BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009369
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 24/282 (8%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARN 303
+VPV +V VG ++V GE +PVD V +G + + ++GE P+ GD + G N
Sbjct: 145 AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATIN 204
Query: 304 LDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIALI 363
G + ++AT+ E+ L +IV+L E+A +KP +QR D+ + ++ + I
Sbjct: 205 NTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIP-----TVLLVAI 259
Query: 364 GPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXX-XXXXXXISSCARKGILLKGGQ 422
F++ W FI + + + ++V A PC + A GIL+K
Sbjct: 260 SAFIY-WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNAD 318
Query: 423 VLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVA 482
L+ + FDKTGTLT G + P+ G E+E L +A
Sbjct: 319 ALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------ERELLRLA 361
Query: 483 AAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTA 524
A E+ + HPI A+V ++ + ++ E G G+ A
Sbjct: 362 AIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA 403
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 24/282 (8%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARN 303
+VPV +V VG ++V GE +PVD V +G + + ++GE P+ GD + G N
Sbjct: 223 AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATIN 282
Query: 304 LDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIALI 363
G + ++AT+ E+ L +IV+L E+A +KP +QR D+ + ++ + I
Sbjct: 283 NTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIP-----TVLLVAI 337
Query: 364 GPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXX-XXXXXXISSCARKGILLKGGQ 422
F++ W FI + + + ++V A PC + A GIL+K
Sbjct: 338 SAFIY-WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNAD 396
Query: 423 VLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVA 482
L+ + FDKTGTLT G + P+ G E+E L +A
Sbjct: 397 ALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------ERELLRLA 439
Query: 483 AAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTA 524
A E+ + HPI A+V ++ + ++ E G G+ A
Sbjct: 440 AIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA 481
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 131/289 (45%), Gaps = 27/289 (9%)
Query: 243 RSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGAR 302
V + +V VG + V GE +PVD EV +G + + +TGE P+ + ++ G
Sbjct: 237 EEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATI 296
Query: 303 NLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIAL 362
N G ++KA +++ L RIVQ+ +AQ ++ +QR D + A+ L
Sbjct: 297 NQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVP-------AVIL 349
Query: 363 IGPFLF-KWSFIGTS-VCRGSVYRALGLMVAASPCXXXXXX-XXXXXXISSCARKGILLK 419
+ F W+ +G + A+ +++ A PC + A+ G+L+K
Sbjct: 350 VAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIK 409
Query: 420 GGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEAL 479
+ L+ + +T+ DKTGTLT G I T D E AL
Sbjct: 410 NAEALERMEKVNTLVVDKTGTLTEGHPKLTRI-----------VTDDF------VEDNAL 452
Query: 480 AVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNG 528
A+AAA+E + HP+ A+V + K L S++ FE G+G+ V+G
Sbjct: 453 ALAAALEHQSEHPLANAIVHAAKEKGLSLGSVEAFEAPTGKGVVGQVDG 501
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARN 303
+VPV +V VG ++V GE +PVD V +G + + ++GE P+ GD + G N
Sbjct: 24 AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATIN 83
Query: 304 LDGRMILKATKTWNESTLNRIVQLTEEA 331
G + ++AT+ E+ L +IV+L E+A
Sbjct: 84 NTGVLKIRATRVGGETLLAQIVKLVEDA 111
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 245 VPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNL 304
V V V+ G I V G PVD V +G + + +TGE P+ K G + G+ N
Sbjct: 37 VDVELVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQ 96
Query: 305 DGRMILKATKTWNESTLNRIVQLTEEAQ 332
+G +++ AT ++TL++IV+L EEAQ
Sbjct: 97 NGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 418 LKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKE 477
++ Q + + FDKTGTLT G + I G + E E
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRF---GVTDIVG--------------FNHSEDE 43
Query: 478 ALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNG 528
L +AA++E + HPI A+V+ + + ++ F PG+G+ VNG
Sbjct: 44 LLQIAASLEARSEHPIAAAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIVNG 94
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 418 LKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKE 477
++ Q + + FDKTGTLT G + I G + E E
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRF---GVTDIVG--------------FNHSEDE 43
Query: 478 ALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNG 528
L +AA++E + HPI A+V+ + + ++ F PG+G+ VNG
Sbjct: 44 LLQIAASLEARSEHPIAAAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIVNG 94
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Query: 414 KGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPN 473
KG+++K V + + TI FDKTGTLT G PI +I
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFDKTGTLTYG-------TPIVTQFI-------------- 50
Query: 474 CEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNG--IEV 531
+ +LA AA++E ++HPI +A+V ++ + + + + F+ G G+ ++ IEV
Sbjct: 51 GDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEV 110
Query: 532 LK 533
K
Sbjct: 111 KK 112
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Query: 414 KGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPN 473
KG+++K V + + TI F+KTGTLT G PI +I
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFEKTGTLTYG-------TPIVTQFI-------------- 50
Query: 474 CEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNG--IEV 531
+ +LA AA++E ++HPI +A+V ++ + + + + F+ G G+ ++ IEV
Sbjct: 51 GDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEV 110
Query: 532 LK 533
K
Sbjct: 111 KK 112
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Query: 414 KGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPN 473
KG+++K V + + TI F+KTGTLT G PI +I
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFNKTGTLTYG-------TPIVTQFI-------------- 50
Query: 474 CEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNG--IEV 531
+ +LA AA++E ++HPI +A+V ++ + + + + F+ G G+ ++ IEV
Sbjct: 51 GDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEV 110
Query: 532 LK 533
K
Sbjct: 111 KK 112
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCI 471
A GIL+K L+ + FDKTGTLT G + P+ G
Sbjct: 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-------------- 59
Query: 472 PNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTA 524
E+E L +AA E+ + HPI A+V ++ + ++ E G G+ A
Sbjct: 60 ---ERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA 109
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 28/230 (12%)
Query: 241 AYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQ-GTATITIEH--LTGE----VKPLEAKV 293
+ + + D+ G + V G+ VP D + + T+ ++ LTGE +K E
Sbjct: 137 SVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVP 196
Query: 294 GDR---------IPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDE 344
R + G G+ + T + + +I + +K LQ+ LDE
Sbjct: 197 DPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDE 256
Query: 345 FGEQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXX 404
FGEQ SK + +A+ LI F G S RG++Y A
Sbjct: 257 FGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIY----YFKIAVALAVAAIPEGL 312
Query: 405 XXXISSC--------ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGL 446
I++C A+K +++ ++ L I DKTGTLTT +
Sbjct: 313 PAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 362
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 28/230 (12%)
Query: 241 AYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQ-GTATITIEH--LTGE----VKPLEAKV 293
+ + + D+ G + V G+ VP D + + T+ ++ LTGE +K E
Sbjct: 136 SVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVP 195
Query: 294 GDR---------IPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDE 344
R + G G+ + T + + +I + +K LQ+ LDE
Sbjct: 196 DPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDE 255
Query: 345 FGEQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXX 404
FGEQ SK + +A+ LI F G S RG++Y A
Sbjct: 256 FGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIY----YFKIAVALAVAAIPEGL 311
Query: 405 XXXISSC--------ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGL 446
I++C A+K +++ ++ L I DKTGTLTT +
Sbjct: 312 PAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 361
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 90/230 (39%), Gaps = 28/230 (12%)
Query: 241 AYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQ-GTATITIEH--LTGE----VKPLEAKV 293
+ + + D+ G + V G+ VP D + + T+ ++ LTGE +K E
Sbjct: 136 SVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVP 195
Query: 294 GDR---------IPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDE 344
R + G G+ I T + + +I + +K LQ+ LDE
Sbjct: 196 DPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDE 255
Query: 345 FGEQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXX 404
FGEQ SK + +A+ LI F G S RG++Y A
Sbjct: 256 FGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIY----YFKIAVALAVAAIPEGL 311
Query: 405 XXXISSC--------ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGL 446
I++C A+K +++ ++ L I DKTGTLTT +
Sbjct: 312 PAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 361
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCI 471
A GIL+K L+ + FDKTGTLT G + P+ G
Sbjct: 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-------------- 59
Query: 472 PNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTA 524
E+E L +AA E+ + PI A+V ++ + ++ E G G+ A
Sbjct: 60 ---ERELLRLAAIAERRSEQPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA 109
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 89/230 (38%), Gaps = 28/230 (12%)
Query: 241 AYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQ-GTATITIEH--LTGE----VKPLEAKV 293
+ + + D+ G + V G+ VP D + + T+ ++ LTGE +K E
Sbjct: 136 SVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVP 195
Query: 294 GDR---------IPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDE 344
R + G G+ + T + + +I + +K LQ+ LDE
Sbjct: 196 DPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDE 255
Query: 345 FGEQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXX 404
FGEQ SK + +A+ LI F G S RG++Y A
Sbjct: 256 FGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIY----YFKIAVALAVAAIPEGL 311
Query: 405 XXXISSC--------ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGL 446
I++C A+K +++ ++ L I KTGTLTT +
Sbjct: 312 PAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQM 361
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 419 KGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEA 478
K L+ + FDKTGTLT G + P+ G E+E
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------EREL 43
Query: 479 LAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTA 524
L +AA E+ + HPI A+V ++ + ++ E G G+ A
Sbjct: 44 LRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA 89
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 19/211 (9%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTA-TITIEHLTGEVKPL--EAKVGDRIPGG 300
S+ +V VG + V G+ +P D + + LTGE +P + P
Sbjct: 154 SINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLE 213
Query: 301 ARNL--------DGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKX 352
RN+ +G T + + + RI L + + + ++ F
Sbjct: 214 TRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHF------- 266
Query: 353 XXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXXXISS-C 411
++ +G F S I +V +G++VA P +
Sbjct: 267 IHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRM 326
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLT 442
ARK L+K + ++ L S TI DKTGTLT
Sbjct: 327 ARKNCLVKNLEAVETLGSTSTICSDKTGTLT 357
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 19/203 (9%)
Query: 252 VGSYILVGAGEAVPVDCEVYQGTA-TITIEHLTGEVKPL--EAKVGDRIPGGARNLD--G 306
VG + + G+ VP D + Q + LTGE +P + P RN+
Sbjct: 197 VGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS 256
Query: 307 RMILKAT------KTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAI 360
M L+ T T + + + RI L + K + ++ F + + LAI
Sbjct: 257 TMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIA------GLAI 310
Query: 361 ALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXXXISS-CARKGILLK 419
F IG + R V+ + ++VA P + A K ++K
Sbjct: 311 LFGATFFIVAMCIGYTFLRAMVF-FMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVK 369
Query: 420 GGQVLDALASCHTIAFDKTGTLT 442
+ ++ L S I DKTGTLT
Sbjct: 370 NLEAVETLGSTSVICSDKTGTLT 392
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLT 442
ARK L+K + ++ L S TI DKTGTLT
Sbjct: 357 ARKNCLVKNLEAVETLGSTSTICSDKTGTLT 387
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 19/211 (9%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTA-TITIEHLTGEVKPL--EAKVGDRIPGG 300
S+ +V VG + V G+ +P D + + LTGE +P + P
Sbjct: 148 SINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLE 207
Query: 301 ARNL--------DGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKX 352
RN+ +G T + + + RI L + + + ++ F
Sbjct: 208 TRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHF------- 260
Query: 353 XXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXXXISS-C 411
++ +G F S I +V +G++VA P +
Sbjct: 261 IHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRM 320
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLT 442
ARK L+K + ++ L S TI KTGTLT
Sbjct: 321 ARKNCLVKNLEAVETLGSTSTICSXKTGTLT 351
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 250 VEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMI 309
++V + L +G+ P D E Y A + TG A VGD + G DG +I
Sbjct: 1142 IQVANAELKKSGDDKPQDVEEYPDDAELLYSEYTGRFWKPVAAVGDHVEAG----DGVII 1197
Query: 310 LKATKT 315
++A KT
Sbjct: 1198 IEAMKT 1203
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 334 NKPKLQRWLDEFGEQYSKXXXXLSLAIALI 363
+K LQ+ LDEFGEQ SK + +A+ LI
Sbjct: 3 DKTPLQQKLDEFGEQLSKVISLICVAVWLI 32
>pdb|2KMV|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Free Form
pdb|2KMX|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Bound Form
Length = 185
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 479 LAVAAAMEKGTTHPIGRAVVDH---SIGKDLPSVSIDRFEYFPGRGLTATVNGIEVL 532
LA+ E + HP+G A+ + + + ID F+ PG G++ V IE L
Sbjct: 28 LAIVGTAESNSEHPLGTAITKYCKQELDTETLGTCID-FQVVPGCGISCKVTNIEGL 83
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 466 DISCCIP--NCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLT 523
+++ +P E+E L +AA E+ + HPI A+V ++ + ++ E G G+
Sbjct: 4 EVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVV 63
Query: 524 A 524
A
Sbjct: 64 A 64
>pdb|3DCM|X Chain X, Crystal Structure Of The Thermotoga Maritima Spout Family
Rna-Methyltransferase Protein Tm1570 In Complex With S-
Adenosyl-L-Methionine
Length = 192
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 288 PLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGE 347
P++ K G I NLD I + +T+N + L + + L+ W + FG
Sbjct: 13 PIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGS 72
Query: 348 QYS 350
+Y+
Sbjct: 73 RYN 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,983,935
Number of Sequences: 62578
Number of extensions: 452856
Number of successful extensions: 924
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 29
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)