No 31
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.62 E-value=1e-07 Score=106.38 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=70.1
Q ss_pred eeeeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCC-----C
Q 009366 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----G 403 (536)
Q Consensus 330 ~~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~-----g 403 (536)
...||+|+++|.++..+.|++|+|+|+++. |.-|...|+++.||++|.|.+ .|.+|+++|.|+.|.+||. +
T Consensus 236 ~~gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~---~~~~~~~~i~vi~~~~EEg~rF~~~ 312 (591)
T PRK13799 236 AVGNVVGRYKAADDDAKTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHE---QGERLPFHFEVIAFAEEEGQRFKAT 312 (591)
T ss_pred CCCCEEEEcCCCCCCCCeEEEeccccccCCCCccccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCCccCCCcc
Confidence 338999999998655689999999999987 568999999999999998854 5789999999999999997 7
Q ss_pred CcchHHHH
Q 009366 404 MIGSTEWV 411 (536)
Q Consensus 404 ~~GS~~~~ 411 (536)
++||+.|+
T Consensus 313 ~~GS~~~~ 320 (591)
T PRK13799 313 FLGSGALI 320 (591)
T ss_pred ccchHHHh
Confidence 89999997
No 32
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.62 E-value=1.6e-07 Score=86.47 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=70.1
Q ss_pred CCCCcceeEEEec--CCC-hhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceec
Q 009366 161 PSGSAYGKVVFVN--YGR-EEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERG 237 (536)
Q Consensus 161 ~~G~v~g~lVyv~--~G~-~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg 237 (536)
+.+.++|.|+.+. .|+ ..++..+ ...++.||||||++|.|. +.+|+++|+++||+|||+|++..+.. .
T Consensus 36 ~~~~~~g~lv~~~p~~gC~~~~~~~~--~~~~~~g~IvLV~RG~Ct-F~~Kv~nAq~aGA~avII~n~~~~~~---~--- 106 (153)
T cd02123 36 PGSGLKGVLVVAEPLNACSPIENPPL--NSNASGSFIVLIRRGNCS-FETKVRNAQRAGYKAAIVYNDESNDL---I--- 106 (153)
T ss_pred CCCceEEEEEeCCccccCCCCccccc--ccccCCCeEEEEECCCCC-HHHHHHHHHHCCCCEEEEEECCCCcc---e---
Confidence 3567899999884 343 2232110 135789999999999998 99999999999999999998642110 0
Q ss_pred ceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCC
Q 009366 238 TVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (536)
Q Consensus 238 ~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (536)
. + .++.. . .....||++.|+.++++.|++.++.
T Consensus 107 ~-m--~~~~~-------------~-------~~~v~IP~v~Is~~dg~~L~~~l~~ 139 (153)
T cd02123 107 S-M--SGNDQ-------------E-------IKGIDIPSVFVGKSTGEILKKYASY 139 (153)
T ss_pred e-c--cCCCC-------------C-------CcCCEEEEEEeeHHHHHHHHHHHhc
Confidence 0 0 01100 0 0134799999999999999998853
No 33
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.59 E-value=2.3e-07 Score=81.53 Aligned_cols=96 Identities=21% Similarity=0.155 Sum_probs=65.1
Q ss_pred cceeEEEec--CCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecceecC
Q 009366 165 AYGKVVFVN--YGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRG 242 (536)
Q Consensus 165 v~g~lVyv~--~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v~~~ 242 (536)
+.++||.+. .|+.. ... ..+++|||+|+++|.|. +.+|+.+|+++||+|||||++..+.. ...+.+
T Consensus 11 ~~~~lv~~~p~~gC~~-~~~----~~~~~g~I~Lv~RG~C~-F~~K~~~Aq~aGA~avII~n~~~~~~-----~~~~~m- 78 (118)
T cd02127 11 KHVPLVPADPLEACEE-LRN----IHDINGNIALIERGGCS-FLTKAINAQKAGALAVIITDVNNDSD-----EYYVEM- 78 (118)
T ss_pred cceEEEECCccccCCC-CCC----ccccCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCCcc-----ccceEe-
Confidence 456777664 44422 110 23789999999999998 99999999999999999998653200 000000
Q ss_pred CCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCC
Q 009366 243 VGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (536)
Q Consensus 243 ~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (536)
.++. ......||++.|+.++++.|++.+..
T Consensus 79 ~~~~---------------------~~~~i~IP~v~Is~~dG~~L~~~l~~ 108 (118)
T cd02127 79 IQDD---------------------SSRRADIPAAFLLGKNGYMIRKTLER 108 (118)
T ss_pred cCCC---------------------CCCCceEEEEEecHHHHHHHHHHHHc
Confidence 0110 01224699999999999999999853
No 34
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.59 E-value=1.5e-07 Score=105.11 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=67.0
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCC-----CC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GM 404 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~-----g~ 404 (536)
..||+|+++|..+....|++|+|+|+++. |..|+..|++++||++|.|.+ .|.+++++|.|++|.+||. ++
T Consensus 237 ~GNl~~~~~g~~~~~~~v~~gsHlDTV~~gG~~DG~~Gv~a~lea~~~l~~---~~~~~~~~i~vv~~~~EEg~rF~~~~ 313 (591)
T PRK13590 237 VGNVVGRYKGSTPQAKRLLTGSHYDTVRNGGKYDGRLGIFVPMACVRELHR---QGRRLPFGLEVVGFAEEEGQRYKATF 313 (591)
T ss_pred CCCEEEEecCCCCCCCeEEEecccccCCCCCCcccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCccccCCccc
Confidence 48999999997643478999999999988 458999999999999998854 5778889999999999997 58
Q ss_pred cchHHH
Q 009366 405 IGSTEW 410 (536)
Q Consensus 405 ~GS~~~ 410 (536)
+||..|
T Consensus 314 ~GS~~~ 319 (591)
T PRK13590 314 LGSGAL 319 (591)
T ss_pred cchHHH
Confidence 999964
No 35
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.52 E-value=1.3e-06 Score=78.95 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCCCCcceeEEEec-----CCCh-hhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCc
Q 009366 160 SPSGSAYGKVVFVN-----YGRE-EDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGG 233 (536)
Q Consensus 160 s~~G~v~g~lVyv~-----~G~~-~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~ 233 (536)
++..++.|-||... .|+. -+.. ....+++|+||||++|.|. +.+|+++|+++||+|||||++... . +.
T Consensus 26 ~~~~~~~G~l~~~~~~~~~~gC~~~~~~---~~~~~~~g~IaLV~RG~C~-F~~K~~nA~~aGA~aVIIyn~~~~-~-~~ 99 (138)
T cd02122 26 SPKEEAKGLVVVPDPPNDHYGCDPDTRF---PIPPNGEPWIALIQRGNCT-FEEKIKLAAERNASAVVIYNNPGT-G-NE 99 (138)
T ss_pred CCCCccEEEEecCCCCCCcCCCCCCccc---cCCccCCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCC-C-Cc
Confidence 66677888876443 2322 1110 0024689999999999998 999999999999999999987521 0 00
Q ss_pred ceecceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 234 VERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 234 v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
+.. +.. .....||++.|+..+|+.|++.+.
T Consensus 100 ------------~~~-----------m~~------~~~~~ip~v~Is~~~G~~l~~~l~ 129 (138)
T cd02122 100 ------------TVK-----------MSH------PGTGDIVAIMITNPKGMEILELLE 129 (138)
T ss_pred ------------eee-----------ccC------CCCCcceEEEEcHHHHHHHHHHHH
Confidence 000 000 012368999999999999999985
No 36
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.51 E-value=7.5e-07 Score=79.33 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCcceeEEEec---CCChhhHHH-H--HHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCccee
Q 009366 163 GSAYGKVVFVN---YGREEDYRA-L--EAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVER 236 (536)
Q Consensus 163 G~v~g~lVyv~---~G~~~D~~~-L--~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~r 236 (536)
+.+.|.|+|.. .|+. .+.. . ++......+|||||++|.|. +.+|+++|+++||+|||||++..+. .+..
T Consensus 9 ~~~~G~l~~~~~~~~gC~-~~~~~~~~~~~~~~~~~~IvLv~RG~C~-F~~K~~~Aq~aGA~avII~n~~~~~---~~~m 83 (127)
T cd02125 9 GTLTGVVVYPKENRTGCK-EFDVFFKPKKSEPGRRPVILLLDRGGCF-FTLKAWNAQQAGAAAVLVADNVDEP---LLTM 83 (127)
T ss_pred CeeEEEEEecCCccccCC-CCcccccccccccCCCceEEEEECCCcC-HHHHHHHHHHCCCcEEEEEECCCCc---cccc
Confidence 46788898883 2321 1110 0 00012477899999999999 9999999999999999999864210 0000
Q ss_pred cceecCCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 237 GTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 237 g~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
. ..++-.+.++ .....||++.|+.++++.|++.+.
T Consensus 84 ~----~~~~~~~~~~-----------------~~~i~IP~v~Is~~~G~~L~~~l~ 118 (127)
T cd02125 84 D----TPEESGSADY-----------------IEKITIPSALITKAFGEKLKKAIS 118 (127)
T ss_pred c----Cccccccccc-----------------CCCceEeEEEECHHHHHHHHHHHh
Confidence 0 0000000010 012369999999999999999985
No 37
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.49 E-value=3.1e-07 Score=90.79 Aligned_cols=156 Identities=25% Similarity=0.235 Sum_probs=107.2
Q ss_pred EcCCCCCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhc
Q 009366 338 IRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVN 417 (536)
Q Consensus 338 i~G~~~~~~~vii~aH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~ 417 (536)
++|. .++.|++++|.+| +.-|+||-||.|++.-+|++|+.+ +.+.+-+|++-. +-+||-.|+.++.+.
T Consensus 173 ~rg~--~~~eiLlst~lCH-PSmaNdn~SG~all~~lak~l~~~-----ktrysYRfvf~P----~TiGsi~wLsrnee~ 240 (435)
T COG4310 173 HRGT--SKDEILLSTYLCH-PSMANDNLSGLALLTFLAKALKSL-----KTRYSYRFVFAP----ETIGSIVWLSRNEEC 240 (435)
T ss_pred ccCC--ccceeeeeecccC-hhhccCccchHHHHHHHHHHHHhc-----cceeeEEEEecc----cccchhhhHhcchhH
Confidence 4665 5789999999998 457999999999999999999876 567899999766 358999999998887
Q ss_pred ccCcEEEEEEeeccccCCCcc----cccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHH
Q 009366 418 LGAKAVAYLNVDCAVQGPGFF----AGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFV 493 (536)
Q Consensus 418 ~~~~~~a~inlD~~~~g~~~~----~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~ 493 (536)
+ +++..-+.+-+.|.|-+.. ..+..+.+.++..+.+.-. +...+.+ ....|||-..|-
T Consensus 241 l-khvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~----s~~~~~d-------------F~p~G~DERQf~ 302 (435)
T COG4310 241 L-KHVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCG----SNFKAAD-------------FLPYGSDERQFC 302 (435)
T ss_pred H-hhhhcceEEEEecCCCCccceeccccchHHHHHHHHHHhcCC----cCceeee-------------cccCCCchhhcc
Confidence 7 5888889999988862222 1233344444444333211 1111111 113567777664
Q ss_pred hc-CCCeEEEeeeC--CCCCCCCCccccHHHHh
Q 009366 494 QH-AGVPSVDMYYG--KDFPVYHTALDTYTWIV 523 (536)
Q Consensus 494 ~~-~GIPs~~~~~~--~~~p~YHT~~Dt~d~v~ 523 (536)
.- .+.|+..+--+ ..+|-|||..|+++.|+
T Consensus 303 sPg~NLpvg~~~Rs~yG~f~~YHtSaDnL~fi~ 335 (435)
T COG4310 303 SPGFNLPVGGLQRSRYGDFDGYHTSADNLDFIS 335 (435)
T ss_pred CCCcCCchhhhhHhhcCCCccccCccccccccC
Confidence 41 14566655432 25788999999999876
No 38
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.46 E-value=5.2e-07 Score=79.14 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=55.8
Q ss_pred CcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecceecCCCCCCCCCCCCCCCCcccCcccccc
Q 009366 188 VNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEV 267 (536)
Q Consensus 188 idv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~~ 267 (536)
.+++||||||++|.|. +.+|+.+|+++||+|||+|++.... .. +. ...++
T Consensus 36 ~~l~gkIvLV~RG~Cs-F~~K~~nAq~aGA~avII~n~~~~~---~~----~~-----m~~~~----------------- 85 (117)
T cd04813 36 AEIDGKVALVLRGGCG-FLDKVMWAQRRGAKAVIVGDDEPGR---GL----IT-----MFSNG----------------- 85 (117)
T ss_pred CCcCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCcc---cc----ee-----cccCC-----------------
Confidence 4789999999999998 9999999999999999999765210 00 00 00000
Q ss_pred cCCCCCCceeecCHHHHHHHHHHcC
Q 009366 268 SKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 268 ~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
......||++.|++++++.|.+.++
T Consensus 86 ~~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 86 DTDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred CCCCcEEEEEEEcHHHHHHHHHhcc
Confidence 0123479999999999999988764
No 39
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.44 E-value=6.7e-07 Score=95.69 Aligned_cols=79 Identities=24% Similarity=0.300 Sum_probs=66.8
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCC-----CCc
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~-----g~~ 405 (536)
.|++++++|...+.+.|++++|+|+++. |+.|+.+|+|++|++++.|.+ .+.+|+++|.|+++.+||. |+.
T Consensus 61 ~nlia~~~g~~~~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~~ 137 (414)
T PRK12890 61 GNLFGRLPGRDPDLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALRE---AGIRPPHPLEVIAFTNEEGVRFGPSMI 137 (414)
T ss_pred CcEEEEeCCCCCCCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEecccccccCCccc
Confidence 5999999986434578999999999987 568999999999999998854 4557899999999999997 678
Q ss_pred chHHHHHH
Q 009366 406 GSTEWVEE 413 (536)
Q Consensus 406 GS~~~~~~ 413 (536)
||..+.+.
T Consensus 138 G~~~~~~~ 145 (414)
T PRK12890 138 GSRALAGT 145 (414)
T ss_pred cHHHHHcc
Confidence 99877553
No 40
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.40 E-value=8e-07 Score=95.13 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=65.2
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCC-----Cc
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG-----MI 405 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g-----~~ 405 (536)
.||+++++|.++..+.|++++|+|+++. |..|+.+|++++|++++.|.+ .+.+|+++|.|++|.+||.| +.
T Consensus 63 gNl~a~~~g~~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~---~~~~~~~~i~v~~~~dEE~~~f~~~~~ 139 (414)
T PRK12891 63 GNLFARRAGRDPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALND---AGIETERPVDVVIWTNEEGSRFAPSMV 139 (414)
T ss_pred CCEEEEecCCCCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEecccccCcCCcccc
Confidence 4999999987543479999999999987 568999999999999998864 46688999999999999975 57
Q ss_pred chHHH
Q 009366 406 GSTEW 410 (536)
Q Consensus 406 GS~~~ 410 (536)
||..+
T Consensus 140 Gs~~~ 144 (414)
T PRK12891 140 GSGVF 144 (414)
T ss_pred cHHHH
Confidence 99755
No 41
>PRK09133 hypothetical protein; Provisional
Probab=98.34 E-value=2.8e-06 Score=92.50 Aligned_cols=82 Identities=28% Similarity=0.336 Sum_probs=69.4
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
..||+++++|... .+.|++.+|+|.++ .|+.|+.+|+|++|++++.|. +.+.+|
T Consensus 88 ~~nli~~~~g~~~-~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~---~~~~~~ 163 (472)
T PRK09133 88 KGNLVARLRGTDP-KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLK---REGFKP 163 (472)
T ss_pred ceeEEEEecCCCC-CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHH---hcCCCC
Confidence 4799999988753 47899999999764 189999999999999988774 446678
Q ss_pred CceEEEEEecccC-CCCcchHHHHHHhhh
Q 009366 389 RRTIIFCSWDAEE-FGMIGSTEWVEENLV 416 (536)
Q Consensus 389 ~rti~f~~~~~eE-~g~~GS~~~~~~~~~ 416 (536)
+++|.|++..+|| .|..|+..+++++..
T Consensus 164 ~~~i~~~~~~dEE~~g~~G~~~l~~~~~~ 192 (472)
T PRK09133 164 KRDIILALTGDEEGTPMNGVAWLAENHRD 192 (472)
T ss_pred CCCEEEEEECccccCccchHHHHHHHHhh
Confidence 9999999999999 889999999887653
No 42
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.31 E-value=8.3e-06 Score=76.86 Aligned_cols=146 Identities=24% Similarity=0.225 Sum_probs=93.1
Q ss_pred EEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCc-c
Q 009366 349 LLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI-G 406 (536)
Q Consensus 349 ii~aH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~-G 406 (536)
++.+|+|+++ .|+.|+..|++++|.+++.|.+ .+.+++++|+|++..+||.|.. |
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~---~~~~~~~~i~~~~~~~EE~g~~~g 77 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKE---SGDDLPGNIIFLFTPDEEIGSIGG 77 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHH---TTTTCSSEEEEEEESTCCGTSTTH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHh---ccccccccccccccccccCCCcch
Confidence 5789999877 3899999999999999998864 4568999999999999999998 9
Q ss_pred hHHHHHHhhhcccCcEEEEEEeeccccCCCcccccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCC
Q 009366 407 STEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVD 486 (536)
Q Consensus 407 S~~~~~~~~~~~~~~~~a~inlD~~~~g~~~~~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 486 (536)
+.+++++... ...++-..+..|....+. .....++.+.+.+.++.+.+.. . ........++
T Consensus 78 ~~~l~~~~~~-~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~----~~~~~~~~g~ 138 (189)
T PF01546_consen 78 AKHLLEEGAF-FGLHPDYVIIGEPTGKGG-VGSDNDPPLVQALQAAAQEVGG-------------E----PPEPVASGGG 138 (189)
T ss_dssp HHHHHHHCEE-EEEEESEEEECECETTSE-EEHCTCHHHHHHHHHHHHHTTS-------------S----EEEEEEESSS
T ss_pred hhhhhhhccc-cccccccccccccccccc-ccccccHHHHHHHHHHHHHHhh-------------c----cccccceecc
Confidence 9998887311 011122222223222211 0122344466677777665421 0 0001112467
Q ss_pred CchHHHHh--cCCCeEEEeeeCCCCCCCCCcccc
Q 009366 487 SDFASFVQ--HAGVPSVDMYYGKDFPVYHTALDT 518 (536)
Q Consensus 487 sD~~~F~~--~~GIPs~~~~~~~~~p~YHT~~Dt 518 (536)
+|...|.. ..|+|.+.+..+. ...|++...
T Consensus 139 tD~~~~~~~~~~~~~~i~~G~~~--~~~H~~~E~ 170 (189)
T PF01546_consen 139 TDAGFLAEVKGLGIPAIGFGPGG--SNAHTPDEY 170 (189)
T ss_dssp STHHHHHCHHHTTEEEEEEESCE--ESTTSTT-E
T ss_pred ccchhhhhhhccccceeeeCCCC--CCCCCCCcE
Confidence 88887773 4799999887652 455877654
No 43
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.24 E-value=3.1e-06 Score=90.39 Aligned_cols=79 Identities=32% Similarity=0.442 Sum_probs=66.8
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCC-----Cc
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG-----MI 405 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g-----~~ 405 (536)
.||+++++|..++.+.|++.+|+|+++. |..|+..|+|++|.+++.|.+ .+++++++|+|+++.+||.| +.
T Consensus 63 ~n~~a~~~g~~~~~~~l~l~~H~DtVp~~g~~dgk~gvaa~l~a~~~l~~---~~~~~~~~v~~~~~~dEE~g~~~~~~~ 139 (412)
T PRK12893 63 GNLFGRRAGTDPDAPPVLIGSHLDTQPTGGRFDGALGVLAALEVVRTLND---AGIRTRRPIEVVSWTNEEGARFAPAML 139 (412)
T ss_pred CcEEEEeCCCCCCCCEEEEEecccCCCCCCcccchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEEccccccccccccc
Confidence 4999999986534578999999999986 457889999999999998854 45678899999999999986 88
Q ss_pred chHHHHHH
Q 009366 406 GSTEWVEE 413 (536)
Q Consensus 406 GS~~~~~~ 413 (536)
|+..+.+.
T Consensus 140 G~~~~~~~ 147 (412)
T PRK12893 140 GSGVFTGA 147 (412)
T ss_pred cHHHHhCc
Confidence 99887754
No 44
>PRK07906 hypothetical protein; Provisional
Probab=98.23 E-value=4.5e-06 Score=89.61 Aligned_cols=82 Identities=28% Similarity=0.375 Sum_probs=68.3
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
..||+++++|..+..+.|++.+|+|+++. |+.|+.+|++++|++++.|.+ .+.+|
T Consensus 51 ~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~---~~~~~ 127 (426)
T PRK07906 51 RANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLAR---TGRRP 127 (426)
T ss_pred ceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cCCCC
Confidence 47999999987544578999999998752 889999999999999998854 46678
Q ss_pred CceEEEEEecccCCC-CcchHHHHHHhh
Q 009366 389 RRTIIFCSWDAEEFG-MIGSTEWVEENL 415 (536)
Q Consensus 389 ~rti~f~~~~~eE~g-~~GS~~~~~~~~ 415 (536)
+++|.|+++.+||.| ..|+..+++++.
T Consensus 128 ~~~i~~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 128 PRDLVFAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred CccEEEEEecCcccchhhhHHHHHHHHH
Confidence 999999999999986 469988877643
No 45
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.21 E-value=4.6e-06 Score=89.26 Aligned_cols=79 Identities=30% Similarity=0.422 Sum_probs=66.1
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCC-----CCc
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~-----g~~ 405 (536)
.||+++++|...+.+.|++.+|+|+++. |..|+..|+|++|.+++.|. +.+++|+++|.|++..+||. |+.
T Consensus 60 ~nl~a~~~g~~~~~~~l~l~gH~DtVp~~g~~d~k~g~aa~l~a~~~l~---~~~~~~~~~i~~~~~~dEE~g~~g~~~~ 136 (413)
T PRK09290 60 GNLFGRLEGRDPDAPAVLTGSHLDTVPNGGRFDGPLGVLAGLEAVRTLN---ERGIRPRRPIEVVAFTNEEGSRFGPAML 136 (413)
T ss_pred CcEEEEecCCCCCCCEEEEecCccCCCCCCCcCCHHHHHHHHHHHHHHH---HcCCCCCCCeEEEEEcCCccccccCccc
Confidence 5999999875433578999999999986 56788999999999999875 34667889999999999998 578
Q ss_pred chHHHHHH
Q 009366 406 GSTEWVEE 413 (536)
Q Consensus 406 GS~~~~~~ 413 (536)
|++.+++.
T Consensus 137 G~~~~~~~ 144 (413)
T PRK09290 137 GSRVFTGA 144 (413)
T ss_pred cHHHHHcc
Confidence 99888754
No 46
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.19 E-value=7.3e-06 Score=72.00 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=63.7
Q ss_pred CcceeEEEecC--CChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecceec
Q 009366 164 SAYGKVVFVNY--GREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMR 241 (536)
Q Consensus 164 ~v~g~lVyv~~--G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v~~ 241 (536)
.+.|++|...- ++ ++... ..+++|||||++.|.+. +..|+.+|+++||+|+|+|++..... .+.
T Consensus 16 ~~~~~~~~~~~~~~C-~~~~~----~~~v~GkIvL~~rg~c~-f~~k~~~a~~aGA~gvIi~~~~~~~~--~~~------ 81 (118)
T cd04818 16 VVLAGAAPASNTDGC-TAFTN----AAAFAGKIALIDRGTCN-FTVKVLNAQNAGAIAVIVANNVAGGA--PIT------ 81 (118)
T ss_pred ceeEEEecCCccccc-CCCCc----CCCCCCEEEEEECCCCC-HHHHHHHHHHCCCeEEEEEECCCCCc--cee------
Confidence 36777776632 11 11111 24799999999999887 88999999999999999998753200 000
Q ss_pred CCCCCCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcC
Q 009366 242 GVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (536)
Q Consensus 242 ~~Gdp~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (536)
++++ .....||++.|+++++++|++.+.
T Consensus 82 -~~~~----------------------~~~~~iP~v~V~~~~g~~l~~~l~ 109 (118)
T cd04818 82 -MGGD----------------------DPDITIPAVMISQADGDALKAALA 109 (118)
T ss_pred -ccCC----------------------CCCCEEeEEEecHHHHHHHHHHHh
Confidence 0100 012359999999999999999986
No 47
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.18 E-value=5.8e-06 Score=88.29 Aligned_cols=78 Identities=31% Similarity=0.484 Sum_probs=66.1
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCC-----CCc
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~-----g~~ 405 (536)
.|++++++|.. +.+.|++++|+|+++. |-.|+-.|+|++|++++.|. +.|++|+++|.|+++.+||. |+.
T Consensus 62 ~nl~a~~~g~~-~~~~l~l~gH~DtVp~~g~~dg~~Gvaa~l~a~~~l~---~~~~~~~~~i~~~~~~dEE~~~~~~~~~ 137 (412)
T PRK12892 62 GNVFGRLPGPG-PGPALLVGSHLDSQNLGGRYDGALGVVAGLEAARALN---EHGIATRHPLDVVAWCDEEGSRFTPGFL 137 (412)
T ss_pred CcEEEEecCCC-CCCeEEEEccccCCCCCCcccchHHHHHHHHHHHHHH---HcCCCCCCCeEEEEecCcccccccCccc
Confidence 49999999865 3478999999999987 44778889999999988775 45778999999999999998 578
Q ss_pred chHHHHHH
Q 009366 406 GSTEWVEE 413 (536)
Q Consensus 406 GS~~~~~~ 413 (536)
||+.++++
T Consensus 138 Gs~~~~~~ 145 (412)
T PRK12892 138 GSRAYAGR 145 (412)
T ss_pred cHHHHHcC
Confidence 99998853
No 48
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.15 E-value=1.1e-05 Score=83.37 Aligned_cols=79 Identities=28% Similarity=0.347 Sum_probs=70.8
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (536)
.++++.+++|+++....|++.+|.|.++. |++|..+-.++.||++|.| ...|.+
T Consensus 74 ~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L---~~~g~k 150 (420)
T KOG2275|consen 74 KYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNL---KASGFK 150 (420)
T ss_pred eeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHH---HhcCCC
Confidence 78999999999977899999999997651 8999999999999998876 456899
Q ss_pred CCceEEEEEecccCCC-CcchHHHHH
Q 009366 388 PRRTIIFCSWDAEEFG-MIGSTEWVE 412 (536)
Q Consensus 388 p~rti~f~~~~~eE~g-~~GS~~~~~ 412 (536)
|+|||...|--+||.| ..|...+++
T Consensus 151 p~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 151 PKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred cCceEEEEecCchhccCcchHHHHhh
Confidence 9999999999999986 899999988
No 49
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.13 E-value=6.5e-06 Score=72.98 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=55.7
Q ss_pred CCcccCcEEEEEeCCC-ccchHHHHHHHHcCCeEEEEeecCCccCCCcceecceecCCCCCCCCCCCCCCCCcccCcccc
Q 009366 187 GVNVSGCVVMARKGSV-LSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDS 265 (536)
Q Consensus 187 gidv~GkIvlv~~g~~-~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~ 265 (536)
+.+++|||||++++.+ . +..|+.+|++.||+|+|++++..+.. . . .
T Consensus 47 ~~~v~GkIVlc~~~~~~~-~~~k~~~~~~~GA~gvI~~~~~~~~~--~--------------~-----------~----- 93 (126)
T cd02120 47 PSKVKGKIVLCDRGGNTS-RVAKGDAVKAAGGAGMILANDPTDGL--D--------------V-----------V----- 93 (126)
T ss_pred hhhccccEEEEeCCCCcc-HHHHHHHHHHcCCcEEEEEecCCCCc--e--------------e-----------c-----
Confidence 3579999999999887 5 78999999999999999998763210 0 0 0
Q ss_pred cccCCCCCCceeecCHHHHHHHHHHcCC
Q 009366 266 EVSKRFPKIPSLPLSFENAQIILGSLWG 293 (536)
Q Consensus 266 ~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (536)
.....||++.|+++++++|++.++.
T Consensus 94 ---~~~~~iP~v~I~~~~g~~l~~y~~~ 118 (126)
T cd02120 94 ---ADAHVLPAVHVDYEDGTAILSYINS 118 (126)
T ss_pred ---ccccccceEEECHHHHHHHHHHHHc
Confidence 0113599999999999999999864
No 50
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.11 E-value=1.1e-05 Score=86.29 Aligned_cols=80 Identities=28% Similarity=0.293 Sum_probs=67.6
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC-------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCce
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~-------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rt 391 (536)
..||+|+++|.. .+.|++.+|+|+++ .|+.|+.+|++++|++++.|.+. +.++..+
T Consensus 87 ~~~lia~~~g~~--~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~---~~~~~~~ 161 (410)
T PRK06133 87 GDMVVATFKGTG--KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQL---GFKDYGT 161 (410)
T ss_pred CCeEEEEECCCC--CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHc---CCCCCCC
Confidence 369999998853 46899999999875 27789999999999999988543 4567789
Q ss_pred EEEEEecccCCCCcchHHHHHHhh
Q 009366 392 IIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 392 i~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
|+|++..+||.|..|+..++++..
T Consensus 162 i~~~~~~dEE~g~~G~~~~~~~~~ 185 (410)
T PRK06133 162 LTVLFNPDEETGSPGSRELIAELA 185 (410)
T ss_pred EEEEEECCcccCCccHHHHHHHHh
Confidence 999999999999899999997743
No 51
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.11 E-value=1e-05 Score=72.20 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=34.7
Q ss_pred cccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecC
Q 009366 189 NVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEW 226 (536)
Q Consensus 189 dv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~ 226 (536)
+++||||||++|.|. +.+|+++|+++||+|||||++.
T Consensus 53 ~~~g~IaLv~rg~c~-f~~K~~nA~~aGA~aviiyn~~ 89 (129)
T cd02124 53 DLSGYIVLVRRGTCT-FATKAANAAAKGAKYVLIYNNG 89 (129)
T ss_pred cccCeEEEEECCCCC-HHHHHHHHHHcCCcEEEEEECC
Confidence 689999999999998 9999999999999999999765
No 52
>PRK08596 acetylornithine deacetylase; Validated
Probab=98.11 E-value=1.1e-05 Score=86.48 Aligned_cols=80 Identities=28% Similarity=0.305 Sum_probs=67.3
Q ss_pred eeEEEEEcCCCCC-CcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCC
Q 009366 332 HNVFAVIRGLEEP-NRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (536)
Q Consensus 332 ~Nvi~~i~G~~~~-~~~vii~aH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (536)
.||+++++|+... .+.|++.+|+|+++ .|+.|+.+|+|++|.+++.|.+ .+++
T Consensus 63 ~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~---~~~~ 139 (421)
T PRK08596 63 PNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHE---AGIE 139 (421)
T ss_pred ceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHH---cCCC
Confidence 6999999986432 25799999999742 2899999999999999998854 4667
Q ss_pred CCceEEEEEecccCCCCcchHHHHHHh
Q 009366 388 PRRTIIFCSWDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 388 p~rti~f~~~~~eE~g~~GS~~~~~~~ 414 (536)
++++|.|++..+||.|..|+.+++++.
T Consensus 140 ~~~~v~~~~~~dEE~g~~G~~~~~~~~ 166 (421)
T PRK08596 140 LPGDLIFQSVIGEEVGEAGTLQCCERG 166 (421)
T ss_pred CCCcEEEEEEeccccCCcCHHHHHhcC
Confidence 889999999999999999999988763
No 53
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.07 E-value=8.3e-06 Score=85.46 Aligned_cols=78 Identities=27% Similarity=0.330 Sum_probs=65.3
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC----------------CC----CCChhHHHHHHHHHHHHHHHHHcCCCCCc
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY----------------GA----IDPNSGTAALLDIARRYALLMRLGWSPRR 390 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~----------------Ga----~D~~sG~a~lle~ar~l~~~~~~g~~p~r 390 (536)
..|++++++|+. +.+.|++.+|+|+++. |+ .|+.+|+|++|++++.|.+. + .|++
T Consensus 49 ~~~~~~~~~g~~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~---~-~~~~ 123 (361)
T TIGR01883 49 DNNLIARLPGTV-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTE---E-TPHG 123 (361)
T ss_pred CceEEEEEeCCC-CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhc---C-CCCC
Confidence 479999998874 3578999999999873 44 69999999999999988552 3 4678
Q ss_pred eEEEEEecccCCCCcchHHHHHH
Q 009366 391 TIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 391 ti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
+|+|+++.+||.|..|+..|.+.
T Consensus 124 ~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 124 TIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred CEEEEEEcccccCchhHhHhChh
Confidence 99999999999999999988754
No 54
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=98.07 E-value=1.2e-05 Score=84.74 Aligned_cols=78 Identities=26% Similarity=0.277 Sum_probs=65.7
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
.|+++.++|.. +.+.|++.+|+|+++. |+.|+.+|+|++|++++.|.+ .+.++
T Consensus 52 ~~~~~~~~g~~-~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~---~~~~~ 127 (375)
T TIGR01910 52 GKVVVKEPGNG-NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIRE---AGIKP 127 (375)
T ss_pred cceEEeccCCC-CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHH---cCCCC
Confidence 46888888853 3578999999998763 688999999999999998754 34467
Q ss_pred CceEEEEEecccCCCCcchHHHHHH
Q 009366 389 RRTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 389 ~rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
+++|+|++..+||.|..|+..++++
T Consensus 128 ~~~i~~~~~~~EE~g~~G~~~~~~~ 152 (375)
T TIGR01910 128 NGNIILQSVVDEESGEAGTLYLLQR 152 (375)
T ss_pred CccEEEEEEcCcccCchhHHHHHHc
Confidence 8999999999999999999999876
No 55
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=98.06 E-value=1.9e-05 Score=83.77 Aligned_cols=80 Identities=23% Similarity=0.241 Sum_probs=66.3
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (536)
..||++.++|.. +.+.|++.+|+|+++. |+.|+..|++++|.+++.|.+ .+.+
T Consensus 63 ~~nl~~~~~g~~-~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~---~~~~ 138 (400)
T PRK13983 63 RPNIVAKIPGGD-GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMD---LGIR 138 (400)
T ss_pred CccEEEEecCCC-CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHH---hCCC
Confidence 489999998864 3469999999998762 689999999999999887754 4557
Q ss_pred CCceEEEEEecccCCCC-cchHHHHHHh
Q 009366 388 PRRTIIFCSWDAEEFGM-IGSTEWVEEN 414 (536)
Q Consensus 388 p~rti~f~~~~~eE~g~-~GS~~~~~~~ 414 (536)
++++|.|++..+||.|. .|...+++.+
T Consensus 139 ~~~~v~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 139 PKYNLGLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred CCCcEEEEEEeccccCCcccHHHHHhhc
Confidence 88999999999999887 4888888763
No 56
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.97 E-value=4.1e-05 Score=80.18 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=65.2
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
..||++.+.|+. .+.|++.+|+|.++ .|+.|+-+|+|++|.+++.|.+. +.
T Consensus 46 ~~nl~~~~~~~~--~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 118 (364)
T TIGR01892 46 KSNLVAVIGPSG--AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE-----QL 118 (364)
T ss_pred cccEEEEecCCC--CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc-----Cc
Confidence 479999996642 46899999999764 18999999999999999998653 24
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhh
Q 009366 389 RRTIIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 389 ~rti~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
+++|.|++..+||.|..|+..++++..
T Consensus 119 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 119 KKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred CCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 678999999999999999999988753
No 57
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.96 E-value=3.8e-05 Score=82.42 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=64.4
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (536)
..|++|+++|.. +.+.|++.+|+|.++ .|+.|+.+|+|++|.+++.|.+. +++++
T Consensus 71 ~~nlia~~~g~~-~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~---~~~~~ 146 (427)
T PRK13013 71 RWNLVARRQGAR-DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAV---YPDFA 146 (427)
T ss_pred cceEEEEecCCC-CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHh---CCCCC
Confidence 369999998864 357899999999764 18999999999999999988653 56778
Q ss_pred ceEEEEEecccCCCCcchHHHHHH
Q 009366 390 RTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 390 rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
++|+|++..+||.|..|...|+.+
T Consensus 147 ~~v~~~~~~dEE~g~~~g~~~l~~ 170 (427)
T PRK13013 147 GSIEISGTADEESGGFGGVAYLAE 170 (427)
T ss_pred ccEEEEEEeccccCChhHHHHHHh
Confidence 999999999999887655555544
No 58
>PRK13381 peptidase T; Provisional
Probab=97.95 E-value=2.6e-05 Score=83.16 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=65.2
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC------------------------------------------------CC-
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY------------------------------------------------GA- 361 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~------------------------------------------------Ga- 361 (536)
..||+|+++|+.+..+.|++.+|+|+++. |+
T Consensus 54 ~~nvi~~~~g~~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~ 133 (404)
T PRK13381 54 HAIVTAKLPGNTPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTS 133 (404)
T ss_pred CeEEEEEEecCCCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCcc
Confidence 35999999987532389999999998852 45
Q ss_pred ---CCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHH
Q 009366 362 ---IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 362 ---~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
.|+.+|+|++|.+++.|.+. + .++.+|.|++..+||.|..|+..++.+
T Consensus 134 ~~g~DmKgg~aa~l~a~~~l~~~---~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 134 VLGADNKAAIAVVMTLLENLTEN---E-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred ccccccHHHHHHHHHHHHHHHhc---C-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 89999999999999988653 2 356799999999999998999988754
No 59
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4e-05 Score=80.78 Aligned_cols=183 Identities=17% Similarity=0.200 Sum_probs=112.1
Q ss_pred eeeeEEEEEcCC-----CCC-CcEEEEeeccCCcCC------CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEe
Q 009366 330 TIHNVFAVIRGL-----EEP-NRYVLLGNHRDAWTY------GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (536)
Q Consensus 330 ~~~Nvi~~i~G~-----~~~-~~~vii~aH~Ds~~~------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~ 397 (536)
..+||...++.. .++ +++||..+..|+... ||.-.-++...+|..||+|++.+.- -..+|++.|++|
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai-~nl~rnV~f~~f 234 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAI-NNLNRNVFFAFF 234 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCccc-ccccceeEEEEe
Confidence 446666666442 233 689999999998653 8877899999999999999653221 235899999999
Q ss_pred cccCCCCcchHHHHHHhhhcccCc---------EEEEEEeeccccC--CCcccccC----hhHHHHHHHHHhhcCC-CCC
Q 009366 398 DAEEFGMIGSTEWVEENLVNLGAK---------AVAYLNVDCAVQG--PGFFAGAT----PQLDDILIEVTKMVKD-PES 461 (536)
Q Consensus 398 ~~eE~g~~GS~~~~~~~~~~~~~~---------~~a~inlD~~~~g--~~~~~~~~----p~l~~~~~~~~~~v~~-p~~ 461 (536)
.||-++.+||+.++-+.. ..+- +..++.+-.++.+ ..+++.-. ..+.+.+.++.+.+.. +..
T Consensus 235 ~get~~ylgS~r~~yeme--~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs 312 (596)
T KOG2657|consen 235 NGETLDYLGSGRAAYEME--NGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRS 312 (596)
T ss_pred ecceeeeccchhhhhHhh--cCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccc
Confidence 999999999998776542 1122 3333344444443 33333222 2444444555444332 110
Q ss_pred CCCcceecccCCCCccccccCCCCCCchHHHHh-cCCCeEEEeeeCC---CCCCCCCccccHHHHh
Q 009366 462 ESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAGVPSVDMYYGK---DFPVYHTALDTYTWIV 523 (536)
Q Consensus 462 ~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~~GIPs~~~~~~~---~~p~YHT~~Dt~d~v~ 523 (536)
-...+ +.+.+ .. ..-..|-...|++ ...+-++.+.... .+.+||+.+|+.||++
T Consensus 313 ~~f~l----l~~s~---~s-~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin 370 (596)
T KOG2657|consen 313 HAFDL----LKPSG---SS-DRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENIN 370 (596)
T ss_pred cCeee----ecCCC---CC-CCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhcc
Confidence 01111 11111 00 1123355667998 4578888887532 4789999999999986
No 60
>PRK06837 acetylornithine deacetylase; Provisional
Probab=97.94 E-value=3.4e-05 Score=82.93 Aligned_cols=80 Identities=26% Similarity=0.245 Sum_probs=65.7
Q ss_pred eeeeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCC
Q 009366 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGW 386 (536)
Q Consensus 330 ~~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~ 386 (536)
...||++.++|..+..+.|++.+|+|+++. |+.|+.+|++++|.+++.|. +.|.
T Consensus 82 ~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~---~~~~ 158 (427)
T PRK06837 82 GAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALR---AAGL 158 (427)
T ss_pred CCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHH---HcCC
Confidence 358999999986533578999999998753 78899999999999988774 4466
Q ss_pred CCCceEEEEEecccCCCCcchHHHHH
Q 009366 387 SPRRTIIFCSWDAEEFGMIGSTEWVE 412 (536)
Q Consensus 387 ~p~rti~f~~~~~eE~g~~GS~~~~~ 412 (536)
+|+++|.|++..+||.+..|+...+.
T Consensus 159 ~~~~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 159 APAARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred CCCCcEEEEEEeccccCCHhHHHHHh
Confidence 78899999999999987778766554
No 61
>PRK09104 hypothetical protein; Validated
Probab=97.90 E-value=4.5e-05 Score=82.92 Aligned_cols=81 Identities=21% Similarity=0.151 Sum_probs=66.9
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC----------------------------CCCCCChhHHHHHHHHHHHHHHHHH
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------------YGAIDPNSGTAALLDIARRYALLMR 383 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~----------------------------~Ga~D~~sG~a~lle~ar~l~~~~~ 383 (536)
.||+++++|++...+.|++.+|+|.++ .|+.|+..|+|++|++++.|.+.
T Consensus 69 ~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~-- 146 (464)
T PRK09104 69 PMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAV-- 146 (464)
T ss_pred CEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHh--
Confidence 699999988644467999999999732 16799999999999999998764
Q ss_pred cCCCCCceEEEEEecccCCCCcchHHHHHHhh
Q 009366 384 LGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 384 ~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
+-+++.+|.|++.+.||.|..|..+|+.+..
T Consensus 147 -~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 177 (464)
T PRK09104 147 -TGSLPVRVTILFEGEEESGSPSLVPFLEANA 177 (464)
T ss_pred -cCCCCCcEEEEEECccccCCccHHHHHHhhH
Confidence 2245678999999999999999999988643
No 62
>PRK07473 carboxypeptidase; Provisional
Probab=97.90 E-value=5.1e-05 Score=80.21 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=66.4
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC-------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceE
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTI 392 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~-------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti 392 (536)
.||++.++|.....+.|++.+|+|+++ .|+.|+.+|+|++|.+++.|.+. +.+++.+|
T Consensus 62 ~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~---~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARA---GITTPLPI 138 (376)
T ss_pred CeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHc---CCCCCCCE
Confidence 589999976433357899999999763 18999999999999999988653 33456689
Q ss_pred EEEEecccCCCCcchHHHHHHhh
Q 009366 393 IFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 393 ~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
.|++..+||.|..|+..++++..
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~ 161 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEA 161 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhh
Confidence 99999999999999999998653
No 63
>PRK07907 hypothetical protein; Provisional
Probab=97.89 E-value=6.6e-05 Score=81.28 Aligned_cols=78 Identities=23% Similarity=0.161 Sum_probs=65.9
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (536)
..||+++++|.. +.+.|++.+|+|.++. |+.|+.+|+|++|.+++.| +.+
T Consensus 70 ~~nl~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l------~~~ 142 (449)
T PRK07907 70 APAVIGTRPAPP-GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL------GGD 142 (449)
T ss_pred CCEEEEEecCCC-CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh------ccC
Confidence 469999998753 3578999999997641 8999999999999999987 235
Q ss_pred CCceEEEEEecccCCCCcchHHHHHHhh
Q 009366 388 PRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 388 p~rti~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
++++|.|++.+.||.|..|+.++++++.
T Consensus 143 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 170 (449)
T PRK07907 143 LPVGVTVFVEGEEEMGSPSLERLLAEHP 170 (449)
T ss_pred CCCcEEEEEEcCcccCCccHHHHHHhch
Confidence 6789999999999999999999998753
No 64
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.87 E-value=9.1e-05 Score=75.46 Aligned_cols=129 Identities=20% Similarity=0.231 Sum_probs=83.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccccC------
Q 009366 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG------ 434 (536)
Q Consensus 361 a~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~~g------ 434 (536)
+.||-.|+++++|++|.+++. ..+.+|.|+|..-||.|+.|+...+.+...+ ..|.+|..-..
T Consensus 132 alDdR~g~~~lle~l~~l~~~-----~~~~~v~~v~tvqEEvG~rGA~~aa~~i~PD------~ai~vD~~~a~d~~~~~ 200 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK-----ELDVDVYFVFTVQEEVGLRGAKTAAFRIKPD------IAIAVDVTPAGDTPGSD 200 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS-----S-SSEEEEEEESSCTTTSHHHHHHHHHH-CS------EEEEEEEEEESSSTTST
T ss_pred eCCchhHHHHHHHHHHHHhhc-----CCCceEEEEEEeeeeecCcceeecccccCCC------EEEEEeeeccCCCCCCc
Confidence 679999999999999988542 3459999999999999999998765543222 34566654321
Q ss_pred -C--------Ccc-----cccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHHh-cCCCe
Q 009366 435 -P--------GFF-----AGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAGVP 499 (536)
Q Consensus 435 -~--------~~~-----~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~~GIP 499 (536)
. .+. ...++.+.+.+.+++++..-|. + + ......++|-..|.. ..|||
T Consensus 201 ~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~-------Q-~---------~~~~~ggTDa~~~~~~~~Gi~ 263 (292)
T PF05343_consen 201 EKEQGLGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPY-------Q-R---------EVFSGGGTDAGAIQLSGGGIP 263 (292)
T ss_dssp TTTSCTTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--E-------E-E---------EEESSSSSTHHHHHTSTTSSE
T ss_pred hhhccCCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCe-------E-E---------EecCCcccHHHHHHHcCCCCC
Confidence 0 111 1234567777777777643321 1 0 011257889888864 24999
Q ss_pred EEEeeeCCCCCCCCCccccH
Q 009366 500 SVDMYYGKDFPVYHTALDTY 519 (536)
Q Consensus 500 s~~~~~~~~~p~YHT~~Dt~ 519 (536)
++.++.. -.+.||+..+.
T Consensus 264 t~~i~iP--~ry~Hs~~e~~ 281 (292)
T PF05343_consen 264 TAVISIP--CRYMHSPVEVI 281 (292)
T ss_dssp EEEEEEE--EBSTTSTTEEE
T ss_pred EEEEecc--cccCCCcceEE
Confidence 9999864 34458876553
No 65
>PRK08262 hypothetical protein; Provisional
Probab=97.86 E-value=7e-05 Score=81.92 Aligned_cols=79 Identities=28% Similarity=0.425 Sum_probs=66.3
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC-------------------------CCCCCChhHHHHHHHHHHHHHHHHHcCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------------YGAIDPNSGTAALLDIARRYALLMRLGW 386 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~-------------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~ 386 (536)
.|+++.++|..+..+.|++.+|+|.++ .|+.|+.+|+|++|.+++.|.+ .+.
T Consensus 98 ~~vv~~~~g~~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~---~~~ 174 (486)
T PRK08262 98 HSLLYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLA---QGF 174 (486)
T ss_pred ccEEEEEECCCCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHH---cCC
Confidence 689999988753237899999999763 1899999999999999998864 355
Q ss_pred CCCceEEEEEecccCCCCcchHHHHHH
Q 009366 387 SPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 387 ~p~rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
+++++|+|++..+||.|..|+.++++.
T Consensus 175 ~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 175 QPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCCCeEEEEEecccccCCcCHHHHHHH
Confidence 688899999999999998899988765
No 66
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.86 E-value=5e-05 Score=82.85 Aligned_cols=75 Identities=23% Similarity=0.120 Sum_probs=60.1
Q ss_pred eeEEEEEcCCC--CCCcEEEEeeccCCcCCC--------------------------C---CCChhHHHHHHHHHHHHHH
Q 009366 332 HNVFAVIRGLE--EPNRYVLLGNHRDAWTYG--------------------------A---IDPNSGTAALLDIARRYAL 380 (536)
Q Consensus 332 ~Nvi~~i~G~~--~~~~~vii~aH~Ds~~~G--------------------------a---~D~~sG~a~lle~ar~l~~ 380 (536)
.||++.++|.. +..+.|++.+|+|+++.| + .|+..|++++|++++.
T Consensus 47 ~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~--- 123 (477)
T TIGR01893 47 GNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED--- 123 (477)
T ss_pred CeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---
Confidence 69999998753 234689999999987653 2 2999999999998663
Q ss_pred HHHcCCCCCceEEEEEecccCCCCcchHHHHHH
Q 009366 381 LMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 381 ~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
...++++|.++++.+||.|+.||+.+..+
T Consensus 124 ----~~~~~~~i~~~~~~dEE~g~~Gs~~l~~~ 152 (477)
T TIGR01893 124 ----NNLKHPPLELLFTVDEETGMDGALGLDEN 152 (477)
T ss_pred ----CCCCCCCEEEEEEeccccCchhhhhcChh
Confidence 22356799999999999999999998654
No 67
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.85 E-value=5.5e-05 Score=79.77 Aligned_cols=76 Identities=30% Similarity=0.306 Sum_probs=64.2
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
.|+++.+ |.. .+.|++.+|+|.++. |+.|+..|+|++|.+++.|.+ .+.++
T Consensus 49 ~~l~a~~-g~~--~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~---~~~~~ 122 (377)
T PRK08588 49 ANLVAEI-GSG--SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKE---QGQLL 122 (377)
T ss_pred ceEEEEe-CCC--CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHH---cCCCC
Confidence 6999998 433 368999999997652 677999999999999997754 35578
Q ss_pred CceEEEEEecccCCCCcchHHHHHH
Q 009366 389 RRTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 389 ~rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
+++|.|++..+||.|..|+..++++
T Consensus 123 ~~~i~l~~~~dEE~g~~G~~~~~~~ 147 (377)
T PRK08588 123 NGTIRLLATAGEEVGELGAKQLTEK 147 (377)
T ss_pred CCcEEEEEEcccccCchhHHHHHhc
Confidence 8999999999999999999999886
No 68
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=97.85 E-value=4.2e-05 Score=81.80 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=77.3
Q ss_pred CCceeecCHHHHHHHHHHcCCCCcccccccccccCCcccCCCceEEEEEEeeeeeeeeeeeEEEEEcCCCCC-CcEEEEe
Q 009366 273 KIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEP-NRYVLLG 351 (536)
Q Consensus 273 ~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~gp~~~~v~l~~~~~~~~~~~~Nvi~~i~G~~~~-~~~vii~ 351 (536)
.||+.+=-.+.|+.|.+.|..-. ...|.+ + ....||+|+++|.... .+.|++.
T Consensus 25 ~~ps~~~~~~~a~~l~~~l~~lG-------------------~~~v~~--d-----~~~gnv~~~~~~~~~~~~~~i~~~ 78 (410)
T TIGR01882 25 TCPSTPGQLTFGNMLVDDLKSLG-------------------LQDAHY--D-----EKNGYVIATIPSNTDKDVPTIGFL 78 (410)
T ss_pred CCCCCHhHHHHHHHHHHHHHHcC-------------------CceEEE--c-----CCceEEEEEecCCCCCCCCEEEEE
Confidence 46666655667777777774311 001222 2 2258999999986431 2799999
Q ss_pred eccCCcCC------------------------------------------------C----CCCChhHHHHHHHHHHHHH
Q 009366 352 NHRDAWTY------------------------------------------------G----AIDPNSGTAALLDIARRYA 379 (536)
Q Consensus 352 aH~Ds~~~------------------------------------------------G----a~D~~sG~a~lle~ar~l~ 379 (536)
||+|++.. | +.|+.+|+|+||.+++.|.
T Consensus 79 aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~ 158 (410)
T TIGR01882 79 AHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLI 158 (410)
T ss_pred EecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHH
Confidence 99998751 1 2588899999999999986
Q ss_pred HHHHcCCCCCceEEEEEecccCCCCcchHHHHH
Q 009366 380 LLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVE 412 (536)
Q Consensus 380 ~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~ 412 (536)
+.. + .++.+|+|++..+||.| .|+..+..
T Consensus 159 e~~--~-~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 159 NHP--E-IKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred hCC--C-CCCCCEEEEEECcccCC-cCcchhhh
Confidence 531 1 35678999999999988 58877754
No 69
>PRK06915 acetylornithine deacetylase; Validated
Probab=97.84 E-value=6.4e-05 Score=80.61 Aligned_cols=79 Identities=25% Similarity=0.286 Sum_probs=65.3
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (536)
..||+|+++|.. +.+.|++.+|+|.++ .|+.|+.+|++++|.+++.|.+ .+++
T Consensus 80 ~~nlia~~~g~~-~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 155 (422)
T PRK06915 80 SPNIVATLKGSG-GGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIE---SGIE 155 (422)
T ss_pred CceEEEEEcCCC-CCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHH---cCCC
Confidence 489999998864 357899999999764 1888999999999998887754 4567
Q ss_pred CCceEEEEEecccCCCCcchHHHHHH
Q 009366 388 PRRTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 388 p~rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
++.+|.|++..+||.|..|+...+.+
T Consensus 156 ~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 156 LKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred CCCcEEEEEecccccCCcchHHHHhc
Confidence 78899999999999888898877664
No 70
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=97.79 E-value=9.1e-05 Score=78.84 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=65.5
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (536)
..|+++.++|.....+.|++.+|+|.++. |+.|+.+|+|++|.+++.|.+ .+.+
T Consensus 57 ~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~---~~~~ 133 (400)
T TIGR01880 57 KPVVVLTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKA---SGFK 133 (400)
T ss_pred ceeEEEEEecCCCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHH---cCCC
Confidence 46999999886432368999999997641 788999999999999998854 3556
Q ss_pred CCceEEEEEecccCCCC-cchHHHHHH
Q 009366 388 PRRTIIFCSWDAEEFGM-IGSTEWVEE 413 (536)
Q Consensus 388 p~rti~f~~~~~eE~g~-~GS~~~~~~ 413 (536)
++++|.|++..+||.|. .|+.+++++
T Consensus 134 ~~~~v~l~~~~dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 134 FKRTIHISFVPDEEIGGHDGMEKFAKT 160 (400)
T ss_pred CCceEEEEEeCCcccCcHhHHHHHHHh
Confidence 78999999999999875 599888865
No 71
>PRK07338 hypothetical protein; Provisional
Probab=97.79 E-value=7.1e-05 Score=79.67 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=66.1
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-------------------CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceE
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-------------------GAIDPNSGTAALLDIARRYALLMRLGWSPRRTI 392 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti 392 (536)
.||+|+++|.. .+.|++.+|+|.++. |+.|+.+|+|++|.+++.|.+ .+.+++++|
T Consensus 81 ~nl~a~~~~~~--~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~---~~~~~~~~i 155 (402)
T PRK07338 81 PALHVSVRPEA--PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFER---SPLADKLGY 155 (402)
T ss_pred CeEEEEECCCC--CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHh---cCCCCCCCE
Confidence 69999997643 246999999998752 789999999999999998854 355677899
Q ss_pred EEEEecccCCCCcchHHHHHHhh
Q 009366 393 IFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 393 ~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
.|++..+||.|..|+..++++..
T Consensus 156 ~~~~~~dEE~g~~g~~~~~~~~~ 178 (402)
T PRK07338 156 DVLINPDEEIGSPASAPLLAELA 178 (402)
T ss_pred EEEEECCcccCChhhHHHHHHHh
Confidence 99999999999999999988754
No 72
>PRK08201 hypothetical protein; Provisional
Probab=97.75 E-value=0.00014 Score=78.76 Aligned_cols=80 Identities=23% Similarity=0.173 Sum_probs=66.1
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
.||++++.|.. +.+.|++.+|+|.++ .|+.|+..|+|++|++++.|.+. +.++
T Consensus 67 ~~l~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~---~~~~ 142 (456)
T PRK08201 67 PIVYADWLHAP-GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKV---EGTL 142 (456)
T ss_pred CEEEEEecCCC-CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHh---cCCC
Confidence 58999987642 357899999999843 18999999999999999988543 2246
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhh
Q 009366 389 RRTIIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 389 ~rti~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
+++|.|++..+||.|..|+..|++++.
T Consensus 143 ~~~i~~~~~~dEE~g~~g~~~~l~~~~ 169 (456)
T PRK08201 143 PVNVKFCIEGEEEIGSPNLDSFVEEEK 169 (456)
T ss_pred CCCEEEEEEcccccCCccHHHHHHhhH
Confidence 779999999999999999999998754
No 73
>PRK07079 hypothetical protein; Provisional
Probab=97.75 E-value=0.00017 Score=78.44 Aligned_cols=82 Identities=17% Similarity=0.017 Sum_probs=67.8
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC-----------C-------------CCCCChhHHHHHHHHHHHHHHHHHcCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------Y-------------GAIDPNSGTAALLDIARRYALLMRLGW 386 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~-----------~-------------Ga~D~~sG~a~lle~ar~l~~~~~~g~ 386 (536)
-.||++.+.|.. +.+.|++.+|+|.++ + |+.|+.+|+|++|.+++.|.+. .+.
T Consensus 72 ~~~vva~~~~~~-~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~--~~~ 148 (469)
T PRK07079 72 GPFLIAERIEDD-ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAA--RGG 148 (469)
T ss_pred CCEEEEEeCCCC-CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHh--cCC
Confidence 369999996642 357899999999542 1 8999999999999999887532 245
Q ss_pred CCCceEEEEEecccCCCCcchHHHHHHhh
Q 009366 387 SPRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 387 ~p~rti~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
+++++|.|++..+||.|..|+.++++++.
T Consensus 149 ~~~~~i~~~~~~dEE~g~~G~~~l~~~~~ 177 (469)
T PRK07079 149 RLGFNVKLLIEMGEEIGSPGLAEVCRQHR 177 (469)
T ss_pred CCCCCEEEEEECccccCCccHHHHHHHhH
Confidence 78899999999999999999999998764
No 74
>PRK06446 hypothetical protein; Provisional
Probab=97.74 E-value=0.00014 Score=78.52 Aligned_cols=79 Identities=22% Similarity=0.159 Sum_probs=65.2
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (536)
-.||++++++. +.+.|++.+|+|.++ .|+.|+.+|+|++|.+++.|.+ .+ +
T Consensus 50 ~~~lia~~~~~--~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~---~~-~ 123 (436)
T PRK06446 50 HPVVYGEINVG--AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLID---KH-K 123 (436)
T ss_pred CCEEEEEecCC--CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHH---cC-C
Confidence 47999999642 246899999999854 1899999999999999887643 22 5
Q ss_pred CCceEEEEEecccCCCCcchHHHHHHhh
Q 009366 388 PRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 388 p~rti~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
++.+|.|++...||.|..|+.+|++++.
T Consensus 124 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 124 LNVNVKFLYEGEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred CCCCEEEEEEcccccCCHhHHHHHHHHH
Confidence 6789999999999999999999998754
No 75
>PRK07522 acetylornithine deacetylase; Provisional
Probab=97.73 E-value=0.00014 Score=76.76 Aligned_cols=77 Identities=25% Similarity=0.242 Sum_probs=64.4
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
..||+++++|. +.+.|++.+|+|.++ .|+.|+-.|+|++|.+++.|.+. ++
T Consensus 52 ~~nv~a~~~~~--~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 124 (385)
T PRK07522 52 KANLFATIGPA--DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA-----PL 124 (385)
T ss_pred cccEEEEeCCC--CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC-----CC
Confidence 47999999664 246899999999653 18999999999999999988653 35
Q ss_pred CceEEEEEecccCCCCcchHHHHHHh
Q 009366 389 RRTIIFCSWDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 389 ~rti~f~~~~~eE~g~~GS~~~~~~~ 414 (536)
+++|.|++..+||.|..|+..++++.
T Consensus 125 ~~~i~~~~~~dEE~g~~G~~~l~~~~ 150 (385)
T PRK07522 125 RRPLHLAFSYDEEVGCLGVPSMIARL 150 (385)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHh
Confidence 77999999999999889999998764
No 76
>PRK05469 peptidase T; Provisional
Probab=97.67 E-value=0.00018 Score=76.78 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=64.0
Q ss_pred eeeEEEEEcCCC-CCCcEEEEeeccCCcCC------------------------------------------------CC
Q 009366 331 IHNVFAVIRGLE-EPNRYVLLGNHRDAWTY------------------------------------------------GA 361 (536)
Q Consensus 331 ~~Nvi~~i~G~~-~~~~~vii~aH~Ds~~~------------------------------------------------Ga 361 (536)
..||+|.++|+. ++.+.|++.+|+|.++. |+
T Consensus 55 ~~~v~~~~~g~~~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~ 134 (408)
T PRK05469 55 NGYVMATLPANVDKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGT 134 (408)
T ss_pred CeEEEEEecCCCCCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCC
Confidence 358999999863 34589999999999832 44
Q ss_pred ----CCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHH
Q 009366 362 ----IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 362 ----~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
.|+.+|+|++|.+++.|.+. +..++.+|+|++-.+||.| .|+..++.+
T Consensus 135 ~~lg~D~Kgglaa~l~a~~~l~~~---~~~~~g~v~~~f~~dEE~g-~Ga~~~~~~ 186 (408)
T PRK05469 135 TLLGADDKAGIAEIMTALEYLIAH---PEIKHGDIRVAFTPDEEIG-RGADKFDVE 186 (408)
T ss_pred EeecccchHHHHHHHHHHHHHHhC---CCCCCCCEEEEEecccccC-CCHHHhhhh
Confidence 89999999999999988543 3356789999999999998 899887643
No 77
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=97.63 E-value=0.00019 Score=78.10 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCCcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCce
Q 009366 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (536)
Q Consensus 333 Nvi~~i~G~~~~~~~vii~aH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rt 391 (536)
|+++.+.+.. +++.|++.+|+|.++ .|+.|+..|++++|.+++.|+ +.+.+++++
T Consensus 67 ~~~~~~~~~~-~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~---~~~~~~~~~ 142 (466)
T TIGR01886 67 NYAGHVEYGA-GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILK---ELGLPPSKK 142 (466)
T ss_pred CCceeEEecC-CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHH---HhCCCCCCC
Confidence 4555544432 357999999999863 289999999999999988774 446678899
Q ss_pred EEEEEecccCCCCcchHHHHHHhh
Q 009366 392 IIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 392 i~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
|+|++...||.|..|+.+|+++..
T Consensus 143 i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 143 IRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred EEEEEECccccCcccHHHHHhcCc
Confidence 999999999999999999998754
No 78
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.63 E-value=0.00024 Score=74.74 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=62.5
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (536)
..|+++++ |. +.+.|++.+|+|+++. |+.|+.+|++++|.+++.|.+ .+.+
T Consensus 47 ~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 120 (375)
T PRK13009 47 VKNLWARR-GT--EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVA---AHPD 120 (375)
T ss_pred CcEEEEEe-cC--CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHH---hcCC
Confidence 46999988 64 3578999999998652 677999999999999887754 3556
Q ss_pred CCceEEEEEecccCCC-CcchHHHHHH
Q 009366 388 PRRTIIFCSWDAEEFG-MIGSTEWVEE 413 (536)
Q Consensus 388 p~rti~f~~~~~eE~g-~~GS~~~~~~ 413 (536)
++++|+|++..+||.+ ..|+..+++.
T Consensus 121 ~~~~i~~~~~~~EE~~~~~G~~~~~~~ 147 (375)
T PRK13009 121 HKGSIAFLITSDEEGPAINGTVKVLEW 147 (375)
T ss_pred CCceEEEEEEeecccccccCHHHHHHH
Confidence 8899999999999975 4699887764
No 79
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00027 Score=75.49 Aligned_cols=83 Identities=27% Similarity=0.232 Sum_probs=70.8
Q ss_pred eeeeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCC
Q 009366 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGW 386 (536)
Q Consensus 330 ~~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~ 386 (536)
...|+++++.|... ++.|++++|+|.++. |+.|+-.++++++.+++.|... |.
T Consensus 61 ~~~n~~~~~~~~~~-~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~---~~ 136 (409)
T COG0624 61 GRPNLVARLGGGDG-GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAA---GG 136 (409)
T ss_pred CceEEEEEecCCCC-CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHh---CC
Confidence 35699999988753 489999999998752 8999999999999999888653 45
Q ss_pred CCCceEEEEEecccCCCCcchHHHHHHhhh
Q 009366 387 SPRRTIIFCSWDAEEFGMIGSTEWVEENLV 416 (536)
Q Consensus 387 ~p~rti~f~~~~~eE~g~~GS~~~~~~~~~ 416 (536)
.++++|+|++...||.|..|...|+++...
T Consensus 137 ~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~ 166 (409)
T COG0624 137 ELPGDVRLLFTADEESGGAGGKAYLEEGEE 166 (409)
T ss_pred CCCeEEEEEEEeccccCCcchHHHHHhcch
Confidence 688999999999999999999999998754
No 80
>PRK07318 dipeptidase PepV; Reviewed
Probab=97.60 E-value=0.00022 Score=77.56 Aligned_cols=78 Identities=21% Similarity=0.105 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCCCcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCce
Q 009366 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (536)
Q Consensus 333 Nvi~~i~G~~~~~~~vii~aH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rt 391 (536)
|+++.+++.. ..+.|++.+|+|.++ .|+.|+.+|+|+++.+++.|.+ .|++++++
T Consensus 68 n~~~~~~~~~-~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~---~g~~~~~~ 143 (466)
T PRK07318 68 NYAGHIEYGE-GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKE---LGLPLSKK 143 (466)
T ss_pred CccceEEECC-CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHH---cCCCCCcc
Confidence 7777775322 346899999999774 1899999999999999887754 46778889
Q ss_pred EEEEEecccCCCCcchHHHHHHh
Q 009366 392 IIFCSWDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 392 i~f~~~~~eE~g~~GS~~~~~~~ 414 (536)
|.|++..+||.|..|+.++++.+
T Consensus 144 i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 144 VRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred EEEEEEcccccCchhHHHHHHhC
Confidence 99999999999999999999875
No 81
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.57 E-value=0.00022 Score=75.30 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=62.0
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (536)
.||+|++ |.. .+.|++.+|+|.++ .|+.|+-+++|++|++++.|.+. .++
T Consensus 61 ~nvia~~-g~~--~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~~ 132 (383)
T PRK05111 61 FNLLASL-GSG--EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT-----KLK 132 (383)
T ss_pred ceEEEEe-CCC--CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc-----CCC
Confidence 6999999 543 24699999999764 18999999999999999988642 345
Q ss_pred ceEEEEEecccCCCCcchHHHHHHh
Q 009366 390 RTIIFCSWDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 390 rti~f~~~~~eE~g~~GS~~~~~~~ 414 (536)
.+|+|++..+||.|..|+..++++.
T Consensus 133 ~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 133 KPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred CCeEEEEEeccccCcccHHHHHhcC
Confidence 7899999999999989999998764
No 82
>PRK08554 peptidase; Reviewed
Probab=97.57 E-value=0.0004 Score=75.00 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=66.6
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (536)
.|+++.+ |. .++.|++.+|+|.++ .|+.|+.+|+|++|.+++.|.+. .++
T Consensus 53 ~~l~~~~-~~--~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~-----~~~ 124 (438)
T PRK08554 53 YAVYGEI-GE--GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE-----PLN 124 (438)
T ss_pred eEEEEEe-CC--CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc-----CCC
Confidence 7999997 43 246899999999754 28999999999999999988542 356
Q ss_pred ceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeec
Q 009366 390 RTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDC 430 (536)
Q Consensus 390 rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~ 430 (536)
++|+|++.++||.|..++..+++...... .+..+.|+.|.
T Consensus 125 ~~i~l~~~~dEE~g~~~~~~~~~~~~~~~-~~~~~~iv~Ep 164 (438)
T PRK08554 125 GKVIFAFTGDEEIGGAMAMHIAEKLREEG-KLPKYMINADG 164 (438)
T ss_pred CCEEEEEEcccccCccccHHHHHHHHhcC-CCCCEEEEeCC
Confidence 78999999999998877776666543221 12234456654
No 83
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=97.53 E-value=0.00025 Score=74.10 Aligned_cols=74 Identities=24% Similarity=0.168 Sum_probs=62.2
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC--------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEe
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~--------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~ 397 (536)
.|++|++.|. .+.|++.+|+|.++ .|+.|+.+|+|++|++++.| . .+++++|.|++.
T Consensus 49 ~n~i~~~~~~---~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~-----~~~~~~i~~~~~ 119 (348)
T PRK04443 49 GNARGPAGDG---PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E-----ALVRARVSFVGA 119 (348)
T ss_pred CcEEEEcCCC---CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c-----ccCCCCEEEEEE
Confidence 5899998432 36899999999985 28999999999999999988 2 257889999999
Q ss_pred cccCCCCcchHHHHHHh
Q 009366 398 DAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 398 ~~eE~g~~GS~~~~~~~ 414 (536)
.+||.|..|...++.+.
T Consensus 120 ~dEE~g~~~~~~~l~~~ 136 (348)
T PRK04443 120 VEEEAPSSGGARLVADR 136 (348)
T ss_pred cccccCChhHHHHHHhc
Confidence 99999988888887753
No 84
>PRK07205 hypothetical protein; Provisional
Probab=97.51 E-value=0.00041 Score=75.02 Aligned_cols=75 Identities=20% Similarity=0.108 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCC
Q 009366 333 NVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (536)
Q Consensus 333 Nvi~~i~G~~~~~~~vii~aH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (536)
++++++ |. ..+.|++.+|+|.++ .|+.|+..|+|++|.+.+.|. +.+.+++
T Consensus 66 ~~~~~~-g~--~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~---~~~~~~~ 139 (444)
T PRK07205 66 YGYAEI-GQ--GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALL---DAGVQFN 139 (444)
T ss_pred EEEEEe-cC--CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHH---HcCCCCC
Confidence 566665 54 246899999999864 189999999999999988775 4467788
Q ss_pred ceEEEEEecccCCCCcchHHHHHH
Q 009366 390 RTIIFCSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 390 rti~f~~~~~eE~g~~GS~~~~~~ 413 (536)
++|+|++.+.||.|..|+..|++.
T Consensus 140 ~~i~l~~~~dEE~g~~g~~~~~~~ 163 (444)
T PRK07205 140 KRIRFIFGTDEETLWRCMNRYNEV 163 (444)
T ss_pred CcEEEEEECCcccCcccHHHHHhC
Confidence 999999999999999999999874
No 85
>PRK08652 acetylornithine deacetylase; Provisional
Probab=97.44 E-value=0.00035 Score=72.59 Aligned_cols=73 Identities=22% Similarity=0.188 Sum_probs=60.3
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcC--------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCS 396 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~--------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~ 396 (536)
..|+++ |. .+.|++.+|+|.++ .|+.|+.+|+|++|.+++.|.+. .++.+|.|++
T Consensus 47 ~~~~~~---~~---~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~-----~~~~~v~~~~ 115 (347)
T PRK08652 47 VINIVV---NS---KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE-----FEDLNVGIAF 115 (347)
T ss_pred eeEEEc---CC---CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc-----ccCCCEEEEE
Confidence 456666 32 46899999999875 38999999999999999988643 3467999999
Q ss_pred ecccCCCCcchHHHHHHh
Q 009366 397 WDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 397 ~~~eE~g~~GS~~~~~~~ 414 (536)
..+||.|..|+..+++++
T Consensus 116 ~~dEE~g~~G~~~~~~~~ 133 (347)
T PRK08652 116 VSDEEEGGRGSALFAERY 133 (347)
T ss_pred ecCcccCChhHHHHHHhc
Confidence 999999888999988764
No 86
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.42 E-value=0.00069 Score=70.63 Aligned_cols=75 Identities=28% Similarity=0.321 Sum_probs=60.4
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC----------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFC 395 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~----------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~ 395 (536)
.|+++++.+.. ...|++.+|+|+++ .|+.|+.+|+|++|.+++.|. +++++|.|+
T Consensus 50 ~~~~~~~~~~~--~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~-------~~~~~i~~~ 120 (352)
T PRK13007 50 NSVVARTDLGR--PSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA-------EPAHDLTLV 120 (352)
T ss_pred CeEEEEccCCC--CCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh-------ccCCCeEEE
Confidence 58999995332 23699999999865 389999999999999999882 367899999
Q ss_pred EecccCCCC--cchHHHHHHhh
Q 009366 396 SWDAEEFGM--IGSTEWVEENL 415 (536)
Q Consensus 396 ~~~~eE~g~--~GS~~~~~~~~ 415 (536)
+.++||.|. .|+..++.++.
T Consensus 121 ~~~~EE~~~~~~G~~~~~~~~~ 142 (352)
T PRK13007 121 FYDCEEVEAEANGLGRLAREHP 142 (352)
T ss_pred EEecccccCCcccHHHHHHhcc
Confidence 999999864 58888776543
No 87
>PRK06156 hypothetical protein; Provisional
Probab=97.41 E-value=0.00088 Score=73.97 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=62.9
Q ss_pred eeEE--EEEcCCCCCCcEEEEeeccCCcC--------------C-------------CCCCChhHHHHHHHHHHHHHHHH
Q 009366 332 HNVF--AVIRGLEEPNRYVLLGNHRDAWT--------------Y-------------GAIDPNSGTAALLDIARRYALLM 382 (536)
Q Consensus 332 ~Nvi--~~i~G~~~~~~~vii~aH~Ds~~--------------~-------------Ga~D~~sG~a~lle~ar~l~~~~ 382 (536)
.|++ +.++|.. .+.|++.+|+|.++ + |+.|+..|++++|.+++.|.+
T Consensus 96 ~~~v~~~~~~g~~--~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~-- 171 (520)
T PRK06156 96 DNRVLEIGLGGSG--SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKD-- 171 (520)
T ss_pred CCeEEEEEecCCC--CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHH--
Confidence 3544 6777743 46899999999763 1 788999999999999887754
Q ss_pred HcCCCCCceEEEEEecccCCCCcchHHHHHHh
Q 009366 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 383 ~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~ 414 (536)
.+.+++++|.|++..+||.|..|+.+|++++
T Consensus 172 -~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~ 202 (520)
T PRK06156 172 -SGLPLARRIELLVYTTEETDGDPLKYYLERY 202 (520)
T ss_pred -cCCCCCceEEEEEecccccCchhHHHHHHhc
Confidence 4557789999999999999999999999865
No 88
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=97.40 E-value=0.0012 Score=68.89 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=81.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccccC------
Q 009366 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG------ 434 (536)
Q Consensus 361 a~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~~g------ 434 (536)
|.||-.|+++|+|++|.+++. ++..++.|++..-||.|+.|++.-+..... . ..|.+|+...+
T Consensus 176 alDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~i~p----D--~aI~vDv~~~~d~~~~~ 244 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTKFNP----D--IFFAVDCSPAGDIYGDQ 244 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhhCCC----C--EEEEEecCCcCCCCCCC
Confidence 568999999999999988643 477899999999999999999854333222 2 45677765332
Q ss_pred -------CCc-----ccccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchH--HHHhcCCCeE
Q 009366 435 -------PGF-----FAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFA--SFVQHAGVPS 500 (536)
Q Consensus 435 -------~~~-----~~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~--~F~~~~GIPs 500 (536)
..+ ....+|.+.+.+.+++++..-|. +. ....+++|-. -|.. .|||+
T Consensus 245 ~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~-------Q~-----------~~~~gGtDa~~~~~~~-~Gvpt 305 (350)
T TIGR03107 245 GGKLGEGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKY-------QY-----------YVAKGGTDAGAAHLKN-SGVPS 305 (350)
T ss_pred ccccCCCceEEEecCCCCCCHHHHHHHHHHHHHcCCCc-------EE-----------ecCCCCchHHHHHHhC-CCCcE
Confidence 222 12234567777777777643321 11 0012466666 4544 59999
Q ss_pred EEeeeCCCCCCCCCcccc
Q 009366 501 VDMYYGKDFPVYHTALDT 518 (536)
Q Consensus 501 ~~~~~~~~~p~YHT~~Dt 518 (536)
+.++-. ..+-||+...
T Consensus 306 ~~i~ip--~Ry~Hs~~e~ 321 (350)
T TIGR03107 306 TTIGVC--ARYIHSHQTL 321 (350)
T ss_pred EEEccC--cccccChhhe
Confidence 999864 3444887544
No 89
>PRK13004 peptidase; Reviewed
Probab=97.39 E-value=0.00068 Score=72.19 Aligned_cols=76 Identities=22% Similarity=0.195 Sum_probs=61.3
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
.|+++.+.|. .+.|++.+|+|.++. |+.|+.+|++++|.+++.|.+ .+.++
T Consensus 59 ~n~~a~~~~~---~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~~~~~ 132 (399)
T PRK13004 59 GNVLGYIGHG---KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKD---LGLDD 132 (399)
T ss_pred CeEEEEECCC---CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHh---cCCCC
Confidence 5899999764 268999999997753 677889999999999998855 35568
Q ss_pred CceEEEEEecccCC-CCcchHHHHHH
Q 009366 389 RRTIIFCSWDAEEF-GMIGSTEWVEE 413 (536)
Q Consensus 389 ~rti~f~~~~~eE~-g~~GS~~~~~~ 413 (536)
+++|.|++..+||. +-.|+..++++
T Consensus 133 ~~~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 133 EYTLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred CCeEEEEEEcccccCcchhHHHHHHh
Confidence 89999999999995 44677777765
No 90
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=97.34 E-value=0.00096 Score=72.26 Aligned_cols=66 Identities=24% Similarity=0.244 Sum_probs=57.1
Q ss_pred CcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCC
Q 009366 345 NRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG 403 (536)
Q Consensus 345 ~~~vii~aH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g 403 (536)
.+.|++.+|+|.++ .|+.|+..|++++|.+++.|.+ .+.+|+++|.|++..+||.|
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g 143 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKE---LGLKLKKKIRFIFGTDEETG 143 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCCCcEEEEEECCcccC
Confidence 46899999999764 1899999999999999887754 46678899999999999999
Q ss_pred CcchHHHHHH
Q 009366 404 MIGSTEWVEE 413 (536)
Q Consensus 404 ~~GS~~~~~~ 413 (536)
..|+.+|+++
T Consensus 144 ~~g~~~~l~~ 153 (447)
T TIGR01887 144 WACIDYYFEH 153 (447)
T ss_pred cHhHHHHHHh
Confidence 9999999875
No 91
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.34 E-value=0.00059 Score=72.36 Aligned_cols=76 Identities=32% Similarity=0.279 Sum_probs=61.4
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
..||++.. |.. ++.|++.+|+|+++. |+.|+..|++++|++++.|.+. +
T Consensus 63 ~~~~~~~~-~~~--~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~---~--- 133 (394)
T PRK08651 63 RPNLIARR-GSG--NPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPA---G--- 133 (394)
T ss_pred cceEEEEe-CCC--CceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhc---C---
Confidence 46888875 432 378999999996541 6789999999999999987542 2
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhh
Q 009366 389 RRTIIFCSWDAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 389 ~rti~f~~~~~eE~g~~GS~~~~~~~~ 415 (536)
+++|+|++..+||.|..|+.+++++..
T Consensus 134 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 134 DGNIELAIVPDEETGGTGTGYLVEEGK 160 (394)
T ss_pred CCCEEEEEecCccccchhHHHHHhccC
Confidence 689999999999998899999998653
No 92
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=97.30 E-value=0.0011 Score=69.96 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCCCcEEEEeeccCCcC---------------------------------CCCCCChhHHHHHHHHHHHHH
Q 009366 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------------------YGAIDPNSGTAALLDIARRYA 379 (536)
Q Consensus 333 Nvi~~i~G~~~~~~~vii~aH~Ds~~---------------------------------~Ga~D~~sG~a~lle~ar~l~ 379 (536)
||++++.+. +.+.|++.+|+|.++ .|+.|+.+|+|++|.+++.|.
T Consensus 42 nvva~~~~~--~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~ 119 (373)
T TIGR01900 42 NVLARTDFG--KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLD 119 (373)
T ss_pred EEEEecCCC--CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHh
Confidence 999998543 246799999999752 178899999999999999885
Q ss_pred HHHHcCCCCCceEEEEEecccCCCC--cchHHHHHHhh
Q 009366 380 LLMRLGWSPRRTIIFCSWDAEEFGM--IGSTEWVEENL 415 (536)
Q Consensus 380 ~~~~~g~~p~rti~f~~~~~eE~g~--~GS~~~~~~~~ 415 (536)
+. +.+..++.+|.|++..+||.|. .|+..+++++.
T Consensus 120 ~~-~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~ 156 (373)
T TIGR01900 120 GR-APETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHP 156 (373)
T ss_pred hh-ccccCCCCCEEEEEEecccccCCCCCHHHHHHhCc
Confidence 42 2234578899999999999863 59988887643
No 93
>PRK09961 exoaminopeptidase; Provisional
Probab=97.27 E-value=0.0015 Score=68.17 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccccC-----
Q 009366 360 GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG----- 434 (536)
Q Consensus 360 Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~~g----- 434 (536)
-+.||-.|+++++|++|.+++. ++..+|.|+++.-||.|+.|++.-..... .. ..|.+|+...+
T Consensus 163 kalDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i~----pd--~~I~vDv~~~~d~~~~ 231 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAVS----PD--VAIVLDTACWAKNFDY 231 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhccC----CC--EEEEEeccCCCCCCCC
Confidence 3679999999999999988542 46789999999999999999986544322 12 35677865332
Q ss_pred -----------CCc-----ccccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHHh-cCC
Q 009366 435 -----------PGF-----FAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAG 497 (536)
Q Consensus 435 -----------~~~-----~~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~~G 497 (536)
..+ ....+|.+.+.+.+++++..-|.. ......++||-..|.. ..|
T Consensus 232 ~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~ggGTDa~~~~~~~~G 294 (344)
T PRK09961 232 GAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQ-----------------ADMFSNGGTDGGAVHLTGTG 294 (344)
T ss_pred CCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcE-----------------EEecCCCcchHHHHHHhCCC
Confidence 111 122345666677777765432210 0001135799988754 259
Q ss_pred CeEEEeeeCCCCCCCCCccc
Q 009366 498 VPSVDMYYGKDFPVYHTALD 517 (536)
Q Consensus 498 IPs~~~~~~~~~p~YHT~~D 517 (536)
||++.++.+.. +-||+..
T Consensus 295 iptv~ig~p~r--y~Hs~~E 312 (344)
T PRK09961 295 VPTVVMGPATR--HGHCAAS 312 (344)
T ss_pred CCEEEechhhh--cccChhh
Confidence 99999986522 3388654
No 94
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=97.17 E-value=0.0017 Score=68.21 Aligned_cols=76 Identities=24% Similarity=0.233 Sum_probs=59.5
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
.|++++. |. ..+.|++.+|+|.++. |+.|+-.|++++|..++.+.+ .+.++
T Consensus 45 ~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~---~~~~~ 118 (370)
T TIGR01246 45 KNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVK---KNPDH 118 (370)
T ss_pred ceEEEEe-cC--CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHH---hcCCC
Confidence 5999986 43 3578999999998642 677999999999999876644 34456
Q ss_pred CceEEEEEecccCCCC-cchHHHHHH
Q 009366 389 RRTIIFCSWDAEEFGM-IGSTEWVEE 413 (536)
Q Consensus 389 ~rti~f~~~~~eE~g~-~GS~~~~~~ 413 (536)
+.+|+|++..+||.+. .|+..+++.
T Consensus 119 ~~~v~~~~~~dEE~~~~~G~~~~~~~ 144 (370)
T TIGR01246 119 KGSISLLITSDEEGTAIDGTKKVVET 144 (370)
T ss_pred CCcEEEEEEeccccCCCcCHHHHHHH
Confidence 7899999999999764 699887654
No 95
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=97.10 E-value=0.0017 Score=67.32 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=60.6
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC--------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEe
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~--------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~ 397 (536)
.|+++.. |. ..+.|++.+|+|.++ .|+.|+.+|+|++|++.+.|.+. ..+|.|++.
T Consensus 40 ~~~~~~~-~~--~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~-------~~~i~~~~~ 109 (336)
T TIGR01902 40 GNFILGK-GD--GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK-------GIKVIVSGL 109 (336)
T ss_pred CcEEEEe-CC--CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC-------CCcEEEEEE
Confidence 4788765 33 246899999999974 28999999999999999988532 358999999
Q ss_pred cccCCCCcchHHHHHHhh
Q 009366 398 DAEEFGMIGSTEWVEENL 415 (536)
Q Consensus 398 ~~eE~g~~GS~~~~~~~~ 415 (536)
.+||.|..|+.++++++.
T Consensus 110 ~dEE~g~~G~~~~~~~~~ 127 (336)
T TIGR01902 110 VDEESSSKGAREVIDKNY 127 (336)
T ss_pred eCcccCCccHHHHHhhcC
Confidence 999999999999988743
No 96
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=97.07 E-value=0.0035 Score=65.82 Aligned_cols=78 Identities=29% Similarity=0.229 Sum_probs=58.1
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCCCC----------------CCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTYGA----------------IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFC 395 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~Ga----------------~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~ 395 (536)
.||+++++|.. +.+.|++.+|+|.++.+. .+-.+++|++|.+++.|.+.. .+++++|.|+
T Consensus 44 ~~vva~~~~~~-~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~~~~~a~~l~a~~~l~~~~---~~~~~~i~~~ 119 (363)
T TIGR01891 44 TGVVATIGGGK-PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGHDLHTAILLGTAKLLKKLA---DLLEGTVRLI 119 (363)
T ss_pred cEEEEEEeCCC-CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcCHHHHHHHHHHHHHHHhch---hhCCceEEEE
Confidence 79999997753 347899999999986210 011257888888888776542 3577899999
Q ss_pred EecccCCCCcchHHHHHHh
Q 009366 396 SWDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 396 ~~~~eE~g~~GS~~~~~~~ 414 (536)
+..+||.+ .|+..++++.
T Consensus 120 ~~~dEE~~-~G~~~~~~~~ 137 (363)
T TIGR01891 120 FQPAEEGG-GGATKMIEDG 137 (363)
T ss_pred EeecCcCc-chHHHHHHCC
Confidence 99999986 7998887653
No 97
>PRK09864 putative peptidase; Provisional
Probab=97.01 E-value=0.005 Score=64.36 Aligned_cols=126 Identities=20% Similarity=0.212 Sum_probs=80.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccccC------
Q 009366 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG------ 434 (536)
Q Consensus 361 a~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~~g------ 434 (536)
|.||-.|+++|+|++|.+++ +..++.|++..-||.|+.|++.-+..... .+ .|.+|+...+
T Consensus 173 alDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i~P----Di--aIavDvt~~~d~p~~~ 239 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHIKP----DV--VIVLDTAVAGDVPGID 239 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcCCC----CE--EEEEecccCCCCCCCc
Confidence 56899999999999998742 67899999999999999999865444332 23 4677764321
Q ss_pred -----------CCc-----ccccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHHh-cCC
Q 009366 435 -----------PGF-----FAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAG 497 (536)
Q Consensus 435 -----------~~~-----~~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~~G 497 (536)
..+ ....+|.+.+.+.+++++..-|. + + .....+++|-..+.. ..|
T Consensus 240 ~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~-------Q-~---------~~~~~ggTDa~~i~~~~~G 302 (356)
T PRK09864 240 NIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPL-------Q-F---------STMKTGATDGGRYNVMGGG 302 (356)
T ss_pred ccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCc-------e-E---------EEcCCCCchHHHHHHhCCC
Confidence 111 12345667777777777643321 1 0 001124667666533 369
Q ss_pred CeEEEeeeCCCCCCCCCcccc
Q 009366 498 VPSVDMYYGKDFPVYHTALDT 518 (536)
Q Consensus 498 IPs~~~~~~~~~p~YHT~~Dt 518 (536)
||++.++-.- .|-||+...
T Consensus 303 vpt~~isiP~--RY~Hs~~e~ 321 (356)
T PRK09864 303 RPVVALCLPT--RYLHANSGM 321 (356)
T ss_pred CcEEEEeecc--CcCCCcceE
Confidence 9999998642 233887653
No 98
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0033 Score=65.31 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=83.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccccCCCc---
Q 009366 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGF--- 437 (536)
Q Consensus 361 a~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~~--- 437 (536)
|.||-.|+++|||++|.|. +-.+..++.|++..-||.|+.|+.-...+... ...|.+|....+...
T Consensus 178 alDdR~gva~lle~lk~l~-----~~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~p------d~aiavd~~~~~d~~~~~ 246 (355)
T COG1363 178 ALDDRAGVAALLELLKELK-----GIELPADVYFVASVQEEVGLRGAKTSAFRIKP------DIAIAVDVTPAGDTPGVP 246 (355)
T ss_pred eccchHhHHHHHHHHHHhc-----cCCCCceEEEEEecchhhccchhhccccccCC------CEEEEEecccccCCCCCc
Confidence 5699999999999999883 12688999999999999999999866554322 234677776655221
Q ss_pred ------------cc-----ccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHHhc-CCCe
Q 009366 438 ------------FA-----GATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQH-AGVP 499 (536)
Q Consensus 438 ------------~~-----~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~~-~GIP 499 (536)
.+ ..+|.|.+.+.+++++-.-|. + +....+++||...+... .|||
T Consensus 247 ~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~-------Q----------~~v~~~ggTDA~a~~~~g~gvp 309 (355)
T COG1363 247 KGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPY-------Q----------VDVSPGGGTDAGAAHLTGGGVP 309 (355)
T ss_pred ccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCe-------E----------EEecCCCCccHHHHHHcCCCCc
Confidence 01 124667777777777643221 1 01111478999887652 3699
Q ss_pred EEEeeeCCCCCCCCCcc
Q 009366 500 SVDMYYGKDFPVYHTAL 516 (536)
Q Consensus 500 s~~~~~~~~~p~YHT~~ 516 (536)
+..++..-.| -|+++
T Consensus 310 ta~Igip~ry--~Hs~~ 324 (355)
T COG1363 310 TALIGIPTRY--IHSPV 324 (355)
T ss_pred eEEEeccccc--ccCcc
Confidence 9999875322 37743
No 99
>PLN02693 IAA-amino acid hydrolase
Probab=96.94 E-value=0.0035 Score=67.70 Aligned_cols=78 Identities=26% Similarity=0.281 Sum_probs=60.9
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC-------------C---CCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-------------G---AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIF 394 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-------------G---a~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f 394 (536)
..||+|++. .. +.+.|++.+|+|+++. | +.|--+++|++|.+++.|++.. ...+.+|+|
T Consensus 90 ~~~via~~g-~~-~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~---~~~~g~V~~ 164 (437)
T PLN02693 90 ITGIIGYIG-TG-EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHR---HHLQGTVVL 164 (437)
T ss_pred CcEEEEEEC-CC-CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCc---ccCCceEEE
Confidence 479999994 32 3578999999999863 1 5566678999999999987642 234678999
Q ss_pred EEecccCCCCcchHHHHHHh
Q 009366 395 CSWDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 395 ~~~~~eE~g~~GS~~~~~~~ 414 (536)
++..+|| +..|+..++++.
T Consensus 165 if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 165 IFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred EEEEccc-chhhHHHHHHCC
Confidence 9999999 557999888763
No 100
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=96.90 E-value=0.0019 Score=67.37 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=52.4
Q ss_pred EEEEeeccCCcC--------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHH
Q 009366 347 YVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVE 412 (536)
Q Consensus 347 ~vii~aH~Ds~~--------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~ 412 (536)
.|++.+|+|+++ .|+.|+..|+|++|.+++.|.+ .+ .+|.|++..+||.|..|++++++
T Consensus 62 ~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~---~~----~~i~~~~~~dEE~g~~G~~~l~~ 134 (346)
T PRK00466 62 DILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNE---KG----IKVMVSGLADEESTSIGAKELVS 134 (346)
T ss_pred eEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cC----CCEEEEEEcCcccCCccHHHHHh
Confidence 599999999986 3999999999999999988744 23 35899999999999899999988
Q ss_pred Hh
Q 009366 413 EN 414 (536)
Q Consensus 413 ~~ 414 (536)
+.
T Consensus 135 ~~ 136 (346)
T PRK00466 135 KG 136 (346)
T ss_pred cC
Confidence 64
No 101
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=96.90 E-value=0.0058 Score=66.86 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=64.9
Q ss_pred eeeEEEEEcCCC--CCCcEEEEeeccCCcCC--------------------------CC---CCChhHHHHHHHHHHHHH
Q 009366 331 IHNVFAVIRGLE--EPNRYVLLGNHRDAWTY--------------------------GA---IDPNSGTAALLDIARRYA 379 (536)
Q Consensus 331 ~~Nvi~~i~G~~--~~~~~vii~aH~Ds~~~--------------------------Ga---~D~~sG~a~lle~ar~l~ 379 (536)
..|+++.+++.. +..+.|++.+|+|.++. |+ .|++.|+|++|.+++
T Consensus 52 ~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~--- 128 (485)
T PRK15026 52 VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA--- 128 (485)
T ss_pred cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH---
Confidence 369999987531 23568999999997741 55 499999999887642
Q ss_pred HHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeecc
Q 009366 380 LLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCA 431 (536)
Q Consensus 380 ~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~ 431 (536)
+.+. +...|.|++...||.|+.|++++.... .+..+.||+|..
T Consensus 129 ---~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~~~-----~~~~~~i~~e~~ 171 (485)
T PRK15026 129 ---DENV-VHGPLEVLLTMTEEAGMDGAFGLQSNW-----LQADILINTDSE 171 (485)
T ss_pred ---hCCC-CCCCEEEEEEcccccCcHhHHHhhhcc-----CCcCEEEEeCCC
Confidence 2232 467899999999999999999875421 244566788775
No 102
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=96.87 E-value=0.004 Score=65.10 Aligned_cols=98 Identities=28% Similarity=0.318 Sum_probs=76.9
Q ss_pred eeeeEEEEEcCCCCCCcEEEEeeccCCcC--------------------------------------------CCCCCCh
Q 009366 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWT--------------------------------------------YGAIDPN 365 (536)
Q Consensus 330 ~~~Nvi~~i~G~~~~~~~vii~aH~Ds~~--------------------------------------------~Ga~D~~ 365 (536)
.-.||+|-|+|. .+.+.||+.+|+|.+. .|+.|..
T Consensus 64 gR~nv~AlVrg~-~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMK 142 (553)
T COG4187 64 GRRNVFALVRGG-TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMK 142 (553)
T ss_pred ccceeEEEEecC-CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhh
Confidence 447999999994 4789999999999764 1899999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhh---hcccCcEEEEEEeeccc
Q 009366 366 SGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL---VNLGAKAVAYLNVDCAV 432 (536)
Q Consensus 366 sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~---~~~~~~~~a~inlD~~~ 432 (536)
||.|+-|.+...|+.-. ..+-+|.|+....||....|.++-+...+ +...-...+.||+|.++
T Consensus 143 sGlav~la~L~~fa~~~----~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~ 208 (553)
T COG4187 143 SGLAVHLACLEEFAART----DRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTS 208 (553)
T ss_pred hhhHHHHHHHHHHhhCC----CCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEecccccc
Confidence 99999998877776421 34569999999999998888877655533 33334578899999864
No 103
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=96.67 E-value=0.0072 Score=64.25 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=58.2
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
.||++.+ |.. .+.|++.+|+|.++ .|+.|+-.|++++|.+++.|.+ .++.+
T Consensus 57 ~~v~~~~-g~~--~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~~~~~ 130 (395)
T TIGR03526 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CcEEEEe-CCC--CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHH---cCCCC
Confidence 5899998 542 36899999999754 2889999999999999998754 45567
Q ss_pred CceEEEEEecccCC-CCcchHHHHHH
Q 009366 389 RRTIIFCSWDAEEF-GMIGSTEWVEE 413 (536)
Q Consensus 389 ~rti~f~~~~~eE~-g~~GS~~~~~~ 413 (536)
++++.|++..+||. +-.|+..++++
T Consensus 131 ~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 131 DYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CceEEEEEecccccCCcHhHHHHHhc
Confidence 78999988888983 33466666654
No 104
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.50 E-value=0.0072 Score=63.74 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=65.2
Q ss_pred ceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecceecCCCC
Q 009366 166 YGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGD 245 (536)
Q Consensus 166 ~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v~~~~Gd 245 (536)
.+.+-+.+...+-|=.. -....++||++++.+|++. +..|++.||++||.|+|++++..|... . .-|+
T Consensus 72 ~a~~~~~a~~~pld~cs--~~~~kl~~~~~~v~RGnC~-Ft~Ka~~Aq~aGAsaLliin~~~d~~~-~--------~~~~ 139 (541)
T KOG2442|consen 72 AADIPHLAQVDPLDSCS--TLQSKLSGKVALVFRGNCS-FTEKAKLAQAAGASALLIINNKKDLLF-M--------PCGN 139 (541)
T ss_pred ccccchhhhcCCccccC--CCCccccceeEEEecccce-eehhhhhhhhcCceEEEEEcCchhhcc-C--------CCCC
Confidence 34444555555433110 0134689999999999998 999999999999999999998755320 0 0111
Q ss_pred CCCCCCCCCCCCcccCcccccccCCCCCCceeecCHHHHHHHHHHcCC
Q 009366 246 PLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (536)
Q Consensus 246 p~tPg~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (536)
+. . ...-+||++-|++.+++.|.+...+
T Consensus 140 ~~-------------~-------~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 140 KE-------------T-------SLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CC-------------c-------cccccceEEEEEhhhHHHHHhhhcc
Confidence 11 1 1224799999999999999976643
No 105
>PRK08737 acetylornithine deacetylase; Provisional
Probab=96.50 E-value=0.0086 Score=63.09 Aligned_cols=69 Identities=25% Similarity=0.230 Sum_probs=55.6
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCC---------------------CCCCChhHHHHHHHHHHHHHHHHHcCCCCC
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY---------------------GAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~---------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (536)
..|+++. +|. +.|++.+|+|+++. |+.|..+|+|++|.+++. +.
T Consensus 54 ~~nli~~-~g~----~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~----------~~ 118 (364)
T PRK08737 54 AVSLYAV-RGT----PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA----------GD 118 (364)
T ss_pred ceEEEEE-cCC----CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc----------cC
Confidence 4689986 453 36999999998641 899999999999998763 34
Q ss_pred ceEEEEEecccCCCC-cchHHHHHHh
Q 009366 390 RTIIFCSWDAEEFGM-IGSTEWVEEN 414 (536)
Q Consensus 390 rti~f~~~~~eE~g~-~GS~~~~~~~ 414 (536)
.+|.|++..+||.|. .|+..+++..
T Consensus 119 ~~v~~~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 119 GDAAFLFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred CCEEEEEEcccccCchhhHHHHHHhC
Confidence 689999999999887 6888888763
No 106
>PLN02280 IAA-amino acid hydrolase
Probab=96.41 E-value=0.016 Score=63.38 Aligned_cols=77 Identities=22% Similarity=0.201 Sum_probs=58.9
Q ss_pred eeeEEEEEcCCCCCCcEEEEeeccCCcCCC----------------CCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 009366 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTYG----------------AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIF 394 (536)
Q Consensus 331 ~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~G----------------a~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f 394 (536)
..||+|++ |.. +++.|++.+|+|.++.+ +.+--.++|++|.+++.|++. +.+++.+|+|
T Consensus 140 ~~~vva~~-g~~-~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~---~~~~~g~V~~ 214 (478)
T PLN02280 140 KTGIRAWI-GTG-GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSR---EHLLKGTVVL 214 (478)
T ss_pred CCEEEEEE-CCC-CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhc---cccCCceEEE
Confidence 46999999 643 24789999999988732 122234899999999988653 2246779999
Q ss_pred EEecccCCCCcchHHHHHH
Q 009366 395 CSWDAEEFGMIGSTEWVEE 413 (536)
Q Consensus 395 ~~~~~eE~g~~GS~~~~~~ 413 (536)
++-.+||.|. |+.+++++
T Consensus 215 if~pdEE~g~-Ga~~li~~ 232 (478)
T PLN02280 215 LFQPAEEAGN-GAKRMIGD 232 (478)
T ss_pred Eecccccccc-hHHHHHHC
Confidence 9999999974 99998876
No 107
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=96.37 E-value=0.014 Score=62.13 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=57.1
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCC
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (536)
.|++|.+ |.. .+.|++.+|+|.++ .|+.|+..|+|++|.+++.|.+ .|..+
T Consensus 57 ~n~~~~~-g~~--~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~---~g~~~ 130 (395)
T TIGR03320 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CCEEEEe-CCC--CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHH---cCCCC
Confidence 5899998 532 36899999999753 2899999999999999998754 45567
Q ss_pred CceEEEEEecccCCC-CcchHHHHHH
Q 009366 389 RRTIIFCSWDAEEFG-MIGSTEWVEE 413 (536)
Q Consensus 389 ~rti~f~~~~~eE~g-~~GS~~~~~~ 413 (536)
+.+|.|++..+||.+ -.|+..++++
T Consensus 131 ~~~i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 131 DYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CceEEEEecccccccCchHHHHHHHh
Confidence 789999988888863 2344455543
No 108
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=96.31 E-value=0.026 Score=58.93 Aligned_cols=126 Identities=20% Similarity=0.152 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEEEEEEeeccc---------
Q 009366 362 IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAV--------- 432 (536)
Q Consensus 362 ~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~a~inlD~~~--------- 432 (536)
.||-+|+++++++++.|.+ .+++++++|.|++...||.| .|+..-+ ...+..+|.+|+..
T Consensus 182 ~D~K~G~a~~l~~~~~l~~---~~~~~~~~v~~~~t~qEEvG-~gaa~~i-------~pd~a~~i~vd~~~~~p~~~~lg 250 (343)
T TIGR03106 182 LDDKAGVAALLAALKAIVE---HKVPLPVDVHPLFTITEEVG-SGASHAL-------PPDVAELVSVDNGTVAPGQNSSE 250 (343)
T ss_pred cccHHhHHHHHHHHHHHHh---cCCCCCceEEEEEECCcccC-ccchhcc-------cHhhhccEEEEecccCCCCCcCC
Confidence 6999999999999998854 35678899999999999999 5632111 12222345666432
Q ss_pred cCCCccc-----ccChhHHHHHHHHHhhcCCCCCCCCcceecccCCCCccccccCCCCCCchHHHHh-cCCCeEEEeeeC
Q 009366 433 QGPGFFA-----GATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAGVPSVDMYYG 506 (536)
Q Consensus 433 ~g~~~~~-----~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~~GIPs~~~~~~ 506 (536)
.|..+.. ..+|.+.+.+.+++++..-|. + + .....+++|-..+.. ..|||++.++..
T Consensus 251 ~Gp~i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~-------Q-~---------~~~~~~gtDa~~~~~~~~Gi~t~~i~iP 313 (343)
T TIGR03106 251 HGVTIAMADSSGPFDYHLTRKLIRLCQDHGIPH-------R-R---------DVFRYYRSDAASAVEAGHDIRTALVTFG 313 (343)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCc-------E-E---------EecCCCCChHHHHHHcCCCCCEEEeecc
Confidence 1222211 234677777888887644332 1 0 001134777776544 359999999864
Q ss_pred CCCCCCCCcccc
Q 009366 507 KDFPVYHTALDT 518 (536)
Q Consensus 507 ~~~p~YHT~~Dt 518 (536)
-.| -|| +..
T Consensus 314 ~Ry--~Hs-~e~ 322 (343)
T TIGR03106 314 LDA--SHG-YER 322 (343)
T ss_pred ccc--hhh-hhh
Confidence 222 277 543
No 109
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=95.79 E-value=0.03 Score=58.21 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=64.8
Q ss_pred EEcCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 009366 337 VIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTII 393 (536)
Q Consensus 337 ~i~G~~~~~~~vii~aH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~ 393 (536)
-..|+++..+.|++..|+|..+ .|+.|+-.-++..+++.++++++ |...+.+|+
T Consensus 83 ~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~---g~~lpvnv~ 159 (473)
T KOG2276|consen 83 GVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQL---GIDLPVNVV 159 (473)
T ss_pred hcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHh---CccccceEE
Confidence 3348888789999999999554 28999999999999999988765 556789999
Q ss_pred EEEecccCCCCcchHHHHHHhhhc
Q 009366 394 FCSWDAEEFGMIGSTEWVEENLVN 417 (536)
Q Consensus 394 f~~~~~eE~g~~GS~~~~~~~~~~ 417 (536)
||+=+-||.|..|=.+.++.....
T Consensus 160 f~~EgmEEsgS~~L~~l~~~~kD~ 183 (473)
T KOG2276|consen 160 FVFEGMEESGSEGLDELIEKEKDK 183 (473)
T ss_pred EEEEechhccCccHHHHHHHHhhh
Confidence 999999999999988887765543
No 110
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=95.62 E-value=0.037 Score=57.50 Aligned_cols=45 Identities=11% Similarity=0.408 Sum_probs=38.9
Q ss_pred HHHHHHHhhc--CCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEE
Q 009366 71 VSSYLRDLTH--HPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKA 115 (536)
Q Consensus 71 i~~~L~~ls~--~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~~v 115 (536)
..++++.++. .+|.+||+++.++++||+++|+++|++++.++|..
T Consensus 33 a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~ 79 (346)
T PRK10199 33 ANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNS 79 (346)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccc
Confidence 4567777777 49999999999999999999999999998777664
No 111
>PRK02256 putative aminopeptidase 1; Provisional
Probab=95.40 E-value=0.07 Score=57.74 Aligned_cols=56 Identities=21% Similarity=0.161 Sum_probs=42.3
Q ss_pred EEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHH
Q 009366 347 YVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409 (536)
Q Consensus 347 ~vii~aH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~ 409 (536)
.-++|.+.+=....+.||-.|+.+++|+.+.+. .+..++++++|+-||.|+.|++-
T Consensus 244 ~~~~G~~~efI~s~rLDNr~~~~~~leal~~~~-------~~~~~~~~~~~dqEEVGs~ga~g 299 (462)
T PRK02256 244 ARDVGLDRSLIGAYGQDDRVCAYTSLEALLELE-------NPEKTAVVLLVDKEEIGSEGNTG 299 (462)
T ss_pred cceeccccceeeccccccHHHHHHHHHHHHhcc-------cCCCeEEEEEEcccccCCcchhh
Confidence 334455555445578999999999999987542 35678999999999999877653
No 112
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=94.35 E-value=0.16 Score=55.12 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=80.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchHHHHHHhhhcccCcEE----------------
Q 009366 360 GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAV---------------- 423 (536)
Q Consensus 360 Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~~~~~~~~~~~~~~~~---------------- 423 (536)
.+.||-.|+.++|++.+.+.... +-.+....++++|+-||.|+.|++--.........+++.
T Consensus 248 ~rlDnr~~~~~~l~al~~~~~~~--~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~ 325 (465)
T PTZ00371 248 PRLDNLGSSFCAFKALTEAVESL--GENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAK 325 (465)
T ss_pred ecchhHHHHHHHHHHHHhccccc--cCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHH
Confidence 46799999999999987543210 001445555566999999988766433322222111111
Q ss_pred -----EEEEeecccc-------------------CCCcc------cccChhHHHHHHHHHhhcCCCCCCCCcceecccCC
Q 009366 424 -----AYLNVDCAVQ-------------------GPGFF------AGATPQLDDILIEVTKMVKDPESESGTLYDQWSAP 473 (536)
Q Consensus 424 -----a~inlD~~~~-------------------g~~~~------~~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~ 473 (536)
..|.+|++-. |..+. ...++.+..++.+++++..-| ++.+..+
T Consensus 326 ~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip-------~Q~~~~~ 398 (465)
T PTZ00371 326 LMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIP-------IQEFVVK 398 (465)
T ss_pred HHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCC-------EEEEEec
Confidence 4578887533 11111 123445666667766654322 2222221
Q ss_pred CCccccccCCCCCCchHHHHh-cCCCeEEEeeeCCCCCCCCCccccH
Q 009366 474 NRIFNIQRLGGVDSDFASFVQ-HAGVPSVDMYYGKDFPVYHTALDTY 519 (536)
Q Consensus 474 ~~~~~~~~~~~~~sD~~~F~~-~~GIPs~~~~~~~~~p~YHT~~Dt~ 519 (536)
....+|||-.|++. ..|||+++++-.-.+ =||+..+.
T Consensus 399 -------~d~~~GsTig~i~~s~~Gi~tvDiGiP~l~--MHS~rE~~ 436 (465)
T PTZ00371 399 -------NDSPCGSTIGPILSSNLGIRTVDIGIPQLA--MHSIREMC 436 (465)
T ss_pred -------CCCCCcchHHHHHHhCCCCcEEEechhhcc--cccHHHHc
Confidence 11246899999987 679999999753111 28876653
No 113
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=94.01 E-value=0.29 Score=53.76 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=71.0
Q ss_pred eeeeEEEEEcCCC-CCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCcchH
Q 009366 330 TIHNVFAVIRGLE-EPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGST 408 (536)
Q Consensus 330 ~~~Nvi~~i~G~~-~~~~~vii~aH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~GS~ 408 (536)
+..||+|.++..+ ..-|.+|+.+.++.... .-|..|++.+|.++|.|++. .-| -++|+|++.+. +..|.+
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~~--~~n~~~v~l~lal~~~~~~~--~~w--sKDii~l~~~~---~~~g~~ 72 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSDG--EYNAGGVALALALARYFRRQ--SYW--SKDIIFLFTDD---ELAGMQ 72 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCCc--ccchhhHHHHHHHHHHhhhc--hhh--hccEEEEecCC---cchHHH
Confidence 3579999997532 24589999999876542 44588999999999999753 234 68999998764 358999
Q ss_pred HHHHHhhhc---------c---cCcEEEEEEeeccccC
Q 009366 409 EWVEENLVN---------L---GAKAVAYLNVDCAVQG 434 (536)
Q Consensus 409 ~~~~~~~~~---------~---~~~~~a~inlD~~~~g 434 (536)
.|++++... + .-.+.+.||+|..+..
T Consensus 73 awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~ 110 (504)
T PF04114_consen 73 AWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDS 110 (504)
T ss_pred HHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCC
Confidence 999997543 1 1257888999987654
No 114
>PRK02813 putative aminopeptidase 2; Provisional
Probab=93.52 E-value=0.57 Score=50.46 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=80.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCc---chHH-HHHH---------------hhhccc
Q 009366 359 YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI---GSTE-WVEE---------------NLVNLG 419 (536)
Q Consensus 359 ~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~---GS~~-~~~~---------------~~~~~~ 419 (536)
..+.||-.|+.++|++.+.+. +..++++++|+-||.|+. |+.- |+++ +...+
T Consensus 230 s~~lDnr~~~~~~l~al~~~~--------~~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i- 300 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAA--------SDATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRAL- 300 (428)
T ss_pred EecchhHHHHHHHHHHHHhcC--------CCCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhh-
Confidence 356799999999999976542 267999999999999988 7662 2211 11112
Q ss_pred CcEEEEEEeeccccC-------------------CCccc------ccChhHHHHHHHHHhhcCCCCCCCCcceecccCCC
Q 009366 420 AKAVAYLNVDCAVQG-------------------PGFFA------GATPQLDDILIEVTKMVKDPESESGTLYDQWSAPN 474 (536)
Q Consensus 420 ~~~~a~inlD~~~~g-------------------~~~~~------~~~p~l~~~~~~~~~~v~~p~~~~~~l~~~~~~~~ 474 (536)
++ -..|.+|++-.. ..+.. ..++.+..++.+++++..-| ++.+...
T Consensus 301 ~~-s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip-------~Q~~v~~- 371 (428)
T PRK02813 301 AR-SFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVP-------YQEFVNR- 371 (428)
T ss_pred CC-CeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCC-------EEEEEec-
Confidence 12 234778875321 11111 12345556666666654322 2222211
Q ss_pred CccccccCCCCCCchHHHHh-cCCCeEEEeeeCCCCCCCCCccccHH
Q 009366 475 RIFNIQRLGGVDSDFASFVQ-HAGVPSVDMYYGKDFPVYHTALDTYT 520 (536)
Q Consensus 475 ~~~~~~~~~~~~sD~~~F~~-~~GIPs~~~~~~~~~p~YHT~~Dt~d 520 (536)
....+|||-.|++. +.|||+++++-.- -+=||+..+..
T Consensus 372 ------~d~~gGstig~i~~s~~Gi~tvdiGiP~--l~MHS~~E~~~ 410 (428)
T PRK02813 372 ------SDMPCGSTIGPITAARLGIRTVDVGAPM--LAMHSARELAG 410 (428)
T ss_pred ------CCCCCccHHHHHHHhCCCCcEEEeChhh--cccccHHHHcc
Confidence 11246899999987 5799999998531 12288866543
No 115
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=92.27 E-value=0.17 Score=45.90 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=40.4
Q ss_pred eeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEe
Q 009366 167 GKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (536)
Q Consensus 167 g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~ 223 (536)
-+||-+. -++.-+.|.+ ++++.|.|+|+.+|+|. +-.|..+++++||.++||-
T Consensus 66 ~~lV~ad--Pp~aC~elrN-~~f~~d~vaL~eRGeCS-Fl~Ktl~~e~aGa~aiiit 118 (193)
T KOG3920|consen 66 LELVLAD--PPHACEELRN-EIFAPDSVALMERGECS-FLVKTLNGEKAGATAIIIT 118 (193)
T ss_pred cceeecC--ChhHHHHHhh-cccCCCcEEEEecCCce-eeehhhhhhhcCceEEEEe
Confidence 3666653 1222344433 78999999999999998 9999999999999987764
No 116
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.3 Score=50.48 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=53.4
Q ss_pred CCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEeecCCccCCCcceecceecCCCCCCCCCCCCCCCCcccCccccc
Q 009366 187 GVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSE 266 (536)
Q Consensus 187 gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~d~~d~~~~~v~rg~v~~~~Gdp~tPg~~s~~~~~r~~~~~~~ 266 (536)
.-.-...+||+++|++. +.+|+.+||++|++|+|+|+++.+.. -+ .+.+ .
T Consensus 75 ~~~~~~~laLI~Rg~Cs-Fe~Kv~~AQ~aGfkaaIVynn~~~~~--lv-------------~~~~-----------~--- 124 (348)
T KOG4628|consen 75 STRSTSFLALIRRGGCS-FEDKVLNAQRAGFKAAIVYNNVGSED--LV-------------AMAS-----------N--- 124 (348)
T ss_pred CCCCcceEEEEEccCCc-hHHHHhhcccccCceEEEecCCCCch--he-------------eecc-----------C---
Confidence 34566789999999997 89999999999999999998764311 11 1110 0
Q ss_pred ccCCCCCCceeecCHHHHHHHHHHc
Q 009366 267 VSKRFPKIPSLPLSFENAQIILGSL 291 (536)
Q Consensus 267 ~~~~~p~IP~~~Is~~~a~~Ll~~l 291 (536)
.....|+++-|+..-++.|.+..
T Consensus 125 --~~~v~i~~~~vs~~~ge~l~~~~ 147 (348)
T KOG4628|consen 125 --PSKVDIHIVFVSVFSGELLSSYA 147 (348)
T ss_pred --CccceeEEEEEeeehHHHHHHhh
Confidence 01236889999999999888754
No 117
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=90.31 E-value=1.5 Score=46.64 Aligned_cols=78 Identities=28% Similarity=0.271 Sum_probs=61.3
Q ss_pred eeEEEEEcCCCCCCcEEEEeeccCCcCC-------------C---CCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 009366 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-------------G---AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFC 395 (536)
Q Consensus 332 ~Nvi~~i~G~~~~~~~vii~aH~Ds~~~-------------G---a~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~ 395 (536)
.=|+|+++|.. +.+.|-+-|-+|..+. | |+=--.-++++|-+|+.|+++++ ..+-+|+|+
T Consensus 57 TGvva~~~~g~-~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~---~~~Gtv~~i 132 (392)
T COG1473 57 TGVVATLKGGK-PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKD---NLPGTVRLI 132 (392)
T ss_pred eEEEEEEcCCC-CCCEEEEEeecccCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhh---hCCcEEEEE
Confidence 56899998764 4569999999998772 3 22122348999999999998763 578899999
Q ss_pred EecccCCCCcchHHHHHHh
Q 009366 396 SWDAEEFGMIGSTEWVEEN 414 (536)
Q Consensus 396 ~~~~eE~g~~GS~~~~~~~ 414 (536)
+-.|||.+- |+..++++-
T Consensus 133 fQPAEE~~~-Ga~~mi~~G 150 (392)
T COG1473 133 FQPAEEGGG-GAKAMIEDG 150 (392)
T ss_pred ecccccccc-cHHHHHhcC
Confidence 999999876 999988874
No 118
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=4 Score=40.96 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=44.8
Q ss_pred HHHhcccChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEE
Q 009366 60 KTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKA 115 (536)
Q Consensus 60 ~~~l~~~~~~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~~v 115 (536)
+.+-...+..+++++|.-+- .+|..||+|..+..+||.+.|++.|+.++.+.|.-
T Consensus 42 r~i~~~s~~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~ 96 (338)
T KOG3946|consen 42 RAINPDSDWNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTD 96 (338)
T ss_pred HHhcCCCCHHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccc
Confidence 45555667778888865553 58999999999999999999999999998777654
No 119
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=79.72 E-value=3 Score=44.48 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=37.8
Q ss_pred cChHHHHHHHHHhhcCC--------CCCCChhhHHHHHHHHHHHHHCCCceeee
Q 009366 66 SSNYTVSSYLRDLTHHP--------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 66 ~~~~~i~~~L~~ls~~~--------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
++.+++.++|+.|.+.+ |.++|.++.++++||.+.|+++|++++.+
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~ 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 34567888888888743 67788889999999999999999998653
No 120
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=75.68 E-value=5.1 Score=42.76 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhhcCC-------CCCCChhhHHHHHHHHHHHHHCCCceeee
Q 009366 68 NYTVSSYLRDLTHHP-------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 68 ~~~i~~~L~~ls~~~-------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
.+++++++..|+..+ |.+.|+++.++++||.+.|+++|++++.+
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 58 (414)
T PRK12890 8 GERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD 58 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 467888999999744 55789999999999999999999998654
No 121
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=75.40 E-value=4.7 Score=43.01 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=39.2
Q ss_pred cChHHHHHHHHHhhcC-C-------CCCCChhhHHHHHHHHHHHHHCCCceeee
Q 009366 66 SSNYTVSSYLRDLTHH-P-------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 66 ~~~~~i~~~L~~ls~~-~-------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
++.+++.++|+.|.+. + |.+.|.++.++++||.+.|+++|++++.+
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~ 57 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD 57 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 5677888999999875 3 66888889999999999999999998654
No 122
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=75.23 E-value=6.6 Score=45.23 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=35.4
Q ss_pred ccChHHHHHHHHHhhc-CCCCCCChhhH-HHHHHHHHHHHHC
Q 009366 65 LSSNYTVSSYLRDLTH-HPHLAGTEPSL-DTVRYVQSHFEQL 104 (536)
Q Consensus 65 ~~~~~~i~~~L~~ls~-~~r~aGt~g~~-~~a~~i~~~~~~~ 104 (536)
..+.++++.+|.++++ +||..||..++ .+.+||.++..+.
T Consensus 53 ~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i 94 (834)
T KOG2194|consen 53 QFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKI 94 (834)
T ss_pred hhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHH
Confidence 4568899999999998 69999999998 8999999998874
No 123
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=75.02 E-value=4.8 Score=43.01 Aligned_cols=44 Identities=9% Similarity=-0.008 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhc---C-----CCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 009366 69 YTVSSYLRDLTH---H-----PHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 69 ~~i~~~L~~ls~---~-----~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
.++++.|+.|++ . .|.+.|+++.++++||.+.|++.|++++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~~ 61 (414)
T PRK12891 10 ERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVDA 61 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 467777777776 2 4899999999999999999999999987653
No 124
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=73.42 E-value=50 Score=35.19 Aligned_cols=43 Identities=12% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeee
Q 009366 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
+.+.+.|+.|.+.|=.... .++.++++||.+.|+++|+++...
T Consensus 14 ~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~ 57 (427)
T PRK13013 14 DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELI 57 (427)
T ss_pred HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEE
Confidence 5677888888876544432 234699999999999999997544
No 125
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=71.18 E-value=4.8 Score=42.99 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcC--------CCCCCChhhHHHHHHHHHHHHHCCCceeeeeeE-EEEeecc
Q 009366 70 TVSSYLRDLTHH--------PHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYK-ALLSYPV 121 (536)
Q Consensus 70 ~i~~~L~~ls~~--------~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~~-v~~~~p~ 121 (536)
++++.|+.|+.. .|++-|+.+.++.+|+.+.++++||+++.+..- ++..+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~gN~~~~~~g 64 (406)
T TIGR03176 4 HFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDVGNLYGRLVG 64 (406)
T ss_pred HHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecC
Confidence 566777777751 589999999999999999999999999877764 3344443
No 126
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=69.16 E-value=9.4 Score=41.91 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=39.6
Q ss_pred ccChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeee
Q 009366 65 LSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEY 113 (536)
Q Consensus 65 ~~~~~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~ 113 (536)
.+....+.+.|+.|++.|+.+|. +.+.++||.+.+++.|++++.++.
T Consensus 6 ~~~~~~~~~~l~~Lv~ips~S~~--e~~~~~~l~~~~~~~G~~~~~d~~ 52 (485)
T PRK15026 6 QLSPQPLWDIFAKICSIPHPSYH--EEQLAEYIVGWAKEKGFHVERDQV 52 (485)
T ss_pred hcCHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHhCCCEEEEEec
Confidence 34577889999999999987765 459999999999999999876653
No 127
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.89 E-value=17 Score=40.16 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=57.9
Q ss_pred eeeeeeeEEEEEcCCC-CCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecccCCCCc
Q 009366 327 KVATIHNVFAVIRGLE-EPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI 405 (536)
Q Consensus 327 ~~~~~~Nvi~~i~G~~-~~~~~vii~aH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~rti~f~~~~~eE~g~~ 405 (536)
++....||+|.+++-+ ..-|-+|+...++.-..+ |-.|++.++.+++.++.-. -| .++|+|+++++ -..
T Consensus 116 e~y~G~NvyGilRAPRgdgtEsivl~vP~~~~~~~---~~~~v~l~lsla~~f~r~~--yW--sKDII~v~~d~---~~~ 185 (617)
T KOG3566|consen 116 EEYSGENVYGILRAPRGDGTESIVLVVPYGRSSGS---NSASVALLLSLADYFSRWV--YW--SKDIIFVFTDG---PAL 185 (617)
T ss_pred hhcCCceEEEEEecCCCCCcceEEEEEecccCCCc---chhHHHHHHHHHHHhcCCe--ee--cccEEEEEeCC---ccc
Confidence 3344789999998643 235888888888764322 3678899999988875321 13 58999999987 457
Q ss_pred chHHHHHHhhh
Q 009366 406 GSTEWVEENLV 416 (536)
Q Consensus 406 GS~~~~~~~~~ 416 (536)
|-..|++.+.+
T Consensus 186 g~~AwLeaYhd 196 (617)
T KOG3566|consen 186 GLDAWLEAYHD 196 (617)
T ss_pred cHHHHHHHhhc
Confidence 88899998765
No 128
>PRK07473 carboxypeptidase; Provisional
Probab=68.32 E-value=1.6e+02 Score=30.90 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhhcCCCCCCChhh-HHHHHHHHHHHHHCCCceeee
Q 009366 68 NYTVSSYLRDLTHHPHLAGTEPS-LDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 68 ~~~i~~~L~~ls~~~r~aGt~g~-~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
.+++.+.|+.|.+.+=.++.+.+ .+.++|+.+.|+++|++++..
T Consensus 10 ~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 54 (376)
T PRK07473 10 SEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERI 54 (376)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 45667778888876555555332 467889999999999998653
No 129
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=65.71 E-value=8.1 Score=43.53 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhcC-----------CCCCCChhhHHHHHHHHHHHHHCCCc-eeeeeeE-EEEeecc
Q 009366 68 NYTVSSYLRDLTHH-----------PHLAGTEPSLDTVRYVQSHFEQLKFN-THTVEYK-ALLSYPV 121 (536)
Q Consensus 68 ~~~i~~~L~~ls~~-----------~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~~~-v~~~~p~ 121 (536)
.+++++.|+.|+.. .|++-|+.+.++++|+.+.|+++||+ ++.+..- ++-.+|+
T Consensus 180 ~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~gNv~~~~~g 246 (591)
T PRK13799 180 GADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVGNVVGRYKA 246 (591)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCCCEEEEcCC
Confidence 36788888888873 27888999999999999999999998 9887753 4444443
No 130
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=63.54 E-value=9 Score=40.74 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=34.6
Q ss_pred HHHHHHHHhhc---C-----CCCCCChhhHHHHHHHHHHHHHCCCceeeeee
Q 009366 70 TVSSYLRDLTH---H-----PHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEY 113 (536)
Q Consensus 70 ~i~~~L~~ls~---~-----~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~ 113 (536)
++++.|+.+++ . .|++-|+++.++++||++.|+++|++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~~~ 53 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFDEV 53 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 35555666654 1 47888999999999999999999999876653
No 131
>PLN02693 IAA-amino acid hydrolase
Probab=59.06 E-value=37 Score=36.73 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=37.8
Q ss_pred HHHHHHHhcccCh----HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCcee
Q 009366 56 LHFQKTFLSLSSN----YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (536)
Q Consensus 56 ~~~~~~~l~~~~~----~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 109 (536)
.+|+..+++..+. +.+.+..++|-+.|-+++. +.++++||.+.|+++|+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~--E~~ta~~i~~~L~~~G~~~~ 85 (437)
T PLN02693 30 SQIQINLLELAKSPEVFDWMVRIRRKIHENPELGYE--EFETSKLIRSELDLIGIKYR 85 (437)
T ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHCCCeeE
Confidence 3455555543332 3466777777777888887 68999999999999999864
No 132
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=58.90 E-value=41 Score=35.80 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeeee
Q 009366 68 NYTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 68 ~~~i~~~L~~ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
.+++.+.|+.|.+.+-.++- ++..++++||.+.|+++|++++.++
T Consensus 36 ~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~ 81 (410)
T PRK06133 36 QPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAP 81 (410)
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 34677888888887766664 3446899999999999999986544
No 133
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=57.17 E-value=96 Score=33.73 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCCCC----------ChhhHHHHHHHHHHHHHCCCceee
Q 009366 69 YTVSSYLRDLTHHPHLAG----------TEPSLDTVRYVQSHFEQLKFNTHT 110 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aG----------t~g~~~~a~~i~~~~~~~Gl~~~~ 110 (536)
+.+.+.|+.|-+.|=.++ -++..++++|+.+.|+++|+++..
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~ 64 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKN 64 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEE
Confidence 356667777776432221 245677999999999999999754
No 134
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=56.38 E-value=20 Score=38.02 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHhhcC-------CCCCCChhhHHHHHHHHHHHHHCCCceeee
Q 009366 67 SNYTVSSYLRDLTHH-------PHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 67 ~~~~i~~~L~~ls~~-------~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
+.+++.+.|+.|++. .|.+-++++.++++||.+.|+++|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 59 (412)
T PRK12892 8 DGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID 59 (412)
T ss_pred cHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 455777888888873 245667888999999999999999998654
No 135
>PRK06915 acetylornithine deacetylase; Validated
Probab=54.27 E-value=23 Score=37.71 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=38.5
Q ss_pred HHHHHHhcccCh--HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeee
Q 009366 57 HFQKTFLSLSSN--YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 57 ~~~~~~l~~~~~--~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
++++.+++.++. +++.+.|+.|-+.|=.+| .+.++++||++.|+++|++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~--~e~~~~~~l~~~l~~~G~~~~~~ 57 (422)
T PRK06915 3 QLKKQICDYIESHEEEAVKLLKRLIQEKSVSG--DESGAQAIVIEKLRELGLDLDIW 57 (422)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhcCCeeEEe
Confidence 345556554443 557788888887765554 46899999999999999987543
No 136
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=53.37 E-value=20 Score=40.32 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhhcC-----------CCCCCChhhHHHHHHHHHHHHHCCC-ceeeeee
Q 009366 68 NYTVSSYLRDLTHH-----------PHLAGTEPSLDTVRYVQSHFEQLKF-NTHTVEY 113 (536)
Q Consensus 68 ~~~i~~~L~~ls~~-----------~r~aGt~g~~~~a~~i~~~~~~~Gl-~~~~~~~ 113 (536)
.+++++.|+.|+.. .|++-|+++.++++|+.+.|+++|+ +++.+..
T Consensus 180 ~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~ 237 (591)
T PRK13590 180 GNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAV 237 (591)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCC
Confidence 36788999999872 2567799999999999999999999 7877665
No 137
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=52.83 E-value=25 Score=38.29 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeee
Q 009366 68 NYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEY 113 (536)
Q Consensus 68 ~~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~ 113 (536)
.+++.+.|+.|.+.++. |..+.++++||.+.|+++|++++.++.
T Consensus 3 ~~~~~~~l~~l~~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~~~~ 46 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRP--SKNEKEVSNFIVNWAKKLGLEVKQDEV 46 (477)
T ss_pred HHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHHHHcCCeEEEeCC
Confidence 46788899999998866 455789999999999999999876553
No 138
>PRK08652 acetylornithine deacetylase; Provisional
Probab=47.84 E-value=32 Score=35.32 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 009366 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
+++.+.+++|-+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 2 ~~~~~~~~~lv~ips~s~~--e~~~~~~l~~~l~~~G~~v~~~~ 43 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQ--EDEIALHIMEFLESLGYDVHIES 43 (347)
T ss_pred hhHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCEEEEEe
Confidence 4567788888877766654 67899999999999999976543
No 139
>PRK07338 hypothetical protein; Provisional
Probab=45.53 E-value=43 Score=35.40 Aligned_cols=43 Identities=7% Similarity=-0.033 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeee
Q 009366 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
+++.+.|..|.+.+=.++. +|..+.++||.++|++.|++++..
T Consensus 17 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 60 (402)
T PRK07338 17 APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELI 60 (402)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 4566677777765533333 345689999999999999987643
No 140
>PRK05111 acetylornithine deacetylase; Provisional
Probab=44.56 E-value=42 Score=35.11 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCh-----hhHHHHHHHHHHHHHCCCceeeee
Q 009366 68 NYTVSSYLRDLTHHPHLAGTE-----PSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 68 ~~~i~~~L~~ls~~~r~aGt~-----g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
.+.+.+.|+.|-+.|-.++.+ ++.++++||.+.|+++|++++..+
T Consensus 4 ~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 53 (383)
T PRK05111 4 LPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQP 53 (383)
T ss_pred chHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEe
Confidence 456788888888877666653 236799999999999999876543
No 141
>PRK08596 acetylornithine deacetylase; Validated
Probab=41.93 E-value=48 Score=35.41 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHHHHHCCCceeeee
Q 009366 69 YTVSSYLRDLTHHPHLAGTE-PSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~-g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
+++.+.|+.|.+.|=.++.. ++.++++||++.|+++|++++.++
T Consensus 13 ~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~ 57 (421)
T PRK08596 13 DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWD 57 (421)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46778888888866555443 466889999999999999876544
No 142
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=40.79 E-value=58 Score=28.78 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=31.6
Q ss_pred ceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCcc-chHHHHHHHHcCCe-EEEEeecC
Q 009366 166 YGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLS-RSGVIFLAEAKGAI-GVLLYAEW 226 (536)
Q Consensus 166 ~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~~-~~~kv~~A~~~GA~-gvii~~d~ 226 (536)
+|.++..+ -+.. |.+++|||+++.+++-.. -+..+..+...|-+ +.|++.+.
T Consensus 27 tG~iid~~----H~l~-----G~si~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~~~~ 80 (123)
T cd01356 27 TGKVIDPH----HPLY-----GESIAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVFEEA 80 (123)
T ss_pred CCeEeeCC----CCcC-----CCcccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEeecCc
Confidence 67777643 2333 889999999999876431 12344455555543 55555544
No 143
>PRK09961 exoaminopeptidase; Provisional
Probab=40.13 E-value=23 Score=36.97 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=23.0
Q ss_pred eeeeeEEEEEcCCCCCCcEEEEeeccCCcCC
Q 009366 329 ATIHNVFAVIRGLEEPNRYVLLGNHRDAWTY 359 (536)
Q Consensus 329 ~~~~Nvi~~i~G~~~~~~~vii~aH~Ds~~~ 359 (536)
....||+|+++|.. .+.|++.||.|..+.
T Consensus 40 D~~Gnvi~~~~g~~--~~~v~l~aHmDevg~ 68 (344)
T PRK09961 40 DGLGSVLIRLNEST--GPKVMICAHMDEVGF 68 (344)
T ss_pred CCCCCEEEEEcCCC--CCEEEEEeccceece
Confidence 35689999998742 358999999998874
No 144
>PRK09133 hypothetical protein; Provisional
Probab=39.82 E-value=52 Score=35.76 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCcee
Q 009366 68 NYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (536)
Q Consensus 68 ~~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 109 (536)
.+.+.+.|+.|.+.+-.++..++.++++||.+.|+++|+++.
T Consensus 36 ~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~ 77 (472)
T PRK09133 36 QQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADA 77 (472)
T ss_pred HHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCce
Confidence 345666777777766555445678999999999999999863
No 145
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=39.01 E-value=61 Score=34.24 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 009366 68 NYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (536)
Q Consensus 68 ~~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (536)
.+++.+.|+.|-+.|=..+..++.++++||++.|+++|+++..
T Consensus 8 ~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~ 50 (400)
T TIGR01880 8 EDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKT 50 (400)
T ss_pred hHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeE
Confidence 3455567777777654444444578999999999999998753
No 146
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=37.75 E-value=75 Score=33.24 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEE
Q 009366 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKA 115 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~~v 115 (536)
+.+.+.|+.|+.-+=.+|. +.+.++|+.+.|+++|++++.+.+..
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~--E~~V~~~l~~~l~~~g~ev~~D~~Gn 47 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGF--TDAVVRYVAERLEDLGIEYELTRRGA 47 (343)
T ss_pred HHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHHcCCeEEECCCeE
Confidence 4577788999987756665 56999999999999999988776654
No 147
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=36.14 E-value=65 Score=33.84 Aligned_cols=45 Identities=22% Similarity=0.506 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeeeee
Q 009366 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTVEY 113 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~~~ 113 (536)
+++.+.|+.|.+.+=.++. .++.++++||+++|+++|++++..+.
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~ 51 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEV 51 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4566677777775533322 34568999999999999998765543
No 148
>PRK06837 acetylornithine deacetylase; Provisional
Probab=35.94 E-value=66 Score=34.40 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 009366 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (536)
+++.+.|+.|.+.|=.+ ..+.++++||++.|+++|++++.
T Consensus 20 ~~~~~~l~~li~ipS~s--~~e~~~~~~l~~~l~~~G~~~~~ 59 (427)
T PRK06837 20 DAQVAFTQDLVRFPSTR--GAEAPCQDFLARAFRERGYEVDR 59 (427)
T ss_pred HHHHHHHHHHhccCCCC--CcHHHHHHHHHHHHHHCCCceEE
Confidence 45666777777765444 45678999999999999998754
No 149
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=35.90 E-value=66 Score=33.30 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 009366 68 NYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 68 ~~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
.+++.+.|++|.+.|-.+| .+.++++||.+.|+++|++++.++
T Consensus 5 ~~~~~~~l~~Lv~i~s~s~--~e~~~~~~l~~~l~~~G~~~~~~~ 47 (348)
T PRK04443 5 ALEARELLKGLVEIPSPSG--EEAAAAEFLVEFMESHGREAWVDE 47 (348)
T ss_pred hHHHHHHHHHHHcCCCCCC--ChHHHHHHHHHHHHHcCCEEEEcC
Confidence 3567788888888765554 467999999999999999976543
No 150
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=35.75 E-value=28 Score=37.39 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=36.5
Q ss_pred cChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCcee
Q 009366 66 SSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (536)
Q Consensus 66 ~~~~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 109 (536)
+..+++.++..+|++.||.++- +.+.+.|+.++++..|+.+.
T Consensus 2 ~~~~~l~~~F~~~~kI~~~S~~--e~~~~p~~~~~~k~~~~~v~ 43 (414)
T COG2195 2 LKMERLLDRFLELVKIPTQSKH--EKAVAPSTVGQAKLLGLLVE 43 (414)
T ss_pred cchHHHHHHHHHHeeCCCCCCC--ccccccccHHHHHHcCchhh
Confidence 3567888888999999999876 78999999999999999875
No 151
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=35.61 E-value=73 Score=33.92 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCCCChhhHHHHHHHHHHHHHCCCc-eeeee-eE-EEEeecc
Q 009366 83 HLAGTEPSLDTVRYVQSHFEQLKFN-THTVE-YK-ALLSYPV 121 (536)
Q Consensus 83 r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~-~~-v~~~~p~ 121 (536)
....++++++.|+||+++|+++|++ ++.++ +- ++...|.
T Consensus 25 ~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~ 66 (410)
T TIGR01882 25 TCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPS 66 (410)
T ss_pred CCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecC
Confidence 4455677889999999999999997 87775 43 4444454
No 152
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=35.61 E-value=53 Score=34.04 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 009366 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 70 ~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
++.+.|++|.+.|=.+| .+.++++||.+.|+++|++++..+
T Consensus 1 ~~~~~~~~l~~i~s~s~--~e~~~~~~l~~~l~~~g~~~~~~~ 41 (361)
T TIGR01883 1 RLKKYFLELIQIDSESG--KEKAILTYLKKQITKLGIPVSLDE 41 (361)
T ss_pred ChHHHHHHHeecCCCCC--cHHHHHHHHHHHHHHcCCEEEEec
Confidence 35677888887665554 467999999999999999876543
No 153
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=35.58 E-value=69 Score=33.62 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCCC---hhhHHHHHHHHHHHHHCCCc-eeee
Q 009366 69 YTVSSYLRDLTHHPHLAGT---EPSLDTVRYVQSHFEQLKFN-THTV 111 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt---~g~~~~a~~i~~~~~~~Gl~-~~~~ 111 (536)
+++.+.|+.|.+.+=.+++ .++.++++||.+.|+++|++ ++..
T Consensus 5 ~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~ 51 (400)
T PRK13983 5 DEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERY 51 (400)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEE
Confidence 3566778888875444433 35789999999999999998 7543
No 154
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=35.37 E-value=55 Score=34.21 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=28.7
Q ss_pred HHHHHhhcCCCCC-CChhhHHHHHHHHHHHHHCCCceeee
Q 009366 73 SYLRDLTHHPHLA-GTEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 73 ~~L~~ls~~~r~a-Gt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
+.|+.|.+.+-.+ .+.++.++++||++.|+++|++++..
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~ 41 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVI 41 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEE
Confidence 3456666655432 35567899999999999999997654
No 155
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=35.12 E-value=83 Score=32.51 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 009366 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
+++.+.|+.|.+.+ +.|.++.++++||.+.|++.|+++..++
T Consensus 10 ~~~~~~l~~lv~i~--s~s~~e~~~~~~l~~~l~~~g~~~~~~~ 51 (346)
T PRK00466 10 QKAKELLLDLLSIY--TPSGNETNATKFFEKISNELNLKLEILP 51 (346)
T ss_pred HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 46777888888755 3445567999999999999999876554
No 156
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=34.70 E-value=70 Score=33.38 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 009366 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
+++.+.|+.|.+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~--e~~~~~~l~~~l~~~G~~~~~~~ 43 (377)
T PRK08588 2 EEKIQILADIVKINSVNDN--EIEVANYLQDLFAKHGIESKIVK 43 (377)
T ss_pred hHHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHHHCCCceEEEe
Confidence 4566778888877666654 67899999999999999976543
No 157
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=33.47 E-value=2.3e+02 Score=24.93 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=29.2
Q ss_pred CCcccCcEEEEEeCCCcc--chHHHHHHHHcCCeEEEEeecCCc
Q 009366 187 GVNVSGCVVMARKGSVLS--RSGVIFLAEAKGAIGVLLYAEWDR 228 (536)
Q Consensus 187 gidv~GkIvlv~~g~~~~--~~~kv~~A~~~GA~gvii~~d~~d 228 (536)
.+..--.|-++|..- .+ ...-+..|.+.||.||++...+.+
T Consensus 22 ~~~~p~~vriIrvpC-~Grv~~~~il~Af~~GADGV~V~gC~~g 64 (124)
T PF02662_consen 22 RLQYPPNVRIIRVPC-SGRVDPEFILRAFEKGADGVLVAGCHPG 64 (124)
T ss_pred cCCCCCCeEEEEccC-CCccCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 455666688887531 11 246688999999999999988743
No 158
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=32.74 E-value=71 Score=32.75 Aligned_cols=44 Identities=30% Similarity=0.283 Sum_probs=34.5
Q ss_pred hHHHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEe
Q 009366 179 DYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (536)
Q Consensus 179 D~~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~ 223 (536)
-++.|.+.=..|+|||-+.-.|++. +|.-+.-|...||+||.+=
T Consensus 264 tI~~L~Evv~aV~~ri~V~lDGGVR-~G~DVlKALALGAk~VfiG 307 (363)
T KOG0538|consen 264 TIEALPEVVKAVEGRIPVFLDGGVR-RGTDVLKALALGAKGVFIG 307 (363)
T ss_pred hHHHHHHHHHHhcCceEEEEecCcc-cchHHHHHHhcccceEEec
Confidence 3555544223589999999989887 8999999999999998864
No 159
>PRK07522 acetylornithine deacetylase; Provisional
Probab=31.94 E-value=80 Score=32.98 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 009366 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (536)
..+.+.|+.|.+.|-.+|-+ ..++++||.++|+++|++++.
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~-~~~~~~~l~~~l~~~G~~~~~ 44 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDS-NLALIEWVRDYLAAHGVESEL 44 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCc-cHHHHHHHHHHHHHcCCeEEE
Confidence 34667888888877666532 249999999999999998754
No 160
>PRK05469 peptidase T; Provisional
Probab=31.90 E-value=82 Score=33.39 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCCCCC--------hhhHHHHHHHHHHHHHCCCc-eeeeeeE
Q 009366 70 TVSSYLRDLTHHPHLAGT--------EPSLDTVRYVQSHFEQLKFN-THTVEYK 114 (536)
Q Consensus 70 ~i~~~L~~ls~~~r~aGt--------~g~~~~a~~i~~~~~~~Gl~-~~~~~~~ 114 (536)
.+.+.|++|.+.+=.++. ++..++++||++.|+++|++ +..++..
T Consensus 3 ~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~ 56 (408)
T PRK05469 3 KLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDENG 56 (408)
T ss_pred hHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECCCe
Confidence 345566666653322222 57899999999999999997 6555544
No 161
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=30.28 E-value=65 Score=33.55 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 009366 72 SSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (536)
Q Consensus 72 ~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (536)
.+.++.|.+.|..+|- +.++++||.+.|+++|+++..
T Consensus 2 ~~~~~~L~~ips~s~~--E~~~a~~l~~~l~~~g~~~~~ 38 (363)
T TIGR01891 2 TDIRRHLHEHPELSFE--EFKTSSLIAEALESLGIEVRR 38 (363)
T ss_pred hHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCceEe
Confidence 3578888888888875 689999999999999998753
No 162
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=29.79 E-value=1.5e+02 Score=27.04 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=42.7
Q ss_pred cccccCCCCCcceeEEEecCCChhhHHHHH-HcCCcccCcEEEEEeCCCcc---ch-HHHHHHHHcCCeEEEEeec
Q 009366 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALE-AAGVNVSGCVVMARKGSVLS---RS-GVIFLAEAKGAIGVLLYAE 225 (536)
Q Consensus 155 ~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~-~~gidv~GkIvlv~~g~~~~---~~-~kv~~A~~~GA~gvii~~d 225 (536)
.|..|++...+-|+.+=+... +|-..+. .....-.|+|+++..+.... .| .....|+.+|++|+|+-.-
T Consensus 18 ~~~~~g~~~~i~G~A~TV~~~--~d~~~~~~ai~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~ 91 (150)
T TIGR01935 18 MFRNFGGRAAFAGPIVTVKCF--EDNSLVREVLEQPGAGRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVNGC 91 (150)
T ss_pred hhhhcCCCCEEEEEEEEEEEE--CCcHHHHHHHhcCCCCeEEEEECCCCCceEeehHHHHHHHHHCCCEEEEEeec
Confidence 356788877787777666543 2211121 11234689999998654210 23 4566788999999887643
No 163
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=28.46 E-value=2.2e+02 Score=26.46 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=43.8
Q ss_pred cccccCCCCCcceeEEEecCCChhhHHHHHH-cCCcccCcEEEEEeCCCcc---ch-HHHHHHHHcCCeEEEEeecC
Q 009366 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVLS---RS-GVIFLAEAKGAIGVLLYAEW 226 (536)
Q Consensus 155 ~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~-~gidv~GkIvlv~~g~~~~---~~-~kv~~A~~~GA~gvii~~d~ 226 (536)
.|..|++.-.+-|+.+=+.... |-..+.+ ....-.|+|+++..+.... .| .....|..+|++|+|+..--
T Consensus 22 ~~~~~g~~~~~~G~A~TV~~~~--d~~~~~~aid~~~pGdVlVid~~g~~~~A~~G~~la~~a~~~G~aGvVidG~v 96 (161)
T TIGR02998 22 IFSNFGGRSSFGGKVVTVKCFE--HNGLINELLEQNGTGRVLVIDGGGSTRRALIDAELAQLAANNGWEGIVVYGAV 96 (161)
T ss_pred cccccCCCCEEEEEEEEEEeeC--CcHHHHHHHhccCCCeEEEEECCCCCceEeeCHHHHHHHHHCCCeEEEEeecc
Confidence 4778887777788877665443 2111211 1234579999988654210 23 45666889999999987543
No 164
>PRK06446 hypothetical protein; Provisional
Probab=26.15 E-value=1.3e+02 Score=32.39 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeeee
Q 009366 70 TVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 70 ~i~~~L~~ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
++.+.|+.|-+.+=.++. ++..++++||.+.|+++|++++..+
T Consensus 3 ~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~ 46 (436)
T PRK06446 3 EELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIER 46 (436)
T ss_pred hHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455667777765434432 2337999999999999999886543
No 165
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=24.59 E-value=1.2e+02 Score=31.23 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHC-CCceee
Q 009366 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQL-KFNTHT 110 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~-Gl~~~~ 110 (536)
+++.+.|+.|-+.|-.+|. +.+.++||.++|+++ |+++..
T Consensus 7 ~~~~~~l~~li~ips~s~~--e~~~~~~l~~~l~~~~~~~~~~ 47 (352)
T PRK13007 7 ADLAELTAALVDIPSVSGD--EKALADAVEAALRALPHLEVIR 47 (352)
T ss_pred HHHHHHHHHHhcCCCCCch--HHHHHHHHHHHHHhCcCceEEe
Confidence 4678889999988877765 578999999999995 887643
No 166
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=24.12 E-value=1.8e+02 Score=30.80 Aligned_cols=34 Identities=32% Similarity=0.185 Sum_probs=23.4
Q ss_pred ccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEee
Q 009366 190 VSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYA 224 (536)
Q Consensus 190 v~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~~ 224 (536)
+.++|-|+-.|++. ++..+..|...||.+|.+-.
T Consensus 280 v~~~i~vi~dGGIr-~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 280 VDKRVPIVFDSGVR-RGQHVFKALASGADLVALGR 313 (367)
T ss_pred hCCCCcEEeeCCcC-CHHHHHHHHHcCCCEEEEcH
Confidence 44566666667776 67777777778888877653
No 167
>PRK07906 hypothetical protein; Provisional
Probab=23.95 E-value=99 Score=32.97 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=21.5
Q ss_pred ChhhHHHHHHHHHHHHHCCCceeee
Q 009366 87 TEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 87 t~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
++++.++++||.++|+++|++++..
T Consensus 21 ~~~e~~~~~~l~~~l~~~G~~~~~~ 45 (426)
T PRK07906 21 GKGEREAAEYVAEKLAEVGLEPTYL 45 (426)
T ss_pred CchHHHHHHHHHHHHHhCCCCeEEe
Confidence 3667899999999999999997654
No 168
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=23.21 E-value=1e+02 Score=30.33 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=31.6
Q ss_pred ceeEEEecCCC--hhhH-HHHHHcCCcccCcEEEEEeCCCccchHHHHHHHHcCCeEEEEe
Q 009366 166 YGKVVFVNYGR--EEDY-RALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (536)
Q Consensus 166 ~g~lVyv~~G~--~~D~-~~L~~~gidv~GkIvlv~~g~~~~~~~kv~~A~~~GA~gvii~ 223 (536)
--+++|..||+ ..+. +.+.+.-..+.... |+--|++. ..++++.+.++||-.|++=
T Consensus 153 g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~-LivGGGIr-s~e~A~~~~~aGAD~IVvG 211 (230)
T PF01884_consen 153 GMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIP-LIVGGGIR-SPEQAREMAEAGADTIVVG 211 (230)
T ss_dssp T-SEEEEE--TTSSS-HHHHHHHHHHHSSSSE-EEEESS---SHHHHHHHHCTTSSEEEES
T ss_pred CCCEEEEEeCCCCCCCccHHHHHHHHhcCCcc-EEEeCCcC-CHHHHHHHHHCCCCEEEEC
Confidence 34899998854 4444 32222111233444 44446676 7899999999999988764
No 169
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=23.20 E-value=1.3e+02 Score=31.37 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeee
Q 009366 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 70 ~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
++.+.|+.|.+.|=.+ +.+.++++||.+.|+++|++++..
T Consensus 3 ~~~~~l~~Lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~ 42 (375)
T PRK13009 3 DVLELAQDLIRRPSVT--PDDAGCQDLLAERLEALGFTCERM 42 (375)
T ss_pred hHHHHHHHHhCCCCCC--CchhhHHHHHHHHHHHcCCeEEEe
Confidence 3456677777655443 456889999999999999987643
No 170
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=22.83 E-value=1.3e+02 Score=31.36 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeee
Q 009366 73 SYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 73 ~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
+.|+.|-+.|=.+ ..+.++++||.+.|+++|++++..
T Consensus 3 ~~l~~lv~ips~s--~~e~~~~~~i~~~l~~~G~~~~~~ 39 (370)
T TIGR01246 3 ELAKELISRPSVT--PNDAGCQDIIAERLEKLGFEIEWM 39 (370)
T ss_pred HHHHHHhcCCCCC--cchHHHHHHHHHHHHHCCCEEEEE
Confidence 4566666654344 346789999999999999997544
No 171
>PRK07205 hypothetical protein; Provisional
Probab=22.40 E-value=1.3e+02 Score=32.36 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHhhcCCCCCCCh--------hhHHHHHHHHHHHHHCCCceeee
Q 009366 67 SNYTVSSYLRDLTHHPHLAGTE--------PSLDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 67 ~~~~i~~~L~~ls~~~r~aGt~--------g~~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
+.+.+.+.|+.|.+.+=.++.+ +-.++++|+.+.|+++|++++.+
T Consensus 9 ~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 61 (444)
T PRK07205 9 VQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLD 61 (444)
T ss_pred hHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEc
Confidence 4456667777777654333322 22678999999999999987543
No 172
>PHA03049 IMV membrane protein; Provisional
Probab=21.52 E-value=4e+02 Score=20.88 Aligned_cols=27 Identities=4% Similarity=0.169 Sum_probs=19.5
Q ss_pred ChHHHHHHHhcccChHHHHHHHHHhhc
Q 009366 54 TALHFQKTFLSLSSNYTVSSYLRDLTH 80 (536)
Q Consensus 54 ~~~~~~~~~l~~~~~~~i~~~L~~ls~ 80 (536)
..+++.-.+.++++.+.+.+.-+.+++
T Consensus 41 ~~e~~kT~yvD~L~~~hl~SfyklFs~ 67 (68)
T PHA03049 41 KMEDLKTGYVDKLKSSHLNSFYKLFSS 67 (68)
T ss_pred CchhhhhhHHhhcCHHHHHHHHHHhcC
Confidence 446667788888888888876666553
No 173
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=21.48 E-value=1.2e+02 Score=31.85 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=33.7
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEE
Q 009366 74 YLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKA 115 (536)
Q Consensus 74 ~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~~v 115 (536)
.|+.|++-+=.+|- +.+.+++++++|++++.+++.+++--
T Consensus 3 ~L~~L~~~~gpSG~--E~~v~~~i~~~l~~~~~~v~~D~~GN 42 (350)
T TIGR03107 3 KIKEVTELQGTSGF--EHPIRDYLRQDITPLVDQVETDGLGG 42 (350)
T ss_pred HHHHHHhCCCCCCC--cHHHHHHHHHHHHhhCCEEEECCCCC
Confidence 48888887777776 68999999999999999998887754
No 174
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=21.42 E-value=1.6e+02 Score=30.98 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEEEE
Q 009366 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKALL 117 (536)
Q Consensus 70 ~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~~~v~~ 117 (536)
.+.+.|++|+..+=.+|- +.+..+|++++|++++.+++.+..-...
T Consensus 3 ~~~~~LkeL~~~~gpsG~--E~eVr~~~~~el~~~~~ev~~D~lGnli 48 (355)
T COG1363 3 ELLELLKELLEAPGPSGY--EEEVRDVLKEELEPLGDEVEVDRLGNLI 48 (355)
T ss_pred HHHHHHHHHHcCCCCCCc--HHHHHHHHHHHHHHhCCceEEcCCCcEE
Confidence 567889999987777777 4679999999999999999877765433
No 175
>PRK08262 hypothetical protein; Provisional
Probab=21.36 E-value=1.5e+02 Score=32.32 Aligned_cols=45 Identities=2% Similarity=0.033 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHhhcCCCCCCChhh-------HHHHHHHHHHHHHCCCceeee
Q 009366 67 SNYTVSSYLRDLTHHPHLAGTEPS-------LDTVRYVQSHFEQLKFNTHTV 111 (536)
Q Consensus 67 ~~~~i~~~L~~ls~~~r~aGt~g~-------~~~a~~i~~~~~~~Gl~~~~~ 111 (536)
+.+.+.+.|+.|.+.|=.++.++. .+.++|+.+.|+..|+++...
T Consensus 42 ~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~ 93 (486)
T PRK08262 42 DEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALERE 93 (486)
T ss_pred CHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEE
Confidence 456677788888876544554332 368999999999999976543
No 176
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=21.32 E-value=3.1e+02 Score=25.35 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=38.3
Q ss_pred cccCCCCCcceeEEEecCCChhhHHHHHHcCCcccCcEEEEEeCCCc---cchH-HHHHHHHcCCeEEEEeec
Q 009366 157 HAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVL---SRSG-VIFLAEAKGAIGVLLYAE 225 (536)
Q Consensus 157 ~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gidv~GkIvlv~~g~~~---~~~~-kv~~A~~~GA~gvii~~d 225 (536)
.++.+...+-|+.+=+-.. .++....+.....-.|.|+++..+... -.|+ ....|+.+|++|+|+-.-
T Consensus 24 ~~~~~~~~~~G~A~TV~~~-~d~~~~~~~i~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~ 95 (159)
T PRK09372 24 SSFGGRSSFGGPITTVKCF-EDNGLVKELLEEPGEGRVLVVDGGGSLRRALVGDNLAELAVDNGWEGIVVYGC 95 (159)
T ss_pred cccCCCCEEEEEEEEEEEe-CCcHHHHHHHhcCCCCeEEEEECCCCcCcEeehHHHHHHHHHcCCeEEEeccc
Confidence 3455555666666555433 111111111233568999999865421 0244 466688999999887643
No 177
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=21.05 E-value=96 Score=28.80 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=21.1
Q ss_pred Chhh-HHHHHHHHHHHHHCCCceeeee
Q 009366 87 TEPS-LDTVRYVQSHFEQLKFNTHTVE 112 (536)
Q Consensus 87 t~g~-~~~a~~i~~~~~~~Gl~~~~~~ 112 (536)
..|. .+.|++|+.+|++.|+++.+++
T Consensus 10 r~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 10 RDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 3444 5899999999999999987654
No 178
>PRK13004 peptidase; Reviewed
Probab=20.45 E-value=1.9e+02 Score=30.58 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCce
Q 009366 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT 108 (536)
Q Consensus 69 ~~i~~~L~~ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~ 108 (536)
+++.+.|++|.+.|=.+|. +.++++||.+.|+++|+++
T Consensus 15 ~~~~~~l~~lv~ips~s~~--e~~~a~~l~~~l~~~G~~~ 52 (399)
T PRK13004 15 ADMTRFLRDLIRIPSESGD--EKRVVKRIKEEMEKVGFDK 52 (399)
T ss_pred HHHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCcE
Confidence 4677888888887766654 6789999999999999984
Done!