Query 009371
Match_columns 536
No_of_seqs 562 out of 4037
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 12:18:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2262 HflX GTPases [General 100.0 1.3E-86 2.9E-91 685.9 42.2 398 126-531 3-410 (411)
2 PRK11058 GTPase HflX; Provisio 100.0 2.8E-76 6E-81 631.1 46.3 401 126-533 8-420 (426)
3 TIGR03156 GTP_HflX GTP-binding 100.0 1.5E-70 3.3E-75 574.4 39.2 340 128-474 1-350 (351)
4 KOG0410 Predicted GTP binding 100.0 2E-58 4.3E-63 460.7 23.4 373 145-526 3-393 (410)
5 PF13167 GTP-bdg_N: GTP-bindin 100.0 7.6E-32 1.6E-36 229.9 11.3 93 143-237 3-95 (95)
6 cd01878 HflX HflX subfamily. 100.0 5.3E-28 1.1E-32 233.5 24.1 204 272-475 1-204 (204)
7 PRK05291 trmE tRNA modificatio 99.9 1.3E-24 2.7E-29 235.2 24.8 243 201-477 114-371 (449)
8 COG0486 ThdF Predicted GTPase 99.9 3.8E-22 8.3E-27 210.7 25.0 201 269-478 176-378 (454)
9 PF02421 FeoB_N: Ferrous iron 99.9 3E-22 6.6E-27 186.8 13.1 151 314-471 2-156 (156)
10 PRK12299 obgE GTPase CgtA; Rev 99.9 6.2E-21 1.4E-25 198.9 18.3 164 313-477 159-329 (335)
11 cd01897 NOG NOG1 is a nucleola 99.8 2.9E-20 6.3E-25 172.7 16.8 160 313-475 1-167 (168)
12 cd01898 Obg Obg subfamily. Th 99.8 3.6E-20 7.8E-25 172.2 17.2 161 314-475 2-170 (170)
13 COG1160 Predicted GTPases [Gen 99.8 4.1E-20 9E-25 194.9 18.1 158 313-475 4-164 (444)
14 TIGR00436 era GTP-binding prot 99.8 8.8E-20 1.9E-24 184.9 18.9 159 314-479 2-167 (270)
15 PRK12297 obgE GTPase CgtA; Rev 99.8 9.4E-20 2E-24 195.1 19.5 166 313-479 159-330 (424)
16 TIGR02729 Obg_CgtA Obg family 99.8 1E-19 2.2E-24 189.5 19.1 162 313-475 158-328 (329)
17 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.8E-19 6.1E-24 193.0 22.6 243 201-477 106-361 (442)
18 COG1159 Era GTPase [General fu 99.8 1E-19 2.2E-24 182.9 17.3 163 314-482 8-178 (298)
19 COG1163 DRG Predicted GTPase [ 99.8 8.1E-20 1.8E-24 184.6 15.6 224 279-508 28-333 (365)
20 PRK12296 obgE GTPase CgtA; Rev 99.8 1.8E-19 3.9E-24 195.5 19.0 165 313-479 160-343 (500)
21 cd04164 trmE TrmE (MnmE, ThdF, 99.8 5.5E-19 1.2E-23 160.8 18.3 153 314-475 3-156 (157)
22 PRK12298 obgE GTPase CgtA; Rev 99.8 3.9E-19 8.6E-24 188.9 19.3 166 313-479 160-336 (390)
23 cd01894 EngA1 EngA1 subfamily. 99.8 6.8E-19 1.5E-23 160.5 17.8 155 316-475 1-157 (157)
24 cd04119 RJL RJL (RabJ-Like) su 99.8 1.5E-18 3.2E-23 160.0 18.1 153 314-475 2-166 (168)
25 cd01861 Rab6 Rab6 subfamily. 99.8 1.5E-18 3.3E-23 159.8 18.1 153 314-475 2-161 (161)
26 cd04171 SelB SelB subfamily. 99.8 1.4E-18 3.1E-23 159.8 17.6 149 314-473 2-163 (164)
27 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2E-18 4.4E-23 160.4 18.7 154 313-476 3-164 (166)
28 cd01864 Rab19 Rab19 subfamily. 99.8 2.1E-18 4.5E-23 160.3 18.6 152 313-474 4-164 (165)
29 cd01881 Obg_like The Obg-like 99.8 4.9E-19 1.1E-23 165.0 14.2 157 317-474 1-175 (176)
30 cd01865 Rab3 Rab3 subfamily. 99.8 2.2E-18 4.7E-23 160.6 18.3 155 313-476 2-163 (165)
31 cd01868 Rab11_like Rab11-like. 99.8 2.4E-18 5.1E-23 159.6 18.3 153 313-475 4-164 (165)
32 cd04109 Rab28 Rab28 subfamily. 99.8 1.8E-18 4E-23 169.1 18.4 157 314-478 2-168 (215)
33 KOG1489 Predicted GTP-binding 99.8 3.5E-19 7.5E-24 179.4 13.4 159 313-474 197-365 (366)
34 cd04142 RRP22 RRP22 subfamily. 99.8 2.3E-18 5E-23 166.8 18.3 164 314-478 2-176 (198)
35 cd01867 Rab8_Rab10_Rab13_like 99.8 2.6E-18 5.7E-23 160.4 17.8 154 313-476 4-165 (167)
36 PRK15494 era GTPase Era; Provi 99.8 2.8E-18 6.1E-23 179.6 19.0 163 313-480 53-220 (339)
37 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.1E-18 6.8E-23 158.6 17.3 151 313-476 1-166 (168)
38 cd04122 Rab14 Rab14 subfamily. 99.8 5E-18 1.1E-22 158.1 18.6 154 313-476 3-164 (166)
39 cd01866 Rab2 Rab2 subfamily. 99.8 4.9E-18 1.1E-22 158.8 18.3 154 313-476 5-166 (168)
40 cd01896 DRG The developmentall 99.8 1.9E-18 4.2E-23 171.7 16.4 164 314-481 2-231 (233)
41 PRK00089 era GTPase Era; Revie 99.8 5.6E-18 1.2E-22 173.2 19.8 160 314-479 7-174 (292)
42 cd04112 Rab26 Rab26 subfamily. 99.8 6.2E-18 1.4E-22 162.0 18.8 155 314-478 2-165 (191)
43 smart00175 RAB Rab subfamily o 99.8 7.9E-18 1.7E-22 155.0 18.7 153 314-476 2-162 (164)
44 cd04120 Rab12 Rab12 subfamily. 99.8 4.2E-18 9.1E-23 165.8 17.7 154 314-477 2-164 (202)
45 cd04113 Rab4 Rab4 subfamily. 99.8 6.3E-18 1.4E-22 156.1 17.8 151 314-474 2-160 (161)
46 cd01879 FeoB Ferrous iron tran 99.8 2.6E-18 5.6E-23 157.3 14.8 152 317-476 1-157 (158)
47 COG1160 Predicted GTPases [Gen 99.8 2.6E-18 5.6E-23 181.4 16.6 164 312-480 178-355 (444)
48 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4.4E-18 9.5E-23 157.9 16.1 149 315-473 2-166 (167)
49 PRK03003 GTP-binding protein D 99.8 8.6E-18 1.9E-22 183.3 20.8 163 312-479 211-385 (472)
50 cd01860 Rab5_related Rab5-rela 99.8 1E-17 2.2E-22 154.6 18.1 154 313-475 2-162 (163)
51 PRK03003 GTP-binding protein D 99.8 7.7E-18 1.7E-22 183.6 19.8 161 311-477 37-200 (472)
52 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1E-17 2.3E-22 154.4 17.7 152 313-475 3-163 (164)
53 cd01895 EngA2 EngA2 subfamily. 99.8 2E-17 4.4E-22 152.5 19.4 157 313-474 3-173 (174)
54 cd04154 Arl2 Arl2 subfamily. 99.8 9.8E-18 2.1E-22 157.5 17.3 149 312-473 14-172 (173)
55 COG1084 Predicted GTPase [Gene 99.8 2.3E-17 5E-22 167.5 21.0 190 282-476 137-336 (346)
56 cd04140 ARHI_like ARHI subfami 99.8 7E-18 1.5E-22 157.1 16.0 152 313-474 2-163 (165)
57 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.1E-17 2.4E-22 153.2 17.1 152 313-475 2-161 (162)
58 cd04136 Rap_like Rap-like subf 99.8 1.6E-17 3.5E-22 153.1 18.0 152 313-475 2-162 (163)
59 cd01863 Rab18 Rab18 subfamily. 99.8 1.7E-17 3.6E-22 153.1 18.1 152 314-474 2-160 (161)
60 cd04157 Arl6 Arl6 subfamily. 99.8 1.5E-17 3.2E-22 153.1 17.7 148 315-473 2-161 (162)
61 smart00173 RAS Ras subfamily o 99.8 1.2E-17 2.7E-22 154.4 17.3 152 314-476 2-162 (164)
62 cd04163 Era Era subfamily. Er 99.8 2.6E-17 5.6E-22 150.1 19.1 158 313-475 4-168 (168)
63 cd04123 Rab21 Rab21 subfamily. 99.8 2E-17 4.4E-22 151.5 18.5 152 314-475 2-161 (162)
64 cd04151 Arl1 Arl1 subfamily. 99.8 1.5E-17 3.2E-22 153.7 17.5 147 314-473 1-157 (158)
65 TIGR03594 GTPase_EngA ribosome 99.8 1.9E-17 4.2E-22 177.8 21.1 163 312-479 172-347 (429)
66 TIGR03594 GTPase_EngA ribosome 99.8 1.3E-17 2.7E-22 179.3 19.6 159 314-477 1-161 (429)
67 cd04144 Ras2 Ras2 subfamily. 99.8 1.4E-17 3E-22 159.4 17.8 154 314-478 1-165 (190)
68 cd00879 Sar1 Sar1 subfamily. 99.8 1.9E-17 4.1E-22 157.6 18.1 149 313-474 20-189 (190)
69 cd04114 Rab30 Rab30 subfamily. 99.8 2.3E-17 5.1E-22 153.3 18.3 154 312-475 7-168 (169)
70 cd04124 RabL2 RabL2 subfamily. 99.8 2E-17 4.2E-22 153.9 17.5 151 314-477 2-159 (161)
71 cd04149 Arf6 Arf6 subfamily. 99.8 2.1E-17 4.6E-22 155.4 17.9 149 312-473 9-167 (168)
72 cd04127 Rab27A Rab27a subfamil 99.8 2.4E-17 5.3E-22 155.1 18.3 155 313-476 5-177 (180)
73 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.3E-17 4.9E-22 153.6 17.7 147 314-473 2-158 (159)
74 cd04106 Rab23_lke Rab23-like s 99.8 2.2E-17 4.8E-22 152.2 17.4 151 314-474 2-161 (162)
75 cd01862 Rab7 Rab7 subfamily. 99.8 2.9E-17 6.4E-22 152.6 18.0 154 314-477 2-168 (172)
76 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2.2E-17 4.7E-22 159.5 17.7 156 314-478 2-170 (201)
77 cd00154 Rab Rab family. Rab G 99.8 2.8E-17 6E-22 148.9 17.2 151 314-472 2-158 (159)
78 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2E-17 4.4E-22 152.4 16.6 147 315-473 2-159 (160)
79 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.1E-17 2.4E-22 158.5 14.8 158 312-479 9-175 (205)
80 cd04175 Rap1 Rap1 subgroup. T 99.8 3.7E-17 8E-22 151.6 18.0 153 313-476 2-163 (164)
81 cd04125 RabA_like RabA-like su 99.8 3.7E-17 8.1E-22 155.8 18.3 155 314-478 2-164 (188)
82 PRK00093 GTP-binding protein D 99.8 3.2E-17 7E-22 176.6 20.0 157 313-475 2-161 (435)
83 smart00177 ARF ARF-like small 99.8 5.1E-17 1.1E-21 153.7 18.7 151 313-476 14-174 (175)
84 cd04117 Rab15 Rab15 subfamily. 99.8 4.4E-17 9.6E-22 151.6 18.0 151 314-474 2-160 (161)
85 cd04139 RalA_RalB RalA/RalB su 99.8 3.7E-17 8.1E-22 150.3 17.3 153 314-476 2-162 (164)
86 PF00009 GTP_EFTU: Elongation 99.8 1.4E-17 3E-22 159.5 14.7 153 312-476 3-187 (188)
87 cd04101 RabL4 RabL4 (Rab-like4 99.8 5.1E-17 1.1E-21 150.3 18.0 152 314-475 2-163 (164)
88 cd04158 ARD1 ARD1 subfamily. 99.8 3E-17 6.5E-22 154.0 16.6 153 314-478 1-163 (169)
89 cd01890 LepA LepA subfamily. 99.8 4.2E-17 9E-22 153.2 17.5 151 314-476 2-177 (179)
90 PRK00093 GTP-binding protein D 99.8 6.8E-17 1.5E-21 174.1 21.6 162 312-478 173-346 (435)
91 cd00881 GTP_translation_factor 99.8 4.7E-17 1E-21 153.1 17.8 149 315-476 2-187 (189)
92 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 4.3E-17 9.3E-22 153.8 17.5 148 313-473 16-173 (174)
93 smart00178 SAR Sar1p-like memb 99.7 4.3E-17 9.4E-22 155.5 17.7 150 313-474 18-183 (184)
94 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 4E-17 8.7E-22 154.1 17.0 153 313-477 3-165 (172)
95 cd04110 Rab35 Rab35 subfamily. 99.7 7.1E-17 1.5E-21 155.9 19.1 155 312-477 6-168 (199)
96 cd00877 Ran Ran (Ras-related n 99.7 3.9E-17 8.5E-22 153.0 16.7 153 314-477 2-160 (166)
97 PLN00223 ADP-ribosylation fact 99.7 7.1E-17 1.5E-21 154.0 18.5 152 313-477 18-179 (181)
98 cd04176 Rap2 Rap2 subgroup. T 99.7 5E-17 1.1E-21 150.4 16.9 152 313-475 2-162 (163)
99 cd04121 Rab40 Rab40 subfamily. 99.7 6.5E-17 1.4E-21 155.8 18.2 155 313-478 7-169 (189)
100 PLN03110 Rab GTPase; Provision 99.7 5.3E-17 1.2E-21 159.2 17.9 155 313-477 13-175 (216)
101 cd04155 Arl3 Arl3 subfamily. 99.7 9.2E-17 2E-21 150.0 18.6 149 312-473 14-172 (173)
102 PRK04213 GTP-binding protein; 99.7 3.7E-17 8.1E-22 157.3 16.3 157 312-478 9-194 (201)
103 cd00878 Arf_Arl Arf (ADP-ribos 99.7 7.4E-17 1.6E-21 148.5 17.6 147 314-473 1-157 (158)
104 cd01889 SelB_euk SelB subfamil 99.7 4.7E-17 1E-21 156.1 16.8 152 314-477 2-187 (192)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 6.7E-17 1.5E-21 153.9 17.5 155 313-477 4-171 (183)
106 cd04159 Arl10_like Arl10-like 99.7 9.6E-17 2.1E-21 145.6 17.7 147 315-473 2-158 (159)
107 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 7.1E-17 1.5E-21 152.1 17.3 154 314-477 2-166 (170)
108 cd01893 Miro1 Miro1 subfamily. 99.7 5.9E-17 1.3E-21 151.2 16.7 152 314-476 2-164 (166)
109 COG0536 Obg Predicted GTPase [ 99.7 2.1E-17 4.6E-22 168.4 14.4 163 314-479 161-336 (369)
110 PTZ00369 Ras-like protein; Pro 99.7 7.1E-17 1.5E-21 154.4 16.5 155 312-478 5-169 (189)
111 PTZ00133 ADP-ribosylation fact 99.7 1.2E-16 2.6E-21 152.4 17.9 153 313-478 18-180 (182)
112 PRK09518 bifunctional cytidyla 99.7 1E-16 2.2E-21 182.8 20.1 163 311-478 449-623 (712)
113 cd04111 Rab39 Rab39 subfamily. 99.7 1.2E-16 2.7E-21 156.1 17.9 157 313-478 3-168 (211)
114 cd00876 Ras Ras family. The R 99.7 1.8E-16 3.9E-21 144.9 17.9 151 314-474 1-159 (160)
115 PRK09518 bifunctional cytidyla 99.7 8.8E-17 1.9E-21 183.3 19.5 160 312-477 275-437 (712)
116 cd04146 RERG_RasL11_like RERG/ 99.7 5.7E-17 1.2E-21 150.7 14.8 154 314-476 1-164 (165)
117 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.8E-16 3.9E-21 148.5 18.3 154 313-476 3-169 (170)
118 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.1E-16 2.4E-21 152.9 17.0 151 314-477 2-167 (182)
119 cd00880 Era_like Era (E. coli 99.7 1.2E-16 2.5E-21 143.7 16.3 153 317-474 1-162 (163)
120 cd04126 Rab20 Rab20 subfamily. 99.7 1.1E-16 2.4E-21 157.9 17.2 151 314-477 2-191 (220)
121 cd04116 Rab9 Rab9 subfamily. 99.7 2E-16 4.3E-21 147.5 18.2 152 313-474 6-169 (170)
122 cd04137 RheB Rheb (Ras Homolog 99.7 1.8E-16 3.9E-21 149.4 17.3 154 314-478 3-165 (180)
123 COG0370 FeoB Fe2+ transport sy 99.7 5.4E-17 1.2E-21 178.2 15.6 161 313-480 4-168 (653)
124 PLN03108 Rab family protein; P 99.7 2.8E-16 6.1E-21 153.3 19.1 155 313-477 7-169 (210)
125 TIGR02528 EutP ethanolamine ut 99.7 9.2E-17 2E-21 145.6 14.6 135 314-472 2-141 (142)
126 cd04132 Rho4_like Rho4-like su 99.7 1.4E-16 3.1E-21 151.1 16.2 154 314-478 2-169 (187)
127 KOG0078 GTP-binding protein SE 99.7 1.7E-16 3.7E-21 152.3 16.6 156 312-477 12-175 (207)
128 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.3E-16 2.7E-21 149.7 15.4 147 314-473 1-166 (167)
129 PLN03071 GTP-binding nuclear p 99.7 1.6E-16 3.5E-21 156.2 16.9 155 312-478 13-174 (219)
130 cd04118 Rab24 Rab24 subfamily. 99.7 3E-16 6.5E-21 149.9 18.3 152 314-477 2-167 (193)
131 PRK09866 hypothetical protein; 99.7 2.3E-16 5.1E-21 172.7 19.3 183 273-473 42-350 (741)
132 cd01892 Miro2 Miro2 subfamily. 99.7 1.7E-16 3.6E-21 149.3 15.8 153 312-476 4-166 (169)
133 PRK15467 ethanolamine utilizat 99.7 1.8E-16 3.8E-21 148.2 15.4 142 314-477 3-148 (158)
134 cd04147 Ras_dva Ras-dva subfam 99.7 3.4E-16 7.3E-21 151.0 17.8 153 314-477 1-164 (198)
135 PLN03118 Rab family protein; P 99.7 4.4E-16 9.5E-21 151.6 18.5 155 313-478 15-179 (211)
136 cd00157 Rho Rho (Ras homology) 99.7 1.1E-16 2.4E-21 148.6 13.5 150 314-473 2-170 (171)
137 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 4E-16 8.6E-21 147.7 16.5 158 313-479 23-188 (221)
138 KOG0092 GTPase Rab5/YPT51 and 99.7 1.4E-16 3.1E-21 150.6 12.9 158 313-479 6-170 (200)
139 cd04148 RGK RGK subfamily. Th 99.7 6.5E-16 1.4E-20 152.2 18.4 153 314-477 2-164 (221)
140 cd04177 RSR1 RSR1 subgroup. R 99.7 4.9E-16 1.1E-20 145.2 16.5 151 314-475 3-163 (168)
141 cd01871 Rac1_like Rac1-like su 99.7 3.2E-16 7E-21 148.3 15.4 148 314-474 3-173 (174)
142 smart00174 RHO Rho (Ras homolo 99.7 2.3E-16 4.9E-21 147.5 14.1 149 315-475 1-171 (174)
143 PRK09554 feoB ferrous iron tra 99.7 3.9E-16 8.4E-21 178.4 18.5 157 313-476 4-168 (772)
144 cd01874 Cdc42 Cdc42 subfamily. 99.7 5.7E-16 1.2E-20 146.7 16.6 149 313-474 2-173 (175)
145 cd04133 Rop_like Rop subfamily 99.7 2.6E-16 5.7E-21 149.8 14.4 151 313-476 2-173 (176)
146 cd04143 Rhes_like Rhes_like su 99.7 8.6E-16 1.9E-20 154.1 18.8 151 314-476 2-171 (247)
147 cd04134 Rho3 Rho3 subfamily. 99.7 3.2E-16 6.9E-21 150.1 14.9 151 314-477 2-175 (189)
148 cd01888 eIF2_gamma eIF2-gamma 99.7 4.6E-16 9.9E-21 151.2 16.1 153 314-477 2-200 (203)
149 cd01875 RhoG RhoG subfamily. 99.7 6.3E-16 1.4E-20 148.5 16.6 152 313-477 4-178 (191)
150 COG0218 Predicted GTPase [Gene 99.7 1.4E-15 3.1E-20 145.8 18.6 158 311-477 23-198 (200)
151 KOG0098 GTPase Rab2, small G p 99.7 4.7E-16 1E-20 146.2 14.7 155 312-476 6-168 (216)
152 cd04131 Rnd Rnd subfamily. Th 99.7 4.3E-16 9.4E-21 148.3 14.8 149 314-474 3-174 (178)
153 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 5.9E-16 1.3E-20 148.2 15.7 149 313-474 6-178 (182)
154 cd01899 Ygr210 Ygr210 subfamil 99.7 1.3E-15 2.8E-20 158.0 19.2 183 315-499 1-295 (318)
155 TIGR00231 small_GTP small GTP- 99.7 1.3E-15 2.9E-20 136.8 16.8 151 313-472 2-160 (161)
156 smart00176 RAN Ran (Ras-relate 99.7 9.7E-16 2.1E-20 149.0 16.9 149 318-478 1-156 (200)
157 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 8.7E-16 1.9E-20 152.7 16.7 153 313-477 14-189 (232)
158 cd04135 Tc10 TC10 subfamily. 99.7 4.8E-16 1E-20 145.3 14.0 151 314-475 2-173 (174)
159 cd01870 RhoA_like RhoA-like su 99.7 9.9E-16 2.1E-20 143.3 15.8 151 313-475 2-174 (175)
160 TIGR03598 GTPase_YsxC ribosome 99.7 9.8E-16 2.1E-20 145.3 15.9 146 311-465 17-179 (179)
161 PRK00454 engB GTP-binding prot 99.7 2.4E-15 5.2E-20 143.5 18.6 160 311-477 23-195 (196)
162 TIGR00437 feoB ferrous iron tr 99.7 4.9E-16 1.1E-20 173.4 15.5 150 319-475 1-154 (591)
163 cd01891 TypA_BipA TypA (tyrosi 99.7 2.8E-15 6.2E-20 143.9 18.8 142 313-467 3-173 (194)
164 cd00882 Ras_like_GTPase Ras-li 99.7 2.1E-15 4.6E-20 133.4 15.6 148 317-472 1-156 (157)
165 CHL00189 infB translation init 99.7 1.6E-15 3.4E-20 171.6 18.3 152 311-475 243-409 (742)
166 TIGR00487 IF-2 translation ini 99.7 1.2E-15 2.6E-20 169.8 17.1 149 312-473 87-247 (587)
167 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.2E-15 4.8E-20 141.0 15.7 144 315-472 2-162 (164)
168 cd04103 Centaurin_gamma Centau 99.7 3.5E-15 7.5E-20 139.3 16.9 145 314-474 2-157 (158)
169 cd01886 EF-G Elongation factor 99.7 5E-15 1.1E-19 150.5 19.0 183 315-535 2-204 (270)
170 cd01884 EF_Tu EF-Tu subfamily. 99.7 3.1E-15 6.8E-20 144.9 16.5 138 314-464 4-171 (195)
171 PF01926 MMR_HSR1: 50S ribosom 99.7 2.1E-15 4.6E-20 132.9 13.9 114 314-433 1-116 (116)
172 PRK05306 infB translation init 99.7 2E-15 4.2E-20 172.2 17.3 149 311-473 289-449 (787)
173 cd04130 Wrch_1 Wrch-1 subfamil 99.6 2.9E-15 6.4E-20 140.7 15.5 147 314-472 2-170 (173)
174 KOG1191 Mitochondrial GTPase [ 99.6 2.7E-15 5.9E-20 158.8 16.5 165 313-479 269-453 (531)
175 TIGR00475 selB selenocysteine- 99.6 2.8E-15 6E-20 167.2 17.5 151 314-477 2-167 (581)
176 KOG1423 Ras-like GTPase ERA [C 99.6 1.8E-15 4E-20 151.9 14.1 171 314-488 74-283 (379)
177 cd01873 RhoBTB RhoBTB subfamil 99.6 2.9E-15 6.3E-20 145.0 15.1 150 313-474 3-194 (195)
178 cd01876 YihA_EngB The YihA (En 99.6 7.3E-15 1.6E-19 134.4 16.8 153 315-475 2-170 (170)
179 PF00071 Ras: Ras family; Int 99.6 3.5E-15 7.7E-20 137.6 14.6 154 314-476 1-161 (162)
180 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.9E-15 4.1E-20 147.4 13.4 142 314-467 1-185 (208)
181 KOG0087 GTPase Rab11/YPT3, sma 99.6 2.2E-15 4.8E-20 144.3 13.2 155 312-476 14-176 (222)
182 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 6.4E-15 1.4E-19 145.6 16.7 150 314-475 3-175 (222)
183 KOG0394 Ras-related GTPase [Ge 99.6 2.3E-15 5E-20 141.3 12.1 159 310-478 7-180 (210)
184 PF00025 Arf: ADP-ribosylation 99.6 5.3E-15 1.1E-19 140.4 14.2 151 313-475 15-175 (175)
185 PRK10512 selenocysteinyl-tRNA- 99.6 8.4E-15 1.8E-19 164.1 17.1 152 314-477 2-167 (614)
186 cd04129 Rho2 Rho2 subfamily. 99.6 7.3E-15 1.6E-19 140.3 14.3 153 314-477 3-174 (187)
187 TIGR00491 aIF-2 translation in 99.6 1E-14 2.2E-19 162.3 17.3 149 312-473 4-213 (590)
188 KOG0093 GTPase Rab3, small G p 99.6 1E-14 2.2E-19 132.3 13.1 158 313-479 22-186 (193)
189 TIGR01393 lepA GTP-binding pro 99.6 2.6E-14 5.7E-19 159.7 18.8 154 313-478 4-182 (595)
190 cd04170 EF-G_bact Elongation f 99.6 3.8E-14 8.3E-19 143.4 18.1 182 315-534 2-201 (268)
191 PTZ00132 GTP-binding nuclear p 99.6 7.3E-14 1.6E-18 136.3 19.1 155 312-478 9-170 (215)
192 KOG0080 GTPase Rab18, small G 99.6 1.4E-14 3.1E-19 133.1 12.5 156 313-478 12-176 (209)
193 PRK09602 translation-associate 99.6 4.1E-14 8.9E-19 150.9 18.0 166 313-479 2-274 (396)
194 cd04169 RF3 RF3 subfamily. Pe 99.6 3.5E-14 7.7E-19 144.0 16.2 185 313-535 3-212 (267)
195 PF10662 PduV-EutP: Ethanolami 99.6 2.8E-14 6.1E-19 131.0 13.4 136 313-472 2-142 (143)
196 KOG0095 GTPase Rab30, small G 99.6 3.3E-14 7.1E-19 129.2 11.9 155 312-476 7-169 (213)
197 PRK05433 GTP-binding protein L 99.6 1.5E-13 3.2E-18 153.8 19.4 154 312-477 7-185 (600)
198 TIGR01394 TypA_BipA GTP-bindin 99.5 1.2E-13 2.6E-18 154.2 18.1 152 314-478 3-193 (594)
199 cd04165 GTPBP1_like GTPBP1-lik 99.5 1.8E-13 3.9E-18 135.4 17.1 148 314-473 1-220 (224)
200 PRK12736 elongation factor Tu; 99.5 1.2E-13 2.5E-18 147.6 16.9 151 312-476 12-201 (394)
201 COG0532 InfB Translation initi 99.5 6.7E-14 1.4E-18 150.3 14.8 151 312-475 5-169 (509)
202 cd01883 EF1_alpha Eukaryotic e 99.5 5.1E-14 1.1E-18 138.5 12.9 139 315-465 2-194 (219)
203 CHL00071 tufA elongation facto 99.5 1.1E-13 2.4E-18 148.4 16.4 151 312-475 12-210 (409)
204 KOG0086 GTPase Rab4, small G p 99.5 1.2E-13 2.7E-18 126.0 13.7 153 313-475 10-170 (214)
205 KOG0079 GTP-binding protein H- 99.5 1.1E-13 2.5E-18 125.6 13.4 154 313-478 9-171 (198)
206 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.3E-13 5E-18 131.2 16.5 162 314-477 2-185 (196)
207 PRK12317 elongation factor 1-a 99.5 5.2E-14 1.1E-18 151.6 13.3 142 313-466 7-195 (425)
208 KOG1145 Mitochondrial translat 99.5 1E-13 2.2E-18 148.1 15.0 151 312-475 153-315 (683)
209 TIGR03680 eif2g_arch translati 99.5 1.2E-13 2.6E-18 148.1 15.8 153 313-476 5-196 (406)
210 PTZ00258 GTP-binding protein; 99.5 1.8E-13 4E-18 145.0 16.8 89 313-402 22-126 (390)
211 KOG0073 GTP-binding ADP-ribosy 99.5 8E-13 1.7E-17 122.2 17.9 152 314-477 18-179 (185)
212 PRK04004 translation initiatio 99.5 2.1E-13 4.5E-18 152.2 16.2 149 312-473 6-215 (586)
213 cd04168 TetM_like Tet(M)-like 99.5 4.2E-13 9.1E-18 133.9 16.6 111 315-438 2-130 (237)
214 PRK04000 translation initiatio 99.5 2.9E-13 6.3E-18 145.4 16.2 155 312-477 9-202 (411)
215 PRK12735 elongation factor Tu; 99.5 2.5E-13 5.4E-18 145.2 15.5 151 313-476 13-203 (396)
216 KOG0091 GTPase Rab39, small G 99.5 2.6E-13 5.6E-18 125.2 13.2 157 313-478 9-175 (213)
217 PRK00049 elongation factor Tu; 99.5 4E-13 8.6E-18 143.6 16.2 151 313-476 13-203 (396)
218 PRK10218 GTP-binding protein; 99.5 5.1E-13 1.1E-17 149.2 17.6 154 312-478 5-197 (607)
219 PLN03127 Elongation factor Tu; 99.5 5.7E-13 1.2E-17 144.4 17.5 152 312-476 61-252 (447)
220 KOG0075 GTP-binding ADP-ribosy 99.5 5E-13 1.1E-17 121.4 13.6 151 314-476 22-182 (186)
221 PLN03126 Elongation factor Tu; 99.5 7.3E-13 1.6E-17 144.5 17.6 139 311-462 80-248 (478)
222 TIGR00483 EF-1_alpha translati 99.5 1.8E-13 3.9E-18 147.5 12.7 143 312-466 7-197 (426)
223 COG3596 Predicted GTPase [Gene 99.5 3.7E-13 7.9E-18 134.3 12.9 162 314-478 41-224 (296)
224 PTZ00327 eukaryotic translatio 99.5 6.5E-13 1.4E-17 144.0 15.4 154 313-477 35-234 (460)
225 TIGR00485 EF-Tu translation el 99.5 7.4E-13 1.6E-17 141.5 15.2 150 313-475 13-200 (394)
226 KOG1490 GTP-binding protein CR 99.5 4.1E-13 8.9E-18 142.3 12.6 184 286-474 141-339 (620)
227 cd04102 RabL3 RabL3 (Rab-like3 99.4 1.7E-12 3.8E-17 126.5 15.5 140 314-462 2-176 (202)
228 TIGR02034 CysN sulfate adenyly 99.4 9.7E-13 2.1E-17 141.1 14.4 141 314-466 2-187 (406)
229 KOG0462 Elongation factor-type 99.4 1E-12 2.2E-17 140.5 14.0 156 313-480 61-239 (650)
230 COG1100 GTPase SAR1 and relate 99.4 4.2E-12 9.2E-17 123.3 17.2 155 313-477 6-186 (219)
231 cd04105 SR_beta Signal recogni 99.4 3.9E-12 8.4E-17 123.8 16.2 116 313-439 1-124 (203)
232 cd04167 Snu114p Snu114p subfam 99.4 2.3E-12 5E-17 126.0 14.7 112 314-437 2-136 (213)
233 cd01900 YchF YchF subfamily. 99.4 1.5E-12 3.2E-17 132.4 13.6 87 315-402 1-103 (274)
234 KOG0088 GTPase Rab21, small G 99.4 3.3E-13 7.1E-18 123.9 7.7 153 313-476 14-175 (218)
235 PRK05506 bifunctional sulfate 99.4 1.4E-12 3E-17 147.3 14.1 142 313-466 25-211 (632)
236 KOG0395 Ras-related GTPase [Ge 99.4 2.8E-12 6.1E-17 124.5 14.1 154 313-477 4-166 (196)
237 cd04104 p47_IIGP_like p47 (47- 99.4 2.8E-12 6E-17 124.1 13.9 156 314-478 3-186 (197)
238 PRK09601 GTP-binding protein Y 99.4 4.8E-12 1E-16 132.9 16.4 89 313-402 3-107 (364)
239 TIGR00484 EF-G translation elo 99.4 5.2E-12 1.1E-16 144.0 18.0 114 312-438 10-141 (689)
240 PRK05124 cysN sulfate adenylyl 99.4 2.1E-12 4.5E-17 141.1 14.0 145 311-467 26-216 (474)
241 PRK00007 elongation factor G; 99.4 8.7E-12 1.9E-16 142.2 18.8 115 312-439 10-142 (693)
242 KOG1486 GTP-binding protein DR 99.4 3.7E-12 7.9E-17 125.2 13.1 184 311-500 61-325 (364)
243 KOG0097 GTPase Rab14, small G 99.4 1.1E-11 2.4E-16 111.9 14.0 153 312-474 11-171 (215)
244 KOG0083 GTPase Rab26/Rab37, sm 99.4 6E-13 1.3E-17 119.0 5.8 151 317-478 2-162 (192)
245 PRK12739 elongation factor G; 99.4 1.1E-11 2.4E-16 141.3 17.7 115 312-439 8-140 (691)
246 PF08477 Miro: Miro-like prote 99.4 4.2E-12 9.2E-17 111.5 10.9 112 314-435 1-119 (119)
247 PTZ00141 elongation factor 1- 99.3 1.1E-11 2.4E-16 134.5 14.3 141 313-466 8-203 (446)
248 PRK13351 elongation factor G; 99.3 4.2E-11 9E-16 136.6 18.4 185 312-534 8-213 (687)
249 PRK00741 prfC peptide chain re 99.3 3.3E-11 7.2E-16 133.1 16.9 158 313-508 11-190 (526)
250 cd01882 BMS1 Bms1. Bms1 is an 99.3 5.3E-11 1.1E-15 117.8 16.7 132 312-462 39-182 (225)
251 TIGR00503 prfC peptide chain r 99.3 4.6E-11 9.9E-16 132.0 16.7 158 313-508 12-191 (527)
252 cd01885 EF2 EF2 (for archaea a 99.3 2.2E-11 4.8E-16 120.4 11.8 112 314-437 2-138 (222)
253 PLN00023 GTP-binding protein; 99.3 2.7E-11 5.9E-16 125.3 12.9 118 313-439 22-166 (334)
254 KOG0070 GTP-binding ADP-ribosy 99.3 2.3E-11 5.1E-16 114.8 11.0 154 313-478 18-180 (181)
255 KOG0081 GTPase Rab27, small G 99.3 2.2E-11 4.7E-16 112.1 10.1 151 315-477 12-182 (219)
256 PLN00043 elongation factor 1-a 99.3 4.9E-11 1.1E-15 129.4 14.1 142 313-466 8-203 (447)
257 PTZ00099 rab6; Provisional 99.3 1.1E-10 2.3E-15 111.4 14.4 108 360-477 29-143 (176)
258 KOG0076 GTP-binding ADP-ribosy 99.2 4.2E-11 9.1E-16 111.8 10.3 156 313-478 18-189 (197)
259 COG0481 LepA Membrane GTPase L 99.2 3.5E-11 7.5E-16 127.2 10.8 154 314-479 11-189 (603)
260 COG2229 Predicted GTPase [Gene 99.2 2.2E-10 4.8E-15 108.3 15.0 149 313-474 11-176 (187)
261 COG0012 Predicted GTPase, prob 99.2 4.4E-11 9.4E-16 124.5 11.2 88 313-403 3-109 (372)
262 PRK13768 GTPase; Provisional 99.2 1.1E-10 2.4E-15 117.6 13.0 115 360-477 97-248 (253)
263 PRK09435 membrane ATPase/prote 99.2 1.2E-10 2.5E-15 121.6 13.3 98 359-476 148-260 (332)
264 smart00053 DYNc Dynamin, GTPas 99.2 5.6E-10 1.2E-14 111.6 16.3 129 309-440 23-208 (240)
265 cd01853 Toc34_like Toc34-like 99.2 6.3E-10 1.4E-14 111.9 16.5 127 312-439 31-164 (249)
266 PRK12740 elongation factor G; 99.2 6.7E-10 1.5E-14 126.4 17.8 108 318-438 1-126 (668)
267 cd01850 CDC_Septin CDC/Septin. 99.2 5.4E-10 1.2E-14 114.1 15.0 122 313-440 5-159 (276)
268 COG4917 EutP Ethanolamine util 99.2 3.1E-10 6.7E-15 101.0 11.3 138 313-473 2-143 (148)
269 COG1217 TypA Predicted membran 99.1 3E-10 6.4E-15 120.0 12.4 155 312-479 5-198 (603)
270 COG5256 TEF1 Translation elong 99.1 2.2E-10 4.8E-15 120.1 11.4 142 313-466 8-201 (428)
271 PF00350 Dynamin_N: Dynamin fa 99.1 3.5E-10 7.5E-15 105.5 11.6 113 315-434 1-168 (168)
272 TIGR02836 spore_IV_A stage IV 99.1 1E-09 2.2E-14 115.8 16.1 164 314-478 19-236 (492)
273 TIGR00750 lao LAO/AO transport 99.1 8.4E-10 1.8E-14 113.9 15.1 99 359-476 126-238 (300)
274 PF04548 AIG1: AIG1 family; I 99.1 9.6E-10 2.1E-14 107.8 14.4 164 314-479 2-189 (212)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.1 1.6E-09 3.5E-14 111.5 15.9 125 311-438 37-167 (313)
276 PRK14845 translation initiatio 99.1 7.5E-10 1.6E-14 129.6 14.5 138 324-474 473-671 (1049)
277 COG0480 FusA Translation elong 99.1 1.5E-09 3.1E-14 122.8 16.1 185 312-534 10-213 (697)
278 KOG1532 GTPase XAB1, interacts 99.1 4.3E-10 9.4E-15 112.1 9.6 162 313-479 20-267 (366)
279 COG5257 GCD11 Translation init 99.1 6.1E-10 1.3E-14 113.1 10.6 156 313-478 11-204 (415)
280 KOG4252 GTP-binding protein [S 99.1 1.3E-10 2.9E-15 108.8 4.5 154 313-477 21-182 (246)
281 TIGR00073 hypB hydrogenase acc 99.0 1E-09 2.3E-14 107.0 11.0 52 424-475 148-206 (207)
282 PRK10463 hydrogenase nickel in 99.0 1.2E-09 2.7E-14 111.5 11.8 51 424-474 230-287 (290)
283 PRK07560 elongation factor EF- 99.0 2.5E-09 5.4E-14 122.9 15.6 113 313-437 21-152 (731)
284 PF09439 SRPRB: Signal recogni 99.0 4.3E-10 9.3E-15 107.6 7.7 118 313-439 4-127 (181)
285 PLN00116 translation elongatio 99.0 1.2E-09 2.7E-14 127.0 12.7 114 312-437 19-163 (843)
286 KOG1144 Translation initiation 99.0 2.6E-09 5.6E-14 117.6 13.9 158 309-479 472-690 (1064)
287 PTZ00416 elongation factor 2; 99.0 1.4E-09 3E-14 126.4 12.2 113 313-437 20-157 (836)
288 KOG0077 Vesicle coat complex C 99.0 1.4E-09 3E-14 101.1 9.6 148 314-473 22-190 (193)
289 COG3276 SelB Selenocysteine-sp 99.0 2.1E-09 4.5E-14 113.6 11.6 151 314-476 2-162 (447)
290 KOG0071 GTP-binding ADP-ribosy 99.0 7.5E-09 1.6E-13 93.8 12.9 150 314-476 19-178 (180)
291 TIGR00490 aEF-2 translation el 98.9 3.3E-09 7.1E-14 121.6 11.7 115 312-438 19-152 (720)
292 KOG0393 Ras-related small GTPa 98.9 2E-09 4.3E-14 103.9 8.1 151 314-475 6-178 (198)
293 KOG0461 Selenocysteine-specifi 98.9 8.1E-09 1.7E-13 105.7 12.6 154 313-478 8-195 (522)
294 PF03029 ATP_bind_1: Conserved 98.9 3.5E-09 7.5E-14 105.9 8.5 113 361-475 92-236 (238)
295 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 1.3E-08 2.8E-13 101.3 12.4 158 314-476 1-176 (232)
296 PF05049 IIGP: Interferon-indu 98.9 2.9E-08 6.3E-13 104.8 15.3 177 282-479 17-221 (376)
297 COG1703 ArgK Putative periplas 98.9 1.4E-08 3E-13 103.0 12.2 101 359-478 143-256 (323)
298 KOG0074 GTP-binding ADP-ribosy 98.9 6.6E-09 1.4E-13 94.3 8.6 152 314-476 19-179 (185)
299 KOG0090 Signal recognition par 98.9 2.2E-08 4.8E-13 96.8 12.4 150 313-475 39-238 (238)
300 KOG3883 Ras family small GTPas 98.9 5.2E-08 1.1E-12 89.6 13.8 160 313-479 10-178 (198)
301 TIGR00101 ureG urease accessor 98.9 1.8E-08 4E-13 98.0 11.8 98 360-476 92-196 (199)
302 KOG0458 Elongation factor 1 al 98.9 8.3E-09 1.8E-13 111.9 10.1 144 312-466 177-372 (603)
303 PF03308 ArgK: ArgK protein; 98.9 3.1E-09 6.8E-14 106.2 6.3 100 359-477 121-231 (266)
304 KOG2486 Predicted GTPase [Gene 98.9 7.9E-09 1.7E-13 103.5 9.1 156 312-473 136-313 (320)
305 COG2895 CysN GTPases - Sulfate 98.9 1.1E-08 2.4E-13 105.3 10.1 141 313-465 7-192 (431)
306 TIGR00092 GTP-binding protein 98.8 1.5E-08 3.2E-13 106.9 10.5 88 314-402 4-108 (368)
307 TIGR00993 3a0901s04IAP86 chlor 98.8 4.4E-08 9.4E-13 108.8 14.6 125 313-438 119-250 (763)
308 KOG1487 GTP-binding protein DR 98.8 2.6E-09 5.7E-14 105.7 4.4 166 313-482 60-287 (358)
309 KOG0072 GTP-binding ADP-ribosy 98.8 1.9E-08 4.1E-13 91.6 8.7 152 314-477 20-180 (182)
310 COG0050 TufB GTPases - transla 98.8 4E-08 8.7E-13 99.0 11.6 154 311-478 11-203 (394)
311 COG4108 PrfC Peptide chain rel 98.7 5.5E-08 1.2E-12 102.6 10.6 150 314-500 14-184 (528)
312 KOG1491 Predicted GTP-binding 98.7 2.4E-08 5.1E-13 102.5 7.5 89 312-403 20-126 (391)
313 KOG1707 Predicted Ras related/ 98.7 3.7E-08 8.1E-13 106.9 8.9 150 313-476 10-175 (625)
314 COG0378 HypB Ni2+-binding GTPa 98.7 4.2E-08 9.1E-13 94.1 7.5 50 426-475 144-200 (202)
315 KOG0096 GTPase Ran/TC4/GSP1 (n 98.7 4.2E-08 9.1E-13 93.2 7.0 157 312-479 10-172 (216)
316 PF00735 Septin: Septin; Inte 98.6 2.6E-07 5.7E-12 94.6 12.5 124 313-441 5-159 (281)
317 cd01859 MJ1464 MJ1464. This f 98.6 3.6E-07 7.8E-12 84.7 12.0 90 384-477 4-97 (156)
318 KOG0465 Mitochondrial elongati 98.6 2.5E-07 5.3E-12 100.9 10.1 186 313-535 40-244 (721)
319 cd04178 Nucleostemin_like Nucl 98.5 2.3E-07 5.1E-12 88.3 7.9 54 312-370 117-172 (172)
320 KOG0468 U5 snRNP-specific prot 98.5 2.8E-07 6E-12 101.0 8.5 113 313-437 129-262 (971)
321 cd01856 YlqF YlqF. Proteins o 98.5 6.8E-07 1.5E-11 84.4 10.2 94 376-475 4-100 (171)
322 KOG1673 Ras GTPases [General f 98.5 1.2E-06 2.6E-11 80.9 10.3 156 313-479 21-189 (205)
323 cd01858 NGP_1 NGP-1. Autoanti 98.4 6.2E-07 1.3E-11 83.4 8.3 54 313-370 103-157 (157)
324 cd01851 GBP Guanylate-binding 98.4 1.8E-06 3.9E-11 85.6 11.2 89 310-404 5-104 (224)
325 cd01858 NGP_1 NGP-1. Autoanti 98.4 1E-06 2.2E-11 81.9 8.6 88 386-475 3-94 (157)
326 cd01855 YqeH YqeH. YqeH is an 98.4 9.7E-07 2.1E-11 84.6 8.5 113 382-500 24-150 (190)
327 TIGR03596 GTPase_YlqF ribosome 98.4 1.4E-06 3E-11 89.0 10.1 57 312-372 118-175 (276)
328 TIGR03348 VI_IcmF type VI secr 98.4 2.9E-06 6.2E-11 102.4 13.7 132 307-440 106-259 (1169)
329 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.2E-06 4.8E-11 88.0 10.6 56 312-372 121-178 (287)
330 TIGR00064 ftsY signal recognit 98.4 6.5E-06 1.4E-10 84.0 13.8 149 312-469 72-261 (272)
331 cd01849 YlqF_related_GTPase Yl 98.3 1.9E-06 4.2E-11 80.0 8.9 55 312-370 100-155 (155)
332 COG5258 GTPBP1 GTPase [General 98.3 5.3E-06 1.1E-10 86.6 12.4 151 313-476 118-338 (527)
333 cd01855 YqeH YqeH. YqeH is an 98.3 1.4E-06 3.1E-11 83.5 7.6 57 314-370 129-190 (190)
334 KOG0466 Translation initiation 98.3 9.4E-07 2E-11 89.6 6.5 104 361-478 126-243 (466)
335 cd03112 CobW_like The function 98.3 2E-06 4.2E-11 80.7 8.2 117 313-436 1-158 (158)
336 TIGR03596 GTPase_YlqF ribosome 98.3 3.4E-06 7.4E-11 86.1 10.5 97 375-477 5-104 (276)
337 PRK10416 signal recognition pa 98.3 9.4E-06 2E-10 84.7 13.9 148 313-469 115-303 (318)
338 cd01856 YlqF YlqF. Proteins o 98.3 2.6E-06 5.7E-11 80.4 8.9 55 312-370 115-170 (171)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.3E-06 2.8E-11 79.9 6.0 54 314-371 85-139 (141)
340 KOG0464 Elongation factor G [T 98.2 7.6E-07 1.6E-11 93.2 4.3 184 314-535 39-249 (753)
341 cd01849 YlqF_related_GTPase Yl 98.2 3.8E-06 8.2E-11 78.0 8.0 79 393-474 1-83 (155)
342 TIGR00157 ribosome small subun 98.2 5.9E-06 1.3E-10 83.0 9.9 83 388-473 33-120 (245)
343 PRK14974 cell division protein 98.2 1.1E-05 2.4E-10 84.7 12.2 101 359-469 222-323 (336)
344 COG1161 Predicted GTPases [Gen 98.2 4.1E-06 8.9E-11 87.5 8.4 56 313-372 133-189 (322)
345 KOG0460 Mitochondrial translat 98.2 9.2E-06 2E-10 83.7 10.6 155 312-477 54-246 (449)
346 KOG1954 Endocytosis/signaling 98.2 8.1E-06 1.8E-10 84.8 10.0 127 312-444 58-231 (532)
347 PF03193 DUF258: Protein of un 98.2 1.5E-06 3.3E-11 81.8 4.4 57 314-372 37-99 (161)
348 PRK09563 rbgA GTPase YlqF; Rev 98.2 8.1E-06 1.8E-10 83.8 9.8 97 375-477 8-107 (287)
349 TIGR00157 ribosome small subun 98.2 2.9E-06 6.3E-11 85.3 6.3 59 314-372 122-183 (245)
350 KOG3886 GTP-binding protein [S 98.2 3.4E-06 7.4E-11 82.8 6.4 123 314-440 6-132 (295)
351 KOG1424 Predicted GTP-binding 98.1 1E-05 2.2E-10 87.2 10.4 198 146-371 158-370 (562)
352 PRK12288 GTPase RsgA; Reviewed 98.1 4.4E-06 9.6E-11 88.1 7.6 57 314-372 207-269 (347)
353 KOG4423 GTP-binding protein-li 98.1 2.4E-07 5.3E-12 87.8 -2.0 155 312-476 25-194 (229)
354 COG5019 CDC3 Septin family pro 98.1 1.7E-05 3.6E-10 82.8 11.2 124 313-441 24-179 (373)
355 PRK12289 GTPase RsgA; Reviewed 98.1 6.3E-06 1.4E-10 87.0 8.1 84 389-474 87-173 (352)
356 KOG2655 Septin family protein 98.1 2.2E-05 4.8E-10 82.3 11.9 124 313-441 22-175 (366)
357 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.1E-05 2.4E-10 73.7 8.1 80 382-463 2-84 (141)
358 COG5192 BMS1 GTP-binding prote 98.1 2.5E-05 5.4E-10 84.6 11.5 128 313-461 70-211 (1077)
359 TIGR01425 SRP54_euk signal rec 98.1 5.6E-05 1.2E-09 81.6 14.2 145 313-467 101-281 (429)
360 PRK12289 GTPase RsgA; Reviewed 98.1 6.9E-06 1.5E-10 86.8 6.8 57 314-372 174-236 (352)
361 KOG0448 Mitofusin 1 GTPase, in 98.1 7.5E-05 1.6E-09 83.0 15.0 117 314-440 111-277 (749)
362 PRK00098 GTPase RsgA; Reviewed 98.0 1E-05 2.2E-10 83.6 7.4 82 389-472 78-163 (298)
363 KOG1707 Predicted Ras related/ 98.0 9.6E-05 2.1E-09 80.9 14.4 160 305-477 418-584 (625)
364 COG1162 Predicted GTPases [Gen 98.0 1.4E-05 3E-10 82.0 7.5 73 314-388 166-249 (301)
365 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.1E-05 2.5E-10 82.8 6.8 82 389-473 76-161 (287)
366 KOG0467 Translation elongation 98.0 1.6E-05 3.6E-10 88.8 8.3 114 311-436 8-136 (887)
367 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.7E-05 3.7E-10 81.5 7.8 59 314-372 163-225 (287)
368 PRK13796 GTPase YqeH; Provisio 98.0 9E-06 2E-10 86.4 5.8 59 314-372 162-222 (365)
369 KOG0463 GTP-binding protein GP 98.0 4.4E-05 9.6E-10 79.5 10.4 191 269-471 80-353 (641)
370 cd01859 MJ1464 MJ1464. This f 97.9 4.2E-05 9.2E-10 70.7 9.1 54 313-370 102-156 (156)
371 PRK00098 GTPase RsgA; Reviewed 97.9 2.5E-05 5.5E-10 80.7 8.2 56 314-371 166-227 (298)
372 PRK05703 flhF flagellar biosyn 97.9 0.00018 3.9E-09 78.0 14.5 146 313-467 222-400 (424)
373 PRK14721 flhF flagellar biosyn 97.9 6.5E-05 1.4E-09 81.0 10.9 146 313-468 192-370 (420)
374 PF00448 SRP54: SRP54-type pro 97.9 0.00016 3.4E-09 70.4 12.4 143 314-466 3-181 (196)
375 KOG1547 Septin CDC10 and relat 97.9 0.00012 2.5E-09 72.6 11.3 122 313-440 47-200 (336)
376 TIGR03597 GTPase_YqeH ribosome 97.9 1.5E-05 3.3E-10 84.5 5.6 59 314-372 156-216 (360)
377 COG3523 IcmF Type VI protein s 97.9 0.00012 2.6E-09 87.0 13.3 134 305-440 118-272 (1188)
378 KOG3905 Dynein light intermedi 97.9 0.00024 5.1E-09 73.1 13.7 55 424-478 222-292 (473)
379 PRK12724 flagellar biosynthesi 97.8 0.00056 1.2E-08 73.6 16.2 143 313-464 224-398 (432)
380 PRK13796 GTPase YqeH; Provisio 97.8 0.00025 5.4E-09 75.4 13.5 110 380-498 57-181 (365)
381 KOG2423 Nucleolar GTPase [Gene 97.8 9.8E-06 2.1E-10 84.8 2.1 137 207-371 195-363 (572)
382 PRK12288 GTPase RsgA; Reviewed 97.8 9.4E-05 2E-09 78.1 9.5 83 389-474 118-206 (347)
383 PRK14723 flhF flagellar biosyn 97.8 0.00013 2.8E-09 83.7 11.1 147 313-468 186-367 (767)
384 PRK14722 flhF flagellar biosyn 97.8 0.00013 2.9E-09 77.5 10.6 146 313-464 138-320 (374)
385 PRK12727 flagellar biosynthesi 97.8 0.0003 6.4E-09 77.6 13.3 141 313-464 351-523 (559)
386 COG0523 Putative GTPases (G3E 97.7 0.00022 4.8E-09 74.5 11.6 150 312-468 1-193 (323)
387 PRK00771 signal recognition pa 97.7 0.00032 6.9E-09 76.2 12.3 98 360-467 176-274 (437)
388 smart00010 small_GTPase Small 97.7 4.6E-05 1E-09 66.5 4.7 114 314-465 2-115 (124)
389 PRK12723 flagellar biosynthesi 97.7 0.00068 1.5E-08 72.6 14.0 149 313-470 175-358 (388)
390 PRK11889 flhF flagellar biosyn 97.7 0.00033 7.1E-09 74.8 11.2 142 313-464 242-416 (436)
391 TIGR00959 ffh signal recogniti 97.6 0.00035 7.6E-09 75.7 11.2 99 359-467 182-281 (428)
392 cd03115 SRP The signal recogni 97.6 0.00044 9.5E-09 65.1 10.6 74 359-440 82-155 (173)
393 COG1419 FlhF Flagellar GTP-bin 97.6 0.00036 7.9E-09 74.2 10.7 142 313-464 204-377 (407)
394 TIGR03597 GTPase_YqeH ribosome 97.6 0.00027 5.9E-09 75.0 9.6 91 380-476 51-153 (360)
395 PRK06995 flhF flagellar biosyn 97.6 0.00036 7.9E-09 76.5 10.6 146 313-468 257-435 (484)
396 cd03114 ArgK-like The function 97.6 0.00016 3.5E-09 67.1 6.7 20 315-334 2-21 (148)
397 PRK01889 GTPase RsgA; Reviewed 97.5 0.00034 7.5E-09 74.1 9.5 81 389-472 110-193 (356)
398 KOG0447 Dynamin-like GTP bindi 97.5 0.0019 4.2E-08 70.3 14.8 116 360-477 412-545 (980)
399 PRK11537 putative GTP-binding 97.5 0.00047 1E-08 72.0 9.3 124 311-441 3-167 (318)
400 COG1126 GlnQ ABC-type polar am 97.4 0.00075 1.6E-08 66.3 9.7 175 313-524 29-224 (240)
401 PRK10867 signal recognition pa 97.4 0.00071 1.5E-08 73.4 10.6 99 359-467 183-282 (433)
402 TIGR02475 CobW cobalamin biosy 97.4 0.00053 1.2E-08 72.3 9.3 25 311-335 3-27 (341)
403 PF05783 DLIC: Dynein light in 97.4 0.0019 4E-08 70.9 13.7 56 424-479 196-267 (472)
404 PF02492 cobW: CobW/HypB/UreG, 97.4 0.00029 6.2E-09 67.2 6.6 120 313-440 1-157 (178)
405 KOG1143 Predicted translation 97.4 0.0004 8.6E-09 72.6 7.7 146 314-471 169-383 (591)
406 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0019 4E-08 61.9 11.7 23 313-335 26-48 (177)
407 PRK12726 flagellar biosynthesi 97.4 0.0014 3E-08 69.8 11.4 145 312-466 206-383 (407)
408 cd03216 ABC_Carb_Monos_I This 97.3 0.0016 3.4E-08 61.2 10.2 24 313-336 27-50 (163)
409 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.002 4.3E-08 53.2 8.3 98 315-432 2-99 (99)
410 PRK06731 flhF flagellar biosyn 97.2 0.0065 1.4E-07 62.1 13.5 143 312-464 75-250 (270)
411 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0072 1.6E-07 55.6 12.7 22 314-335 28-49 (144)
412 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.00044 9.6E-09 69.7 4.9 22 314-335 32-53 (254)
413 PF00004 AAA: ATPase family as 97.1 0.0038 8.3E-08 55.0 10.1 21 315-335 1-21 (132)
414 COG0552 FtsY Signal recognitio 97.1 0.0074 1.6E-07 62.9 13.3 102 358-469 220-328 (340)
415 KOG2485 Conserved ATP/GTP bind 97.1 0.00081 1.8E-08 69.1 6.1 61 312-373 143-209 (335)
416 PRK01889 GTPase RsgA; Reviewed 97.1 0.0004 8.7E-09 73.6 4.1 24 314-337 197-220 (356)
417 COG3840 ThiQ ABC-type thiamine 97.1 0.00075 1.6E-08 64.8 5.4 24 314-337 27-50 (231)
418 COG1116 TauB ABC-type nitrate/ 97.1 0.00048 1E-08 68.9 4.2 23 314-336 31-53 (248)
419 KOG1533 Predicted GTPase [Gene 97.1 0.00051 1.1E-08 68.0 3.9 79 360-440 97-179 (290)
420 cd03229 ABC_Class3 This class 97.0 0.0072 1.6E-07 57.4 11.7 23 314-336 28-50 (178)
421 PF09547 Spore_IV_A: Stage IV 97.0 0.017 3.7E-07 62.0 15.3 173 314-487 19-246 (492)
422 PRK13695 putative NTPase; Prov 97.0 0.0086 1.9E-07 56.5 12.1 77 389-476 94-173 (174)
423 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0085 1.8E-07 56.6 11.9 23 314-336 28-50 (173)
424 KOG3859 Septins (P-loop GTPase 97.0 0.0021 4.6E-08 65.0 7.4 122 313-440 43-192 (406)
425 cd03111 CpaE_like This protein 96.9 0.0057 1.2E-07 53.3 8.8 101 315-433 2-106 (106)
426 KOG2484 GTPase [General functi 96.9 0.00083 1.8E-08 70.9 4.0 74 294-371 234-308 (435)
427 COG1120 FepC ABC-type cobalami 96.8 0.0011 2.4E-08 67.0 4.2 23 313-335 29-51 (258)
428 COG0411 LivG ABC-type branched 96.8 0.00042 9.2E-09 69.0 0.9 22 314-335 32-53 (250)
429 COG1135 AbcC ABC-type metal io 96.8 0.0049 1.1E-07 63.5 8.6 38 314-363 34-71 (339)
430 KOG1534 Putative transcription 96.8 0.0034 7.3E-08 61.4 6.9 116 360-478 98-223 (273)
431 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.012 2.5E-07 54.6 10.3 23 313-335 26-48 (157)
432 COG0410 LivF ABC-type branched 96.7 0.0016 3.6E-08 64.4 4.6 22 314-335 31-52 (237)
433 cd00009 AAA The AAA+ (ATPases 96.7 0.01 2.2E-07 52.2 9.3 23 313-335 20-42 (151)
434 PF00005 ABC_tran: ABC transpo 96.7 0.0014 2.9E-08 59.0 3.7 22 314-335 13-34 (137)
435 cd03261 ABC_Org_Solvent_Resist 96.7 0.0019 4.1E-08 64.0 5.0 22 314-335 28-49 (235)
436 COG1136 SalX ABC-type antimicr 96.7 0.0018 3.9E-08 64.3 4.6 23 314-336 33-55 (226)
437 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0019 4.1E-08 63.0 4.8 23 314-336 32-54 (218)
438 TIGR00960 3a0501s02 Type II (G 96.7 0.002 4.2E-08 62.9 4.8 23 313-335 30-52 (216)
439 KOG2743 Cobalamin synthesis pr 96.7 0.0036 7.9E-08 64.0 6.6 130 309-441 54-228 (391)
440 TIGR01166 cbiO cobalt transpor 96.7 0.0022 4.8E-08 61.3 4.9 22 314-335 20-41 (190)
441 KOG0469 Elongation factor 2 [T 96.7 0.0026 5.5E-08 68.8 5.6 113 313-437 20-163 (842)
442 KOG0781 Signal recognition par 96.7 0.0087 1.9E-07 64.7 9.6 98 358-457 465-565 (587)
443 cd03246 ABCC_Protease_Secretio 96.7 0.022 4.7E-07 53.8 11.5 23 314-336 30-52 (173)
444 cd03213 ABCG_EPDR ABCG transpo 96.7 0.021 4.6E-07 55.0 11.6 23 314-336 37-59 (194)
445 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0022 4.8E-08 62.3 4.8 22 314-335 29-50 (211)
446 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0023 5E-08 62.0 4.8 22 314-335 28-49 (205)
447 cd03223 ABCD_peroxisomal_ALDP 96.6 0.029 6.4E-07 52.7 12.2 23 314-336 29-51 (166)
448 COG3839 MalK ABC-type sugar tr 96.6 0.0019 4.1E-08 67.8 4.3 42 314-355 31-78 (338)
449 cd03259 ABC_Carb_Solutes_like 96.6 0.0028 6E-08 61.7 4.9 22 314-335 28-49 (213)
450 cd03265 ABC_DrrA DrrA is the A 96.6 0.0028 6E-08 62.1 4.9 23 313-335 27-49 (220)
451 COG1122 CbiO ABC-type cobalt t 96.6 0.0046 9.9E-08 62.0 6.4 23 314-336 32-54 (235)
452 TIGR03608 L_ocin_972_ABC putat 96.6 0.003 6.5E-08 61.0 5.0 22 314-335 26-47 (206)
453 COG4559 ABC-type hemin transpo 96.6 0.002 4.2E-08 63.3 3.6 24 313-336 28-51 (259)
454 PRK11629 lolD lipoprotein tran 96.6 0.0029 6.3E-08 62.6 5.0 22 314-335 37-58 (233)
455 TIGR02673 FtsE cell division A 96.6 0.0029 6.2E-08 61.6 4.8 22 314-335 30-51 (214)
456 cd03292 ABC_FtsE_transporter F 96.5 0.0031 6.7E-08 61.3 5.0 22 314-335 29-50 (214)
457 cd03258 ABC_MetN_methionine_tr 96.5 0.0028 6E-08 62.6 4.8 23 314-336 33-55 (233)
458 cd03263 ABC_subfamily_A The AB 96.5 0.0028 6.2E-08 61.9 4.8 23 314-336 30-52 (220)
459 cd03269 ABC_putative_ATPase Th 96.5 0.0027 5.9E-08 61.7 4.5 22 314-335 28-49 (210)
460 cd03224 ABC_TM1139_LivF_branch 96.5 0.0029 6.3E-08 61.8 4.7 23 314-336 28-50 (222)
461 TIGR02211 LolD_lipo_ex lipopro 96.5 0.003 6.5E-08 61.8 4.7 23 314-336 33-55 (221)
462 cd00066 G-alpha G protein alph 96.5 0.0065 1.4E-07 63.4 7.5 111 352-477 154-277 (317)
463 cd03264 ABC_drug_resistance_li 96.5 0.0026 5.6E-08 61.9 4.2 22 314-335 27-48 (211)
464 COG4152 ABC-type uncharacteriz 96.5 0.0017 3.7E-08 64.9 2.9 45 314-370 30-76 (300)
465 cd03257 ABC_NikE_OppD_transpor 96.5 0.003 6.5E-08 62.0 4.7 23 314-336 33-55 (228)
466 COG1101 PhnK ABC-type uncharac 96.5 0.0027 5.8E-08 62.5 4.2 36 314-361 34-69 (263)
467 TIGR02315 ABC_phnC phosphonate 96.5 0.003 6.6E-08 62.7 4.8 22 314-335 30-51 (243)
468 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0033 7.2E-08 61.6 4.9 22 314-335 32-53 (220)
469 COG1134 TagH ABC-type polysacc 96.5 0.0043 9.3E-08 62.0 5.7 50 313-374 54-104 (249)
470 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0031 6.6E-08 61.3 4.6 23 314-336 28-50 (213)
471 cd03266 ABC_NatA_sodium_export 96.5 0.0033 7.1E-08 61.4 4.8 22 314-335 33-54 (218)
472 COG3845 ABC-type uncharacteriz 96.5 0.005 1.1E-07 66.8 6.5 38 314-363 32-69 (501)
473 cd04178 Nucleostemin_like Nucl 96.5 0.0035 7.6E-08 59.7 4.8 46 393-440 1-46 (172)
474 TIGR01189 ccmA heme ABC export 96.5 0.0036 7.8E-08 60.4 5.0 24 313-336 27-50 (198)
475 cd03218 ABC_YhbG The ABC trans 96.5 0.0033 7.2E-08 61.9 4.8 23 314-336 28-50 (232)
476 cd03256 ABC_PhnC_transporter A 96.5 0.0033 7.2E-08 62.2 4.8 23 314-336 29-51 (241)
477 TIGR01188 drrA daunorubicin re 96.5 0.0034 7.5E-08 64.8 5.0 23 314-336 21-43 (302)
478 cd03219 ABC_Mj1267_LivG_branch 96.4 0.0034 7.3E-08 62.0 4.7 22 314-335 28-49 (236)
479 PRK10584 putative ABC transpor 96.4 0.0036 7.9E-08 61.6 4.9 24 313-336 37-60 (228)
480 COG1162 Predicted GTPases [Gen 96.4 0.0078 1.7E-07 62.1 7.3 84 390-475 78-166 (301)
481 PRK10908 cell division protein 96.4 0.0041 8.8E-08 61.0 5.2 23 313-335 29-51 (222)
482 PRK11248 tauB taurine transpor 96.4 0.0034 7.4E-08 63.3 4.7 23 314-336 29-51 (255)
483 cd03296 ABC_CysA_sulfate_impor 96.4 0.0038 8.3E-08 62.0 4.9 23 314-336 30-52 (239)
484 TIGR03864 PQQ_ABC_ATP ABC tran 96.4 0.0042 9E-08 61.6 5.1 23 314-336 29-51 (236)
485 smart00275 G_alpha G protein a 96.4 0.013 2.7E-07 62.0 8.9 111 352-477 177-299 (342)
486 PRK13541 cytochrome c biogenes 96.4 0.0036 7.8E-08 60.3 4.5 23 314-336 28-50 (195)
487 cd03301 ABC_MalK_N The N-termi 96.4 0.0041 8.9E-08 60.4 4.9 23 314-336 28-50 (213)
488 COG3640 CooC CO dehydrogenase 96.4 0.0061 1.3E-07 60.6 6.0 45 390-437 154-198 (255)
489 cd03215 ABC_Carb_Monos_II This 96.4 0.0041 8.8E-08 59.3 4.7 23 314-336 28-50 (182)
490 PRK15056 manganese/iron transp 96.4 0.004 8.6E-08 63.3 4.8 23 313-335 34-56 (272)
491 PRK13538 cytochrome c biogenes 96.4 0.0042 9.1E-08 60.2 4.8 24 313-336 28-51 (204)
492 PF06858 NOG1: Nucleolar GTP-b 96.4 0.0085 1.8E-07 46.8 5.4 42 392-435 14-58 (58)
493 PRK11124 artP arginine transpo 96.4 0.0045 9.8E-08 61.5 5.0 23 313-335 29-51 (242)
494 PRK13646 cbiO cobalt transport 96.4 0.0039 8.4E-08 63.9 4.7 22 314-335 35-56 (286)
495 cd03260 ABC_PstB_phosphate_tra 96.4 0.0039 8.5E-08 61.3 4.5 24 313-336 27-50 (227)
496 PRK13540 cytochrome c biogenes 96.4 0.0041 9E-08 60.1 4.6 24 313-336 28-51 (200)
497 cd03268 ABC_BcrA_bacitracin_re 96.4 0.0043 9.3E-08 60.2 4.7 22 314-335 28-49 (208)
498 cd03235 ABC_Metallic_Cations A 96.3 0.0033 7.3E-08 61.2 3.9 22 314-335 27-48 (213)
499 COG1131 CcmA ABC-type multidru 96.3 0.0042 9E-08 64.2 4.8 22 314-335 33-54 (293)
500 PRK13638 cbiO cobalt transport 96.3 0.0042 9.1E-08 63.0 4.8 22 314-335 29-50 (271)
No 1
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=1.3e-86 Score=685.86 Aligned_cols=398 Identities=48% Similarity=0.726 Sum_probs=373.6
Q ss_pred cceEEEEEEEeCCCcccccchhhhHHHHHHHHHHcCCeEEEEEEEeccCCCCCcccccchHHHHHHHHHHhCCcEEEeCC
Q 009371 126 QEKSYLVGVERKGGAEYLFVIEESLKELAQLADTAGLMVVGSTHQKLNSPNPRTYIGSGKVAEIKSAIHALGVETVIFDD 205 (536)
Q Consensus 126 ~~~~~lv~~~~~~~~~~~~~~~~~l~El~~L~~~~g~~vv~~~~~~~~~~~~~~~~g~Gk~~e~~~~~~~~~~~~vi~~~ 205 (536)
.+|+++|++..... +.+++|+||.+||+|||++|++.++|++..|||+||||+||++||++.++..++|+||||+
T Consensus 3 ~~r~~~v~v~~~~~-----~~~~~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~ 77 (411)
T COG2262 3 GERALLVGVSKDQD-----DFEESLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDH 77 (411)
T ss_pred ccceEEEEeccccc-----cchhhHHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcchHHHHHHHHHhcCCCEEEECC
Confidence 57899999987543 4588999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCceeeccchhhhhhhhhccccchhhcc---------cchhhccchhhhhhcCC-cccCCCcchh
Q 009371 206 ELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAALQ---------LPRLTKMWTHLERQAGG-QVKGMGEKQI 275 (536)
Q Consensus 206 ~Lsp~Q~~nle~~~~~~~~V~DR~~lil~IF~~rA~t~eakLq---------l~rL~~~~~~l~r~~gg-~~~g~GE~~l 275 (536)
+|||+|.+|||++++ |+|||||+||||||++||+|+||||| +|||.+.|.++++.+|| +++||||+++
T Consensus 78 ~LsP~Q~~NLe~~l~--~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~l 155 (411)
T COG2262 78 ELSPSQLRNLEKELG--VKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQL 155 (411)
T ss_pred cCCHHHHHHHHHHHC--CEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHH
Confidence 999999999999997 99999999999999999999999997 59999999999977766 5999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEE
Q 009371 276 EVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQ 355 (536)
Q Consensus 276 e~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~ 355 (536)
|.|||+|+.||.+|+++|+.++++|...|..|.+.++|.|+++||||||||||+|+|++..+.+.+++|+|++||++.+.
T Consensus 156 E~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~ 235 (411)
T COG2262 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIE 235 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 356 MKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 356 l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
+++|..+++.||+||++++|+.++++|++|+++...||+++||+|+|+|...++.+.+..+|.++++.++|+|+|+||+|
T Consensus 236 l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD 315 (411)
T COG2262 236 LGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKID 315 (411)
T ss_pred eCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEccCceEE
Q 009371 436 KVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTENGTLV 515 (536)
Q Consensus 436 l~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~~g~~~ 515 (536)
++.+...........++.+++||++|.|++.|++.|.+.+........+.+|+..+..++|+|+.+.+.+.+|.++ ..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~~~~~~~l~~~~~v~~~~~~e~-~~i 394 (411)
T COG2262 316 LLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTDAGRLSWLHDNGIVLEEEYGED-VRI 394 (411)
T ss_pred ccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCcccccHHHHHHhcceeeecccCCc-eEE
Confidence 8876653333222223699999999999999999999999988888889999998889999999999999999988 999
Q ss_pred EEEcCHHHHHHHHHHH
Q 009371 516 KAHVPLRFARLLTPMR 531 (536)
Q Consensus 516 ~~~lp~~~~~~~~~~~ 531 (536)
.+++++....++..|.
T Consensus 395 ~~~~~~~~~~~~~~~~ 410 (411)
T COG2262 395 KAEAPERLAKRLQEFA 410 (411)
T ss_pred EEEECHHHHHhhhhhc
Confidence 9999999988887763
No 2
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=2.8e-76 Score=631.13 Aligned_cols=401 Identities=42% Similarity=0.627 Sum_probs=358.5
Q ss_pred cceEEEEEEEeCCCcccccchhhhHHHHHHHHHHcCCeEEEEEEEeccCCCCCcccccchHHHHHHHHHHhCCcEEEeCC
Q 009371 126 QEKSYLVGVERKGGAEYLFVIEESLKELAQLADTAGLMVVGSTHQKLNSPNPRTYIGSGKVAEIKSAIHALGVETVIFDD 205 (536)
Q Consensus 126 ~~~~~lv~~~~~~~~~~~~~~~~~l~El~~L~~~~g~~vv~~~~~~~~~~~~~~~~g~Gk~~e~~~~~~~~~~~~vi~~~ 205 (536)
.+||+|||+..+.. ..+++|+||++||+|||++||++++|++++|||+||||+||++||++++++.++|+||||+
T Consensus 8 ~~~~~l~~~~~~~~-----~~~~~~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~ 82 (426)
T PRK11058 8 GEQAVLVHIYFSQD-----KDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDH 82 (426)
T ss_pred CceEEEEEecCCCC-----chhhhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECC
Confidence 37999999975432 2467999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCceeeccchhhhhhhhhccccchhhcc---------cchhhccchhhhhhcCCc-ccCCCcchh
Q 009371 206 ELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAALQ---------LPRLTKMWTHLERQAGGQ-VKGMGEKQI 275 (536)
Q Consensus 206 ~Lsp~Q~~nle~~~~~~~~V~DR~~lil~IF~~rA~t~eakLq---------l~rL~~~~~~l~r~~gg~-~~g~GE~~l 275 (536)
+|||+|+||||++|+ ++|+|||.|||+||++||+|+||||| +|||.++|.+++|++||. ++|+||+++
T Consensus 83 ~lsp~q~~nle~~~~--~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~ 160 (426)
T PRK11058 83 ALSPAQERNLERLCE--CRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL 160 (426)
T ss_pred CCCHHHHHHHHHHHC--CeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChhHh
Confidence 999999999999996 99999999999999999999999997 589999999999998875 899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEE
Q 009371 276 EVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQ 355 (536)
Q Consensus 276 e~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~ 355 (536)
|.|++.++.+|..++++|+.+...|...+..|...+.|+|+|+|+||||||||+|+|++.++.+.+.+|+|++++++.+.
T Consensus 161 e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~ 240 (426)
T PRK11058 161 ETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID 240 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEE
Confidence 99999999999999999999998888777777777789999999999999999999999988888999999999999998
Q ss_pred EeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 356 MKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 356 l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
++++..+.+|||||+++..|+.+.+.|..++.++..||++++|+|++++....+...+..++..++..++|+++|+||+|
T Consensus 241 l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiD 320 (426)
T PRK11058 241 VADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKID 320 (426)
T ss_pred eCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEccc
Confidence 86656899999999988889988899999999999999999999999988777777778888888777899999999999
Q ss_pred CCCChhHHHHHhccCCC-EEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEccCc-e
Q 009371 436 KVCDPQKVKLEAQKRED-VVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTENG-T 513 (536)
Q Consensus 436 l~~~~~~~~~~~~~~~~-~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~~g-~ 513 (536)
+...............+ ++++||++|.|+++|+++|.+.+..........+|+..+++.+++|..+.+....|.++| .
T Consensus 321 L~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~~ 400 (426)
T PRK11058 321 MLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEEDGSV 400 (426)
T ss_pred CCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhccEEEEEEEChhhhhHHHHHHhcCceeEEEEcCCCEE
Confidence 97542211111112233 589999999999999999999998777788888999999999999999999999999998 5
Q ss_pred EEEEEcCHHHHHHHHHHHHh
Q 009371 514 LVKAHVPLRFARLLTPMRQM 533 (536)
Q Consensus 514 ~~~~~lp~~~~~~~~~~~~~ 533 (536)
.+++++|+....++......
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~ 420 (426)
T PRK11058 401 SLQVRMPIVDWRRLCKQEPA 420 (426)
T ss_pred EEEEEECHHHHHHHHHHHHH
Confidence 79999999888888765433
No 3
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=1.5e-70 Score=574.45 Aligned_cols=340 Identities=57% Similarity=0.852 Sum_probs=306.9
Q ss_pred eEEEEEEEeCCCcccccchhhhHHHHHHHHHHcCCeEEEEEEEeccCCCCCcccccchHHHHHHHHHHhCCcEEEeCCCC
Q 009371 128 KSYLVGVERKGGAEYLFVIEESLKELAQLADTAGLMVVGSTHQKLNSPNPRTYIGSGKVAEIKSAIHALGVETVIFDDEL 207 (536)
Q Consensus 128 ~~~lv~~~~~~~~~~~~~~~~~l~El~~L~~~~g~~vv~~~~~~~~~~~~~~~~g~Gk~~e~~~~~~~~~~~~vi~~~~L 207 (536)
||+|||+..+... ..+++|+||++||+|||++||++++|++++|||+||||+||++||++++++.++|+||||++|
T Consensus 1 ~~~~~~~~~~~~~----~~~~~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l 76 (351)
T TIGR03156 1 RAILVGVDLPEED----DEEESLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHEL 76 (351)
T ss_pred CEEEEEEecCCCc----chhhhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCC
Confidence 6899999765321 235899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCceeeccchhhhhhhhhccccchhhcc---------cchhhccchhhhhhcCCc-ccCCCcchhhh
Q 009371 208 SAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAALQ---------LPRLTKMWTHLERQAGGQ-VKGMGEKQIEV 277 (536)
Q Consensus 208 sp~Q~~nle~~~~~~~~V~DR~~lil~IF~~rA~t~eakLq---------l~rL~~~~~~l~r~~gg~-~~g~GE~~le~ 277 (536)
||+|.||||++|+ ++|+|||+|||+||++||+|+||||| +||+.+.|.+++++.||. ++||||++++.
T Consensus 77 ~p~q~~nl~~~~~--~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~ 154 (351)
T TIGR03156 77 SPSQERNLEKALG--CRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLET 154 (351)
T ss_pred CHHHHHHHHHHhC--CcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHH
Confidence 9999999999996 99999999999999999999999997 589999999999998875 89999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe
Q 009371 278 DKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK 357 (536)
Q Consensus 278 drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~ 357 (536)
|++.++++|..++++|+++.++|...+..|...+.++|+++|+||||||||+|+|++..+.+.+.+|+|++++++.+.++
T Consensus 155 ~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~ 234 (351)
T TIGR03156 155 DRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP 234 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC
Confidence 99999999999999999999999988888877777899999999999999999999988777888999999999999987
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
++.++.+|||||+++..|+.+.+.|.++++++..||++++|+|++++....+...+..++..++..++|+++|+||+|+.
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 78899999999999888999989999999999999999999999998877777777788888877789999999999997
Q ss_pred CChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHH
Q 009371 438 CDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 438 ~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
+.... ........+++++||++|.|+++|+++|.+.
T Consensus 315 ~~~~v-~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 315 DEPRI-ERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ChHhH-HHHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 64322 1111223568999999999999999999764
No 4
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=100.00 E-value=2e-58 Score=460.72 Aligned_cols=373 Identities=43% Similarity=0.552 Sum_probs=321.8
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEEEEeccCCCCCcccccchHHHHHHHHHHhCCcEEEeCCCCC--HHHHHHHHHHhCCC
Q 009371 145 VIEESLKELAQLADTAGLMVVGSTHQKLNSPNPRTYIGSGKVAEIKSAIHALGVETVIFDDELS--AGQLRNLEKAFGGD 222 (536)
Q Consensus 145 ~~~~~l~El~~L~~~~g~~vv~~~~~~~~~~~~~~~~g~Gk~~e~~~~~~~~~~~~vi~~~~Ls--p~Q~~nle~~~~~~ 222 (536)
..+.+++|+.+|++|++.-.+...+++.-.+++++|||+|++++|...+.+.++. ++|++..+ ++|.++++..| +
T Consensus 3 ~ae~qleea~aLvdtl~~~nvv~t~~kpv~~~rk~~~gsGn~e~Li~~i~aa~at-~~f~nv~a~~a~~~~ek~r~~--~ 79 (410)
T KOG0410|consen 3 NAEVQLEEANALVDTLQQRNVVRTWAKPVLDNRKTYIGSGNVEELIIEIFAAHAT-TKFANVQAELAALMYEKSRLV--R 79 (410)
T ss_pred hHHHHHHHHHHHHHhhccchhhhheeeeccCCcceeeecCcHHHHHHHHhcCccc-eeeecccccchhHHHHHhhhc--c
Confidence 4588999999999999666666667777888999999999999999999999955 45555555 45555555555 5
Q ss_pred ceeeccchhhhhhhhhccccchhhcc---------cchhhccchhhhhhcCCcccCCCcchhhhhH-HHHHHHHHHHHHH
Q 009371 223 VRVCDRTALILDIFNQRAATHEAALQ---------LPRLTKMWTHLERQAGGQVKGMGEKQIEVDK-RILRTQIGVLKKE 292 (536)
Q Consensus 223 ~~V~DR~~lil~IF~~rA~t~eakLq---------l~rL~~~~~~l~r~~gg~~~g~GE~~le~dr-r~i~~ri~~Lk~e 292 (536)
|+|+||+.+||+||.++|+|+||++| .+||.++|.|+.|+.||..+|.||.+++.|. |.++.++++++++
T Consensus 80 VrvfDr~~~vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~gsges~id~d~~rllr~kea~lrKe 159 (410)
T KOG0410|consen 80 VRVFDRRHTVLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVKGSGESIIDRDIRRLLRIKEAQLRKE 159 (410)
T ss_pred eeeecchhhHHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCcccCccchHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 3689999999999999999999999999987 7889999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccc
Q 009371 293 LESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 293 L~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~ 372 (536)
|+.++++| .+|..+...+.|+|++|||||||||||+++|++......+++|+|+|+|.+...+++|..+++.||+||++
T Consensus 160 L~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis 238 (410)
T KOG0410|consen 160 LQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS 238 (410)
T ss_pred HHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhh
Confidence 99999988 66667777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC----EEEEEEcCCCCCChhHHHHHhc
Q 009371 373 KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP----KLMIWNKVDKVCDPQKVKLEAQ 448 (536)
Q Consensus 373 ~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p----iIvVlNKiDl~~~~~~~~~~~~ 448 (536)
++|..++.+|++|++++..+|+++||+|+|+|..+++.+.+..+|+.++....| +|-|.||+|..+..... .
T Consensus 239 dLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~----E 314 (410)
T KOG0410|consen 239 DLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE----E 314 (410)
T ss_pred hCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc----c
Confidence 999999999999999999999999999999999999999999999999986554 67788999976532111 1
Q ss_pred cCCCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhH-HHHHHHHhc-eEEEEEEccCceEEEEEcCHHHHHH
Q 009371 449 KREDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGE-LLSTIHQVG-MVERTEYTENGTLVKAHVPLRFARL 526 (536)
Q Consensus 449 ~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~-l~~~i~~~~-~v~~~~y~~~g~~~~~~lp~~~~~~ 526 (536)
....+++||++|.|++++++++...+...+.+....++.+.++ ...|++... .++...|.++|+.+...++-+..+.
T Consensus 315 -~n~~v~isaltgdgl~el~~a~~~kv~~~t~~~e~~Lr~d~gd~~~~wly~e~~vvk~~~i~eng~~l~~~vi~~~Sel 393 (410)
T KOG0410|consen 315 -KNLDVGISALTGDGLEELLKAEETKVASETTVDEDQLRNDDGDDADGWLYSEDEVVKVDAINENGKKLKSPVIVERSEL 393 (410)
T ss_pred -cCCccccccccCccHHHHHHHHHHHhhhhheeeeEEeecCCCccchhheeecceEEEeeccCCCCceEecceeecHHhh
Confidence 1127899999999999999999999999998888889987665 566777664 4455677888977877766554433
No 5
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=99.97 E-value=7.6e-32 Score=229.86 Aligned_cols=93 Identities=59% Similarity=0.869 Sum_probs=90.3
Q ss_pred ccchhhhHHHHHHHHHHcCCeEEEEEEEeccCCCCCcccccchHHHHHHHHHHhCCcEEEeCCCCCHHHHHHHHHHhCCC
Q 009371 143 LFVIEESLKELAQLADTAGLMVVGSTHQKLNSPNPRTYIGSGKVAEIKSAIHALGVETVIFDDELSAGQLRNLEKAFGGD 222 (536)
Q Consensus 143 ~~~~~~~l~El~~L~~~~g~~vv~~~~~~~~~~~~~~~~g~Gk~~e~~~~~~~~~~~~vi~~~~Lsp~Q~~nle~~~~~~ 222 (536)
+++.+++|+||++||+|||++|+++++|++++|||+||||+||++||++++++.++|+||||++|||+|+||||++|+
T Consensus 3 ~~~~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~-- 80 (95)
T PF13167_consen 3 DYDFEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG-- 80 (95)
T ss_pred cccHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC--
Confidence 356799999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ceeeccchhhhhhhh
Q 009371 223 VRVCDRTALILDIFN 237 (536)
Q Consensus 223 ~~V~DR~~lil~IF~ 237 (536)
++|+|||.|||+|||
T Consensus 81 ~~V~DRt~LIL~IFA 95 (95)
T PF13167_consen 81 VKVIDRTQLILEIFA 95 (95)
T ss_pred CeeeccccHHHHHcC
Confidence 999999999999997
No 6
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.96 E-value=5.3e-28 Score=233.50 Aligned_cols=204 Identities=55% Similarity=0.821 Sum_probs=169.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCee
Q 009371 272 EKQIEVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTT 351 (536)
Q Consensus 272 E~~le~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~tt 351 (536)
|+++|.|.+.++++++.++++++.+.+.|...+..+...+.+.|+|+|++|||||||+|+|++..+...+.++.|.++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~ 80 (204)
T cd01878 1 ETQLETDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT 80 (204)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee
Confidence 57899999999999999999999999998888877766777899999999999999999999987666677788888888
Q ss_pred EEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEE
Q 009371 352 RRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIW 431 (536)
Q Consensus 352 r~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVl 431 (536)
..+.+.++..+.+|||||+.+..+......+..++..+..+|++++|+|++++....+...+...+..++..++|+++|+
T Consensus 81 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~ 160 (204)
T cd01878 81 RRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVL 160 (204)
T ss_pred EEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEE
Confidence 87777555589999999997766665556677777777889999999999988776666666777777776679999999
Q ss_pred EcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHh
Q 009371 432 NKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 432 NKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
||+|+...............+++++||++|.|+++++++|...+
T Consensus 161 NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 161 NKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 99999765443322333456899999999999999999997654
No 7
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=1.3e-24 Score=235.15 Aligned_cols=243 Identities=25% Similarity=0.294 Sum_probs=182.5
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCceeeccchhhhhhhhhccccchhhc--------ccchhhccchh-hhhhcCCc---cc
Q 009371 201 VIFDDELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAAL--------QLPRLTKMWTH-LERQAGGQ---VK 268 (536)
Q Consensus 201 vi~~~~Lsp~Q~~nle~~~~~~~~V~DR~~lil~IF~~rA~t~eakL--------ql~rL~~~~~~-l~r~~gg~---~~ 268 (536)
.+.|+.|.-.|...+.+.. +|.|..+.= +++++.+.|.. +.+..+.. +.
T Consensus 114 Aflngk~dL~qaEai~~li-------------------~a~t~~~~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iD 174 (449)
T PRK05291 114 AFLNGKLDLTQAEAIADLI-------------------DAKTEAAARLALRQLQGALSKLINELREELLELLALVEAAID 174 (449)
T ss_pred HHhcCCcCHHHHHHHHHHH-------------------hCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEcc
Confidence 3778899999998888876 344444221 25666666654 44444321 34
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCcc-cccccccccc
Q 009371 269 GMGEKQIEVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATL 347 (536)
Q Consensus 269 g~GE~~le~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tl 347 (536)
.++|...+.+++.++.++..++++|+++.+.+...+..+. .++|+++|++|||||||+|+|++.+. .+.+.+++|.
T Consensus 175 f~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~---~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~ 251 (449)
T PRK05291 175 FPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILRE---GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTR 251 (449)
T ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccc
Confidence 5566666889999999999999999999887765544432 25799999999999999999999765 3567788888
Q ss_pred CCeeEEEEEeCCeeEEEeecccccccchhhHH--HHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCC
Q 009371 348 DPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLV--AAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSI 425 (536)
Q Consensus 348 d~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~--e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~ 425 (536)
+.....+.+ +|.++.+|||||+.+ +.... ..+..++..+..+|++++|+|++++.+.++...+.. ..++
T Consensus 252 d~~~~~i~~-~g~~i~l~DT~G~~~--~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~ 322 (449)
T PRK05291 252 DVIEEHINL-DGIPLRLIDTAGIRE--TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDK 322 (449)
T ss_pred ccEEEEEEE-CCeEEEEEeCCCCCC--CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCC
Confidence 887777777 788999999999854 33333 335678888999999999999998876555443322 3478
Q ss_pred CEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 426 PKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 426 piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
|+++|+||+|+....... .....+++++||++|.|+++|+++|.+.+..
T Consensus 323 piiiV~NK~DL~~~~~~~---~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 323 PVIVVLNKADLTGEIDLE---EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CcEEEEEhhhccccchhh---hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 999999999997643322 2334679999999999999999999998864
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=210.66 Aligned_cols=201 Identities=26% Similarity=0.350 Sum_probs=156.0
Q ss_pred CCCcchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccc-cccccccc
Q 009371 269 GMGEKQIE-VDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFAT 346 (536)
Q Consensus 269 g~GE~~le-~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~T 346 (536)
++.|+.++ .....+..++..++++++++....+.....|.+. +++|+|.||||||||+|+|++.+.+ +.+.+++|
T Consensus 176 Dfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~---kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTT 252 (454)
T COG0486 176 DFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGL---KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTT 252 (454)
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc---eEEEECCCCCcHHHHHHHHhcCCceEecCCCCCc
Confidence 55565443 3555688889999999988877666666665554 6999999999999999999998765 34444555
Q ss_pred cCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC
Q 009371 347 LDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP 426 (536)
Q Consensus 347 ld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p 426 (536)
.|.-...+.+ +|.++.++||+|..+..+..+...+.++...+..||++++|+|++.+....+...+. .-..++|
T Consensus 253 RDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-----~~~~~~~ 326 (454)
T COG0486 253 RDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-----LLPKKKP 326 (454)
T ss_pred cceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-----hcccCCC
Confidence 5544445555 899999999999987777777788899999999999999999999986666655444 2234789
Q ss_pred EEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 427 KLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 427 iIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
+++|+||+|+...............+++.+||++|+|++.|.++|.+.+...
T Consensus 327 ~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 327 IIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 9999999999886543322223345799999999999999999999988876
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=3e-22 Score=186.79 Aligned_cols=151 Identities=26% Similarity=0.329 Sum_probs=111.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
+|+++|.||+|||||||+|+|....+.+++++|.+...+.+.+ ++..+.++||||.++-.+....+......-.....|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 5999999999999999999999999999999999988888887 778999999999876544433343333222246799
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HHHHHhccCCCEEEEeccCCCCHHHHHH
Q 009371 394 LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KVKLEAQKREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~~~~~~~~~~v~vSAktg~GIdeL~~ 469 (536)
++++|+|+++. +.+...+.+++ + .++|+++|+||+|+..... ........+.|++++||++|+|+++|++
T Consensus 81 ~ii~VvDa~~l--~r~l~l~~ql~-e---~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 81 LIIVVVDATNL--ERNLYLTLQLL-E---LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp EEEEEEEGGGH--HHHHHHHHHHH-H---TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred EEEEECCCCCH--HHHHHHHHHHH-H---cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 99999999874 34444333333 3 3689999999999875421 1222334568999999999999999998
Q ss_pred HH
Q 009371 470 AV 471 (536)
Q Consensus 470 ~I 471 (536)
+|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 76
No 10
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=6.2e-21 Score=198.95 Aligned_cols=164 Identities=30% Similarity=0.446 Sum_probs=125.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
+.|+|||.||||||||+|+|++....+.+++|+|+.+....+.+.++..+.++||||+++...... ..-...+.++..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~-gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGA-GLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccc-cHHHHHHHHhhhc
Confidence 469999999999999999999988888899999999999988876777899999999976432210 1123345677889
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHH----HHH-hccCCCEEEEeccCCCCHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKV----KLE-AQKREDVVCISALSGNGLD 465 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~----~~~-~~~~~~~v~vSAktg~GId 465 (536)
|++++|+|+++....++...+...|.... ..++|+++|+||+|+....... ... .....+++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 99999999997655555555555555432 2478999999999997643211 111 1223689999999999999
Q ss_pred HHHHHHHHHhcc
Q 009371 466 EFCSAVQEKLKD 477 (536)
Q Consensus 466 eL~~~I~~~l~~ 477 (536)
+|+++|.+.+..
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 11
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=2.9e-20 Score=172.66 Aligned_cols=160 Identities=23% Similarity=0.305 Sum_probs=105.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH-HHhHHHH-H
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF-RATLEEI-S 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f-~~tl~ei-~ 390 (536)
|+|+++|++|||||||+|+|++..+.....++.|.+.....+.+ ++..+.+|||||+... +......+ ...+..+ .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDR-PLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCc-cccCCchHHHHHHHHHHh
Confidence 57999999999999999999998765554555565555555544 5678999999998431 11100111 1112122 2
Q ss_pred hccceEEEEeCCCcchH--HHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH---HHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAE--QQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV---KLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~--~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~---~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|+++.... .....+...+... ..+.|+++|+||+|+....... ........+++++||++|.|++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVD 157 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHH
Confidence 36899999999876431 2212222223221 1378999999999997643321 1112235679999999999999
Q ss_pred HHHHHHHHHh
Q 009371 466 EFCSAVQEKL 475 (536)
Q Consensus 466 eL~~~I~~~l 475 (536)
+++++|.+.+
T Consensus 158 ~l~~~l~~~~ 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 12
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=3.6e-20 Score=172.16 Aligned_cols=161 Identities=31% Similarity=0.428 Sum_probs=114.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
.|+++|++|||||||+|+|++....+...+++|.+++...+.+.+...+.+|||||+....... ......++..+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG-KGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc-CCchHHHHHHHHhCC
Confidence 3899999999999999999987765556667777777777766333389999999985322111 011223345567799
Q ss_pred ceEEEEeCCCc-chHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHH---HHHh-c-cCCCEEEEeccCCCCHH
Q 009371 394 LLVHVVDISHP-LAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKV---KLEA-Q-KREDVVCISALSGNGLD 465 (536)
Q Consensus 394 liLlVvD~s~~-~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~---~~~~-~-~~~~~v~vSAktg~GId 465 (536)
++++|+|++++ ....+...+.+.+.... ..++|+++|+||+|+.+..... .... . ...+++++||++|.|++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLD 160 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence 99999999987 55555555544444432 2468999999999997654321 1111 2 25689999999999999
Q ss_pred HHHHHHHHHh
Q 009371 466 EFCSAVQEKL 475 (536)
Q Consensus 466 eL~~~I~~~l 475 (536)
+++++|.+.+
T Consensus 161 ~l~~~i~~~~ 170 (170)
T cd01898 161 ELLRKLAELL 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998653
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4.1e-20 Score=194.87 Aligned_cols=158 Identities=32% Similarity=0.375 Sum_probs=127.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHH-HHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAA-FRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~-f~~tl~ei~ 390 (536)
|.|+|||.||+|||||+|+|+|...+ +.+.++.|.|...+...+ .+..+.++||+|+....+..+... ...++..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 68999999999999999999998765 678888899988888887 677899999999965443333333 345788899
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH-HHhccCCCEEEEeccCCCCHHHHHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK-LEAQKREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~-~~~~~~~~~v~vSAktg~GIdeL~~ 469 (536)
.||++|+|+|+..+.+.++...... |.. .++|+|+|+||+|-........ .......++++|||..|.|+.+|++
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~-Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKI-LRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLD 158 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHH-HHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHH
Confidence 9999999999999888887665443 333 3689999999999875443332 2334557899999999999999999
Q ss_pred HHHHHh
Q 009371 470 AVQEKL 475 (536)
Q Consensus 470 ~I~~~l 475 (536)
++.+.+
T Consensus 159 ~v~~~l 164 (444)
T COG1160 159 AVLELL 164 (444)
T ss_pred HHHhhc
Confidence 999997
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=8.8e-20 Score=184.88 Aligned_cols=159 Identities=26% Similarity=0.359 Sum_probs=111.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH-HHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF-RATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f-~~tl~ei~~ 391 (536)
.|+++|+||||||||+|+|+|.++. +.+.+.+|.+... .+...++.++.++||||+.... ..+...+ ..+...+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~~qii~vDTPG~~~~~-~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGASQIIFIDTPGFHEKK-HSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCCcEEEEEECcCCCCCc-chHHHHHHHHHHHHHhh
Confidence 5899999999999999999998764 3444555554332 3333456679999999986531 2222222 335566789
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHH---Hh--ccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKL---EA--QKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~---~~--~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|+++..... ..+...+.. .+.|+++|+||+|+......... .. ....+++++||++|.|+++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 99999999999865543 333333333 46899999999999754322211 11 1224799999999999999
Q ss_pred HHHHHHHHhcccc
Q 009371 467 FCSAVQEKLKDSM 479 (536)
Q Consensus 467 L~~~I~~~l~~~~ 479 (536)
|+++|.+.+....
T Consensus 155 L~~~l~~~l~~~~ 167 (270)
T TIGR00436 155 LAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHHHhCCCCC
Confidence 9999999987764
No 15
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=9.4e-20 Score=195.07 Aligned_cols=166 Identities=31% Similarity=0.422 Sum_probs=124.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.-|+|||.||||||||||+|++....+.+++|+|+.|....+.+.++..+.++||||++...... .......+..+..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~-~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEG-VGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCccccccc-chHHHHHHHHHhhC
Confidence 36999999999999999999998888888999999999988887557899999999997532211 11123345667789
Q ss_pred cceEEEEeCCCc---chHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHHHHHh-ccCCCEEEEeccCCCCHHH
Q 009371 393 SLLVHVVDISHP---LAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKVKLEA-QKREDVVCISALSGNGLDE 466 (536)
Q Consensus 393 DliLlVvD~s~~---~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~~~~~-~~~~~~v~vSAktg~GIde 466 (536)
++++||+|+++. ...++...+...|.... ..++|+++|+||+|+........... ....+++++||++++|+++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDE 317 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHH
Confidence 999999999764 33444455555555432 24789999999999854433222211 1226799999999999999
Q ss_pred HHHHHHHHhcccc
Q 009371 467 FCSAVQEKLKDSM 479 (536)
Q Consensus 467 L~~~I~~~l~~~~ 479 (536)
|+++|.+.+....
T Consensus 318 L~~~L~~~l~~~~ 330 (424)
T PRK12297 318 LLYAVAELLEETP 330 (424)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999887653
No 16
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.83 E-value=1e-19 Score=189.53 Aligned_cols=162 Identities=31% Similarity=0.435 Sum_probs=121.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
+.|+|||+||||||||+|+|++....+.+++|+|+.++...+.+.++..+.++||||++...... .......+..+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~-~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG-AGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc-ccHHHHHHHHHHhh
Confidence 46999999999999999999998877888899999999998888555899999999997543221 01112345567789
Q ss_pred cceEEEEeCCCc---chHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHH---HHHh-ccCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHP---LAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKV---KLEA-QKREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~---~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~---~~~~-~~~~~~v~vSAktg~G 463 (536)
|++++|+|+++. ...++...+.+.|..+. ..++|+++|+||+|+....... .... ....+++++||++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G 316 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG 316 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence 999999999875 34455555555454432 2478999999999997653211 1111 1245799999999999
Q ss_pred HHHHHHHHHHHh
Q 009371 464 LDEFCSAVQEKL 475 (536)
Q Consensus 464 IdeL~~~I~~~l 475 (536)
+++|+++|.+.+
T Consensus 317 I~eL~~~I~~~l 328 (329)
T TIGR02729 317 LDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 17
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.83 E-value=2.8e-19 Score=192.99 Aligned_cols=243 Identities=19% Similarity=0.225 Sum_probs=155.9
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCceeeccchhhhhhhhhccccchhhc----c----c----chhhccchhhhhhcCCccc
Q 009371 201 VIFDDELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAAL----Q----L----PRLTKMWTHLERQAGGQVK 268 (536)
Q Consensus 201 vi~~~~Lsp~Q~~nle~~~~~~~~V~DR~~lil~IF~~rA~t~eakL----q----l----~rL~~~~~~l~r~~gg~~~ 268 (536)
.+.|+.|.-.|...+.+.. +|.|..+.- | + .+|+..+..+.-+- ...-
T Consensus 106 AflNGk~DL~qaEav~dlI-------------------~a~t~~~~~~A~~~l~G~ls~~~~~~r~~l~~~~a~i-ea~i 165 (442)
T TIGR00450 106 AFLNGKMDLTQAEAINELI-------------------LAPNNKVKDIALNKLAGELDQKIEAIRKSLLQLLAQV-EVNI 165 (442)
T ss_pred HHhcCCccHHHHHHHHHHH-------------------hCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHe-eEEC
Confidence 3778899999998888876 455544332 1 1 12222221111110 0124
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCcc-cccccccccc
Q 009371 269 GMGEKQIEVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATL 347 (536)
Q Consensus 269 g~GE~~le~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tl 347 (536)
+++|...+. ..+..++..+..+++.+.... ..+.. .+..+|+++|++|||||||+|+|++... .+.+.+++|.
T Consensus 166 Df~ee~~~~--~~~~~~l~~~~~~l~~ll~~~-~~~~~---~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTr 239 (442)
T TIGR00450 166 DYEEDDDEQ--DSLNQLLLSIIAELKDILNSY-KLEKL---DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTR 239 (442)
T ss_pred CcCCCCccH--HHHHHHHHHHHHHHHHHHHHH-HHHHh---hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEE
Confidence 666654322 267777888888887766544 21222 2235799999999999999999998754 3455555555
Q ss_pred CCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCE
Q 009371 348 DPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPK 427 (536)
Q Consensus 348 d~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~pi 427 (536)
+.....+.+ +|.++.+|||||+.+.........+..+...+..+|++++|+|++++.+.+.. ++..+...++|+
T Consensus 240 d~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-----~l~~~~~~~~pi 313 (442)
T TIGR00450 240 DVVEGDFEL-NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-----LIIDLNKSKKPF 313 (442)
T ss_pred EEEEEEEEE-CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-----HHHHHhhCCCCE
Confidence 555555655 78899999999985433222223345566778899999999999987665443 233333347899
Q ss_pred EEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 428 LMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 428 IvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
++|+||+|+.... ..........+++.+||++ .|++++++.+.+.+..
T Consensus 314 IlV~NK~Dl~~~~-~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 314 ILVLNKIDLKINS-LEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred EEEEECccCCCcc-hhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 9999999996542 1111222345789999998 5888888888776654
No 18
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=1e-19 Score=182.93 Aligned_cols=163 Identities=25% Similarity=0.384 Sum_probs=117.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccc-ccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH-HHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAED-RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF-RATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~-~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f-~~tl~ei~~ 391 (536)
.|+|+|.||||||||+|+|.|.++.+.. .+-+|...- +.+...+..+++++||||+... .+.+.+.+ +.....+..
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I-~GI~t~~~~QiIfvDTPGih~p-k~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI-RGIVTTDNAQIIFVDTPGIHKP-KHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhhe-eEEEEcCCceEEEEeCCCCCCc-chHHHHHHHHHHHHHhcc
Confidence 5999999999999999999999887433 333333332 3344446789999999999665 33333333 335566788
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-HHH-----HhccCCCEEEEeccCCCCHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-VKL-----EAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-~~~-----~~~~~~~~v~vSAktg~GId 465 (536)
+|++++|+|+.++....+...++ .++. .+.|+++++||+|...+... ... ....+..++++||++|.|++
T Consensus 86 vDlilfvvd~~~~~~~~d~~il~-~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 86 VDLILFVVDADEGWGPGDEFILE-QLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred CcEEEEEEeccccCCccHHHHHH-HHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 99999999999877665433322 2332 46799999999999887652 111 11234589999999999999
Q ss_pred HHHHHHHHHhcccceEE
Q 009371 466 EFCSAVQEKLKDSMVWV 482 (536)
Q Consensus 466 eL~~~I~~~l~~~~~~~ 482 (536)
.|.+.+.+.+.+...++
T Consensus 162 ~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 162 TLLEIIKEYLPEGPWYY 178 (298)
T ss_pred HHHHHHHHhCCCCCCcC
Confidence 99999999999876443
No 19
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.83 E-value=8.1e-20 Score=184.61 Aligned_cols=224 Identities=27% Similarity=0.357 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEE
Q 009371 279 KRILRTQIGVLKKELESVRKHRKQYRNRR---VSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQ 355 (536)
Q Consensus 279 rr~i~~ri~~Lk~eL~~l~~~r~~~r~~r---~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~ 355 (536)
.-.++.++++|++||+.- +++....... .+.+..+|++||+|++|||||+|+|++....+.+++|+|+.+..+.+.
T Consensus 28 ig~lKaklA~Lr~El~~~-~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~ 106 (365)
T COG1163 28 IGLLKAKLAELREELEKR-KSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLE 106 (365)
T ss_pred HHHHHHHHHHHHHHHhhh-hhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEe
Confidence 357899999999999875 2121111111 133456899999999999999999999999999999999999999998
Q ss_pred EeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHH---------------------------
Q 009371 356 MKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQ--------------------------- 408 (536)
Q Consensus 356 l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~--------------------------- 408 (536)
+ +|..++++|+||++......... =+..+..++.||++++|+|+..+....
T Consensus 107 Y-~ga~IQild~Pgii~gas~g~gr-G~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~ 184 (365)
T COG1163 107 Y-KGAQIQLLDLPGIIEGASSGRGR-GRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKE 184 (365)
T ss_pred e-cCceEEEEcCcccccCcccCCCC-cceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEec
Confidence 8 89999999999998765443211 133556678999999999998654310
Q ss_pred ---------------HHHHHHHHHhhcCC------------------------CCCCEEEEEEcCCCCCChhHHHHHhcc
Q 009371 409 ---------------QIEAVDKVLSELDV------------------------SSIPKLMIWNKVDKVCDPQKVKLEAQK 449 (536)
Q Consensus 409 ---------------~~~~v~~vL~~l~~------------------------~~~piIvVlNKiDl~~~~~~~~~~~~~ 449 (536)
+.+.+..+|++.+. ..+|.|+|+||+|+....+.... . .
T Consensus 185 ~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l-~-~ 262 (365)
T COG1163 185 SGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERL-A-R 262 (365)
T ss_pred cCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHH-H-h
Confidence 23344555555543 24799999999999984332222 2 2
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEe-----------ec--CChhHHHHHHHHhceEEEEEE
Q 009371 450 REDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEAL-----------VP--FDKGELLSTIHQVGMVERTEY 508 (536)
Q Consensus 450 ~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~-----------ip--~~~~~l~~~i~~~~~v~~~~y 508 (536)
..+.+++||++|.|+++|.+.|.+.+.-.+++.... +. .+.++++..||.. .+..+.|
T Consensus 263 ~~~~v~isa~~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~-l~~~Fry 333 (365)
T COG1163 263 KPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRD-LVENFRY 333 (365)
T ss_pred ccceEEEecccCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHH-HHHhcce
Confidence 348999999999999999999999998776655421 11 2356888888873 4444555
No 20
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.8e-19 Score=195.49 Aligned_cols=165 Identities=29% Similarity=0.363 Sum_probs=122.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
..|+|||+||||||||+|+|++....+.+++|+|+.+....+.+ ++..+.++||||++....... ..-...+.++..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~-gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGK-GLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhh-HHHHHHHHHHHhc
Confidence 46999999999999999999999888889999999999988887 567899999999975332211 1112346677889
Q ss_pred cceEEEEeCCCc----chHHHHHHHHHHHhhc-----------CCCCCCEEEEEEcCCCCCChhHH---H-HHhccCCCE
Q 009371 393 SLLVHVVDISHP----LAEQQIEAVDKVLSEL-----------DVSSIPKLMIWNKVDKVCDPQKV---K-LEAQKREDV 453 (536)
Q Consensus 393 DliLlVvD~s~~----~~~~~~~~v~~vL~~l-----------~~~~~piIvVlNKiDl~~~~~~~---~-~~~~~~~~~ 453 (536)
|+++||+|+++. ....+...+...|..+ ...++|+|+|+||+|+....+.. . .......++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999752 2233344443333322 23578999999999997543221 1 112234689
Q ss_pred EEEeccCCCCHHHHHHHHHHHhcccc
Q 009371 454 VCISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 454 v~vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
++|||++++|+++|+.+|.+.+....
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999887654
No 21
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.82 E-value=5.5e-19 Score=160.85 Aligned_cols=153 Identities=30% Similarity=0.387 Sum_probs=112.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
+|+++|++|||||||+|+|++.... ..+.+..+.+.....+.+ ++.++.+|||||+.+.........+..+...+..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 6999999999999999999987643 344444555554555554 67789999999986543322223344566677899
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQ 472 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~ 472 (536)
|++++|+|++++........+.. ..++|+++|+||+|+...... .......+++++||+++.|+++|+++|.
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 153 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--LSLLAGKPIIAISAKTGEGLDELKEALL 153 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--ccccCCCceEEEECCCCCCHHHHHHHHH
Confidence 99999999998766655443332 347899999999999865443 2233457899999999999999999998
Q ss_pred HHh
Q 009371 473 EKL 475 (536)
Q Consensus 473 ~~l 475 (536)
+.+
T Consensus 154 ~~~ 156 (157)
T cd04164 154 ELA 156 (157)
T ss_pred Hhh
Confidence 764
No 22
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=3.9e-19 Score=188.93 Aligned_cols=166 Identities=24% Similarity=0.372 Sum_probs=121.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.-|+|||+||||||||+|+|++....+.+++++|..+..+.+.+.++..++++||||++....... ..-...+..+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~-~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA-GLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchh-hHHHHHHHHHHhC
Confidence 369999999999999999999988888899999999999988885566799999999975332111 0112345678889
Q ss_pred cceEEEEeCCC---cchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHH---HHHhcc---CCCEEEEeccCC
Q 009371 393 SLLVHVVDISH---PLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKV---KLEAQK---REDVVCISALSG 461 (536)
Q Consensus 393 DliLlVvD~s~---~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~---~~~~~~---~~~~v~vSAktg 461 (536)
|++++|+|++. ....++...+.+.+..+. ..++|+++|+||+|+....... ...... ..+++++||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 99999999883 233334444444444332 2468999999999997543221 111111 137899999999
Q ss_pred CCHHHHHHHHHHHhcccc
Q 009371 462 NGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~~~ 479 (536)
.|+++|+++|.+.+....
T Consensus 319 ~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 319 LGVKELCWDLMTFIEENP 336 (390)
T ss_pred cCHHHHHHHHHHHhhhCc
Confidence 999999999999987653
No 23
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=6.8e-19 Score=160.47 Aligned_cols=155 Identities=30% Similarity=0.344 Sum_probs=107.0
Q ss_pred EEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccc
Q 009371 316 SLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSL 394 (536)
Q Consensus 316 aIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDl 394 (536)
+++|.+|||||||+|+|++.... ....+.+|.+........ ++..+.++||||+....+.........+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 58999999999999999987532 233344444444444444 6778999999999654431111222334556788999
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhcc-CCCEEEEeccCCCCHHHHHHHHHH
Q 009371 395 LVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQK-REDVVCISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 395 iLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~-~~~~v~vSAktg~GIdeL~~~I~~ 473 (536)
+++|+|+.++....+.. +..++.. .+.|+++|+||+|+............. ..+++++||++|.|+++++++|.+
T Consensus 80 ii~v~d~~~~~~~~~~~-~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 80 ILFVVDGREGLTPADEE-IAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred EEEEEeccccCCccHHH-HHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence 99999998766544433 3334443 358999999999998765432222222 237899999999999999999987
Q ss_pred Hh
Q 009371 474 KL 475 (536)
Q Consensus 474 ~l 475 (536)
.+
T Consensus 156 ~~ 157 (157)
T cd01894 156 LL 157 (157)
T ss_pred hC
Confidence 53
No 24
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.81 E-value=1.5e-18 Score=159.99 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=103.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
+|+++|++|||||||+|+|++..+.....+..+.+.....+.+. ....+.+|||||.. .+.. ....+..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~~ 72 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP---------EYLEVRNEFYKD 72 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH---------HHHHHHHHHhcc
Confidence 58999999999999999999876644333322333333344442 12467799999972 1222 2234578
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcC-----CCCCCEEEEEEcCCCCCCh----hHH-HHHhccCCCEEEEeccCC
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELD-----VSSIPKLMIWNKVDKVCDP----QKV-KLEAQKREDVVCISALSG 461 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~-----~~~~piIvVlNKiDl~~~~----~~~-~~~~~~~~~~v~vSAktg 461 (536)
+|++++|+|.+++.+......+...+.... ..+.|+++|+||+|+.... ... ........+++++||++|
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 152 (168)
T cd04119 73 TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTG 152 (168)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 999999999998766555444433333322 1468999999999997321 111 122223468999999999
Q ss_pred CCHHHHHHHHHHHh
Q 009371 462 NGLDEFCSAVQEKL 475 (536)
Q Consensus 462 ~GIdeL~~~I~~~l 475 (536)
.|+++++++|.+.+
T Consensus 153 ~gi~~l~~~l~~~l 166 (168)
T cd04119 153 EGVNEMFQTLFSSI 166 (168)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 25
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.81 E-value=1.5e-18 Score=159.79 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=107.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||... ........+..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~--------~~~~~~~~~~~ 72 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER--------FRSLIPSYIRD 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH--------HHHHHHHHhcc
Confidence 5899999999999999999998776655565666666666665 34 3578999999621 11122334678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++.+......+...+......+.|+++|+||+|+..... ..........+++++||++|.|+++
T Consensus 73 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 73 SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKE 152 (161)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 99999999999876655444333322222223689999999999954321 1112223357899999999999999
Q ss_pred HHHHHHHHh
Q 009371 467 FCSAVQEKL 475 (536)
Q Consensus 467 L~~~I~~~l 475 (536)
++++|.+.+
T Consensus 153 l~~~i~~~l 161 (161)
T cd01861 153 LFRKIASAL 161 (161)
T ss_pred HHHHHHHhC
Confidence 999998753
No 26
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.80 E-value=1.4e-18 Score=159.76 Aligned_cols=149 Identities=22% Similarity=0.302 Sum_probs=99.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc---cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.|+++|++|||||||+|+|++.... .......|.+.....+.+.++..+.+|||||+. .....+...+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~--------~~~~~~~~~~~ 73 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE--------KFIKNMLAGAG 73 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH--------HHHHHHHhhhh
Confidence 5899999999999999999975321 111233455554445555336789999999971 11233445677
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh------HHHH-Hhc---cCCCEEEEeccC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ------KVKL-EAQ---KREDVVCISALS 460 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~------~~~~-~~~---~~~~~v~vSAkt 460 (536)
.+|++++|+|+++....+..+.+. .+...+ ..|+++|+||+|+..... .... ... ...+++++||++
T Consensus 74 ~ad~ii~V~d~~~~~~~~~~~~~~-~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (164)
T cd04171 74 GIDLVLLVVAADEGIMPQTREHLE-ILELLG--IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT 150 (164)
T ss_pred cCCEEEEEEECCCCccHhHHHHHH-HHHHhC--CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence 899999999998754333333222 233332 249999999999976421 1111 111 346899999999
Q ss_pred CCCHHHHHHHHHH
Q 009371 461 GNGLDEFCSAVQE 473 (536)
Q Consensus 461 g~GIdeL~~~I~~ 473 (536)
|.|++++++.|..
T Consensus 151 ~~~v~~l~~~l~~ 163 (164)
T cd04171 151 GEGIEELKEYLDE 163 (164)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999998854
No 27
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.80 E-value=2e-18 Score=160.40 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=106.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|++|||||||++++.+..+.....+..+.+.....+.+ ++ ..+.+|||||.. .+.. ....+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE---------RFRTITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcH---------hHHHHHHHHh
Confidence 47999999999999999999987654332222222333344444 33 367899999972 1222 22345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+..... ..........+++++||++|.|+
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 152 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNV 152 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCH
Confidence 7899999999999876655555444444444445689999999999865321 11222234568999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++.+|.+.+.
T Consensus 153 ~~~~~~i~~~~~ 164 (166)
T cd01869 153 EQAFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 28
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=2.1e-18 Score=160.33 Aligned_cols=152 Identities=19% Similarity=0.211 Sum_probs=104.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|++|||||||++++.+..+........+.+.....+.+ ++ ..+.+|||||. +.|.. ....+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~---------~~~~~~~~~~~ 73 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQ---------ERFRTITQSYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCCh---------HHHHHHHHHHh
Confidence 57999999999999999999876543322222222333444544 44 36789999997 12222 33446
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HH-HHHhc-cCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KV-KLEAQ-KREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~-~~~~~-~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+....+ .. ..... ....++++||++|.|
T Consensus 74 ~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN 153 (165)
T ss_pred ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCC
Confidence 7899999999999987655554444444444445789999999999875421 11 11112 224689999999999
Q ss_pred HHHHHHHHHHH
Q 009371 464 LDEFCSAVQEK 474 (536)
Q Consensus 464 IdeL~~~I~~~ 474 (536)
+++++++|.+.
T Consensus 154 v~~~~~~l~~~ 164 (165)
T cd01864 154 VEEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 29
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=4.9e-19 Score=164.98 Aligned_cols=157 Identities=31% Similarity=0.402 Sum_probs=109.4
Q ss_pred EEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceE
Q 009371 317 LVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLV 396 (536)
Q Consensus 317 IVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliL 396 (536)
++|++|||||||+|+|++....+.+.+++|.++....+.+.++..+.+|||||+........ .........+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR-GLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC-CccHHHHHHHhccCEEE
Confidence 58999999999999999987655666777777777766663388999999999853221110 00112344567799999
Q ss_pred EEEeCCCc------chHHHHHHHHHHHhhcC-------CCCCCEEEEEEcCCCCCChhHHH-----HHhccCCCEEEEec
Q 009371 397 HVVDISHP------LAEQQIEAVDKVLSELD-------VSSIPKLMIWNKVDKVCDPQKVK-----LEAQKREDVVCISA 458 (536)
Q Consensus 397 lVvD~s~~------~~~~~~~~v~~vL~~l~-------~~~~piIvVlNKiDl~~~~~~~~-----~~~~~~~~~v~vSA 458 (536)
+|+|+++. ....+...+...+.... ..++|+++|+||+|+........ .......+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999887 33333333333333222 13689999999999976543222 12234567999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 009371 459 LSGNGLDEFCSAVQEK 474 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~ 474 (536)
++|.|++++++++...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 30
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.80 E-value=2.2e-18 Score=160.61 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=103.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+++|.+..+.....+..+.+.....+.. ++ ..+.+|||+|... ........+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~--------~~~~~~~~~~ 72 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER--------YRTITTAYYR 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH--------HHHHHHHHcc
Confidence 46999999999999999999987653222221111111222322 33 4678999999721 1111234467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|.+++.+.+....+...+......+.|+++|+||+|+..... . .........+++++||++|.|++
T Consensus 73 ~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 152 (165)
T cd01865 73 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVK 152 (165)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 899999999999876555554444444444445789999999999975421 1 11122234579999999999999
Q ss_pred HHHHHHHHHhc
Q 009371 466 EFCSAVQEKLK 476 (536)
Q Consensus 466 eL~~~I~~~l~ 476 (536)
+++++|.+.+.
T Consensus 153 ~l~~~l~~~~~ 163 (165)
T cd01865 153 QVFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999988664
No 31
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.80 E-value=2.4e-18 Score=159.57 Aligned_cols=153 Identities=23% Similarity=0.245 Sum_probs=108.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|++|||||||+++|++..+.....+..+.+.....+.. ++. .+.+|||||.. .+.. ....+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQE---------RYRAITSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChH---------HHHHHHHHHH
Confidence 46999999999999999999988765444444444445555555 343 57899999972 1222 22345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..++++++|+|++++.+......+...+......+.|+++|+||+|+.... +..........+++++||++|.|+
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNV 153 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 779999999999987666555544444444444468999999999986532 111222234567999999999999
Q ss_pred HHHHHHHHHHh
Q 009371 465 DEFCSAVQEKL 475 (536)
Q Consensus 465 deL~~~I~~~l 475 (536)
++++++|...+
T Consensus 154 ~~l~~~l~~~i 164 (165)
T cd01868 154 EEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 32
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.80 E-value=1.8e-18 Score=169.08 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=111.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|++|||||||+++|++..+.....++.+.+.....+.+.++ ..+.+|||+|.. .+..+ .-..+..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~--~~~~l------~~~~~~~ 73 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS--IGGKM------LDKYIYG 73 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH--HHHHH------HHHHhhc
Confidence 5899999999999999999987665444454455555566666443 467899999961 11111 1223678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCC---CCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDV---SSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~---~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~G 463 (536)
+|++++|+|++++.+.+....+...+..... .+.|+++|+||+|+..... . .........+++++||++|.|
T Consensus 74 ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~g 153 (215)
T cd04109 74 AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDR 153 (215)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 9999999999998776666655555554421 3467999999999974321 1 111222346789999999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
+++++++|.+.+...
T Consensus 154 v~~lf~~l~~~l~~~ 168 (215)
T cd04109 154 VNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
No 33
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=3.5e-19 Score=179.38 Aligned_cols=159 Identities=31% Similarity=0.378 Sum_probs=124.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccch--hhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP--TTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp--~~l~e~f~~tl~ei~ 390 (536)
+-|++||.||||||||+|+|+.....+.++.|+|+.|+.+.+.+.+...+.+.|.||+|+... ..+-. ..+..+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~---~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGY---KFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccH---HHHHHHH
Confidence 468999999999999999999999999999999999999998887777899999999987532 22222 2466778
Q ss_pred hccceEEEEeCCCc---chHHHHHHHHHHHhhc--CCCCCCEEEEEEcCCCCCChhHH-HHHhc--cCCCEEEEeccCCC
Q 009371 391 ESSLLVHVVDISHP---LAEQQIEAVDKVLSEL--DVSSIPKLMIWNKVDKVCDPQKV-KLEAQ--KREDVVCISALSGN 462 (536)
Q Consensus 391 ~aDliLlVvD~s~~---~~~~~~~~v~~vL~~l--~~~~~piIvVlNKiDl~~~~~~~-~~~~~--~~~~~v~vSAktg~ 462 (536)
.++.+++|+|++.+ ...++++.+..-|+.+ +..+.|.++|+||+|+.+..... ..... ....+|++||++++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeecccc
Confidence 89999999999988 5556666555444443 45688999999999996443322 22222 23459999999999
Q ss_pred CHHHHHHHHHHH
Q 009371 463 GLDEFCSAVQEK 474 (536)
Q Consensus 463 GIdeL~~~I~~~ 474 (536)
|+++|++.|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999998764
No 34
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.80 E-value=2.3e-18 Score=166.84 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=107.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+|+|.+|||||||++++.+..+.....+..+.+.....+.+ +|. .+.+|||||..........+........+..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999987664333232222322233444 553 5679999997432111111111223345688
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhc---CCCCCCEEEEEEcCCCCCCh----hHHHHH-h-ccCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSEL---DVSSIPKLMIWNKVDKVCDP----QKVKLE-A-QKREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l---~~~~~piIvVlNKiDl~~~~----~~~~~~-~-~~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++.+.+....+...+... +..++|+++|+||+|+.... ...... . ....+++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 99999999999887665555444333332 24578999999999996532 111111 1 235789999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 009371 463 GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~ 478 (536)
|++++++.+.+.+...
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999998766543
No 35
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.80 E-value=2.6e-18 Score=160.36 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=106.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|++|||||||++++++..+.....+..+.+.....+.+ ++ ..+.+|||||.. .+.. ....+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~---------~~~~~~~~~~ 73 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQE---------RFRTITTAYY 73 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEEEeCCchH---------HHHHHHHHHh
Confidence 57999999999999999999987654332222222223344444 33 367899999962 1221 22446
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+..... ..........+++++||++|.|+
T Consensus 74 ~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 74 RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINV 153 (167)
T ss_pred CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 7899999999998876655554444444443345789999999999975321 11222234568999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++++|.+.+.
T Consensus 154 ~~~~~~i~~~~~ 165 (167)
T cd01867 154 EEAFFTLAKDIK 165 (167)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 36
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=2.8e-18 Score=179.57 Aligned_cols=163 Identities=24% Similarity=0.320 Sum_probs=111.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc-ccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
..|+++|.+|||||||+|+|++..+.. ...+.+|.+.....+.. ++.++.+|||||+...........++.+...+..
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~ 131 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHS 131 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhh
Confidence 369999999999999999999987642 33444555544444554 6778999999998543222111233445566789
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-hHHHH-Hhc--cCCCEEEEeccCCCCHHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-QKVKL-EAQ--KREDVVCISALSGNGLDEF 467 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-~~~~~-~~~--~~~~~v~vSAktg~GIdeL 467 (536)
+|++++|+|++......+.. ++..+...+.|.++|+||+|+.... ..... ... ...+++++||++|.|+++|
T Consensus 132 aDvil~VvD~~~s~~~~~~~----il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 132 ADLVLLIIDSLKSFDDITHN----ILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGL 207 (339)
T ss_pred CCEEEEEEECCCCCCHHHHH----HHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHH
Confidence 99999999988765443322 2222222356889999999986542 11111 111 2357899999999999999
Q ss_pred HHHHHHHhcccce
Q 009371 468 CSAVQEKLKDSMV 480 (536)
Q Consensus 468 ~~~I~~~l~~~~~ 480 (536)
+++|.+.+.....
T Consensus 208 ~~~L~~~l~~~~~ 220 (339)
T PRK15494 208 LEYITSKAKISPW 220 (339)
T ss_pred HHHHHHhCCCCCC
Confidence 9999999887653
No 37
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.79 E-value=3.1e-18 Score=158.56 Aligned_cols=151 Identities=25% Similarity=0.296 Sum_probs=102.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe--CCeeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK--NGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~--~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
|+|+++|++|||||||+|+|++..+........|.+.....+... .+..+.++||||... +.. ....+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~ 71 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA---------FTNMRARGA 71 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH---------HHHHHHHHH
Confidence 579999999999999999999876554333333333333333332 366899999999721 211 22345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HH----HHHh-------ccCCCEEEEe
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KV----KLEA-------QKREDVVCIS 457 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~----~~~~-------~~~~~~v~vS 457 (536)
..+|++++|+|+++....+....+.. +.. .++|+++|+||+|+..... .. .... ....+++++|
T Consensus 72 ~~~d~il~v~d~~~~~~~~~~~~~~~-~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQTIEAIKL-AKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTS 147 (168)
T ss_pred hhcCEEEEEEECCCCccHHHHHHHHH-HHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEee
Confidence 78999999999998655444443332 332 4689999999999875421 11 1110 1135799999
Q ss_pred ccCCCCHHHHHHHHHHHhc
Q 009371 458 ALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 458 Aktg~GIdeL~~~I~~~l~ 476 (536)
|++|.|+++|+++|.+...
T Consensus 148 a~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 148 AKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cccCCCHHHHHHHHHHhhh
Confidence 9999999999999987654
No 38
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.79 E-value=5e-18 Score=158.09 Aligned_cols=154 Identities=20% Similarity=0.203 Sum_probs=104.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|++|||||||++++.+..+.....+....+.....+.+ ++. .+.+|||||. +.+.. ....+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~---------~~~~~~~~~~~ 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQ---------ERFRAVTRSYY 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCc---------HHHHHHHHHHh
Confidence 46999999999999999999977553221111111222233334 443 5689999997 22222 33456
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+.+....+...+......+.|+++|+||+|+..... ..........+++++||++|.|+
T Consensus 73 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 152 (166)
T cd04122 73 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENV 152 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 8899999999999976655555444333344445689999999999865421 11122234568999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++..+...+.
T Consensus 153 ~e~f~~l~~~~~ 164 (166)
T cd04122 153 EDAFLETAKKIY 164 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 39
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.79 E-value=4.9e-18 Score=158.85 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=107.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||++++++..+.....+..+.+.....+.. ++ ..+.+|||||. +.+.. ....+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~---------~~~~~~~~~~~ 74 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQ---------ESFRSITRSYY 74 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCc---------HHHHHHHHHHh
Confidence 57999999999999999999987654433333333444444444 33 36789999996 22222 33456
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+..... . .........+++++||++|.|+
T Consensus 75 ~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 75 RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 7899999999999876655554444333333345789999999999874321 1 1122234568999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++.++.+.+.
T Consensus 155 ~~~~~~~~~~~~ 166 (168)
T cd01866 155 EEAFINTAKEIY 166 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 40
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=1.9e-18 Score=171.70 Aligned_cols=164 Identities=27% Similarity=0.375 Sum_probs=121.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
+|+++|++|+|||||+|+|++....+.+.+++|.++..+.+.+ ++..+.+|||||+.+..+... ......+..+..+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGK-GRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccch-hHHHHHHHhhccCC
Confidence 5899999999999999999998877778889998888887776 778999999999865432211 12233456678999
Q ss_pred ceEEEEeCCCcchHH------------------------------------------HHHHHHHHHhhcCC---------
Q 009371 394 LLVHVVDISHPLAEQ------------------------------------------QIEAVDKVLSELDV--------- 422 (536)
Q Consensus 394 liLlVvD~s~~~~~~------------------------------------------~~~~v~~vL~~l~~--------- 422 (536)
++++|+|++++.... +.+.+..+|++++.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999997653211 11334444544432
Q ss_pred ---------------CCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcccceE
Q 009371 423 ---------------SSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDSMVW 481 (536)
Q Consensus 423 ---------------~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~ 481 (536)
..+|+++|+||+|+....+... .....+++++||++|.|++++++.|.+.+.-.+++
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~~irvy 231 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL--LARQPNSVVISAEKGLNLDELKERIWDKLGLIRVY 231 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH--HhcCCCEEEEcCCCCCCHHHHHHHHHHHhCcEEEe
Confidence 2359999999999976544332 22245789999999999999999999988765544
No 41
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=5.6e-18 Score=173.17 Aligned_cols=160 Identities=26% Similarity=0.385 Sum_probs=108.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccc-ccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHH-HHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAA-FRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~-f~~tl~ei~~ 391 (536)
.|+++|++|||||||+|+|+|..+.. .+.+.+|.... ..+...++.++.++||||+..... .+... ...+...+..
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i-~~i~~~~~~qi~~iDTPG~~~~~~-~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI-RGIVTEDDAQIIFVDTPGIHKPKR-ALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE-EEEEEcCCceEEEEECCCCCCchh-HHHHHHHHHHHHHHhc
Confidence 59999999999999999999987643 22222222222 222223456899999999865332 12222 2334556788
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH----HHHh--ccCCCEEEEeccCCCCHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV----KLEA--QKREDVVCISALSGNGLD 465 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~----~~~~--~~~~~~v~vSAktg~GId 465 (536)
+|++++|+|++++........ +..+...+.|+++|+||+|+....... .... ....+++++||++|.|++
T Consensus 85 ~D~il~vvd~~~~~~~~~~~i----~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~ 160 (292)
T PRK00089 85 VDLVLFVVDADEKIGPGDEFI----LEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVD 160 (292)
T ss_pred CCEEEEEEeCCCCCChhHHHH----HHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHH
Confidence 999999999998554433222 222223468999999999998442211 1111 134679999999999999
Q ss_pred HHHHHHHHHhcccc
Q 009371 466 EFCSAVQEKLKDSM 479 (536)
Q Consensus 466 eL~~~I~~~l~~~~ 479 (536)
+|+++|.+.+....
T Consensus 161 ~L~~~L~~~l~~~~ 174 (292)
T PRK00089 161 ELLDVIAKYLPEGP 174 (292)
T ss_pred HHHHHHHHhCCCCC
Confidence 99999999987654
No 42
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=6.2e-18 Score=162.01 Aligned_cols=155 Identities=23% Similarity=0.266 Sum_probs=107.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccccc-CCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL-DPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl-d~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
+|+++|.+|||||||++++.+..+.......++. +.....+.+ ++ ..+.+|||||. ..+.. ....+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~---------~~~~~~~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQ---------ERFRSVTHAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCc---------HHHHHhhHHHc
Confidence 5899999999999999999987654332222211 222222333 44 36779999996 22222 23446
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|+++..+.+....+...+......+.|+++|+||+|+.... +..........+++++||++|.|+
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v 151 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNV 151 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 779999999999987766655555555555555578999999999986421 111222233468999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++++.+|.+.+...
T Consensus 152 ~~l~~~l~~~~~~~ 165 (191)
T cd04112 152 ELAFTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888655
No 43
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.79 E-value=7.9e-18 Score=155.04 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=106.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|++|||||||++++++..+........+.+.....+.+ ++ ..+.+|||||.. .+.. ....+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~---------~~~~~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQE---------RFRSITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChH---------HHHHHHHHHhC
Confidence 5999999999999999999987664333333333334444554 44 367899999961 1222 233457
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+.+....+...+......+.|+++|+||+|+.... + ..........+++++||++|.|++
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 151 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVE 151 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 79999999999987666555444333333333578999999999987532 1 111222335679999999999999
Q ss_pred HHHHHHHHHhc
Q 009371 466 EFCSAVQEKLK 476 (536)
Q Consensus 466 eL~~~I~~~l~ 476 (536)
+++++|.+.+.
T Consensus 152 ~l~~~i~~~~~ 162 (164)
T smart00175 152 EAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 44
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.79 E-value=4.2e-18 Score=165.78 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=109.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
.|+++|..|||||||++++....+.....+..+.+.....+.+ ++ ..+.+|||+|. +.|.. ....+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGq---------e~~~~l~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQ---------ERFNSITSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCc---------hhhHHHHHHHhc
Confidence 4899999999999999999977654322222223333344555 44 46789999997 22333 234568
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH----HHHHh-c-cCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK----VKLEA-Q-KREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~----~~~~~-~-~~~~~v~vSAktg~GI 464 (536)
.+|++++|+|++++.+.+....+...+......+.|+++|+||+|+....+. ..... . ....++++||++|.||
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV 151 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 8999999999999887777766666666555567899999999998653221 11111 1 2467999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
+++|.+|.+.+..
T Consensus 152 ~e~F~~l~~~~~~ 164 (202)
T cd04120 152 DEIFLKLVDDILK 164 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 45
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.78 E-value=6.3e-18 Score=156.06 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=105.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|++|||||||+++|.+..+........+.+..+..+.+ ++ ..+.+|||||.. .+.. ....+.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~---------~~~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQE---------RFRSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEECcchH---------HHHHhHHHHhc
Confidence 5899999999999999999987654333333333333334444 33 367899999972 1222 234467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+..+...+.|+++|+||+|+..... ..........+++++||++|.|++
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 151 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVE 151 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 899999999999987665555444444444456889999999999875321 112222344789999999999999
Q ss_pred HHHHHHHHH
Q 009371 466 EFCSAVQEK 474 (536)
Q Consensus 466 eL~~~I~~~ 474 (536)
++++++.+.
T Consensus 152 ~~~~~~~~~ 160 (161)
T cd04113 152 EAFLKCARS 160 (161)
T ss_pred HHHHHHHHh
Confidence 999999764
No 46
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.78 E-value=2.6e-18 Score=157.27 Aligned_cols=152 Identities=28% Similarity=0.311 Sum_probs=105.5
Q ss_pred EEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhccce
Q 009371 317 LVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESSLL 395 (536)
Q Consensus 317 IVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aDli 395 (536)
|+|++|+|||||+|++++........+++|.+.....+.+ ++..+.+|||||+...........+.. .+.. ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 5899999999999999998766666677778777777776 567899999999854322211111211 1111 489999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HHHHHhccCCCEEEEeccCCCCHHHHHHHH
Q 009371 396 VHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KVKLEAQKREDVVCISALSGNGLDEFCSAV 471 (536)
Q Consensus 396 LlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~~~~~~~~~~v~vSAktg~GIdeL~~~I 471 (536)
++|+|++++... ...+.. +.. .++|+++|+||+|+..... ..........+++++||++|.|+++++++|
T Consensus 79 i~v~d~~~~~~~--~~~~~~-~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 79 VNVVDATNLERN--LYLTLQ-LLE---LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred EEEeeCCcchhH--HHHHHH-HHH---cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHH
Confidence 999999875322 122222 222 3689999999999975421 111112235689999999999999999999
Q ss_pred HHHhc
Q 009371 472 QEKLK 476 (536)
Q Consensus 472 ~~~l~ 476 (536)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd01879 153 AELAE 157 (158)
T ss_pred HHHhc
Confidence 87643
No 47
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=2.6e-18 Score=181.36 Aligned_cols=164 Identities=24% Similarity=0.333 Sum_probs=128.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhh---HHHHHHHhHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT---LVAAFRATLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~---l~e~f~~tl~ 387 (536)
..+|+|+|.||+|||||+|+|+|.+.. +.+.+++|.|.-...+.+ ++..+.++||+|..+..-.. +..+..+++.
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 458999999999999999999998654 566677777777777776 89999999999997543221 1223456888
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH--------HH--HhccCCCEEEEe
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV--------KL--EAQKREDVVCIS 457 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~--------~~--~~~~~~~~v~vS 457 (536)
.+..+|++++|+|++.+.+.++...+..+.+. ++++++|+||+|+....... .. ....+.+++++|
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~----g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEEA----GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHHc----CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 89999999999999999998887766655554 78999999999998752211 11 112457899999
Q ss_pred ccCCCCHHHHHHHHHHHhcccce
Q 009371 458 ALSGNGLDEFCSAVQEKLKDSMV 480 (536)
Q Consensus 458 Aktg~GIdeL~~~I~~~l~~~~~ 480 (536)
|++|.|++++++++.+.......
T Consensus 333 A~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred ecCCCChHHHHHHHHHHHHHhcc
Confidence 99999999999999998876543
No 48
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=4.4e-18 Score=157.88 Aligned_cols=149 Identities=23% Similarity=0.258 Sum_probs=100.4
Q ss_pred EEEEccCCCChHHHHHhhhCCcccc----ccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLA----EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~----~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
|+++|++|||||||+|+|++..... ......|.....+.+.+ ++..+.+|||||+.. +.. ....+
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~---------~~~~~~~~~ 71 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES---------LRSLWDKYY 71 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh---------hHHHHHHHh
Confidence 8999999999999999998643211 11223344444455655 678999999999821 222 23346
Q ss_pred HhccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHh--------ccCCCEEEEec
Q 009371 390 SESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEA--------QKREDVVCISA 458 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~--------~~~~~~v~vSA 458 (536)
..+|++++|+|++++...... ..+..++......+.|+++|+||+|+..... ...... ....+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 789999999999876433222 2333444433345789999999999865421 111111 12347999999
Q ss_pred cCCCCHHHHHHHHHH
Q 009371 459 LSGNGLDEFCSAVQE 473 (536)
Q Consensus 459 ktg~GIdeL~~~I~~ 473 (536)
++|.|+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999864
No 49
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=8.6e-18 Score=183.27 Aligned_cols=163 Identities=26% Similarity=0.393 Sum_probs=120.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhH-HHHHHH--hHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTL-VAAFRA--TLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l-~e~f~~--tl~ 387 (536)
.++|+++|++|||||||+|+|++.... +.+.+++|.++....+.+ ++..+.+|||||+.+...... .+.+.. +..
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 468999999999999999999998643 456677777776666666 788899999999854332211 233322 345
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------HHHHh--ccCCCEEEEecc
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------VKLEA--QKREDVVCISAL 459 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------~~~~~--~~~~~~v~vSAk 459 (536)
.+..+|++++|+|++++.+.++...+..+.. .++|+|+|+||+|+...... ..... ....+++++||+
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 6789999999999999887776655443332 47899999999999753211 11111 134689999999
Q ss_pred CCCCHHHHHHHHHHHhcccc
Q 009371 460 SGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~~~ 479 (536)
+|.|++++++.|.+.+....
T Consensus 366 ~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 366 TGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 50
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.78 E-value=1e-17 Score=154.60 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=104.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+.....+.......+..+.+.+ +..+.+|||||.. .+.. ....+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE---------RYRSLAPMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH---------HHHHHHHHHhc
Confidence 3699999999999999999998765432222211112234444422 2367899999962 1222 223456
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... ...........+++++||++|.|++
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVN 152 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 79999999999987655554444444444444578999999999987421 1112222334789999999999999
Q ss_pred HHHHHHHHHh
Q 009371 466 EFCSAVQEKL 475 (536)
Q Consensus 466 eL~~~I~~~l 475 (536)
+++++|.+.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd01860 153 ELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 51
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=7.7e-18 Score=183.61 Aligned_cols=161 Identities=30% Similarity=0.372 Sum_probs=113.5
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHH-HhHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFR-ATLEE 388 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~-~tl~e 388 (536)
+.|+|+|+|.+|||||||+|+|++.... ..+.++.|.+.....+.+ ++..+.+|||||+.... ..+...+. .+...
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDA-KGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcc-hhHHHHHHHHHHHH
Confidence 4578999999999999999999987543 344555555555555555 67889999999985322 22222333 34556
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH-HHhccCCCEEEEeccCCCCHHHH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK-LEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~-~~~~~~~~~v~vSAktg~GIdeL 467 (536)
+..||++|+|+|++++.+..+.. +..++.. .++|+++|+||+|+........ .........+++||++|.|+++|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~~~-i~~~l~~---~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATDEA-VARVLRR---SGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDL 190 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHH
Confidence 78999999999999876654432 3334443 4789999999999865322111 11222335689999999999999
Q ss_pred HHHHHHHhcc
Q 009371 468 CSAVQEKLKD 477 (536)
Q Consensus 468 ~~~I~~~l~~ 477 (536)
+++|.+.+..
T Consensus 191 ~~~i~~~l~~ 200 (472)
T PRK03003 191 LDAVLAALPE 200 (472)
T ss_pred HHHHHhhccc
Confidence 9999988755
No 52
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.78 E-value=1e-17 Score=154.43 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=100.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|++|+|||||++++++..+. .....++.+.......+ ++. .+.+|||||..+ +.. ....+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~---------~~~~~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV-TDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEE---------FSAMREQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceEEEEEEE-CCEEEEEEEEECCCCcc---------hhHHHHHHH
Confidence 47999999999999999999876542 22211111112222333 443 577899999732 111 12345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHH-HHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDK-VLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~-vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+......+.. +.......+.|+++|+||+|+..... . .........+++++||++|.|
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 151 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLN 151 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCC
Confidence 78999999999998765544443322 33323345789999999999865321 1 111122346899999999999
Q ss_pred HHHHHHHHHHHh
Q 009371 464 LDEFCSAVQEKL 475 (536)
Q Consensus 464 IdeL~~~I~~~l 475 (536)
+++++++|.+.+
T Consensus 152 i~~l~~~l~~~~ 163 (164)
T cd04145 152 VDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 53
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=2e-17 Score=152.54 Aligned_cols=157 Identities=25% Similarity=0.349 Sum_probs=106.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchh-hHHHHH--HHhHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT-TLVAAF--RATLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~-~l~e~f--~~tl~e 388 (536)
.+|+++|.+|+|||||+|+|++.... ..+....+.+.....+.. ++..+.+|||||+.+.... ...+.+ ...+..
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 47999999999999999999987533 233344444444444444 6778999999998543211 011111 234455
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHH---HHHhc-----cCCCEEEEec
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKV---KLEAQ-----KREDVVCISA 458 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~---~~~~~-----~~~~~v~vSA 458 (536)
+..+|++++|+|++++........+. .+...+.|+++|+||+|+.... ... ..... ...+++++||
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~----~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAG----LILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHH----HHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 67899999999999887655443322 2222368999999999998652 111 11111 1368999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 009371 459 LSGNGLDEFCSAVQEK 474 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~ 474 (536)
++|.|++++++++.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 54
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.77 E-value=9.8e-18 Score=157.54 Aligned_cols=149 Identities=21% Similarity=0.257 Sum_probs=101.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
.++|+++|++|||||||+++|.+..+. ....|.......+.+ ++..+.+|||||... +.. ....+.
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~---~~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~---------~~~~~~~~~~ 80 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDID---TISPTLGFQIKTLEY-EGYKLNIWDVGGQKT---------LRPYWRNYFE 80 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC---CcCCccccceEEEEE-CCEEEEEEECCCCHH---------HHHHHHHHhC
Confidence 357999999999999999999987432 111233333344555 577889999999721 221 223467
Q ss_pred hccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHh------ccCCCEEEEeccCC
Q 009371 391 ESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEA------QKREDVVCISALSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~------~~~~~~v~vSAktg 461 (536)
.+|++++|+|++++...... ..+..++......+.|+++|+||+|+.... +...... ....+++++||++|
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 81 STDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 89999999999987543322 233444443334578999999999987532 2222111 12357999999999
Q ss_pred CCHHHHHHHHHH
Q 009371 462 NGLDEFCSAVQE 473 (536)
Q Consensus 462 ~GIdeL~~~I~~ 473 (536)
.|+++++++|.+
T Consensus 161 ~gi~~l~~~l~~ 172 (173)
T cd04154 161 EGLLQGIDWLVD 172 (173)
T ss_pred cCHHHHHHHHhc
Confidence 999999999863
No 55
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=167.51 Aligned_cols=190 Identities=22% Similarity=0.325 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 282 LRTQIGVLKKELESVRKHRKQYRNRRV-SVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 282 i~~ri~~Lk~eL~~l~~~r~~~r~~r~-~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
+.+-+.++...|+-+.+.|...++... ..+.|+|+|.|+||+|||||++++++.++.+.+++|+|-....+.+.. ++.
T Consensus 137 ~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~-~~~ 215 (346)
T COG1084 137 VASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER-GYL 215 (346)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec-CCc
Confidence 344466777888888888888777664 557899999999999999999999999999999999998888888877 777
Q ss_pred eEEEeecccccccchhhHHHHHH-HhHHHH-HhccceEEEEeCCCcc---hHHHHHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFR-ATLEEI-SESSLLVHVVDISHPL---AEQQIEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~-~tl~ei-~~aDliLlVvD~s~~~---~~~~~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
+++++||||+.+. |......+. .+...+ .-+++|+|++|.|... -++|...+.++-..+ +.|+++|+||+|
T Consensus 216 R~QvIDTPGlLDR-Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D 291 (346)
T COG1084 216 RIQVIDTPGLLDR-PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKID 291 (346)
T ss_pred eEEEecCCcccCC-ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEeccc
Confidence 9999999999653 322222222 222222 3468899999997642 356666666655554 479999999999
Q ss_pred CCCChhHHHH----HhccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 436 KVCDPQKVKL----EAQKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 436 l~~~~~~~~~----~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
..+....... ........+.+|+..+.+++.+.+.+.....
T Consensus 292 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 292 IADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred ccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhh
Confidence 8854332211 1223345678999999999999888877643
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.77 E-value=7e-18 Score=157.14 Aligned_cols=152 Identities=19% Similarity=0.240 Sum_probs=102.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||++++++..+... ...|...+.+.....++ ..+.+|||||..+.. ......+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCcchheEEEEEEECCEEEEEEEEECCCCCcch--------HHHHHHhh
Confidence 3699999999999999999998765322 22233333332221122 357799999983211 01123456
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcC---CCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELD---VSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~---~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~ 462 (536)
.+|++++|+|++++.+......+...+..+. ..+.|+++|+||+|+....+ ..........+++++||++|.
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~ 151 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNH 151 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCC
Confidence 7999999999999877666555555555442 25689999999999965321 111122234679999999999
Q ss_pred CHHHHHHHHHHH
Q 009371 463 GLDEFCSAVQEK 474 (536)
Q Consensus 463 GIdeL~~~I~~~ 474 (536)
|+++++++|.+.
T Consensus 152 ~v~~~f~~l~~~ 163 (165)
T cd04140 152 NVQELFQELLNL 163 (165)
T ss_pred CHHHHHHHHHhc
Confidence 999999998753
No 57
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.77 E-value=1.1e-17 Score=153.21 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=99.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|++|||||||+|++++..+... ...+..+.....+.+ ++. .+.+|||+|..+ +.. ....+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~---------~~~l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEE---------YSAMRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC-cCCcchheEEEEEEE-CCEEEEEEEEECCCCcc---------hHHHHHHHH
Confidence 3699999999999999999998654322 111111112222333 443 466899999722 221 12345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHH-HHHhhcCCCCCCEEEEEEcCCCCCChh----HHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVD-KVLSELDVSSIPKLMIWNKVDKVCDPQ----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~-~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|.++..+......+. .++......+.|+++|+||+|+..... ..........+++++||++|.|+
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGV 150 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCH
Confidence 6799999999998866554444333 333333345789999999999875321 11122233568999999999999
Q ss_pred HHHHHHHHHHh
Q 009371 465 DEFCSAVQEKL 475 (536)
Q Consensus 465 deL~~~I~~~l 475 (536)
++++++|.+.+
T Consensus 151 ~~l~~~l~~~~ 161 (162)
T cd04138 151 EEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 58
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.77 E-value=1.6e-17 Score=153.05 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=101.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHh-HHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRAT-LEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~t-l~ei 389 (536)
++|+++|.+|||||||++++.+..+.. ....++.+.....+.. ++. .+.+|||||..+ |... -..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQ---------FTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCchhhhEEEEEEE-CCEEEEEEEEECCCccc---------cchHHHHHh
Confidence 469999999999999999999765432 1111111222233444 443 456899999722 2221 2235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+.+....+...+... ...+.|+++|+||+|+..... ..........+++++||++|.|
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKIN 150 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 7899999999999876655554443333332 345789999999999865321 1111222346899999999999
Q ss_pred HHHHHHHHHHHh
Q 009371 464 LDEFCSAVQEKL 475 (536)
Q Consensus 464 IdeL~~~I~~~l 475 (536)
+++++++|.+.+
T Consensus 151 v~~l~~~l~~~~ 162 (163)
T cd04136 151 VDEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 59
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.77 E-value=1.7e-17 Score=153.07 Aligned_cols=152 Identities=21% Similarity=0.222 Sum_probs=102.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||... ........+..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQER--------FRTLTSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchh--------hhhhhHHHhCC
Confidence 5899999999999999999987654332222222222233333 33 4678999999621 11112334578
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCCh----hHHHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDP----QKVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~----~~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++.+.+....+...+... ...+.|+++|+||+|+.... +..........+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHH
Confidence 99999999999876655554443333333 34578999999999997322 12222233467899999999999999
Q ss_pred HHHHHHHH
Q 009371 467 FCSAVQEK 474 (536)
Q Consensus 467 L~~~I~~~ 474 (536)
+++.+.+.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd01863 153 AFEELVEK 160 (161)
T ss_pred HHHHHHHh
Confidence 99998765
No 60
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.77 E-value=1.5e-17 Score=153.13 Aligned_cols=148 Identities=23% Similarity=0.279 Sum_probs=96.6
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhcc
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESS 393 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aD 393 (536)
|+++|++|||||||+++|++...... ....|.......+. .++..+.+|||||..+ +.. ....+..+|
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~-~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~~d 70 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ-IIVPTVGFNVESFE-KGNLSFTAFDMSGQGK---------YRGLWEHYYKNIQ 70 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc-eecCccccceEEEE-ECCEEEEEEECCCCHh---------hHHHHHHHHccCC
Confidence 79999999999999999998643221 12223332222333 3667889999999722 222 223467899
Q ss_pred ceEEEEeCCCcchHHHHH-HHHHHHhhc--CCCCCCEEEEEEcCCCCCChh--HHHHHhc------cCCCEEEEeccCCC
Q 009371 394 LLVHVVDISHPLAEQQIE-AVDKVLSEL--DVSSIPKLMIWNKVDKVCDPQ--KVKLEAQ------KREDVVCISALSGN 462 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~-~v~~vL~~l--~~~~~piIvVlNKiDl~~~~~--~~~~~~~------~~~~~v~vSAktg~ 462 (536)
++++|+|++++....... .+..++... ...++|+++|+||+|+..... ....... ...+++++||++|.
T Consensus 71 ~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~ 150 (162)
T cd04157 71 GIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGE 150 (162)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence 999999999875433222 233333322 224789999999999976422 1111111 11247899999999
Q ss_pred CHHHHHHHHHH
Q 009371 463 GLDEFCSAVQE 473 (536)
Q Consensus 463 GIdeL~~~I~~ 473 (536)
|+++++++|.+
T Consensus 151 gv~~~~~~l~~ 161 (162)
T cd04157 151 GLDEGVQWLQA 161 (162)
T ss_pred chHHHHHHHhc
Confidence 99999999864
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.77 E-value=1.2e-17 Score=154.38 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=102.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|++|||||||+|++.+..+... ...++.+.....+.. ++ ..+.+|||||..+ +.. ....+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~---------~~~~~~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDD-YDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEE---------FSAMRDQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-cCCchhhhEEEEEEE-CCEEEEEEEEECCCccc---------chHHHHHHHh
Confidence 699999999999999999998654322 111122222233333 34 3567999999732 111 123357
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHH-hhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVL-SELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL-~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+|++++|+|++++.+......+...+ ......+.|+++|+||+|+..... . .........+++++||++|.|+
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 150 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNV 150 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCH
Confidence 799999999999876655544443333 333345789999999999875321 1 1122223478999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++++|.+.+.
T Consensus 151 ~~l~~~l~~~~~ 162 (164)
T smart00173 151 DEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 62
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.77 E-value=2.6e-17 Score=150.15 Aligned_cols=158 Identities=27% Similarity=0.385 Sum_probs=101.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH-HHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF-RATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f-~~tl~ei~~ 391 (536)
.+|+++|++|||||||+|+|++...........+............+..+.++||||+....... ...+ ......+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~ 82 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL-GERMVKAAWSALKD 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH-HHHHHHHHHHHHHh
Confidence 46999999999999999999987654322211111111111222345688999999985432211 1212 223455788
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH----HHHhc--cCCCEEEEeccCCCCHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV----KLEAQ--KREDVVCISALSGNGLD 465 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~----~~~~~--~~~~~v~vSAktg~GId 465 (536)
+|++++|+|++++....... +...+.. .+.|+++|+||+|+....... ..... ...+++++|++++.|++
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 158 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEF-ILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD 158 (168)
T ss_pred CCEEEEEEECCCccCchHHH-HHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChH
Confidence 99999999999874333322 2222322 267999999999998433211 11111 23689999999999999
Q ss_pred HHHHHHHHHh
Q 009371 466 EFCSAVQEKL 475 (536)
Q Consensus 466 eL~~~I~~~l 475 (536)
+++++|.+.+
T Consensus 159 ~l~~~l~~~~ 168 (168)
T cd04163 159 ELLEEIVKYL 168 (168)
T ss_pred HHHHHHHhhC
Confidence 9999997753
No 63
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.77 E-value=2e-17 Score=151.50 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=103.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|++|+|||||+|+|.+..+........+.+.....+.+ .+ ..+.+|||||.. .+.. .-..+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~---------~~~~~~~~~~~ 71 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQE---------RYHALGPIYYR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEEEEECCchH---------HHHHhhHHHhc
Confidence 6899999999999999999987654322222222222333443 33 357899999962 1221 112346
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HH-HHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KV-KLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~-~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++...+....+...+......++|+++|+||+|+..... .. ........+++++||++|.|++
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~ 151 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIE 151 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 799999999999887665555544444444444789999999999875321 11 1222345678999999999999
Q ss_pred HHHHHHHHHh
Q 009371 466 EFCSAVQEKL 475 (536)
Q Consensus 466 eL~~~I~~~l 475 (536)
+++++|.+.+
T Consensus 152 ~~~~~l~~~~ 161 (162)
T cd04123 152 ELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 64
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.77 E-value=1.5e-17 Score=153.71 Aligned_cols=147 Identities=23% Similarity=0.232 Sum_probs=99.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~a 392 (536)
+|+++|++|+|||||+++|....+. . ...|.......+.. .+..+.+|||||.. .|.. ....+..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-T--TIPTIGFNVETVTY-KNLKFQVWDLGGQT---------SIRPYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-C--cCCccCcCeEEEEE-CCEEEEEEECCCCH---------HHHHHHHHHhcCC
Confidence 3899999999999999999765442 1 12333333344444 56789999999982 2222 23346789
Q ss_pred cceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc------cCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ------KREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~------~~~~~v~vSAktg~G 463 (536)
|++++|+|++++..... .+.+..+++.....++|+++|+||+|+.... ........ ...+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 99999999988643222 2333344444344578999999999987542 22211111 113599999999999
Q ss_pred HHHHHHHHHH
Q 009371 464 LDEFCSAVQE 473 (536)
Q Consensus 464 IdeL~~~I~~ 473 (536)
+++++++|.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 65
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=1.9e-17 Score=177.82 Aligned_cols=163 Identities=29% Similarity=0.372 Sum_probs=118.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhh-HHHH--HHHhHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT-LVAA--FRATLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~-l~e~--f~~tl~ 387 (536)
..+|+++|.+|+|||||+|+|++.+.. ..+.+++|.+.....+.. ++..+.+|||||+.+..... ..+. ...++.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 457999999999999999999987543 345566666665555555 67789999999985433211 1222 234667
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH---H-HHh-----ccCCCEEEEec
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV---K-LEA-----QKREDVVCISA 458 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~---~-~~~-----~~~~~~v~vSA 458 (536)
.+..+|++++|+|++++.+.++...+..+.. .++|+++|+||+|+....... . ... ....+++++||
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 7899999999999999887776654443332 368999999999998322111 1 111 12468999999
Q ss_pred cCCCCHHHHHHHHHHHhcccc
Q 009371 459 LSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~l~~~~ 479 (536)
++|.|++++++++.+.+....
T Consensus 327 ~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999998876543
No 66
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=1.3e-17 Score=179.26 Aligned_cols=159 Identities=30% Similarity=0.327 Sum_probs=117.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
+|+++|.+|||||||+|+|++.... +.+.++.|.+.....+.+ ++..+.+|||||+..............+...+..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 3899999999999999999987643 455566677766666666 78889999999985332221122234466678899
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHH-hccCCCEEEEeccCCCCHHHHHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLE-AQKREDVVCISALSGNGLDEFCSAV 471 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~-~~~~~~~v~vSAktg~GIdeL~~~I 471 (536)
|++++|+|+..+....+.. +..++.. .++|+++|+||+|+.......... .....+++++||++|.|++++++++
T Consensus 80 d~vl~vvD~~~~~~~~d~~-i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEE-IAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred CEEEEEEeCCCCCCHHHHH-HHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHH
Confidence 9999999999877665543 3344544 368999999999987644322222 2233479999999999999999999
Q ss_pred HHHhcc
Q 009371 472 QEKLKD 477 (536)
Q Consensus 472 ~~~l~~ 477 (536)
.+.+..
T Consensus 156 ~~~l~~ 161 (429)
T TIGR03594 156 LELLPE 161 (429)
T ss_pred HHhcCc
Confidence 998854
No 67
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=1.4e-17 Score=159.43 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=103.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|.+|||||||+++|++..+.. ....++.+.....+.+ ++. .+.+|||||..+ +.. ....+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE-TYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEE---------YTALRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cCCCchHhhEEEEEEE-CCEEEEEEEEECCCchh---------hHHHHHHHHH
Confidence 38999999999999999998765432 2222222222233333 454 477899999721 221 223467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcC---CCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELD---VSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~---~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~ 462 (536)
.+|++++|+|.++..+......+...+.... ..+.|+++|+||+|+..... ..........+++++||++|.
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~ 149 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNV 149 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCC
Confidence 8999999999998776665554444443332 24689999999999864321 111112234679999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 009371 463 GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~ 478 (536)
|++++++++.+.+...
T Consensus 150 ~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 150 NVERAFYTLVRALRQQ 165 (190)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877543
No 68
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.77 E-value=1.9e-17 Score=157.59 Aligned_cols=149 Identities=24% Similarity=0.319 Sum_probs=103.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
.+|+++|++|||||||+++|.+..+. ....|..++...+.+ ++..+.++||||.. .+.. ....+..
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~-~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 86 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTI-GNIKFKTFDLGGHE---------QARRLWKDYFPE 86 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEE-CCEEEEEEECCCCH---------HHHHHHHHHhcc
Confidence 56999999999999999999986542 223455566666666 67889999999972 1222 2344678
Q ss_pred ccceEEEEeCCCcchHH-HHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc-----------------cCC
Q 009371 392 SSLLVHVVDISHPLAEQ-QIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ-----------------KRE 451 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~-~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~-----------------~~~ 451 (536)
+|++++|+|+++..... ....+..++......+.|+++|+||+|+.... +....... ...
T Consensus 87 ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeE
Confidence 99999999998764322 22333444443334578999999999986432 11211111 123
Q ss_pred CEEEEeccCCCCHHHHHHHHHHH
Q 009371 452 DVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
+++++||++|.|+++++++|.+.
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhh
Confidence 58999999999999999999765
No 69
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=2.3e-17 Score=153.26 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=104.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.++|+++|++|||||||++++++..+.....+..+.+.....+.+ ++ ..+.+|||||.. .+.. ....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~---------~~~~~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQE---------RFRSITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcH---------HHHHHHHHH
Confidence 367999999999999999999866543222222222233334444 44 357789999972 2222 2345
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---H-HH-HHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---K-VK-LEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~-~~-~~~~~~~~~v~vSAktg~G 463 (536)
+..+|++++|+|++++.+......+...++.+...+.|+++|+||+|+....+ . .. .......+++++||++|.|
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 156 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN 156 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 67899999999998876555444444445555445789999999999875322 1 11 1112236799999999999
Q ss_pred HHHHHHHHHHHh
Q 009371 464 LDEFCSAVQEKL 475 (536)
Q Consensus 464 IdeL~~~I~~~l 475 (536)
+++++++|.+.+
T Consensus 157 v~~l~~~i~~~~ 168 (169)
T cd04114 157 VEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 70
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.76 E-value=2e-17 Score=153.87 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=101.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCe--eEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPT--TRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~t--tr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
+|+++|.+|||||||++++.+..+..... .+...+ ...+.+ ++. .+.+|||+|.. .|.. ....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 69 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYKHNAKF-EGKTILVDFWDTAGQE---------RFQTMHASY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEEEEEEE-CCEEEEEEEEeCCCch---------hhhhhhHHH
Confidence 58999999999999999998765532211 111111 112223 333 56799999972 2332 2234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--HHHHhccCCCEEEEeccCCCCHHH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--VKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+..+|++++|+|++++.+..+...+...+... ..+.|+++|+||+|+...... .........+++++||++|.|+++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 70 YHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVK 148 (161)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 67899999999999877655554444434332 246899999999998543211 111222356899999999999999
Q ss_pred HHHHHHHHhcc
Q 009371 467 FCSAVQEKLKD 477 (536)
Q Consensus 467 L~~~I~~~l~~ 477 (536)
+++.+.+.+..
T Consensus 149 l~~~l~~~~~~ 159 (161)
T cd04124 149 LFQDAIKLAVS 159 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999876643
No 71
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.76 E-value=2.1e-17 Score=155.37 Aligned_cols=149 Identities=19% Similarity=0.169 Sum_probs=98.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
..+|+++|++|||||||+++|....+. .. ..|.......+.. .+..+.+|||+|.. .+.. ....+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~--~~t~g~~~~~~~~-~~~~~~l~Dt~G~~---------~~~~~~~~~~~ 75 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TT--IPTVGFNVETVTY-KNVKFNVWDVGGQD---------KIRPLWRHYYT 75 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cc--cCCcccceEEEEE-CCEEEEEEECCCCH---------HHHHHHHHHhc
Confidence 357999999999999999999865432 11 1222222333333 56789999999982 2222 223467
Q ss_pred hccceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc------cCCCEEEEeccCC
Q 009371 391 ESSLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ------KREDVVCISALSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~------~~~~~v~vSAktg 461 (536)
.+|++++|+|++++..... ...+.+++......+.|+++|+||+|+.... +....... ...+++++||++|
T Consensus 76 ~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 76 GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 8999999999998754332 2333444443334578999999999986432 22222111 1236789999999
Q ss_pred CCHHHHHHHHHH
Q 009371 462 NGLDEFCSAVQE 473 (536)
Q Consensus 462 ~GIdeL~~~I~~ 473 (536)
.|+++++++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999864
No 72
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.76 E-value=2.4e-17 Score=155.14 Aligned_cols=155 Identities=16% Similarity=0.118 Sum_probs=102.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-----------CCeeEEEeecccccccchhhHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-----------NGGEFLLTDTVGFIQKLPTTLVAA 381 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-----------~g~~i~LiDTpG~i~~lp~~l~e~ 381 (536)
.+|+++|.+|||||||++++.+..+.....+..+.+.....+.+. ....+.+|||||. +.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------~~ 75 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ---------ER 75 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh---------HH
Confidence 469999999999999999999875532222211222222233331 1246789999996 22
Q ss_pred HHH-hHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEE
Q 009371 382 FRA-TLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVV 454 (536)
Q Consensus 382 f~~-tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v 454 (536)
+.. ....+..+|++++|+|++++.+......+...+... ...+.|+++|+||+|+..... ..........+++
T Consensus 76 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 76 FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 322 334567899999999999876655554443333322 224679999999999865321 1112222346899
Q ss_pred EEeccCCCCHHHHHHHHHHHhc
Q 009371 455 CISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~ 476 (536)
++||++|.|+++++++|.+.+.
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 73
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.76 E-value=2.3e-17 Score=153.57 Aligned_cols=147 Identities=21% Similarity=0.203 Sum_probs=97.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~a 392 (536)
+|+++|.+|||||||++++....+. . ..+|+......+.. +...+.+|||||+. .+.. ....+..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~--~~pt~g~~~~~~~~-~~~~~~l~D~~G~~---------~~~~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQD---------KIRPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-c--cCCCCCcceEEEEE-CCEEEEEEECCCCH---------hHHHHHHHHhcCC
Confidence 5899999999999999999755442 2 12333333333444 56788999999982 2222 22346889
Q ss_pred cceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HH-HHHhc-----cCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KV-KLEAQ-----KREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~-~~~~~-----~~~~~v~vSAktg~G 463 (536)
|++++|+|+++..+..+.. .+..++..-...+.|+++|+||+|+..... .. ..... ....++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998865433322 233333332334689999999999865321 11 11111 122467899999999
Q ss_pred HHHHHHHHHH
Q 009371 464 LDEFCSAVQE 473 (536)
Q Consensus 464 IdeL~~~I~~ 473 (536)
+++++++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999853
No 74
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.76 E-value=2.2e-17 Score=152.15 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=101.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe---CCeeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK---NGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~---~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
+|+++|.+|+|||||++++++..+.....+..+.+.....+.+. ....+.+|||||. +.+.. ....+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~ 72 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ---------EEFDAITKAYY 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch---------HHHHHhHHHHh
Confidence 59999999999999999999875532222222222222333332 2346889999996 22222 23456
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+.. ...+.|+++|+||+|+..... . .........+++++||++|.|+
T Consensus 73 ~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (162)
T cd04106 73 RGAQACILVFSTTDRESFEAIESWKEKVEA-ECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151 (162)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 789999999999987665554444333332 234789999999999875321 1 1122233568999999999999
Q ss_pred HHHHHHHHHH
Q 009371 465 DEFCSAVQEK 474 (536)
Q Consensus 465 deL~~~I~~~ 474 (536)
++++++|...
T Consensus 152 ~~l~~~l~~~ 161 (162)
T cd04106 152 TELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 75
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.76 E-value=2.9e-17 Score=152.62 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=101.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|++|||||||+|+|.+..+........+.+.....+.+ .+. .+.+|||||... +.. ....+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~---------~~~~~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER---------FQSLGVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH---------HHhHHHHHhc
Confidence 6999999999999999999987654322222222233344444 333 456999999721 221 223467
Q ss_pred hccceEEEEeCCCcchHHHHHHHH-HHHhhcC---CCCCCEEEEEEcCCCCCCh----hHHH-HHhcc-CCCEEEEeccC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVD-KVLSELD---VSSIPKLMIWNKVDKVCDP----QKVK-LEAQK-REDVVCISALS 460 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~-~vL~~l~---~~~~piIvVlNKiDl~~~~----~~~~-~~~~~-~~~~v~vSAkt 460 (536)
.+|++++|+|++++.+......+. .++.... ..++|+++|+||+|+..+. +... ..... ..+++++||++
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCC
Confidence 899999999998876544443332 2333332 2378999999999997321 1111 11222 36899999999
Q ss_pred CCCHHHHHHHHHHHhcc
Q 009371 461 GNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 461 g~GIdeL~~~I~~~l~~ 477 (536)
|.|+++++++|.+.+..
T Consensus 152 ~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 152 AINVEQAFETIARKALE 168 (172)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999886654
No 76
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=2.2e-17 Score=159.49 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=104.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|.+|||||||++++++..+.....+....+.....+.+.++ ..+.+|||||.. .+.. ....+.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~~ 72 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE---------RFGGMTRVYYR 72 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch---------hhhhhHHHHhC
Confidence 6899999999999999999987553322222222223334444313 357899999972 2222 233467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhc----CCCCCCEEEEEEcCCCCCC----hhHHHH-HhccC-CCEEEEeccC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSEL----DVSSIPKLMIWNKVDKVCD----PQKVKL-EAQKR-EDVVCISALS 460 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l----~~~~~piIvVlNKiDl~~~----~~~~~~-~~~~~-~~~v~vSAkt 460 (536)
.+|++++|+|++++.+.+....+...+... ...++|+++|+||+|+.+. .+.... ..... .+++++||++
T Consensus 73 ~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 152 (201)
T cd04107 73 GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKE 152 (201)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCC
Confidence 899999999999987665554443333221 2357899999999999632 111222 12223 5799999999
Q ss_pred CCCHHHHHHHHHHHhccc
Q 009371 461 GNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 461 g~GIdeL~~~I~~~l~~~ 478 (536)
|.|+++++++|.+.+...
T Consensus 153 ~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 153 GINIEEAMRFLVKNILAN 170 (201)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999877654
No 77
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.76 E-value=2.8e-17 Score=148.88 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=101.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
+|+++|++|||||||+|+|.+..+........+.+.....+... ....+.+|||||... ........+..+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~ 73 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER--------FRSITPSYYRGA 73 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH--------HHHHHHHHhcCC
Confidence 58999999999999999999876654322222222223333331 235788999999721 111233446779
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCCCHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
|++++|+|++++........+...+......+.|+++|+||+|+.... +. .........+++.+||++|.|++++
T Consensus 74 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 74 HGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEEL 153 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 999999999986554444444444444333568999999999996221 11 1122234678999999999999999
Q ss_pred HHHHH
Q 009371 468 CSAVQ 472 (536)
Q Consensus 468 ~~~I~ 472 (536)
+++|.
T Consensus 154 ~~~i~ 158 (159)
T cd00154 154 FQSLA 158 (159)
T ss_pred HHHHh
Confidence 99885
No 78
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.76 E-value=2e-17 Score=152.35 Aligned_cols=147 Identities=24% Similarity=0.270 Sum_probs=98.3
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhcc
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESS 393 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aD 393 (536)
|+++|++|||||||++++.+..+.. . .+|.......+....+..+.+|||||.. .+.. ....+..+|
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~-~--~~t~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~~~~~ 69 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVT-T--IPTVGFNVEMLQLEKHLSLTVWDVGGQE---------KMRTVWKCYLENTD 69 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-c--cCccCcceEEEEeCCceEEEEEECCCCH---------hHHHHHHHHhccCC
Confidence 8999999999999999999876531 1 2233333344444445688999999972 1222 223467899
Q ss_pred ceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHh--c-----cCCCEEEEeccCCCC
Q 009371 394 LLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEA--Q-----KREDVVCISALSGNG 463 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~--~-----~~~~~v~vSAktg~G 463 (536)
++++|+|++++...... ..+..++......+.|+++|+||+|+.... ....... . ...+++++||++|+|
T Consensus 70 ~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 70 GLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence 99999999987533322 233444443333578999999999986431 2121111 1 123588999999999
Q ss_pred HHHHHHHHHH
Q 009371 464 LDEFCSAVQE 473 (536)
Q Consensus 464 IdeL~~~I~~ 473 (536)
+++++++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999853
No 79
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.1e-17 Score=158.53 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=122.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.++|.|+|..|+|||.|+.++.+..+.........+|...+.+.+ +|. ++.+|||+|+ +.|++ +..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQ---------ERFrtit~sy 78 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQ---------ERFRTITSSY 78 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeecccc---------HHHhhhhHhh
Confidence 468999999999999999999988775444444556777788877 554 6789999998 55665 6678
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCC-EEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKRED-VVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~-~v~vSAktg~ 462 (536)
++.|++||+|+|++...+...+..|..-+......++|.++|+||||+.+.. +........+.+ ++++|||++.
T Consensus 79 YR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 79 YRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred ccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 8999999999999997666655555444555556778999999999997642 222223334556 9999999999
Q ss_pred CHHHHHHHHHHHhcccc
Q 009371 463 GLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~~ 479 (536)
|+++.|..|...+...+
T Consensus 159 NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQRK 175 (205)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999998887654
No 80
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.76 E-value=3.7e-17 Score=151.59 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=101.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||+++++...+. .....++.+.....+.+ ++. .+.+|||||... +.. ....+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQ---------FTAMRDLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEE-CCEEEEEEEEECCCccc---------chhHHHHHH
Confidence 36999999999999999999865332 22221211222233444 443 456999999722 221 12246
Q ss_pred HhccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|.++..+.+....+ ..++......+.|+++|+||+|+..... . .........+++++||++|.|
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKIN 150 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence 789999999999887655544433 3333333446789999999999975321 1 111222346899999999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
+++++.+|.+.+.
T Consensus 151 v~~~~~~l~~~l~ 163 (164)
T cd04175 151 VNEIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 81
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=3.7e-17 Score=155.81 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=104.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHH-HhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFR-ATLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~-~tl~ei~ 390 (536)
+|+++|.+|||||||++++.+..+.....+..+.+.....+.+ ++. .+.+|||+|.. .+. .....+.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~---------~~~~~~~~~~~ 71 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQE---------RFRSLNNSYYR 71 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcH---------HHHhhHHHHcc
Confidence 6999999999999999999987654222222222222233444 333 56799999962 122 2234467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+..... . .........+++++||++|.|++
T Consensus 72 ~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~ 151 (188)
T cd04125 72 GAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVE 151 (188)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 899999999999876655554444444444344689999999999874321 1 11122234589999999999999
Q ss_pred HHHHHHHHHhccc
Q 009371 466 EFCSAVQEKLKDS 478 (536)
Q Consensus 466 eL~~~I~~~l~~~ 478 (536)
++++++.+.+...
T Consensus 152 ~~f~~l~~~~~~~ 164 (188)
T cd04125 152 EAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877643
No 82
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=3.2e-17 Score=176.56 Aligned_cols=157 Identities=31% Similarity=0.345 Sum_probs=113.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH-HHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF-RATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f-~~tl~ei~ 390 (536)
++|+++|.+|||||||+|+|++.... +.+.++.|.+.....+.+ ++..+.+|||||+..... .....+ ..+...+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~~-~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDDD-GFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcch-hHHHHHHHHHHHHHH
Confidence 67999999999999999999987653 455566666666666666 678999999999965222 122222 33556678
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhc-cCCCEEEEeccCCCCHHHHHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQ-KREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~-~~~~~v~vSAktg~GIdeL~~ 469 (536)
.+|++++|+|++++....+... ..++... ++|+++|+||+|+............ ....++++||++|.|++++++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~-~~~l~~~---~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEI-AKILRKS---NKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLD 155 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHH-HHHHHHc---CCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHH
Confidence 9999999999998766554433 3445543 6899999999997653322222222 233589999999999999999
Q ss_pred HHHHHh
Q 009371 470 AVQEKL 475 (536)
Q Consensus 470 ~I~~~l 475 (536)
+|.+..
T Consensus 156 ~I~~~~ 161 (435)
T PRK00093 156 AILEEL 161 (435)
T ss_pred HHHhhC
Confidence 998744
No 83
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.75 E-value=5.1e-17 Score=153.67 Aligned_cols=151 Identities=22% Similarity=0.198 Sum_probs=99.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHh-HHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRAT-LEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~t-l~ei~~ 391 (536)
.+|+++|.+|||||||++++....+. . ...|.......+.. .+..+.+|||||.. .+... ...+..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~-~--~~~t~~~~~~~~~~-~~~~l~l~D~~G~~---------~~~~~~~~~~~~ 80 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESV-T--TIPTIGFNVETVTY-KNISFTVWDVGGQD---------KIRPLWRHYYTN 80 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC-C--cCCccccceEEEEE-CCEEEEEEECCCCh---------hhHHHHHHHhCC
Confidence 57999999999999999999644331 1 11233222233444 56788999999972 22222 234688
Q ss_pred ccceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc------cCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ------KREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~------~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++.+.+. .+.+..++......+.|+++|+||+|+.... ..+..... ....++++||++|.
T Consensus 81 ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 81 TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 999999999998754332 2333444443333568999999999986532 11111111 11246689999999
Q ss_pred CHHHHHHHHHHHhc
Q 009371 463 GLDEFCSAVQEKLK 476 (536)
Q Consensus 463 GIdeL~~~I~~~l~ 476 (536)
|+++++++|.+.+.
T Consensus 161 gv~e~~~~l~~~~~ 174 (175)
T smart00177 161 GLYEGLTWLSNNLK 174 (175)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 84
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.75 E-value=4.4e-17 Score=151.63 Aligned_cols=151 Identities=23% Similarity=0.231 Sum_probs=101.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|++|+|||||++++.+..+.....+....+.....+.+ ++ ..+.+|||+|.. .+.. ....+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~---------~~~~~~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQE---------RYQTITKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcH---------hHHhhHHHHhc
Confidence 5899999999999999999977654222121111222233444 34 356799999972 1221 223467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+.+....+...+......+.|+++|+||+|+..... ..........+++++||++|.|++
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 151 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIK 151 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 899999999999876655554443333333334689999999999865321 111222245789999999999999
Q ss_pred HHHHHHHHH
Q 009371 466 EFCSAVQEK 474 (536)
Q Consensus 466 eL~~~I~~~ 474 (536)
+++.+|.+.
T Consensus 152 ~~f~~l~~~ 160 (161)
T cd04117 152 ESFTRLTEL 160 (161)
T ss_pred HHHHHHHhh
Confidence 999999764
No 85
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.75 E-value=3.7e-17 Score=150.29 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=101.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|++|||||||++++++..+. .+...++.+........ ++ ..+.+|||||.... ..+ ....+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~------~~~--~~~~~~~ 71 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-DGEDVQLNILDTAGQEDY------AAI--RDNYHRS 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEE-CCEEEEEEEEECCChhhh------hHH--HHHHhhc
Confidence 6999999999999999999976543 22222222333333333 43 36789999997221 111 2234577
Q ss_pred ccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCCCHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
+|++++|+|.+++.+......+ ..++......++|+++|+||+|+.... .. .........+++++||++|.|++
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 72 GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVE 151 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHH
Confidence 8999999999887554333333 223332223579999999999997621 11 12222344789999999999999
Q ss_pred HHHHHHHHHhc
Q 009371 466 EFCSAVQEKLK 476 (536)
Q Consensus 466 eL~~~I~~~l~ 476 (536)
+++++|.+.+.
T Consensus 152 ~l~~~l~~~~~ 162 (164)
T cd04139 152 KAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 86
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.75 E-value=1.4e-17 Score=159.48 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=106.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccccc------------------ccccccCCeeEEEE-EeCCeeEEEeecccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAED------------------RLFATLDPTTRRVQ-MKNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~------------------~~~~Tld~ttr~i~-l~~g~~i~LiDTpG~i~ 372 (536)
...|+++|+.++|||||+++|++....... ....|.+.....+. ..++..+.++||||+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-- 80 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-- 80 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS--
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc--
Confidence 347999999999999999999854321111 11223344444444 137789999999998
Q ss_pred cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--H---HH-HH
Q 009371 373 KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--K---VK-LE 446 (536)
Q Consensus 373 ~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~---~~-~~ 446 (536)
..+...+...+..+|++++|+|+..+...+..+.+..+ .. .++|+++|+||+|+....- . .. ..
T Consensus 81 ------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~-~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 81 ------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKIL-RE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKL 150 (188)
T ss_dssp ------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHH-HH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHH
T ss_pred ------cceeecccceecccccceeeeecccccccccccccccc-cc---cccceEEeeeeccchhhhHHHHHHHHHHHh
Confidence 33445566778899999999999988776665554433 33 3789999999999983211 0 11 01
Q ss_pred ----hcc---CCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 447 ----AQK---REDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 447 ----~~~---~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
... ..|++++||++|.|+++|+++|.+.++
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 011 357999999999999999999998775
No 87
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.75 E-value=5.1e-17 Score=150.25 Aligned_cols=152 Identities=16% Similarity=0.255 Sum_probs=99.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCc-ccccccccc-ccCCeeEEEEEeC--CeeEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT-VLAEDRLFA-TLDPTTRRVQMKN--GGEFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~-~~~~~~~~~-Tld~ttr~i~l~~--g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
+|+++|++|||||||+++|.+.. ....++..+ ..+.....+.+.+ ...+.+|||||. +.+.. ....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~---------~~~~~~~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ---------ELYSDMVSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH---------HHHHHHHHHH
Confidence 58999999999999999998531 222222211 1222223333322 257889999996 11222 2234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~G 463 (536)
+..+|++++|+|.+++.+......+...+.... .+.|+++|+||+|+..... . .........+++++||++|.|
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVG 151 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 578999999999998765554444433333322 4689999999999865421 1 111222346799999999999
Q ss_pred HHHHHHHHHHHh
Q 009371 464 LDEFCSAVQEKL 475 (536)
Q Consensus 464 IdeL~~~I~~~l 475 (536)
++++++.|.+.+
T Consensus 152 i~~l~~~l~~~~ 163 (164)
T cd04101 152 YEEPFESLARAF 163 (164)
T ss_pred hHHHHHHHHHHh
Confidence 999999998764
No 88
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.75 E-value=3e-17 Score=153.97 Aligned_cols=153 Identities=22% Similarity=0.164 Sum_probs=101.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
+|+++|.+|||||||+++|++..+. . ...|.......+.. ++..+.+|||||.... .......+..+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~-~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~--------~~~~~~~~~~ad 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q-PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL--------RPLWKHYYLNTQ 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C-cCCcCceeEEEEEE-CCEEEEEEECCCChhc--------chHHHHHhccCC
Confidence 3889999999999999999986432 1 23333333333444 6678999999997321 111223457899
Q ss_pred ceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhcc-------CCCEEEEeccCCCC
Q 009371 394 LLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQK-------REDVVCISALSGNG 463 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~~-------~~~~v~vSAktg~G 463 (536)
++++|+|++++.+.... ..+..++......+.|+++|+||+|+.... +........ ...++++||++|.|
T Consensus 69 ~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 69 AVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 99999999987543332 223334433334468999999999986532 212121111 12577899999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
+++++++|.+.+...
T Consensus 149 v~~~f~~l~~~~~~~ 163 (169)
T cd04158 149 LYEGLDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998876554
No 89
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.75 E-value=4.2e-17 Score=153.21 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=96.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccc-----cc----------ccccCCeeEEEEE----eCCeeEEEeecccccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAED-----RL----------FATLDPTTRRVQM----KNGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~-----~~----------~~Tld~ttr~i~l----~~g~~i~LiDTpG~i~~l 374 (536)
.|+++|++|+|||||+++|++......+ .. ..+.......+.+ ..+..+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 4899999999999999999864211100 00 1122222222222 1234678999999832
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-H-HHHH-hccC-
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-K-VKLE-AQKR- 450 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~-~~~~-~~~~- 450 (536)
....+...+..+|++++|+|++++....+...+..... .++|+++|+||+|+..... . .... ....
T Consensus 80 ------~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~ 149 (179)
T cd01890 80 ------FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL 149 (179)
T ss_pred ------hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC
Confidence 11223345678999999999998765555554433322 3689999999999864321 1 1111 1111
Q ss_pred --CCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 451 --EDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 451 --~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
.+++++||++|.|+++|+++|.+.+.
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 25899999999999999999987653
No 90
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=6.8e-17 Score=174.06 Aligned_cols=162 Identities=27% Similarity=0.374 Sum_probs=115.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhh-HHHH--HHHhHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT-LVAA--FRATLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~-l~e~--f~~tl~ 387 (536)
..+|+++|++|+|||||+|+|++.+.. +.+.+++|.+.....+.. ++..+.++||||+.+..... ..+. ...++.
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 468999999999999999999987532 334444444443333433 77889999999986543221 1222 234667
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--HHHH------hccCCCEEEEecc
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--VKLE------AQKREDVVCISAL 459 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~~~~------~~~~~~~v~vSAk 459 (536)
.+..+|++++|+|++.+.+.++...+..+.. .++|+++|+||+|+.+.... .... .....+++++||+
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence 7889999999999999887776654433332 36899999999999854221 1111 1134689999999
Q ss_pred CCCCHHHHHHHHHHHhccc
Q 009371 460 SGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~~ 478 (536)
+|.|++++++.+.+.+...
T Consensus 328 ~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 328 TGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877654
No 91
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.75 E-value=4.7e-17 Score=153.12 Aligned_cols=149 Identities=26% Similarity=0.253 Sum_probs=102.0
Q ss_pred EEEEccCCCChHHHHHhhhCCcccccc----------------ccccccCCeeEEEEEeCCeeEEEeecccccccchhhH
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAED----------------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTL 378 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~----------------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l 378 (536)
|+++|.+|||||||+|+|++....... ....+.+.....+.+ .+..+.++||||+.+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~------ 74 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED------ 74 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH------
Confidence 899999999999999999876543221 111233333333443 467899999999732
Q ss_pred HHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------HHHHh-----
Q 009371 379 VAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------VKLEA----- 447 (536)
Q Consensus 379 ~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------~~~~~----- 447 (536)
........+..+|++++|+|++++......+.+.. +.. .++|+++|+||+|+...... .....
T Consensus 75 --~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (189)
T cd00881 75 --FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRI-ARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGF 148 (189)
T ss_pred --HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHH-HHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccc
Confidence 11223445678999999999988765544433322 222 47899999999999863211 11111
Q ss_pred ----------ccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 448 ----------QKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 448 ----------~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
....+++++||++|.|+++++++|.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 149 ISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 12468999999999999999999998764
No 92
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.75 E-value=4.3e-17 Score=153.80 Aligned_cols=148 Identities=22% Similarity=0.214 Sum_probs=101.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
.+|+++|++|+|||||+++|++..+.. ...|...+...+.+ ++..+.+|||||+. .+.. ....+..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 82 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVEEIVY-KNIRFLMWDIGGQE---------SLRSSWNTYYTN 82 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEE-CCeEEEEEECCCCH---------HHHHHHHHHhhc
Confidence 469999999999999999998765431 12344444444544 57789999999982 2222 2234678
Q ss_pred ccceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHh------ccCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEA------QKREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~------~~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++..... .+.+..++...+..+.|+++|+||+|+.... +...... ....+++++||++|.
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 999999999988654322 2334444444444578999999999986532 2221111 122368999999999
Q ss_pred CHHHHHHHHHH
Q 009371 463 GLDEFCSAVQE 473 (536)
Q Consensus 463 GIdeL~~~I~~ 473 (536)
|+++++++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 93
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=4.3e-17 Score=155.51 Aligned_cols=150 Identities=22% Similarity=0.262 Sum_probs=103.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.+|+++|.+|||||||+|++.+..+.. ..+|..++...+.. ++..+.++||||.... .......+..+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~--------~~~~~~~~~~a 85 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEELAI-GNIKFTTFDLGGHQQA--------RRLWKDYFPEV 85 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEEEEE-CCEEEEEEECCCCHHH--------HHHHHHHhCCC
Confidence 569999999999999999999865431 12345555555555 6778999999998221 11122346789
Q ss_pred cceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCC--hhHHHHHhc-------------cCCCEEEE
Q 009371 393 SLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCD--PQKVKLEAQ-------------KREDVVCI 456 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~--~~~~~~~~~-------------~~~~~v~v 456 (536)
|++++|+|++++...... ..+..++......+.|+++|+||+|+... .+.+..... ....++++
T Consensus 86 d~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~ 165 (184)
T smart00178 86 NGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMC 165 (184)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEe
Confidence 999999999887543222 23344444333457899999999998643 222222110 12348999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 009371 457 SALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~ 474 (536)
||++|.|++++++||.+.
T Consensus 166 Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 166 SVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ecccCCChHHHHHHHHhh
Confidence 999999999999999764
No 94
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.75 E-value=4e-17 Score=154.11 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=106.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCC-eeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP-TTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~-ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.+|+++|.+|||||||++++.+..+... ...|... ....+.+ ++. .+.+|||||... |.. ....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~--~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~l~~~~ 70 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDY--HDPTIEDAYKQQARI-DNEPALLDILDTAGQAE---------FTAMRDQY 70 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC--cCCcccceEEEEEEE-CCEEEEEEEEeCCCchh---------hHHHhHHH
Confidence 3699999999999999999987665321 1122221 1223344 453 577999999722 222 2234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcC-CCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELD-VSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~-~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~ 462 (536)
+..+|++++|+|++++.+......+...+.... ..+.|+++|+||+|+.... +..........+++++||++|.
T Consensus 71 ~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 150 (172)
T cd04141 71 MRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRH 150 (172)
T ss_pred hhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCC
Confidence 678999999999999887776665555565543 3578999999999986432 1122222345789999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
||++++++|.+.+..
T Consensus 151 ~v~~~f~~l~~~~~~ 165 (172)
T cd04141 151 YIDDAFHGLVREIRR 165 (172)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999876654
No 95
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.75 E-value=7.1e-17 Score=155.91 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=103.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
..+|+++|++|||||||++++.+..+.....+..+.+.....+.+ ++ ..+.+|||||.. .+.. ....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~---------~~~~~~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQE---------RFRTITSTY 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCch---------hHHHHHHHH
Confidence 468999999999999999999987653221121112222233333 33 367799999972 1222 2334
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
+..+|++++|+|++++.+.+....+...+... ....|+++|+||+|+..... ..........+++++||++|.|
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~g 154 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN 154 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcC
Confidence 57799999999999876555444333333332 24689999999999875321 1112223357899999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009371 464 LDEFCSAVQEKLKD 477 (536)
Q Consensus 464 IdeL~~~I~~~l~~ 477 (536)
|++++++|...+..
T Consensus 155 i~~lf~~l~~~~~~ 168 (199)
T cd04110 155 VEEMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
No 96
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.75 E-value=3.9e-17 Score=153.04 Aligned_cols=153 Identities=20% Similarity=0.179 Sum_probs=101.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE-eCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM-KNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l-~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
+|+++|++|||||||+++++...+... ...|.........+ .++ ..+.+|||+|.... ..+ .-..+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~------~~~~~~ 71 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF--GGL------RDGYYI 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCCChhh--ccc------cHHHhc
Confidence 699999999999999999986543221 12233222222222 122 46789999997321 111 112356
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
.+|++++|+|++++.+.+....+...+.... .+.|+++|+||+|+..... ..........+++++||++|.|++++
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 72 GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-GNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKP 150 (166)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHH
Confidence 7999999999998876655554444443332 2799999999999864321 11122234567999999999999999
Q ss_pred HHHHHHHhcc
Q 009371 468 CSAVQEKLKD 477 (536)
Q Consensus 468 ~~~I~~~l~~ 477 (536)
+++|.+.+..
T Consensus 151 f~~l~~~~~~ 160 (166)
T cd00877 151 FLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=7.1e-17 Score=153.96 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=101.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
.+|+++|..|||||||++++....+. . ...|.......+.. ++..+.+|||||. +.+.. ....+..
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~-~--~~pt~g~~~~~~~~-~~~~~~i~D~~Gq---------~~~~~~~~~~~~~ 84 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQ---------DKIRPLWRHYFQN 84 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc-c--ccCCcceeEEEEEE-CCEEEEEEECCCC---------HHHHHHHHHHhcc
Confidence 47999999999999999999865432 1 12233333333444 5678999999997 22332 2334688
Q ss_pred ccceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--HHHHhccC------CCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--VKLEAQKR------EDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~~~~~~~~------~~~v~vSAktg~ 462 (536)
+|++++|+|++++..... ...+..++......+.|+++|+||+|+...... ........ ..++++||++|+
T Consensus 85 a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCC
Confidence 999999999998754332 223333433323357899999999998754322 11111111 135579999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 165 gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 165 GLYEGLDWLSNNIAN 179 (181)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887654
No 98
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.75 E-value=5e-17 Score=150.37 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=101.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHh-HHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRAT-LEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~t-l~ei 389 (536)
.+|+++|.+|||||||++++.+..+... ...+..+.....+.+ ++. .+.+|||||..+ |... ...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQ---------FASMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchhheEEEEEEE-CCEEEEEEEEECCCccc---------ccchHHHHH
Confidence 3699999999999999999987655322 111111222334444 444 466899999722 1111 1235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+..+...+...+... ...++|+++|+||+|+..... ..........+++++||++|.|
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTM 150 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 7899999999999876655554444444433 335789999999999864321 1111122346889999999999
Q ss_pred HHHHHHHHHHHh
Q 009371 464 LDEFCSAVQEKL 475 (536)
Q Consensus 464 IdeL~~~I~~~l 475 (536)
+++++.++.+.+
T Consensus 151 v~~l~~~l~~~l 162 (163)
T cd04176 151 VNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 99
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.74 E-value=6.5e-17 Score=155.81 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=107.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHh-HHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRAT-LEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~t-l~ei 389 (536)
.+|+++|..|||||||++++.+..+.....+..+.+.....+.+ ++ ..+.+|||+|. +.+... ...+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~---------~~~~~l~~~~~ 76 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQ---------GRFCTIFRSYS 76 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCc---------HHHHHHHHHHh
Confidence 47999999999999999999976543221111222222333444 44 36779999998 223332 2345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+.+....+...+... ..+.|+|+|+||+|+.... +. .........+++++||++|.|+
T Consensus 77 ~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V 155 (189)
T cd04121 77 RGAQGIILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNI 155 (189)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 7899999999999988777666554444433 2578999999999986421 11 1222234568999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
+++|++|.+.+...
T Consensus 156 ~~~F~~l~~~i~~~ 169 (189)
T cd04121 156 TESFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999866543
No 100
>PLN03110 Rab GTPase; Provisional
Probab=99.74 E-value=5.3e-17 Score=159.18 Aligned_cols=155 Identities=21% Similarity=0.194 Sum_probs=109.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|++|||||||+++|.+..+.....+....+.....+.+ ++ ..+.+|||+|.. .|.. ....+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 82 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQE---------RYRAITSAYY 82 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 57999999999999999999987654333333333334455554 34 367899999972 2222 23346
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+.+....+...+......+.|+++|+||+|+..... ..........+++++||++|.|+
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 7899999999999876666555554444444345789999999999854321 11122234578999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
++++++|...+..
T Consensus 163 ~~lf~~l~~~i~~ 175 (216)
T PLN03110 163 EKAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887755
No 101
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.74 E-value=9.2e-17 Score=150.04 Aligned_cols=149 Identities=23% Similarity=0.276 Sum_probs=99.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
..+|+++|++|||||||+++|++..+.. ...|.......+.+ ++..+.+|||||.. .+.. ....+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~-~~~~~~~~D~~G~~---------~~~~~~~~~~~ 80 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQS-DGFKLNVWDIGGQR---------AIRPYWRNYFE 80 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEE-CCEEEEEEECCCCH---------HHHHHHHHHhc
Confidence 4579999999999999999999864421 11222223335555 67889999999972 1222 223357
Q ss_pred hccceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHhc------cCCCEEEEeccCC
Q 009371 391 ESSLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEAQ------KREDVVCISALSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~~------~~~~~v~vSAktg 461 (536)
.+|++++|+|+++...... ...+..+++.....++|+++|+||+|+..... ....... ...+++++||++|
T Consensus 81 ~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 81 NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCC
Confidence 8899999999987543322 22333344433345789999999999876432 1111111 1124789999999
Q ss_pred CCHHHHHHHHHH
Q 009371 462 NGLDEFCSAVQE 473 (536)
Q Consensus 462 ~GIdeL~~~I~~ 473 (536)
+|++++++||.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999864
No 102
>PRK04213 GTP-binding protein; Provisional
Probab=99.74 E-value=3.7e-17 Score=157.27 Aligned_cols=157 Identities=28% Similarity=0.394 Sum_probs=99.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeeccccc--ccchhhHHHHHHHh----
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFI--QKLPTTLVAAFRAT---- 385 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i--~~lp~~l~e~f~~t---- 385 (536)
.++|+++|++|||||||+|+|++..+.....++.|.... .+.+ ..+.+|||||+. ...+....+.++..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~--~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN--HYDW---GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCce--EEee---cceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 468999999999999999999987765444444444332 2222 268999999962 22222222334332
Q ss_pred HH-HHHhccceEEEEeCCCcch-----------HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HH---HHHhcc
Q 009371 386 LE-EISESSLLVHVVDISHPLA-----------EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KV---KLEAQK 449 (536)
Q Consensus 386 l~-ei~~aDliLlVvD~s~~~~-----------~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~---~~~~~~ 449 (536)
+. .+..++++++|+|.+.... ..+ ..+...+. ..++|+++|+||+|+..... .. ......
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPID-VEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHH-HHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 11 2345689999999865311 011 11222222 24789999999999975431 11 111111
Q ss_pred -------CCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 450 -------REDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 450 -------~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
..+++++||++| |+++++++|.+.+...
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 125899999999 9999999999887653
No 103
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.74 E-value=7.4e-17 Score=148.47 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=101.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~a 392 (536)
+|+++|.+|||||||++++++.... ....|...+...+.+ ++..+.+|||||... +.. ....+..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEY-KNVSFTVWDVGGQDK---------IRPLWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEEEEE-CCEEEEEEECCCChh---------hHHHHHHHhccC
Confidence 3899999999999999999987632 123344444444554 567899999999732 111 22345789
Q ss_pred cceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHH-h-----ccCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLE-A-----QKREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~-~-----~~~~~~v~vSAktg~G 463 (536)
|++++|+|++++..... ...+..++......+.|+++|+||+|+..... ..... . ....+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 99999999998754333 23334444444446789999999999876431 11111 1 1234799999999999
Q ss_pred HHHHHHHHHH
Q 009371 464 LDEFCSAVQE 473 (536)
Q Consensus 464 IdeL~~~I~~ 473 (536)
+++++++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 104
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=4.7e-17 Score=156.08 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=102.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCc-------cccccccccccCCeeEEEEEe-------------CCeeEEEeeccccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT-------VLAEDRLFATLDPTTRRVQMK-------------NGGEFLLTDTVGFIQK 373 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~-------~~~~~~~~~Tld~ttr~i~l~-------------~g~~i~LiDTpG~i~~ 373 (536)
.|+++|++|+|||||+++|++.. ...+.....|.+.....+.+. .+..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 58999999999999999998731 111222234455444444432 15688999999982
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HHHH----
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VKLE---- 446 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~~~---- 446 (536)
..+.........+|++++|+|++.+......+.+. +... .+.|+++|+||+|+...... ....
T Consensus 80 ------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l 149 (192)
T cd01889 80 ------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred ------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 22344445567799999999998865544433322 2222 25799999999999753221 1100
Q ss_pred ---h----ccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 447 ---A----QKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 447 ---~----~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
. ....+++++||++|.|+++|+++|.+.+..
T Consensus 150 ~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 150 QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 0 134689999999999999999999887653
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.74 E-value=6.7e-17 Score=153.94 Aligned_cols=155 Identities=21% Similarity=0.195 Sum_probs=100.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe--CCeeEEEeecccccccchhhHHHHHHHh-HHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK--NGGEFLLTDTVGFIQKLPTTLVAAFRAT-LEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~--~g~~i~LiDTpG~i~~lp~~l~e~f~~t-l~ei 389 (536)
.+|+++|++|||||||++++++..+. ...+..+.+.....+... .+..+.+|||||. +.+... ...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~---------~~~~~~~~~~~ 73 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ---------EKLRPLWKSYT 73 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCc---------HhHHHHHHHHh
Confidence 36999999999999999999876543 222211122222222221 3457899999997 222222 2235
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc-------cCCCEEEEecc
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ-------KREDVVCISAL 459 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~-------~~~~~v~vSAk 459 (536)
..+|++++|+|++++....... .+..++......++|+++|+||+|+.... +....... ...+++++||+
T Consensus 74 ~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 153 (183)
T cd04152 74 RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAI 153 (183)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecc
Confidence 6799999999998875433332 22333333344578999999999986432 21211111 11357899999
Q ss_pred CCCCHHHHHHHHHHHhcc
Q 009371 460 SGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~ 477 (536)
+|.|+++++++|.+.+..
T Consensus 154 ~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 154 IGEGLQEGLEKLYEMILK 171 (183)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 106
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=9.6e-17 Score=145.58 Aligned_cols=147 Identities=22% Similarity=0.241 Sum_probs=99.6
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhcc
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESS 393 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aD 393 (536)
|+++|++|||||||+|+|++..+..... .|.......+.. ++..+.+|||||.. .+.. ....+..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~D~~g~~---------~~~~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI--PTVGFNMRKVTK-GNVTLKVWDLGGQP---------RFRSMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCcc--CCCCcceEEEEE-CCEEEEEEECCCCH---------hHHHHHHHHHhcCC
Confidence 7999999999999999999876543222 233333333443 55788999999972 1222 233467899
Q ss_pred ceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--H-HHHh-----ccCCCEEEEeccCCCCH
Q 009371 394 LLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--V-KLEA-----QKREDVVCISALSGNGL 464 (536)
Q Consensus 394 liLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~-~~~~-----~~~~~~v~vSAktg~GI 464 (536)
++++|+|+++...... ...+..++......++|+++|+||+|+...... . .... ....+++++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 9999999987644322 233344444434467899999999998764321 1 1111 12246899999999999
Q ss_pred HHHHHHHHH
Q 009371 465 DEFCSAVQE 473 (536)
Q Consensus 465 deL~~~I~~ 473 (536)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999865
No 107
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.74 E-value=7.1e-17 Score=152.12 Aligned_cols=154 Identities=24% Similarity=0.266 Sum_probs=102.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|.+|||||||++++.+..+.....+....+.....+.+ +| ..+.+|||||. +.|.. ....+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~---------~~~~~~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQ---------ERFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCh---------HHHHhhHHHHhc
Confidence 5899999999999999999987654322222222222333444 33 36789999997 22222 234467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHH-HHhhcCCCCCCEEEEEEcCCCCCChhH-------HHHHhccCCCEEEEeccCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDK-VLSELDVSSIPKLMIWNKVDKVCDPQK-------VKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~-vL~~l~~~~~piIvVlNKiDl~~~~~~-------~~~~~~~~~~~v~vSAktg~ 462 (536)
.+|++++|+|++++.+......+.. +++.......|+++|+||+|+.+.... .........+++++||++|.
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~ 151 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGE 151 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCC
Confidence 8999999999988655544443332 233322234679999999998653221 01112234678999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|++++++.|.+.+.+
T Consensus 152 ~v~~lf~~l~~~~~~ 166 (170)
T cd04108 152 NVREFFFRVAALTFE 166 (170)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887754
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=5.9e-17 Score=151.22 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=102.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
+|+++|.+|||||||++++.+..+.. ..+ .+.+..+....+. .+..+.+|||||.... .......+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~a 71 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE-NVP-RVLPEITIPADVTPERVPTTIVDTSSRPQD--------RANLAAEIRKA 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-cCC-CcccceEeeeeecCCeEEEEEEeCCCchhh--------hHHHhhhcccC
Confidence 58999999999999999999876532 221 2223333333331 3347789999997321 12233446789
Q ss_pred cceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------HHHH---hccCCCEEEEeccCCC
Q 009371 393 SLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------VKLE---AQKREDVVCISALSGN 462 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------~~~~---~~~~~~~v~vSAktg~ 462 (536)
|++++|+|++++.+.+... .+...++... .+.|+++|+||+|+.+.... .... .....+++++||++|.
T Consensus 72 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 72 NVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 9999999999877665543 3444455443 37899999999999764321 1111 1112479999999999
Q ss_pred CHHHHHHHHHHHhc
Q 009371 463 GLDEFCSAVQEKLK 476 (536)
Q Consensus 463 GIdeL~~~I~~~l~ 476 (536)
|++++++.+.+.+.
T Consensus 151 ~v~~lf~~~~~~~~ 164 (166)
T cd01893 151 NVSEVFYYAQKAVL 164 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987654
No 109
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.74 E-value=2.1e-17 Score=168.40 Aligned_cols=163 Identities=31% Similarity=0.438 Sum_probs=125.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchh--hHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT--TLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~--~l~e~f~~tl~ei~~ 391 (536)
-|++||.||||||||+++++..+..+.+++|+|+.|.-+.+....+..+++.|.||+|+.... .+-. ..+.++..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~---~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGL---RFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccH---HHHHHHHh
Confidence 489999999999999999999999999999999999999988867778999999999875432 2222 24667788
Q ss_pred ccceEEEEeCCCcch---HHHHHHHHHHHhhc--CCCCCCEEEEEEcCCCCCChhHHHHHh----c--cCCCEEEEeccC
Q 009371 392 SSLLVHVVDISHPLA---EQQIEAVDKVLSEL--DVSSIPKLMIWNKVDKVCDPQKVKLEA----Q--KREDVVCISALS 460 (536)
Q Consensus 392 aDliLlVvD~s~~~~---~~~~~~v~~vL~~l--~~~~~piIvVlNKiDl~~~~~~~~~~~----~--~~~~~v~vSAkt 460 (536)
+-+++||+|++.... .++.+.+..-|+.+ ...++|.++|+||+|+....+...... . .....++|||.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 999999999986542 45556655555554 356899999999999766544332211 1 112233399999
Q ss_pred CCCHHHHHHHHHHHhcccc
Q 009371 461 GNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 461 g~GIdeL~~~I~~~l~~~~ 479 (536)
++|+++|+..+.+.+....
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999999888764
No 110
>PTZ00369 Ras-like protein; Provisional
Probab=99.73 E-value=7.1e-17 Score=154.42 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=104.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCC-eeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP-TTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~-ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ 387 (536)
.++|+++|.+|||||||++++.+..+.... ..|... ....+.+ ++. .+.+|||||..+ |.. ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~l~~~ 72 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEY--DPTIEDSYRKQCVI-DEETCLLDILDTAGQEE---------YSAMRDQ 72 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCchhhEEEEEEEE-CCEEEEEEEEeCCCCcc---------chhhHHH
Confidence 357999999999999999999976543211 122222 2233334 343 466899999732 111 122
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCC
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSG 461 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg 461 (536)
.+..+|++++|+|++++.+.+....+...+... ...+.|+++|+||+|+..... ..........+++++||++|
T Consensus 73 ~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~ 152 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQR 152 (189)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCC
Confidence 457899999999999987655555444433332 335789999999999864321 11112223468999999999
Q ss_pred CCHHHHHHHHHHHhccc
Q 009371 462 NGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~~ 478 (536)
.|+++++.+|.+.+...
T Consensus 153 ~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 153 VNVDEAFYELVREIRKY 169 (189)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998877654
No 111
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.73 E-value=1.2e-16 Score=152.45 Aligned_cols=153 Identities=22% Similarity=0.198 Sum_probs=100.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
.+|+++|++|||||||++++....+. . . ..|.......+.. ++..+.+|||+|.. .++. ....+..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~-~-~-~~T~~~~~~~~~~-~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 84 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV-T-T-IPTIGFNVETVEY-KNLKFTMWDVGGQD---------KLRPLWRHYYQN 84 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c-c-CCccccceEEEEE-CCEEEEEEECCCCH---------hHHHHHHHHhcC
Confidence 46999999999999999999754332 1 1 1233333333444 66789999999972 2222 2344688
Q ss_pred ccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHhcc------CCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEAQK------REDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~~~------~~~~v~vSAktg~ 462 (536)
+|++|+|+|++++.+.... ..+..++..-...+.|+++|+||+|+..... ........ ...++++||++|.
T Consensus 85 ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 85 TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 9999999999886543322 2233333322234689999999999865321 11111111 1235689999999
Q ss_pred CHHHHHHHHHHHhccc
Q 009371 463 GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~ 478 (536)
|+++++++|.+.+...
T Consensus 165 gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 165 GLYEGLDWLSANIKKS 180 (182)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877654
No 112
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=1e-16 Score=182.84 Aligned_cols=163 Identities=26% Similarity=0.366 Sum_probs=120.0
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhH-HHHHH--HhH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTL-VAAFR--ATL 386 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l-~e~f~--~tl 386 (536)
+.++|+++|.+|||||||+|+|++.+.. +.+.+++|.++....+.+ ++..+.+|||||+.+...... .+.+. .+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3478999999999999999999998753 456677777776665655 778899999999854332221 12232 245
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHH-Hh-----ccCCCEEEEec
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKL-EA-----QKREDVVCISA 458 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~-~~-----~~~~~~v~vSA 458 (536)
..+..+|++++|+|++++.+.++...+..+.. .++|+++|+||+|+.+... .... .. ....+++++||
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 56788999999999999887777665444332 3789999999999976432 1111 11 12457899999
Q ss_pred cCCCCHHHHHHHHHHHhccc
Q 009371 459 LSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~l~~~ 478 (536)
++|.|+++|++.+.+.+...
T Consensus 604 ktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 113
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=1.2e-16 Score=156.11 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=106.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||+++|++..+.....+..+.+.....+.+.++ ..+.+|||+|.. .+.. ....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 73 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE---------RFRSITRSYY 73 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcch---------hHHHHHHHHh
Confidence 46999999999999999999987654332222222333344444334 367899999972 2222 23456
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHH-HHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDK-VLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~-vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+......+.. +.........|+++|+||+|+..... ..........+++++||++|.|
T Consensus 74 ~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~ 153 (211)
T cd04111 74 RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDN 153 (211)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCC
Confidence 78999999999998766555443332 33333334567899999999875321 1112222347899999999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
+++++++|.+.+...
T Consensus 154 v~e~f~~l~~~~~~~ 168 (211)
T cd04111 154 VEEAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877654
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.73 E-value=1.8e-16 Score=144.93 Aligned_cols=151 Identities=18% Similarity=0.158 Sum_probs=101.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|++|||||||++++++..+. .....++.+.....+.. ++ ..+.+|||||... ........+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~ 70 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV-EEYDPTIEDSYRKTIVV-DGETYTLDILDTAGQEE--------FSAMRDLYIRQ 70 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-cCcCCChhHeEEEEEEE-CCEEEEEEEEECCChHH--------HHHHHHHHHhc
Confidence 3899999999999999999977532 22222223333333433 33 4678999999732 11112234678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHh-hcCCCCCCEEEEEEcCCCCCCh----hHH-HHHhccCCCEEEEeccCCCCHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLS-ELDVSSIPKLMIWNKVDKVCDP----QKV-KLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~-~l~~~~~piIvVlNKiDl~~~~----~~~-~~~~~~~~~~v~vSAktg~GId 465 (536)
+|++++|+|.+++.+......+...+. .......|+++|+||+|+.... +.. ........+++++||++|.|++
T Consensus 71 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 150 (160)
T cd00876 71 GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINID 150 (160)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHH
Confidence 999999999998766555444433333 3333578999999999987632 111 1222234689999999999999
Q ss_pred HHHHHHHHH
Q 009371 466 EFCSAVQEK 474 (536)
Q Consensus 466 eL~~~I~~~ 474 (536)
+++++|.+.
T Consensus 151 ~l~~~l~~~ 159 (160)
T cd00876 151 EVFKLLVRE 159 (160)
T ss_pred HHHHHHHhh
Confidence 999999765
No 115
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=8.8e-17 Score=183.35 Aligned_cols=160 Identities=27% Similarity=0.310 Sum_probs=112.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH-HHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF-RATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f-~~tl~ei 389 (536)
.++|+|+|++|||||||+|+|++.... +.+.++.|.+.......+ ++..+.+|||||+...... +...+ ..+...+
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~~~-~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADVEG-IDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCCcc-HHHHHHHHHHHHH
Confidence 468999999999999999999987543 344455554444444444 6788999999998532222 22223 3455667
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHH-HhccCCCEEEEeccCCCCHHHHH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKL-EAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~-~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
..+|++++|+|++.+....+... ...+. ..++|+|+|+||+|+......... ........+++||++|.|+++|+
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d~~i-~~~Lr---~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl 428 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTDERI-VRMLR---RAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLL 428 (712)
T ss_pred HhCCEEEEEEECCCCCCHHHHHH-HHHHH---hcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHH
Confidence 89999999999988765544332 33333 357899999999998654322221 12233457899999999999999
Q ss_pred HHHHHHhcc
Q 009371 469 SAVQEKLKD 477 (536)
Q Consensus 469 ~~I~~~l~~ 477 (536)
++|.+.+..
T Consensus 429 ~~i~~~l~~ 437 (712)
T PRK09518 429 DEALDSLKV 437 (712)
T ss_pred HHHHHhccc
Confidence 999988754
No 116
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.73 E-value=5.7e-17 Score=150.67 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=103.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|++|||||||++++++..+. ..+..++.......+.+ ++. .+.+|||||...... ......+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~ 71 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT-------EQLERSIRW 71 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cccCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc-------chHHHHHHh
Confidence 3899999999999999999865442 22222221222233434 444 467999999843111 112334678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCC-CC
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSG-NG 463 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg-~G 463 (536)
+|++++|+|++++.+.+....+...+.... ..+.|+++|+||+|+.... +..........+++++||++| .|
T Consensus 72 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~ 151 (165)
T cd04146 72 ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDG 151 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchh
Confidence 999999999999877666665555555543 3478999999999985431 111222223468999999999 49
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
+++++..+.+.+.
T Consensus 152 v~~~f~~l~~~~~ 164 (165)
T cd04146 152 VHSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 117
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.73 E-value=1.8e-16 Score=148.53 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=104.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH--hHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA--TLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~--tl~e 388 (536)
.+|+++|++|+|||||++++++..+.....+..+.+.....+.+ ++ ..+.+|||+|.. .+.. .-..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQE---------RFRKSMVQHY 72 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChH---------HHHHhhHHHh
Confidence 46999999999999999999876543222222222223334444 34 467899999972 2221 1223
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccC--
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALS-- 460 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAkt-- 460 (536)
+..+|++++|+|++++.+......+...+... ...++|+++|+||+|+..... ..........+++++||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPS 152 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCc
Confidence 57899999999999887666655554433332 235789999999999864321 1112223357899999999
Q ss_pred -CCCHHHHHHHHHHHhc
Q 009371 461 -GNGLDEFCSAVQEKLK 476 (536)
Q Consensus 461 -g~GIdeL~~~I~~~l~ 476 (536)
+.|+++++..+.+.+.
T Consensus 153 ~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 153 ENDHVEAIFMTLAHKLK 169 (170)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 8999999999887653
No 118
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.73 E-value=1.1e-16 Score=152.90 Aligned_cols=151 Identities=16% Similarity=0.241 Sum_probs=101.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccC--CeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLD--PTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld--~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
+|+++|..|+|||||++++.+..+... ...|.. .....+.+ ++ ..+.+|||+|.. .|.. ....
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~--~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~---------~~~~~~~~~ 69 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDED--YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQR---------EFINMLPLV 69 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCch---------hHHHhhHHH
Confidence 589999999999999999987755322 222332 22234444 44 357899999972 2222 1234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC---hh--HH-----HHHhccCCCEEEEec
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD---PQ--KV-----KLEAQKREDVVCISA 458 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~---~~--~~-----~~~~~~~~~~v~vSA 458 (536)
+..+|++++|+|++++.+......+...+........| |+|+||+|+... .. .. ........+++++||
T Consensus 70 ~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SA 148 (182)
T cd04128 70 CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCST 148 (182)
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeC
Confidence 67899999999999987766655444444443334456 689999998531 11 01 111223468999999
Q ss_pred cCCCCHHHHHHHHHHHhcc
Q 009371 459 LSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~l~~ 477 (536)
++|.|++++++++.+.+..
T Consensus 149 k~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 149 SHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887754
No 119
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.73 E-value=1.2e-16 Score=143.66 Aligned_cols=153 Identities=29% Similarity=0.335 Sum_probs=106.3
Q ss_pred EEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccce
Q 009371 317 LVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLL 395 (536)
Q Consensus 317 IVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDli 395 (536)
++|++|+|||||+|+|++.... .......+............+..+.++||||+......... ........+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~-~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE-REELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh-HHHHHHHHHHhCCEE
Confidence 5899999999999999987655 33344444454444444433678999999998553322211 112334456789999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHH--------HhccCCCEEEEeccCCCCHHHH
Q 009371 396 VHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKL--------EAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 396 LlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~--------~~~~~~~~v~vSAktg~GIdeL 467 (536)
++|+|++......... ++......+.|+++|+||+|+......... ......+++++||+++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~----~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK----LLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH----HHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999887655443 222233357899999999999875432221 1224578999999999999999
Q ss_pred HHHHHHH
Q 009371 468 CSAVQEK 474 (536)
Q Consensus 468 ~~~I~~~ 474 (536)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999765
No 120
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.73 E-value=1.1e-16 Score=157.91 Aligned_cols=151 Identities=19% Similarity=0.130 Sum_probs=100.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~a 392 (536)
+|+++|.+|||||||++++.+..+.. ...|.........+ ....+.+|||+|... |.. ....+..+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~---~~~Tig~~~~~~~~-~~~~l~iwDt~G~e~---------~~~l~~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD---TVSTVGGAFYLKQW-GPYNISIWDTAGREQ---------FHGLGSMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CCCccceEEEEEEe-eEEEEEEEeCCCccc---------chhhHHHHhccC
Confidence 58999999999999999999876531 12233222222222 345688999999832 111 12236789
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC-------------------h-----hHHHHHhc
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD-------------------P-----QKVKLEAQ 448 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~-------------------~-----~~~~~~~~ 448 (536)
|++|+|+|++++.+......+...+......+.|+|+|+||+|+... . +.......
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 99999999999876665543332233333456899999999998651 1 11111111
Q ss_pred c--------------CCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 449 K--------------REDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 449 ~--------------~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
. ..+++++||++|.|+++++..+.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 1 1479999999999999999999887654
No 121
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.73 E-value=2e-16 Score=147.52 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=99.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|+|||||++++.+..+........+.+.....+.+ ++. .+.+|||||. +.+.. ....+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~---------~~~~~~~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQ---------ERFRSLRTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCCh---------HHHHHhHHHHh
Confidence 57999999999999999999876554322221112222233444 343 5678999996 22222 22346
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHH-HhhcC---CCCCCEEEEEEcCCCCCCh---hHHHHH-hcc-CCCEEEEeccC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKV-LSELD---VSSIPKLMIWNKVDKVCDP---QKVKLE-AQK-REDVVCISALS 460 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~v-L~~l~---~~~~piIvVlNKiDl~~~~---~~~~~~-~~~-~~~~v~vSAkt 460 (536)
..+|++++|+|++++.+.+....+... +.... ..+.|+++|+||+|+.... ...... ... ..+++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 789999999999987665555444332 22221 2468999999999986421 111111 122 35799999999
Q ss_pred CCCHHHHHHHHHHH
Q 009371 461 GNGLDEFCSAVQEK 474 (536)
Q Consensus 461 g~GIdeL~~~I~~~ 474 (536)
|.|++++++.+.+.
T Consensus 156 ~~~v~~~~~~~~~~ 169 (170)
T cd04116 156 ATNVAAAFEEAVRR 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 122
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.72 E-value=1.8e-16 Score=149.39 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=104.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|++|||||||++++++..+.... ..++....+..+.+ ++. .+.+|||||..+ |.. ....+.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~---------~~~~~~~~~~ 71 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESY-YPTIENTFSKIIRY-KGQDYHLEIVDTAGQDE---------YSILPQKYSI 71 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccc-CcchhhhEEEEEEE-CCEEEEEEEEECCChHh---------hHHHHHHHHh
Confidence 5999999999999999999976543222 21222223444444 333 467999999722 211 113456
Q ss_pred hccceEEEEeCCCcchHHHHHH-HHHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEA-VDKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~-v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+|++++|+|.++....+.... +..++......+.|+|+|+||+|+..... . .........+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 151 (180)
T cd04137 72 GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENV 151 (180)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 7999999999998765544443 34455555556789999999999864221 1 1112223468999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++++.+|.+.+...
T Consensus 152 ~~l~~~l~~~~~~~ 165 (180)
T cd04137 152 EEAFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 123
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.4e-17 Score=178.24 Aligned_cols=161 Identities=25% Similarity=0.275 Sum_probs=126.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.+|+++|.||+|||||+|+|+|.+..+++.++.|++-..+.+.. .|..+.++|.||.++-.+....+...+-.-.-...
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 35999999999999999999999999999999999999998887 67789999999998866665555544322223567
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHHhccCCCEEEEeccCCCCHHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLEAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
|+++.|+|+++-. .......++++ .++|+++++|++|..... +..+.....+.|++++||++|.|+++++
T Consensus 83 D~ivnVvDAtnLe--RnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 83 DLIVNVVDATNLE--RNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELK 156 (653)
T ss_pred CEEEEEcccchHH--HHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 9999999998753 33333333333 278999999999987642 2334455568999999999999999999
Q ss_pred HHHHHHhcccce
Q 009371 469 SAVQEKLKDSMV 480 (536)
Q Consensus 469 ~~I~~~l~~~~~ 480 (536)
+.+.+.......
T Consensus 157 ~~i~~~~~~~~~ 168 (653)
T COG0370 157 RAIIELAESKTT 168 (653)
T ss_pred HHHHHhcccccc
Confidence 999987776554
No 124
>PLN03108 Rab family protein; Provisional
Probab=99.72 E-value=2.8e-16 Score=153.34 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=105.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHH-HhHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFR-ATLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~-~tl~ei 389 (536)
.+|+|+|++|||||||+++|++..+.....+....+.....+.+ ++. .+.+|||+|.. .+. .....+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~---------~~~~~~~~~~ 76 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQE---------SFRSITRSYY 76 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcH---------HHHHHHHHHh
Confidence 57999999999999999999987654332222222223344444 443 56799999972 122 233456
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +..........+++++||++|.|+
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 789999999999987665554433332333333578999999999986532 111222234568999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
+++|.++.+.+..
T Consensus 157 ~e~f~~l~~~~~~ 169 (210)
T PLN03108 157 EEAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876643
No 125
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.72 E-value=9.2e-17 Score=145.60 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=91.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
+|+++|.+|||||||+|+|++..+. . ..+..+.+ .+ .+|||||... .....+......+..+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--------~-~~t~~~~~-~~---~~iDt~G~~~----~~~~~~~~~~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--------Y-KKTQAVEY-ND---GAIDTPGEYV----ENRRLYSALIVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--------c-ccceeEEE-cC---eeecCchhhh----hhHHHHHHHHHHhhcCC
Confidence 5899999999999999999987431 1 11223333 22 5899999721 11233555555688999
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HHHH-HhccC-CCEEEEeccCCCCHHHHH
Q 009371 394 LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KVKL-EAQKR-EDVVCISALSGNGLDEFC 468 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~~~-~~~~~-~~~v~vSAktg~GIdeL~ 468 (536)
++++|+|++++.+.... .++..+ ..|+++|+||+|+.+... .... ..... .+++++||++|.|+++++
T Consensus 65 ~vilv~d~~~~~s~~~~----~~~~~~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 65 VIALVQSATDPESRFPP----GFASIF---VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEEEEecCCCCCcCCCh----hHHHhc---cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999887654332 122222 349999999999865321 1111 11222 479999999999999999
Q ss_pred HHHH
Q 009371 469 SAVQ 472 (536)
Q Consensus 469 ~~I~ 472 (536)
++|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 126
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.72 E-value=1.4e-16 Score=151.12 Aligned_cols=154 Identities=17% Similarity=0.201 Sum_probs=100.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|.+|+|||||++++.+..+... ...+........+...++. .+.+|||||.. .+.. ....+.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 71 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEE-YVPTVFENYVTNIQGPNGKIIELALWDTAGQE---------EYDRLRPLSYP 71 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCC-CCCeeeeeeEEEEEecCCcEEEEEEEECCCch---------hHHHHHHHhCC
Confidence 589999999999999999998765322 1111111122233333233 57899999972 1222 112457
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--------hHHH-HHhccCC-CEEEEecc
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--------QKVK-LEAQKRE-DVVCISAL 459 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--------~~~~-~~~~~~~-~~v~vSAk 459 (536)
.+|++++|+|++++.+.+... .+...+... ..+.|+++|+||+|+.... .... ....... +++++||+
T Consensus 72 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 72 DVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 899999999999876655443 222222222 2478999999999986532 1111 1122334 78999999
Q ss_pred CCCCHHHHHHHHHHHhccc
Q 009371 460 SGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~~ 478 (536)
+|.|+++++..+.+.+...
T Consensus 151 ~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 151 TMENVEEVFDTAIEEALKK 169 (187)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999998877654
No 127
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.7e-16 Score=152.27 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=123.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
..+|+++|.+|||||+++-++....+.........+|...+.+.+ +|. .+.+|||+|+ +.|+. +-.+
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQ---------erf~ti~~sY 81 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQ---------ERFRTITTAY 81 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccc---------hhHHHHHHHH
Confidence 468999999999999999999977665443334456777788887 444 5679999998 44544 5677
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
++.|+++++|+|+++..+.+....|.+.+++....++|.++|+||+|+..... ........+..++++|||+|.|
T Consensus 82 yrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 82 YRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred HhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 89999999999999988877777777778877777899999999999977422 2233334578899999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009371 464 LDEFCSAVQEKLKD 477 (536)
Q Consensus 464 IdeL~~~I~~~l~~ 477 (536)
|++.|-.|.+.+..
T Consensus 162 I~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 162 IEEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887765
No 128
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.72 E-value=1.3e-16 Score=149.73 Aligned_cols=147 Identities=26% Similarity=0.269 Sum_probs=99.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~a 392 (536)
+|+++|++|||||||+++|++. +. .....|.......+.. ++..+.+|||||.. .++. ...++..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~--~~~~~t~g~~~~~~~~-~~~~~~i~D~~G~~---------~~~~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IP--KKVAPTVGFTPTKLRL-DKYEVCIFDLGGGA---------NFRGIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CC--ccccCcccceEEEEEE-CCEEEEEEECCCcH---------HHHHHHHHHHcCC
Confidence 3899999999999999999976 21 2233444444455555 67789999999972 1222 23456889
Q ss_pred cceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HHH-----Hh---ccCCCEEEEeccC
Q 009371 393 SLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VKL-----EA---QKREDVVCISALS 460 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~~-----~~---~~~~~~v~vSAkt 460 (536)
|++++|+|+++........ .+..++......++|+++|+||+|+...... ... .. ....+++++||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 9999999999875433322 2333333323357899999999998764311 111 11 0123577899999
Q ss_pred C------CCHHHHHHHHHH
Q 009371 461 G------NGLDEFCSAVQE 473 (536)
Q Consensus 461 g------~GIdeL~~~I~~ 473 (536)
| .|+++.++||.+
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999864
No 129
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.72 E-value=1.6e-16 Score=156.21 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=105.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeE--EEEEeC-CeeEEEeecccccccchhhHHHHHHHh-HH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTR--RVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRAT-LE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr--~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~t-l~ 387 (536)
..+|+++|.+|||||||+++++...+.... ..|...... .+...+ ...+.+|||+|... |... ..
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~--~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~ 81 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDG 81 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCcc--CCccceeEEEEEEEECCeEEEEEEEECCCchh---------hhhhhHH
Confidence 458999999999999999998766543221 223322222 232222 24788999999722 2222 22
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh---hHHHHHhccCCCEEEEeccCCCCH
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP---QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~---~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+..+|++|+|+|.+++.+......|...+... ..+.|+++|+||+|+.... ...........+++++||++|.|+
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 357899999999999987666555444434333 3578999999999986431 122222334568999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++++.+|.+.+...
T Consensus 161 ~~~f~~l~~~~~~~ 174 (219)
T PLN03071 161 EKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999877543
No 130
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.72 E-value=3e-16 Score=149.85 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=100.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCC--eeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhH-HH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP--TTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATL-EE 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~--ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl-~e 388 (536)
+|+++|.+|+|||||++++++..+..... ..|... ....+.+ ++. .+.+|||+|..+ +..+. ..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~---------~~~~~~~~ 70 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPY-QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSER---------YEAMSRIY 70 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCc-ccceeeEEEEEEEEE-CCEEEEEEEEECCCchh---------hhhhhHhh
Confidence 59999999999999999999876542111 122221 1223444 444 456999999722 22211 23
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--------HH-HHHhccCCCEEEEecc
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--------KV-KLEAQKREDVVCISAL 459 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--------~~-~~~~~~~~~~v~vSAk 459 (536)
+..+|++++|+|++++.+.+....+...+.... .+.|+++|+||+|+..... .. ........+++++||+
T Consensus 71 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 149 (193)
T cd04118 71 YRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSK 149 (193)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 468999999999988765544443333333322 3689999999999864321 11 1112234678999999
Q ss_pred CCCCHHHHHHHHHHHhcc
Q 009371 460 SGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~ 477 (536)
+|.|+++++++|.+.+..
T Consensus 150 ~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 150 TGQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 131
>PRK09866 hypothetical protein; Provisional
Probab=99.72 E-value=2.3e-16 Score=172.66 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=126.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccc-cccccccCCee
Q 009371 273 KQIEVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAE-DRLFATLDPTT 351 (536)
Q Consensus 273 ~~le~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~-~~~~~Tld~tt 351 (536)
..+..|||.|+++|..|+++++++.+.+ +.++++|++|+|||||+|+|+|..+... +.+++++ ++.
T Consensus 42 ~~~~~drR~i~~ri~~L~~~L~Kv~~~~------------~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT~ 108 (741)
T PRK09866 42 LALPWSQPNIAERHAMLNNELRKISRLE------------MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PTL 108 (741)
T ss_pred CcCCCcHHHHHHHHHHHHHHHHHHhccc------------eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cEE
Confidence 3456799999999999999999986544 6899999999999999999999877655 5555555 222
Q ss_pred EEEE--------E-------------------------------------------e-----------------------
Q 009371 352 RRVQ--------M-------------------------------------------K----------------------- 357 (536)
Q Consensus 352 r~i~--------l-------------------------------------------~----------------------- 357 (536)
.... + .
T Consensus 109 i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~ln 188 (741)
T PRK09866 109 IRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLN 188 (741)
T ss_pred EEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHH
Confidence 1100 0 0
Q ss_pred ----------------------------------C-----CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEE
Q 009371 358 ----------------------------------N-----GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHV 398 (536)
Q Consensus 358 ----------------------------------~-----g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlV 398 (536)
. ..+++|+||||+.......+... +.+.+..+|+|++|
T Consensus 189 divr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~---M~eqL~eADvVLFV 265 (741)
T PRK09866 189 DLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKM---LNQQLARASAVLAV 265 (741)
T ss_pred HHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHH---HHHHHhhCCEEEEE
Confidence 0 03467999999964322222222 23467899999999
Q ss_pred EeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHH---h--c---cCCCEEEEeccCCCCHHH
Q 009371 399 VDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLE---A--Q---KREDVVCISALSGNGLDE 466 (536)
Q Consensus 399 vD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~---~--~---~~~~~v~vSAktg~GIde 466 (536)
+|+.......+... .+.++..+. +.|+++|+||+|+.+.. +..... . . ....+++|||++|.|++.
T Consensus 266 VDat~~~s~~DeeI-lk~Lkk~~K-~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~ 343 (741)
T PRK09866 266 LDYTQLKSISDEEV-REAILAVGQ-SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANR 343 (741)
T ss_pred EeCCCCCChhHHHH-HHHHHhcCC-CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Confidence 99988665555443 334444321 25999999999987521 111111 1 1 235699999999999999
Q ss_pred HHHHHHH
Q 009371 467 FCSAVQE 473 (536)
Q Consensus 467 L~~~I~~ 473 (536)
|++.|..
T Consensus 344 LLdeI~~ 350 (741)
T PRK09866 344 ARHELAN 350 (741)
T ss_pred HHHHHHh
Confidence 9999876
No 132
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=1.7e-16 Score=149.35 Aligned_cols=153 Identities=17% Similarity=0.145 Sum_probs=99.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccc-cCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFAT-LDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~T-ld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
..+|+++|.+|||||||++++++..+...++..+. .......+.+ +| ..+.+|||+|.... ......+
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~--------~~~~~~~ 74 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVA--------ILLNDAE 74 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccc--------cccchhh
Confidence 45799999999999999999998765412222111 1222234444 44 35678999997321 1112234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcC-CCCCCEEEEEEcCCCCCChh-----HHHHHhccC-CCEEEEeccCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELD-VSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKR-EDVVCISALSG 461 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~-~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~-~~~v~vSAktg 461 (536)
+..+|++++|+|++++.+.+.. ..++..+. ..++|+++|+||+|+.+... ......... ..++++||++|
T Consensus 75 ~~~~d~~llv~d~~~~~s~~~~---~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 75 LAACDVACLVYDSSDPKSFSYC---AEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hhcCCEEEEEEeCCCHHHHHHH---HHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 5789999999999887543333 33444332 23689999999999864321 111111222 24699999999
Q ss_pred CCHHHHHHHHHHHhc
Q 009371 462 NGLDEFCSAVQEKLK 476 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~ 476 (536)
.|++++++.|.+.+.
T Consensus 152 ~~v~~lf~~l~~~~~ 166 (169)
T cd01892 152 DSSNELFTKLATAAQ 166 (169)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999988654
No 133
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=1.8e-16 Score=148.18 Aligned_cols=142 Identities=20% Similarity=0.249 Sum_probs=96.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
+|+++|++|+|||||+|+|.|... ....+..+.+ ++. .+|||||+....+ ..+......+..+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---------~~~~~~~v~~-~~~--~~iDtpG~~~~~~----~~~~~~~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---------LARKTQAVEF-NDK--GDIDTPGEYFSHP----RWYHALITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---------cCccceEEEE-CCC--CcccCCccccCCH----HHHHHHHHHHhcCC
Confidence 599999999999999999997532 1123444444 222 2699999854332 22334445578999
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HHHH-HhccC--CCEEEEeccCCCCHHHHHH
Q 009371 394 LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKL-EAQKR--EDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~-~~~~~--~~~v~vSAktg~GIdeL~~ 469 (536)
++++|+|++...+... .++..+. .+.|+++++||+|+..... .... ..... .|++++||++|+|+++|++
T Consensus 67 ~il~v~d~~~~~s~~~-----~~~~~~~-~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 67 MLIYVHGANDPESRLP-----AGLLDIG-VSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEEEEeCCCcccccC-----HHHHhcc-CCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999999987654321 1222222 3679999999999865322 1111 11222 4899999999999999999
Q ss_pred HHHHHhcc
Q 009371 470 AVQEKLKD 477 (536)
Q Consensus 470 ~I~~~l~~ 477 (536)
+|.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99888754
No 134
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=3.4e-16 Score=150.98 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=102.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|.+|||||||++++++..+.. ....++.+.....+.+ ++ ..+.+|||||... |.. ....+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~---------~~~~~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP-KYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYS---------FPAMRKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cCCCchhhheeEEEEE-CCEEEEEEEEECCCchh---------hhHHHHHHhh
Confidence 38999999999999999999875532 1111222222333444 44 4678999999732 221 113467
Q ss_pred hccceEEEEeCCCcchHHHHHHHH-HHHhhcCCCCCCEEEEEEcCCCCCChh-----H-HHHH-hccCCCEEEEeccCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVD-KVLSELDVSSIPKLMIWNKVDKVCDPQ-----K-VKLE-AQKREDVVCISALSGN 462 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~-~vL~~l~~~~~piIvVlNKiDl~~~~~-----~-~~~~-~~~~~~~v~vSAktg~ 462 (536)
.+|++++|+|++++.+.+....+. .++......++|+|+|+||+|+..... . .... .....+++++||++|.
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 149 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNE 149 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCC
Confidence 899999999999876655554443 333333335789999999999865311 1 1111 1224578999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 150 gv~~l~~~l~~~~~~ 164 (198)
T cd04147 150 NVLEVFKELLRQANL 164 (198)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987763
No 135
>PLN03118 Rab family protein; Provisional
Probab=99.71 E-value=4.4e-16 Score=151.64 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=103.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+|+|++|||||||+++|++..+.. ..+..+.+.....+.+ ++ ..+.+|||||... |.. ....+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------~~~~~~~~~ 83 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQER---------FRTLTSSYY 83 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEE-CCEEEEEEEEECCCchh---------hHHHHHHHH
Confidence 479999999999999999999865421 1111111222233334 33 3678999999722 222 22346
Q ss_pred HhccceEEEEeCCCcchHHHHHH-HHHHHhhcC-CCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEA-VDKVLSELD-VSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~-v~~vL~~l~-~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~ 462 (536)
..+|++++|+|++++.+...... +...+.... ..+.|+++|+||+|+..... ..........+++++||++|.
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~ 163 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRE 163 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 78999999999998766555432 333333322 23579999999999864321 112222344678999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 009371 463 GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~ 478 (536)
|+++++++|.+.+...
T Consensus 164 ~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 164 NVEQCFEELALKIMEV 179 (211)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887553
No 136
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.71 E-value=1.1e-16 Score=148.55 Aligned_cols=150 Identities=18% Similarity=0.210 Sum_probs=95.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
+|+++|++|||||||+++|++..+.....+ +..+.....+... ....+.+|||||+.... .+. ...+..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~------~~~--~~~~~~~ 72 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEYD------RLR--PLSYPNT 72 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCccccc------ccc--hhhcCCC
Confidence 589999999999999999998765322111 1111122222221 12368899999984310 111 1123679
Q ss_pred cceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH----------------HHHhccCC-CEE
Q 009371 393 SLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV----------------KLEAQKRE-DVV 454 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~----------------~~~~~~~~-~~v 454 (536)
|++++|+|++++.+..... .+...+... ..+.|+++|+||+|+....... ........ +++
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 151 (171)
T cd00157 73 DVFLICFSVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence 9999999998865443322 222222222 2379999999999987654221 11112223 899
Q ss_pred EEeccCCCCHHHHHHHHHH
Q 009371 455 CISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~ 473 (536)
++||++|.|+++++++|.+
T Consensus 152 ~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 152 ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EeecCCCCCHHHHHHHHhh
Confidence 9999999999999999865
No 137
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4e-16 Score=147.71 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=122.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC-eeEEEeecccccccchhhHHHHHHHhH-HHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG-GEFLLTDTVGFIQKLPTTLVAAFRATL-EEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g-~~i~LiDTpG~i~~lp~~l~e~f~~tl-~ei~ 390 (536)
.+++++|..++||||||++++...+....++...+|....++.+.+. .++.+|||+|+ +.|+... .+++
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ---------ERFrslipsY~R 93 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ---------ERFRSLIPSYIR 93 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccH---------HHHhhhhhhhcc
Confidence 68999999999999999999987776666666677777777776332 36789999998 6777743 5779
Q ss_pred hccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----HHHhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----KLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----~~~~~~~~~~v~vSAktg~GI 464 (536)
++.+++.|+|.++..+.++...| +.++.+-+..+.-+++|+||.||.+..+.. ......+..++.+||+.|.|+
T Consensus 94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 94 DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 99999999999998776655443 445555555556778999999999864322 223334568999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 009371 465 DEFCSAVQEKLKDSM 479 (536)
Q Consensus 465 deL~~~I~~~l~~~~ 479 (536)
.+||..|...+....
T Consensus 174 k~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 174 KQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHhccCcc
Confidence 999999999887654
No 138
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-16 Score=150.57 Aligned_cols=158 Identities=20% Similarity=0.150 Sum_probs=110.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
.+|+++|..|+|||||+-++....+.....+...-...+..+.+.+ ..++.+|||+|+- .|++ .-.+++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE---------Ry~slapMYyR 76 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE---------RYHSLAPMYYR 76 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcc---------cccccccceec
Confidence 4799999999999999999987766532222222223445555522 2477899999983 2333 234578
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.|+.+|+|+|+++..+....+.|-.-|.+-...++-+.+|+||+||..... ...........++++|||+|.|++
T Consensus 77 gA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 77 GANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred CCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHH
Confidence 999999999999976655554443334433334555678999999987322 222333456789999999999999
Q ss_pred HHHHHHHHHhcccc
Q 009371 466 EFCSAVQEKLKDSM 479 (536)
Q Consensus 466 eL~~~I~~~l~~~~ 479 (536)
+++..|.+.+....
T Consensus 157 ~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 157 EIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHHhccCcc
Confidence 99999999988654
No 139
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.70 E-value=6.5e-16 Score=152.15 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=101.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccccc--CCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL--DPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl--d~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
+|+++|.+|+|||||++++++..+..... ..+. +.....+.+. ....+.+|||||.. ..... ..+.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--------~~~~~--~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAY-DASGDDDTYERTVSVDGEESTLVVIDHWEQE--------MWTED--SCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCc-CCCccccceEEEEEECCEEEEEEEEeCCCcc--------hHHHh--HHhh
Confidence 69999999999999999997654431111 1222 2333444442 22467899999983 01111 1234
Q ss_pred -hccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 391 -ESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 391 -~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
.+|++++|+|++++.+......+...+... ...++|+|+|+||+|+..... ..........+++++||++|.|
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~g 150 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN 150 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 799999999999986655444443333332 235789999999999865421 1111222356899999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009371 464 LDEFCSAVQEKLKD 477 (536)
Q Consensus 464 IdeL~~~I~~~l~~ 477 (536)
+++++++|.+.+..
T Consensus 151 v~~l~~~l~~~~~~ 164 (221)
T cd04148 151 VDELLEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988864
No 140
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.70 E-value=4.9e-16 Score=145.17 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=99.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHh-HHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRAT-LEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~t-l~ei~ 390 (536)
+|+++|.+|||||||++++.+..+... ...++.+.....+.+ ++ ..+.+|||||..+ |... -..+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~ 71 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIES-YDPTIEDSYRKQVEI-DGRQCDLEILDTAGTEQ---------FTAMRELYIK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchheEEEEEEE-CCEEEEEEEEeCCCccc---------chhhhHHHHh
Confidence 699999999999999999987654221 111111111233333 33 3677999999732 2221 12356
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhh-cCCCCCCEEEEEEcCCCCCChh----H-HHHHhccC-CCEEEEeccCCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSE-LDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKR-EDVVCISALSGNG 463 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~-l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~-~~~v~vSAktg~G 463 (536)
.+|++++|+|.+++.+.+....+...+.. ....+.|+++|+||+|+..... . ........ .+++++||++|.|
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~ 151 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC
Confidence 78999999999987665554444443333 3445789999999999865321 1 11111222 6799999999999
Q ss_pred HHHHHHHHHHHh
Q 009371 464 LDEFCSAVQEKL 475 (536)
Q Consensus 464 IdeL~~~I~~~l 475 (536)
+++++++|...+
T Consensus 152 i~~~f~~i~~~~ 163 (168)
T cd04177 152 VDEVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 141
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.70 E-value=3.2e-16 Score=148.29 Aligned_cols=148 Identities=17% Similarity=0.189 Sum_probs=98.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCC-eeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP-TTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~-ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
+|+++|.+|||||||+.++.+..+.... ..|... ....+.+ ++ ..+.+|||+|.. .+.. ....+
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMV-DGKPVNLGLWDTAGQE---------DYDRLRPLSY 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcC--CCcceeeeEEEEEE-CCEEEEEEEEECCCch---------hhhhhhhhhc
Confidence 6999999999999999999876543221 122222 2223333 44 357799999972 1221 12245
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----------------HHHHhccC-
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----------------VKLEAQKR- 450 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----------------~~~~~~~~- 450 (536)
..+|++|+|+|++++.+..... .+...+... ..+.|+++|+||+|+...... ........
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 149 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 149 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 7899999999999987665553 343434432 347899999999998643210 00111122
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHH
Q 009371 451 EDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 451 ~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
.+++++||++|.|++++++.+.+.
T Consensus 150 ~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 150 VKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cEEEEecccccCCHHHHHHHHHHh
Confidence 478999999999999999998753
No 142
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.70 E-value=2.3e-16 Score=147.51 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=97.1
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
|+++|.+|+|||||++++.+..+.....+ +..+.....+.+ ++. .+.+|||||... +.. ....+..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP-TVFENYSADVEV-DGKPVELGLWDTAGQED---------YDRLRPLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCC-cEEeeeeEEEEE-CCEEEEEEEEECCCCcc---------cchhchhhcCC
Confidence 58999999999999999998765322111 111112223333 444 577999999722 111 1123568
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----------------HHHHhccC-CC
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----------------VKLEAQKR-ED 452 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----------------~~~~~~~~-~~ 452 (536)
+|++++|+|.+++.+.+... .+...+... ..+.|+++|+||+|+...... .......+ .+
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVK 148 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcE
Confidence 99999999999876554432 233333332 247899999999998753210 01111223 37
Q ss_pred EEEEeccCCCCHHHHHHHHHHHh
Q 009371 453 VVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l 475 (536)
++++||++|.|++++++.+.+.+
T Consensus 149 ~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 149 YLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999988765
No 143
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=3.9e-16 Score=178.39 Aligned_cols=157 Identities=23% Similarity=0.266 Sum_probs=113.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccch----hhHHHHHHHhHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP----TTLVAAFRATLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp----~~l~e~f~~tl~e 388 (536)
.+|+++|++|||||||+|+|+|.+..+.+.++.|.+...+.+.. ++.++.++||||+.+-.. ....+.+......
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 46999999999999999999999888888888888877777665 677899999999865322 1122222222212
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HHHHHhccCCCEEEEeccCCCCH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
...+|++++|+|+++... ....+.+ +.+ .++|+++|+||+|+.+... ........+.|++++||++|+|+
T Consensus 83 ~~~aD~vI~VvDat~ler--~l~l~~q-l~e---~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GI 156 (772)
T PRK09554 83 SGDADLLINVVDASNLER--NLYLTLQ-LLE---LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGI 156 (772)
T ss_pred ccCCCEEEEEecCCcchh--hHHHHHH-HHH---cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCH
Confidence 347899999999987532 2222222 233 3689999999999874321 11222334679999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
+++++.+.+...
T Consensus 157 deL~~~I~~~~~ 168 (772)
T PRK09554 157 EALKLAIDRHQA 168 (772)
T ss_pred HHHHHHHHHhhh
Confidence 999999988764
No 144
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.69 E-value=5.7e-16 Score=146.73 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=99.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccccccc-CCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL-DPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl-d~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.+|+++|.+|+|||||++++....+.. +.. .|. +.....+.+ ++ ..+.+|||+|..+ +.. ....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~-~~~-pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~ 69 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYV-PTVFDNYAVTVMI-GGEPYTLGLFDTAGQED---------YDRLRPLS 69 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCC-CceeeeeEEEEEE-CCEEEEEEEEECCCccc---------hhhhhhhh
Confidence 369999999999999999999765532 211 122 112223433 45 3567999999822 222 1224
Q ss_pred HHhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH----------------H-HHhcc-
Q 009371 389 ISESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV----------------K-LEAQK- 449 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~----------------~-~~~~~- 449 (536)
+..+|++++|+|++++.+.+... .|...+... ..+.|+|+|+||+|+....+.. . .....
T Consensus 70 ~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 70 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 67899999999999987665553 243334332 2478999999999986542110 0 11112
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHH
Q 009371 450 REDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 450 ~~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
...++++||++|.|++++++.+...
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 2579999999999999999988763
No 145
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.69 E-value=2.6e-16 Score=149.85 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=103.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCC-eeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP-TTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~-ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.+|+++|.+|+|||||+.++....+... + ..|+.. ....+.. ++. .+.+|||+|.. .|.. ....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~-~-~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~---------~~~~~~~~~ 69 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTD-Y-IPTVFDNFSANVSV-DGNTVNLGLWDTAGQE---------DYNRLRPLS 69 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-C-CCcceeeeEEEEEE-CCEEEEEEEEECCCCc---------cccccchhh
Confidence 3699999999999999999997765322 1 223322 2223333 443 56799999972 2222 2235
Q ss_pred HHhccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---------------HHHHHhccCC-
Q 009371 389 ISESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---------------KVKLEAQKRE- 451 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---------------~~~~~~~~~~- 451 (536)
++.+|++++|+|.+++.+.+.. ..|...+.... .+.|+++|+||+|+.+... ..........
T Consensus 70 ~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 148 (176)
T cd04133 70 YRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA 148 (176)
T ss_pred cCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC
Confidence 6889999999999998776664 34444444333 4789999999999965321 1111122233
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
+++++||++|.|+++++..+.+.+.
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHHh
Confidence 6899999999999999999988653
No 146
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.69 E-value=8.6e-16 Score=154.07 Aligned_cols=151 Identities=19% Similarity=0.252 Sum_probs=101.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccccc-CCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHh-HHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL-DPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRAT-LEEI 389 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl-d~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~t-l~ei 389 (536)
+|+++|.+|||||||++++++..+.. .+ ..|+ +.....+.+ ++. .+.+|||+|... |... ...+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y-~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~---------~~~~~~~~~ 69 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QY-TPTIEDFHRKLYSI-RGEVYQLDILDTSGNHP---------FPAMRRLSI 69 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CC-CCChhHhEEEEEEE-CCEEEEEEEEECCCChh---------hhHHHHHHh
Confidence 58999999999999999998765542 22 2222 223333444 453 567999999721 2221 1235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhc---------CCCCCCEEEEEEcCCCCCCh----hHHHHHh--ccCCCEE
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSEL---------DVSSIPKLMIWNKVDKVCDP----QKVKLEA--QKREDVV 454 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l---------~~~~~piIvVlNKiDl~~~~----~~~~~~~--~~~~~~v 454 (536)
..+|++++|+|+++..+.+....+...+... ...++|+|+|+||+|+.... +...... ....+++
T Consensus 70 ~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 70 LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEE
Confidence 6899999999999876655544443333222 22468999999999997421 1111111 1235799
Q ss_pred EEeccCCCCHHHHHHHHHHHhc
Q 009371 455 CISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~ 476 (536)
++||++|.|+++++++|.....
T Consensus 150 evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998663
No 147
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=3.2e-16 Score=150.07 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=100.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccccc-CCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL-DPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl-d~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
+|+++|.+|||||||++++.+..+..... .|. +.....+.. ++ ..+.+|||+|.-. +.. ....+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~---------~~~l~~~~~ 69 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYE--PTVFENYVHDIFV-DGLHIELSLWDTAGQEE---------FDRLRSLSY 69 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccC--CcceeeeEEEEEE-CCEEEEEEEEECCCChh---------ccccccccc
Confidence 58999999999999999999876532211 122 112223333 34 3678999999721 211 11235
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----------------HHHhc-cC
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----------------KLEAQ-KR 450 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----------------~~~~~-~~ 450 (536)
..+|++++|+|++++.+.+... .+...+... ..+.|+++|+||+|+....... ..... ..
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 148 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA 148 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 7899999999999987665543 233333322 2478999999999997543211 11111 22
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 451 EDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 451 ~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
.+++++||++|.|+++++.+|.+.+..
T Consensus 149 ~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 149 LRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred CEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 578999999999999999999987754
No 148
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=4.6e-16 Score=151.16 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=97.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc--cc-cccccccCCeeEEEEEe--------------------------CC-----
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL--AE-DRLFATLDPTTRRVQMK--------------------------NG----- 359 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~--~~-~~~~~Tld~ttr~i~l~--------------------------~g----- 359 (536)
.|+++|+.|+|||||+.+|++.... .. .....++........+. .+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 5899999999999999999875210 00 00011111110000000 02
Q ss_pred -eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 360 -GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 360 -~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
..+.||||||+ ......++..+..+|++++|+|++.+. ..+....+. .+...+ ..|+++|+||+|+.
T Consensus 82 ~~~i~~iDtPG~--------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~~~~~--~~~iiivvNK~Dl~ 150 (203)
T cd01888 82 VRHVSFVDCPGH--------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-ALEIMG--LKHIIIVQNKIDLV 150 (203)
T ss_pred ccEEEEEECCCh--------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HHHHcC--CCcEEEEEEchhcc
Confidence 67899999997 123345666778899999999998742 233333332 233332 24789999999997
Q ss_pred CChhH------HHHHhc----cCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 438 CDPQK------VKLEAQ----KREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 438 ~~~~~------~~~~~~----~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
..... ...... ...+++++||++|+|+++|+++|.+.+..
T Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 151 KEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred CHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 64321 111111 24679999999999999999999987765
No 149
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.69 E-value=6.3e-16 Score=148.49 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=101.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCC-eeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHh-HHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP-TTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRAT-LEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~-ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~t-l~e 388 (536)
.+|+++|..|||||||++++....+.... ..|... ....+.+ ++. .+.+|||+|. +.|... -..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~---------e~~~~l~~~~ 71 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEY--IPTVFDNYSAQTAV-DGRTVSLNLWDTAGQ---------EEYDRLRTLS 71 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCC--CCceEeeeEEEEEE-CCEEEEEEEEECCCc---------hhhhhhhhhh
Confidence 47999999999999999999976553221 122211 1222333 443 5779999998 223322 224
Q ss_pred HHhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH----------------HH-HHhccC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK----------------VK-LEAQKR 450 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~----------------~~-~~~~~~ 450 (536)
+..+|++++|+|++++.+.+... .+...+... ..+.|+++|+||+|+...... .. ......
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 57899999999999987766553 343333332 257899999999999653210 00 111123
Q ss_pred -CCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 451 -EDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 451 -~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
.+++++||++|.|+++++.++.+.+..
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 479999999999999999999987643
No 150
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=145.76 Aligned_cols=158 Identities=28% Similarity=0.450 Sum_probs=113.0
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCc--cccccccccccCCeeEEEEEeC-CeeEEEeeccccc-ccchhhHHHHHHHhH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGAT--VLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFI-QKLPTTLVAAFRATL 386 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~--~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i-~~lp~~l~e~f~~tl 386 (536)
..+-|+++|.+|||||||||+|++.. +.++ ..++.|+.+.+.. +..+.++|.||+. ...|....+.+...+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS-----ktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTS-----KTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecC-----CCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 45789999999999999999999965 2222 2344555555422 2237899999984 556666677777655
Q ss_pred HHH----HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---H---Hhcc--CCC--
Q 009371 387 EEI----SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---L---EAQK--RED-- 452 (536)
Q Consensus 387 ~ei----~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~---~~~~--~~~-- 452 (536)
.++ ....++++++|+.++....+.+.+ +++.. .++|+++|+||+|.+...+..+ . .... ...
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~em~-~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDREMI-EFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHHHHH-HHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce
Confidence 544 335678899999999887776544 34444 3789999999999998654321 1 1111 112
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 453 VVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
++..|+.++.|+++|...|.+.+..
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhhc
Confidence 7899999999999999999987754
No 151
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.7e-16 Score=146.17 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=119.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.+++.++|.+|+|||+|+.+++...+.........++...+.+.+ +++ ++.+|||+|+ +.|++ +.++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGq---------e~frsv~~sy 75 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQ---------ESFRSVTRSY 75 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCc---------HHHHHHHHHH
Confidence 467999999999999999999988776544444456666677777 444 6789999998 66766 5677
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----HHHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----VKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----~~~~~~~~~~~v~vSAktg~G 463 (536)
++.|.++|+|+|++...+...+..|..-+++....+..+++++||+||....+. ..........+..+||++++|
T Consensus 76 Yr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~ 155 (216)
T KOG0098|consen 76 YRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAEN 155 (216)
T ss_pred hccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhh
Confidence 899999999999999877777776666666666678889999999999765322 222233556788999999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
+++.|..+...+-
T Consensus 156 VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 156 VEEAFINTAKEIY 168 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766553
No 152
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=4.3e-16 Score=148.34 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=99.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|.+|+|||||++++.+..+.....+.. .+.....+.+ ++. .+.+|||+|. +.|.. ....+.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~-~~~~~~~~~~-~~~~~~l~iwDt~G~---------~~~~~~~~~~~~ 71 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTV-FENYTASFEI-DEQRIELSLWDTSGS---------PYYDNVRPLCYP 71 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCce-EEEEEEEEEE-CCEEEEEEEEECCCc---------hhhhhcchhhcC
Confidence 69999999999999999999875532211111 1112233444 343 5679999997 22222 123467
Q ss_pred hccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----------------hHHHHHhccCC-
Q 009371 391 ESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----------------QKVKLEAQKRE- 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----------------~~~~~~~~~~~- 451 (536)
.+|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.... +..........
T Consensus 72 ~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~ 150 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE 150 (178)
T ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCC
Confidence 89999999999998776653 44544444433 478999999999985420 11111222343
Q ss_pred CEEEEeccCCCC-HHHHHHHHHHH
Q 009371 452 DVVCISALSGNG-LDEFCSAVQEK 474 (536)
Q Consensus 452 ~~v~vSAktg~G-IdeL~~~I~~~ 474 (536)
+++++||++|+| ++++|..+.+.
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHH
Confidence 789999999995 99999998773
No 153
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.69 E-value=5.9e-16 Score=148.16 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=101.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccC-CeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHh-HHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLD-PTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRAT-LEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld-~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~t-l~e 388 (536)
.+|+++|.+|+|||||++++.+..+... + ..|.. .....+.+ ++. .+.+|||+|. +.|... ...
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~-~-~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~---------e~~~~~~~~~ 73 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPEN-Y-VPTVFENYTASFEI-DTQRIELSLWDTSGS---------PYYDNVRPLS 73 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCc-c-CCceeeeeEEEEEE-CCEEEEEEEEECCCc---------hhhHhhhhhh
Confidence 4699999999999999999997655322 1 12221 22233444 443 5779999997 223322 234
Q ss_pred HHhccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----------------hHHHHHhccC
Q 009371 389 ISESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----------------QKVKLEAQKR 450 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----------------~~~~~~~~~~ 450 (536)
+..+|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.... +.........
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 6789999999999998776654 44444444433 478999999999985420 1111122234
Q ss_pred -CCEEEEeccCCCC-HHHHHHHHHHH
Q 009371 451 -EDVVCISALSGNG-LDEFCSAVQEK 474 (536)
Q Consensus 451 -~~~v~vSAktg~G-IdeL~~~I~~~ 474 (536)
.+++++||++|.| ++++|..+.+.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 3799999999998 99999988764
No 154
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=1.3e-15 Score=158.00 Aligned_cols=183 Identities=26% Similarity=0.231 Sum_probs=124.6
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-----------------------CCeeEEEeeccccc
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-----------------------NGGEFLLTDTVGFI 371 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-----------------------~g~~i~LiDTpG~i 371 (536)
|+++|.||+|||||+|+|++..+.+.+++|+|.+|+.+...+. .+.++.+|||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999998888899999999988765541 12478999999997
Q ss_pred ccchhhHHHHHHHhHHHHHhccceEEEEeCCCc-------------chHHHHHH--------------------------
Q 009371 372 QKLPTTLVAAFRATLEEISESSLLVHVVDISHP-------------LAEQQIEA-------------------------- 412 (536)
Q Consensus 372 ~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~-------------~~~~~~~~-------------------------- 412 (536)
....... ..-...+..++.||+++||+|++.. ....+++.
T Consensus 81 ~ga~~~~-glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~ 159 (318)
T cd01899 81 PGAHEGK-GLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADA 159 (318)
T ss_pred CCccchh-hHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432111 1123467789999999999999731 01111111
Q ss_pred ----------------------HHHHHhhcC---------------------CCCCCEEEEEEcCCCCCChhHHHH--Hh
Q 009371 413 ----------------------VDKVLSELD---------------------VSSIPKLMIWNKVDKVCDPQKVKL--EA 447 (536)
Q Consensus 413 ----------------------v~~vL~~l~---------------------~~~~piIvVlNKiDl~~~~~~~~~--~~ 447 (536)
+..+|++-. ...+|+|+|+||+|+......... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~ 239 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLK 239 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhh
Confidence 111111100 135799999999998654432221 12
Q ss_pred ccCCCEEEEeccCCCCHHHHHH-HHHHHhcccceEEEEeecC--C--hhHHHHHHHH
Q 009371 448 QKREDVVCISALSGNGLDEFCS-AVQEKLKDSMVWVEALVPF--D--KGELLSTIHQ 499 (536)
Q Consensus 448 ~~~~~~v~vSAktg~GIdeL~~-~I~~~l~~~~~~~~~~ip~--~--~~~l~~~i~~ 499 (536)
....+++++||+.+.|+++|.+ .+.+.+.... ++....|. + ....++|+++
T Consensus 240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~-~f~~~~~~~~~~~~~~~l~~i~d 295 (318)
T cd01899 240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS-DFEITDELGLSEKQKEALESIRD 295 (318)
T ss_pred CCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC-CceecccCCCCHHHHHHHHHHHH
Confidence 2346799999999999999998 6999997654 34444444 2 2456778775
No 155
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.68 E-value=1.3e-15 Score=136.75 Aligned_cols=151 Identities=27% Similarity=0.294 Sum_probs=93.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
++|+++|++|+|||||+|+|.+........++.+.+.....+.. ++ ..+.+|||||+....+ .. .....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~------~~--~~~~~ 72 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRA------IR--RLYYR 72 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchH------HH--HHHHh
Confidence 46999999999999999999988754444444444444444444 55 5788999999633211 11 11234
Q ss_pred hccceEEEEeCCCc-chHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHH--HHhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHP-LAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVK--LEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~-~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~--~~~~~~~~~v~vSAktg~GI 464 (536)
.++.++.++|.... ....... .+...+......+.|+++|+||+|+.... .... .......+++++||++|.|+
T Consensus 73 ~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 73 AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNI 152 (161)
T ss_pred hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCH
Confidence 45666666666544 1111111 11122222222278999999999997642 1111 11223467999999999999
Q ss_pred HHHHHHHH
Q 009371 465 DEFCSAVQ 472 (536)
Q Consensus 465 deL~~~I~ 472 (536)
++++++|.
T Consensus 153 ~~~~~~l~ 160 (161)
T TIGR00231 153 DSAFKIVE 160 (161)
T ss_pred HHHHHHhh
Confidence 99999874
No 156
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.68 E-value=9.7e-16 Score=148.98 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=101.8
Q ss_pred EccCCCChHHHHHhhhCCccccccccccccC--CeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHH-hHHHHHhcc
Q 009371 318 VGYTNAGKSTLLNRLTGATVLAEDRLFATLD--PTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESS 393 (536)
Q Consensus 318 VG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld--~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aD 393 (536)
+|..|||||||+++++...+.... ..|+. .....+.+. ....+.+|||+|. +.|.. ....+..+|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~--~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~---------e~~~~l~~~~~~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIRFNVWDTAGQ---------EKFGGLRDGYYIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEECCEEEEEEEEECCCc---------hhhhhhhHHHhcCCC
Confidence 699999999999999865543211 12322 222233331 1246789999997 22332 224568899
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh---hHHHHHhccCCCEEEEeccCCCCHHHHHHH
Q 009371 394 LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP---QKVKLEAQKREDVVCISALSGNGLDEFCSA 470 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~---~~~~~~~~~~~~~v~vSAktg~GIdeL~~~ 470 (536)
++++|+|+++..+......|...+.... .+.|+++|+||+|+.... +..........+++++||++|.||+++|.+
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999877666655554444432 478999999999985432 112222334578999999999999999999
Q ss_pred HHHHhccc
Q 009371 471 VQEKLKDS 478 (536)
Q Consensus 471 I~~~l~~~ 478 (536)
|...+...
T Consensus 149 l~~~i~~~ 156 (200)
T smart00176 149 LARKLIGD 156 (200)
T ss_pred HHHHHHhc
Confidence 99877543
No 157
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=8.7e-16 Score=152.66 Aligned_cols=153 Identities=20% Similarity=0.130 Sum_probs=101.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||++++.+..+.....+... ......+.+ ++ ..+.+|||+|. +.|.. ....+
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~-~~~~~~i~~-~~~~v~l~iwDTaG~---------e~~~~~~~~~~ 82 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTAGLET-EEQRVELSLWDTSGS---------PYYDNVRPLCY 82 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCcCCcee-eeeEEEEEE-CCEEEEEEEEeCCCc---------hhhHHHHHHHc
Confidence 4799999999999999999997755422212111 112223333 34 35779999997 22332 22356
Q ss_pred HhccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----------------hHHHHHhccCC
Q 009371 390 SESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----------------QKVKLEAQKRE 451 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----------------~~~~~~~~~~~ 451 (536)
..+|++++|+|++++.+.... ..|...+.... .+.|+|+|+||+|+.... +........+.
T Consensus 83 ~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~ 161 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA 161 (232)
T ss_pred CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence 899999999999988766542 34433343332 468999999999985320 11112222344
Q ss_pred -CEEEEeccCCC-CHHHHHHHHHHHhcc
Q 009371 452 -DVVCISALSGN-GLDEFCSAVQEKLKD 477 (536)
Q Consensus 452 -~~v~vSAktg~-GIdeL~~~I~~~l~~ 477 (536)
+++++||++|+ |++++|..+...+..
T Consensus 162 ~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 162 EVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 58999999998 899999998876543
No 158
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.68 E-value=4.8e-16 Score=145.35 Aligned_cols=151 Identities=21% Similarity=0.240 Sum_probs=98.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|++|+|||||++++.+..+... ...+..+.....+.+ ++. .+.+|||||...... .. -..+..
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~------~~--~~~~~~ 71 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEE-YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR------LR--PLSYPM 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc------cc--cccCCC
Confidence 589999999999999999998765322 111111222223333 443 456999999732110 11 123567
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----------------HHHhc-cCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----------------KLEAQ-KRED 452 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----------------~~~~~-~~~~ 452 (536)
+|++++|+|.+++.+.+... .+...+... ..+.|+++|+||+|+.+..... ..... ...+
T Consensus 72 ~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 72 TDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 89999999999876655443 344444443 4678999999999986542111 01111 2246
Q ss_pred EEEEeccCCCCHHHHHHHHHHHh
Q 009371 453 VVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l 475 (536)
++++||++|.|++++++.+.+.+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 89999999999999999987654
No 159
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.68 E-value=9.9e-16 Score=143.33 Aligned_cols=151 Identities=16% Similarity=0.193 Sum_probs=97.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHh-HHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRAT-LEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~t-l~ei 389 (536)
.+|+++|++|||||||++++.+..+.. .+..+..+.....+.+ ++. .+.+|||+|.-. +... ...+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEV-DGKQVELALWDTAGQED---------YDRLRPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccccceEEEEEE-CCEEEEEEEEeCCCchh---------hhhcccccc
Confidence 369999999999999999999865432 1211112222334444 443 567999999721 1111 1235
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH----------------HH-H-hccC
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV----------------KL-E-AQKR 450 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~----------------~~-~-~~~~ 450 (536)
..+|++++|+|+++..+.+... .+...+... ..+.|+++|+||+|+....... .. . ....
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 7899999999999875544432 222223322 2478999999999986532110 00 0 1123
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHh
Q 009371 451 EDVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 451 ~~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
.+++++||++|.|+++++++|.+..
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHHh
Confidence 4789999999999999999998653
No 160
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.68 E-value=9.8e-16 Score=145.30 Aligned_cols=146 Identities=27% Similarity=0.396 Sum_probs=91.0
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccc--cccccccccCCeeEEEEE-eCCeeEEEeecccccccc-hhhHHHHHHHh-
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVL--AEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGFIQKL-PTTLVAAFRAT- 385 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~--~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~~l-p~~l~e~f~~t- 385 (536)
..+.|+|+|++|+|||||+|+|++.... ....+ +++..+.+ .-+..+.+|||||+.... +......+...
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTP-----GRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-----CcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 3568999999999999999999987421 11111 22222221 112368999999985321 11112223322
Q ss_pred ---HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------HHHHhc---cCCCE
Q 009371 386 ---LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------VKLEAQ---KREDV 453 (536)
Q Consensus 386 ---l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------~~~~~~---~~~~~ 453 (536)
+.....+|++++|+|++++........+ ..+.. .++|+++|+||+|+....+. ...... ...++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~-~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEML-EWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 2222346899999999987766655433 33333 46899999999999764321 111111 12479
Q ss_pred EEEeccCCCCHH
Q 009371 454 VCISALSGNGLD 465 (536)
Q Consensus 454 v~vSAktg~GId 465 (536)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 161
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=2.4e-15 Score=143.49 Aligned_cols=160 Identities=24% Similarity=0.369 Sum_probs=101.9
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeeccccccc-chhhHHHHHHHh---
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQK-LPTTLVAAFRAT--- 385 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~-lp~~l~e~f~~t--- 385 (536)
..+.|+++|.+|||||||+|+|++..+.... ....++++.+.+. -+..+.+|||||+... .+....+.+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~---~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLART---SKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccc---cCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4578999999999999999999986422111 1111233333332 2467899999997432 222222223222
Q ss_pred -HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH------HHHhc-cCCCEEEEe
Q 009371 386 -LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV------KLEAQ-KREDVVCIS 457 (536)
Q Consensus 386 -l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~------~~~~~-~~~~~v~vS 457 (536)
+.....++++++|+|++.+....... +..++.. .++|+++|+||+|+....+.. ..... ...+++++|
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~-i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQ-MIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHH-HHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 22223446788999988776544432 2334443 368999999999997643211 11111 146899999
Q ss_pred ccCCCCHHHHHHHHHHHhcc
Q 009371 458 ALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 458 Aktg~GIdeL~~~I~~~l~~ 477 (536)
|++|.|+++++++|.+.+.+
T Consensus 176 a~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 176 SLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999988764
No 162
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.67 E-value=4.9e-16 Score=173.42 Aligned_cols=150 Identities=26% Similarity=0.323 Sum_probs=107.2
Q ss_pred ccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEE
Q 009371 319 GYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHV 398 (536)
Q Consensus 319 G~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlV 398 (536)
|++|||||||+|+|+|..+.+.+.++.|.+...+.+.+ ++..+.++||||+.+..+....+.+.........+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 89999999999999998877778888888877777776 67789999999986543322222222222223478999999
Q ss_pred EeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HHHHHhccCCCEEEEeccCCCCHHHHHHHHHHH
Q 009371 399 VDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KVKLEAQKREDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 399 vD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
+|+++.. .......+..+ .++|+++|+||+|+.+... ........+.+++++||++|.|++++++++.+.
T Consensus 80 vDat~le--r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 80 VDASNLE--RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred ecCCcch--hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9998743 22222232222 3789999999999864321 112222345789999999999999999999876
Q ss_pred h
Q 009371 475 L 475 (536)
Q Consensus 475 l 475 (536)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 4
No 163
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.67 E-value=2.8e-15 Score=143.94 Aligned_cols=142 Identities=18% Similarity=0.107 Sum_probs=89.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCC-ccccccc---------------cccccCCeeEEEEEeCCeeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA-TVLAEDR---------------LFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~-~~~~~~~---------------~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~ 376 (536)
..|+++|.+|+|||||+++|++. ....... ...+.......+.. ++..+.+|||||+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 36999999999999999999862 1111111 11222222233333 567899999999821
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--H---HHHh----
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--V---KLEA---- 447 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~---~~~~---- 447 (536)
........+..+|++++|+|+++.........+. .+...++|+++|+||+|+...... . ....
T Consensus 78 ----~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~----~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (194)
T cd01891 78 ----FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLK----KALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELG 149 (194)
T ss_pred ----HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHH----HHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence 1122345578899999999998754333222222 222236899999999999653211 1 1110
Q ss_pred ----ccCCCEEEEeccCCCCHHHH
Q 009371 448 ----QKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 448 ----~~~~~~v~vSAktg~GIdeL 467 (536)
....+++++||++|.|+.++
T Consensus 150 ~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 150 ATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred CccccCccCEEEeehhcccccccc
Confidence 12468999999999887544
No 164
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=2.1e-15 Score=133.37 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=99.4
Q ss_pred EEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccce
Q 009371 317 LVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLL 395 (536)
Q Consensus 317 IVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDli 395 (536)
++|++|+|||||+|+|++..........+..+......... .+..+.+|||||.... .......+..+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~~~~~ 72 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF--------RSLRRLYYRGADGI 72 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHH--------HhHHHHHhcCCCEE
Confidence 58999999999999999876521222112222222222221 2557899999997321 11223456789999
Q ss_pred EEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCChhHH------HHHhccCCCEEEEeccCCCCHHHHH
Q 009371 396 VHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDPQKV------KLEAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 396 LlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~~~~------~~~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
++|+|++++........+ ...+......++|+++|+||+|+....... ........+++++||+++.|+++++
T Consensus 73 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 152 (157)
T cd00882 73 ILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELF 152 (157)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHH
Confidence 999999987665554433 223334455689999999999997654322 1223345789999999999999999
Q ss_pred HHHH
Q 009371 469 SAVQ 472 (536)
Q Consensus 469 ~~I~ 472 (536)
++|.
T Consensus 153 ~~l~ 156 (157)
T cd00882 153 EELA 156 (157)
T ss_pred HHHh
Confidence 9875
No 165
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=1.6e-15 Score=171.65 Aligned_cols=152 Identities=20% Similarity=0.349 Sum_probs=107.6
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe---CCeeEEEeecccccccchhhHHHHHHHh-H
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK---NGGEFLLTDTVGFIQKLPTTLVAAFRAT-L 386 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~---~g~~i~LiDTpG~i~~lp~~l~e~f~~t-l 386 (536)
..|.|+|+|++|+|||||+++|.+..+......+.|.+.....+.+. .+..+.||||||+ +.|..+ .
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh---------e~F~~mr~ 313 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH---------EAFSSMRS 313 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH---------HHHHHHHH
Confidence 34789999999999999999999876654433344444333333332 3578999999998 334443 3
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-hHHHHHh----------ccCCCEEE
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-QKVKLEA----------QKREDVVC 455 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-~~~~~~~----------~~~~~~v~ 455 (536)
..+..+|++++|+|++++...+..+.+.. +...++|+|+|+||+|+.... +...... ....++++
T Consensus 314 rg~~~aDiaILVVDA~dGv~~QT~E~I~~----~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~ 389 (742)
T CHL00189 314 RGANVTDIAILIIAADDGVKPQTIEAINY----IQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIP 389 (742)
T ss_pred HHHHHCCEEEEEEECcCCCChhhHHHHHH----HHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEE
Confidence 46788999999999988766665555443 233578999999999997542 1111110 11358999
Q ss_pred EeccCCCCHHHHHHHHHHHh
Q 009371 456 ISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 456 vSAktg~GIdeL~~~I~~~l 475 (536)
+||++|.|+++|+++|....
T Consensus 390 VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 390 ISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EECCCCCCHHHHHHhhhhhh
Confidence 99999999999999987654
No 166
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.66 E-value=1.2e-15 Score=169.83 Aligned_cols=149 Identities=26% Similarity=0.359 Sum_probs=104.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
.|+|+++|++|+|||||+++|.+..+......+.|.+.....+.+.++..+.+|||||+.+ |.. ....+.
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~---------F~~~r~rga~ 157 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA---------FTSMRARGAK 157 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcc---------hhhHHHhhhc
Confidence 4789999999999999999999877655444444544444445553445899999999832 222 223467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-hHHHHHh----------ccCCCEEEEecc
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-QKVKLEA----------QKREDVVCISAL 459 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-~~~~~~~----------~~~~~~v~vSAk 459 (536)
.+|++++|+|++++...+..+.+.. ....++|+++++||+|+.... +...... ....+++++||+
T Consensus 158 ~aDiaILVVda~dgv~~qT~e~i~~----~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 158 VTDIVVLVVAADDGVMPQTIEAISH----AKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred cCCEEEEEEECCCCCCHhHHHHHHH----HHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 7999999999988766666554432 223478999999999986532 1111110 012469999999
Q ss_pred CCCCHHHHHHHHHH
Q 009371 460 SGNGLDEFCSAVQE 473 (536)
Q Consensus 460 tg~GIdeL~~~I~~ 473 (536)
+|.|+++|+++|..
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999999864
No 167
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.66 E-value=2.2e-15 Score=141.01 Aligned_cols=144 Identities=18% Similarity=0.175 Sum_probs=94.5
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhcc
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESS 393 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aD 393 (536)
|+++|.+|||||||++++.+..+... ...|.......+.. .+..+.+|||+|... +.. ....+..+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~--~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~---------~~~~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES--VVPTTGFNSVAIPT-QDAIMELLEIGGSQN---------LRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc--ccccCCcceEEEee-CCeEEEEEECCCCcc---------hhHHHHHHHhhCC
Confidence 78999999999999999997654322 12232222233332 456889999999722 111 224578899
Q ss_pred ceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH--H------HH-hccCCCEEEEeccC---
Q 009371 394 LLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV--K------LE-AQKREDVVCISALS--- 460 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~--~------~~-~~~~~~~v~vSAkt--- 460 (536)
++++|+|++++....... .+..++.. ..++|+++|+||+|+....... . .. ......++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s 147 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGS 147 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCC
Confidence 999999998875433222 22333322 2579999999999986543211 1 01 11235678899999
Q ss_pred ---CCCHHHHHHHHH
Q 009371 461 ---GNGLDEFCSAVQ 472 (536)
Q Consensus 461 ---g~GIdeL~~~I~ 472 (536)
++|++++++.+.
T Consensus 148 ~~~~~~v~~~~~~~~ 162 (164)
T cd04162 148 PSRMEAVKDLLSQLI 162 (164)
T ss_pred hhHHHHHHHHHHHHh
Confidence 999999998875
No 168
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.66 E-value=3.5e-15 Score=139.28 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=97.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|.+|||||||++++....+... .. ++.......+.+ +|. .+.+|||+|... . ..+..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~-~~~~~~~~~i~~-~~~~~~l~i~D~~g~~~-------~------~~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ES-PEGGRFKKEVLV-DGQSHLLLIRDEGGAPD-------A------QFASW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CC-CCccceEEEEEE-CCEEEEEEEEECCCCCc-------h------hHHhc
Confidence 589999999999999999876544321 11 122222334555 553 477999999821 0 12467
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCC--hh----HH-HHHhc-cCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCD--PQ----KV-KLEAQ-KREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~--~~----~~-~~~~~-~~~~~v~vSAktg~ 462 (536)
+|++++|+|.+++.+.+....+...+... +..+.|+++|+||+|+... .. .. ..... ...+++++||++|.
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 99999999999988776654443333333 3356899999999998531 11 11 11112 24689999999999
Q ss_pred CHHHHHHHHHHH
Q 009371 463 GLDEFCSAVQEK 474 (536)
Q Consensus 463 GIdeL~~~I~~~ 474 (536)
||++++..+.+.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999998754
No 169
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.65 E-value=5e-15 Score=150.46 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=120.8
Q ss_pred EEEEccCCCChHHHHHhhhC---Cccc---c------------ccccccccCCeeEEEEEeCCeeEEEeecccccccchh
Q 009371 315 VSLVGYTNAGKSTLLNRLTG---ATVL---A------------EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g---~~~~---~------------~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~ 376 (536)
|+++|++|+|||||+++|+. .... + +.....|++.....+.+ ++..+.++||||+.+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~d---- 76 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVD---- 76 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHH----
Confidence 89999999999999999963 2100 0 01112233333344444 778999999999832
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEE
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCI 456 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~v 456 (536)
....+...+..+|++++|+|+..+...+....+.. +. ..++|+++++||+|+..
T Consensus 77 ----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~-~~---~~~~p~ivviNK~D~~~------------------ 130 (270)
T cd01886 77 ----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQ-AD---RYNVPRIAFVNKMDRTG------------------ 130 (270)
T ss_pred ----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHH-HH---HcCCCEEEEEECCCCCC------------------
Confidence 23345566788999999999988766554443332 23 34689999999999753
Q ss_pred eccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEcc-Cc-eEEEEEcCHHHHHHHHHHHHhh
Q 009371 457 SALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTE-NG-TLVKAHVPLRFARLLTPMRQMC 534 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~-~g-~~~~~~lp~~~~~~~~~~~~~l 534 (536)
...+.+++.|.+.+.... +...+|.+.+.-+..+.+....+.+.|.+ +| ..-...+|.++.+.+.++|..|
T Consensus 131 -----a~~~~~~~~l~~~l~~~~--~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l 203 (270)
T cd01886 131 -----ADFFRVVEQIREKLGANP--VPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREEL 203 (270)
T ss_pred -----CCHHHHHHHHHHHhCCCc--eEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHH
Confidence 235566677777766543 33446776655555555555556666733 23 4555779999999999998876
Q ss_pred h
Q 009371 535 I 535 (536)
Q Consensus 535 ~ 535 (536)
+
T Consensus 204 ~ 204 (270)
T cd01886 204 I 204 (270)
T ss_pred H
Confidence 3
No 170
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=3.1e-15 Score=144.90 Aligned_cols=138 Identities=19% Similarity=0.174 Sum_probs=90.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccc----------------ccccccccCCeeEEEEEeCCeeEEEeecccccccchhh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLA----------------EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT 377 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~----------------~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~ 377 (536)
.|+++|+.|+|||||+++|++..... +.....|.+.....+. .++..+.++||||+.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHH------
Confidence 59999999999999999998531100 0011222222222222 356789999999982
Q ss_pred HHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhHHHH-------Hh--
Q 009371 378 LVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQKVKL-------EA-- 447 (536)
Q Consensus 378 l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~~~~-------~~-- 447 (536)
.....+...+..+|++++|+|+..+...+..+.+. .+.. .++| +|+|+||+|+....+.... ..
T Consensus 77 --~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~ 150 (195)
T cd01884 77 --DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSK 150 (195)
T ss_pred --HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHH-HHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 33455666778899999999998876655544433 3333 3566 7799999999754322111 10
Q ss_pred ----ccCCCEEEEeccCCCCH
Q 009371 448 ----QKREDVVCISALSGNGL 464 (536)
Q Consensus 448 ----~~~~~~v~vSAktg~GI 464 (536)
....+++++||++|.|+
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 02368999999999985
No 171
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=2.1e-15 Score=132.88 Aligned_cols=114 Identities=35% Similarity=0.507 Sum_probs=83.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhH-HHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTL-VAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l-~e~f~~tl~ei~~ 391 (536)
+|+|+|++|||||||+|+|++.+. .+.+..++|..+....+.+ ++..+.++||||+.+...... ...+..+++.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 489999999999999999998643 4556666676665555555 788889999999976544332 2345567778889
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEc
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNK 433 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNK 433 (536)
+|++++|+|++++......+ +++.+. .++|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~----~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKN----ILRELK-NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHH----HHHHHH-TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCCHHHHH----HHHHHh-cCCCEEEEEcC
Confidence 99999999987743333333 233333 57899999998
No 172
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.65 E-value=2e-15 Score=172.16 Aligned_cols=149 Identities=28% Similarity=0.380 Sum_probs=105.9
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
..|.|+|+|+.|+|||||+++|.+..+......+.|.+.....+.+ ++..+.||||||+.. |.. ....+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~---------F~~m~~rga 358 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEA---------FTAMRARGA 358 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE-CCEEEEEEECCCCcc---------chhHHHhhh
Confidence 3578999999999999999999887665444344444444445555 578899999999832 222 12345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-hHHH-HHh---------ccCCCEEEEec
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-QKVK-LEA---------QKREDVVCISA 458 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-~~~~-~~~---------~~~~~~v~vSA 458 (536)
..+|++++|+|+.++...+..+.+.. ....++|+|+|+||+|+.... +... ... ....+++++||
T Consensus 359 ~~aDiaILVVdAddGv~~qT~e~i~~----a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 359 QVTDIVVLVVAADDGVMPQTIEAINH----AKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred hhCCEEEEEEECCCCCCHhHHHHHHH----HHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 77899999999998766665554432 223478999999999996532 1111 100 12357999999
Q ss_pred cCCCCHHHHHHHHHH
Q 009371 459 LSGNGLDEFCSAVQE 473 (536)
Q Consensus 459 ktg~GIdeL~~~I~~ 473 (536)
++|.|+++|+++|..
T Consensus 435 ktG~GI~eLle~I~~ 449 (787)
T PRK05306 435 KTGEGIDELLEAILL 449 (787)
T ss_pred CCCCCchHHHHhhhh
Confidence 999999999999874
No 173
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.65 E-value=2.9e-15 Score=140.70 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=95.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|.+|+|||||++++.+..+.. .+..+..+.....+.+ ++ ..+.+|||||... +.. .-..+.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPT-EYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDE---------FDKLRPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEE-CCEEEEEEEEECCCChh---------hccccccccC
Confidence 58999999999999999998765432 2222222222233444 34 3567899999822 111 112357
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----------------HHHHHhccC-C
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----------------KVKLEAQKR-E 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----------------~~~~~~~~~-~ 451 (536)
.+|++++|+|++++.+.+... .+...+... ..+.|+++|+||+|+..... ......... .
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 149 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGAC 149 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCC
Confidence 899999999999886654432 233333322 24689999999999864321 011111123 4
Q ss_pred CEEEEeccCCCCHHHHHHHHH
Q 009371 452 DVVCISALSGNGLDEFCSAVQ 472 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~ 472 (536)
+++++||++|.|++++++.+.
T Consensus 150 ~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 150 EYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred eEEEEeCCCCCCHHHHHHHHH
Confidence 799999999999999998874
No 174
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.7e-15 Score=158.78 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=116.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccc-cchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQ-KLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~-~lp~~l~e~f~~tl~ei~ 390 (536)
+.|+|+|+||+|||||+|+|+..+.. +...+++|-|.-.-.+.+ +|.++.++||+|..+ .........+.+....+.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIERARKRIE 347 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHHHHHHHh
Confidence 56999999999999999999988765 344455555544444554 999999999999987 444555567788888899
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcC---------CCCCCEEEEEEcCCCCCChhHHHH-----Hh---c-cCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELD---------VSSIPKLMIWNKVDKVCDPQKVKL-----EA---Q-KRED 452 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~---------~~~~piIvVlNKiDl~~~~~~~~~-----~~---~-~~~~ 452 (536)
.||++++|+|+....+.++... .+.+...+ ....|+|+|.||+|+...-..... .. . .+..
T Consensus 348 ~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i 426 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPI 426 (531)
T ss_pred hcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccce
Confidence 9999999999954444333332 22233322 134789999999999876221111 01 1 2234
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhcccc
Q 009371 453 VVCISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
.+++||++++|++.|..+|.+.+....
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 556999999999999999999887654
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.65 E-value=2.8e-15 Score=167.23 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=107.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc---ccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV---LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~---~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.|+++|++|+|||||+++|+|... ..+...+.|.+.....+.+ ++..+.+|||||+ ......++..+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGh--------e~f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGH--------EKFISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCH--------HHHHHHHHhhhc
Confidence 589999999999999999998532 1122334455554445555 4578999999997 223345666778
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhH------HHHHh-c----cCCCEEEEec
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQK------VKLEA-Q----KREDVVCISA 458 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~------~~~~~-~----~~~~~v~vSA 458 (536)
.+|++++|+|++++...+..+.+. ++..+ ++| +++|+||+|+.+.... ..... . ...+++++||
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~-il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA 148 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLA-VLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSA 148 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHH-HHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeC
Confidence 999999999999876555554442 34443 567 9999999999864321 11111 1 1468999999
Q ss_pred cCCCCHHHHHHHHHHHhcc
Q 009371 459 LSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~l~~ 477 (536)
++|.|+++++++|.+.+..
T Consensus 149 ~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 149 KTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCchhHHHHHHHHHHh
Confidence 9999999999999887654
No 176
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.64 E-value=1.8e-15 Score=151.93 Aligned_cols=171 Identities=25% Similarity=0.313 Sum_probs=111.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccc-ccccCCeeEEEEEeCCeeEEEeecccccccchh---hHHHHH-HHhHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRL-FATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT---TLVAAF-RATLEE 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~-~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~---~l~e~f-~~tl~e 388 (536)
.|+++|.||||||||.|.+.|..+.+...- -+|.....+-+ ..+..+++|.||||.+..-.+ .+...+ ......
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~-ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGII-TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEE-ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHH
Confidence 599999999999999999999887643222 22211122222 235678999999999864332 222222 234556
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----------------HH-Hhcc-
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----------------KL-EAQK- 449 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----------------~~-~~~~- 449 (536)
+..||+++.|+|+++.-..-... +...++.. .++|-++|+||+|.......+ +. ....
T Consensus 153 ~q~AD~vvVv~Das~tr~~l~p~-vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~ 229 (379)
T KOG1423|consen 153 AQNADCVVVVVDASATRTPLHPR-VLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTD 229 (379)
T ss_pred HhhCCEEEEEEeccCCcCccChH-HHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhcc
Confidence 78899999999999643322222 22333333 368999999999987643111 00 0001
Q ss_pred ---------------CCCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecC
Q 009371 450 ---------------REDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPF 488 (536)
Q Consensus 450 ---------------~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~ 488 (536)
+..+|++||++|+||++|.++|...........+.-++.
T Consensus 230 ~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T 283 (379)
T KOG1423|consen 230 VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT 283 (379)
T ss_pred CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence 224899999999999999999999888776555544443
No 177
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=2.9e-15 Score=144.95 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=95.5
Q ss_pred CEEEEEccCCCChHHHHH-hhhCCccccccccccccCCeeE-------EE-------EEeCCe--eEEEeecccccccch
Q 009371 313 PVVSLVGYTNAGKSTLLN-RLTGATVLAEDRLFATLDPTTR-------RV-------QMKNGG--EFLLTDTVGFIQKLP 375 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlN-aL~g~~~~~~~~~~~Tld~ttr-------~i-------~l~~g~--~i~LiDTpG~i~~lp 375 (536)
.+|+++|..|+|||||+. .+.+..+. .+.......||.+ .. ...+|. .+.+|||+|...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~-~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLT-QYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcc-cccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh---
Confidence 469999999999999996 55543221 1100011122221 10 012343 677999999832
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCC---------------
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCD--------------- 439 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~--------------- 439 (536)
.+. ...+..+|++++|+|++++.+.+... .|...+.... .+.|+++|+||+|+...
T Consensus 79 -----~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 79 -----KDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred -----hhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccc
Confidence 111 12467899999999999987766553 3444444332 47899999999998631
Q ss_pred ---------hhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHH
Q 009371 440 ---------PQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 440 ---------~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
.+........+.+++++||++|.|++++++.+.+.
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 01112222345689999999999999999988753
No 178
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.64 E-value=7.3e-15 Score=134.44 Aligned_cols=153 Identities=26% Similarity=0.350 Sum_probs=94.8
Q ss_pred EEEEccCCCChHHHHHhhhCCccc--cccccccccCCeeEEEEEeCCeeEEEeeccccccc-chhhHHHHHHH----hHH
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVL--AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK-LPTTLVAAFRA----TLE 387 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~--~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~-lp~~l~e~f~~----tl~ 387 (536)
|+++|++|||||||+|.|++.... .....+.|.. ...+. ....+.++||||+... .+....+.+.. .+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQL--INFFN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCccee--EEEEE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 799999999999999999953322 2211111111 11122 2337889999998432 12212222222 222
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------HHHH---hccCCCEEEEec
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------VKLE---AQKREDVVCISA 458 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------~~~~---~~~~~~~v~vSA 458 (536)
....++++++++|........... +..++... +.|+++|+||+|+...... .... .....+++++||
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~-~~~~l~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLE-MLDWLEEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHH-HHHHHHHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 223567889999998765443333 33444443 5799999999999654321 1111 123468999999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 009371 459 LSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~l 475 (536)
+++.|+++++++|.+.+
T Consensus 154 ~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 154 LKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998753
No 179
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.64 E-value=3.5e-15 Score=137.63 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=106.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|.+|+|||||++++.+..+.....+....+.....+.. ++. .+.+|||+|.... ..+. ...+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~------~~~~--~~~~~~ 71 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERF------DSLR--DIFYRN 71 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGG------HHHH--HHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccccc------cccc--cccccc
Confidence 5899999999999999999987654322221112333344444 344 5779999997221 1111 123678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|.+++.+......|...+......+.|+++|+||+|+.... +..........+++.+||+++.|+.+
T Consensus 72 ~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 72 SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKE 151 (162)
T ss_dssp ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHH
T ss_pred cccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHH
Confidence 9999999999988776666655555555554568999999999987621 11222333458999999999999999
Q ss_pred HHHHHHHHhc
Q 009371 467 FCSAVQEKLK 476 (536)
Q Consensus 467 L~~~I~~~l~ 476 (536)
++..+.+.+.
T Consensus 152 ~f~~~i~~i~ 161 (162)
T PF00071_consen 152 IFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 180
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.64 E-value=1.9e-15 Score=147.37 Aligned_cols=142 Identities=25% Similarity=0.199 Sum_probs=91.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccc-------------------------------cccccccCCeeEEEEEeCCeeE
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAE-------------------------------DRLFATLDPTTRRVQMKNGGEF 362 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~-------------------------------~~~~~Tld~ttr~i~l~~g~~i 362 (536)
+|+|+|++|||||||+++|+...-.+. .....|.+.....+.+ ++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 389999999999999999975422111 0122344444444444 67789
Q ss_pred EEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-
Q 009371 363 LLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ- 441 (536)
Q Consensus 363 ~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~- 441 (536)
.++||||+. .....+...+..+|++++|+|++.+....... ...++...+ ..++|+|+||+|+.....
T Consensus 80 ~liDTpG~~--------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~~~--~~~iIvviNK~D~~~~~~~ 148 (208)
T cd04166 80 IIADTPGHE--------QYTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSLLG--IRHVVVAVNKMDLVDYSEE 148 (208)
T ss_pred EEEECCcHH--------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHHcC--CCcEEEEEEchhcccCCHH
Confidence 999999972 22233555678899999999998876544333 223333332 235778999999975321
Q ss_pred HH-------HHH-hc---cCCCEEEEeccCCCCHHHH
Q 009371 442 KV-------KLE-AQ---KREDVVCISALSGNGLDEF 467 (536)
Q Consensus 442 ~~-------~~~-~~---~~~~~v~vSAktg~GIdeL 467 (536)
.. ... .. ...+++++||++|.|+++.
T Consensus 149 ~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 149 VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 11 100 11 1245899999999999853
No 181
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.2e-15 Score=144.34 Aligned_cols=155 Identities=23% Similarity=0.212 Sum_probs=120.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.++|+++|.+|+|||-|+.+++...+.........++..++.+.+ +|+ +.+||||+|+ +.|+. +-.+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQ---------ERyrAitSaY 83 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQ---------ERYRAITSAY 83 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccch---------hhhccccchh
Confidence 468999999999999999999998888777777778888888887 555 5679999998 45554 4456
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~G 463 (536)
++.|-++++|+|++...+.+....|..-|....-.++++++|+||+||.... +...........++++||.++.|
T Consensus 84 YrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 84 YRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATN 163 (222)
T ss_pred hcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccccccc
Confidence 7889999999999988776666555555555445688999999999997621 22222334456799999999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
+++.++.+...+.
T Consensus 164 Ve~aF~~~l~~I~ 176 (222)
T KOG0087|consen 164 VEKAFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766554
No 182
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.63 E-value=6.4e-15 Score=145.56 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=99.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+|+++|.+|||||||++++++..+.. .+..+..+.....+.+ ++. .+.+|||+|. +.|.. ....+.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~-~y~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~---------e~~~~l~~~~~~ 71 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPG-SYVPTVFENYTASFEI-DKRRIELNMWDTSGS---------SYYDNVRPLAYP 71 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-ccCCccccceEEEEEE-CCEEEEEEEEeCCCc---------HHHHHHhHHhcc
Confidence 58999999999999999999866532 2221112222233444 444 5678999997 22222 223467
Q ss_pred hccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----------------HHHHHhccC-C
Q 009371 391 ESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----------------KVKLEAQKR-E 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----------------~~~~~~~~~-~ 451 (536)
.+|++++|+|++++.+.+.. ..|...+... ..+.|+|+|+||+|+..... ......... .
T Consensus 72 ~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 72 DSDAVLICFDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 89999999999998765554 3333333332 35789999999999965311 011111223 4
Q ss_pred CEEEEeccCCCC-HHHHHHHHHHHh
Q 009371 452 DVVCISALSGNG-LDEFCSAVQEKL 475 (536)
Q Consensus 452 ~~v~vSAktg~G-IdeL~~~I~~~l 475 (536)
+++++||+++.| ++++|.......
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 799999999985 999999877754
No 183
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.63 E-value=2.3e-15 Score=141.28 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=118.1
Q ss_pred CCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHh-H
Q 009371 310 VPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRAT-L 386 (536)
Q Consensus 310 ~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~t-l 386 (536)
..+.+|.++|.+|+|||||+|.+...++..........+..++.+.+ +++ .+++|||+|. +.|++. .
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQ---------ERFqsLg~ 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQ---------ERFQSLGV 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEEEecccH---------HHhhhccc
Confidence 34568999999999999999999988776555555556778888888 454 4569999998 556552 3
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHH-HHhhcC---CCCCCEEEEEEcCCCCCChhH-------HHH-HhccCCCEE
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDK-VLSELD---VSSIPKLMIWNKVDKVCDPQK-------VKL-EAQKREDVV 454 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~-vL~~l~---~~~~piIvVlNKiDl~~~~~~-------~~~-~~~~~~~~v 454 (536)
.-++.||++++|+|...+.+.+.++.|+. .|.... ....|.|+++||+|+.....+ ... ....+.|++
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyf 156 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYF 156 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeE
Confidence 34688999999999999877777776643 333332 245799999999998763211 111 123578999
Q ss_pred EEeccCCCCHHHHHHHHHHHhccc
Q 009371 455 CISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
++|||.+.|+++.|+.+.......
T Consensus 157 EtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 157 ETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred EecccccccHHHHHHHHHHHHHhc
Confidence 999999999999999988765443
No 184
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.62 E-value=5.3e-15 Score=140.43 Aligned_cols=151 Identities=24% Similarity=0.330 Sum_probs=108.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.+|+++|..|||||||++.|....... ...|.......+.+ ++..+.+||.+|.....+ .++ ..+..+
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~~~-----~w~---~y~~~~ 82 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKY-KGYSLTIWDLGGQESFRP-----LWK---SYFQNA 82 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEE-TTEEEEEEEESSSGGGGG-----GGG---GGHTTE
T ss_pred EEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeee-CcEEEEEEeccccccccc-----cce---eecccc
Confidence 469999999999999999998754321 33344555566666 788999999999732111 111 234679
Q ss_pred cceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHh-------ccCCCEEEEeccCCC
Q 009371 393 SLLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEA-------QKREDVVCISALSGN 462 (536)
Q Consensus 393 DliLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~-------~~~~~~v~vSAktg~ 462 (536)
|++++|+|+++... .+..+.+..++......++|+++++||+|+..... .+.... .....++.+||++|+
T Consensus 83 ~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 83 DGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp SEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred ceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 99999999998653 45556667777766667899999999999876422 121111 123458899999999
Q ss_pred CHHHHHHHHHHHh
Q 009371 463 GLDEFCSAVQEKL 475 (536)
Q Consensus 463 GIdeL~~~I~~~l 475 (536)
|+.+.++||.+.+
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999998753
No 185
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.61 E-value=8.4e-15 Score=164.08 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=106.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc---ccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV---LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~---~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.|+++|+.++|||||+++|+|.+. ..+.....|++.....+..+++..+.+|||||+ ......++..+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--------e~fi~~m~~g~~ 73 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--------EKFLSNMLAGVG 73 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--------HHHHHHHHHHhh
Confidence 589999999999999999998532 112223344443333333446778899999998 223355677788
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhH------HHHHh-c---cCCCEEEEecc
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQK------VKLEA-Q---KREDVVCISAL 459 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~------~~~~~-~---~~~~~v~vSAk 459 (536)
.+|++++|+|+..+...++.+.+. ++..+ ++| +|+|+||+|+.+.... ..... . ...++|++||+
T Consensus 74 ~~D~~lLVVda~eg~~~qT~ehl~-il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 74 GIDHALLVVACDDGVMAQTREHLA-ILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHH-HHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 999999999999877666665543 44444 356 5799999999764211 11111 1 13689999999
Q ss_pred CCCCHHHHHHHHHHHhcc
Q 009371 460 SGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~ 477 (536)
+|.|+++|+++|.+....
T Consensus 150 tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 150 EGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCHHHHHHHHHhhcc
Confidence 999999999999876654
No 186
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.61 E-value=7.3e-15 Score=140.31 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=96.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
+|+++|++|+|||||++++....+... ...+..+.....+.+ ++. .+.+|||+|...... +. ...+..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~------~~--~~~~~~ 72 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEE-YHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER------LR--PLSYSK 72 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcccceEEEEEEE-CCEEEEEEEEECCCChhccc------cc--hhhcCC
Confidence 599999999999999999985544221 111111222223333 333 467999999732110 11 113468
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--------------hHHHHH-hcc-CCCEE
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--------------QKVKLE-AQK-REDVV 454 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--------------~~~~~~-~~~-~~~~v 454 (536)
+|++++|+|+++..+..... .+...+... ..+.|+++|+||+|+.... +..... ... ..+++
T Consensus 73 a~~~llv~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 73 AHVILIGFAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 89999999998876554443 233333332 2469999999999985421 011111 112 24799
Q ss_pred EEeccCCCCHHHHHHHHHHHhcc
Q 009371 455 CISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
++||++|.|++++++++.+.+..
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999876643
No 187
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.61 E-value=1e-14 Score=162.27 Aligned_cols=149 Identities=27% Similarity=0.363 Sum_probs=96.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-----------------CCeeEEEeecccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-----------------NGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-----------------~g~~i~LiDTpG~i~~l 374 (536)
.|.|+++|++|+|||||+|+|++..+........|.......+... ....+.+|||||+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~---- 79 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH---- 79 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc----
Confidence 4789999999999999999999876543221112211101111110 0123889999997
Q ss_pred hhhHHHHHHH-hHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-------------
Q 009371 375 PTTLVAAFRA-TLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP------------- 440 (536)
Q Consensus 375 p~~l~e~f~~-tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~------------- 440 (536)
+.|.. ....+..+|++++|+|++++...++.+.+.. +.. .++|+++|+||+|+.+..
T Consensus 80 -----e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~-l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sa 150 (590)
T TIGR00491 80 -----EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI-LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFS 150 (590)
T ss_pred -----HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH-HHH---cCCCEEEEEECCCccchhhhccCchHHHHHH
Confidence 22332 2334578999999999998766555554432 232 368999999999997421
Q ss_pred ---hHH---------------HHH------------hccCCCEEEEeccCCCCHHHHHHHHHH
Q 009371 441 ---QKV---------------KLE------------AQKREDVVCISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 441 ---~~~---------------~~~------------~~~~~~~v~vSAktg~GIdeL~~~I~~ 473 (536)
... ... .....+++++||++|+|+++|+++|..
T Consensus 151 k~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 151 KQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 000 000 012358999999999999999998864
No 188
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1e-14 Score=132.26 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=115.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
+++.++|...+||||++.+.++..+...-.....++.....+...+ ..++.+|||+|+ +.++. |-.+++
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq---------EryrtiTTayyR 92 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ---------ERYRTITTAYYR 92 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccc---------hhhhHHHHHHhh
Confidence 4799999999999999999998876543333333444444443322 247789999998 22332 556789
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.|+++|+++|+++..+....+.+.-.++.....+.|+|+|+||||+.++.. ........+..+|++|||.+.|++
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk 172 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK 172 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence 999999999999876655555554455555667899999999999977532 122333456789999999999999
Q ss_pred HHHHHHHHHhcccc
Q 009371 466 EFCSAVQEKLKDSM 479 (536)
Q Consensus 466 eL~~~I~~~l~~~~ 479 (536)
++++++...+...+
T Consensus 173 ~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 173 QVFERLVDIICDKM 186 (193)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887654
No 189
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.60 E-value=2.6e-14 Score=159.66 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=102.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccc---------------ccccccCCeeEEEEEe--CC--eeEEEeeccccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAED---------------RLFATLDPTTRRVQMK--NG--GEFLLTDTVGFIQK 373 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~---------------~~~~Tld~ttr~i~l~--~g--~~i~LiDTpG~i~~ 373 (536)
..++|+|+.|+|||||+++|+...-.+.. ....|.....-.+.+. ++ ..+.+|||||+.+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d- 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD- 82 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-
Confidence 46999999999999999999754211111 0122232222233332 33 4688999999932
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-hHH-HHH-hccC
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-QKV-KLE-AQKR 450 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-~~~-~~~-~~~~ 450 (536)
+...+...+..+|++++|+|++++...+....+..++. .++|+++|+||+|+.... +.. ... ....
T Consensus 83 -------F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg 151 (595)
T TIGR01393 83 -------FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSADPERVKKEIEEVIG 151 (595)
T ss_pred -------HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccCHHHHHHHHHHHhC
Confidence 12233455788999999999998877666655554443 367999999999986432 111 111 1111
Q ss_pred ---CCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 451 ---EDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 451 ---~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
.+++++||++|.|+++|+++|.+.+...
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 2589999999999999999999887643
No 190
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.59 E-value=3.8e-14 Score=143.44 Aligned_cols=182 Identities=18% Similarity=0.248 Sum_probs=108.6
Q ss_pred EEEEccCCCChHHHHHhhhCCcccccc-------c-----------cccccCCeeEEEEEeCCeeEEEeecccccccchh
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAED-------R-----------LFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~-------~-----------~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~ 376 (536)
|+++|++|||||||+|+|++..-.... . ...++......+.+ ++..+++|||||+.
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~----- 75 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYA----- 75 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHH-----
Confidence 899999999999999999743211000 0 01122222233333 67889999999982
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEE
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCI 456 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~v 456 (536)
.....+...+..+|++++|+|++.+........+. .+. ..++|.++|+||+|+...
T Consensus 76 ---~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~---~~~~p~iivvNK~D~~~~----------------- 131 (268)
T cd04170 76 ---DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD---EAGIPRIIFINKMDRERA----------------- 131 (268)
T ss_pred ---HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEECCccCCC-----------------
Confidence 22234556678899999999999876554433333 233 346899999999997532
Q ss_pred eccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEccCceEEEEEcCHHHHHHHHHHHHhh
Q 009371 457 SALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTENGTLVKAHVPLRFARLLTPMRQMC 534 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~~g~~~~~~lp~~~~~~~~~~~~~l 534 (536)
.+++.++.|.+.+...... ..+|...+.-+..+.+......+.|.+++......+|..+...+.++|..+
T Consensus 132 ------~~~~~~~~l~~~~~~~~~~--~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l 201 (268)
T cd04170 132 ------DFDKTLAALQEAFGRPVVP--LQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREEL 201 (268)
T ss_pred ------CHHHHHHHHHHHhCCCeEE--EEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHH
Confidence 3455555555555443322 235555444333333333344445533222333467777777777777554
No 191
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=7.3e-14 Score=136.30 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=100.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE--e-CCeeEEEeecccccccchhhHHHHHHH-hHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM--K-NGGEFLLTDTVGFIQKLPTTLVAAFRA-TLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l--~-~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ 387 (536)
..+|+++|++|||||||++++....+.. ....|.........+ . +...+.+|||+|... +.. ...
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~---------~~~~~~~ 77 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEK--KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK---------FGGLRDG 77 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCeEEEEEEEECCCchh---------hhhhhHH
Confidence 3579999999999999997655433321 122333333333222 1 224678999999621 211 123
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh---hHHHHHhccCCCEEEEeccCCCCH
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP---QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~---~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+..++++++|+|.++..+......+...+... ..+.|+++|+||+|+.... ............++++||++|.|+
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 356789999999999876655544433333322 2468999999999986432 112222234467899999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++.+.+|.+.+...
T Consensus 157 ~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 157 EKPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998877654
No 192
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=1.4e-14 Score=133.10 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=112.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|.++|.+|+|||||+-++....+.........+|.....+.+ +|. ++.+|||+|+ +.|+. |-.++
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGq---------ErFRtLTpSyy 81 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQ---------ERFRTLTPSYY 81 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccch---------HhhhccCHhHh
Confidence 57999999999999999999876553222222345556666666 554 5679999998 56665 66788
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcC-CCCCCEEEEEEcCCCCCC-----hhHHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELD-VSSIPKLMIWNKVDKVCD-----PQKVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~-~~~~piIvVlNKiDl~~~-----~~~~~~~~~~~~~~v~vSAktg~G 463 (536)
+.|.++|+|+|++...+...++.|..-+.... -.++-.++|+||+|.... .+..........-++++||++.+|
T Consensus 82 RgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~ 161 (209)
T KOG0080|consen 82 RGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTREN 161 (209)
T ss_pred ccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhcc
Confidence 99999999999999877665554433333322 134556799999997643 233344445567789999999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
++..|+.+.+.+-..
T Consensus 162 V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 162 VQCCFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999888776543
No 193
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=4.1e-14 Score=150.89 Aligned_cols=166 Identities=27% Similarity=0.275 Sum_probs=114.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE--------------------eCC---eeEEEeeccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM--------------------KNG---GEFLLTDTVG 369 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l--------------------~~g---~~i~LiDTpG 369 (536)
.+|+|||.||||||||+|+|++..+.+.+++|+|++++.+.+.. .++ .++.++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 36999999999999999999999888889999999998876543 122 4578999999
Q ss_pred ccccchhhHHHHHHHhHHHHHhccceEEEEeCCCc-------------chHHHH--------------------------
Q 009371 370 FIQKLPTTLVAAFRATLEEISESSLLVHVVDISHP-------------LAEQQI-------------------------- 410 (536)
Q Consensus 370 ~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~-------------~~~~~~-------------------------- 410 (536)
++....... ..-...+..++.+|++++|+|++.. ....++
T Consensus 82 l~~ga~~g~-glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~ 160 (396)
T PRK09602 82 LVPGAHEGR-GLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKA 160 (396)
T ss_pred cCCCccchh-hHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 975432211 1123467788999999999999721 001100
Q ss_pred ----------------------HHHHHHHhhcC---------------------CCCCCEEEEEEcCCCCCChhHHHH-H
Q 009371 411 ----------------------EAVDKVLSELD---------------------VSSIPKLMIWNKVDKVCDPQKVKL-E 446 (536)
Q Consensus 411 ----------------------~~v~~vL~~l~---------------------~~~~piIvVlNKiDl~~~~~~~~~-~ 446 (536)
..+.++|++.+ ...+|+|+|+||+|+......... .
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~ 240 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLK 240 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHH
Confidence 00122222111 135899999999997643322221 1
Q ss_pred hccCCCEEEEeccCCCCHHH-HHHHHHHHhcccc
Q 009371 447 AQKREDVVCISALSGNGLDE-FCSAVQEKLKDSM 479 (536)
Q Consensus 447 ~~~~~~~v~vSAktg~GIde-L~~~I~~~l~~~~ 479 (536)
......++++||+.+.++++ +++.+.+.+....
T Consensus 241 ~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 241 EEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred hcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 11356799999999999999 8888888877654
No 194
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.58 E-value=3.5e-14 Score=144.02 Aligned_cols=185 Identities=18% Similarity=0.150 Sum_probs=114.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccc---------ccccccC-------------CeeEEEEEeCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAED---------RLFATLD-------------PTTRRVQMKNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~---------~~~~Tld-------------~ttr~i~l~~g~~i~LiDTpG~ 370 (536)
..|+|+|++|+|||||+++|+...-.+.. ...++.| .....+. +++..+.+|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCCc
Confidence 35999999999999999999743111000 0011111 1112233 36789999999998
Q ss_pred cccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccC
Q 009371 371 IQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKR 450 (536)
Q Consensus 371 i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~ 450 (536)
.+ +...+...+..+|++++|+|++.+....... +.+.+. ..++|+++++||+|+..
T Consensus 82 ~d--------f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~-i~~~~~---~~~~P~iivvNK~D~~~------------ 137 (267)
T cd04169 82 ED--------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRK-LFEVCR---LRGIPIITFINKLDREG------------ 137 (267)
T ss_pred hH--------HHHHHHHHHHHCCEEEEEEECCCCccHHHHH-HHHHHH---hcCCCEEEEEECCccCC------------
Confidence 22 1223555678899999999998875433322 223333 34789999999999642
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEcc-Cce--EEEEEcCHHHHHHH
Q 009371 451 EDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTE-NGT--LVKAHVPLRFARLL 527 (536)
Q Consensus 451 ~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~-~g~--~~~~~lp~~~~~~~ 527 (536)
.....+++.|.+.+...... ..+|...+..+..+.+....+.+.|.+ .|. .....+|.++.+.+
T Consensus 138 -----------a~~~~~~~~l~~~l~~~~~~--~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~ 204 (267)
T cd04169 138 -----------RDPLELLDEIEEELGIDCTP--LTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKL 204 (267)
T ss_pred -----------CCHHHHHHHHHHHHCCCcee--EEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHH
Confidence 23456677777777665544 346766665555455555556667733 232 33345687777777
Q ss_pred HHHHHhhh
Q 009371 528 TPMRQMCI 535 (536)
Q Consensus 528 ~~~~~~l~ 535 (536)
.++++.|+
T Consensus 205 ~e~~~~l~ 212 (267)
T cd04169 205 DELGGDLA 212 (267)
T ss_pred HhcCHHHH
Confidence 77776654
No 195
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.57 E-value=2.8e-14 Score=131.00 Aligned_cols=136 Identities=18% Similarity=0.306 Sum_probs=93.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.+|.+||++|||||||+++|.+.... -..|..+.+.+ .++||||-+-..|. .++..+....+|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~---------~~KTq~i~~~~----~~IDTPGEyiE~~~----~y~aLi~ta~da 64 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR---------YKKTQAIEYYD----NTIDTPGEYIENPR----FYHALIVTAQDA 64 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC---------cCccceeEecc----cEEECChhheeCHH----HHHHHHHHHhhC
Confidence 36999999999999999999986432 12334455533 25999997544332 234455566789
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHH-----HhccCCCEEEEeccCCCCHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKL-----EAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~-----~~~~~~~~v~vSAktg~GIdeL 467 (536)
|+|++|.|++.+.....-. . ....++|+|-|+||+|+......... .......+|++|+.+|+|+++|
T Consensus 65 d~V~ll~dat~~~~~~pP~----f---a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPG----F---ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEEL 137 (143)
T ss_pred CEEEEEecCCCCCccCCch----h---hcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHH
Confidence 9999999998864321111 1 12346899999999999943322211 1123346799999999999999
Q ss_pred HHHHH
Q 009371 468 CSAVQ 472 (536)
Q Consensus 468 ~~~I~ 472 (536)
.++|.
T Consensus 138 ~~~L~ 142 (143)
T PF10662_consen 138 KDYLE 142 (143)
T ss_pred HHHHh
Confidence 99985
No 196
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.3e-14 Score=129.22 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=112.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
+++|++||..|+|||.|+++++..-++...-....++.....+.+ +| .++.+|||+|. +.|++ +..+
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagq---------erfrsitqsy 76 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQ---------ERFRSITQSY 76 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccch---------HHHHHHHHHH
Confidence 468999999999999999999977666554444455666666666 44 36789999998 66766 6778
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---H--HhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---L--EAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~--~~~~~~~~v~vSAktg~G 463 (536)
++.|+.+++|+|++...+..-+..|..-+++.....+-.|+|+||+|+.+..+.-. + ....+.-++++||+..+|
T Consensus 77 yrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~n 156 (213)
T KOG0095|consen 77 YRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADN 156 (213)
T ss_pred hhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhh
Confidence 89999999999999876655544444444444444556689999999987643211 1 111233478899999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
++.|+..+.-.+-
T Consensus 157 ve~lf~~~a~rli 169 (213)
T KOG0095|consen 157 VEKLFLDLACRLI 169 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876554
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=1.5e-13 Score=153.84 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=102.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccc-----c----------cccccccCCeeEEEEEe--C--CeeEEEeecccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLA-----E----------DRLFATLDPTTRRVQMK--N--GGEFLLTDTVGFIQ 372 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~-----~----------~~~~~Tld~ttr~i~l~--~--g~~i~LiDTpG~i~ 372 (536)
+..++|+|+.++|||||+.+|+...-.+ . .....|+...+-.+.+. + +..+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3469999999999999999997531110 0 01122333333333332 2 35788999999832
Q ss_pred cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-hHH-HHH-hcc
Q 009371 373 KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-QKV-KLE-AQK 449 (536)
Q Consensus 373 ~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-~~~-~~~-~~~ 449 (536)
+.......+..+|++++|+|++++...++...+..+.. .++|+++|+||+|+.... ... ... ...
T Consensus 87 --------F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~l 154 (600)
T PRK05433 87 --------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVI 154 (600)
T ss_pred --------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHh
Confidence 11223345678999999999998876666555544332 368999999999986532 111 111 111
Q ss_pred C---CCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 450 R---EDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 450 ~---~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
. .+++++||++|.|+++|+++|.+.+..
T Consensus 155 g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 155 GIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1 248999999999999999999988764
No 198
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.55 E-value=1.2e-13 Score=154.23 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=103.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCc--ccc----cc----------ccccccCCeeEEEEEeCCeeEEEeecccccccchhh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT--VLA----ED----------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT 377 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~--~~~----~~----------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~ 377 (536)
.|+|+|+.++|||||+++|+... +.. .+ ....|+......+.+ ++..+.+|||||+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~------ 75 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHA------ 75 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHH------
Confidence 59999999999999999997421 100 00 112233333334444 78899999999982
Q ss_pred HHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHH----H-----
Q 009371 378 LVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKL----E----- 446 (536)
Q Consensus 378 l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~----~----- 446 (536)
++.......+..+|++++|+|++.+...+....+..+. . .++|.|+|+||+|+..... .... .
T Consensus 76 --DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~-~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 76 --DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKAL-E---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGA 149 (594)
T ss_pred --HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHH-H---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcc
Confidence 22233455678899999999998876555544444333 2 3689999999999865321 1111 1
Q ss_pred --hccCCCEEEEeccCCC----------CHHHHHHHHHHHhccc
Q 009371 447 --AQKREDVVCISALSGN----------GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 447 --~~~~~~~v~vSAktg~----------GIdeL~~~I~~~l~~~ 478 (536)
.....|++++||++|. |++.|++.|.+.+...
T Consensus 150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 1123589999999996 8999999999988643
No 199
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.54 E-value=1.8e-13 Score=135.42 Aligned_cols=148 Identities=22% Similarity=0.208 Sum_probs=94.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccc--------------cccc-------cCCee----------------EEEEE
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDR--------------LFAT-------LDPTT----------------RRVQM 356 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~--------------~~~T-------ld~tt----------------r~i~l 356 (536)
+|+++|+.++|||||+++|+...+..... .+.| +.... ..+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 38899999999999999998542211000 0000 00000 01111
Q ss_pred eCCeeEEEeecccccccchhhHHHHHHHhHHHHH--hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcC
Q 009371 357 KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS--ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKV 434 (536)
Q Consensus 357 ~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~--~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKi 434 (536)
.++..+.++||||+. ...+.+...+. .+|++++|+|+..+....+.+.+. ++.. .++|+++|+||+
T Consensus 81 ~~~~~i~liDtpG~~--------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~-~l~~---~~ip~ivvvNK~ 148 (224)
T cd04165 81 KSSKLVTFIDLAGHE--------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLG-LALA---LNIPVFVVVTKI 148 (224)
T ss_pred eCCcEEEEEECCCcH--------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHH-HHHH---cCCCEEEEEECc
Confidence 246788999999982 22233444443 689999999998887666655444 3333 368999999999
Q ss_pred CCCCChhHH---H---HHhc---------------------------cCCCEEEEeccCCCCHHHHHHHHHH
Q 009371 435 DKVCDPQKV---K---LEAQ---------------------------KREDVVCISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 435 Dl~~~~~~~---~---~~~~---------------------------~~~~~v~vSAktg~GIdeL~~~I~~ 473 (536)
|+.+..... . .... ...|+|++||.+|+|+++|.+.|..
T Consensus 149 D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 149 DLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 987643211 1 1111 1248999999999999999988753
No 200
>PRK12736 elongation factor Tu; Reviewed
Probab=99.54 E-value=1.2e-13 Score=147.62 Aligned_cols=151 Identities=21% Similarity=0.218 Sum_probs=100.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccc----------------ccccccccCCeeEEEEE-eCCeeEEEeecccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLA----------------EDRLFATLDPTTRRVQM-KNGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~----------------~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~~l 374 (536)
...|+++|+.++|||||+++|++..... +.....|.+.. ...+ .++..+.++||||+
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh---- 85 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGH---- 85 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCH----
Confidence 3469999999999999999998631100 00112222221 2222 24568899999997
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhHHHHHh------
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQKVKLEA------ 447 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~~~~~~------ 447 (536)
.++...++..+..+|++++|+|+..+...++.+.+.. +..+ ++| +|+|+||+|+.+..+......
T Consensus 86 ----~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~-~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 86 ----ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL-ARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred ----HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH-HHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 2344556667788999999999988766665554443 3333 578 678999999975432221100
Q ss_pred ----c---cCCCEEEEeccCCC--------CHHHHHHHHHHHhc
Q 009371 448 ----Q---KREDVVCISALSGN--------GLDEFCSAVQEKLK 476 (536)
Q Consensus 448 ----~---~~~~~v~vSAktg~--------GIdeL~~~I~~~l~ 476 (536)
. ...+++++||++|. +++.|++.|.+.+.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 1 12589999999983 68899999988775
No 201
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=6.7e-14 Score=150.34 Aligned_cols=151 Identities=27% Similarity=0.323 Sum_probs=113.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe--CCeeEEEeecccccccchhhHHHHHHHhH-HH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK--NGGEFLLTDTVGFIQKLPTTLVAAFRATL-EE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~--~g~~i~LiDTpG~i~~lp~~l~e~f~~tl-~e 388 (536)
.|.|+++|+...|||||+..+-+.++........|.......+.+. +...++|+||||+ ++|..+. ..
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH---------eAFt~mRaRG 75 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH---------EAFTAMRARG 75 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH---------HHHHHHHhcC
Confidence 5789999999999999999999888776555555555444555554 3478999999998 6665543 23
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-HHHH----------hccCCCEEEEe
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-VKLE----------AQKREDVVCIS 457 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-~~~~----------~~~~~~~v~vS 457 (536)
...+|++++|+|+.++..++..+.+... ...+.|+++++||+|+.+.... .... ......++++|
T Consensus 76 a~vtDIaILVVa~dDGv~pQTiEAI~ha----k~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvS 151 (509)
T COG0532 76 ASVTDIAILVVAADDGVMPQTIEAINHA----KAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVS 151 (509)
T ss_pred CccccEEEEEEEccCCcchhHHHHHHHH----HHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEee
Confidence 4668999999999999998887765543 3348899999999999865332 1111 11224689999
Q ss_pred ccCCCCHHHHHHHHHHHh
Q 009371 458 ALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 458 Aktg~GIdeL~~~I~~~l 475 (536)
|++|+|+++|++.|.-..
T Consensus 152 A~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 152 AKTGEGIDELLELILLLA 169 (509)
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 999999999999886543
No 202
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.54 E-value=5.1e-14 Score=138.47 Aligned_cols=139 Identities=23% Similarity=0.206 Sum_probs=87.0
Q ss_pred EEEEccCCCChHHHHHhhhCCcccc-------------------------------ccccccccCCeeEEEEEeCCeeEE
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLA-------------------------------EDRLFATLDPTTRRVQMKNGGEFL 363 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~-------------------------------~~~~~~Tld~ttr~i~l~~g~~i~ 363 (536)
|+++|+.|+|||||+.+|+...-.+ +.....|.+.....+.+ ++..+.
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i~ 80 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRFT 80 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEEE
Confidence 8999999999999999995321000 00112233333344444 778999
Q ss_pred EeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-------hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCC
Q 009371 364 LTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-------AEQQIEAVDKVLSELDVSSIPKLMIWNKVDK 436 (536)
Q Consensus 364 LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-------~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl 436 (536)
++||||+. .....+...+..+|++++|+|++++. ..+....+ ..+..++ ..|+++|+||+|+
T Consensus 81 liDtpG~~--------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHR--------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTLG--VKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChH--------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHcC--CCeEEEEEEcccc
Confidence 99999972 22344556677899999999998742 22222222 2233332 3688999999999
Q ss_pred CCC---hh---HHHH-----Hhc-----cCCCEEEEeccCCCCHH
Q 009371 437 VCD---PQ---KVKL-----EAQ-----KREDVVCISALSGNGLD 465 (536)
Q Consensus 437 ~~~---~~---~~~~-----~~~-----~~~~~v~vSAktg~GId 465 (536)
... .. .... ... ...+++++||++|.|++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 732 11 1110 111 13579999999999987
No 203
>CHL00071 tufA elongation factor Tu
Probab=99.54 E-value=1.1e-13 Score=148.43 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=99.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccc----------------cccccccCCeeEEEEEeCCeeEEEeecccccccch
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAE----------------DRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~----------------~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp 375 (536)
...|+++|++|+|||||+++|++...... .....|.+.....+. .++..+.++||||+
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh----- 85 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGH----- 85 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCCh-----
Confidence 34699999999999999999986421110 011222222222222 25678899999997
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhHHHH-------Hh
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQKVKL-------EA 447 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~~~~-------~~ 447 (536)
...+..+...+..+|++++|+|+..+...++.+.+. .+..+ ++| +|+|+||+|+.+..+.... ..
T Consensus 86 ---~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~-~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 86 ---ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL-LAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred ---HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH-HHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 234555667788999999999999877666555443 33333 578 6789999999864332111 10
Q ss_pred -c-----cCCCEEEEeccCCCC------------------HHHHHHHHHHHh
Q 009371 448 -Q-----KREDVVCISALSGNG------------------LDEFCSAVQEKL 475 (536)
Q Consensus 448 -~-----~~~~~v~vSAktg~G------------------IdeL~~~I~~~l 475 (536)
. ...+++++||.+|.+ +..|+++|...+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 0 126899999999863 567777777655
No 204
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.2e-13 Score=125.97 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=109.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
+++.++|+.|+|||.|+..+....+.........++...+-+.. +|+ ++.+|||+|+ +.|++ +..++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQ---------ErFRSVtRsYY 79 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQ---------ERFRSVTRSYY 79 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccH---------HHHHHHHHHHh
Confidence 57899999999999999999877664322223334555555555 443 6779999998 66776 66778
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHh-----ccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEA-----QKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~-----~~~~~~v~vSAktg~GI 464 (536)
+.|...++|+|+++..+...+..|..-...+...++-+|+++||.|+..+.+..-+.+ ....-+.++||++|+|+
T Consensus 80 RGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 80 RGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV 159 (214)
T ss_pred ccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccH
Confidence 8999999999999876665554444444445556778889999999987654322221 22345789999999999
Q ss_pred HHHHHHHHHHh
Q 009371 465 DEFCSAVQEKL 475 (536)
Q Consensus 465 deL~~~I~~~l 475 (536)
++.|-.....+
T Consensus 160 EEaFl~c~~tI 170 (214)
T KOG0086|consen 160 EEAFLKCARTI 170 (214)
T ss_pred HHHHHHHHHHH
Confidence 99776655544
No 205
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=125.60 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=113.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC-eeEEEeecccccccchhhHHHHHHHhH-HHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG-GEFLLTDTVGFIQKLPTTLVAAFRATL-EEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g-~~i~LiDTpG~i~~lp~~l~e~f~~tl-~ei~ 390 (536)
+...|+|.+|+|||||+-++....+..+.......|...+.+.+++. .++.||||+|. +.|+... .++.
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq---------ErFrtitstyyr 79 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ---------ERFRTITSTYYR 79 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH---------HHHHHHHHHHcc
Confidence 45689999999999999999876554333333446677788877422 36789999997 6676644 3457
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhc--CCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSEL--DVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l--~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+++++|+|.++..+.. .+.+||.++ +....|-++|+||+|..... +........+..+|++|||...|
T Consensus 80 gthgv~vVYDVTn~ESF~---Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~N 156 (198)
T KOG0079|consen 80 GTHGVIVVYDVTNGESFN---NVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENEN 156 (198)
T ss_pred CCceEEEEEECcchhhhH---hHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhccc
Confidence 789999999999875544 445566655 34578999999999987643 22233344567899999999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
++..|..|.+.+...
T Consensus 157 vE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 157 VEAMFHCITKQVLQA 171 (198)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999998877654
No 206
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.53 E-value=2.3e-13 Score=131.22 Aligned_cols=162 Identities=18% Similarity=0.195 Sum_probs=104.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccc--cccccCCeeEEEEEeCCeeEEEeecccccccch--hhHHHHHHHh-HHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDR--LFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP--TTLVAAFRAT-LEE 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~--~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp--~~l~e~f~~t-l~e 388 (536)
+|+++|.+|||||||+|+|+|........ ...|.........+ +|..+.++||||+.+... ......+... ...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 58999999999999999999987653332 23344444444444 788999999999975421 1122222222 222
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCC-CCCEEEEEEcCCCCCChh----------HHHHHhcc-CCCEEEE
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVS-SIPKLMIWNKVDKVCDPQ----------KVKLEAQK-REDVVCI 456 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~-~~piIvVlNKiDl~~~~~----------~~~~~~~~-~~~~v~v 456 (536)
...+|++++|+|+.+ .+..+...+..+.+.++.. -.++++|+|++|...... .+...... ...++..
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f 159 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAF 159 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEE
Confidence 356799999999987 6666666665555544421 257899999999876421 11111111 1223333
Q ss_pred -----eccCCCCHHHHHHHHHHHhcc
Q 009371 457 -----SALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 457 -----SAktg~GIdeL~~~I~~~l~~ 477 (536)
|+..+.++++|++.|.+.+..
T Consensus 160 ~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 160 NNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred eCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 356678999999999998886
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.53 E-value=5.2e-14 Score=151.63 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=91.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc-------------------------------cccccccCCeeEEEEEeCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE-------------------------------DRLFATLDPTTRRVQMKNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~-------------------------------~~~~~Tld~ttr~i~l~~g~~ 361 (536)
..|+++|++|+|||||+++|+...-.+. .....|.+.....+.. ++..
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~~~ 85 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DKYY 85 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CCeE
Confidence 4699999999999999999984321110 0233444444444444 6778
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCC--cchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISH--PLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~--~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
+.+|||||+.+ ....+...+..+|++++|+|+++ ....+..+.+ .++..++ ..|+++|+||+|+...
T Consensus 86 i~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~-~~~~~~~--~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 86 FTIVDCPGHRD--------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHV-FLARTLG--INQLIVAINKMDAVNY 154 (425)
T ss_pred EEEEECCCccc--------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH-HHHHHcC--CCeEEEEEEccccccc
Confidence 99999999722 22334445678999999999987 4433333322 2333333 2368999999999753
Q ss_pred hh-HH-------HHHh-c-c----CCCEEEEeccCCCCHHH
Q 009371 440 PQ-KV-------KLEA-Q-K----REDVVCISALSGNGLDE 466 (536)
Q Consensus 440 ~~-~~-------~~~~-~-~----~~~~v~vSAktg~GIde 466 (536)
.. .+ .... . . ..+++++||++|.|+++
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 21 11 1111 1 1 25799999999999987
No 208
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1e-13 Score=148.13 Aligned_cols=151 Identities=30% Similarity=0.362 Sum_probs=116.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHH-HHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLE-EIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~-ei~ 390 (536)
.|+|.|+|+...|||||+.+|-+..+.....-+.|.....-.+.+++|..++|.||||+ .+|.++.. ...
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH---------aAF~aMRaRGA~ 223 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH---------AAFSAMRARGAN 223 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcH---------HHHHHHHhccCc
Confidence 57899999999999999999998887766555555555555667789999999999998 66766543 345
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HHHH----------HhccCCCEEEEecc
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKL----------EAQKREDVVCISAL 459 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~----------~~~~~~~~v~vSAk 459 (536)
.+|++++|+-+.++..++..+.+... ...+.|+|+.+||||...... .... ....+.+++++||+
T Consensus 224 vtDIvVLVVAadDGVmpQT~EaIkhA----k~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMPQTLEAIKHA----KSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred cccEEEEEEEccCCccHhHHHHHHHH----HhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 67999999999999988887766544 335899999999999876432 1111 11234579999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 009371 460 SGNGLDEFCSAVQEKL 475 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l 475 (536)
+|+|++.|.+++.-..
T Consensus 300 ~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 300 TGENLDLLEEAILLLA 315 (683)
T ss_pred cCCChHHHHHHHHHHH
Confidence 9999999999876543
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.53 E-value=1.2e-13 Score=148.14 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=98.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc---ccccccccCCe-------------------eEEE-EE-----eCCeeEEE
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA---EDRLFATLDPT-------------------TRRV-QM-----KNGGEFLL 364 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~---~~~~~~Tld~t-------------------tr~i-~l-----~~g~~i~L 364 (536)
..|+++|+.|+|||||+++|++..... +.....|++.. +... .. ..+..+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 469999999999999999998742210 00001111110 0000 00 01457899
Q ss_pred eecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-
Q 009371 365 TDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK- 442 (536)
Q Consensus 365 iDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~- 442 (536)
+||||+ ......+...+..+|++++|+|++++. ..+..+.+. .+..++ ..|+++|+||+|+.+....
T Consensus 85 iDtPGh--------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~g--i~~iIVvvNK~Dl~~~~~~~ 153 (406)
T TIGR03680 85 VDAPGH--------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEIIG--IKNIVIVQNKIDLVSKEKAL 153 (406)
T ss_pred EECCCH--------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHcC--CCeEEEEEEccccCCHHHHH
Confidence 999998 223344566677899999999999765 333333333 344443 2468999999999864321
Q ss_pred --HHH---Hhc----cCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 443 --VKL---EAQ----KREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 443 --~~~---~~~----~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
... ... ...+++++||++|.|+++|+++|...+.
T Consensus 154 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 154 ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 111 111 1457999999999999999999998765
No 210
>PTZ00258 GTP-binding protein; Provisional
Probab=99.53 E-value=1.8e-13 Score=144.97 Aligned_cols=89 Identities=31% Similarity=0.389 Sum_probs=72.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC----------------eeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG----------------GEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g----------------~~i~LiDTpG~i~~lp~ 376 (536)
..|+|||.||||||||+|+|++..+.+.+++|+|.++..+.+.+++. .++.++||||++.....
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~ 101 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASE 101 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcc
Confidence 47999999999999999999999988999999999999988877532 25899999999754332
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCC
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDIS 402 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s 402 (536)
.. ..-...+..+..+|+++||+|+.
T Consensus 102 g~-gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 102 GE-GLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred hh-HHHHHHHHHHHHCCEEEEEEeCC
Confidence 21 11234667789999999999984
No 211
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.52 E-value=8e-13 Score=122.17 Aligned_cols=152 Identities=22% Similarity=0.284 Sum_probs=111.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
+|.++|..||||||++++|.+... +..-.|.....+++.+ .+..+.+||..|.. .+..+++ .++...|
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----~lr~~W~---nYfestd 85 (185)
T KOG0073|consen 18 RILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----TLRSYWK---NYFESTD 85 (185)
T ss_pred EEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEe-cceEEEEEEcCCcc-----hhHHHHH---HhhhccC
Confidence 599999999999999999998753 2222344444556665 78899999999982 2223333 3456789
Q ss_pred ceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHH------HHH-hccCCCEEEEeccCCCC
Q 009371 394 LLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKV------KLE-AQKREDVVCISALSGNG 463 (536)
Q Consensus 394 liLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~------~~~-~~~~~~~v~vSAktg~G 463 (536)
++|+|+|++++.. .+....+...|.+-...+.|++++.||.|+...- +.+ ... .....+++-+||.+|+|
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 9999999988754 4445566677776667789999999999998432 111 111 23456899999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009371 464 LDEFCSAVQEKLKD 477 (536)
Q Consensus 464 IdeL~~~I~~~l~~ 477 (536)
+.+-++|+...+..
T Consensus 166 l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887765
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.51 E-value=2.1e-13 Score=152.19 Aligned_cols=149 Identities=26% Similarity=0.396 Sum_probs=94.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccccccccc--ccCCeeEEEEEe---CC------------eeEEEeecccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFA--TLDPTTRRVQMK---NG------------GEFLLTDTVGFIQKL 374 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~--Tld~ttr~i~l~---~g------------~~i~LiDTpG~i~~l 374 (536)
.|.|+++|++|+|||||+|+|.+..+........ ++..+....... .+ ..+.+|||||+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~---- 81 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH---- 81 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh----
Confidence 4789999999999999999998765432111111 111111000000 00 12789999998
Q ss_pred hhhHHHHHHH-hHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh------------
Q 009371 375 PTTLVAAFRA-TLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ------------ 441 (536)
Q Consensus 375 p~~l~e~f~~-tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~------------ 441 (536)
+.|.. ....+..+|++++|+|++++...+..+.+. .+.. .++|+++|+||+|+.....
T Consensus 82 -----e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 82 -----EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred -----HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 22332 223457799999999999866555555443 2332 4789999999999863110
Q ss_pred --------HH--------HHHh---------------ccCCCEEEEeccCCCCHHHHHHHHHH
Q 009371 442 --------KV--------KLEA---------------QKREDVVCISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 442 --------~~--------~~~~---------------~~~~~~v~vSAktg~GIdeL~~~I~~ 473 (536)
.+ .... ....+++++||++|+|+++|++.+..
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0000 12357899999999999999988764
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.51 E-value=4.2e-13 Score=133.89 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=73.0
Q ss_pred EEEEccCCCChHHHHHhhhCCccccc-----ccc-------------ccccCCeeEEEEEeCCeeEEEeecccccccchh
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAE-----DRL-------------FATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~-----~~~-------------~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~ 376 (536)
|+++|++|+|||||+++|+...-.+. +.. ..++......+. +++.++.+|||||+.+
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~---- 76 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMD---- 76 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccc----
Confidence 89999999999999999975311100 000 011111222233 3678999999999832
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
....+...+..+|++++|+|++++....... +...+.. .++|+++|+||+|+..
T Consensus 77 ----f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~-~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 77 ----FIAEVERSLSVLDGAILVISAVEGVQAQTRI-LWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred ----hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECccccC
Confidence 2233445678899999999999876544333 3333433 3689999999999864
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.50 E-value=2.9e-13 Score=145.35 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=99.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc---cccccccccCCeeEEEEE------------------e--C-----CeeEE
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATLDPTTRRVQM------------------K--N-----GGEFL 363 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tld~ttr~i~l------------------~--~-----g~~i~ 363 (536)
...|+++|+.++|||||+.+|++.... .+.....|++.......+ . + ...+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 347999999999999999999774111 011112222221111000 0 0 25789
Q ss_pred EeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH
Q 009371 364 LTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK 442 (536)
Q Consensus 364 LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~ 442 (536)
+|||||+ ......++..+..+|++++|+|++++. ..+..+.+. .+..++ ..|+++|+||+|+.+....
T Consensus 89 liDtPG~--------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-~l~~~~--i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 89 FVDAPGH--------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-ALDIIG--IKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEECCCH--------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-HHHHcC--CCcEEEEEEeeccccchhH
Confidence 9999997 223345666677889999999999765 344444332 344433 2468999999999864321
Q ss_pred H------HHHhc----cCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 443 V------KLEAQ----KREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 443 ~------~~~~~----~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
. ..... ...+++++||++|.|+++|+++|.+.+..
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 1 11111 23679999999999999999999987654
No 215
>PRK12735 elongation factor Tu; Reviewed
Probab=99.50 E-value=2.5e-13 Score=145.19 Aligned_cols=151 Identities=18% Similarity=0.183 Sum_probs=97.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc----------------ccccccccCCeeEEEEEeCCeeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA----------------EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~----------------~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~ 376 (536)
..|+++|++|+|||||+++|++..... +.....|.+.....+. .++..+.++||||+
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh------ 85 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGH------ 85 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCH------
Confidence 469999999999999999998621000 0011122222111122 25668899999998
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEE-EEEEcCCCCCChhHHH-------HHh-
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKL-MIWNKVDKVCDPQKVK-------LEA- 447 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piI-vVlNKiDl~~~~~~~~-------~~~- 447 (536)
..+...+...+..+|++++|+|+..+...+..+.+. .+.. .++|.+ +|+||+|+.+..+... ...
T Consensus 86 --~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~-~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 86 --ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred --HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHH-HHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 233455666778899999999998866555444433 2333 357866 5799999975422111 111
Q ss_pred c-----cCCCEEEEeccCCC----------CHHHHHHHHHHHhc
Q 009371 448 Q-----KREDVVCISALSGN----------GLDEFCSAVQEKLK 476 (536)
Q Consensus 448 ~-----~~~~~v~vSAktg~----------GIdeL~~~I~~~l~ 476 (536)
. ...+++++||++|. |+..|+++|...+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1 13679999999984 78899999988764
No 216
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.50 E-value=2.6e-13 Score=125.22 Aligned_cols=157 Identities=22% Similarity=0.203 Sum_probs=114.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
+++.++|.+-+|||+|+..++...++.-..+...+|...+-+.+..|. ++.+|||+|+ +.|++ |..++
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq---------erfrsitksyy 79 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ---------ERFRSITKSYY 79 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch---------HHHHHHHHHHh
Confidence 357899999999999999999877664444545555556666665565 5679999998 66766 67788
Q ss_pred HhccceEEEEeCCCcchHHHHHHHH-HHHhhcCCCCCC-EEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVD-KVLSELDVSSIP-KLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~-~vL~~l~~~~~p-iIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~ 462 (536)
+++-++++|+|.++..+.++.+.|. +.-..++..+++ .++|+.|+|+..... .....+.....+|++||++|.
T Consensus 80 rnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 80 RNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGC 159 (213)
T ss_pred hcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCC
Confidence 9999999999999987666554432 222223323444 468999999987543 223334456689999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 009371 463 GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~ 478 (536)
|+++.++.|.+.+...
T Consensus 160 NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 160 NVEEAFDMLAQEIFQA 175 (213)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999888766543
No 217
>PRK00049 elongation factor Tu; Reviewed
Probab=99.49 E-value=4e-13 Score=143.64 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=99.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc----------------ccccccccCCeeEEEEEeCCeeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA----------------EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~----------------~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~ 376 (536)
..|+++|+.++|||||+++|++..... +.....|.+.....+. .++..+.++||||+.
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~----- 86 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHA----- 86 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHH-----
Confidence 469999999999999999998631100 0012223333222222 256789999999982
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEE-EEEEcCCCCCChhHHHH-------Hh-
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKL-MIWNKVDKVCDPQKVKL-------EA- 447 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piI-vVlNKiDl~~~~~~~~~-------~~- 447 (536)
.....+...+..+|++++|+|+..+...++.+.+. .+..+ ++|.+ +++||+|+....+.... ..
T Consensus 87 ---~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~-~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 87 ---DYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred ---HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHH-HHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 33455566678899999999998876665555443 33333 57876 58999999753321111 11
Q ss_pred -----ccCCCEEEEeccCCC----------CHHHHHHHHHHHhc
Q 009371 448 -----QKREDVVCISALSGN----------GLDEFCSAVQEKLK 476 (536)
Q Consensus 448 -----~~~~~~v~vSAktg~----------GIdeL~~~I~~~l~ 476 (536)
....+++++||++|. |+..|+++|...+.
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 123689999999975 67889999887654
No 218
>PRK10218 GTP-binding protein; Provisional
Probab=99.49 E-value=5.1e-13 Score=149.22 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=101.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCc-ccccc---------------ccccccCCeeEEEEEeCCeeEEEeecccccccch
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGAT-VLAED---------------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~-~~~~~---------------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp 375 (536)
+..|+|+|+.++|||||+++|+... ..... ....|+......+. +++..+.+|||||+.+.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df-- 81 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADF-- 81 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchh--
Confidence 4579999999999999999998631 11000 01111111122223 36788999999998321
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--H---H-HHH---
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--K---V-KLE--- 446 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~---~-~~~--- 446 (536)
...+...+..+|++++|+|++.+...+....+..++. .++|.|+|+||+|+..... . . ...
T Consensus 82 ------~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l 151 (607)
T PRK10218 82 ------GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL 151 (607)
T ss_pred ------HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc
Confidence 1233445788999999999988765554444443332 3689999999999865321 1 1 111
Q ss_pred ----hccCCCEEEEeccCCC----------CHHHHHHHHHHHhccc
Q 009371 447 ----AQKREDVVCISALSGN----------GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 447 ----~~~~~~~v~vSAktg~----------GIdeL~~~I~~~l~~~ 478 (536)
.....|++++||++|. |+..|++.|.+.+...
T Consensus 152 ~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 152 DATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 0124689999999998 6899999999888654
No 219
>PLN03127 Elongation factor Tu; Provisional
Probab=99.49 E-value=5.7e-13 Score=144.38 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=98.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc----------------cccccccccCCeeEEEEEeCCeeEEEeecccccccch
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL----------------AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~----------------~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp 375 (536)
...|+++|+.++|||||+++|++.... .+.....|.+.....+.. ++.++.++||||+.
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~---- 135 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHA---- 135 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCcc----
Confidence 456999999999999999999743100 011123344433333322 56689999999983
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCE-EEEEEcCCCCCChhHHHHH-------h
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPK-LMIWNKVDKVCDPQKVKLE-------A 447 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~pi-IvVlNKiDl~~~~~~~~~~-------~ 447 (536)
..+..+...+..+|++++|+|+..+...++.+.+. .+..+ ++|. |+|+||+|+.+..+..... .
T Consensus 136 ----~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~-~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 136 ----DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL-LARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred ----chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH-HHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 23444555667899999999998876666555443 33333 5784 7899999998643211110 0
Q ss_pred ------ccCCCEEEEecc---CCCC-------HHHHHHHHHHHhc
Q 009371 448 ------QKREDVVCISAL---SGNG-------LDEFCSAVQEKLK 476 (536)
Q Consensus 448 ------~~~~~~v~vSAk---tg~G-------IdeL~~~I~~~l~ 476 (536)
....|++++||. +|.| +..|+++|.+.+.
T Consensus 208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 013578888876 5555 7889999888764
No 220
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.49 E-value=5e-13 Score=121.39 Aligned_cols=151 Identities=27% Similarity=0.319 Sum_probs=113.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHH-HHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEE-ISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~e-i~~a 392 (536)
.+.++|-.|+|||||+|.+...... .....|.....+.+.- +...+.+||.+|. ..|++..+. .+.+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~~~--edmiptvGfnmrk~tk-gnvtiklwD~gGq---------~rfrsmWerycR~v 89 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQYL--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQ---------PRFRSMWERYCRGV 89 (186)
T ss_pred eEEEEeeccCCcceEEEEEeeccch--hhhcccccceeEEecc-CceEEEEEecCCC---------ccHHHHHHHHhhcC
Confidence 3899999999999999998764432 2344566666677664 6678999999998 335555543 5778
Q ss_pred cceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhc--------cCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQ--------KREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~--------~~~~~v~vSAktg~G 463 (536)
++++|++|++++.. ......++.+|......++|+++.+||.|+...-........ ...-++.|||++..|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999999998753 445566777888777889999999999999876443322211 123578999999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
|+.+.+||.++-.
T Consensus 170 id~~~~Wli~hsk 182 (186)
T KOG0075|consen 170 IDITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 221
>PLN03126 Elongation factor Tu; Provisional
Probab=99.48 E-value=7.3e-13 Score=144.47 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=91.0
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCcccc----------------ccccccccCCeeEEEEEeCCeeEEEeecccccccc
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLA----------------EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~----------------~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~l 374 (536)
+...|+++|++++|||||+++|++....+ +.....|++.....+.. ++..+.++||||+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh---- 154 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGH---- 154 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCH----
Confidence 34579999999999999999998531110 11112222222222322 5678999999998
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhHHH-------HH
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQKVK-------LE 446 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~~~-------~~ 446 (536)
..++..+...+..+|++++|+|+..+...+..+.+. .+..+ ++| +|+++||+|+.+..+... ..
T Consensus 155 ----~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~-~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 155 ----ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL-LAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred ----HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 234456677778899999999999877666555443 23333 577 678999999986432111 11
Q ss_pred h-c-----cCCCEEEEeccCCC
Q 009371 447 A-Q-----KREDVVCISALSGN 462 (536)
Q Consensus 447 ~-~-----~~~~~v~vSAktg~ 462 (536)
. . ...+++++||.+|.
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHhcCCCcCcceEEEEEccccc
Confidence 1 1 24689999999884
No 222
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.48 E-value=1.8e-13 Score=147.54 Aligned_cols=143 Identities=19% Similarity=0.153 Sum_probs=90.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccc-------------------------------cccccccCCeeEEEEEeCCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAE-------------------------------DRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~-------------------------------~~~~~Tld~ttr~i~l~~g~ 360 (536)
...|+++|+.++|||||+++|+...-.+. .....|++.....+.. ++.
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~~ 85 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DKY 85 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CCe
Confidence 34699999999999999999974211000 0112233333333433 567
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcch---HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLA---EQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~---~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+.+|||||+. .....+...+..+|++++|+|++++.. .+..+. ..++..++ ..|+|+|+||+|+.
T Consensus 86 ~i~iiDtpGh~--------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~-~~~~~~~~--~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 86 EVTIVDCPGHR--------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREH-AFLARTLG--INQLIVAINKMDSV 154 (426)
T ss_pred EEEEEECCCHH--------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHH-HHHHHHcC--CCeEEEEEEChhcc
Confidence 89999999972 233445556788999999999988732 222221 12233333 34789999999997
Q ss_pred CC-hhHH-------HHHh-c-----cCCCEEEEeccCCCCHHH
Q 009371 438 CD-PQKV-------KLEA-Q-----KREDVVCISALSGNGLDE 466 (536)
Q Consensus 438 ~~-~~~~-------~~~~-~-----~~~~~v~vSAktg~GIde 466 (536)
+. .+.. .... . ...+++++||++|.|+++
T Consensus 155 ~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 155 NYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 52 2111 1111 1 125799999999999986
No 223
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=3.7e-13 Score=134.35 Aligned_cols=162 Identities=21% Similarity=0.171 Sum_probs=117.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
.|.++|.||||||||+|+|.+.+........++.+++++.....++..+++|||||+.+....+ .+.-....+.+...|
T Consensus 41 nvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D-~~~r~~~~d~l~~~D 119 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD-AEHRQLYRDYLPKLD 119 (296)
T ss_pred eEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh-HHHHHHHHHHhhhcc
Confidence 4679999999999999999976665555566677777777666688899999999996532222 112233456678899
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----------h----HHH-------HHhccCC
Q 009371 394 LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----------Q----KVK-------LEAQKRE 451 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----------~----~~~-------~~~~~~~ 451 (536)
++++++|+.++.-..+...+..++-.. .++++++|+|.+|...+. . ... .....-.
T Consensus 120 LvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~ 197 (296)
T COG3596 120 LVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVK 197 (296)
T ss_pred EEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999887655555566655442 258999999999986541 0 011 1112235
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
|++.+|+..+.|++.|..++...+...
T Consensus 198 pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 198 PVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred CeEEeccccCccHHHHHHHHHHhCccc
Confidence 889999999999999999999988743
No 224
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.47 E-value=6.5e-13 Score=144.04 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=101.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc---cccccccccCCeeEEE---------------EEeC----------------
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATLDPTTRRV---------------QMKN---------------- 358 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tld~ttr~i---------------~l~~---------------- 358 (536)
..|+++|+..+|||||+.+|+|.... .+-....|++-..... .++.
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 46999999999999999999985431 1111111211100000 0111
Q ss_pred -CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCc-chHHHHHHHHHHHhhcCCCCCCEEEEEEcCCC
Q 009371 359 -GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHP-LAEQQIEAVDKVLSELDVSSIPKLMIWNKVDK 436 (536)
Q Consensus 359 -g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~-~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl 436 (536)
...+.++||||+ ....+.++..+..+|++++|+|+..+ ...+..+.+ .++..++. .++|+|+||+|+
T Consensus 115 ~~~~i~~IDtPGH--------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lgi--~~iIVvlNKiDl 183 (460)
T PTZ00327 115 LKRHVSFVDCPGH--------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMKL--KHIIILQNKIDL 183 (460)
T ss_pred ccceEeeeeCCCH--------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcCC--CcEEEEEecccc
Confidence 236889999997 23445667778899999999999975 344444333 34444443 468999999999
Q ss_pred CCChhH---HHHH-------hccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 437 VCDPQK---VKLE-------AQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 437 ~~~~~~---~~~~-------~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
.+.... .... .....++|++||++|.|++.|+++|.+.+..
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 863321 1111 1135689999999999999999999976654
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.46 E-value=7.4e-13 Score=141.45 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=95.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc------c----------cccccccccCCeeEEEEEeCCeeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV------L----------AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~------~----------~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~ 376 (536)
..|+++|+.++|||||+++|++... . .+.....|.+.....+. .++..+.++||||+.
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~----- 86 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA----- 86 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchH-----
Confidence 4699999999999999999984310 0 00112233333222222 245679999999982
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEE-EEEEcCCCCCChhHHH-------HHh-
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKL-MIWNKVDKVCDPQKVK-------LEA- 447 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piI-vVlNKiDl~~~~~~~~-------~~~- 447 (536)
.+...++..+..+|++++|+|+..+...+..+.+.. +..+ ++|.+ +|+||+|+.+..+... ...
T Consensus 87 ---~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~-~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 87 ---DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILL-ARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ---HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHH-HHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 233455666778999999999998765555554443 3332 56765 6899999986432211 111
Q ss_pred c-----cCCCEEEEeccCCC--------CHHHHHHHHHHHh
Q 009371 448 Q-----KREDVVCISALSGN--------GLDEFCSAVQEKL 475 (536)
Q Consensus 448 ~-----~~~~~v~vSAktg~--------GIdeL~~~I~~~l 475 (536)
. ...+++++||++|. ++..|+++|.+.+
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 1 12689999999885 3456666665544
No 226
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=4.1e-13 Score=142.28 Aligned_cols=184 Identities=17% Similarity=0.205 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEE
Q 009371 286 IGVLKKELESVRKHRKQYRNRR-VSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLL 364 (536)
Q Consensus 286 i~~Lk~eL~~l~~~r~~~r~~r-~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~L 364 (536)
+.+....++.+.+.|....... ...+.+++.++|+||+||||++|.++..++.+.+++|+|-.-..+.+.+ .-..+++
T Consensus 141 ~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy-kYlrwQV 219 (620)
T KOG1490|consen 141 IKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY-KYLRWQV 219 (620)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh-heeeeee
Confidence 3444555666777676655443 3556789999999999999999999999999999998887666666554 4457889
Q ss_pred eecccccccchhhH--HHHH-HHhHHHHHhccceEEEEeCCCcc---hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 365 TDTVGFIQKLPTTL--VAAF-RATLEEISESSLLVHVVDISHPL---AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 365 iDTpG~i~~lp~~l--~e~f-~~tl~ei~~aDliLlVvD~s~~~---~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
+||||+.+.--... .+.. -..+.++.. +|||+.|.|... ..+|...++.+-..+ .++|+|+|+||||+..
T Consensus 220 iDTPGILD~plEdrN~IEmqsITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 220 IDTPGILDRPEEDRNIIEMQIITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMR 295 (620)
T ss_pred cCCccccCcchhhhhHHHHHHHHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccC
Confidence 99999965321111 1111 123334433 589999998642 355666555543333 4899999999999987
Q ss_pred ChhHH-------HH-HhccCCCEEEEeccCCCCHHHHHHHHHHH
Q 009371 439 DPQKV-------KL-EAQKREDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 439 ~~~~~-------~~-~~~~~~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
..+.. .. ......+++.+|+.+.+|+-++...-++.
T Consensus 296 ~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 296 PEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred ccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHH
Confidence 54211 11 12234689999999999987755544443
No 227
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.45 E-value=1.7e-12 Score=126.45 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=89.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC----C--eeEEEeecccccccchhhHHHHHHH-hH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN----G--GEFLLTDTVGFIQKLPTTLVAAFRA-TL 386 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~----g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl 386 (536)
+|+++|.+|+|||||++++++..+.....+....+...+.+.+.+ + ..+.+|||+|. +.+.. .-
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~---------e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGS---------ESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCc---------hhHHHHHH
Confidence 589999999999999999998765432222211222233344421 2 35779999997 22222 22
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhc-------------------CCCCCCEEEEEEcCCCCCChhH-----
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDKVLSEL-------------------DVSSIPKLMIWNKVDKVCDPQK----- 442 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-------------------~~~~~piIvVlNKiDl~~~~~~----- 442 (536)
..+..+|++++|+|++++.+.+.+..|...+... +..+.|+|+|+||+|+.+....
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~ 152 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLV 152 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHH
Confidence 3467899999999999987776665543333221 2246899999999999754210
Q ss_pred HH----HHhccCCCEEEEeccCCC
Q 009371 443 VK----LEAQKREDVVCISALSGN 462 (536)
Q Consensus 443 ~~----~~~~~~~~~v~vSAktg~ 462 (536)
.. .....+.+.+.++|++..
T Consensus 153 ~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 153 LTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred hhHhhhHHHhcCCceEEEecCCcc
Confidence 00 112245678888888653
No 228
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.44 E-value=9.7e-13 Score=141.10 Aligned_cols=141 Identities=25% Similarity=0.212 Sum_probs=90.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccc---------------------------------ccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAED---------------------------------RLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~---------------------------------~~~~Tld~ttr~i~l~~g~ 360 (536)
+|+++|+.|+|||||+++|+...-.+.. ....|.+.....+.+ ++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DKR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CCe
Confidence 5899999999999999999643111100 001122322233333 567
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
.+.++||||+. .+...+...+..+|++++|+|+..+...+..+.+ .++..++ ..++|+|+||+|+....
T Consensus 81 ~~~liDtPGh~--------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 81 KFIVADTPGHE--------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYD 149 (406)
T ss_pred EEEEEeCCCHH--------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccch
Confidence 89999999972 2334455677899999999999887665544433 2344444 23688999999997532
Q ss_pred h-HH---HH-H----h---ccCCCEEEEeccCCCCHHH
Q 009371 441 Q-KV---KL-E----A---QKREDVVCISALSGNGLDE 466 (536)
Q Consensus 441 ~-~~---~~-~----~---~~~~~~v~vSAktg~GIde 466 (536)
. .+ .. . . ....+++++||++|.|+++
T Consensus 150 ~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 150 EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2 11 11 0 1 1234799999999999986
No 229
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1e-12 Score=140.54 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=114.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc---------------cccccccccccCCeeEEEEEeCC--eeEEEeecccccccch
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT---------------VLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLP 375 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~---------------~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp 375 (536)
..++||-+...|||||..+|+... ...+...+.|+...+..+.+.+| ..++++||||+.+...
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 358999999999999999986321 11223345666666666766554 4577999999954321
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------HHHHhcc
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------VKLEAQK 449 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------~~~~~~~ 449 (536)
..-..+..||++|+|+|++++...+....+...++. +..+|.|+||+|+...... .......
T Consensus 141 --------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 141 --------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred --------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 122335679999999999999988887776666654 7789999999999875421 1222234
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHhcccce
Q 009371 450 REDVVCISALSGNGLDEFCSAVQEKLKDSMV 480 (536)
Q Consensus 450 ~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~ 480 (536)
..+++.+|||+|.|+++++++|.+.+.....
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 5689999999999999999999999986543
No 230
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.43 E-value=4.2e-12 Score=123.32 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=104.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC--CeeEEEeecccccccchhhHHHHHHHhH-HHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN--GGEFLLTDTVGFIQKLPTTLVAAFRATL-EEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~--g~~i~LiDTpG~i~~lp~~l~e~f~~tl-~ei 389 (536)
.+|+++|..|||||||+++|.+..+.....+.... .......... ...+.+|||+|+ +.++... .++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~~Dt~gq---------~~~~~~~~~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGN-LDPAKTIEPYRRNIKLQLWDTAGQ---------EEYRSLRPEYY 75 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceee-eeEEEEEEeCCCEEEEEeecCCCH---------HHHHHHHHHHh
Confidence 47999999999999999999987665333322111 1122222222 346789999998 3344433 445
Q ss_pred HhccceEEEEeCCC-cchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH-------------H-Hh------c
Q 009371 390 SESSLLVHVVDISH-PLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK-------------L-EA------Q 448 (536)
Q Consensus 390 ~~aDliLlVvD~s~-~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~-------------~-~~------~ 448 (536)
..++++++++|.+. ....+..+.+...+......+.|+++|+||+|+........ . .. .
T Consensus 76 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (219)
T COG1100 76 RGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEV 155 (219)
T ss_pred cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhh
Confidence 88999999999987 34444455555555555445689999999999987532110 0 00 0
Q ss_pred cCCCEEEEecc--CCCCHHHHHHHHHHHhcc
Q 009371 449 KREDVVCISAL--SGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 449 ~~~~~v~vSAk--tg~GIdeL~~~I~~~l~~ 477 (536)
....++.+||+ ++.|+++++..+...+..
T Consensus 156 ~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 156 ANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred cccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 12348999999 999999999998887754
No 231
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.43 E-value=3.9e-12 Score=123.81 Aligned_cols=116 Identities=27% Similarity=0.411 Sum_probs=73.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe---CCeeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK---NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~---~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
|.|+++|++|||||||+++|.+..+... .++..+........ .+..+.+|||||+.+ ........+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~--------~~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK--------LRDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcEeecceEEEeecCCCCceEEEEECCCCHH--------HHHHHHHHH
Confidence 4699999999999999999997644211 11112222222221 356789999999832 112234456
Q ss_pred Hhc-cceEEEEeCCCcc-h-HHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCC
Q 009371 390 SES-SLLVHVVDISHPL-A-EQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 390 ~~a-DliLlVvD~s~~~-~-~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~ 439 (536)
..+ +++|+|+|++... . ....+.+..++.... ..+.|+++|+||+|+...
T Consensus 70 ~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 677 9999999998862 2 122233333433221 247899999999998653
No 232
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.43 E-value=2.3e-12 Score=125.96 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=71.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccc-------------------ccccccCCeeEEEEEe----CCeeEEEeecccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAED-------------------RLFATLDPTTRRVQMK----NGGEFLLTDTVGF 370 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~-------------------~~~~Tld~ttr~i~l~----~g~~i~LiDTpG~ 370 (536)
.|+++|+.|+|||||+++|+........ ....++......+.+. ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 4899999999999999999864322110 0011222222222221 1357889999998
Q ss_pred cccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 371 IQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 371 i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+ ....+...+..+|++++|+|+++.........+... ...++|+++|+||+|+.
T Consensus 82 ~~--------f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~----~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VN--------FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHA----ILEGLPIVLVINKIDRL 136 (213)
T ss_pred cc--------hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH----HHcCCCEEEEEECcccC
Confidence 32 123345667889999999999887654433322222 22358999999999986
No 233
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.42 E-value=1.5e-12 Score=132.41 Aligned_cols=87 Identities=29% Similarity=0.379 Sum_probs=70.6
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe----------------eEEEeecccccccchhhH
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG----------------EFLLTDTVGFIQKLPTTL 378 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~----------------~i~LiDTpG~i~~lp~~l 378 (536)
|+|||.||||||||+|+|++.+..+.+++|+|+++..+.+.+++.+ .+.++||||++.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999999988999999999999888875432 488999999986543321
Q ss_pred HHHHHHhHHHHHhccceEEEEeCC
Q 009371 379 VAAFRATLEEISESSLLVHVVDIS 402 (536)
Q Consensus 379 ~e~f~~tl~ei~~aDliLlVvD~s 402 (536)
..-...+..++.+|+++||+|+.
T Consensus 81 -glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 -GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred -HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11234577789999999999974
No 234
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.42 E-value=3.3e-13 Score=123.86 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=108.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccC--CeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHh-HHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLD--PTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRAT-LEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld--~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~t-l~e 388 (536)
++++++|..-+|||||+-+.+...+. .+-.+|+. ..++.+.+.+ ...+.+|||+|+ +.|... --+
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ---------ErfHALGPIY 82 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ---------ERFHALGPIY 82 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHHHHhhcccccccceeeeeeeeccch---------HhhhccCceE
Confidence 68999999999999999999876653 22334443 2445555532 236779999998 444432 224
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----HHHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----VKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----~~~~~~~~~~~v~vSAktg~G 463 (536)
++.++.+++|+|+++..+.+....|-.-|+.+-...+-+++|+||+||..+... .......+..++.+||+.+.|
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence 678999999999999887776665554455544456789999999999765322 112222356789999999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
|.+||+.+...+-
T Consensus 163 i~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 163 ISELFESLTAKMI 175 (218)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876543
No 235
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.41 E-value=1.4e-12 Score=147.27 Aligned_cols=142 Identities=23% Similarity=0.196 Sum_probs=90.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccc-----------cc----------------------ccccCCeeEEEEEeCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAED-----------RL----------------------FATLDPTTRRVQMKNG 359 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~-----------~~----------------------~~Tld~ttr~i~l~~g 359 (536)
..|+++|++|+|||||+++|+...-.+.. .. ..|.+.....+.+ ++
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~-~~ 103 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT-PK 103 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-CC
Confidence 46999999999999999999864322110 01 1122222222333 56
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
.++.|+||||+. .....+...+..+|++++|+|+..+...++.+.+. ++..++ ..++|+|+||+|+...
T Consensus 104 ~~~~liDtPG~~--------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~~--~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 104 RKFIVADTPGHE--------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLLG--IRHVVLAVNKMDLVDY 172 (632)
T ss_pred ceEEEEECCChH--------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHhC--CCeEEEEEEecccccc
Confidence 789999999972 22234455678999999999998776544433322 334443 2578899999999752
Q ss_pred h-hHHH----HH----h---ccCCCEEEEeccCCCCHHH
Q 009371 440 P-QKVK----LE----A---QKREDVVCISALSGNGLDE 466 (536)
Q Consensus 440 ~-~~~~----~~----~---~~~~~~v~vSAktg~GIde 466 (536)
. +... .. . ....+++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2 1111 11 1 1224699999999999974
No 236
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.41 E-value=2.8e-12 Score=124.47 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=109.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhH-HHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATL-EEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl-~ei 389 (536)
.+|+++|.+|+|||+|...+.+..+.. ++..+..+...+.+.+ ++. .+.++||+|.. .|.... ..+
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~~-~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~---------~~~~~~~~~~ 72 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFVE-DYDPTIEDSYRKELTV-DGEVCMLEILDTAGQE---------EFSAMRDLYI 72 (196)
T ss_pred eEEEEECCCCCCcchheeeeccccccc-ccCCCccccceEEEEE-CCEEEEEEEEcCCCcc---------cChHHHHHhh
Confidence 469999999999999999998876542 2222222444455555 444 45699999951 122222 236
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHH-hhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVL-SELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL-~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|+.++|+++++..+.+....+...+ +..+....|+++|+||+|+..... .........++++++||+.+.+
T Consensus 73 ~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~ 152 (196)
T KOG0395|consen 73 RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYN 152 (196)
T ss_pred ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcC
Confidence 7889999999999988766665554443 444556789999999999976322 1222344667899999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009371 464 LDEFCSAVQEKLKD 477 (536)
Q Consensus 464 IdeL~~~I~~~l~~ 477 (536)
++++|..|...+..
T Consensus 153 v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 153 VDEVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887765
No 237
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.41 E-value=2.8e-12 Score=124.08 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=93.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEE---EEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRR---VQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~---i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
+|+++|.+|||||||+|+|+|...............++.. +...+...+.+|||||+...... ..+.+.. ..+.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~-~~~~l~~--~~~~ 79 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP-PDDYLEE--MKFS 79 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCC-HHHHHHH--hCcc
Confidence 6999999999999999999986543211111111111111 11122347889999998532111 1111111 1245
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----------H-HHH-------Hh----
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----------K-VKL-------EA---- 447 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----------~-~~~-------~~---- 447 (536)
.+|++++|.|. +.+..+...+. .+... ++|+++|+||+|+..... . ... ..
T Consensus 80 ~~d~~l~v~~~--~~~~~d~~~~~-~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST--RFSSNDVKLAK-AIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC--CCCHHHHHHHH-HHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 67888887543 34444433333 34443 679999999999854211 1 000 00
Q ss_pred ccCCCEEEEecc--CCCCHHHHHHHHHHHhccc
Q 009371 448 QKREDVVCISAL--SGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 448 ~~~~~~v~vSAk--tg~GIdeL~~~I~~~l~~~ 478 (536)
...++++.+|+. .+.|+..|.+.|...|...
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 124579999998 6799999999999888764
No 238
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.41 E-value=4.8e-12 Score=132.94 Aligned_cols=89 Identities=29% Similarity=0.363 Sum_probs=72.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC----------------eeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG----------------GEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g----------------~~i~LiDTpG~i~~lp~ 376 (536)
.+|+|||.||||||||+|+|++....+.+++|+|.++..+.+.+++. ..+.++||||++.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 46999999999999999999999988889999999999888877553 25899999999764332
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCC
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDIS 402 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s 402 (536)
.. ..-...+..+..+|+++||+|+.
T Consensus 83 g~-glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GE-GLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HH-HHHHHHHHHHHhCCEEEEEEeCC
Confidence 21 12245677889999999999985
No 239
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.40 E-value=5.2e-12 Score=143.95 Aligned_cols=114 Identities=19% Similarity=0.166 Sum_probs=77.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccc------cc------------ccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLA------ED------------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~------~~------------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
+..|+|+|++|+|||||+|+|+...-.+ .+ ....|++.....+.+ ++..+.++||||+.+.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVDF 88 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcch
Confidence 4579999999999999999996421110 00 112333333444444 7889999999999431
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
...+...+..+|++++|+|+..+...++...+.. +.. .++|+++|+||+|+..
T Consensus 89 --------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 89 --------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQ-ANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred --------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHH-HHH---cCCCEEEEEECCCCCC
Confidence 1223455678999999999998766555444432 333 3689999999999874
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.40 E-value=2.1e-12 Score=141.06 Aligned_cols=145 Identities=21% Similarity=0.186 Sum_probs=92.1
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccc-----------cc----------------------cccCCeeEEEEEe
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDR-----------LF----------------------ATLDPTTRRVQMK 357 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-----------~~----------------------~Tld~ttr~i~l~ 357 (536)
+..+|+++|+.|+|||||+++|+...-.+... .. .|++.....+. .
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~-~ 104 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS-T 104 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec-c
Confidence 34579999999999999999997542111100 11 12222222222 3
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
++..+.++||||+. .....+...+..+|++++|+|+..+...++.+.+ .++..++. .|+|+|+||+|+.
T Consensus 105 ~~~~i~~iDTPGh~--------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg~--~~iIvvvNKiD~~ 173 (474)
T PRK05124 105 EKRKFIIADTPGHE--------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLGI--KHLVVAVNKMDLV 173 (474)
T ss_pred CCcEEEEEECCCcH--------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhCC--CceEEEEEeeccc
Confidence 56789999999972 2223455567889999999999887654433332 23444442 4789999999997
Q ss_pred CChh-HHH----HH----h----ccCCCEEEEeccCCCCHHHH
Q 009371 438 CDPQ-KVK----LE----A----QKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 438 ~~~~-~~~----~~----~----~~~~~~v~vSAktg~GIdeL 467 (536)
.... ... .. . ....+++++||++|.|++++
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 4321 111 11 0 12467999999999999764
No 241
>PRK00007 elongation factor G; Reviewed
Probab=99.39 E-value=8.7e-12 Score=142.15 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCEEEEEccCCCChHHHHHhhh---CCcccc---c------------cccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLT---GATVLA---E------------DRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~---g~~~~~---~------------~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
+..|+|+|++|+|||||+++|+ |..... . .....|++.....+.+ ++..++++||||+.+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~- 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD- 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH-
Confidence 4579999999999999999996 321110 0 1223344444444544 788999999999832
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
+...+...+..+|++++|+|+..+...++...+..+ .. .++|.|+++||+|+...
T Consensus 88 -------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~-~~---~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 -------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQA-DK---YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred -------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 223456667889999999999988777665554443 33 36899999999998753
No 242
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=3.7e-12 Score=125.16 Aligned_cols=184 Identities=25% Similarity=0.327 Sum_probs=131.3
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
+-.+|+++|.|.+|||||+..+++.......+.|+|+..-.+.+.+ +|..++++|.||++....+.... -+..+.-.+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGR-GRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGR-GRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCC-CceEEEEee
Confidence 3458999999999999999999998887888889998888888877 89999999999998654433211 122333456
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCC------------------------------------------------
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDV------------------------------------------------ 422 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~------------------------------------------------ 422 (536)
.||++++|.|++... .+.+.+..-|+.+|.
T Consensus 139 taDlilMvLDatk~e--~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Nae 216 (364)
T KOG1486|consen 139 TADLILMVLDATKSE--DQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAE 216 (364)
T ss_pred cccEEEEEecCCcch--hHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccce
Confidence 799999999998653 223333333333221
Q ss_pred --------------------CCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcccceEE
Q 009371 423 --------------------SSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDSMVWV 482 (536)
Q Consensus 423 --------------------~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~ 482 (536)
..++.+.|.||+|...-++..+. ...+..+-+||..+.|++.|++.|.+.+.-.+++.
T Consensus 217 vl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrl--Ar~PnsvViSC~m~lnld~lle~iWe~l~L~rvYt 294 (364)
T KOG1486|consen 217 VLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRL--ARQPNSVVISCNMKLNLDRLLERIWEELNLVRVYT 294 (364)
T ss_pred EEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHH--hcCCCcEEEEeccccCHHHHHHHHHHHhceEEEEe
Confidence 12578899999998765443332 23466788999999999999999999998766654
Q ss_pred EEe--ec-----------CChhHHHHHHHHh
Q 009371 483 EAL--VP-----------FDKGELLSTIHQV 500 (536)
Q Consensus 483 ~~~--ip-----------~~~~~l~~~i~~~ 500 (536)
... .| .+.++++..+|+.
T Consensus 295 Kk~g~~Pdfdd~~vlr~g~tve~~C~~iHr~ 325 (364)
T KOG1486|consen 295 KKKGQRPDFDDPLVLRKGSTVEDVCHRIHRT 325 (364)
T ss_pred cCCCCCCCCCCceEEeCCCcHHHHHHHHHHH
Confidence 321 11 2345678888864
No 243
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.1e-11 Score=111.91 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=107.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
+++..|+|.-|+|||.|+..++...+...-.....+...++-+.. .|. ++.+|||+|. +.|+. +..+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagq---------erfravtrsy 80 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQ---------ERFRAVTRSY 80 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccH---------HHHHHHHHHH
Confidence 457889999999999999999977665322222334555666666 443 6779999998 55665 6677
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----HHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----KLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----~~~~~~~~~~v~vSAktg~G 463 (536)
++.+...++|+|++...+...+..|..-.+.+-..+..+++++||.|+....+.. ......+.-++..||++|.+
T Consensus 81 yrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~n 160 (215)
T KOG0097|consen 81 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQN 160 (215)
T ss_pred hccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCc
Confidence 8899999999999987766665555444444444566788999999997654321 11223345689999999999
Q ss_pred HHHHHHHHHHH
Q 009371 464 LDEFCSAVQEK 474 (536)
Q Consensus 464 IdeL~~~I~~~ 474 (536)
+++.+-.-...
T Consensus 161 vedafle~akk 171 (215)
T KOG0097|consen 161 VEDAFLETAKK 171 (215)
T ss_pred HHHHHHHHHHH
Confidence 98866544433
No 244
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.37 E-value=6e-13 Score=119.03 Aligned_cols=151 Identities=24% Similarity=0.294 Sum_probs=111.4
Q ss_pred EEccCCCChHHHHHhhhCCcccccccccccc--CCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 317 LVGYTNAGKSTLLNRLTGATVLAEDRLFATL--DPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 317 IVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl--d~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
++|.+++|||.|+-++-...+.. +...+|+ +....-+.. ++. ++++|||+|+ +.|++ +-.+++.
T Consensus 2 llgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~-~~~kvklqiwdtagq---------erfrsvt~ayyrd 70 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQ---------ERFRSVTHAYYRD 70 (192)
T ss_pred ccccCccCceEEEEEeccCceec-Cceeeeeeeccccceecc-CCcEEEEEEeeccch---------HHHhhhhHhhhcc
Confidence 68999999999987765443332 2222333 333333333 333 6789999998 56766 6677899
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC-----hhHHHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD-----PQKVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~-----~~~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
||.+++++|+.+..+.+..+.|..-+.+.+...+.+.+++||||+..+ .+..+.......|+.++||++|-|++-
T Consensus 71 a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDL 150 (192)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhH
Confidence 999999999999888777777766666767677888999999999653 223334445578999999999999999
Q ss_pred HHHHHHHHhccc
Q 009371 467 FCSAVQEKLKDS 478 (536)
Q Consensus 467 L~~~I~~~l~~~ 478 (536)
.+-.|.+.+...
T Consensus 151 af~~ia~~l~k~ 162 (192)
T KOG0083|consen 151 AFLAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 245
>PRK12739 elongation factor G; Reviewed
Probab=99.37 E-value=1.1e-11 Score=141.32 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=80.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcc---c---cc------------cccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATV---L---AE------------DRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~---~---~~------------~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
+..|+|+|+.|+|||||+++|+...- . +. .....|++.....+.+ ++..++++||||+.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~- 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVD- 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHH-
Confidence 45799999999999999999964210 0 01 1223344444444544 788999999999832
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
....+...+..+|++++|+|+..+...++...+..+ .. .++|.|+++||+|+...
T Consensus 86 -------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~-~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 -------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQA-DK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred -------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 233466677889999999999988766555444332 22 36899999999998753
No 246
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.36 E-value=4.2e-12 Score=111.47 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=70.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCC-eeE-EEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP-TTR-RVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~-ttr-~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
+|+|+|.+|||||||+++|++..... ........+ +.. ......+ ..+.+||++|... +.. ....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~ 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPD-NSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE---------FYSQHQFF 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS---------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC---------HHCTSHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcc-cccccccCCCcEEEEEEEecCCceEEEEEecCccce---------ecccccch
Confidence 48999999999999999999875540 001111111 111 1222222 2477999999822 111 1112
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVD 435 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiD 435 (536)
+..+|++++|+|++++.+......+..++..+. ..+.|+++|+||.|
T Consensus 71 ~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 678999999999999876666555555555553 24699999999998
No 247
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.34 E-value=1.1e-11 Score=134.48 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=88.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc-------------------------------cccccccCCeeEEEEEeCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE-------------------------------DRLFATLDPTTRRVQMKNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~-------------------------------~~~~~Tld~ttr~i~l~~g~~ 361 (536)
..|+++|+.++|||||+.+|+...-.+. .....|.+.....+. +++..
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~~~~~ 86 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPKYY 86 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-cCCeE
Confidence 4699999999999999999864110000 011122332223333 36778
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcch-------HHHHHHHHHHHhhcCCCCCC-EEEEEEc
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLA-------EQQIEAVDKVLSELDVSSIP-KLMIWNK 433 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~-------~~~~~~v~~vL~~l~~~~~p-iIvVlNK 433 (536)
+.|+||||+ ..+...+...+..+|++++|+|+..+.. .+..+.+ .++..+ ++| +|+++||
T Consensus 87 i~lIDtPGh--------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~---gi~~iiv~vNK 154 (446)
T PTZ00141 87 FTIIDAPGH--------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL---GVKQMIVCINK 154 (446)
T ss_pred EEEEECCCh--------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc---CCCeEEEEEEc
Confidence 999999998 2344556677789999999999987652 2333332 234443 556 5789999
Q ss_pred CCCCC--C-hhHH-------HHHh------ccCCCEEEEeccCCCCHHH
Q 009371 434 VDKVC--D-PQKV-------KLEA------QKREDVVCISALSGNGLDE 466 (536)
Q Consensus 434 iDl~~--~-~~~~-------~~~~------~~~~~~v~vSAktg~GIde 466 (536)
+|... . ...+ .... ....++|++||.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99532 1 1111 1110 0136799999999999964
No 248
>PRK13351 elongation factor G; Reviewed
Probab=99.32 E-value=4.2e-11 Score=136.61 Aligned_cols=185 Identities=18% Similarity=0.207 Sum_probs=112.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc------------ccc------ccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL------------AED------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~------------~~~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
...|+|+|+.|+|||||+++|+...-. ..+ ....|+......+.+ ++..+.+|||||+.+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d- 85 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID- 85 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH-
Confidence 357999999999999999999742100 000 011223333334444 678999999999832
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCE
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDV 453 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~ 453 (536)
....+...+..+|++++|+|++.+........+.. + ...++|+++|+||+|+..
T Consensus 86 -------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~---~~~~~p~iiviNK~D~~~--------------- 139 (687)
T PRK13351 86 -------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-A---DRYGIPRLIFINKMDRVG--------------- 139 (687)
T ss_pred -------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-H---HhcCCCEEEEEECCCCCC---------------
Confidence 22334556788999999999998776555444432 2 234789999999999653
Q ss_pred EEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEcc---CceEEEEEcCHHHHHHHHHH
Q 009371 454 VCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTE---NGTLVKAHVPLRFARLLTPM 530 (536)
Q Consensus 454 v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~---~g~~~~~~lp~~~~~~~~~~ 530 (536)
..+++.++.|.+.+......+ .+|...+..+..+.+........|.. .+......+|..+......+
T Consensus 140 --------~~~~~~~~~i~~~l~~~~~~~--~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (687)
T PRK13351 140 --------ADLFKVLEDIEERFGKRPLPL--QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEA 209 (687)
T ss_pred --------CCHHHHHHHHHHHHCCCeEEE--EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHH
Confidence 346777777777776654333 35655443332222222233334432 12333456787777666666
Q ss_pred HHhh
Q 009371 531 RQMC 534 (536)
Q Consensus 531 ~~~l 534 (536)
+..+
T Consensus 210 ~~~l 213 (687)
T PRK13351 210 REKL 213 (687)
T ss_pred HHHH
Confidence 5543
No 249
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.32 E-value=3.3e-11 Score=133.05 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=96.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc--cc----cc---ccccc-------------ccCCeeEEEEEeCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT--VL----AE---DRLFA-------------TLDPTTRRVQMKNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~--~~----~~---~~~~~-------------Tld~ttr~i~l~~g~~i~LiDTpG~ 370 (536)
..|+|+|++|||||||+++|+... .. +. +...+ ++......+. +++..+++|||||+
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-~~~~~inliDTPG~ 89 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-YRDCLINLLDTPGH 89 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-ECCEEEEEEECCCc
Confidence 369999999999999999996311 00 00 00001 1111112233 36788999999998
Q ss_pred cccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccC
Q 009371 371 IQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKR 450 (536)
Q Consensus 371 i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~ 450 (536)
.+ +...+...+..+|++++|+|++.+........+ ... ...++|+++++||+|+..
T Consensus 90 ~d--------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~-~~~---~~~~iPiiv~iNK~D~~~------------ 145 (526)
T PRK00741 90 ED--------FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLM-EVC---RLRDTPIFTFINKLDRDG------------ 145 (526)
T ss_pred hh--------hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHH-HHH---HhcCCCEEEEEECCcccc------------
Confidence 22 223355567889999999999887644433322 222 334789999999999642
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEE
Q 009371 451 EDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEY 508 (536)
Q Consensus 451 ~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y 508 (536)
....++++.|.+.+......+ .+|...+.-+..+.+......+.|
T Consensus 146 -----------a~~~~~l~~i~~~l~~~~~p~--~~Pig~~~~f~Gvvdl~~~~~~~~ 190 (526)
T PRK00741 146 -----------REPLELLDEIEEVLGIACAPI--TWPIGMGKRFKGVYDLYNDEVELY 190 (526)
T ss_pred -----------cCHHHHHHHHHHHhCCCCeeE--EeccccCCceeEEEEeecceeeec
Confidence 345566777777776554443 367666555544444444444445
No 250
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.32 E-value=5.3e-11 Score=117.82 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=84.5
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
...|+++|++|+|||||+|+|.+..... ......++. .+...++..+.++||||.+ ..++..+..
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~---~~~~~~g~i-~i~~~~~~~i~~vDtPg~~-----------~~~l~~ak~ 103 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQ---NISDIKGPI-TVVTGKKRRLTFIECPNDI-----------NAMIDIAKV 103 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccC---ccccccccE-EEEecCCceEEEEeCCchH-----------HHHHHHHHh
Confidence 4579999999999999999998752110 001111111 1222367789999999862 334455678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEE-EEEEcCCCCCChhHH---H----H----HhccCCCEEEEecc
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKL-MIWNKVDKVCDPQKV---K----L----EAQKREDVVCISAL 459 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piI-vVlNKiDl~~~~~~~---~----~----~~~~~~~~v~vSAk 459 (536)
+|++++|+|++.+....+.. +...+.. .+.|.+ +|+||+|+....... . . ....+.+++++||+
T Consensus 104 aDvVllviDa~~~~~~~~~~-i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 104 ADLVLLLIDASFGFEMETFE-FLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred cCEEEEEEecCcCCCHHHHH-HHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 99999999998776554433 3333333 356754 599999997543211 0 0 11245689999999
Q ss_pred CCC
Q 009371 460 SGN 462 (536)
Q Consensus 460 tg~ 462 (536)
+.-
T Consensus 180 ~~~ 182 (225)
T cd01882 180 VHG 182 (225)
T ss_pred cCC
Confidence 873
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.30 E-value=4.6e-11 Score=131.99 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=95.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc--cc----cccc---cccccC-------------CeeEEEEEeCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT--VL----AEDR---LFATLD-------------PTTRRVQMKNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~--~~----~~~~---~~~Tld-------------~ttr~i~l~~g~~i~LiDTpG~ 370 (536)
..|+|+|++|||||||+++|+... .. +.+. ..++.| .....+. +++..+.++||||+
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDTPG~ 90 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDTPGH 90 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEECCCh
Confidence 469999999999999999985211 10 0000 001111 1112222 36788999999998
Q ss_pred cccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccC
Q 009371 371 IQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKR 450 (536)
Q Consensus 371 i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~ 450 (536)
. .....+...+..+|++++|+|++......... +.+.+.. .++|+++++||+|+..
T Consensus 91 ~--------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~-l~~~~~~---~~~PiivviNKiD~~~------------ 146 (527)
T TIGR00503 91 E--------DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRK-LMEVTRL---RDTPIFTFMNKLDRDI------------ 146 (527)
T ss_pred h--------hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-HHHHHHh---cCCCEEEEEECccccC------------
Confidence 2 22233556678899999999998875444333 2333333 4689999999999642
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEE
Q 009371 451 EDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEY 508 (536)
Q Consensus 451 ~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y 508 (536)
...+++++.|.+.+...... ..+|...+..+..+.+......+.|
T Consensus 147 -----------~~~~~ll~~i~~~l~~~~~~--~~~PIg~~~~f~gv~d~l~~~~~~y 191 (527)
T TIGR00503 147 -----------RDPLELLDEVENELKINCAP--ITWPIGCGKLFKGVYHLLKDETYLY 191 (527)
T ss_pred -----------CCHHHHHHHHHHHhCCCCcc--EEEEecCCCceeEEEEcccCcceec
Confidence 24566666666666644333 3355555555544444444444445
No 252
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.28 E-value=2.2e-11 Score=120.41 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=74.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccc----------------cccccccCCeeEEEEEe-C--------CeeEEEeecc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAE----------------DRLFATLDPTTRRVQMK-N--------GGEFLLTDTV 368 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~----------------~~~~~Tld~ttr~i~l~-~--------g~~i~LiDTp 368 (536)
.|+++|+.++|||||+.+|+...-... .....|+......+.+. . +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 489999999999999999974321100 00112222222223332 1 4578899999
Q ss_pred cccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 369 GFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 369 G~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
|+.+ ....+...+..+|++++|+|+..+...+....+..... .++|+++|+||+|+.
T Consensus 82 G~~~--------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD--------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc--------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH----cCCCEEEEEECCCcc
Confidence 9832 22345566788999999999998876665554444332 367999999999986
No 253
>PLN00023 GTP-binding protein; Provisional
Probab=99.28 E-value=2.7e-11 Score=125.26 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=78.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC--------------CeeEEEeecccccccchhhH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN--------------GGEFLLTDTVGFIQKLPTTL 378 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~--------------g~~i~LiDTpG~i~~lp~~l 378 (536)
.+|+++|..|||||||++++.+..+.....+....+.....+.+.+ ...+.||||+|.
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq-------- 93 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH-------- 93 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC--------
Confidence 4799999999999999999998755322222211222223344421 135789999997
Q ss_pred HHHHHHh-HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcC------------CCCCCEEEEEEcCCCCCC
Q 009371 379 VAAFRAT-LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELD------------VSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 379 ~e~f~~t-l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~------------~~~~piIvVlNKiDl~~~ 439 (536)
+.|... -..+..+|++|+|+|+++..+...+..|...+...+ ..++|+++|+||+|+...
T Consensus 94 -ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 94 -ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred -hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 223332 234678999999999999877666665544444432 125799999999999653
No 254
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.3e-11 Score=114.82 Aligned_cols=154 Identities=24% Similarity=0.265 Sum_probs=110.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
..|.++|--||||||++..|--.++... ..|+......+.+ .+..+.+||..|+.+-.|. ...++.+.
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~y-kn~~f~vWDvGGq~k~R~l--------W~~Y~~~t 85 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEY-KNISFTVWDVGGQEKLRPL--------WKHYFQNT 85 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEE-cceEEEEEecCCCcccccc--------hhhhccCC
Confidence 3699999999999999999865443211 3455556667777 6889999999998321111 12345788
Q ss_pred cceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH------HH--HhccCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV------KL--EAQKREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~------~~--~~~~~~~~v~vSAktg~G 463 (536)
+++|+|+|+++... .+..+.+..++......+.|+++..||.|+....... .. .......+-.++|.+|+|
T Consensus 86 ~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 86 QGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred cEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 99999999998753 3445566777777666789999999999987653211 11 111234567899999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
+.+-++|+.+.+...
T Consensus 166 L~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887653
No 255
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.2e-11 Score=112.06 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=101.7
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe----C----C--eeEEEeecccccccchhhHHHHHHH
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK----N----G--GEFLLTDTVGFIQKLPTTLVAAFRA 384 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~----~----g--~~i~LiDTpG~i~~lp~~l~e~f~~ 384 (536)
...+|.+|+||||++-..+...+...-.....+|....++.+. + + ..+.+|||+|+ +.|++
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ---------ERFRS 82 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ---------ERFRS 82 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH---------HHHHH
Confidence 4567999999999999988766543211222344444444441 1 1 25679999998 55665
Q ss_pred -hHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCC----CCCCEEEEEEcCCCCCChhH-----HHHHhccCCCEE
Q 009371 385 -TLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDV----SSIPKLMIWNKVDKVCDPQK-----VKLEAQKREDVV 454 (536)
Q Consensus 385 -tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~----~~~piIvVlNKiDl~~~~~~-----~~~~~~~~~~~v 454 (536)
|-.-++.|-..++++|.++..+.- .+..|+.++.. .+--+++++||+|+.+.... .........|+|
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFL---nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYf 159 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFL---NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYF 159 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHH---HHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCee
Confidence 445568888999999998754433 34455555542 23447889999999875432 223334578999
Q ss_pred EEeccCCCCHHHHHHHHHHHhcc
Q 009371 455 CISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
++||-+|.|+++..+.+.+.+-+
T Consensus 160 ETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 160 ETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred eeccccCcCHHHHHHHHHHHHHH
Confidence 99999999998877777665543
No 256
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.26 E-value=4.9e-11 Score=129.39 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=87.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc-------------------------------ccccccccCCeeEEEEEeCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA-------------------------------EDRLFATLDPTTRRVQMKNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~-------------------------------~~~~~~Tld~ttr~i~l~~g~~ 361 (536)
..|+++|+.++|||||+-+|+...-.+ +.....|++.....+. .++..
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~ 86 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TTKYY 86 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CCCEE
Confidence 469999999999999998886311000 0001112222222222 25678
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchH------HHHHHHHHHHhhcCCCCCC-EEEEEEcC
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAE------QQIEAVDKVLSELDVSSIP-KLMIWNKV 434 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~------~~~~~v~~vL~~l~~~~~p-iIvVlNKi 434 (536)
+.++||||+ .++...+...+..+|++++|+|+..+..+ .+......++..+ ++| +|+++||+
T Consensus 87 i~liDtPGh--------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKm 155 (447)
T PLN00043 87 CTVIDAPGH--------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTL---GVKQMICCCNKM 155 (447)
T ss_pred EEEEECCCH--------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcc
Confidence 999999998 34556677778899999999999875321 1222222233333 454 68899999
Q ss_pred CCCCC---hhHH-------HHH-hc-----cCCCEEEEeccCCCCHHH
Q 009371 435 DKVCD---PQKV-------KLE-AQ-----KREDVVCISALSGNGLDE 466 (536)
Q Consensus 435 Dl~~~---~~~~-------~~~-~~-----~~~~~v~vSAktg~GIde 466 (536)
|+.+. ...+ ... .. ...+++++||++|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 98631 1111 111 11 135799999999999853
No 257
>PTZ00099 rab6; Provisional
Probab=99.25 E-value=1.1e-10 Score=111.36 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=75.1
Q ss_pred eeEEEeecccccccchhhHHHHHHH-hHHHHHhccceEEEEeCCCcchHHHHHHHH-HHHhhcCCCCCCEEEEEEcCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESSLLVHVVDISHPLAEQQIEAVD-KVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aDliLlVvD~s~~~~~~~~~~v~-~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
..+.||||+|.. .+.. .-..+..||++|+|+|++++.+.+....+. .++.. ...+.|+++|+||+|+.
T Consensus 29 v~l~iwDt~G~e---------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~-~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 29 VRLQLWDTAGQE---------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE-RGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEECCChH---------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccc
Confidence 467899999982 2222 223468899999999999976655544333 33333 23468999999999986
Q ss_pred CCh-----hHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 438 CDP-----QKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 438 ~~~-----~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
... +...........++++||++|.|+++++++|.+.+..
T Consensus 99 ~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 99 DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 421 1112222234568999999999999999999988865
No 258
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.2e-11 Score=111.85 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=110.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc-----ccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhH-
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV-----LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATL- 386 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~-----~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl- 386 (536)
..|.|+|.-||||||++.++-.... .......+|..-..+++.+ ++.++.+||.-|. +..++..
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQ---------e~lrSlw~ 87 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQ---------ESLRSLWK 87 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCCh---------HHHHHHHH
Confidence 3589999999999999998743211 0112234455555667777 5788999999997 3333332
Q ss_pred HHHHhccceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---------HHhccCCCEEEE
Q 009371 387 EEISESSLLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---------LEAQKREDVVCI 456 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---------~~~~~~~~~v~v 456 (536)
.++..++++++|+|++++.. ++....+++++..-...+.|+++.+||.|+....+... .......++.+|
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccc
Confidence 34577999999999998643 33344455566555567899999999999876533211 112245689999
Q ss_pred eccCCCCHHHHHHHHHHHhccc
Q 009371 457 SALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~l~~~ 478 (536)
||.+|+|+++-.+|+...+...
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999988776
No 259
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=3.5e-11 Score=127.22 Aligned_cols=154 Identities=26% Similarity=0.299 Sum_probs=107.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc---------------ccccccccccCCeeEEEEE--eCCe--eEEEeecccccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV---------------LAEDRLFATLDPTTRRVQM--KNGG--EFLLTDTVGFIQKL 374 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~---------------~~~~~~~~Tld~ttr~i~l--~~g~--~i~LiDTpG~i~~l 374 (536)
..+|+.+-..|||||..+|....- ..+...+.|+...+-.+.+ .+|. .+.++||||+.+..
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 478999999999999999864211 1122234444444444444 2333 56799999995422
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HHHHHh-----c
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKLEA-----Q 448 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~~~-----~ 448 (536)
-..-..+..|.+.++|+|++++...+.+..+.-.+.. +.-+|-|+||+||...+. ...... .
T Consensus 91 --------YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpervk~eIe~~iGi 158 (603)
T COG0481 91 --------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERVKQEIEDIIGI 158 (603)
T ss_pred --------EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHHHHHHHHHhCC
Confidence 1122335678999999999999888877766666654 678999999999987542 222211 1
Q ss_pred cCCCEEEEeccCCCCHHHHHHHHHHHhcccc
Q 009371 449 KREDVVCISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 449 ~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
.....+.+|||+|.||++++++|.+.+....
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 2346899999999999999999999887543
No 260
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.23 E-value=2.2e-10 Score=108.26 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=102.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccc----------ccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRL----------FATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF 382 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~----------~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f 382 (536)
.+|+++|+-|+||||++.+++........-. -+|+....+.+.+.++..+.++||||+ ..|
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq---------~RF 81 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ---------ERF 81 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc---------HHH
Confidence 5799999999999999999987643111000 122223334555555678999999998 445
Q ss_pred HHhHHH-HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCC-CCEEEEEEcCCCCCCh--hHHHHHh-c--cCCCEEE
Q 009371 383 RATLEE-ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSS-IPKLMIWNKVDKVCDP--QKVKLEA-Q--KREDVVC 455 (536)
Q Consensus 383 ~~tl~e-i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~-~piIvVlNKiDl~~~~--~~~~~~~-~--~~~~~v~ 455 (536)
+..++- .+.++.+++++|.+.+....... ++..+...+ +|+++++||.|+.+.. +.+.... . ...|+|.
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~----ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEE----IIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHH----HHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceee
Confidence 555443 35689999999999987763333 233333334 8999999999998753 2232222 1 3678999
Q ss_pred EeccCCCCHHHHHHHHHHH
Q 009371 456 ISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 456 vSAktg~GIdeL~~~I~~~ 474 (536)
++|.+++|..+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999988887665
No 261
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.4e-11 Score=124.46 Aligned_cols=88 Identities=28% Similarity=0.391 Sum_probs=71.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC------------C-----eeEEEeecccccccch
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN------------G-----GEFLLTDTVGFIQKLP 375 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~------------g-----~~i~LiDTpG~i~~lp 375 (536)
..++|||-||+|||||+|+++...+.+.+++|+|++|..+.+.+++ . ..+.++|.+|++....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 4699999999999999999999998889999999999988777532 1 2467999999976443
Q ss_pred --hhHHHHHHHhHHHHHhccceEEEEeCCC
Q 009371 376 --TTLVAAFRATLEEISESSLLVHVVDISH 403 (536)
Q Consensus 376 --~~l~e~f~~tl~ei~~aDliLlVvD~s~ 403 (536)
..+... .|..++.+|+++||+|++.
T Consensus 83 ~GeGLGNk---FL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNK---FLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchH---HHHhhhhcCeEEEEEEecC
Confidence 233333 4677899999999999973
No 262
>PRK13768 GTPase; Provisional
Probab=99.21 E-value=1.1e-10 Score=117.61 Aligned_cols=115 Identities=22% Similarity=0.340 Sum_probs=73.3
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHh--ccceEEEEeCCCcchHHHHHHHH--HHHhhcCCCCCCEEEEEEcCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISE--SSLLVHVVDISHPLAEQQIEAVD--KVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~--aDliLlVvD~s~~~~~~~~~~v~--~vL~~l~~~~~piIvVlNKiD 435 (536)
..++++||||..+.... ..........+.. ++++++|+|++......+..... ....... .++|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~--~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF--RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh--hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHh
Confidence 36899999998542211 1112222333333 89999999997765544433222 1112122 3789999999999
Q ss_pred CCCChhHHHH---Hh------------------------------ccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 436 KVCDPQKVKL---EA------------------------------QKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 436 l~~~~~~~~~---~~------------------------------~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+....+.... .. ....+++++||+++.|+++|+++|.+.+..
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 174 LLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 9875432110 00 122478999999999999999999988753
No 263
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.21 E-value=1.2e-10 Score=121.56 Aligned_cols=98 Identities=21% Similarity=0.304 Sum_probs=64.6
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHH-HHhhcCCCCCCEEEEEEcCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDK-VLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~-vL~~l~~~~~piIvVlNKiDl~ 437 (536)
|..++|+||+|..... .. -...+|++++|++...+. ++..... .+ ....++|+||+|+.
T Consensus 148 g~d~viieT~Gv~qs~----~~-------i~~~aD~vlvv~~p~~gd---~iq~~k~gi~------E~aDIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSE----TA-------VAGMVDFFLLLQLPGAGD---ELQGIKKGIM------ELADLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccch----hH-------HHHhCCEEEEEecCCchH---HHHHHHhhhh------hhhheEEeehhccc
Confidence 5688999999985321 11 145699999997643332 2222222 22 22348999999988
Q ss_pred CChhH------HHHHh--------ccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 438 CDPQK------VKLEA--------QKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 438 ~~~~~------~~~~~--------~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
..... +.... .+.+|++++||++|.|+++|++.|.+.+.
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 64321 11111 12268999999999999999999999876
No 264
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.19 E-value=5.6e-10 Score=111.60 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=79.8
Q ss_pred CCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCee-----------EE------------------------
Q 009371 309 SVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTT-----------RR------------------------ 353 (536)
Q Consensus 309 ~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~tt-----------r~------------------------ 353 (536)
....|.++++|++||||||++++|+|..+...+.-..|..|+. ..
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999875322111111111111 00
Q ss_pred ----------------EEEeCCeeEEEeecccccccc----hhhHHHHHHH-hHHHHH-hccceEEEEeCCCcchHHHHH
Q 009371 354 ----------------VQMKNGGEFLLTDTVGFIQKL----PTTLVAAFRA-TLEEIS-ESSLLVHVVDISHPLAEQQIE 411 (536)
Q Consensus 354 ----------------i~l~~g~~i~LiDTpG~i~~l----p~~l~e~f~~-tl~ei~-~aDliLlVvD~s~~~~~~~~~ 411 (536)
+.-++...+.++||||+.... +......+.. +..++. ..+++++|+|+.......+..
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 001223568899999996421 2333334444 444555 346999999997765544422
Q ss_pred HHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 412 AVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 412 ~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
++.+.+...+.|+++|+||+|..+..
T Consensus 183 ---~ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 183 ---KLAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred ---HHHHHHHHcCCcEEEEEECCCCCCcc
Confidence 23334444578999999999987643
No 265
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.18 E-value=6.3e-10 Score=111.94 Aligned_cols=127 Identities=12% Similarity=0.107 Sum_probs=75.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccc-cccccccCCeeEEEEEeCCeeEEEeecccccccch--hhHHHHHHHhHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAE-DRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP--TTLVAAFRATLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~-~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp--~~l~e~f~~tl~e 388 (536)
..+|+++|.+|||||||+|+|+|...... .....|...+..... .+|..+.++||||+.+... .............
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT-VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE-ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 35799999999999999999999765322 111222222222222 3678899999999965421 1111111111122
Q ss_pred H--HhccceEEEEeCCC-cchHHHHHHHHHHHhhcCC-CCCCEEEEEEcCCCCCC
Q 009371 389 I--SESSLLVHVVDISH-PLAEQQIEAVDKVLSELDV-SSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 389 i--~~aDliLlVvD~s~-~~~~~~~~~v~~vL~~l~~-~~~piIvVlNKiDl~~~ 439 (536)
+ ...|++++|..++. .....+...+..+...++. .-.++++|+||+|...+
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 2 24688888865553 2334444555544444442 12579999999998754
No 266
>PRK12740 elongation factor G; Reviewed
Probab=99.16 E-value=6.7e-10 Score=126.39 Aligned_cols=108 Identities=20% Similarity=0.186 Sum_probs=70.4
Q ss_pred EccCCCChHHHHHhhhCCccc---cc---------c------ccccccCCeeEEEEEeCCeeEEEeecccccccchhhHH
Q 009371 318 VGYTNAGKSTLLNRLTGATVL---AE---------D------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLV 379 (536)
Q Consensus 318 VG~tnAGKSTLlNaL~g~~~~---~~---------~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~ 379 (536)
+|++|+|||||+++|+...-. .. | ....|+......+.+ ++..+.+|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVD------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHH-------
Confidence 699999999999999432111 00 0 011122222233444 778999999999832
Q ss_pred HHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 380 AAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 380 e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
....+...+..+|++++|+|++..........+.. +. ..++|+++|+||+|+..
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~-~~---~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQ-AE---KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHH-HH---HcCCCEEEEEECCCCCC
Confidence 22334556778999999999998766555444332 22 24689999999999753
No 267
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.16 E-value=5.4e-10 Score=114.07 Aligned_cols=122 Identities=21% Similarity=0.309 Sum_probs=73.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccc--------cccc--CCeeEEEEEeCC--eeEEEeecccccccchh----
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRL--------FATL--DPTTRRVQMKNG--GEFLLTDTVGFIQKLPT---- 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~--------~~Tl--d~ttr~i~l~~g--~~i~LiDTpG~i~~lp~---- 376 (536)
++|+++|.+|+|||||+|+|++..+...... ..|. ......+. .+| ..+.+||||||.+....
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~-~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIE-ENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEE-ECCEEEEEEEEecCCccccccchhhH
Confidence 4799999999999999999998866533211 1111 11112222 245 36889999999654321
Q ss_pred -hH----HHHHHHhHHH---------H--HhccceEEEEeCCC-cchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 377 -TL----VAAFRATLEE---------I--SESSLLVHVVDISH-PLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 377 -~l----~e~f~~tl~e---------i--~~aDliLlVvD~s~-~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
.+ ...|...+.+ + ..+|+++++++.+. .....+.+.+.. +.. .+|+|+|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~----l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKR----LSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHH----Hhc-cCCEEEEEECCCcCCH
Confidence 11 1122222211 1 14688999999874 444555544433 322 6899999999999764
Q ss_pred h
Q 009371 440 P 440 (536)
Q Consensus 440 ~ 440 (536)
.
T Consensus 159 ~ 159 (276)
T cd01850 159 E 159 (276)
T ss_pred H
Confidence 3
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.16 E-value=3.1e-10 Score=100.95 Aligned_cols=138 Identities=21% Similarity=0.280 Sum_probs=93.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.++++||..|+|||||++.|.|... +...+..+.+.+.. .+||||-+-.. ...+.+.+-....+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~---------lykKTQAve~~d~~---~IDTPGEy~~~----~~~Y~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT---------LYKKTQAVEFNDKG---DIDTPGEYFEH----PRWYHALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh---------hhcccceeeccCcc---ccCCchhhhhh----hHHHHHHHHHhhcc
Confidence 3589999999999999999998743 33455666663322 48999963211 12233444456789
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH--HH--HhccCCCEEEEeccCCCCHHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV--KL--EAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~--~~--~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
|++++|-.+.++.+.-.- .......+|+|-|++|+|+.++.+.. +. ......++|.+|+.++.|+++|+
T Consensus 66 dvi~~v~~and~~s~f~p-------~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 66 DVIIYVHAANDPESRFPP-------GFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELV 138 (148)
T ss_pred ceeeeeecccCccccCCc-------ccccccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence 999999988876432110 11123467899999999999643211 11 12235689999999999999999
Q ss_pred HHHHH
Q 009371 469 SAVQE 473 (536)
Q Consensus 469 ~~I~~ 473 (536)
+.+..
T Consensus 139 ~~L~~ 143 (148)
T COG4917 139 DYLAS 143 (148)
T ss_pred HHHHh
Confidence 98864
No 269
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.14 E-value=3e-10 Score=119.99 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=107.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcc-cc-----cc----------ccccccCCeeEEEEEeCCeeEEEeecccccccch
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATV-LA-----ED----------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~-~~-----~~----------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp 375 (536)
+..|||+-+...|||||+..|+...- +. .. ..+.|+-.....+. +++..++++||||+-+..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFG- 82 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFG- 82 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCcc-
Confidence 45699999999999999999986421 00 00 11112111222233 488999999999994422
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------HHHH---
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------VKLE--- 446 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------~~~~--- 446 (536)
.+++. -+...|.+++++|+..+..++..-.+.+.|+. +.+-|+|+||+|....... +.+.
T Consensus 83 -GEVER------vl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L 151 (603)
T COG1217 83 -GEVER------VLSMVDGVLLLVDASEGPMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVEL 151 (603)
T ss_pred -chhhh------hhhhcceEEEEEEcccCCCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Confidence 22222 24668999999999999888887777777765 6677999999999875321 1111
Q ss_pred ----hccCCCEEEEeccCC----------CCHHHHHHHHHHHhcccc
Q 009371 447 ----AQKREDVVCISALSG----------NGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 447 ----~~~~~~~v~vSAktg----------~GIdeL~~~I~~~l~~~~ 479 (536)
...+.|+++.||+.| .++.-||+.|.+++....
T Consensus 152 ~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 152 GATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 124579999999998 368899999999987543
No 270
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.2e-10 Score=120.08 Aligned_cols=142 Identities=23% Similarity=0.228 Sum_probs=92.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc-----------------c--------------cccccccccCCeeEEEEEeCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV-----------------L--------------AEDRLFATLDPTTRRVQMKNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~-----------------~--------------~~~~~~~Tld~ttr~i~l~~g~~ 361 (536)
-.++++|+..+|||||+-+|+-.-- . .+...+.|++.....+.. +...
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k~~ 86 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DKYN 86 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CCce
Confidence 4689999999999999999863200 0 011112233333333333 4457
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-------hHHHHHHHHHHHhhcCCCCCCEEEEEEcC
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-------AEQQIEAVDKVLSELDVSSIPKLMIWNKV 434 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-------~~~~~~~v~~vL~~l~~~~~piIvVlNKi 434 (536)
+.++|+||+ ..++..++..+..||+.++|+|++.+. ..+..+.+ -+...+|. ..+|+++||+
T Consensus 87 ~tIiDaPGH--------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi--~~lIVavNKM 155 (428)
T COG5256 87 FTIIDAPGH--------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI--KQLIVAVNKM 155 (428)
T ss_pred EEEeeCCch--------HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC--ceEEEEEEcc
Confidence 899999997 456677788889999999999998873 22333322 23444553 3578999999
Q ss_pred CCCCChh-HHHHH-------h---c---cCCCEEEEeccCCCCHHH
Q 009371 435 DKVCDPQ-KVKLE-------A---Q---KREDVVCISALSGNGLDE 466 (536)
Q Consensus 435 Dl~~~~~-~~~~~-------~---~---~~~~~v~vSAktg~GIde 466 (536)
|+.+-++ ++... . . ...+++||||.+|+|+-+
T Consensus 156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 9986322 22111 0 0 135799999999999854
No 271
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.14 E-value=3.5e-10 Score=105.45 Aligned_cols=113 Identities=27% Similarity=0.352 Sum_probs=71.8
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeE-------------EEEE-------------------------
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTR-------------RVQM------------------------- 356 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr-------------~i~l------------------------- 356 (536)
|+++|..+||||||+|+|+|......+....|..++.- ...+
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999865433322222211110 0000
Q ss_pred -----------------eCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhh
Q 009371 357 -----------------KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSE 419 (536)
Q Consensus 357 -----------------~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~ 419 (536)
.....+.|+||||+.+...... ..+.+.+..+|++++|+++.+.....+...+.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~----~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~ 156 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT----EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP 156 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS----HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH----HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC
Confidence 0113578999999955222111 2344556889999999999998776666665555544
Q ss_pred cCCCCCCEEEEEEcC
Q 009371 420 LDVSSIPKLMIWNKV 434 (536)
Q Consensus 420 l~~~~~piIvVlNKi 434 (536)
....+++|+||+
T Consensus 157 ---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 157 ---DKSRTIFVLNKA 168 (168)
T ss_dssp ---TCSSEEEEEE-G
T ss_pred ---CCCeEEEEEcCC
Confidence 345699999995
No 272
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.14 E-value=1e-09 Score=115.80 Aligned_cols=164 Identities=22% Similarity=0.264 Sum_probs=96.8
Q ss_pred EEEEEccCCCChHHHHHhhhCC----ccc------------cccccc---cccCCee---EEEEEeCC----eeEEEeec
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA----TVL------------AEDRLF---ATLDPTT---RRVQMKNG----GEFLLTDT 367 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~----~~~------------~~~~~~---~Tld~tt---r~i~l~~g----~~i~LiDT 367 (536)
-|+++|+.|+|||||+|++++. +.. +++..+ +|.+|.. ..+.+.-. .++.++||
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEEC
Confidence 5899999999999999999987 332 122233 5556654 44444222 57899999
Q ss_pred ccccccchhhH--HHH--------------HH-----HhHHHHH-hccceEEEE-eCCCcc--hHHHHHHHHHHHhhcCC
Q 009371 368 VGFIQKLPTTL--VAA--------------FR-----ATLEEIS-ESSLLVHVV-DISHPL--AEQQIEAVDKVLSELDV 422 (536)
Q Consensus 368 pG~i~~lp~~l--~e~--------------f~-----~tl~ei~-~aDliLlVv-D~s~~~--~~~~~~~v~~vL~~l~~ 422 (536)
+|+........ .+. |. -|..-+. .+|+.++|. |.+-.. ...-.+.=.+++.++..
T Consensus 99 vG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~ 178 (492)
T TIGR02836 99 VGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE 178 (492)
T ss_pred CCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh
Confidence 99964322111 000 11 1555566 799999998 775110 00111111334555555
Q ss_pred CCCCEEEEEEcCCCC-CChhHH--HHHhccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 423 SSIPKLMIWNKVDKV-CDPQKV--KLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 423 ~~~piIvVlNKiDl~-~~~~~~--~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
.++|+++|+||+|-. +....+ ........|++++|+..= .-+++...+.+.|.+-
T Consensus 179 ~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l-~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 179 LNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESM-RESDILSVLEEVLYEF 236 (492)
T ss_pred cCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHc-CHHHHHHHHHHHHhcC
Confidence 689999999999943 332222 122233578899998743 3455555555555443
No 273
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.13 E-value=8.4e-10 Score=113.87 Aligned_cols=99 Identities=22% Similarity=0.285 Sum_probs=64.0
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
|.+++|+||+|.... . ...+..+|.++++.+.... .++..+..-+ .++|.++|+||+|+..
T Consensus 126 g~D~viidT~G~~~~----e-------~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 126 GYDVIIVETVGVGQS----E-------VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEG 186 (300)
T ss_pred CCCEEEEeCCCCchh----h-------hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccc
Confidence 568899999997311 1 1224567888887543322 2322222212 3578899999999986
Q ss_pred ChhHH----------HHH-h---ccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 439 DPQKV----------KLE-A---QKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 439 ~~~~~----------~~~-~---~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
..... ... . ....+++++||++|.|+++|+++|.+.+.
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 53210 000 0 12246999999999999999999998755
No 274
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.12 E-value=9.6e-10 Score=107.80 Aligned_cols=164 Identities=15% Similarity=0.201 Sum_probs=96.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccc--ccccCCeeEEEEEeCCeeEEEeecccccccch--hhHHHHHHHhHH-H
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRL--FATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP--TTLVAAFRATLE-E 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~--~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp--~~l~e~f~~tl~-e 388 (536)
+|+++|.+||||||++|.|+|...+..... ..|......... .+|..+.++||||+.+... ......+...+. .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~-~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE-VDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE-ETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee-ecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 589999999999999999999877543321 123333344443 4899999999999965322 122222322222 2
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCC-CCCCEEEEEEcCCCCCChhH---HH--------HHh-ccCCCEEE
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDV-SSIPKLMIWNKVDKVCDPQK---VK--------LEA-QKREDVVC 455 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~-~~~piIvVlNKiDl~~~~~~---~~--------~~~-~~~~~~v~ 455 (536)
....+++|+|+... ..+..+...+..+...+|. .-..+|+|++..|....... +. ... .-...+..
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~ 159 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHV 159 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEE
Confidence 34578999999988 6677777777766666663 22468999999997665321 11 111 11233444
Q ss_pred Eecc------CCCCHHHHHHHHHHHhcccc
Q 009371 456 ISAL------SGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 456 vSAk------tg~GIdeL~~~I~~~l~~~~ 479 (536)
++.+ ....+.+|++.|.+.+....
T Consensus 160 f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 160 FNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 4444 22356777777777666543
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.11 E-value=1.6e-09 Score=111.48 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=76.7
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccc-cccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAE-DRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~-~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
+..+|+++|.+|+||||++|+|+|..+... .....+..++..... .+|..+.++||||+.+... ..+.....+..+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~--~~e~~~~~ik~~ 113 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGY--INDQAVNIIKRF 113 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE-ECCeEEEEEECCCCCchHH--HHHHHHHHHHHH
Confidence 345799999999999999999999875422 222222333333333 3788999999999965321 111111222111
Q ss_pred ---HhccceEEEEeCCC-cchHHHHHHHHHHHhhcCC-CCCCEEEEEEcCCCCC
Q 009371 390 ---SESSLLVHVVDISH-PLAEQQIEAVDKVLSELDV-SSIPKLMIWNKVDKVC 438 (536)
Q Consensus 390 ---~~aDliLlVvD~s~-~~~~~~~~~v~~vL~~l~~-~~~piIvVlNKiDl~~ 438 (536)
...|++++|..... .....+...+..+...+|. .-.++|+|+|++|..+
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 25899999955432 2344445555555544442 1257999999999874
No 276
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.10 E-value=7.5e-10 Score=129.55 Aligned_cols=138 Identities=25% Similarity=0.272 Sum_probs=90.2
Q ss_pred ChHHHHHhhhCCccccccccccccCCeeEEEEEeCC-----------------eeEEEeecccccccchhhHHHHHHH-h
Q 009371 324 GKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG-----------------GEFLLTDTVGFIQKLPTTLVAAFRA-T 385 (536)
Q Consensus 324 GKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g-----------------~~i~LiDTpG~i~~lp~~l~e~f~~-t 385 (536)
+||||+.+|.+.++.....-+.|.......+.+..+ ..+.||||||+ +.|.. .
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh---------e~F~~lr 543 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH---------EAFTSLR 543 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc---------HHHHHHH
Confidence 499999999998876544444444433333332111 13789999997 33332 1
Q ss_pred HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----------------H-HHH---
Q 009371 386 LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----------------K-VKL--- 445 (536)
Q Consensus 386 l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----------------~-~~~--- 445 (536)
...+..+|++++|+|++++...+..+.+. .+.. .++|+++|+||+|+.+... . ...
T Consensus 544 ~~g~~~aDivlLVVDa~~Gi~~qT~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 544 KRGGSLADLAVLVVDINEGFKPQTIEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred HhhcccCCEEEEEEECcccCCHhHHHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 22346689999999999876666655544 3333 3689999999999964210 0 000
Q ss_pred ---------H--------------hccCCCEEEEeccCCCCHHHHHHHHHHH
Q 009371 446 ---------E--------------AQKREDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 446 ---------~--------------~~~~~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
. .....++|+|||++|+||++|+.+|...
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0 0123589999999999999999988643
No 277
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.5e-09 Score=122.84 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=116.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCC---ccccccc---------------cccccCCeeEEEEEeCC-eeEEEeecccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGA---TVLAEDR---------------LFATLDPTTRRVQMKNG-GEFLLTDTVGFIQ 372 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~---~~~~~~~---------------~~~Tld~ttr~i~l~~g-~~i~LiDTpG~i~ 372 (536)
...|+|+|+..+|||||..+|+-. .....+. .+.|+......+. +.+ ..++++||||+++
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~-~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLF-WKGDYRINLIDTPGHVD 88 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEE-EcCceEEEEeCCCCccc
Confidence 456999999999999999998632 1111110 0112222222333 465 8999999999954
Q ss_pred cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCC
Q 009371 373 KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKRED 452 (536)
Q Consensus 373 ~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~ 452 (536)
. .......++.+|+++.|+|+..+...+....|....+ .++|.++++||+|..
T Consensus 89 F--------t~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~--------------- 141 (697)
T COG0480 89 F--------TIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL--------------- 141 (697)
T ss_pred c--------HHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc---------------
Confidence 2 3344456788999999999999887766555554444 489999999999954
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEccCceEEEEEcCHHHHHHHHHHHH
Q 009371 453 VVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTENGTLVKAHVPLRFARLLTPMRQ 532 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~~g~~~~~~lp~~~~~~~~~~~~ 532 (536)
+.++....+.+.+.+......++ +|....+.+..+.+......+.|......-...+|....+...+++.
T Consensus 142 --------~a~~~~~~~~l~~~l~~~~~~v~--~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~ 211 (697)
T COG0480 142 --------GADFYLVVEQLKERLGANPVPVQ--LPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEARE 211 (697)
T ss_pred --------ccChhhhHHHHHHHhCCCceeee--ccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHH
Confidence 55677777777777777554444 45444333333333344445556542222226788776666656654
Q ss_pred hh
Q 009371 533 MC 534 (536)
Q Consensus 533 ~l 534 (536)
.+
T Consensus 212 ~~ 213 (697)
T COG0480 212 KL 213 (697)
T ss_pred HH
Confidence 43
No 278
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.08 E-value=4.3e-10 Score=112.06 Aligned_cols=162 Identities=24% Similarity=0.387 Sum_probs=96.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccc-ccccccCCeeEEEEE----------------------eCC----------
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAED-RLFATLDPTTRRVQM----------------------KNG---------- 359 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~-~~~~Tld~ttr~i~l----------------------~~g---------- 359 (536)
+.|.++|..|+||||++.+|...-..... .....+||..+.+.+ ++|
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~ 99 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFA 99 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHH
Confidence 46899999999999999999754221111 112234443332221 111
Q ss_pred ----------------eeEEEeecccccccc-----hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHH-HHHHHHHH
Q 009371 360 ----------------GEFLLTDTVGFIQKL-----PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQ-IEAVDKVL 417 (536)
Q Consensus 360 ----------------~~i~LiDTpG~i~~l-----p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~-~~~v~~vL 417 (536)
.++.++||||+|.-. .....+.+.+ ...-++++|+|......... +.......
T Consensus 100 tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~las-----s~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 100 TKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLAS-----SFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhh-----cCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 247899999997521 1222233322 22457889999754332211 11112223
Q ss_pred hhcCCCCCCEEEEEEcCCCCCChh---------HHHHHh----------------------ccCCCEEEEeccCCCCHHH
Q 009371 418 SELDVSSIPKLMIWNKVDKVCDPQ---------KVKLEA----------------------QKREDVVCISALSGNGLDE 466 (536)
Q Consensus 418 ~~l~~~~~piIvVlNKiDl~~~~~---------~~~~~~----------------------~~~~~~v~vSAktg~GIde 466 (536)
..+-....|.|+|+||+|+.+..- .+.... ......+.+||.+|.|+++
T Consensus 175 Silyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 175 SILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred HHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 333335789999999999987521 111100 1235689999999999999
Q ss_pred HHHHHHHHhcccc
Q 009371 467 FCSAVQEKLKDSM 479 (536)
Q Consensus 467 L~~~I~~~l~~~~ 479 (536)
++.++.+.+.+..
T Consensus 255 f~~av~~~vdEy~ 267 (366)
T KOG1532|consen 255 FFTAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876543
No 279
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=6.1e-10 Score=113.10 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=101.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc---ccccccccc-----CCeeEE---------EEE-----eCC------eeEEE
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATL-----DPTTRR---------VQM-----KNG------GEFLL 364 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tl-----d~ttr~---------i~l-----~~g------~~i~L 364 (536)
..|+++|+...|||||..+|+|.-.. .+-+...|+ +...+. +.. ..| +.+.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 36899999999999999999984110 000000000 000000 000 011 35679
Q ss_pred eecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH
Q 009371 365 TDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK 444 (536)
Q Consensus 365 iDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~ 444 (536)
+|.||+ .-.+..+++...-.|..++|+.++.+..+.|...-.-+|..++. +.+|+|-||+|++..+....
T Consensus 91 VDaPGH--------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi--k~iiIvQNKIDlV~~E~AlE 160 (415)
T COG5257 91 VDAPGH--------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI--KNIIIVQNKIDLVSRERALE 160 (415)
T ss_pred eeCCch--------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc--ceEEEEecccceecHHHHHH
Confidence 999998 12234456666778999999999887543332222334566654 46899999999998654332
Q ss_pred HHh----------ccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 445 LEA----------QKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 445 ~~~----------~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
.+. ..+.|++++||..+.|||.|+++|.+.+...
T Consensus 161 ~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 161 NYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 211 2457999999999999999999999998754
No 280
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=1.3e-10 Score=108.85 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=107.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
.+++|+|..++||||++.+.|..-+...+.-....+...+.+.+. ......+|||+|. +.|.. +-.+++
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq---------eEfDaItkAyyr 91 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ---------EEFDAITKAYYR 91 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccc---------hhHHHHHHHHhc
Confidence 468999999999999999999664443333334455555555541 2335669999998 33433 456678
Q ss_pred hccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.|...++|+.-++..+.+....| .++.++ ...+|.++|-||+|++++.. ...+........+.+|++...|+
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred cccceEEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 89999999988886554433333 333333 34799999999999987542 22223334567889999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
..+|.+|.+.+..
T Consensus 170 ~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 281
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.05 E-value=1e-09 Score=106.99 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=38.5
Q ss_pred CCCEEEEEEcCCCCCChh----HHHH---HhccCCCEEEEeccCCCCHHHHHHHHHHHh
Q 009371 424 SIPKLMIWNKVDKVCDPQ----KVKL---EAQKREDVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 424 ~~piIvVlNKiDl~~~~~----~~~~---~~~~~~~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
..|.++|+||+|+..... .... ......+++++||++|.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999975321 1111 112347899999999999999999998753
No 282
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.05 E-value=1.2e-09 Score=111.52 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=38.4
Q ss_pred CCCEEEEEEcCCCCCChh--H--H-HH--HhccCCCEEEEeccCCCCHHHHHHHHHHH
Q 009371 424 SIPKLMIWNKVDKVCDPQ--K--V-KL--EAQKREDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 424 ~~piIvVlNKiDl~~~~~--~--~-~~--~~~~~~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
..+.++|+||+|+.+... . . .. ......+++++||++|+|+++|.+||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456799999999986321 1 1 11 12346789999999999999999999874
No 283
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.04 E-value=2.5e-09 Score=122.85 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=73.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccc----------------cccccCCeeEEEEE--e-CCeeEEEeeccccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDR----------------LFATLDPTTRRVQM--K-NGGEFLLTDTVGFIQK 373 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~----------------~~~Tld~ttr~i~l--~-~g~~i~LiDTpG~i~~ 373 (536)
..|+++|+.++|||||+.+|+...-.+... ...|+......+.+ . ++..++++||||+.+
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d- 99 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD- 99 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC-
Confidence 469999999999999999997421111000 01122222222222 1 356789999999843
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
+...+...+..+|++++|+|+..+...+....+..+.+. +.|.|+++||+|+.
T Consensus 100 -------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 -------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred -------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc----CCCeEEEEECchhh
Confidence 123445567889999999999887766555555443332 56889999999986
No 284
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.04 E-value=4.3e-10 Score=107.62 Aligned_cols=118 Identities=23% Similarity=0.332 Sum_probs=66.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE--eCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM--KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l--~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
+.|.|+|+.|||||+|+..|....... -++.+.+. ....+ ..+..+.++|+||+-+-. .. +...+....
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~---T~tS~e~n-~~~~~~~~~~~~~~lvD~PGH~rlr-~~----~~~~~~~~~ 74 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP---TVTSMENN-IAYNVNNSKGKKLRLVDIPGHPRLR-SK----LLDELKYLS 74 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEE-EECCGSSTCGTCECEEEETT-HCCC-HH----HHHHHHHHG
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC---eeccccCC-ceEEeecCCCCEEEEEECCCcHHHH-HH----HHHhhhchh
Confidence 579999999999999999998652210 11112111 11111 245688999999994321 11 222222467
Q ss_pred hccceEEEEeCCCcc--hHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCC
Q 009371 391 ESSLLVHVVDISHPL--AEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 391 ~aDliLlVvD~s~~~--~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~ 439 (536)
.+.+||||+|++... ..+..+.+..+|.... ....|++++.||.|+...
T Consensus 75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 799999999997522 1223334444544432 356899999999998653
No 285
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.03 E-value=1.2e-09 Score=127.04 Aligned_cols=114 Identities=21% Similarity=0.204 Sum_probs=77.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccc----------------cccccCCeeEEEEEe---------------CCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDR----------------LFATLDPTTRRVQMK---------------NGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~----------------~~~Tld~ttr~i~l~---------------~g~ 360 (536)
+..|+|+|+.++|||||+++|+...-.+... ...|+....-.+.+. ++.
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 4479999999999999999997532111000 011122111222221 255
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.++++||||+ .++...+...+..+|++++|+|+..+...++...+..++. .++|+|+++||+|+.
T Consensus 99 ~inliDtPGh--------~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 99 LINLIDSPGH--------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEEECCCCH--------HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 7889999999 3445556677789999999999999877666555554443 378999999999987
No 286
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.6e-09 Score=117.62 Aligned_cols=158 Identities=25% Similarity=0.385 Sum_probs=104.4
Q ss_pred CCCCCEEEEEccCCCChHHHHHhhhCCcccccccc------ccccCCee------EEEEE-----eCCeeEEEeeccccc
Q 009371 309 SVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRL------FATLDPTT------RRVQM-----KNGGEFLLTDTVGFI 371 (536)
Q Consensus 309 ~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~------~~Tld~tt------r~i~l-----~~g~~i~LiDTpG~i 371 (536)
...-|.|+|+|+..+|||-|+..|.+.++..+... ++|.-|.. ..+.- ..-..+++|||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh- 550 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH- 550 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc-
Confidence 33457899999999999999999998776533322 22222211 00000 01124789999997
Q ss_pred ccchhhHHHHHHHhH-HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh------h---
Q 009371 372 QKLPTTLVAAFRATL-EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP------Q--- 441 (536)
Q Consensus 372 ~~lp~~l~e~f~~tl-~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~------~--- 441 (536)
++|.... .....||++|+|+|+.++...+.++.+.. +...+.|+|+.+||+|.+-.. .
T Consensus 551 --------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~rktpFivALNKiDRLYgwk~~p~~~i~~ 618 (1064)
T KOG1144|consen 551 --------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRMRKTPFIVALNKIDRLYGWKSCPNAPIVE 618 (1064)
T ss_pred --------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHH----HHhcCCCeEEeehhhhhhcccccCCCchHHH
Confidence 3443221 23456999999999999988777776543 233478999999999986421 0
Q ss_pred ---------------HHHH----Hhc---------------cCCCEEEEeccCCCCHHHHHHHHHHHhcccc
Q 009371 442 ---------------KVKL----EAQ---------------KREDVVCISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 442 ---------------~~~~----~~~---------------~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
++.. ... ....++|+||.+|+||-+|+.+|.+.-...+
T Consensus 619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0000 000 1135789999999999999999998776654
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=99.02 E-value=1.4e-09 Score=126.43 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=75.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccc-c---------------cccccCCeeEEEEEe---------CCeeEEEeec
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAED-R---------------LFATLDPTTRRVQMK---------NGGEFLLTDT 367 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~-~---------------~~~Tld~ttr~i~l~---------~g~~i~LiDT 367 (536)
..|+|+|+.++|||||+++|+...-.+.. . ...|+....-.+.+. .+..++++||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 46999999999999999999863211100 0 011122111122231 1456899999
Q ss_pred ccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 368 VGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 368 pG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
||+. +....+...+..+|++++|+|+..+...+....+..+.. .++|+|+|+||+|+.
T Consensus 100 PG~~--------~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGHV--------DFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred CCHH--------hHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9983 333445666788999999999999877666555444333 368999999999987
No 288
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.4e-09 Score=101.15 Aligned_cols=148 Identities=23% Similarity=0.324 Sum_probs=103.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
++.++|--|||||||++.|-.... ++...|+.||+..+.+ .|..++.+|..|+ ..+-+....++..+|
T Consensus 22 KllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPTSE~l~I-g~m~ftt~DLGGH--------~qArr~wkdyf~~v~ 89 (193)
T KOG0077|consen 22 KLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSEELSI-GGMTFTTFDLGGH--------LQARRVWKDYFPQVD 89 (193)
T ss_pred eEEEEeecCCchhhHHHHHccccc---cccCCCcCCChHHhee-cCceEEEEccccH--------HHHHHHHHHHHhhhc
Confidence 699999999999999999976543 2345688899988887 8899999999998 233333456678899
Q ss_pred ceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHh-------c-----------cCCC
Q 009371 394 LLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEA-------Q-----------KRED 452 (536)
Q Consensus 394 liLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~-------~-----------~~~~ 452 (536)
.+++.+|+.+... .+....++.++..-...+.|+++.+||+|...... ...... . ....
T Consensus 90 ~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~e 169 (193)
T KOG0077|consen 90 AIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLE 169 (193)
T ss_pred eeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEE
Confidence 9999999987643 34445555566555567899999999999876421 111100 0 0123
Q ss_pred EEEEeccCCCCHHHHHHHHHH
Q 009371 453 VVCISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~ 473 (536)
++.+|...+.|..+-+.|+..
T Consensus 170 vfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 170 VFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEEccCccceeeeehhh
Confidence 567787777776665555543
No 289
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.1e-09 Score=113.57 Aligned_cols=151 Identities=21% Similarity=0.265 Sum_probs=110.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc---cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.|+..|+--.|||||+.+++|..-. ...+.+.|.|-........++ .+.|+|.||+ .+.+..++..+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~-~~~fIDvpgh--------~~~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG-VMGFIDVPGH--------PDFISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC-ceEEeeCCCc--------HHHHHHHHhhhc
Confidence 4788999999999999999986432 233344555555554444344 7789999999 455666777788
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-------HHHhccCCCEEEEeccCCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-------KLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-------~~~~~~~~~~v~vSAktg~G 463 (536)
..|.+++|||+.++...+..+.+ .+|..++. ...++|+||+|+.++.... ........+++.+|+++|+|
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL-~iLdllgi--~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G 149 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHL-LILDLLGI--KNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRG 149 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHH-HHHHhcCC--CceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCC
Confidence 89999999999888877766653 35666553 2359999999998753211 11112346789999999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
|++|.+.|.+...
T Consensus 150 I~~Lk~~l~~L~~ 162 (447)
T COG3276 150 IEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999884
No 290
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=7.5e-09 Score=93.82 Aligned_cols=150 Identities=22% Similarity=0.225 Sum_probs=106.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhH-HHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATL-EEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl-~ei~~a 392 (536)
.+..+|-.+|||||++-.|.-... .....|.......+.+ .+..+++||..|. ..++... .++...
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~---~~~ipTvGFnvetVty-kN~kfNvwdvGGq---------d~iRplWrhYy~gt 85 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQS---VTTIPTVGFNVETVTY-KNVKFNVWDVGGQ---------DKIRPLWRHYYTGT 85 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCC---cccccccceeEEEEEe-eeeEEeeeeccCc---------hhhhHHHHhhccCC
Confidence 589999999999999999874322 1223344455566766 6788999999997 2223222 234567
Q ss_pred cceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--HHH------HhccCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--VKL------EAQKREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~~~------~~~~~~~~v~vSAktg~G 463 (536)
.++|+|+|+++... ++....+.+++..-.+.+.|+++..||-|+.+.... +.. ......-+.+.||.+|.|
T Consensus 86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdg 165 (180)
T KOG0071|consen 86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDG 165 (180)
T ss_pred ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchh
Confidence 88999999877643 455666777777777778999999999999875321 111 111223467899999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
+.+=+.||...+.
T Consensus 166 L~eglswlsnn~~ 178 (180)
T KOG0071|consen 166 LKEGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999877654
No 291
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.95 E-value=3.3e-09 Score=121.65 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=73.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccc----------cc------ccccccCCeeEE--EEE-eCCeeEEEeecccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLA----------ED------RLFATLDPTTRR--VQM-KNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~----------~~------~~~~Tld~ttr~--i~l-~~g~~i~LiDTpG~i~ 372 (536)
+..|+++|+.|+|||||+++|+...-.+ .+ ....|+...... +.+ +++..+.++||||+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 3469999999999999999996321000 00 011222222111 111 3566899999999843
Q ss_pred cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 373 KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 373 ~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
. ...+...+..+|++++|+|+..+...+....+..+.. .+.|.++|+||+|...
T Consensus 99 f--------~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 F--------GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred c--------HHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 1 1234556788999999999988765555444433322 3678899999999864
No 292
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.94 E-value=2e-09 Score=103.93 Aligned_cols=151 Identities=20% Similarity=0.274 Sum_probs=101.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCee--EEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGE--FLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~--i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
++++||..++|||+|+-..+...+. .++..+-.+.....+...+|.. +.+|||+|.-+. +.++ -+ .+..
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~fp-~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY------DrlR-pl-sY~~ 76 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNAFP-EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY------DRLR-PL-SYPQ 76 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCcCc-ccccCeEEccceEEEEecCCCEEEEeeeecCCCccc------cccc-cc-CCCC
Confidence 6899999999999999998866443 3333333455556666634664 459999998332 1111 11 4578
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHHHHHh------------------ccCC
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKVKLEA------------------QKRE 451 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~~~~~------------------~~~~ 451 (536)
+|+++++++..++.+.+... .+|+.++. ..+.|+|+|++|.||.++........ ....
T Consensus 77 tdvfl~cfsv~~p~S~~nv~--~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~ 154 (198)
T KOG0393|consen 77 TDVFLLCFSVVSPESFENVK--SKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAV 154 (198)
T ss_pred CCEEEEEEEcCChhhHHHHH--hhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcc
Confidence 89999999998887655432 23343332 36799999999999986432211111 1225
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHh
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
.++++||++..|+.++|+......
T Consensus 155 ~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 155 KYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred eeeeehhhhhCCcHHHHHHHHHHH
Confidence 689999999999999988765544
No 293
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=8.1e-09 Score=105.73 Aligned_cols=154 Identities=21% Similarity=0.306 Sum_probs=98.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc--cc-----ccccccccCCeeEEEE------EeCCe--eEEEeecccccccchhh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV--LA-----EDRLFATLDPTTRRVQ------MKNGG--EFLLTDTVGFIQKLPTT 377 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~--~~-----~~~~~~Tld~ttr~i~------l~~g~--~i~LiDTpG~i~~lp~~ 377 (536)
..++++|+..+|||||.++|..... +- +.....|+|-....+. ++.|. ++.++|+||+
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH------- 80 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH------- 80 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-------
Confidence 3689999999999999999975321 11 1111223332211121 12333 5689999998
Q ss_pred HHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---HH--------
Q 009371 378 LVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---LE-------- 446 (536)
Q Consensus 378 l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~~-------- 446 (536)
...++..+....-.|+.++|+|+..+...+..+.+ ++.++ .-...++|+||+|..++..+.. ..
T Consensus 81 -asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 81 -ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred -HHHHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 22344455555667999999999877554443322 23332 2356899999999987643211 10
Q ss_pred ----hccCCCEEEEeccCC----CCHHHHHHHHHHHhccc
Q 009371 447 ----AQKREDVVCISALSG----NGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 447 ----~~~~~~~v~vSAktg----~GIdeL~~~I~~~l~~~ 478 (536)
...+.|++++||+.| ++|.+|.+.|...+...
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 013479999999999 89999999999887654
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.90 E-value=3.5e-09 Score=105.90 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=54.5
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHH--hccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEIS--ESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~--~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+.++||||+++--.+. ......++.+. ..-++++++|+......... ..+...+...-..+.|.|.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~--~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHS--DSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHS--HHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEec--hhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 68999999995421111 11111122222 23468899998754432221 111111111101268999999999998
Q ss_pred CChh-----------HHH--------H-------Hh--ccCC-CEEEEeccCCCCHHHHHHHHHHHh
Q 009371 438 CDPQ-----------KVK--------L-------EA--QKRE-DVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 438 ~~~~-----------~~~--------~-------~~--~~~~-~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
+... ... . .. .... .++++|+++++|+++|+..|.+.+
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 7210 000 0 00 0123 799999999999999999998765
No 295
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.90 E-value=1.3e-08 Score=101.29 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=95.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHH-HHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLE-EISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~-ei~~ 391 (536)
+|.++|+.||||||+.+.+.+.-.+ ..-++.+|.+.+...+...+...+.+||.||+...... .+....+ -++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~----~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN----YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT----THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc----cccccHHHHHhc
Confidence 4899999999999999999865332 23345567777777776656779999999999543221 1111111 2477
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHHHH-----------HhccC---CCEEE
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKVKL-----------EAQKR---EDVVC 455 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~~~-----------~~~~~---~~~v~ 455 (536)
++++|||+|+......+++..+...+..+. ..+..+-+.++|+|+..+..+... ..... ..++.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 899999999985556666666665555432 246788999999999875432111 11112 56788
Q ss_pred EeccCCCCHHHHHHHHHHHhc
Q 009371 456 ISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 456 vSAktg~GIdeL~~~I~~~l~ 476 (536)
+|..+. .+-+.+..|...+-
T Consensus 157 TSI~D~-Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 157 TSIWDE-SLYEAWSKIVQKLI 176 (232)
T ss_dssp E-TTST-HHHHHHHHHHHTTS
T ss_pred ccCcCc-HHHHHHHHHHHHHc
Confidence 888874 56666666655543
No 296
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.89 E-value=2.9e-08 Score=104.76 Aligned_cols=177 Identities=12% Similarity=0.173 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCcccccccccc-ccCCeeEE--EEEeC
Q 009371 282 LRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFA-TLDPTTRR--VQMKN 358 (536)
Q Consensus 282 i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~-Tld~ttr~--i~l~~ 358 (536)
+..-...+++.|+.+...+ ..|||+|.+|+|||||||+|.|..-...+...+ ...+|... +..++
T Consensus 17 ~~~~~s~i~~~l~~~~~~~------------l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~ 84 (376)
T PF05049_consen 17 LQEVVSKIREALKDIDNAP------------LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK 84 (376)
T ss_dssp HHHHHHHHHHHHHHHHH--------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS
T ss_pred HHHHHHHHHHHHHHhhcCc------------eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC
Confidence 3444555555555553321 259999999999999999998753321111111 12222222 22344
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC-
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV- 437 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~- 437 (536)
-..+.+||.||...... .....+... .+...|.+|++.+ ......+...... +.. .++|+.+|.+|+|..
T Consensus 85 ~pnv~lWDlPG~gt~~f-~~~~Yl~~~--~~~~yD~fiii~s--~rf~~ndv~La~~-i~~---~gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 85 FPNVTLWDLPGIGTPNF-PPEEYLKEV--KFYRYDFFIIISS--ERFTENDVQLAKE-IQR---MGKKFYFVRTKVDSDL 155 (376)
T ss_dssp -TTEEEEEE--GGGSS---HHHHHHHT--TGGG-SEEEEEES--SS--HHHHHHHHH-HHH---TT-EEEEEE--HHHHH
T ss_pred CCCCeEEeCCCCCCCCC-CHHHHHHHc--cccccCEEEEEeC--CCCchhhHHHHHH-HHH---cCCcEEEEEecccccH
Confidence 45799999999843211 111222211 2466788777654 3444555544433 333 378999999999951
Q ss_pred C----------ChhH-H---HH-----Hh---ccCCCEEEEeccCC--CCHHHHHHHHHHHhcccc
Q 009371 438 C----------DPQK-V---KL-----EA---QKREDVVCISALSG--NGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 438 ~----------~~~~-~---~~-----~~---~~~~~~v~vSAktg--~GIdeL~~~I~~~l~~~~ 479 (536)
. ..+. + +. .. ...+++|.||+.+- .++..|.+.|.+.+....
T Consensus 156 ~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 156 YNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred hhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 0 0011 0 00 01 13467899999864 468889999998887654
No 297
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.89 E-value=1.4e-08 Score=102.96 Aligned_cols=101 Identities=25% Similarity=0.324 Sum_probs=65.2
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
|.+++|+.|+|..+. .. .-...+|.+++|.-...+... +.++. |+..+--|+|+||.|+..
T Consensus 143 G~DvIIVETVGvGQs----ev-------~I~~~aDt~~~v~~pg~GD~~---Q~iK~-----GimEiaDi~vINKaD~~~ 203 (323)
T COG1703 143 GYDVIIVETVGVGQS----EV-------DIANMADTFLVVMIPGAGDDL---QGIKA-----GIMEIADIIVINKADRKG 203 (323)
T ss_pred CCCEEEEEecCCCcc----hh-------HHhhhcceEEEEecCCCCcHH---HHHHh-----hhhhhhheeeEeccChhh
Confidence 467889999987331 11 113458888888765544332 22222 233445699999999654
Q ss_pred ChhHH-------HH------HhccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 439 DPQKV-------KL------EAQKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 439 ~~~~~-------~~------~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
..... .. ...+.+|++-+||.+|+|+++|+++|.++....
T Consensus 204 A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 204 AEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 42211 11 112457899999999999999999999987643
No 298
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.88 E-value=6.6e-09 Score=94.26 Aligned_cols=152 Identities=24% Similarity=0.246 Sum_probs=106.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
++.++|-.||||||+++.|.+.++. ....|-...+..+.+.+...+++||..|...-.| .+. .++.+.|
T Consensus 19 rilllGldnAGKTT~LKqL~sED~~---hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRp-----yWs---NYyenvd 87 (185)
T KOG0074|consen 19 RILLLGLDNAGKTTFLKQLKSEDPR---HLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRP-----YWS---NYYENVD 87 (185)
T ss_pred EEEEEecCCCcchhHHHHHccCChh---hccccCCcceEEEeecCcEEEEEEecCCccccch-----hhh---hhhhccc
Confidence 6999999999999999999987642 2334455566777774447899999999832211 121 2457799
Q ss_pred ceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--HHHH------hccCCCEEEEeccCCCCH
Q 009371 394 LLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--VKLE------AQKREDVVCISALSGNGL 464 (536)
Q Consensus 394 liLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~~~~------~~~~~~~v~vSAktg~GI 464 (536)
.++||+|+++... ++.-+.+-+++++.....+|+++..||.|++-.... .... ......+-.+||.+++|+
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence 9999999766533 333345556777777788999999999998754321 1111 112245678999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
.+-.+|+.....
T Consensus 168 ~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 168 TDGSDWVQSNPE 179 (185)
T ss_pred cCcchhhhcCCC
Confidence 988888876544
No 299
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.2e-08 Score=96.84 Aligned_cols=150 Identities=23% Similarity=0.332 Sum_probs=93.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH--
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS-- 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~-- 390 (536)
+.|.++|+.++|||+|+-.|...... .-++...+......+ +.....++|.||+.+ .-....+.+.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~---~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r--------lR~kl~e~~~~~ 106 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR---GTVTSIEPNEATYRL-GSENVTLVDLPGHSR--------LRRKLLEYLKHN 106 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc---CeeeeeccceeeEee-cCcceEEEeCCCcHH--------HHHHHHHHcccc
Confidence 46999999999999999998765221 123345555565555 444578999999822 1111223333
Q ss_pred -hccceEEEEeCCCcc--hHHHHHHHHHHHhhc--CCCCCCEEEEEEcCCCCCCh--hHHHH-----------Hhc----
Q 009371 391 -ESSLLVHVVDISHPL--AEQQIEAVDKVLSEL--DVSSIPKLMIWNKVDKVCDP--QKVKL-----------EAQ---- 448 (536)
Q Consensus 391 -~aDliLlVvD~s~~~--~~~~~~~v~~vL~~l--~~~~~piIvVlNKiDl~~~~--~~~~~-----------~~~---- 448 (536)
.+-.+++|+|+..-. ..+..+.+..++-.- .....|++++.||.|+.-.. +.++. ...
T Consensus 107 ~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~ 186 (238)
T KOG0090|consen 107 YSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRS 186 (238)
T ss_pred ccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 678899999986432 223333344444433 23457899999999986431 11100 000
Q ss_pred --------------------------cCCCEEEEeccCCCCHHHHHHHHHHHh
Q 009371 449 --------------------------KREDVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 449 --------------------------~~~~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
....+.+.|+++| +++++.+||.+.+
T Consensus 187 ~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 187 ISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0123678899988 8999999998754
No 300
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.86 E-value=5.2e-08 Score=89.62 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=109.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccccccc-CCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL-DPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl-d~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
-+|+++|.-++|||+++..|.-.+..++.....|+ |.....+..+.| ..+.+.||.|.-.. +..+... ++
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~eLprh------y~ 82 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQELPRH------YF 82 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hhhhhHh------Hh
Confidence 47999999999999999998754433332222232 222333433333 25779999998432 3333322 34
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcC-CCCCCEEEEEEcCCCCCChhHHHH-----HhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELD-VSSIPKLMIWNKVDKVCDPQKVKL-----EAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~-~~~~piIvVlNKiDl~~~~~~~~~-----~~~~~~~~v~vSAktg~G 463 (536)
.-+|..++|++..++.+.+..+.+..++.... ...+|++++.||+|+..+.+.... ........+.++|.+...
T Consensus 83 q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~s 162 (198)
T KOG3883|consen 83 QFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPS 162 (198)
T ss_pred ccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchh
Confidence 66899999999999888777777777776642 245799999999999765332211 122334678999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 009371 464 LDEFCSAVQEKLKDSM 479 (536)
Q Consensus 464 IdeL~~~I~~~l~~~~ 479 (536)
+-+.|..+...+....
T Consensus 163 L~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 163 LYEPFTYLASRLHQPQ 178 (198)
T ss_pred hhhHHHHHHHhccCCc
Confidence 9999999988876543
No 301
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.86 E-value=1.8e-08 Score=97.99 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=60.8
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
.+.++++|.|.. + ...+.. ..+|.++.|+|+.+...... .....+ ...-++|+||+|+.+.
T Consensus 92 ~D~iiIEt~G~~--l----~~~~~~-----~l~~~~i~vvD~~~~~~~~~-----~~~~qi---~~ad~~~~~k~d~~~~ 152 (199)
T TIGR00101 92 LEMVFIESGGDN--L----SATFSP-----ELADLTIFVIDVAAGDKIPR-----KGGPGI---TRSDLLVINKIDLAPM 152 (199)
T ss_pred CCEEEEECCCCC--c----ccccch-----hhhCcEEEEEEcchhhhhhh-----hhHhHh---hhccEEEEEhhhcccc
Confidence 466788888841 1 111111 12578999999987544211 011122 2234899999999853
Q ss_pred h----hHHH---HHhccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 440 P----QKVK---LEAQKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 440 ~----~~~~---~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
. +... .......+++++||++|+|+++++++|.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 153 VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 1 1111 11245678999999999999999999987653
No 302
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=8.3e-09 Score=111.95 Aligned_cols=144 Identities=26% Similarity=0.232 Sum_probs=90.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCc-----------------ccc--------------ccccccccCCeeEEEEEeCCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGAT-----------------VLA--------------EDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~-----------------~~~--------------~~~~~~Tld~ttr~i~l~~g~ 360 (536)
.-.++++|+.+||||||+-+|+-.- ... +...+.|.+..+..+. ....
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-s~~~ 255 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-SKSK 255 (603)
T ss_pred ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-cCce
Confidence 3478999999999999999986320 000 0001112222222222 2445
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHH------HHHHHHHHHhhcCCCCCCEEEEEEcC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQ------QIEAVDKVLSELDVSSIPKLMIWNKV 434 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~------~~~~v~~vL~~l~~~~~piIvVlNKi 434 (536)
.++|+|+||+- .+...++.....||+.++|+|++....+. +......++..+|.. ..|+++||+
T Consensus 256 ~~tliDaPGhk--------dFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~--qlivaiNKm 325 (603)
T KOG0458|consen 256 IVTLIDAPGHK--------DFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS--QLIVAINKM 325 (603)
T ss_pred eEEEecCCCcc--------ccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc--eEEEEeecc
Confidence 78899999973 23344556678899999999998764432 233345567777743 579999999
Q ss_pred CCCCChh-HHHHHh--------------ccCCCEEEEeccCCCCHHH
Q 009371 435 DKVCDPQ-KVKLEA--------------QKREDVVCISALSGNGLDE 466 (536)
Q Consensus 435 Dl~~~~~-~~~~~~--------------~~~~~~v~vSAktg~GIde 466 (536)
|+++-.+ ++.+.. .....++|||+.+|+|+-.
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 9987432 222111 1234799999999999743
No 303
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.86 E-value=3.1e-09 Score=106.20 Aligned_cols=100 Identities=26% Similarity=0.290 Sum_probs=59.2
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
|.+++|+.|+|..+ ... +-...+|.+++|+-...+..-+-++ .|+..+.-|+|+||+|+..
T Consensus 121 G~D~IiiETVGvGQ----sE~-------~I~~~aD~~v~v~~Pg~GD~iQ~~K--------aGimEiaDi~vVNKaD~~g 181 (266)
T PF03308_consen 121 GFDVIIIETVGVGQ----SEV-------DIADMADTVVLVLVPGLGDEIQAIK--------AGIMEIADIFVVNKADRPG 181 (266)
T ss_dssp T-SEEEEEEESSST----HHH-------HHHTTSSEEEEEEESSTCCCCCTB---------TTHHHH-SEEEEE--SHHH
T ss_pred CCCEEEEeCCCCCc----cHH-------HHHHhcCeEEEEecCCCccHHHHHh--------hhhhhhccEEEEeCCChHH
Confidence 57889999999732 111 1235689999988765554322111 1112235699999999543
Q ss_pred ChhHHHHH-----------hccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 439 DPQKVKLE-----------AQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 439 ~~~~~~~~-----------~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
........ ..+.+|++.+||.+|.||++|.++|.++...
T Consensus 182 A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 182 ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 32211110 1134689999999999999999999886543
No 304
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.86 E-value=7.9e-09 Score=103.49 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=99.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE-eCCeeEEEeeccc-----ccccchhhHHHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVG-----FIQKLPTTLVAAFRAT 385 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG-----~i~~lp~~l~e~f~~t 385 (536)
.|.++++|.+|+|||||+|.+........ ....-.+.++.+.. .-|..+.++|.|| +...+|......-..+
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~--t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIAD--TSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhh--hcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 46799999999999999999987543210 00002233344332 2466889999999 4445565555444444
Q ss_pred HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--------HH--------HHHhcc
Q 009371 386 LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--------KV--------KLEAQK 449 (536)
Q Consensus 386 l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--------~~--------~~~~~~ 449 (536)
+.+-.+.-.+++++|++-+....+... +..+|..++|+.+|+||||...... .. ......
T Consensus 214 ~leR~nLv~~FLLvd~sv~i~~~D~~~----i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~ 289 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVPIQPTDNPE----IAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLV 289 (320)
T ss_pred HHhhhhhheeeeeeeccCCCCCCChHH----HHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceec
Confidence 444444445677889988766555433 2334456899999999999764321 00 011123
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHH
Q 009371 450 REDVVCISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 450 ~~~~v~vSAktg~GIdeL~~~I~~ 473 (536)
..|++.+|+.++.|++.|+-.|..
T Consensus 290 ~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 290 DLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cCCceeeecccccCceeeeeehhh
Confidence 467889999999999998766544
No 305
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.1e-08 Score=105.34 Aligned_cols=141 Identities=26% Similarity=0.228 Sum_probs=92.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc---------------------------------ccccccccCCeeEEEEEeCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA---------------------------------EDRLFATLDPTTRRVQMKNG 359 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~---------------------------------~~~~~~Tld~ttr~i~l~~g 359 (536)
.++..+|...-||||||-+|+.....+ +..-+.|+|...|-+.. ..
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT-~K 85 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST-EK 85 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-cc
Confidence 468899999999999999997542111 01112233333333322 56
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
++|++.||||+ ....+.+.....-||+.++++|+..+..++.... -.+...+|+ ..+++.+|||||.+.
T Consensus 86 RkFIiADTPGH--------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH-s~I~sLLGI--rhvvvAVNKmDLvdy 154 (431)
T COG2895 86 RKFIIADTPGH--------EQYTRNMATGASTADLAILLVDARKGVLEQTRRH-SFIASLLGI--RHVVVAVNKMDLVDY 154 (431)
T ss_pred ceEEEecCCcH--------HHHhhhhhcccccccEEEEEEecchhhHHHhHHH-HHHHHHhCC--cEEEEEEeeeccccc
Confidence 78999999998 2333445556678999999999988876655442 234444554 357899999999986
Q ss_pred hhH-HHHH-----------hccCCCEEEEeccCCCCHH
Q 009371 440 PQK-VKLE-----------AQKREDVVCISALSGNGLD 465 (536)
Q Consensus 440 ~~~-~~~~-----------~~~~~~~v~vSAktg~GId 465 (536)
.+. +... ......++|+||..|.|+-
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 431 1111 1123478999999999874
No 306
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.83 E-value=1.5e-08 Score=106.86 Aligned_cols=88 Identities=25% Similarity=0.260 Sum_probs=71.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeEEEEEeCC----------------eeEEEeecccccccchh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTRRVQMKNG----------------GEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr~i~l~~g----------------~~i~LiDTpG~i~~lp~ 376 (536)
.++|||.||+|||||+|+|++... .+.+++|+|.+|..+.+.+++. ..+.++|.||++.....
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~ 83 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASK 83 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhc
Confidence 589999999999999999999988 7889999999999998887653 25789999999764332
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCC
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDIS 402 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s 402 (536)
... .-...+..++.+|+++||+|+.
T Consensus 84 g~G-lgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 84 GEG-LGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ccC-cchHHHHHHHhCCEEEEEEeCC
Confidence 211 1123566789999999999985
No 307
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.83 E-value=4.4e-08 Score=108.78 Aligned_cols=125 Identities=12% Similarity=0.136 Sum_probs=75.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccc-cccccCCeeEEEEEeCCeeEEEeecccccccch-hhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDR-LFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP-TTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp-~~l~e~f~~-tl~ei 389 (536)
.+|+++|.||+||||++|+|+|........ ...|...... ....+|..+.++||||+.+... ......+.. ....+
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei-~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEI-EGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEE-EEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 379999999999999999999986543221 1111111111 1124788999999999975421 111222222 22222
Q ss_pred H--hccceEEEEeCCCcch-HHHHHHHHHHHhhcCC-CCCCEEEEEEcCCCCC
Q 009371 390 S--ESSLLVHVVDISHPLA-EQQIEAVDKVLSELDV-SSIPKLMIWNKVDKVC 438 (536)
Q Consensus 390 ~--~aDliLlVvD~s~~~~-~~~~~~v~~vL~~l~~-~~~piIvVlNKiDl~~ 438 (536)
. .+|++|+|...+.... .++...+..+.+.+|. .-..+|+|++..|..+
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2 4788998877653322 2444455555444542 1246899999999986
No 308
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.83 E-value=2.6e-09 Score=105.72 Aligned_cols=166 Identities=25% Similarity=0.342 Sum_probs=113.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.+|+++|.|.+|||||+..|+|....+..+-|+|+....+.+.+ .|.++.+.|.||+++..-..... -+..+.-.+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgr-g~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGR-GKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec-cccceeeecCcchhcccccCCCC-ccEEEEEeecc
Confidence 36999999999999999999998777777777777666666666 78899999999997643211100 11222334568
Q ss_pred cceEEEEeCCCcchHH--------------------------------------HHHHHHHHHhhcCC------------
Q 009371 393 SLLVHVVDISHPLAEQ--------------------------------------QIEAVDKVLSELDV------------ 422 (536)
Q Consensus 393 DliLlVvD~s~~~~~~--------------------------------------~~~~v~~vL~~l~~------------ 422 (536)
.++++|.|+..|.... +.+.+..++.+...
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 8999999987654321 11122222222211
Q ss_pred ------------CCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcccceEE
Q 009371 423 ------------SSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDSMVWV 482 (536)
Q Consensus 423 ------------~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~ 482 (536)
..+|.+.++||+|-..-++.. .....+..+++||.++.|+++|++.+.+.+.-.+++.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd--ii~~iphavpISA~~~wn~d~lL~~mweyL~LvriYt 287 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD--IIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYT 287 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccc--eeeeccceeecccccccchHHHHHHHhhcchheEEec
Confidence 136899999999976533211 1123467899999999999999999999887554443
No 309
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.9e-08 Score=91.63 Aligned_cols=152 Identities=23% Similarity=0.229 Sum_probs=101.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
++.++|--|+||+|++-++--.++. ... .|.......+.+ .+-++.+||.-|.-+-. ..++ .++.+.|
T Consensus 20 rililgldGaGkttIlyrlqvgevv-ttk--Ptigfnve~v~y-KNLk~~vwdLggqtSir-----PyWR---cYy~dt~ 87 (182)
T KOG0072|consen 20 RILILGLDGAGKTTILYRLQVGEVV-TTK--PTIGFNVETVPY-KNLKFQVWDLGGQTSIR-----PYWR---CYYADTD 87 (182)
T ss_pred EEEEeeccCCCeeEEEEEcccCccc-ccC--CCCCcCcccccc-ccccceeeEccCccccc-----HHHH---HHhcccc
Confidence 5899999999999998776432221 111 122223344444 56788999999874322 2232 2457789
Q ss_pred ceEEEEeCCCcchH-HHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---H-----HHHhccCCCEEEEeccCCCCH
Q 009371 394 LLVHVVDISHPLAE-QQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---V-----KLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 394 liLlVvD~s~~~~~-~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~-----~~~~~~~~~~v~vSAktg~GI 464 (536)
.+|+|+|.++...- .....+..+|.+-...+..+++++||.|....... . .........+|..||.+|+|+
T Consensus 88 avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 88 AVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL 167 (182)
T ss_pred eEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence 99999999886532 22233455666656667788999999997653211 1 112223467899999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
+..++|+.+.+..
T Consensus 168 d~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 168 DPAMDWLQRPLKS 180 (182)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999988764
No 310
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=4e-08 Score=99.04 Aligned_cols=154 Identities=20% Similarity=0.247 Sum_probs=100.8
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCcc----------------ccccccccccCCeeEEEEE-eCCeeEEEeeccccccc
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATV----------------LAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~----------------~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~~ 373 (536)
+...|+.+|+.+.|||||..+|++.-. ..+...+.|+.+ .++.+ ...+.+-.+|+||+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITInt--ahveyet~~rhyahVDcPGH--- 85 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINT--AHVEYETANRHYAHVDCPGH--- 85 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceecc--ceeEEecCCceEEeccCCCh---
Confidence 345799999999999999999975311 001111223332 23333 24567889999999
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhHHHHHh-----
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQKVKLEA----- 447 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~~~~~~----- 447 (536)
.+.++.++....+.|..|+|+.+.++...+..+.+. +-+++ +.| +++++||+|+.++.+.+.+..
T Consensus 86 -----aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larqv---Gvp~ivvflnK~Dmvdd~ellelVemEvre 156 (394)
T COG0050 86 -----ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRE 156 (394)
T ss_pred -----HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHH
Confidence 456777777888999999999999988877776543 22333 455 567889999998765432211
Q ss_pred ------c--cCCCEEEEeccCC-C-------CHHHHHHHHHHHhccc
Q 009371 448 ------Q--KREDVVCISALSG-N-------GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 448 ------~--~~~~~v~vSAktg-~-------GIdeL~~~I~~~l~~~ 478 (536)
. ...|++.-||..- + .|.+|++++.+.+...
T Consensus 157 LLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 157 LLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 1 2346777777632 2 2567777777766543
No 311
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=5.5e-08 Score=102.58 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=97.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc--c------c-cccccccc-----------cCCeeEEEEE-eCCeeEEEeecccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT--V------L-AEDRLFAT-----------LDPTTRRVQM-KNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~--~------~-~~~~~~~T-----------ld~ttr~i~l-~~g~~i~LiDTpG~i~ 372 (536)
+.|||.+|.||||||-..|+-.. . . .....+++ +..++..+++ +++..++|+||||+-+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 48999999999999999875210 0 0 01111121 1223333333 4788899999999822
Q ss_pred cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCC
Q 009371 373 KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKRED 452 (536)
Q Consensus 373 ~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~ 452 (536)
+-..|+.-+..+|.+++|+|+..+...+.++.+ ++++ ..++|++.++||+|....
T Consensus 94 --------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLf-eVcr---lR~iPI~TFiNKlDR~~r------------- 148 (528)
T COG4108 94 --------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLF-EVCR---LRDIPIFTFINKLDREGR------------- 148 (528)
T ss_pred --------cchhHHHHHHhhheeeEEEecccCccHHHHHHH-HHHh---hcCCceEEEeeccccccC-------------
Confidence 112356666778999999999998877765543 3333 358999999999996532
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHh
Q 009371 453 VVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQV 500 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~ 500 (536)
.==+|++.|.+.|.-.+.++. .|...|..+..+++.
T Consensus 149 ----------dP~ELLdEiE~~L~i~~~Pit--WPIG~gk~F~Gvy~l 184 (528)
T COG4108 149 ----------DPLELLDEIEEELGIQCAPIT--WPIGMGKDFKGVYHL 184 (528)
T ss_pred ----------ChHHHHHHHHHHhCcceeccc--ccccCCcccceeeee
Confidence 233677788887776654443 566666665555543
No 312
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.72 E-value=2.4e-08 Score=102.50 Aligned_cols=89 Identities=29% Similarity=0.425 Sum_probs=72.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC----------------eeEEEeecccccccch
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG----------------GEFLLTDTVGFIQKLP 375 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g----------------~~i~LiDTpG~i~~lp 375 (536)
..+++|||.||+|||||+|+|+.......+.+|+|++|....+..++. ..+.+.|++|+.....
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 357999999999999999999999999999999999998887776331 2577999999976433
Q ss_pred --hhHHHHHHHhHHHHHhccceEEEEeCCC
Q 009371 376 --TTLVAAFRATLEEISESSLLVHVVDISH 403 (536)
Q Consensus 376 --~~l~e~f~~tl~ei~~aDliLlVvD~s~ 403 (536)
..+...| +..++.+|.+++|+++..
T Consensus 100 ~G~GLGN~F---Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKF---LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHH---HHhhhhccceeEEEEecC
Confidence 3444444 677889999999999864
No 313
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.71 E-value=3.7e-08 Score=106.91 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=98.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc--cc-cccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE--DR-LFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~--~~-~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
.+|+++|..|+|||||+-+|+...+... .. +-.+++ .++ .++..+..++||..-.+ .-.....++
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~--------~~~~l~~Ei 77 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSD--------DRLCLRKEI 77 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---Ccc-CcCcCceEEEecccccc--------hhHHHHHHH
Confidence 3699999999999999999998765321 00 011111 111 24566788999974311 112234678
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcC-----CCCCCEEEEEEcCCCCCChhH--------HHHHhccCCCEEEE
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELD-----VSSIPKLMIWNKVDKVCDPQK--------VKLEAQKREDVVCI 456 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~-----~~~~piIvVlNKiDl~~~~~~--------~~~~~~~~~~~v~v 456 (536)
+.||++.+|+..+++.+.+.+. ..||-.+. ....|+|+|+||+|....... +......-..+|.+
T Consensus 78 rkA~vi~lvyavd~~~T~D~is--t~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciec 155 (625)
T KOG1707|consen 78 RKADVICLVYAVDDESTVDRIS--TKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIEC 155 (625)
T ss_pred hhcCEEEEEEecCChHHhhhhh--hhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhh
Confidence 9999999999998876654433 23443332 146899999999998765322 11111223468999
Q ss_pred eccCCCCHHHHHHHHHHHhc
Q 009371 457 SALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~l~ 476 (536)
||++-.++.+++-.-.+.+-
T Consensus 156 SA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhhhhHhhhhhhhheee
Confidence 99999999999988776553
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.68 E-value=4.2e-08 Score=94.10 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=39.0
Q ss_pred CEEEEEEcCCCCCChhH-------HHHHhccCCCEEEEeccCCCCHHHHHHHHHHHh
Q 009371 426 PKLMIWNKVDKVCDPQK-------VKLEAQKREDVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 426 piIvVlNKiDl~~~~~~-------~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
.-++|+||.|+.+.... .....+...|++++|+++|+|++++++|+....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 46899999999875322 122345678999999999999999999987653
No 315
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=4.2e-08 Score=93.18 Aligned_cols=157 Identities=21% Similarity=0.187 Sum_probs=105.5
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE--eCC-eeEEEeecccccccchhhHHHHHHHhHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM--KNG-GEFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l--~~g-~~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
.++++++|..|.||||++++.+...+.-... +|+........+ ..| .++..|||+|.-.... + +. .+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~--at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg--l-----rd-gy 79 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYP--ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG--L-----RD-GY 79 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceeccc--CcceeEEeeeeeecccCcEEEEeeecccceeecc--c-----cc-cc
Confidence 4679999999999999999988766643222 222222222222 223 5788999999832110 0 00 12
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HHHHHhccCCCEEEEeccCCCCHH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~~~~~~~~~~~v~vSAktg~GId 465 (536)
+-.+.+.++++|.....+......|.+-+.... .++|+++++||.|...... .+......+..++.+||+++.|++
T Consensus 80 yI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 80 YIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFE 158 (216)
T ss_pred EEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccceeeecccceeEEeecccccccc
Confidence 345667888999998877766666655555543 3699999999999765431 111223345779999999999999
Q ss_pred HHHHHHHHHhcccc
Q 009371 466 EFCSAVQEKLKDSM 479 (536)
Q Consensus 466 eL~~~I~~~l~~~~ 479 (536)
.-+.|+.+.+....
T Consensus 159 kPFl~LarKl~G~p 172 (216)
T KOG0096|consen 159 RPFLWLARKLTGDP 172 (216)
T ss_pred cchHHHhhhhcCCC
Confidence 99999999887543
No 316
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.64 E-value=2.6e-07 Score=94.63 Aligned_cols=124 Identities=23% Similarity=0.355 Sum_probs=70.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccc--------cccCCeeEEEEE-eCCe--eEEEeecccccccchhh----
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLF--------ATLDPTTRRVQM-KNGG--EFLLTDTVGFIQKLPTT---- 377 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~--------~Tld~ttr~i~l-~~g~--~i~LiDTpG~i~~lp~~---- 377 (536)
+.|.++|.+|+|||||+|.|++......+... .+.....+...+ .++. .+.++|||||.+.....
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 46999999999999999999987654332110 111112222222 2333 56799999997644321
Q ss_pred -----HHHHHHHhHHHH----------HhccceEEEEeCCC-cchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 378 -----LVAAFRATLEEI----------SESSLLVHVVDISH-PLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 378 -----l~e~f~~tl~ei----------~~aDliLlVvD~s~-~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
+...|...+.+- ...|++||+++.+. +....+++.+.++-+ ..++|-|+.|+|.....+
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-----~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-----RVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-----TSEEEEEESTGGGS-HHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-----cccEEeEEecccccCHHH
Confidence 112233333221 23589999999864 566677665444322 468899999999887543
No 317
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.63 E-value=3.6e-07 Score=84.65 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=61.4
Q ss_pred HhHHHHH-hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---HHhccCCCEEEEecc
Q 009371 384 ATLEEIS-ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---LEAQKREDVVCISAL 459 (536)
Q Consensus 384 ~tl~ei~-~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~~~~~~~~~v~vSAk 459 (536)
..++.+. .+|++++|+|++++....+.. +...+. ..++|+++|+||+|+.+...... .......+++++||+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~-l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~ 79 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRK-LERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAK 79 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHH-HHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcc
Confidence 3344443 599999999998865433322 222222 23689999999999975422211 111234578999999
Q ss_pred CCCCHHHHHHHHHHHhcc
Q 009371 460 SGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~ 477 (536)
+|.|+++|++.|.+.+..
T Consensus 80 ~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 80 ERLGTKILRRTIKELAKI 97 (156)
T ss_pred ccccHHHHHHHHHHHHhh
Confidence 999999999999988754
No 318
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.5e-07 Score=100.91 Aligned_cols=186 Identities=19% Similarity=0.173 Sum_probs=121.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc---ccc--cccccccCC----eeEE--------EEEeCCeeEEEeecccccccch
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV---LAE--DRLFATLDP----TTRR--------VQMKNGGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~---~~~--~~~~~Tld~----ttr~--------i~l~~g~~i~LiDTpG~i~~lp 375 (536)
..|+++-+-.|||||+-++++-..- ... +.-.++.|. ..+. ...|...+++++||||+++.-
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT- 118 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT- 118 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE-
Confidence 4689999999999999998863211 100 000111111 0011 112567889999999996532
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEE
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVC 455 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~ 455 (536)
-..-..++..|.+++|+|+..+...+....+. .++. .++|.|..+||+|..
T Consensus 119 -------~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~r---y~vP~i~FiNKmDRm------------------ 169 (721)
T KOG0465|consen 119 -------FEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKR---YNVPRICFINKMDRM------------------ 169 (721)
T ss_pred -------EEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHh---cCCCeEEEEehhhhc------------------
Confidence 11223457789999999998887655544433 3333 378999999999955
Q ss_pred EeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEcc-Cc-eEEEEEcCHHHHHHHHHHHHh
Q 009371 456 ISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTE-NG-TLVKAHVPLRFARLLTPMRQM 533 (536)
Q Consensus 456 vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~-~g-~~~~~~lp~~~~~~~~~~~~~ 533 (536)
|.+.-..++.|...+......+ .+|+...+.+..+.+....+...+.. +| .....++|+++.+...+.|..
T Consensus 170 -----Ga~~~~~l~~i~~kl~~~~a~v--qiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~ 242 (721)
T KOG0465|consen 170 -----GASPFRTLNQIRTKLNHKPAVV--QIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQA 242 (721)
T ss_pred -----CCChHHHHHHHHhhcCCchhee--EccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHH
Confidence 4455566666777666544433 47877666666666666666665654 34 555588999999999999987
Q ss_pred hh
Q 009371 534 CI 535 (536)
Q Consensus 534 l~ 535 (536)
|+
T Consensus 243 LI 244 (721)
T KOG0465|consen 243 LI 244 (721)
T ss_pred HH
Confidence 64
No 319
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.53 E-value=2.3e-07 Score=88.28 Aligned_cols=54 Identities=28% Similarity=0.351 Sum_probs=38.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEE-eCCeeEEEeecccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGF 370 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~ 370 (536)
...++++|.||+|||||+|+|++.... ++..++ +|+.... .-+..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg-----~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPG-----VTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCC-----eEcceEEEEeCCCEEEEECcCC
Confidence 357999999999999999999987553 333333 3333222 12346889999995
No 320
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.8e-07 Score=101.03 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=74.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc----cc--cccc-----------cCCeeEEEEEe--CC--eeEEEeeccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE----DR--LFAT-----------LDPTTRRVQMK--NG--GEFLLTDTVGFI 371 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~----~~--~~~T-----------ld~ttr~i~l~--~g--~~i~LiDTpG~i 371 (536)
..|+++|+-++|||+|+..|.+...... +. -+++ +..+.-.+.+. .+ .-++++||||+.
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 3699999999999999999986532110 00 1111 11111111111 22 246799999993
Q ss_pred ccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 372 QKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 372 ~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+...+...++.+|++++|+|+..+.+......++..+. .+.|+++|+||+|++
T Consensus 209 --------nF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 209 --------NFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred --------cchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHHH
Confidence 334456666788999999999999877655555555444 488999999999964
No 321
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.50 E-value=6.8e-07 Score=84.44 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=67.2
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH---HHHhccCCC
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV---KLEAQKRED 452 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~---~~~~~~~~~ 452 (536)
.++...+......+..||++++|+|++.+....... ++..+ .++|.++|+||+|+.+..... .........
T Consensus 4 ~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~----i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 77 (171)
T cd01856 4 GHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPL----LEKIL--GNKPRIIVLNKADLADPKKTKKWLKYFESKGEK 77 (171)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChh----hHhHh--cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCe
Confidence 345566777888899999999999998775433222 22222 257999999999997543211 111122356
Q ss_pred EEEEeccCCCCHHHHHHHHHHHh
Q 009371 453 VVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l 475 (536)
++.+||+++.|+++|.+.+.+.+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 89999999999999999999875
No 322
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.46 E-value=1.2e-06 Score=80.88 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=101.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhH-HHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATL-EEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl-~ei 389 (536)
.+|+++|.+..|||||+-...+............+....+.+.+ .|. .+.+||..|..+ |...+ -..
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSIwdlgG~~~---------~~n~lPiac 90 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSIWDLGGQRE---------FINMLPIAC 90 (205)
T ss_pred EEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEEEecCCcHh---------hhccCceee
Confidence 37999999999999999988876543111111223334455554 444 566999999822 22211 123
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC---hh--HH-----HHHhccCCCEEEEecc
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD---PQ--KV-----KLEAQKREDVVCISAL 459 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~---~~--~~-----~~~~~~~~~~v~vSAk 459 (536)
..+-++++++|.+.+.+......|.+-...++...+| |+|++|-|+.-. +. .+ ......+.+.+++|+.
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts 169 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTS 169 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecc
Confidence 5567899999999987665555554444444445566 688999996422 11 11 1122346789999999
Q ss_pred CCCCHHHHHHHHHHHhcccc
Q 009371 460 SGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~~~ 479 (536)
...|+++++..+...+....
T Consensus 170 ~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred ccccHHHHHHHHHHHHhCCc
Confidence 99999999999888887654
No 323
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.44 E-value=6.2e-07 Score=83.39 Aligned_cols=54 Identities=30% Similarity=0.386 Sum_probs=37.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE-eCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~ 370 (536)
..|+++|.||+|||||+|+|.+...... ....++|+...+ ..+..+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~----~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKV----APIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceee----CCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 3689999999999999999998654321 122334444443 23445889999995
No 324
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.41 E-value=1.8e-06 Score=85.61 Aligned_cols=89 Identities=33% Similarity=0.253 Sum_probs=57.1
Q ss_pred CCCCEEEEEccCCCChHHHHHhhhCC--ccccccccccccCCeeEEEEEe-------CCeeEEEeecccccccchhhHHH
Q 009371 310 VPVPVVSLVGYTNAGKSTLLNRLTGA--TVLAEDRLFATLDPTTRRVQMK-------NGGEFLLTDTVGFIQKLPTTLVA 380 (536)
Q Consensus 310 ~~~~~VaIVG~tnAGKSTLlNaL~g~--~~~~~~~~~~Tld~ttr~i~l~-------~g~~i~LiDTpG~i~~lp~~l~e 380 (536)
.++.+|+|+|++++|||||+|.|+|. .+.+.+ +...+|+.+..+ .+..++++||+|+.+..... .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~----~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~ 78 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD----TSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--F 78 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC----CCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc--h
Confidence 34568999999999999999999998 444332 234455554432 35689999999996432221 0
Q ss_pred HHHHhHHHHH--hccceEEEEeCCCc
Q 009371 381 AFRATLEEIS--ESSLLVHVVDISHP 404 (536)
Q Consensus 381 ~f~~tl~ei~--~aDliLlVvD~s~~ 404 (536)
.....+..+. -+|++|+.++....
T Consensus 79 ~~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 79 EDDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred hhhhHHHHHHHHHhCEEEEeccCccc
Confidence 1122222223 48888888877543
No 325
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.40 E-value=1e-06 Score=81.90 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=61.1
Q ss_pred HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HHHHhccC-CCEEEEeccCC
Q 009371 386 LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VKLEAQKR-EDVVCISALSG 461 (536)
Q Consensus 386 l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~~~~~~~-~~~v~vSAktg 461 (536)
+..+..+|++++|+|++.+..... ..+.+.+... ..++|+|+|+||+|+.+.... ........ ..++++||+++
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccC-HHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 455688999999999998754332 3344455443 235899999999999865422 11111111 12578999999
Q ss_pred CCHHHHHHHHHHHh
Q 009371 462 NGLDEFCSAVQEKL 475 (536)
Q Consensus 462 ~GIdeL~~~I~~~l 475 (536)
.|+++|++.|.+.+
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999998875
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.39 E-value=9.7e-07 Score=84.61 Aligned_cols=113 Identities=23% Similarity=0.215 Sum_probs=69.4
Q ss_pred HHHhHHH-HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HHHH------hcc--
Q 009371 382 FRATLEE-ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VKLE------AQK-- 449 (536)
Q Consensus 382 f~~tl~e-i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~~~------~~~-- 449 (536)
|..++.. +..+|++++|+|++++....... + .. ...++|+++|+||+|+.+.... .... ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~-l---~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPR-L---RL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchh-H---HH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 4555544 47789999999998765322111 1 11 1246899999999999754221 1111 111
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeec-CChhHHHHHHHHh
Q 009371 450 -REDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVP-FDKGELLSTIHQV 500 (536)
Q Consensus 450 -~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip-~~~~~l~~~i~~~ 500 (536)
..+++++||++|.|+++|+++|.+.+.......-.-.| .+...+++.+...
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 13689999999999999999999988643221111112 2344566666553
No 327
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.39 E-value=1.4e-06 Score=88.99 Aligned_cols=57 Identities=33% Similarity=0.411 Sum_probs=40.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeEEEEEeCCeeEEEeecccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~ 372 (536)
..+++++|+||+|||||+|+|.+... .+.+.+++|...+ .+.+ +..+.++||||+..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~--~~~~~l~DtPG~~~ 175 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKL--SDGLELLDTPGILW 175 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEe--CCCEEEEECCCccc
Confidence 35799999999999999999998753 3444444444332 2222 34688999999954
No 328
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.37 E-value=2.9e-06 Score=102.38 Aligned_cols=132 Identities=21% Similarity=0.221 Sum_probs=81.3
Q ss_pred cCCCCCCEEEEEccCCCChHHHHHhhhCCcccccccccc---ccCCeeEEEEEeCCeeEEEeecccccccch------hh
Q 009371 307 RVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFA---TLDPTTRRVQMKNGGEFLLTDTVGFIQKLP------TT 377 (536)
Q Consensus 307 r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~---Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp------~~ 377 (536)
+....+|...|+|++|+||||+|+.- |..+...+.... ...+.++.+.++-....+++||+|.+-..+ ..
T Consensus 106 ~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 106 RYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred hhhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHH
Confidence 34556899999999999999999986 655543321111 111234445555556778999999753221 11
Q ss_pred HHHHHHHhHHHH---HhccceEEEEeCCCcch--HHH--------HHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 378 LVAAFRATLEEI---SESSLLVHVVDISHPLA--EQQ--------IEAVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 378 l~e~f~~tl~ei---~~aDliLlVvD~s~~~~--~~~--------~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
....|-..+... ...++||+++|+++-.. .+. ...+.++...++. ..|+.+|++|||++..-
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~-~~PVYvv~Tk~Dll~GF 259 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA-RFPVYLVLTKADLLAGF 259 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecchhhcCH
Confidence 223333333333 34699999999865421 111 1233444455554 78999999999998653
No 329
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.35 E-value=2.2e-06 Score=87.97 Aligned_cols=56 Identities=36% Similarity=0.452 Sum_probs=40.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeEEEEE-eCCeeEEEeecccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~ 372 (536)
..+++++|.||+|||||+|+|++... .+.+.+++| +...+ .-+..+.++||||+..
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T-----~~~~~~~~~~~~~l~DtPGi~~ 178 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVT-----KAQQWIKLGKGLELLDTPGILW 178 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeE-----EEEEEEEeCCcEEEEECCCcCC
Confidence 35799999999999999999998765 333334433 33332 2245688999999964
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.35 E-value=6.5e-06 Score=84.02 Aligned_cols=149 Identities=18% Similarity=0.258 Sum_probs=84.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccc-cccccCCe-------------eEEEEE---------------------
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDR-LFATLDPT-------------TRRVQM--------------------- 356 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-~~~Tld~t-------------tr~i~l--------------------- 356 (536)
...++++|++|+||||++..|...-...... ...+.|+. ...+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999998886321100000 01111110 000110
Q ss_pred eCCeeEEEeecccccccchhhHHHHHHHhHHHHH-----hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEE
Q 009371 357 KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS-----ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIW 431 (536)
Q Consensus 357 ~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~-----~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVl 431 (536)
..+..++++||||.... ...+........+... .+|.+++|+|++.. ...........+.++ +.-+|+
T Consensus 152 ~~~~D~ViIDT~G~~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~----~~g~Il 224 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQN-KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG----LTGIIL 224 (272)
T ss_pred HCCCCEEEEeCCCCCcc-hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC----CCEEEE
Confidence 13568899999998543 2222333333333222 27889999999754 333333344443332 457899
Q ss_pred EcCCCCCChh-HHHHHhccCCCEEEEeccCCCCHHHHHH
Q 009371 432 NKVDKVCDPQ-KVKLEAQKREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 432 NKiDl~~~~~-~~~~~~~~~~~~v~vSAktg~GIdeL~~ 469 (536)
||+|...... .+........|+.+++ +|+++++|..
T Consensus 225 TKlDe~~~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EccCCCCCccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 9999876543 2223333457888888 8888887643
No 331
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.34 E-value=1.9e-06 Score=79.96 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=38.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeEEEEEeCCeeEEEeecccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGF 370 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~ 370 (536)
...++++|.+|+|||||+|+|++... .++..+++|.+... + ..+..+.++||||+
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~--~~~~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--V--KLDNKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--E--EecCCEEEEECCCC
Confidence 46799999999999999999998653 23333444443322 2 22356899999996
No 332
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.33 E-value=5.3e-06 Score=86.60 Aligned_cols=151 Identities=22% Similarity=0.254 Sum_probs=91.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccc---c-----------cccCCeeEEEEEeC--------------------
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRL---F-----------ATLDPTTRRVQMKN-------------------- 358 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~---~-----------~Tld~ttr~i~l~~-------------------- 358 (536)
..|+..|+.++|||||+-+|+.....-.+-. + -+-+.+.+-+-+.+
T Consensus 118 v~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~ 197 (527)
T COG5258 118 VLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVK 197 (527)
T ss_pred EEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhh
Confidence 4789999999999999999864322111100 0 01111111111212
Q ss_pred --CeeEEEeecccccccchhhHHHHHHHhHHHH--HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcC
Q 009371 359 --GGEFLLTDTVGFIQKLPTTLVAAFRATLEEI--SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKV 434 (536)
Q Consensus 359 --g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei--~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKi 434 (536)
++-+.|+||.|+- ...+.|+..+ ...|-.++++-+.+..+....+.+--.+ ....|+|+|++||
T Consensus 198 ~aDklVsfVDtvGHE--------pwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~----a~~lPviVvvTK~ 265 (527)
T COG5258 198 RADKLVSFVDTVGHE--------PWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIAL----AMELPVIVVVTKI 265 (527)
T ss_pred hcccEEEEEecCCcc--------HHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhh----hhcCCEEEEEEec
Confidence 1345699999982 2234455544 4568899999998887765555433222 2378999999999
Q ss_pred CCCCChhHH------HHH----------------------h---c-cCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 435 DKVCDPQKV------KLE----------------------A---Q-KREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 435 Dl~~~~~~~------~~~----------------------~---~-~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
|+.++.... ... . . .-.|+|.+|+-+|+|++-|.+.+ ..|.
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f-~~Lp 338 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF-LLLP 338 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH-HhCC
Confidence 998753210 000 0 0 12489999999999997655444 3443
No 333
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.32 E-value=1.4e-06 Score=83.48 Aligned_cols=57 Identities=35% Similarity=0.285 Sum_probs=36.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccc---c-ccccccCCeeEEEEE-eCCeeEEEeecccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAE---D-RLFATLDPTTRRVQM-KNGGEFLLTDTVGF 370 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~---~-~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~ 370 (536)
.++++|.+|+|||||+|+|.+...... . ...+...++|+.... .-+..+.++||||+
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 599999999999999999998543210 0 011222334444332 12235789999996
No 334
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=9.4e-07 Score=89.55 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=69.0
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCc----chHHHHHHHHHHHhhcCCCCCCEEEEEEcCCC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHP----LAEQQIEAVDKVLSELDVSSIPKLMIWNKVDK 436 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~----~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl 436 (536)
.+.++|+||+ .-.+..++......|.+++++-+..+ .+.+++..+ +.+. -+.++++-||+|+
T Consensus 126 HVSfVDCPGH--------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav----eiM~--LkhiiilQNKiDl 191 (466)
T KOG0466|consen 126 HVSFVDCPGH--------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV----EIMK--LKHIIILQNKIDL 191 (466)
T ss_pred EEEeccCCch--------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH----HHhh--hceEEEEechhhh
Confidence 4669999998 11223345555667888888776543 233333322 2222 2467899999999
Q ss_pred CCChhHHHHHh----------ccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 437 VCDPQKVKLEA----------QKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 437 ~~~~~~~~~~~----------~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
..+........ ..+.|++++||.-+.||+.+.++|...+...
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 98654332211 2457999999999999999999999988643
No 335
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.31 E-value=2e-06 Score=80.66 Aligned_cols=117 Identities=23% Similarity=0.340 Sum_probs=64.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc-----ccccc-cccCC------eeEEEEEe-----------------------
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA-----EDRLF-ATLDP------TTRRVQMK----------------------- 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~-----~~~~~-~Tld~------ttr~i~l~----------------------- 357 (536)
|.+.++|+.|+|||||++.+....... .+..+ ..++. ....+.+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 468999999999999999987642110 00000 00110 01111111
Q ss_pred ----CCeeEEEeecccccccchhhHHHHH--HHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEE
Q 009371 358 ----NGGEFLLTDTVGFIQKLPTTLVAAF--RATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIW 431 (536)
Q Consensus 358 ----~g~~i~LiDTpG~i~~lp~~l~e~f--~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVl 431 (536)
...+++++||+|... |......+ ...+......|.++.++|+.+..... .....+..++.. .-++|+
T Consensus 81 ~~~~~~~d~I~IEt~G~~~--p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~--~~~~~~~~Qi~~---ad~ivl 153 (158)
T cd03112 81 DAGKIAFDRIVIETTGLAD--PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHL--DQQTEAQSQIAF---ADRILL 153 (158)
T ss_pred HhccCCCCEEEEECCCcCC--HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHh--hccHHHHHHHHH---CCEEEE
Confidence 124668999999954 33333332 22344556789999999986543211 111222333332 237899
Q ss_pred EcCCC
Q 009371 432 NKVDK 436 (536)
Q Consensus 432 NKiDl 436 (536)
||+|+
T Consensus 154 nk~dl 158 (158)
T cd03112 154 NKTDL 158 (158)
T ss_pred ecccC
Confidence 99996
No 336
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.30 E-value=3.4e-06 Score=86.11 Aligned_cols=97 Identities=23% Similarity=0.371 Sum_probs=68.2
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---HHhccCC
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---LEAQKRE 451 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~~~~~~~ 451 (536)
|.++...++.....+..+|++++|+|+..+....... +.+.+ .++|+|+|+||+|+.+...... .......
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~-i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~ 78 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPM-IDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGI 78 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChh-HHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCC
Confidence 3345566777778889999999999998775543322 22222 2689999999999975432111 1112235
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+++++||+++.|+++|++.|.+.+..
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 78999999999999999999887653
No 337
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.30 E-value=9.4e-06 Score=84.67 Aligned_cols=148 Identities=18% Similarity=0.245 Sum_probs=83.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccc-cccccCCe-------------eEEEE---------------------Ee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDR-LFATLDPT-------------TRRVQ---------------------MK 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-~~~Tld~t-------------tr~i~---------------------l~ 357 (536)
..++++|++|+||||++..|.+.-...... ...+.|+. ...+. ..
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~ 194 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA 194 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999997531111000 00111110 00000 01
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHH-----HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEI-----SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWN 432 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei-----~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlN 432 (536)
.+..++++||||....... +.+........+ ...+..++|+|++.+. ..........+.+ -+.-+|+|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~-l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~----~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTN-LMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAV----GLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHH-HHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhC----CCCEEEEE
Confidence 3457899999998543222 222233322222 2356789999998653 2222223322222 24578999
Q ss_pred cCCCCCChh-HHHHHhccCCCEEEEeccCCCCHHHHHH
Q 009371 433 KVDKVCDPQ-KVKLEAQKREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 433 KiDl~~~~~-~~~~~~~~~~~~v~vSAktg~GIdeL~~ 469 (536)
|.|...... .+........|+.+++ +|+++++|..
T Consensus 268 KlD~t~~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 268 KLDGTAKGGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCCCccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 999765432 2333334467899998 8999988643
No 338
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.30 E-value=2.6e-06 Score=80.42 Aligned_cols=55 Identities=33% Similarity=0.371 Sum_probs=37.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGF 370 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~ 370 (536)
.++++++|.+|+|||||+|+|++.... ....+++|...+. +.+ ...+.++||||+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~--~~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKI--SPGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEe--cCCEEEEECCCC
Confidence 357999999999999999999986542 2233333333222 222 246789999997
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.27 E-value=1.3e-06 Score=79.88 Aligned_cols=54 Identities=30% Similarity=0.460 Sum_probs=36.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeeccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFI 371 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i 371 (536)
+++++|.+|+|||||+|+|++.... ....+..|.. ...+.+ + ..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH--FQTIFL-T-PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc--eEEEEe-C-CCEEEEECCCcC
Confidence 6999999999999999999987653 2222222222 122333 2 257899999984
No 340
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=7.6e-07 Score=93.19 Aligned_cols=184 Identities=19% Similarity=0.198 Sum_probs=113.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc--------ccccc----------ccccccCCeeEEEEE-eCCeeEEEeecccccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT--------VLAED----------RLFATLDPTTRRVQM-KNGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~--------~~~~~----------~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~~l 374 (536)
.|+++.+-.+||||.-.+++-.. +..++ ..+.|+ .+..+.+ |.|.+++++||||+.+..
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergiti--qsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITI--QSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCcee--eeeeeecccccceEeeecCCCcceEE
Confidence 58999999999999988875321 11000 001111 1222332 578899999999995421
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEE
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVV 454 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v 454 (536)
- ..-..++..|+++.|+|+|.+...+.+..|. +....++|.+..+||+|
T Consensus 117 l--------everclrvldgavav~dasagve~qtltvwr----qadk~~ip~~~finkmd------------------- 165 (753)
T KOG0464|consen 117 L--------EVERCLRVLDGAVAVFDASAGVEAQTLTVWR----QADKFKIPAHCFINKMD------------------- 165 (753)
T ss_pred E--------EHHHHHHHhcCeEEEEeccCCcccceeeeeh----hccccCCchhhhhhhhh-------------------
Confidence 1 1223456789999999999988766655443 33445889999999999
Q ss_pred EEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChh---HHHHHHHHhceEEEEEEccCceE-----EEEEcCHHHHHH
Q 009371 455 CISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKG---ELLSTIHQVGMVERTEYTENGTL-----VKAHVPLRFARL 526 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~---~l~~~i~~~~~v~~~~y~~~g~~-----~~~~lp~~~~~~ 526 (536)
|.+.+++.-.+.|.+.+........+.+|...+ .++..+|.....-.... ++|.- +--.-.+++.+.
T Consensus 166 ----k~~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncns-ndgkd~e~~plle~ndpel~e~ 240 (753)
T KOG0464|consen 166 ----KLAANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNS-NDGKDFENKPLLEKNDPELAEE 240 (753)
T ss_pred ----hhhhhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCC-CccccccCCcccccCCHHHHHH
Confidence 456678888889999998877666655554433 34555565433221111 12211 111223566677
Q ss_pred HHHHHHhhh
Q 009371 527 LTPMRQMCI 535 (536)
Q Consensus 527 ~~~~~~~l~ 535 (536)
+.+.+..|+
T Consensus 241 ~ae~knal~ 249 (753)
T KOG0464|consen 241 LAEAKNALC 249 (753)
T ss_pred HHHHHHHHH
Confidence 777666553
No 341
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.22 E-value=3.8e-06 Score=77.99 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=54.2
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---HHh-ccCCCEEEEeccCCCCHHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---LEA-QKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~~~-~~~~~~v~vSAktg~GIdeL~ 468 (536)
|++++|+|++.+....... +.. ..+...++|+|+|+||+|+.+...... ... ....+++++||++|.|+++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~-i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPD-IER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHH-HHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHH
Confidence 7899999998875443222 121 223335789999999999976532111 111 224568999999999999999
Q ss_pred HHHHHH
Q 009371 469 SAVQEK 474 (536)
Q Consensus 469 ~~I~~~ 474 (536)
+.|.+.
T Consensus 78 ~~i~~~ 83 (155)
T cd01849 78 SAFTKQ 83 (155)
T ss_pred HHHHHH
Confidence 998764
No 342
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.22 E-value=5.9e-06 Score=83.04 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=60.2
Q ss_pred HHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH----HHHHhccCCCEEEEeccCCC
Q 009371 388 EISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK----VKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~----~~~~~~~~~~~v~vSAktg~ 462 (536)
.+.++|.+++|+|+.++. +...+. +++..+...++|+++|+||+||.+.... .......+.+++++||++|.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~---r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~ 109 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLD---RFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQD 109 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHH---HHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 367899999999999776 444443 3444333357899999999999764322 12222345689999999999
Q ss_pred CHHHHHHHHHH
Q 009371 463 GLDEFCSAVQE 473 (536)
Q Consensus 463 GIdeL~~~I~~ 473 (536)
|+++|++.+..
T Consensus 110 gi~eLf~~l~~ 120 (245)
T TIGR00157 110 GLKELIEALQN 120 (245)
T ss_pred hHHHHHhhhcC
Confidence 99999988764
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=98.21 E-value=1.1e-05 Score=84.71 Aligned_cols=101 Identities=17% Similarity=0.291 Sum_probs=61.7
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
+..++++||+|.... +..+...++... .....|.+++|+|+..+. ...+.+......++ ..-+|+||+|...
T Consensus 222 ~~DvVLIDTaGr~~~-~~~lm~eL~~i~-~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~----~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHT-DANLMDELKKIV-RVTKPDLVIFVGDALAGN--DAVEQAREFNEAVG----IDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCC-cHHHHHHHHHHH-HhhCCceEEEeeccccch--hHHHHHHHHHhcCC----CCEEEEeeecCCC
Confidence 457899999998542 222333333332 234678899999987642 22333333333332 3578899999876
Q ss_pred Chh-HHHHHhccCCCEEEEeccCCCCHHHHHH
Q 009371 439 DPQ-KVKLEAQKREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 439 ~~~-~~~~~~~~~~~~v~vSAktg~GIdeL~~ 469 (536)
... .+........|+.+++ +|+++++|..
T Consensus 294 ~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 KGGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 533 2333334467899988 7999988753
No 344
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.19 E-value=4.1e-06 Score=87.51 Aligned_cols=56 Identities=43% Similarity=0.536 Sum_probs=39.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE-eCCeeEEEeecccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~ 372 (536)
..++++|+||+|||||||+|.+..... .+..+++|...++ .-...+.++||||.+.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~----~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~ 189 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAK----TSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhccccee----eCCCCceecceEEEEcCCCeEEecCCCcCC
Confidence 359999999999999999999986531 1223345544443 2234588999999964
No 345
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=9.2e-06 Score=83.69 Aligned_cols=155 Identities=22% Similarity=0.262 Sum_probs=99.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc---cccccccccC-----------CeeEEEEEe-CCeeEEEeecccccccchh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATLD-----------PTTRRVQMK-NGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tld-----------~ttr~i~l~-~g~~i~LiDTpG~i~~lp~ 376 (536)
...|+-+|+...|||||-.+++..... .....+..+| ..+.++.+. ..+.+--+|+||+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH------ 127 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH------ 127 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch------
Confidence 346899999999999999998742111 0001111111 111222221 2345667999998
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHH-------h--
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLE-------A-- 447 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~-------~-- 447 (536)
.++++.++......|+.|+|+.++++..++..+.+. +.+++|. ..+++.+||.|++++.+.+.+. .
T Consensus 128 --ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL-LArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 128 --ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLL-LARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred --HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHH-HHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 456677777778899999999999998888777654 3456665 3578889999999765533221 1
Q ss_pred ----ccCCCEEEEecc---CCC----C---HHHHHHHHHHHhcc
Q 009371 448 ----QKREDVVCISAL---SGN----G---LDEFCSAVQEKLKD 477 (536)
Q Consensus 448 ----~~~~~~v~vSAk---tg~----G---IdeL~~~I~~~l~~ 477 (536)
....|++.-||+ .|. | |.+|++++...+..
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 123588876665 442 2 56677776666554
No 346
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=8.1e-06 Score=84.81 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=79.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE----------e------C-----------------
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM----------K------N----------------- 358 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l----------~------~----------------- 358 (536)
.|.|.++|+-..||||+|+.|++.++.. -+ ..-.||+..+.. + +
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg-~r--iGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPG-LR--IGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCc-cc--cCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 5899999999999999999999876541 11 111222211110 0 0
Q ss_pred -----------CeeEEEeecccccccchhhHHH--HHHH-hHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCC
Q 009371 359 -----------GGEFLLTDTVGFIQKLPTTLVA--AFRA-TLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSS 424 (536)
Q Consensus 359 -----------g~~i~LiDTpG~i~~lp~~l~e--~f~~-tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~ 424 (536)
-..+.++||||+.+..-+.... .|.. .-.-+..+|.|++++|+..-.-.... .+++..+....
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf---~~vi~aLkG~E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF---KRVIDALKGHE 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH---HHHHHHhhCCc
Confidence 0357899999996533221111 1222 23345789999999998654433333 34555565556
Q ss_pred CCEEEEEEcCCCCCChhHHH
Q 009371 425 IPKLMIWNKVDKVCDPQKVK 444 (536)
Q Consensus 425 ~piIvVlNKiDl~~~~~~~~ 444 (536)
-.+-+|+||+|.++..+..+
T Consensus 212 dkiRVVLNKADqVdtqqLmR 231 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQLMR 231 (532)
T ss_pred ceeEEEeccccccCHHHHHH
Confidence 68889999999988665443
No 347
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.18 E-value=1.5e-06 Score=81.81 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=32.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccc----ccccCCee--EEEEEeCCeeEEEeecccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRL----FATLDPTT--RRVQMKNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~----~~Tld~tt--r~i~l~~g~~i~LiDTpG~i~ 372 (536)
+++++|++|||||||+|+|.+......+.. ...-.+|+ .-+.+++ ...++|||||.+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~--g~~iIDTPGf~~ 99 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD--GGYIIDTPGFRS 99 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT--SEEEECSHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC--CcEEEECCCCCc
Confidence 699999999999999999998732211111 11111222 2222323 357899999954
No 348
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.16 E-value=8.1e-06 Score=83.85 Aligned_cols=97 Identities=25% Similarity=0.389 Sum_probs=68.1
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---HHhccCC
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---LEAQKRE 451 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~~~~~~~ 451 (536)
|.++...++...+.+..+|++++|+|+..+....... +...+ . ++|+++|+||+|+.+...... .......
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~-l~~~~---~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~ 81 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPM-IDKII---G--NKPRLLILNKSDLADPEVTKKWIEYFEEQGI 81 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChh-HHHHh---C--CCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence 4445566777778889999999999998776533221 22222 2 689999999999975422111 1112235
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+++++||+++.|+++|++.|.+.+..
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 78999999999999999998887643
No 349
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.16 E-value=2.9e-06 Score=85.26 Aligned_cols=59 Identities=25% Similarity=0.297 Sum_probs=35.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccc-cc--CCeeEEEEEeCCeeEEEeecccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFA-TL--DPTTRRVQMKNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~-Tl--d~ttr~i~l~~g~~i~LiDTpG~i~ 372 (536)
.++++|++|+|||||+|+|.+......+.... +- ..||+...+..-....++||||+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGGLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCcEEEeCCCccc
Confidence 58999999999999999999864322111111 10 1133222211101237999999965
No 350
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.16 E-value=3.4e-06 Score=82.76 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=86.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc-cccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhH-HHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT-VLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATL-EEISE 391 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~-~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl-~ei~~ 391 (536)
+|.++|.+|+||||+=..+.... ......+++|+|....++.+.++.-+.+||..|.- ......+...- .-..+
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe----~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE----EFMENYLSSQEDNIFRN 81 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH----HHHHHHHhhcchhhhee
Confidence 69999999999999866655321 11234567788888888877666778899999971 11112222111 12467
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCCh
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~ 440 (536)
.+++++|+|++....+.++...+..|+.+- .....+.+.+.|+|++...
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 889999999999888888888777777653 3456688899999998753
No 351
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.15 E-value=1e-05 Score=87.23 Aligned_cols=198 Identities=23% Similarity=0.270 Sum_probs=98.5
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEEEEeccCCCCCcccccchHHHHHHHHHHhCCcEEEeC--CCCCHHHHHHHHHHhCCCc
Q 009371 146 IEESLKELAQLADTAGLMVVGSTHQKLNSPNPRTYIGSGKVAEIKSAIHALGVETVIFD--DELSAGQLRNLEKAFGGDV 223 (536)
Q Consensus 146 ~~~~l~El~~L~~~~g~~vv~~~~~~~~~~~~~~~~g~Gk~~e~~~~~~~~~~~~vi~~--~~Lsp~Q~~nle~~~~~~~ 223 (536)
+|..|+=.+.|=+.+ |--+.++|-.+.-||-+|+- --|+....-+......++++| |=|+|.|...+...|.
T Consensus 158 FErNLE~WRQLWRVl--ErSDivvqIVDARnPllfr~-~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~--- 231 (562)
T KOG1424|consen 158 FERNLEIWRQLWRVL--ERSDIVVQIVDARNPLLFRS-PDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFR--- 231 (562)
T ss_pred hhhCHHHHHHHHHHH--hhcceEEEEeecCCccccCC-hhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHH---
Confidence 356677777776664 22344666667788866654 344444443444455777777 5567888888888873
Q ss_pred eeeccchhhhhh-hhhccccchhhcccchhhccchhh---hhhcCCcccCCCcchhhhhHHHHHHHHHHHH---HHHHHH
Q 009371 224 RVCDRTALILDI-FNQRAATHEAALQLPRLTKMWTHL---ERQAGGQVKGMGEKQIEVDKRILRTQIGVLK---KELESV 296 (536)
Q Consensus 224 ~V~DR~~lil~I-F~~rA~t~eakLql~rL~~~~~~l---~r~~gg~~~g~GE~~le~drr~i~~ri~~Lk---~eL~~l 296 (536)
++. |.=+ |+..++|. .+.---+.+.|..+ ++..+..+ .|+..+ .|.+.+ .++..+
T Consensus 232 ---~~n--i~~vf~SA~~at~--~~~~~~~~e~~r~~d~~~~~~~~~~--~~~~d~---------~i~r~~~d~~e~~~v 293 (562)
T KOG1424|consen 232 ---QNN--IPVVFFSALAATE--QLESKVLKEDRRSLDGVSRALGAIF--VGEVDL---------KIARDKGDGEEIEDV 293 (562)
T ss_pred ---hcC--ceEEEEecccccc--cccccchhhhhhcccchhhhccccc--cccchh---------hhhhhcccccchhhH
Confidence 222 2222 34444222 11100112222111 11111000 011111 111111 222222
Q ss_pred HHHHHH-----hccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE-eCCeeEEEeecccc
Q 009371 297 RKHRKQ-----YRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGF 370 (536)
Q Consensus 297 ~~~r~~-----~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~ 370 (536)
.+.+.. ........+..+|++|||||+||||+||+|.|.+.- .++..++.|+.++. .=...+.|.|+||+
T Consensus 294 ~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkV----sVS~TPGkTKHFQTi~ls~~v~LCDCPGL 369 (562)
T KOG1424|consen 294 EQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKV----SVSSTPGKTKHFQTIFLSPSVCLCDCPGL 369 (562)
T ss_pred HhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCcee----eeecCCCCcceeEEEEcCCCceecCCCCc
Confidence 222111 011122223568999999999999999999997532 12223444444432 11235779999998
Q ss_pred c
Q 009371 371 I 371 (536)
Q Consensus 371 i 371 (536)
+
T Consensus 370 V 370 (562)
T KOG1424|consen 370 V 370 (562)
T ss_pred c
Confidence 4
No 352
>PRK12288 GTPase RsgA; Reviewed
Probab=98.15 E-value=4.4e-06 Score=88.07 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=35.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccccc---CCeeEEEE---EeCCeeEEEeecccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL---DPTTRRVQ---MKNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl---d~ttr~i~---l~~g~~i~LiDTpG~i~ 372 (536)
.++|+|++|||||||+|+|++............. ..||+... ++.| ..++||||+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~--~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG--GDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC--CEEEECCCCCc
Confidence 3799999999999999999987443221111100 11333222 3233 35899999954
No 353
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.13 E-value=2.4e-07 Score=87.83 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=100.5
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe---eEEEeecccccccchhhHHHHHHH-hHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG---EFLLTDTVGFIQKLPTTLVAAFRA-TLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~---~i~LiDTpG~i~~lp~~l~e~f~~-tl~ 387 (536)
++.+.|+|+-|+|||+++.+....++....+.....+....-..+ +.. +..+||..|+. .|.. +.-
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~w-dd~t~vRlqLwdIagQe---------rfg~mtrV 94 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQW-DDKTIVRLQLWDIAGQE---------RFGNMTRV 94 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-ChHHHHHHHHhcchhhh---------hhcceEEE
Confidence 456899999999999999998766543222222233333333334 333 45699999982 2322 333
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhh-c---CCCCCCEEEEEEcCCCCCCh-----hHHHHHh--ccCCCEEEE
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSE-L---DVSSIPKLMIWNKVDKVCDP-----QKVKLEA--QKREDVVCI 456 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~-l---~~~~~piIvVlNKiDl~~~~-----~~~~~~~--~~~~~~v~v 456 (536)
+++.+.+..+|+|.+...+.+....+..-+.. + .....|+++..||||..... ..+.... .....++.+
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtet 174 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTET 174 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeee
Confidence 46788999999999988766554443322221 1 12346889999999986532 1121111 234578999
Q ss_pred eccCCCCHHHHHHHHHHHhc
Q 009371 457 SALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~l~ 476 (536)
|||.+.++++..+.+.+.+.
T Consensus 175 s~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 175 SAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred ccccccChhHHHHHHHHHHH
Confidence 99999999999999887664
No 354
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.13 E-value=1.7e-05 Score=82.83 Aligned_cols=124 Identities=22% Similarity=0.351 Sum_probs=74.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc----cccccccCC----eeEEEEE-eCCe--eEEEeecccccccchhh----
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE----DRLFATLDP----TTRRVQM-KNGG--EFLLTDTVGFIQKLPTT---- 377 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~----~~~~~Tld~----ttr~i~l-~~g~--~i~LiDTpG~i~~lp~~---- 377 (536)
+.|.++|+.|.||||++|.|++...... +.......+ ......+ .+|. .++++|||||.+.....
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 5799999999999999999998733211 111111111 1122222 2343 67799999997654321
Q ss_pred -----HHHHHHHhHHHH-----------HhccceEEEEeCC-CcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 378 -----LVAAFRATLEEI-----------SESSLLVHVVDIS-HPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 378 -----l~e~f~~tl~ei-----------~~aDliLlVvD~s-~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
+...|...+.+= ...+++||++-.+ +.....+++.+.++-+ .+.+|-|+-|+|.....
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-----~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-----RVNLIPVIAKADTLTDD 178 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-----ccCeeeeeeccccCCHH
Confidence 112222222210 2347888888764 4566777776655543 35689999999988765
Q ss_pred h
Q 009371 441 Q 441 (536)
Q Consensus 441 ~ 441 (536)
+
T Consensus 179 E 179 (373)
T COG5019 179 E 179 (373)
T ss_pred H
Confidence 4
No 355
>PRK12289 GTPase RsgA; Reviewed
Probab=98.12 E-value=6.3e-06 Score=87.04 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=59.6
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH---HHHhccCCCEEEEeccCCCCHH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV---KLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~---~~~~~~~~~~v~vSAktg~GId 465 (536)
+.++|.+++|+|+.++.... ..+.++|......++|+++|+||+|+.+..... ......+.+++++||++|.|++
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~--~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~ 164 (352)
T PRK12289 87 VANADQILLVFALAEPPLDP--WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLE 164 (352)
T ss_pred hhcCCEEEEEEECCCCCCCH--HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence 67899999999998764221 122334444344578999999999998654321 1122345689999999999999
Q ss_pred HHHHHHHHH
Q 009371 466 EFCSAVQEK 474 (536)
Q Consensus 466 eL~~~I~~~ 474 (536)
+|++.|...
T Consensus 165 eL~~~L~~k 173 (352)
T PRK12289 165 ALLEQLRNK 173 (352)
T ss_pred HHhhhhccc
Confidence 999998653
No 356
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=2.2e-05 Score=82.33 Aligned_cols=124 Identities=22% Similarity=0.330 Sum_probs=76.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc-------cccccccCCeeEEEEE-eCCe--eEEEeecccccccchhh-----
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE-------DRLFATLDPTTRRVQM-KNGG--EFLLTDTVGFIQKLPTT----- 377 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~-------~~~~~Tld~ttr~i~l-~~g~--~i~LiDTpG~i~~lp~~----- 377 (536)
+++.++|..|.|||||+|.|++..+... ..+..|+....+...+ .+|. +++++|||||.+..+..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 5899999999999999999988744321 1111122222233333 3444 56799999997643321
Q ss_pred ----HHHHHHHhHHH--------H--HhccceEEEEeCCCc-chHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 378 ----LVAAFRATLEE--------I--SESSLLVHVVDISHP-LAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 378 ----l~e~f~~tl~e--------i--~~aDliLlVvD~s~~-~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
....|...+.+ + ...+++||.+..+.. ..+.+++.+.++-. .+++|-|+-|+|.....+
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-----~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-----KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-----cccccceeeccccCCHHH
Confidence 11222222211 1 145788999886543 66777666555433 467888999999887654
No 357
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.09 E-value=1.1e-05 Score=73.70 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=55.2
Q ss_pred HHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH---HHHhccCCCEEEEec
Q 009371 382 FRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV---KLEAQKREDVVCISA 458 (536)
Q Consensus 382 f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~---~~~~~~~~~~v~vSA 458 (536)
|+...+.+..+|++++|+|+..+...... .+.+++.... .++|+++|+||+|+.+..... ........+++++||
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 34566778899999999999887654432 3444555442 478999999999997643321 112223467899999
Q ss_pred cCCCC
Q 009371 459 LSGNG 463 (536)
Q Consensus 459 ktg~G 463 (536)
++|.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 99875
No 358
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.5e-05 Score=84.64 Aligned_cols=128 Identities=16% Similarity=0.283 Sum_probs=82.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
+.|++||+||+||||||..|...-. -.|++..++.+.+..| +++++..+|.- +.+++.-..
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~t------k~ti~~i~GPiTvvsgK~RRiTflEcp~D-----------l~~miDvaK 132 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFT------KQTIDEIRGPITVVSGKTRRITFLECPSD-----------LHQMIDVAK 132 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHH------HhhhhccCCceEEeecceeEEEEEeChHH-----------HHHHHhHHH
Confidence 4678999999999999999975311 1234433344443333 46778888732 334445557
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCE-EEEEEcCCCCCChhHHHHH-----------hccCCCEEEEec
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPK-LMIWNKVDKVCDPQKVKLE-----------AQKREDVVCISA 458 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~pi-IvVlNKiDl~~~~~~~~~~-----------~~~~~~~v~vSA 458 (536)
-||++++++|...+...+.++.+. ++.. .+.|. +-|++..|+......+... ...+...|++|.
T Consensus 133 IaDLVlLlIdgnfGfEMETmEFLn-il~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsg 208 (1077)
T COG5192 133 IADLVLLLIDGNFGFEMETMEFLN-ILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSG 208 (1077)
T ss_pred hhheeEEEeccccCceehHHHHHH-HHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence 799999999999887766665433 3333 35564 5699999998765433322 124567888886
Q ss_pred cCC
Q 009371 459 LSG 461 (536)
Q Consensus 459 ktg 461 (536)
..+
T Consensus 209 V~n 211 (1077)
T COG5192 209 VEN 211 (1077)
T ss_pred ccc
Confidence 543
No 359
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.07 E-value=5.6e-05 Score=81.65 Aligned_cols=145 Identities=20% Similarity=0.215 Sum_probs=76.0
Q ss_pred CEEEEEccCCCChHHHHHhhh------CCcccc--ccc--c--------ccc-cCCeeEEEEE----------------e
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT------GATVLA--EDR--L--------FAT-LDPTTRRVQM----------------K 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~------g~~~~~--~~~--~--------~~T-ld~ttr~i~l----------------~ 357 (536)
..|+++|.+||||||++..|. |..+.. .|. + .+. .......... .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999996 333221 000 0 000 0000000000 0
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+..++|+||||..... ..+........ .....|.+++|+|++.+... .......-+. --+.-+|+||.|..
T Consensus 181 ~~~DvViIDTaGr~~~d-~~lm~El~~i~-~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQE-DSLFEEMLQVA-EAIQPDNIIFVMDGSIGQAA--EAQAKAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcch-HHHHHHHHHHh-hhcCCcEEEEEeccccChhH--HHHHHHHHhc----cCCcEEEEECccCC
Confidence 25688999999974322 22333333332 33457889999998765322 2222222121 12567899999976
Q ss_pred CChh-HHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 438 CDPQ-KVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 438 ~~~~-~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
.... .+........|+.+++ +|++++++
T Consensus 253 argG~aLs~~~~t~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 253 AKGGGALSAVAATKSPIIFIG--TGEHIDDF 281 (429)
T ss_pred CCccHHhhhHHHHCCCeEEEc--CCCChhhc
Confidence 5432 2222223345555554 35555443
No 360
>PRK12289 GTPase RsgA; Reviewed
Probab=98.06 E-value=6.9e-06 Score=86.77 Aligned_cols=57 Identities=39% Similarity=0.437 Sum_probs=35.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccc-cccccccc--CCeeEEEEE---eCCeeEEEeecccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATL--DPTTRRVQM---KNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tl--d~ttr~i~l---~~g~~i~LiDTpG~i~ 372 (536)
.++|+|++|||||||+|+|.+..... ......+- ..||+...+ ++| ..++||||+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g--~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG--GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC--cEEEeCCCccc
Confidence 48999999999999999999764322 11111110 114444443 233 37999999954
No 361
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=7.5e-05 Score=82.99 Aligned_cols=117 Identities=24% Similarity=0.283 Sum_probs=71.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccccc-----------------CC--------------------------e
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL-----------------DP--------------------------T 350 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl-----------------d~--------------------------t 350 (536)
+|+|.|.+++||||++|+++..++..++....|- +. .
T Consensus 111 KV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~s 190 (749)
T KOG0448|consen 111 KVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAGS 190 (749)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcce
Confidence 6999999999999999999876443333221110 00 0
Q ss_pred eEEEEEeCC------eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCC
Q 009371 351 TRRVQMKNG------GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSS 424 (536)
Q Consensus 351 tr~i~l~~g------~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~ 424 (536)
.-.+.++++ ..+.++|.||..-+ ... . .........+|++++|+.+.+..+....+.+..+-+.
T Consensus 191 LlrV~~p~~~csLLrnDivliDsPGld~~--se~-t--swid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~----- 260 (749)
T KOG0448|consen 191 LLRVFWPDDKCSLLRNDIVLIDSPGLDVD--SEL-T--SWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE----- 260 (749)
T ss_pred EEEEEecCccchhhhccceeccCCCCCCc--hhh-h--HHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-----
Confidence 011222333 25779999998322 111 1 1122335679999999999887776665555544332
Q ss_pred CCE-EEEEEcCCCCCCh
Q 009371 425 IPK-LMIWNKVDKVCDP 440 (536)
Q Consensus 425 ~pi-IvVlNKiDl~~~~ 440 (536)
+|- .++.||.|.....
T Consensus 261 KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASE 277 (749)
T ss_pred CCcEEEEechhhhhccc
Confidence 555 4666788987653
No 362
>PRK00098 GTPase RsgA; Reviewed
Probab=98.03 E-value=1e-05 Score=83.56 Aligned_cols=82 Identities=24% Similarity=0.311 Sum_probs=57.2
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH----HHHhccCCCEEEEeccCCCCH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV----KLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~----~~~~~~~~~~v~vSAktg~GI 464 (536)
+.++|++++|+|+.++..... .+.+++..+...++|.++|+||+|+....... ........+++++||++|.|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~--~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTD--LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eecCCEEEEEEECCCCCCCHH--HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 478999999999987643222 12333433334578999999999997443221 112233568999999999999
Q ss_pred HHHHHHHH
Q 009371 465 DEFCSAVQ 472 (536)
Q Consensus 465 deL~~~I~ 472 (536)
++|++.+.
T Consensus 156 ~~L~~~l~ 163 (298)
T PRK00098 156 DELKPLLA 163 (298)
T ss_pred HHHHhhcc
Confidence 99998874
No 363
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.00 E-value=9.6e-05 Score=80.94 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=93.6
Q ss_pred cccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeE-EEeecccccccchhhHHHHHH
Q 009371 305 NRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEF-LLTDTVGFIQKLPTTLVAAFR 383 (536)
Q Consensus 305 ~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i-~LiDTpG~i~~lp~~l~e~f~ 383 (536)
.......++.+.++|+.|+|||.|++++.|......+............+...+..+. .+-|..-. .. .+.
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~-------~~l 489 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQ-------DFL 489 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-cc-------ccc
Confidence 3344556788999999999999999999997665422111112223344444322222 23333211 10 011
Q ss_pred HhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----HH-HHhccCCCEEEEe
Q 009371 384 ATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----VK-LEAQKREDVVCIS 457 (536)
Q Consensus 384 ~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----~~-~~~~~~~~~v~vS 457 (536)
...+ ..||++.+++|.+++...+-...+...-... ...|+++|..|+|+.+..+. .. -......+.+.+|
T Consensus 490 ~~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S 565 (625)
T KOG1707|consen 490 TSKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHIS 565 (625)
T ss_pred cCcc--ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeec
Confidence 1111 5699999999999887665555444333322 57899999999998764321 11 1122335667788
Q ss_pred ccCCCCHHHHHHHHHHHhcc
Q 009371 458 ALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 458 Aktg~GIdeL~~~I~~~l~~ 477 (536)
.+.... .+++..|......
T Consensus 566 ~~~~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 566 SKTLSS-NELFIKLATMAQY 584 (625)
T ss_pred cCCCCC-chHHHHHHHhhhC
Confidence 774323 7788887765543
No 364
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=81.96 Aligned_cols=73 Identities=33% Similarity=0.408 Sum_probs=41.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccc----ccccccccCCeeEE--EEEeCCeeEEEeecccccc-----cchhhHHHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLA----EDRLFATLDPTTRR--VQMKNGGEFLLTDTVGFIQ-----KLPTTLVAAF 382 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~----~~~~~~Tld~ttr~--i~l~~g~~i~LiDTpG~i~-----~lp~~l~e~f 382 (536)
..+++|++|+|||||+|+|.+..... +....-.-.+|+.. +.++.|. .++|||||.+ ..+..+...|
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG--~iiDTPGf~~~~l~~~~~e~l~~~F 243 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG--WIIDTPGFRSLGLAHLEPEDLVQAF 243 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC--EEEeCCCCCccCcccCCHHHHHHHh
Confidence 58999999999999999999743221 11111112223322 2233333 5899999953 2233444555
Q ss_pred HHhHHH
Q 009371 383 RATLEE 388 (536)
Q Consensus 383 ~~tl~e 388 (536)
......
T Consensus 244 ~ef~~~ 249 (301)
T COG1162 244 PEFAEL 249 (301)
T ss_pred HHHHHH
Confidence 544433
No 365
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.99 E-value=1.1e-05 Score=82.81 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=59.1
Q ss_pred HHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---HHhccCCCEEEEeccCCCCH
Q 009371 389 ISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---LEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~~~~~~~~~v~vSAktg~GI 464 (536)
+.++|.+++|+|+.++. +.... .+++..+...++|.++|+||+|+.+..+... .......+++++||++|.|+
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~l---dr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLL---DRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHH---HHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 46799999999998876 43333 3344433345789999999999976533211 12224568999999999999
Q ss_pred HHHHHHHHH
Q 009371 465 DEFCSAVQE 473 (536)
Q Consensus 465 deL~~~I~~ 473 (536)
++|+..|..
T Consensus 153 ~~L~~~L~~ 161 (287)
T cd01854 153 DELREYLKG 161 (287)
T ss_pred HHHHhhhcc
Confidence 999988764
No 366
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=1.6e-05 Score=88.79 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=77.6
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccc-------cCCeeEEEEE--------eCCeeEEEeecccccccch
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFAT-------LDPTTRRVQM--------KNGGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~T-------ld~ttr~i~l--------~~g~~i~LiDTpG~i~~lp 375 (536)
++..++++.+...|||||...|...+--+..++..+ .|..+|.+++ ..+..++++|+||+++..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~- 86 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS- 86 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh-
Confidence 345799999999999999999976543322222111 1223344443 245678899999996521
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCC
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDK 436 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl 436 (536)
...-....-+|+.++++|+-.+...+....+.+++.+ +...++|+||+|.
T Consensus 87 -------sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 -------SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKIDR 136 (887)
T ss_pred -------hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhhh
Confidence 1122334668999999999999888877666655443 6678999999994
No 367
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.98 E-value=1.7e-05 Score=81.55 Aligned_cols=59 Identities=37% Similarity=0.401 Sum_probs=35.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccccc---CCeeEEEE-EeCCeeEEEeecccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL---DPTTRRVQ-MKNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl---d~ttr~i~-l~~g~~i~LiDTpG~i~ 372 (536)
.++++|++|||||||+|+|++......+....+. ..+|.... +.-.....++||||+.+
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 5999999999999999999987543222211110 11222222 11111236899999944
No 368
>PRK13796 GTPase YqeH; Provisional
Probab=97.97 E-value=9e-06 Score=86.37 Aligned_cols=59 Identities=34% Similarity=0.334 Sum_probs=37.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccc-ccccCCeeEEEEE-eCCeeEEEeecccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRL-FATLDPTTRRVQM-KNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~-~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~ 372 (536)
.+.+||.+|||||||+|+|.+......+.. .+...+||+.... +-+....++||||++.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 589999999999999999986432111111 1223445544332 1122357999999963
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.96 E-value=4.4e-05 Score=79.48 Aligned_cols=191 Identities=18% Similarity=0.257 Sum_probs=100.2
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cC---CCC--CCEEEEEccCCCChHHHHHhhhCCccc
Q 009371 269 GMGEKQIEVDKRILRTQIGVLKKELESVRKHRKQYRNR-----RV---SVP--VPVVSLVGYTNAGKSTLLNRLTGATVL 338 (536)
Q Consensus 269 g~GE~~le~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~-----r~---~~~--~~~VaIVG~tnAGKSTLlNaL~g~~~~ 338 (536)
|..|.++|........-.+++....-++++++...... |. ..+ -.+|++||...||||||+--|+.....
T Consensus 80 GLseed~eas~at~~~~ae~I~Adv~klreR~~~gG~~~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLD 159 (641)
T KOG0463|consen 80 GLSEEDLEASAATQLKIAEKIPADVTKLRERKQTGGGTEVWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELD 159 (641)
T ss_pred CCCHHHHHHHHHHHHHHHhhCccHhhhhhhHHhcCCCeeEEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeecccc
Confidence 55666666544444333444444444555444332221 11 111 138999999999999999888754211
Q ss_pred c-----cccccc----------------------------ccCCeeEEEEE-----eCCeeEEEeecccccccchhhHHH
Q 009371 339 A-----EDRLFA----------------------------TLDPTTRRVQM-----KNGGEFLLTDTVGFIQKLPTTLVA 380 (536)
Q Consensus 339 ~-----~~~~~~----------------------------Tld~ttr~i~l-----~~g~~i~LiDTpG~i~~lp~~l~e 380 (536)
- ..++|- ..|+.-+.+.| ..-+-+.|+|.+|+..
T Consensus 160 nGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEk-------- 231 (641)
T KOG0463|consen 160 NGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEK-------- 231 (641)
T ss_pred cCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceeeccccceeEEEEeccchhh--------
Confidence 0 000110 00111111111 1123467999999822
Q ss_pred HHHHhHHHH--HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HHHHh--------
Q 009371 381 AFRATLEEI--SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VKLEA-------- 447 (536)
Q Consensus 381 ~f~~tl~ei--~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~~~~-------- 447 (536)
..+.|.-.+ ...|...+++-+.....-...+.+--.|. .++|+.+|++|+|+.+..-. .+...
T Consensus 232 YLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa----L~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gc 307 (641)
T KOG0463|consen 232 YLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA----LHVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGC 307 (641)
T ss_pred hhheeeeccccCCCCceEEEecccccceeccHHhhhhhhh----hcCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCc
Confidence 222222111 23567777777665543222333222222 37899999999998875321 11100
Q ss_pred ----------------------ccCCCEEEEeccCCCCHHHHHHHH
Q 009371 448 ----------------------QKREDVVCISALSGNGLDEFCSAV 471 (536)
Q Consensus 448 ----------------------~~~~~~v~vSAktg~GIdeL~~~I 471 (536)
...+|+|.+|..+|+|++-|...+
T Consensus 308 rK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 308 RKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred ccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 123689999999999998766554
No 370
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.94 E-value=4.2e-05 Score=70.74 Aligned_cols=54 Identities=33% Similarity=0.460 Sum_probs=35.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE-eCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~ 370 (536)
..++++|.+|+|||||+|+|.+...... ....+++....+ ..+..+.+|||||+
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSAST----SPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccc----CCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 4689999999999999999997542211 111123333332 22346889999995
No 371
>PRK00098 GTPase RsgA; Reviewed
Probab=97.93 E-value=2.5e-05 Score=80.67 Aligned_cols=56 Identities=39% Similarity=0.450 Sum_probs=35.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccccccc-cc--CCeeEEEE---EeCCeeEEEeeccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFA-TL--DPTTRRVQ---MKNGGEFLLTDTVGFI 371 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~-Tl--d~ttr~i~---l~~g~~i~LiDTpG~i 371 (536)
+++++|++|||||||+|+|++......+.... +- ..||+... +.++ ..++||||+.
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~--~~~~DtpG~~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG--GLLIDTPGFS 227 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC--cEEEECCCcC
Confidence 58999999999999999999864432221111 00 01222222 2222 4789999996
No 372
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.91 E-value=0.00018 Score=78.00 Aligned_cols=146 Identities=22% Similarity=0.277 Sum_probs=76.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc-cccc--ccccccCCee------------------EEEE----------EeCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV-LAED--RLFATLDPTT------------------RRVQ----------MKNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~--~~~~Tld~tt------------------r~i~----------l~~g~~ 361 (536)
..++|+|++||||||++..|...-. ...+ -.+.+.|+.. .... ...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4799999999999999888864322 1111 1122222210 0000 012457
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
++|+||||....... ....+...+.......-+.+|++++.. ..++.. ++..+...+ +.-++++|+|-.....
T Consensus 302 lVlIDt~G~~~~d~~-~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~---~~~~f~~~~-~~~vI~TKlDet~~~G 374 (424)
T PRK05703 302 VILIDTAGRSQRDKR-LIEELKALIEFSGEPIDVYLVLSATTK--YEDLKD---IYKHFSRLP-LDGLIFTKLDETSSLG 374 (424)
T ss_pred EEEEeCCCCCCCCHH-HHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHH---HHHHhCCCC-CCEEEEeccccccccc
Confidence 899999998543322 223333333311123356777887654 233332 333333222 2358899999865433
Q ss_pred -HHHHHhccCCCEEEEeccCCCCH-HHH
Q 009371 442 -KVKLEAQKREDVVCISALSGNGL-DEF 467 (536)
Q Consensus 442 -~~~~~~~~~~~~v~vSAktg~GI-deL 467 (536)
.+........|+.+++ +|.++ +++
T Consensus 375 ~i~~~~~~~~lPv~yit--~Gq~VpdDl 400 (424)
T PRK05703 375 SILSLLIESGLPISYLT--NGQRVPDDI 400 (424)
T ss_pred HHHHHHHHHCCCEEEEe--CCCCChhhh
Confidence 2333344456777776 46665 444
No 373
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=6.5e-05 Score=81.03 Aligned_cols=146 Identities=19% Similarity=0.273 Sum_probs=78.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc---ccccccccCCee-------------EEEEE---------------eCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA---EDRLFATLDPTT-------------RRVQM---------------KNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~---~~~~~~Tld~tt-------------r~i~l---------------~~g~~ 361 (536)
.+++++|++|+||||++..|.+..... ..-.+.+.+... ..+.+ ..+..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 479999999999999999887631110 000111111100 00000 13457
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
++++||+|....... +.+.+.. +......+-.++|+|++... .+.. +++..+...+ ..=++++|.|-.....
T Consensus 272 ~VLIDTaGrsqrd~~-~~~~l~~-l~~~~~~~~~~LVl~at~~~--~~~~---~~~~~f~~~~-~~~~I~TKlDEt~~~G 343 (420)
T PRK14721 272 MVLIDTVGMSQRDQM-LAEQIAM-LSQCGTQVKHLLLLNATSSG--DTLD---EVISAYQGHG-IHGCIITKVDEAASLG 343 (420)
T ss_pred EEEecCCCCCcchHH-HHHHHHH-HhccCCCceEEEEEcCCCCH--HHHH---HHHHHhcCCC-CCEEEEEeeeCCCCcc
Confidence 889999998543322 2222222 22222234577888987542 2222 3333333222 3457899999876543
Q ss_pred -HHHHHhccCCCEEEEeccCCCCH-HHHH
Q 009371 442 -KVKLEAQKREDVVCISALSGNGL-DEFC 468 (536)
Q Consensus 442 -~~~~~~~~~~~~v~vSAktg~GI-deL~ 468 (536)
.+........|+.+++ +|.++ ++|.
T Consensus 344 ~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 344 IALDAVIRRKLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred HHHHHHHHhCCCEEEEE--CCCCchhhhh
Confidence 2333344556777776 57777 5554
No 374
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.89 E-value=0.00016 Score=70.42 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=79.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccc-ccccccccCCee-------------EEEEE---------------------eC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATLDPTT-------------RRVQM---------------------KN 358 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tld~tt-------------r~i~l---------------------~~ 358 (536)
.+++||++||||||.+-.|...-... ..-.+.+.|... -.+.+ .+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 58999999999999998886421110 000112222210 00110 12
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
+.+++++||||..... ......+...+... ..+-+++|++++... ++...+....+.++ +.=++++|.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d-~~~~~el~~~~~~~-~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~----~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRD-EELLEELKKLLEAL-NPDEVHLVLSATMGQ--EDLEQALAFYEAFG----IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTH-HHHHHHHHHHHHHH-SSSEEEEEEEGGGGG--HHHHHHHHHHHHSS----TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhh-HHHHHHHHHHhhhc-CCccceEEEecccCh--HHHHHHHHHhhccc----CceEEEEeecCCC
Confidence 3578999999984332 22233444444333 567789999987753 33334444444443 2356799999876
Q ss_pred Chh-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 439 DPQ-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 439 ~~~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
... .+........|+-++| +|+++++
T Consensus 155 ~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 155 RLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 543 3333444556777776 4666644
No 375
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.89 E-value=0.00012 Score=72.59 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=70.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc-ccccc------cc--CCeeEEEEEeCCe--eEEEeecccccccchhh----
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE-DRLFA------TL--DPTTRRVQMKNGG--EFLLTDTVGFIQKLPTT---- 377 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~-~~~~~------Tl--d~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~---- 377 (536)
+.|.+||.+|.|||||+|.|....+..+ ..... |. ...++.+. .+|. +++++|||||.+.....
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvie-E~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIE-EKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeee-ecceEEEEEEecCCCcccccCccchhH
Confidence 5799999999999999999986544321 11111 11 11122222 2443 57799999997644321
Q ss_pred -----HHHHHHHhHH-HH----------HhccceEEEEeCCCc-chHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 378 -----LVAAFRATLE-EI----------SESSLLVHVVDISHP-LAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 378 -----l~e~f~~tl~-ei----------~~aDliLlVvD~s~~-~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
..+.+...+. ++ ...+++++.+..+.. ...-+++.++++-+- +.++-|+-|+|-+.-.
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-----vNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-----VNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-----heeeeeEeecccccHH
Confidence 1112222221 11 234678888877543 345566655554433 4578899999976543
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.88 E-value=1.5e-05 Score=84.51 Aligned_cols=59 Identities=32% Similarity=0.299 Sum_probs=37.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccc-cccccCCeeEEEEE-eCCeeEEEeecccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDR-LFATLDPTTRRVQM-KNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~ 372 (536)
.++++|.+|||||||+|+|++......+. ..+..+++|+.+.. .-+..+.++||||+..
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCC
Confidence 59999999999999999999853211111 11223344444332 2234567999999964
No 377
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.00012 Score=87.05 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=81.2
Q ss_pred cccCCCCCCEEEEEccCCCChHHHHHhhhCCcccccccc--ccccCCeeEEEEEeCCeeEEEeecccccccch---hhH-
Q 009371 305 NRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRL--FATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP---TTL- 378 (536)
Q Consensus 305 ~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~--~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp---~~l- 378 (536)
.+|...++|...|||++|+||||++.. +|.++...... .....+.|+...++-+..-+++||.|-..... ..-
T Consensus 118 ~rr~lyeLPWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~ 196 (1188)
T COG3523 118 GRRYLYELPWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDR 196 (1188)
T ss_pred ccchhhcCCceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhH
Confidence 455567789999999999999999876 44544432221 12222226666665667888999999754321 111
Q ss_pred --HHHHHHhHHHH---HhccceEEEEeCCCcch---HHH---HH----HHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 379 --VAAFRATLEEI---SESSLLVHVVDISHPLA---EQQ---IE----AVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 379 --~e~f~~tl~ei---~~aDliLlVvD~s~~~~---~~~---~~----~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
...|-..+... ...++|++-+|+++-.+ .+. .. .+.++-..++ ...|+.+++||.|+.+.-
T Consensus 197 ~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 197 AEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred HHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEecccccccH
Confidence 22232233333 34588999888865322 111 11 1233333334 368999999999999854
No 378
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.87 E-value=0.00024 Score=73.11 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCCEEEEEEcCCCCCC----h----hH---H-----HHHhccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 424 SIPKLMIWNKVDKVCD----P----QK---V-----KLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 424 ~~piIvVlNKiDl~~~----~----~~---~-----~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
++|+++|++|||.+.- . +. + +.....+...|++|+|...||+-|..+|...+...
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 5799999999998431 1 11 1 11223456789999999999999999999877543
No 379
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00056 Score=73.64 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=75.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccc--ccccccCCee-------------EE--EE-E-----------eCCeeEE
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAED--RLFATLDPTT-------------RR--VQ-M-----------KNGGEFL 363 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~--~~~~Tld~tt-------------r~--i~-l-----------~~g~~i~ 363 (536)
..++++|++||||||++..|........+ -.+.+.|+.. .. +. . ..+.+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 36899999999999999998742110000 0111122100 00 00 0 1356889
Q ss_pred EeecccccccchhhHHHHHHHhHHHHHh--ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 364 LTDTVGFIQKLPTTLVAAFRATLEEISE--SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 364 LiDTpG~i~~lp~~l~e~f~~tl~ei~~--aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
++||+|+..... ...+.+...+..... ..-.++|+|++... .+...+......++ +.=+|++|.|-.....
T Consensus 304 LIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~~----~~glIlTKLDEt~~~G 376 (432)
T PRK12724 304 LIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESLN----YRRILLTKLDEADFLG 376 (432)
T ss_pred EEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCCC----CCEEEEEcccCCCCcc
Confidence 999999853222 233344444333221 23578899987653 22222222233332 3457899999765533
Q ss_pred -HHHHHhccCCCEEEEeccCCCCH
Q 009371 442 -KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 442 -~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+........|+.+++ +|+++
T Consensus 377 ~il~i~~~~~lPI~ylt--~GQ~V 398 (432)
T PRK12724 377 SFLELADTYSKSFTYLS--VGQEV 398 (432)
T ss_pred HHHHHHHHHCCCEEEEe--cCCCC
Confidence 2333334456776766 35555
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=97.81 E-value=0.00025 Score=75.42 Aligned_cols=110 Identities=33% Similarity=0.381 Sum_probs=70.2
Q ss_pred HHHHHhHHHHHhcc-ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HHHH-----HhccC
Q 009371 380 AAFRATLEEISESS-LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KVKL-----EAQKR 450 (536)
Q Consensus 380 e~f~~tl~ei~~aD-liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~~~-----~~~~~ 450 (536)
+.|..+++++..+| ++++|+|+.+....- .. .+..+. .+.|+++|+||+|+.+... .... ....+
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~-~~----~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNGSW-IP----GLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCCch-hH----HHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcC
Confidence 45777888888777 899999997744211 11 222211 2679999999999975321 1111 11112
Q ss_pred ---CCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecC---ChhHHHHHHH
Q 009371 451 ---EDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPF---DKGELLSTIH 498 (536)
Q Consensus 451 ---~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~---~~~~l~~~i~ 498 (536)
.+++.+||++|.|+++|++.|.+......++ .+.. ....+++.+.
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~---vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKYREGRDVY---VVGVTNVGKSTLINRII 181 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEE---EEcCCCCcHHHHHHHHH
Confidence 2689999999999999999998875443222 2332 3445666664
No 381
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.78 E-value=9.8e-06 Score=84.80 Aligned_cols=137 Identities=23% Similarity=0.386 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHhCCCceeeccchhhhhhhhhcc------ccchhhcc-----------------cc-hhhccc-hhhhh
Q 009371 207 LSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRA------ATHEAALQ-----------------LP-RLTKMW-THLER 261 (536)
Q Consensus 207 Lsp~Q~~nle~~~~~~~~V~DR~~lil~IF~~rA------~t~eakLq-----------------l~-rL~~~~-~~l~r 261 (536)
.+..|...+..++ .+|||-..+|+++...|. +..|.-|. +| ..+..| .++++
T Consensus 195 f~kGQSkRIW~EL---yKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSk 271 (572)
T KOG2423|consen 195 FSKGQSKRIWGEL---YKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSK 271 (572)
T ss_pred HhccchhHHHHHH---HHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhh
Confidence 4567888888888 699999999999998873 22232221 23 334444 45555
Q ss_pred hcCC------cccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCC
Q 009371 262 QAGG------QVKGMGEKQIEVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 262 ~~gg------~~~g~GE~~le~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..-- ....+|.-.+ -.|.+++.++. .......|++|||||+||||+||+|-..
T Consensus 272 eyPTiAfHAsi~nsfGKgal-----------I~llRQf~kLh----------~dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 272 EYPTIAFHASINNSFGKGAL-----------IQLLRQFAKLH----------SDKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred hCcceeeehhhcCccchhHH-----------HHHHHHHHhhc----------cCccceeeeeecCCCCchHHHHHHHhhc
Confidence 4321 1234553332 12222222221 1112235999999999999999999876
Q ss_pred ccccccccccccCCeeEEEEEeC-CeeEEEeeccccc
Q 009371 336 TVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFI 371 (536)
Q Consensus 336 ~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i 371 (536)
.+-- .+.+.+.|.-.++.. -++|.+||+||..
T Consensus 331 kVCk----vAPIpGETKVWQYItLmkrIfLIDcPGvV 363 (572)
T KOG2423|consen 331 KVCK----VAPIPGETKVWQYITLMKRIFLIDCPGVV 363 (572)
T ss_pred cccc----ccCCCCcchHHHHHHHHhceeEecCCCcc
Confidence 5531 122333333222111 2368899999985
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=97.78 E-value=9.4e-05 Score=78.13 Aligned_cols=83 Identities=23% Similarity=0.337 Sum_probs=58.5
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--H----HHHhccCCCEEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--V----KLEAQKREDVVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~----~~~~~~~~~~v~vSAktg~ 462 (536)
+.++|.+++|++.........++ +++......++|.++|+||+|+.+.... . ......+.+++++||++|.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ld---r~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIID---RYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHH---HHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 36789999999876555444433 3444334457899999999999865321 1 1122335689999999999
Q ss_pred CHHHHHHHHHHH
Q 009371 463 GLDEFCSAVQEK 474 (536)
Q Consensus 463 GIdeL~~~I~~~ 474 (536)
|+++|+++|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998754
No 383
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00013 Score=83.66 Aligned_cols=147 Identities=19% Similarity=0.214 Sum_probs=80.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccc---ccccccCCee-------------EEEEE---------------eCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAED---RLFATLDPTT-------------RRVQM---------------KNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~---~~~~Tld~tt-------------r~i~l---------------~~g~~ 361 (536)
.+++|||++||||||++..|++......+ -.+.+.|+.. ..+.+ ..+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 37899999999999999999875321111 1122222211 00000 12457
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCC-C-CCEEEEEEcCCCCCC
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVS-S-IPKLMIWNKVDKVCD 439 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~-~-~piIvVlNKiDl~~~ 439 (536)
++|+||+|....... +.+..... ......+-+++|+|++.. .+++. ++.+.+... . -+.=+|++|.|-...
T Consensus 266 ~VLIDTAGRs~~d~~-l~eel~~l-~~~~~p~e~~LVLsAt~~--~~~l~---~i~~~f~~~~~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRN-VSEQIAML-CGVGRPVRRLLLLNAASH--GDTLN---EVVHAYRHGAGEDVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHH-HHHHHHHH-hccCCCCeEEEEECCCCc--HHHHH---HHHHHHhhcccCCCCEEEEeccCCCCC
Confidence 899999997433222 22222221 122345568899998753 22222 223222211 0 134578999998765
Q ss_pred hh-HHHHHhccCCCEEEEeccCCCCH-HHHH
Q 009371 440 PQ-KVKLEAQKREDVVCISALSGNGL-DEFC 468 (536)
Q Consensus 440 ~~-~~~~~~~~~~~~v~vSAktg~GI-deL~ 468 (536)
.. .+........|+.+++ +|++| ++|.
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCChhhcc
Confidence 43 2333344567788876 57887 6653
No 384
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00013 Score=77.52 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=74.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc-c--cccccccCCe------------------eEEEEE----------eCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA-E--DRLFATLDPT------------------TRRVQM----------KNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~-~--~~~~~Tld~t------------------tr~i~l----------~~g~~ 361 (536)
..++|+|++|+||||++..|...-... . .-.+.+.|.. ...+.. ..+..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 369999999999999999997542111 0 1112222221 011100 13568
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCC--C--CCEEEEEEcCCC
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVS--S--IPKLMIWNKVDK 436 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~--~--~piIvVlNKiDl 436 (536)
++++||+|...... .+.+.+.. +......+-.++|++++.... +.. .+...-...+.. . -..=+|++|.|-
T Consensus 218 lVLIDTaG~~~~d~-~l~e~La~-L~~~~~~~~~lLVLsAts~~~--~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 218 MVLIDTIGMSQRDR-TVSDQIAM-LHGADTPVQRLLLLNATSHGD--TLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred EEEEcCCCCCcccH-HHHHHHHH-HhccCCCCeEEEEecCccChH--HHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 89999999843221 12222211 112223345688999876532 222 222221111110 0 123578899998
Q ss_pred CCChh-HHHHHhccCCCEEEEeccCCCCH
Q 009371 437 VCDPQ-KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 437 ~~~~~-~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..... .+........|+.+++ +|.++
T Consensus 294 t~~~G~~l~~~~~~~lPi~yvt--~Gq~V 320 (374)
T PRK14722 294 ASNLGGVLDTVIRYKLPVHYVS--TGQKV 320 (374)
T ss_pred CCCccHHHHHHHHHCcCeEEEe--cCCCC
Confidence 76543 2333334456777776 45554
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.0003 Score=77.63 Aligned_cols=141 Identities=19% Similarity=0.260 Sum_probs=73.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc---ccccccccCCee------------------EEEE----------EeCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA---EDRLFATLDPTT------------------RRVQ----------MKNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~---~~~~~~Tld~tt------------------r~i~----------l~~g~~ 361 (536)
..|+|+|++|+||||++..|...-... ..-.+.+.|... .... ...+.+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 479999999999999999987521100 001111222110 0000 012467
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
++|+||+|....... +.+.+. .+.... ....++|+++... ..+.. .+++.+.. ..+.-+|+||+|......
T Consensus 431 LVLIDTaG~s~~D~~-l~eeL~-~L~aa~-~~a~lLVLpAtss--~~Dl~---eii~~f~~-~~~~gvILTKlDEt~~lG 501 (559)
T PRK12727 431 LVLIDTAGMGQRDRA-LAAQLN-WLRAAR-QVTSLLVLPANAH--FSDLD---EVVRRFAH-AKPQGVVLTKLDETGRFG 501 (559)
T ss_pred EEEecCCCcchhhHH-HHHHHH-HHHHhh-cCCcEEEEECCCC--hhHHH---HHHHHHHh-hCCeEEEEecCcCccchh
Confidence 899999998532221 222222 122222 2345677777643 22222 22222221 136779999999865433
Q ss_pred -HHHHHhccCCCEEEEeccCCCCH
Q 009371 442 -KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 442 -~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+........|+.+++ +|.++
T Consensus 502 ~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 502 SALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred HHHHHHHHhCCCEEEEe--CCCCc
Confidence 2333334456777776 46666
No 386
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.75 E-value=0.00022 Score=74.54 Aligned_cols=150 Identities=22% Similarity=0.301 Sum_probs=82.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcc----cc-ccc-cccccCC-------eeEEEEE----------------------
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATV----LA-EDR-LFATLDP-------TTRRVQM---------------------- 356 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~----~~-~~~-~~~Tld~-------ttr~i~l---------------------- 356 (536)
+|+..|-|+=|||||||+|.|+.... ++ .+. --..+|. ...-+.+
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 36789999999999999999985421 10 000 0011121 0011111
Q ss_pred -eCCeeEEEeecccccccchhhHHHHHHH--hHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEc
Q 009371 357 -KNGGEFLLTDTVGFIQKLPTTLVAAFRA--TLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNK 433 (536)
Q Consensus 357 -~~g~~i~LiDTpG~i~~lp~~l~e~f~~--tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNK 433 (536)
.++...+++.|-|.-...|. ...|.. .+......|.++-|+|+++-...... .......++.. .-++|+||
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv--~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qia~---AD~ivlNK 154 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPV--IQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-IAELAEDQLAF---ADVIVLNK 154 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHH--HHHhccccccccceeeceEEEEEeHHHhhhhHHH-HHHHHHHHHHh---CcEEEEec
Confidence 12346789999998543333 333322 33344556889999999875432221 11222333332 34899999
Q ss_pred CCCCCChhHHH-----HHhccCCCEEEEeccCCCCHHHHH
Q 009371 434 VDKVCDPQKVK-----LEAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 434 iDl~~~~~~~~-----~~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
+|+.+...... ...+...+++.+|. .+.+..+++
T Consensus 155 ~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 155 TDLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 99998764211 12234556777776 344444443
No 387
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.70 E-value=0.00032 Score=76.22 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=54.7
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
..++++||+|.... ...+.+.+.. +..+..+|.+++|+|++.. ......+...-..++ ..-+|+||+|....
T Consensus 176 ~DvVIIDTAGr~~~-d~~lm~El~~-l~~~~~pdevlLVvda~~g--q~av~~a~~F~~~l~----i~gvIlTKlD~~a~ 247 (437)
T PRK00771 176 ADVIIVDTAGRHAL-EEDLIEEMKE-IKEAVKPDEVLLVIDATIG--QQAKNQAKAFHEAVG----IGGIIITKLDGTAK 247 (437)
T ss_pred CCEEEEECCCcccc-hHHHHHHHHH-HHHHhcccceeEEEecccc--HHHHHHHHHHHhcCC----CCEEEEecccCCCc
Confidence 47899999997432 2222233322 2334568899999998775 222232222111111 23578999997654
Q ss_pred hh-HHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 440 PQ-KVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 440 ~~-~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
.. .+........|+.+++. |+.+++|
T Consensus 248 ~G~~ls~~~~~~~Pi~fig~--Ge~v~Dl 274 (437)
T PRK00771 248 GGGALSAVAETGAPIKFIGT--GEKIDDL 274 (437)
T ss_pred ccHHHHHHHHHCcCEEEEec--CCCcccC
Confidence 32 23333344567777764 5555443
No 388
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.69 E-value=4.6e-05 Score=66.55 Aligned_cols=114 Identities=14% Similarity=0.045 Sum_probs=64.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
+|+++|..|+|||+|+.++....+.. .++.. |.|+ ..|.. .....++
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~--------~~~~~--------------t~~~---------~~~~~--~~~~s~~ 48 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDY--------VPTVF--------------TIGI---------DVYDP--TSYESFD 48 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCccc--------cCcee--------------hhhh---------hhccc--cccCCCC
Confidence 58999999999999999996543311 11100 0011 00111 1234577
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHH
Q 009371 394 LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.++.|++.....+.... +...+......+.|.+++.||+|+......... ...+++..||++|.|+.
T Consensus 49 ~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~---~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 49 VVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATE---EGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHH---HHHHHHHHhCCCcchhh
Confidence 88888887765543322 222222222346788999999998432211111 11245678999999884
No 389
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00068 Score=72.62 Aligned_cols=149 Identities=20% Similarity=0.259 Sum_probs=80.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc-----ccccccccCCee-----------E----EEEE-------------eCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA-----EDRLFATLDPTT-----------R----RVQM-------------KNG 359 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~-----~~~~~~Tld~tt-----------r----~i~l-------------~~g 359 (536)
..|+++|++|+||||.+..|...-... ..-.+.+.|+.. . .+.. ..+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~ 254 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKD 254 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCC
Confidence 478999999999999998886321100 001112222210 0 0000 135
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
..++++||+|........ .......+......+-+++|+|++... .+.. +++..+...+ +.=++++|.|-...
T Consensus 255 ~DlVLIDTaGr~~~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~---~~~~~~~~~~-~~~~I~TKlDet~~ 327 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMK-LAEMKELLNACGRDAEFHLAVSSTTKT--SDVK---EIFHQFSPFS-YKTVIFTKLDETTC 327 (388)
T ss_pred CCEEEEcCCCCCccCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHH---HHHHHhcCCC-CCEEEEEeccCCCc
Confidence 688999999985432211 222333333322222578899998763 2222 3344432211 34688999998765
Q ss_pred hhH-HHHHhccCCCEEEEeccCCCCH-HHHHHH
Q 009371 440 PQK-VKLEAQKREDVVCISALSGNGL-DEFCSA 470 (536)
Q Consensus 440 ~~~-~~~~~~~~~~~v~vSAktg~GI-deL~~~ 470 (536)
... +........|+.+++ +|+++ ++|..+
T Consensus 328 ~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~ 358 (388)
T PRK12723 328 VGNLISLIYEMRKEVSYVT--DGQIVPHNISIA 358 (388)
T ss_pred chHHHHHHHHHCCCEEEEe--CCCCChhhhhhC
Confidence 432 333334456777776 57777 666443
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00033 Score=74.83 Aligned_cols=142 Identities=18% Similarity=0.270 Sum_probs=75.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc-cccccccCCee-------------E--EEE-E-------------e--CCe
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE-DRLFATLDPTT-------------R--RVQ-M-------------K--NGG 360 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~-~~~~~Tld~tt-------------r--~i~-l-------------~--~g~ 360 (536)
..|+|+|++||||||++..|+..-.... .-.+.+.|+.. . .+. . . .+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 4799999999999999999974211000 00011111110 0 000 0 0 135
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
+++|+||+|..... ..........+.. ...+.+++|+|++... .+.. .+++.+...+ ..=++++|.|-....
T Consensus 322 DvVLIDTaGRs~kd-~~lm~EL~~~lk~-~~PdevlLVLsATtk~--~d~~---~i~~~F~~~~-idglI~TKLDET~k~ 393 (436)
T PRK11889 322 DYILIDTAGKNYRA-SETVEEMIETMGQ-VEPDYICLTLSASMKS--KDMI---EIITNFKDIH-IDGIVFTKFDETASS 393 (436)
T ss_pred CEEEEeCccccCcC-HHHHHHHHHHHhh-cCCCeEEEEECCccCh--HHHH---HHHHHhcCCC-CCEEEEEcccCCCCc
Confidence 78999999984432 2223333333332 3356788889886442 2222 2233332212 345789999977653
Q ss_pred h-HHHHHhccCCCEEEEeccCCCCH
Q 009371 441 Q-KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 441 ~-~~~~~~~~~~~~v~vSAktg~GI 464 (536)
. .+........|+.+++ +|+++
T Consensus 394 G~iLni~~~~~lPIsyit--~GQ~V 416 (436)
T PRK11889 394 GELLKIPAVSSAPIVLMT--DGQDV 416 (436)
T ss_pred cHHHHHHHHHCcCEEEEe--CCCCC
Confidence 3 2333334456776665 45554
No 391
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.62 E-value=0.00035 Score=75.70 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=54.2
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
+..++++||||.... +..+....... ......|.+++|+|+..+ .............++ ..=+|+||+|...
T Consensus 182 ~~DvVIIDTaGr~~~-d~~l~~eL~~i-~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~----i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI-DEELMEELAAI-KEILNPDEILLVVDAMTG--QDAVNTAKTFNERLG----LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCcccc-CHHHHHHHHHH-HHhhCCceEEEEEeccch--HHHHHHHHHHHhhCC----CCEEEEeCccCcc
Confidence 457899999997442 22233333222 234467889999998754 233333333333332 2357799999654
Q ss_pred Chh-HHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 439 DPQ-KVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 439 ~~~-~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
... .+........|+.+++. |+.+++|
T Consensus 254 ~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 254 RGGAALSVRSVTGKPIKFIGV--GEKIDDL 281 (428)
T ss_pred cccHHHHHHHHHCcCEEEEeC--CCChhhC
Confidence 322 22233334567777664 5555443
No 392
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.62 E-value=0.00044 Score=65.12 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=43.5
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
+..++++||||.... .......+... ......|.+++|+|+.... ...+......+..+ ..-+|+||+|...
T Consensus 82 ~~d~viiDt~g~~~~-~~~~l~~l~~l-~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~----~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQI-DENLMEELKKI-KRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG----ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchh-hHHHHHHHHHH-HhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC----CCEEEEECCcCCC
Confidence 456899999997432 22222333222 2234588999999986442 33334444444433 3568889999775
Q ss_pred Ch
Q 009371 439 DP 440 (536)
Q Consensus 439 ~~ 440 (536)
..
T Consensus 154 ~~ 155 (173)
T cd03115 154 RG 155 (173)
T ss_pred Cc
Confidence 43
No 393
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.60 E-value=0.00036 Score=74.24 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=73.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-c--ccccccccCCee------------------EEEEE----------eCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-A--EDRLFATLDPTT------------------RRVQM----------KNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~--~~~~~~Tld~tt------------------r~i~l----------~~g~~ 361 (536)
..|++||||||||||.+-.|...-+. . ..-.+.|.|... ..+.- ....+
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d 283 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD 283 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence 47999999999999999998754331 1 111233333321 00000 12457
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
++|+||.|.-...+ ...+......... ...-+.+|++++.. ..+ +.+++..+...+.. =++++|.|-.....
T Consensus 284 ~ILVDTaGrs~~D~-~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~d---lkei~~~f~~~~i~-~~I~TKlDET~s~G 355 (407)
T COG1419 284 VILVDTAGRSQYDK-EKIEELKELIDVS-HSIEVYLVLSATTK--YED---LKEIIKQFSLFPID-GLIFTKLDETTSLG 355 (407)
T ss_pred EEEEeCCCCCccCH-HHHHHHHHHHhcc-ccceEEEEEecCcc--hHH---HHHHHHHhccCCcc-eeEEEcccccCchh
Confidence 89999999743322 2223333333322 22335566666543 223 34455555543332 46789999765432
Q ss_pred H-HHHHhccCCCEEEEeccCCCCH
Q 009371 442 K-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 442 ~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
. +........|+-+++ +|.++
T Consensus 356 ~~~s~~~e~~~PV~YvT--~GQ~V 377 (407)
T COG1419 356 NLFSLMYETRLPVSYVT--NGQRV 377 (407)
T ss_pred HHHHHHHHhCCCeEEEe--CCCCC
Confidence 2 222233344555554 35443
No 394
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.59 E-value=0.00027 Score=74.99 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=59.2
Q ss_pred HHHHHhHHHH-HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HHHH-----HhccC
Q 009371 380 AAFRATLEEI-SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KVKL-----EAQKR 450 (536)
Q Consensus 380 e~f~~tl~ei-~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~~~-----~~~~~ 450 (536)
+.|...+..+ ..++++++|+|+.+....- . ..+.+.+ .+.|+++|+||+|+.+... .... .....
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~-~---~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSL-I---PELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCc-c---HHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 3455555555 5778999999997654211 1 1112222 2679999999999976421 1111 11122
Q ss_pred ---CCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 451 ---EDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 451 ---~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
..++.+||++|.|+++|++.|.+...
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~~~ 153 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKARN 153 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHHhC
Confidence 25899999999999999999987643
No 395
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.00036 Score=76.50 Aligned_cols=146 Identities=17% Similarity=0.224 Sum_probs=76.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc-c--ccccccCCee-------------EEEEE---------------eCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE-D--RLFATLDPTT-------------RRVQM---------------KNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~-~--~~~~Tld~tt-------------r~i~l---------------~~g~~ 361 (536)
.+++|+|++||||||++..|++...... . -.+.+.|+.. ..+.. ..+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 4799999999999999999986421110 0 0111222210 00000 12346
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
++++||+|...... .+.+.. ..+.......-.++|+|++... .. +.++++.+...+ ..-+|+||+|-.....
T Consensus 337 ~VLIDTaGr~~~d~-~~~e~~-~~l~~~~~p~e~~LVLdAt~~~--~~---l~~i~~~f~~~~-~~g~IlTKlDet~~~G 408 (484)
T PRK06995 337 IVLIDTIGMSQRDR-MVSEQI-AMLHGAGAPVKRLLLLNATSHG--DT---LNEVVQAYRGPG-LAGCILTKLDEAASLG 408 (484)
T ss_pred eEEeCCCCcChhhH-HHHHHH-HHHhccCCCCeeEEEEeCCCcH--HH---HHHHHHHhccCC-CCEEEEeCCCCcccch
Confidence 88999999743221 111111 1111111122267888887543 22 233333333222 3457799999765433
Q ss_pred -HHHHHhccCCCEEEEeccCCCCH-HHHH
Q 009371 442 -KVKLEAQKREDVVCISALSGNGL-DEFC 468 (536)
Q Consensus 442 -~~~~~~~~~~~~v~vSAktg~GI-deL~ 468 (536)
.+........|+.+++ +|+++ ++|.
T Consensus 409 ~~l~i~~~~~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 409 GALDVVIRYKLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred HHHHHHHHHCCCeEEEe--cCCCChhhhc
Confidence 2333444556777776 58888 6653
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.57 E-value=0.00016 Score=67.09 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=18.3
Q ss_pred EEEEccCCCChHHHHHhhhC
Q 009371 315 VSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g 334 (536)
++++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999864
No 397
>PRK01889 GTPase RsgA; Reviewed
Probab=97.54 E-value=0.00034 Score=74.14 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=57.1
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HHHHH--hccCCCEEEEeccCCCCHH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKLE--AQKREDVVCISALSGNGLD 465 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~~--~~~~~~~v~vSAktg~GId 465 (536)
+.++|.+++|+++..+.....+ +++|......+++.++|+||+||.+... ..... ...+.+++++||++|.|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~l---dr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI---ERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH---HHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHH
Confidence 3678999999999755444333 4444444445678899999999987532 11111 1345689999999999999
Q ss_pred HHHHHHH
Q 009371 466 EFCSAVQ 472 (536)
Q Consensus 466 eL~~~I~ 472 (536)
+|..+|.
T Consensus 187 ~L~~~L~ 193 (356)
T PRK01889 187 VLAAWLS 193 (356)
T ss_pred HHHHHhh
Confidence 9999884
No 398
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.52 E-value=0.0019 Score=70.31 Aligned_cols=116 Identities=13% Similarity=0.255 Sum_probs=68.1
Q ss_pred eeEEEeecccccccchhhH----HH-HHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcC
Q 009371 360 GEFLLTDTVGFIQKLPTTL----VA-AFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKV 434 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l----~e-~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKi 434 (536)
.+.+++|.||.|......+ .+ -|.-+-.++.+...||+++--.+ .......+..+...+...+...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS--VDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS--VDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC--cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 4678999999986443222 22 23345556677788888763222 22333445667777788889999999999
Q ss_pred CCCCC----hhHHHHHhc-c-----CCCEEEEeccCC---CCHHHHHHHHHHHhcc
Q 009371 435 DKVCD----PQKVKLEAQ-K-----REDVVCISALSG---NGLDEFCSAVQEKLKD 477 (536)
Q Consensus 435 Dl~~~----~~~~~~~~~-~-----~~~~v~vSAktg---~GIdeL~~~I~~~l~~ 477 (536)
|+... ++++..... . ...++.+-.-.| +.|+++.++=.+.+..
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~FF~n 545 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEEEFFQN 545 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHHHHhhh
Confidence 99764 333333221 1 123444432222 4577776665555543
No 399
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.47 E-value=0.00047 Score=72.03 Aligned_cols=124 Identities=20% Similarity=0.318 Sum_probs=68.0
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCc----cc-cccccc-cccCC------eeEEEEEeC--------------------
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGAT----VL-AEDRLF-ATLDP------TTRRVQMKN-------------------- 358 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~----~~-~~~~~~-~Tld~------ttr~i~l~~-------------------- 358 (536)
.+|...|.|+-|||||||+|.|+... +. +.+..+ ..+|. ....+.+.+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 46889999999999999999997531 11 111111 01111 011122211
Q ss_pred -------CeeEEEeecccccccchhhHHHHHH--HhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEE
Q 009371 359 -------GGEFLLTDTVGFIQKLPTTLVAAFR--ATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLM 429 (536)
Q Consensus 359 -------g~~i~LiDTpG~i~~lp~~l~e~f~--~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIv 429 (536)
....+++.|.|..+ |......|. ..+......+.++.|+|+.+..... ........++.. .-++
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~--p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~--~~~~~~~~Qi~~---AD~I 155 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMAD--PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM--NQFTIAQSQVGY---ADRI 155 (318)
T ss_pred HHhccCCCCCEEEEECCCccC--HHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhc--cccHHHHHHHHh---CCEE
Confidence 13567889999843 433334331 1222333468899999997643211 111112233332 3489
Q ss_pred EEEcCCCCCChh
Q 009371 430 IWNKVDKVCDPQ 441 (536)
Q Consensus 430 VlNKiDl~~~~~ 441 (536)
|+||+|+.+..+
T Consensus 156 vlnK~Dl~~~~~ 167 (318)
T PRK11537 156 LLTKTDVAGEAE 167 (318)
T ss_pred EEeccccCCHHH
Confidence 999999987543
No 400
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00075 Score=66.30 Aligned_cols=175 Identities=20% Similarity=0.324 Sum_probs=90.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEe-ec------ccccccchhhHHHHHH--
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLT-DT------VGFIQKLPTTLVAAFR-- 383 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~Li-DT------pG~i~~lp~~l~e~f~-- 383 (536)
-+|+|+|++|||||||+++|.+... ++.+.+.+ +|..+..- |. .|+.=. ..+.|.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~-----------~~~G~I~i-~g~~~~~~~~~~~~R~~vGmVFQ----~fnLFPHl 92 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE-----------PDSGSITV-DGEDVGDKKDILKLRRKVGMVFQ----QFNLFPHL 92 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC-----------CCCceEEE-CCEeccchhhHHHHHHhcCeecc----cccccccc
Confidence 3799999999999999999988633 34455554 44322110 10 111000 000011
Q ss_pred HhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh------hH--HHHHhccCCCEE-
Q 009371 384 ATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP------QK--VKLEAQKREDVV- 454 (536)
Q Consensus 384 ~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~------~~--~~~~~~~~~~~v- 454 (536)
..++.+..+-. .| ......+..+...++|..+|.. .|.|..+.. ++ +.......+.++
T Consensus 93 TvleNv~lap~--~v---~~~~k~eA~~~A~~lL~~VGL~--------~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL 159 (240)
T COG1126 93 TVLENVTLAPV--KV---KKLSKAEAREKALELLEKVGLA--------DKADAYPAQLSGGQQQRVAIARALAMDPKVML 159 (240)
T ss_pred hHHHHHHhhhH--HH---cCCCHHHHHHHHHHHHHHcCch--------hhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence 11122111111 11 1122344455556777777653 456654421 11 222222334443
Q ss_pred ---EEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEccCceEEEEEcCHHHH
Q 009371 455 ---CISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTENGTLVKAHVPLRFA 524 (536)
Q Consensus 455 ---~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~~g~~~~~~lp~~~~ 524 (536)
++||.+-+=+.++++.+.+.....+- ..+-..+-.....+-+ .+-|-++|..+...-|.++.
T Consensus 160 FDEPTSALDPElv~EVL~vm~~LA~eGmT---MivVTHEM~FAr~Vad-----rviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 160 FDEPTSALDPELVGEVLDVMKDLAEEGMT---MIIVTHEMGFAREVAD-----RVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHcCCe---EEEEechhHHHHHhhh-----eEEEeeCCEEEEecCHHHHh
Confidence 69999999999999999998887642 2233233333333322 24466778666555555554
No 401
>PRK10867 signal recognition particle protein; Provisional
Probab=97.44 E-value=0.00071 Score=73.43 Aligned_cols=99 Identities=18% Similarity=0.285 Sum_probs=52.9
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
+..++++||+|.... ...+....... ......+.+++|+|+... ....+......+.++ ..-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~-d~~lm~eL~~i-~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~----i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHI-DEELMDELKAI-KAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALG----LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCccc-CHHHHHHHHHH-HHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCC----CCEEEEeCccCcc
Confidence 457899999997432 22222322222 223456778999998653 223333333322222 2357889999654
Q ss_pred Ch-hHHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 439 DP-QKVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 439 ~~-~~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
.. ..+........|+.+++. |+++++|
T Consensus 255 rgG~alsi~~~~~~PI~fig~--Ge~v~DL 282 (433)
T PRK10867 255 RGGAALSIRAVTGKPIKFIGT--GEKLDDL 282 (433)
T ss_pred cccHHHHHHHHHCcCEEEEeC--CCccccC
Confidence 32 223333334567777664 5555443
No 402
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.44 E-value=0.00053 Score=72.28 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=21.9
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCC
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.+|...|.|+-|||||||+|.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3578999999999999999999753
No 403
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.43 E-value=0.0019 Score=70.89 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCCEEEEEEcCCCCCCh--------h---HH-----HHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcccc
Q 009371 424 SIPKLMIWNKVDKVCDP--------Q---KV-----KLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 424 ~~piIvVlNKiDl~~~~--------~---~~-----~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
++|++||++|+|..... + .+ ......++..|++|++...+++-|..+|...+....
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence 47999999999975421 1 11 112234677999999999999999999988876543
No 404
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.43 E-value=0.00029 Score=67.19 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=63.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC-----Cccc-cccccc-cccCC------eeEEEEE----------------------e
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG-----ATVL-AEDRLF-ATLDP------TTRRVQM----------------------K 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g-----~~~~-~~~~~~-~Tld~------ttr~i~l----------------------~ 357 (536)
|.+.|.|.-|||||||++.|.. .++. +.+... ..+|. ......+ .
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 5789999999999999999982 2211 111111 01110 0011111 1
Q ss_pred C--CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 358 N--GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 358 ~--g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
. +...+++.|.|.....+ + ......+......+.++.|+|+.+-....... ..+..++... -++|+||+|
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~--l-~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~--~~~~~Qi~~A---DvIvlnK~D 152 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAP--L-ILQDPPLKEDFRLDSIITVVDATNFDELENIP--ELLREQIAFA---DVIVLNKID 152 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGG--H-HHHSHHHHHHESESEEEEEEEGTTHGGHTTHC--HHHHHHHCT----SEEEEE-GG
T ss_pred cCCCcCEEEECCccccccch--h-hhccccccccccccceeEEeccccccccccch--hhhhhcchhc---CEEEEeccc
Confidence 1 34678999999643322 2 11133444455678899999996642221111 2233444333 389999999
Q ss_pred CCCCh
Q 009371 436 KVCDP 440 (536)
Q Consensus 436 l~~~~ 440 (536)
+.+..
T Consensus 153 ~~~~~ 157 (178)
T PF02492_consen 153 LVSDE 157 (178)
T ss_dssp GHHHH
T ss_pred cCChh
Confidence 87654
No 405
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0004 Score=72.59 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=83.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccccc-c----cccc----cCCeeEEE--------------EE-----------eCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAED-R----LFAT----LDPTTRRV--------------QM-----------KNG 359 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~-~----~~~T----ld~ttr~i--------------~l-----------~~g 359 (536)
+|+++|--.+|||||+--|+.....-.+ + +|-. ..+.+..+ .+ ...
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SS 248 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSS 248 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhc
Confidence 5999999999999999888754221100 0 0000 00111111 11 012
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHH--hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS--ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~--~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
+-+.++|.+|+.. ..+.++..+. ..|..++|+.+..+......+.+- .+...++|+.++++|+|+.
T Consensus 249 KlvTfiDLAGh~k--------Y~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLg----l~~AL~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 249 KLVTFIDLAGHAK--------YQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLG----LIAALNIPFFVLVTKMDLV 316 (591)
T ss_pred ceEEEeecccchh--------hheeeeeecccCCCceEEEEEEcCCCCccccHHHHH----HHHHhCCCeEEEEEeeccc
Confidence 4567999999832 2222322221 247788888887776544333322 2222378999999999998
Q ss_pred CChhH---H----HHHh--------------------------ccCCCEEEEeccCCCCHHHHHHHH
Q 009371 438 CDPQK---V----KLEA--------------------------QKREDVVCISALSGNGLDEFCSAV 471 (536)
Q Consensus 438 ~~~~~---~----~~~~--------------------------~~~~~~v~vSAktg~GIdeL~~~I 471 (536)
+.... . +... ..-.|+|.+|..+|+|++-|...+
T Consensus 317 ~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 317 DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 75210 0 0000 112478999999999998665544
No 406
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.39 E-value=0.0019 Score=61.93 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=21.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||++.|+|.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 36999999999999999999986
No 407
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0014 Score=69.82 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=75.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccc-cccccccCCeeE---------------EEEE----------------eCC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAE-DRLFATLDPTTR---------------RVQM----------------KNG 359 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~-~~~~~Tld~ttr---------------~i~l----------------~~g 359 (536)
...++++|++||||||++..|+..-.... .-.+.+.|+... .+.. .++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 34789999999999999999874210000 001122222100 0000 024
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
..++|+||||...... .....+..... ....|.+++|+++... ..+.. .++..+...+ +.-+|++|.|-...
T Consensus 286 ~D~VLIDTAGr~~~d~-~~l~EL~~l~~-~~~p~~~~LVLsag~~--~~d~~---~i~~~f~~l~-i~glI~TKLDET~~ 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAE-ESVSEISAYTD-VVHPDLTCFTFSSGMK--SADVM---TILPKLAEIP-IDGFIITKMDETTR 357 (407)
T ss_pred CCEEEEECCCCCccCH-HHHHHHHHHhh-ccCCceEEEECCCccc--HHHHH---HHHHhcCcCC-CCEEEEEcccCCCC
Confidence 5889999999854322 22222333222 2244666777766332 22222 2333332222 34678999998765
Q ss_pred hh-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 440 PQ-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 440 ~~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
.. .+........|+.++| +|+++.+
T Consensus 358 ~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 358 IGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred ccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 33 2333344456777776 4666543
No 408
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.33 E-value=0.0016 Score=61.18 Aligned_cols=24 Identities=46% Similarity=0.607 Sum_probs=21.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
..++|+|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999863
No 409
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.19 E-value=0.002 Score=53.24 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=57.0
Q ss_pred EEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccc
Q 009371 315 VSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSL 394 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDl 394 (536)
+++.|..|+||||+...|...-.. .+ .+...+ + ++.++|+++........ .......+|.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g---------~~v~~~-~--d~iivD~~~~~~~~~~~-------~~~~~~~~~~ 61 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RG---------KRVLLI-D--DYVLIDTPPGLGLLVLL-------CLLALLAADL 61 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CC---------CeEEEE-C--CEEEEeCCCCccchhhh-------hhhhhhhCCE
Confidence 688899999999999998753111 11 111112 2 78899999875422100 1233467899
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 009371 395 LVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWN 432 (536)
Q Consensus 395 iLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlN 432 (536)
++++++.........................+..+++|
T Consensus 62 vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 62 VIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 99999887665444333332233333333445556655
No 410
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.0065 Score=62.09 Aligned_cols=143 Identities=18% Similarity=0.264 Sum_probs=76.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccc-ccccccccCCe------------------eEEEE-----------E--eCC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATLDPT------------------TRRVQ-----------M--KNG 359 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tld~t------------------tr~i~-----------l--~~g 359 (536)
..+++++|++|+||||++..|++.-... ..-.+.+.|+. ..... + ..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3589999999999999999886531100 00001111110 00000 0 024
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
..++++||||...... ...+.+...+. ....|.+++|+|++... .+. ..+++.+...+ +.=++++|.|-...
T Consensus 155 ~D~ViIDt~Gr~~~~~-~~l~el~~~~~-~~~~~~~~LVl~a~~~~--~d~---~~~~~~f~~~~-~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRAS-ETVEEMIETMG-QVEPDYICLTLSASMKS--KDM---IEIITNFKDIH-IDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCH-HHHHHHHHHHh-hhCCCeEEEEEcCccCH--HHH---HHHHHHhCCCC-CCEEEEEeecCCCC
Confidence 5889999999853322 22333443333 23456788999986542 122 12333333222 34688999998765
Q ss_pred hh-HHHHHhccCCCEEEEeccCCCCH
Q 009371 440 PQ-KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 440 ~~-~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.. .+........|+.+++ +|+++
T Consensus 227 ~G~~l~~~~~~~~Pi~~it--~Gq~v 250 (270)
T PRK06731 227 SGELLKIPAVSSAPIVLMT--DGQDV 250 (270)
T ss_pred ccHHHHHHHHHCcCEEEEe--CCCCC
Confidence 33 2333334456777775 46555
No 411
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.18 E-value=0.0072 Score=55.57 Aligned_cols=22 Identities=50% Similarity=0.729 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|+|||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999986
No 412
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00044 Score=69.66 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+||+|||||||+++++|.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999995
No 413
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.14 E-value=0.0038 Score=55.01 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
|.+.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999853
No 414
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.0074 Score=62.88 Aligned_cols=102 Identities=17% Similarity=0.280 Sum_probs=59.1
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccc-----eEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEE
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSL-----LVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIW 431 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDl-----iLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVl 431 (536)
.+..++++||+|-.... ..+++.......-+...+. +++|+|++-+.. ..|.+.+.++.. . .=+++
T Consensus 220 r~~DvvliDTAGRLhnk-~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~---l----~GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNK-KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG---L----DGIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCc-hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC---C----ceEEE
Confidence 35789999999976543 3334444444444444443 888889987643 344444444322 1 24789
Q ss_pred EcCCCCCChh-HHHHHhccCCCEEEEeccCCCCHHHHHH
Q 009371 432 NKVDKVCDPQ-KVKLEAQKREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 432 NKiDl~~~~~-~~~~~~~~~~~~v~vSAktg~GIdeL~~ 469 (536)
+|+|-...-. .+........|+.++- -|+++++|..
T Consensus 292 TKlDgtAKGG~il~I~~~l~~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 292 TKLDGTAKGGIILSIAYELGIPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred EecccCCCcceeeeHHHHhCCCEEEEe--CCCChhhccc
Confidence 9999543221 1222223456777775 4788888753
No 415
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.11 E-value=0.00081 Score=69.08 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=40.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc------cccccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL------AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~------~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
.+.|.|+|-||+|||||+|++...... ++.+++.|.... ..+.+.+...+.++||||.+..
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccCCceEEecCCCcCCC
Confidence 467999999999999999998643221 223333332221 2234456678899999999653
No 416
>PRK01889 GTPase RsgA; Reviewed
Probab=97.10 E-value=0.0004 Score=73.62 Aligned_cols=24 Identities=50% Similarity=0.738 Sum_probs=21.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
+++++|.+|+|||||+|.|+|...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 699999999999999999998643
No 417
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.10 E-value=0.00075 Score=64.75 Aligned_cols=24 Identities=46% Similarity=0.718 Sum_probs=21.9
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
.|+|+|++|||||||+|.+.|...
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 699999999999999999999643
No 418
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.00048 Score=68.88 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.|+|+|++|||||||+|.+.|..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999974
No 419
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.05 E-value=0.00051 Score=68.00 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=41.8
Q ss_pred eeEEEeecccccccchh-hHHHHHHHhHHHHHhccceEEEEeC---CCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 360 GEFLLTDTVGFIQKLPT-TLVAAFRATLEEISESSLLVHVVDI---SHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~-~l~e~f~~tl~ei~~aDliLlVvD~---s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
..++++|.||+.+--.+ .....+-+.++.....=+++.++|+ ++|... +..+.-.+..+-....|.+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhH
Confidence 46789999999653221 1122222233332233356667775 333221 22222223333334679999999999
Q ss_pred CCCCh
Q 009371 436 KVCDP 440 (536)
Q Consensus 436 l~~~~ 440 (536)
+....
T Consensus 175 l~~~y 179 (290)
T KOG1533|consen 175 LLKKY 179 (290)
T ss_pred HHHhh
Confidence 87643
No 420
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.0072 Score=57.35 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|+|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 421
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.04 E-value=0.017 Score=62.00 Aligned_cols=173 Identities=22% Similarity=0.304 Sum_probs=89.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc-------------------cccccccccCCe-----eEEEEEeCCe--eEEEeec
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL-------------------AEDRLFATLDPT-----TRRVQMKNGG--EFLLTDT 367 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~-------------------~~~~~~~Tld~t-----tr~i~l~~g~--~i~LiDT 367 (536)
-+++|||.-+||||+++++...-+. ..++...|..|. .-.+.+.++. ++.++|+
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiDC 98 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLIDC 98 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEee
Confidence 4899999999999999999753110 111112222221 1334444443 5679999
Q ss_pred ccccccchhh--------H--------HHHHHH-----hHHHHHhcc--ceEEEEeCCCcc--hHHHHHHHHHHHhhcCC
Q 009371 368 VGFIQKLPTT--------L--------VAAFRA-----TLEEISESS--LLVHVVDISHPL--AEQQIEAVDKVLSELDV 422 (536)
Q Consensus 368 pG~i~~lp~~--------l--------~e~f~~-----tl~ei~~aD--liLlVvD~s~~~--~~~~~~~v~~vL~~l~~ 422 (536)
+||+-+.... + .--|.. |..-+..=. +++.--|.|-.. ...-.++=++++.++..
T Consensus 99 VGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~ 178 (492)
T PF09547_consen 99 VGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKE 178 (492)
T ss_pred cceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHH
Confidence 9985211100 0 000111 111111111 233334444321 22223333556666666
Q ss_pred CCCCEEEEEEcCCCCCChhH---HHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcccce-EEEEeec
Q 009371 423 SSIPKLMIWNKVDKVCDPQK---VKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDSMV-WVEALVP 487 (536)
Q Consensus 423 ~~~piIvVlNKiDl~~~~~~---~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~-~~~~~ip 487 (536)
-++|+++++|=.+=...... .......+.|+++++|.. -.-+++...+.+.|.+-.+ .+.+.+|
T Consensus 179 igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLyEFPV~Ei~~~lP 246 (492)
T PF09547_consen 179 IGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLYEFPVSEININLP 246 (492)
T ss_pred hCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHhcCCceEEEeecc
Confidence 68999999998874433211 122334568999999874 3455666666665554332 3333344
No 422
>PRK13695 putative NTPase; Provisional
Probab=97.04 E-value=0.0086 Score=56.54 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=41.6
Q ss_pred HHhccceEEEEe---CCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHH
Q 009371 389 ISESSLLVHVVD---ISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 389 i~~aDliLlVvD---~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GId 465 (536)
+..+|+ +++| ..+.......+.+..+++ .+.|+|+|.||.......+.+ .......++.+ +.+|-+
T Consensus 94 l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~----~~~~~i~v~h~~~~~~~~~~i--~~~~~~~i~~~---~~~~r~ 162 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKSPKFVKAVEEVLD----SEKPVIATLHRRSVHPFVQEI--KSRPGGRVYEL---TPENRD 162 (174)
T ss_pred cCCCCE--EEEECCCcchhhhHHHHHHHHHHHh----CCCeEEEEECchhhHHHHHHH--hccCCcEEEEE---cchhhh
Confidence 345665 5778 333333333444444442 468999999996432211111 11223334444 566778
Q ss_pred HHHHHHHHHhc
Q 009371 466 EFCSAVQEKLK 476 (536)
Q Consensus 466 eL~~~I~~~l~ 476 (536)
++...|.+.++
T Consensus 163 ~~~~~~~~~~~ 173 (174)
T PRK13695 163 SLPFEILNRLK 173 (174)
T ss_pred hHHHHHHHHHh
Confidence 88888877654
No 423
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0085 Score=56.60 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|+|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 424
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.0021 Score=64.99 Aligned_cols=122 Identities=23% Similarity=0.273 Sum_probs=67.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccc----cccccCCeeEEEEEeCC--eeEEEeecccccccchhh-----HHH-
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDR----LFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTT-----LVA- 380 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~----~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~-----l~e- 380 (536)
+.|.-||.+|-|||||+..|.+..+..... +...+...+..+.- .+ .++.++||+||.+.+... .++
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE-snvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE-SNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh-cCeeEEEEEEeecccccccCcccccchHHHH
Confidence 568999999999999999998876542111 11112222332222 22 267899999997644321 122
Q ss_pred ---HHHHhH----------HHH--HhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 381 ---AFRATL----------EEI--SESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 381 ---~f~~tl----------~ei--~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
.|...+ -.+ ...+++++.|..+... ..-++-. ++.+. ..+.+|-|+-|.|-....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvt----mk~Ld-skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVT----MKKLD-SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHH----HHHHh-hhhhhHHHHHHhhhhhHH
Confidence 222222 122 2346788888765432 2222222 23332 245677788899976644
No 425
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.90 E-value=0.0057 Score=53.32 Aligned_cols=101 Identities=18% Similarity=0.272 Sum_probs=59.1
Q ss_pred EEEE-ccCCCChHHHHHhhhCCcccccccc--ccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 315 VSLV-GYTNAGKSTLLNRLTGATVLAEDRL--FATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 315 VaIV-G~tnAGKSTLlNaL~g~~~~~~~~~--~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
|+++ +..|+||||+.-.|...-....+.. ....|+. .+..++++|||+.... .+...+..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-------~~~D~IIiDtpp~~~~----------~~~~~l~~ 64 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-------FGDDYVVVDLGRSLDE----------VSLAALDQ 64 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-------CCCCEEEEeCCCCcCH----------HHHHHHHH
Confidence 3443 4589999998887764322110111 1112222 2237899999987431 12233567
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCC-CCCEEEEEEc
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVS-SIPKLMIWNK 433 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~-~~piIvVlNK 433 (536)
+|.++++++.+... ......+.+.+++.+.. ..++.+|+|+
T Consensus 65 aD~vlvvv~~~~~s-~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 65 ADRVFLVTQQDLPS-IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred cCeEEEEecCChHH-HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 89999998876543 33444455566666654 4567788886
No 426
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.89 E-value=0.00083 Score=70.91 Aligned_cols=74 Identities=26% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE-eCCeeEEEeeccccc
Q 009371 294 ESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGFI 371 (536)
Q Consensus 294 ~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i 371 (536)
+.+...-..+.....-....+|+|+|+||+||||+||+|..... -......+.|+.+.. .-+..+.|+|.||++
T Consensus 234 e~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~----C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv 308 (435)
T KOG2484|consen 234 ETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKA----CNVGNVPGVTRSMQEVKLDKKIRLLDSPGIV 308 (435)
T ss_pred HHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhcc----ccCCCCccchhhhhheeccCCceeccCCcee
No 427
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.82 E-value=0.0011 Score=67.04 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||+++|+|.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999985
No 428
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.79 E-value=0.00042 Score=69.01 Aligned_cols=22 Identities=50% Similarity=0.785 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++++||+|||||||+|.++|.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred EEEEECCCCCCceeeeeeeccc
Confidence 6899999999999999999986
No 429
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0049 Score=63.54 Aligned_cols=38 Identities=34% Similarity=0.615 Sum_probs=29.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEE
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFL 363 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~ 363 (536)
..+|+|++|||||||++++.+.+ .|+.+.+.+ +|..+.
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le-----------~PtsG~v~v-~G~di~ 71 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLE-----------RPTSGSVFV-DGQDLT 71 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccC-----------CCCCceEEE-cCEecc
Confidence 68999999999999999998763 355666665 554443
No 430
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.78 E-value=0.0034 Score=61.41 Aligned_cols=116 Identities=18% Similarity=0.253 Sum_probs=56.4
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHh---ccceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISE---SSLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~---aDliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
..+.++|.||+|+--.|.-+ .+...+.+.. -=++++++|+.--..... +.-....+..+-....|.|=|++|+|
T Consensus 98 ddylifDcPGQIELytH~pV--m~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPV--MPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred CCEEEEeCCCeeEEeecChh--HHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 36789999999863332111 1222222222 124667777543211110 11111122222224689999999999
Q ss_pred CCCChhHHHHHhccCCC---EEEEeccCCC---CHHHHHHHHHHHhccc
Q 009371 436 KVCDPQKVKLEAQKRED---VVCISALSGN---GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 436 l~~~~~~~~~~~~~~~~---~v~vSAktg~---GIdeL~~~I~~~l~~~ 478 (536)
|..............+. ....|. .+. .+..|...|...+...
T Consensus 176 Llk~~~k~~l~~Fl~~d~~~l~~~~~-~~~~s~Kf~~L~~~i~~~v~d~ 223 (273)
T KOG1534|consen 176 LLKDKNKKELERFLNPDEYLLLEDSE-INLRSPKFKKLTKCIAQLVDDY 223 (273)
T ss_pred HhhhhhHHHHHHhcCCchhhhhcccc-cccccHHHHHHHHHHHHHhccc
Confidence 98763221111111111 111111 122 3778888888888764
No 431
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.012 Score=54.58 Aligned_cols=23 Identities=48% Similarity=0.739 Sum_probs=21.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|+|||||++.|+|.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999986
No 432
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0016 Score=64.40 Aligned_cols=22 Identities=45% Similarity=0.780 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++++|++|||||||+++++|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999996
No 433
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.73 E-value=0.01 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..+.+.|++|+|||+|++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 434
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.73 E-value=0.0014 Score=58.96 Aligned_cols=22 Identities=50% Similarity=0.788 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|+|||||++.|+|.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6999999999999999999986
No 435
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0019 Score=63.95 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 436
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.71 E-value=0.0018 Score=64.33 Aligned_cols=23 Identities=52% Similarity=0.720 Sum_probs=21.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.|+|+|++|||||||+|.|.+.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 69999999999999999998864
No 437
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.70 E-value=0.0019 Score=63.03 Aligned_cols=23 Identities=52% Similarity=0.717 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 438
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.70 E-value=0.002 Score=62.94 Aligned_cols=23 Identities=48% Similarity=0.641 Sum_probs=21.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||++.|+|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999986
No 439
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.69 E-value=0.0036 Score=64.05 Aligned_cols=130 Identities=24% Similarity=0.327 Sum_probs=68.3
Q ss_pred CCCCCEEEEEccCCCChHHHHHhhhCCc----ccc-ccccc----------cccCC-----------------eeEE---
Q 009371 309 SVPVPVVSLVGYTNAGKSTLLNRLTGAT----VLA-EDRLF----------ATLDP-----------------TTRR--- 353 (536)
Q Consensus 309 ~~~~~~VaIVG~tnAGKSTLlNaL~g~~----~~~-~~~~~----------~Tld~-----------------ttr~--- 353 (536)
...+|.-.|.||-|||||||+|.++... +++ .+..+ ..... +.+.
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv 133 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV 133 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence 4457888999999999999999987432 111 00000 00000 0000
Q ss_pred ------EEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHH----HHHHHHHHHhhcCCC
Q 009371 354 ------VQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQ----QIEAVDKVLSELDVS 423 (536)
Q Consensus 354 ------i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~----~~~~v~~vL~~l~~~ 423 (536)
+.-.+.....++.|.|+-...|.....-....+..-...|+|+-|+|+.+....- ....+.++..++..
T Consensus 134 raie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~- 212 (391)
T KOG2743|consen 134 RAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIAL- 212 (391)
T ss_pred HHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhh-
Confidence 0001223567899999855444322111111222224568999999996642110 11122333333332
Q ss_pred CCCEEEEEEcCCCCCChh
Q 009371 424 SIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 424 ~~piIvVlNKiDl~~~~~ 441 (536)
.--+++||.|+....+
T Consensus 213 --AD~II~NKtDli~~e~ 228 (391)
T KOG2743|consen 213 --ADRIIMNKTDLVSEEE 228 (391)
T ss_pred --hheeeeccccccCHHH
Confidence 2357789999998643
No 440
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.68 E-value=0.0022 Score=61.31 Aligned_cols=22 Identities=55% Similarity=0.754 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 441
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0026 Score=68.81 Aligned_cols=113 Identities=22% Similarity=0.280 Sum_probs=68.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-----cccccc-----------cccCCeeEEEEE---------------eCCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-----AEDRLF-----------ATLDPTTRRVQM---------------KNGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-----~~~~~~-----------~Tld~ttr~i~l---------------~~g~~ 361 (536)
..+.++.+...|||||-.+|....-. .++..| .|+..+.-.+.+ .++.-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 34788889999999999998632110 111111 111111111111 12345
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
++++|.||+.+.. ...-..++..|+.+.|+|.-++...+....+.+.+.+ .+.-++|+||+|..
T Consensus 100 iNLIDSPGHVDFS--------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDFS--------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccch--------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHH
Confidence 7799999995421 2223345778999999999888776665555555554 34457889999963
No 442
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0087 Score=64.67 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=57.8
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCc-chHHHHHHHHHHHhhcCCCCCCEEEEEEcCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHP-LAEQQIEAVDKVLSELDVSSIPKLMIWNKVDK 436 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~-~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl 436 (536)
+|..++++||+|-+.+.+..+ .... -+..+...|.|++|-.+--+ ...++...+.+.|........---++++|+|-
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm-~~l~-k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLM-TSLA-KLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred cCCCEEEEeccccccCChhHH-HHHH-HHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccc
Confidence 467899999999876654433 2222 22345678999999776433 34555666666665543222223479999998
Q ss_pred CCChhHHH--HHhccCCCEEEEe
Q 009371 437 VCDPQKVK--LEAQKREDVVCIS 457 (536)
Q Consensus 437 ~~~~~~~~--~~~~~~~~~v~vS 457 (536)
+++.-... .......|++++-
T Consensus 543 v~d~vg~~~~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 543 VDDKVGAAVSMVYITGKPILFVG 565 (587)
T ss_pred hhhHHHHHhhheeecCCceEEEe
Confidence 76542211 1222346777764
No 443
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.66 E-value=0.022 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|+|||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 69999999999999999999863
No 444
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.65 E-value=0.021 Score=55.00 Aligned_cols=23 Identities=48% Similarity=0.742 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|+|||||++.|+|..
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 445
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.64 E-value=0.0022 Score=62.25 Aligned_cols=22 Identities=50% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 446
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.64 E-value=0.0023 Score=61.96 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 447
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.64 E-value=0.029 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999963
No 448
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.0019 Score=67.79 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=29.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc------cccccccccCCeeEEEE
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL------AEDRLFATLDPTTRRVQ 355 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~------~~~~~~~Tld~ttr~i~ 355 (536)
.++++||+|||||||++.|.|.... +.+...+.++|..|.+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ia 78 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIA 78 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEE
Confidence 5999999999999999999997443 23333444555555443
No 449
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0028 Score=61.75 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 450
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0028 Score=62.09 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999986
No 451
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0046 Score=61.96 Aligned_cols=23 Identities=48% Similarity=0.603 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++++|++|||||||++.|.|.-
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcC
Confidence 69999999999999999999863
No 452
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.56 E-value=0.003 Score=61.03 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|+|||||++.|+|.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 453
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.002 Score=63.31 Aligned_cols=24 Identities=46% Similarity=0.704 Sum_probs=21.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.+++|+|++|||||||++.|+|.-
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCcc
Confidence 479999999999999999999963
No 454
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0029 Score=62.59 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 455
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.55 E-value=0.0029 Score=61.61 Aligned_cols=22 Identities=50% Similarity=0.643 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 456
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.55 E-value=0.0031 Score=61.32 Aligned_cols=22 Identities=50% Similarity=0.558 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 457
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0028 Score=62.60 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 458
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.54 E-value=0.0028 Score=61.90 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 459
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0027 Score=61.66 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999986
No 460
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.52 E-value=0.0029 Score=61.84 Aligned_cols=23 Identities=43% Similarity=0.728 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 461
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.51 E-value=0.003 Score=61.80 Aligned_cols=23 Identities=48% Similarity=0.743 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 462
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.51 E-value=0.0065 Score=63.43 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=66.8
Q ss_pred EEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-----------hHHHHHHHHHHHhhc
Q 009371 352 RRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-----------AEQQIEAVDKVLSEL 420 (536)
Q Consensus 352 r~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-----------~~~~~~~v~~vL~~l 420 (536)
..+.+ ++..+.++|+.|.... ... ....+..++++++|+|.++.. ..+....+..++..-
T Consensus 154 ~~f~~-~~~~~~~~DvgGq~~~-----R~k---W~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 154 TKFTI-KNLKFRMFDVGGQRSE-----RKK---WIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred EEEEe-cceEEEEECCCCCccc-----chh---HHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 34444 6778999999998321 111 223456899999999998741 234455556666655
Q ss_pred CCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccC--CCCHHHHHHHHHHHhcc
Q 009371 421 DVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALS--GNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 421 ~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAkt--g~GIdeL~~~I~~~l~~ 477 (536)
...+.|+++++||+|+....- .. .....+ ....+ +..+++..+.|...+..
T Consensus 225 ~~~~~pill~~NK~D~f~~ki--~~--~~l~~~--fp~y~g~~~~~~~~~~~i~~~F~~ 277 (317)
T cd00066 225 WFANTSIILFLNKKDLFEEKI--KK--SPLTDY--FPDYTGPPNDYEEAAKFIRKKFLD 277 (317)
T ss_pred cccCCCEEEEccChHHHHHhh--cC--CCcccc--CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 556899999999999754210 00 000011 11122 24577777777776654
No 463
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0026 Score=61.86 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|+|||||++.|+|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 464
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.51 E-value=0.0017 Score=64.90 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=35.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEE--Eeecccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFL--LTDTVGF 370 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~--LiDTpG~ 370 (536)
..+++|++||||||.++.++|. +.++.+.+.+ +|.++. .-|-.|+
T Consensus 30 i~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~-~g~~~~~~~~~rIGy 76 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITW-NGGPLSQEIKNRIGY 76 (300)
T ss_pred EEEeecCCCCCccchHHHHhcc-----------CCccCceEEE-cCcchhhhhhhhccc
Confidence 6899999999999999999985 5677788887 554432 5556676
No 465
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.51 E-value=0.003 Score=61.97 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
No 466
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.50 E-value=0.0027 Score=62.49 Aligned_cols=36 Identities=42% Similarity=0.760 Sum_probs=27.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCee
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGE 361 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~ 361 (536)
.|.|+|.+|||||||+|.++|. +.++.+.+.+ +|.+
T Consensus 34 FvtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~I-dg~d 69 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILI-DGVD 69 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCc-----------cccCCceEEE-Ccee
Confidence 5999999999999999999986 4455555555 4433
No 467
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.50 E-value=0.003 Score=62.68 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 468
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0033 Score=61.57 Aligned_cols=22 Identities=50% Similarity=0.714 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 469
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.50 E-value=0.0043 Score=61.99 Aligned_cols=50 Identities=36% Similarity=0.565 Sum_probs=36.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeec-ccccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDT-VGFIQKL 374 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDT-pG~i~~l 374 (536)
-.|+|||++|||||||++.|+|. +.|+++.+.. +|.-..+++. .||..++
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v-~G~v~~li~lg~Gf~pel 104 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKV-TGKVAPLIELGAGFDPEL 104 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCc-----------cCCCCceEEE-cceEehhhhcccCCCccc
Confidence 37999999999999999999985 5677888877 5543334443 5664433
No 470
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.49 E-value=0.0031 Score=61.29 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 471
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.49 E-value=0.0033 Score=61.37 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 472
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.48 E-value=0.005 Score=66.84 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=29.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEE
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFL 363 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~ 363 (536)
.-+++|.+|||||||++.|.|. +.|+.+.+.+ +|+.+.
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~-----------~~P~~GeI~v-~G~~v~ 69 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGL-----------YQPDSGEIRV-DGKEVR 69 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCc-----------ccCCcceEEE-CCEEec
Confidence 5799999999999999999996 4455666665 555443
No 473
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.48 E-value=0.0035 Score=59.70 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=31.3
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
|++++|+|+..+........ .+.+. +...++|+|+|+||+|+.+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i-~~~~~-l~~~~kp~IlVlNK~DL~~~~ 46 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQV-EEAVL-QAGGNKKLVLVLNKIDLVPKE 46 (172)
T ss_pred CEEEEEEECCCCCCCCCHHH-HHHHH-hccCCCCEEEEEehhhcCCHH
Confidence 78999999988765433222 22211 223468999999999998654
No 474
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.48 E-value=0.0036 Score=60.36 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=21.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
..++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999963
No 475
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.47 E-value=0.0033 Score=61.95 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 476
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0033 Score=62.23 Aligned_cols=23 Identities=52% Similarity=0.725 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 477
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.46 E-value=0.0034 Score=64.83 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 478
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.45 E-value=0.0034 Score=62.05 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6999999999999999999986
No 479
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.45 E-value=0.0036 Score=61.56 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
..++|+|++|+|||||++.|+|..
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999999963
No 480
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.44 E-value=0.0078 Score=62.07 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=59.0
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH-----HHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK-----LEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~-----~~~~~~~~~v~vSAktg~GI 464 (536)
.+.|-+++|+.+.+|... ...+++.|-.....++.-++|+||+|+.++.+... .......+++.+||+++.|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~--~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN--TNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred cccceEEEEEeccCCCCC--HHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 346667777777776532 23344555555556777888999999998765441 23345678999999999999
Q ss_pred HHHHHHHHHHh
Q 009371 465 DEFCSAVQEKL 475 (536)
Q Consensus 465 deL~~~I~~~l 475 (536)
++|.+++...+
T Consensus 156 ~~l~~~l~~~~ 166 (301)
T COG1162 156 EELAELLAGKI 166 (301)
T ss_pred HHHHHHhcCCe
Confidence 99998887653
No 481
>PRK10908 cell division protein FtsE; Provisional
Probab=96.44 E-value=0.0041 Score=61.03 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=21.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||++.|+|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999986
No 482
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.43 E-value=0.0034 Score=63.27 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 483
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0038 Score=61.96 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 484
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.41 E-value=0.0042 Score=61.59 Aligned_cols=23 Identities=48% Similarity=0.563 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 485
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.41 E-value=0.013 Score=62.00 Aligned_cols=111 Identities=12% Similarity=0.128 Sum_probs=65.8
Q ss_pred EEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-----------hHHHHHHHHHHHhhc
Q 009371 352 RRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-----------AEQQIEAVDKVLSEL 420 (536)
Q Consensus 352 r~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-----------~~~~~~~v~~vL~~l 420 (536)
..+.+ ++..+.++|..|.... ... ....+..++++++|+|+++.. ..+....+..++..-
T Consensus 177 ~~f~~-~~~~~~~~DvgGqr~~-----R~k---W~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 177 TAFIV-KKLFFRMFDVGGQRSE-----RKK---WIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred EEEEE-CCeEEEEEecCCchhh-----hhh---HHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 33444 6778899999998321 111 223457799999999998632 234455556666554
Q ss_pred CCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCC-CCHHHHHHHHHHHhcc
Q 009371 421 DVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSG-NGLDEFCSAVQEKLKD 477 (536)
Q Consensus 421 ~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg-~GIdeL~~~I~~~l~~ 477 (536)
...+.|+++++||.|+....-. ......+ ..-..| ...+.....|...+..
T Consensus 248 ~~~~~piil~~NK~D~~~~Kl~----~~~l~~~--fp~y~g~~~~~~~~~yi~~~F~~ 299 (342)
T smart00275 248 WFANTSIILFLNKIDLFEEKIK----KVPLVDY--FPDYKGPNDYEAAAKFIKQKFLR 299 (342)
T ss_pred cccCCcEEEEEecHHhHHHHhC----CCchhcc--CCCCCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999997532100 0000000 111222 4577777777776653
No 486
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.41 E-value=0.0036 Score=60.27 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999963
No 487
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.40 E-value=0.0041 Score=60.44 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 488
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.39 E-value=0.0061 Score=60.63 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=32.2
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
..+|.++.|+|.|... -...+.+.++-.+++ -+++.+|+||+|-.
T Consensus 154 ~~vD~vivVvDpS~~s-l~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKS-LRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHH-HHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 5789999999988653 233344556666665 36899999999943
No 489
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.38 E-value=0.0041 Score=59.27 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|+|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 490
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.004 Score=63.31 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=21.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||++.|+|.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999986
No 491
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.38 E-value=0.0042 Score=60.22 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=21.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
..++|+|++|||||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999963
No 492
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.37 E-value=0.0085 Score=46.76 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=26.8
Q ss_pred ccceEEEEeCCCcc---hHHHHHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 392 SSLLVHVVDISHPL---AEQQIEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 392 aDliLlVvD~s~~~---~~~~~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
.+++++++|.|... -++|....+++-..+. ++|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~--~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP--NKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT--TS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC--CCCEEEEEeccC
Confidence 57899999998642 3566666666655543 789999999998
No 493
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.36 E-value=0.0045 Score=61.53 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=21.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|+|||||++.|+|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999986
No 494
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.36 E-value=0.0039 Score=63.93 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 495
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.36 E-value=0.0039 Score=61.27 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
..++|+|++|||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 369999999999999999999863
No 496
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.36 E-value=0.0041 Score=60.08 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
..++|+|++|+|||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999863
No 497
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.35 E-value=0.0043 Score=60.15 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 498
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.35 E-value=0.0033 Score=61.15 Aligned_cols=22 Identities=45% Similarity=0.691 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6999999999999999999986
No 499
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.35 E-value=0.0042 Score=64.18 Aligned_cols=22 Identities=45% Similarity=0.703 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++++|++|||||||++.|+|.
T Consensus 33 i~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 500
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.34 E-value=0.0042 Score=63.03 Aligned_cols=22 Identities=50% Similarity=0.705 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6999999999999999999986
Done!