Query 009371
Match_columns 536
No_of_seqs 562 out of 4037
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qtf_A Protein HFLX, GTP-bindi 100.0 1.1E-60 3.7E-65 501.6 28.3 324 147-478 10-355 (364)
2 3gee_A MNME, tRNA modification 99.9 8.1E-24 2.8E-28 229.0 15.3 248 202-476 133-397 (476)
3 1xzp_A Probable tRNA modificat 99.9 2E-22 6.9E-27 218.3 16.9 191 275-476 209-404 (482)
4 2e87_A Hypothetical protein PH 99.9 1.2E-20 4E-25 196.7 22.4 223 250-478 103-337 (357)
5 3geh_A MNME, tRNA modification 99.9 7.9E-22 2.7E-26 212.7 11.4 200 269-478 184-385 (462)
6 2gj8_A MNME, tRNA modification 99.8 7.8E-21 2.7E-25 176.7 13.2 161 313-477 5-166 (172)
7 2dyk_A GTP-binding protein; GT 99.8 3.4E-20 1.2E-24 167.7 15.6 157 313-475 2-160 (161)
8 2wji_A Ferrous iron transport 99.8 1.8E-20 6.2E-25 172.4 14.0 157 313-476 4-164 (165)
9 3tkl_A RAS-related protein RAB 99.8 8.1E-20 2.8E-24 171.0 15.8 159 312-479 16-181 (196)
10 1lnz_A SPO0B-associated GTP-bi 99.8 2E-20 6.7E-25 194.5 12.7 165 312-479 158-332 (342)
11 3iev_A GTP-binding protein ERA 99.8 2.7E-19 9.1E-24 183.0 20.4 163 313-479 11-184 (308)
12 3iby_A Ferrous iron transport 99.8 2.5E-20 8.7E-25 185.9 12.3 155 313-474 2-164 (256)
13 1r2q_A RAS-related protein RAB 99.8 7.5E-20 2.6E-24 166.3 13.6 157 313-477 7-169 (170)
14 4dhe_A Probable GTP-binding pr 99.8 1.1E-19 3.8E-24 174.3 15.4 164 311-478 28-212 (223)
15 1ek0_A Protein (GTP-binding pr 99.8 9E-20 3.1E-24 165.7 13.9 155 313-476 4-168 (170)
16 4a9a_A Ribosome-interacting GT 99.8 1.5E-19 5.2E-24 189.8 17.5 195 279-479 35-302 (376)
17 1z0j_A RAB-22, RAS-related pro 99.8 1.2E-19 4.2E-24 165.1 14.4 156 313-476 7-168 (170)
18 3cph_A RAS-related protein SEC 99.8 1E-19 3.5E-24 172.8 14.0 157 312-477 20-182 (213)
19 1z0f_A RAB14, member RAS oncog 99.8 1.7E-19 5.8E-24 165.6 14.8 156 312-476 15-177 (179)
20 2il1_A RAB12; G-protein, GDP, 99.8 1.7E-19 5.9E-24 170.0 14.7 156 313-477 27-190 (192)
21 2qu8_A Putative nucleolar GTP- 99.8 4.4E-20 1.5E-24 179.1 10.7 185 311-499 28-225 (228)
22 2efe_B Small GTP-binding prote 99.8 2.7E-19 9.2E-24 165.1 15.5 158 313-478 13-176 (181)
23 1g16_A RAS-related protein SEC 99.8 1.1E-19 3.7E-24 165.5 12.3 157 313-478 4-166 (170)
24 1mky_A Probable GTP-binding pr 99.8 1.8E-19 6.2E-24 192.8 15.9 159 313-476 2-165 (439)
25 2bme_A RAB4A, RAS-related prot 99.8 1.6E-19 5.4E-24 167.7 13.2 156 313-477 11-173 (186)
26 3tw8_B RAS-related protein RAB 99.8 1.1E-19 3.9E-24 167.0 12.1 156 312-477 9-171 (181)
27 3q85_A GTP-binding protein REM 99.8 2.4E-19 8.2E-24 163.6 14.0 158 312-477 2-167 (169)
28 2g6b_A RAS-related protein RAB 99.8 3.9E-19 1.3E-23 163.9 15.2 156 313-478 11-175 (180)
29 2y8e_A RAB-protein 6, GH09086P 99.8 1.8E-19 6E-24 165.5 12.9 156 313-477 15-177 (179)
30 2lkc_A Translation initiation 99.8 9.4E-20 3.2E-24 167.7 10.9 155 311-478 7-172 (178)
31 2wjg_A FEOB, ferrous iron tran 99.8 1.8E-19 6.2E-24 167.8 12.7 161 312-479 7-171 (188)
32 1ksh_A ARF-like protein 2; sma 99.8 5.6E-19 1.9E-23 164.4 16.0 154 312-478 18-181 (186)
33 1wf3_A GTP-binding protein; GT 99.8 4.9E-19 1.7E-23 180.8 17.0 162 313-478 8-174 (301)
34 2fu5_C RAS-related protein RAB 99.8 1.3E-19 4.4E-24 168.1 11.4 155 313-477 9-171 (183)
35 2p5s_A RAS and EF-hand domain 99.8 3.2E-19 1.1E-23 168.8 14.3 157 312-477 28-197 (199)
36 3i8s_A Ferrous iron transport 99.8 7E-20 2.4E-24 184.2 10.2 159 313-478 4-170 (274)
37 1z08_A RAS-related protein RAB 99.8 1.5E-19 5.3E-24 164.7 11.6 154 313-476 7-168 (170)
38 2bcg_Y Protein YP2, GTP-bindin 99.8 2.7E-19 9.4E-24 169.7 13.7 157 313-478 9-172 (206)
39 3dz8_A RAS-related protein RAB 99.8 2.6E-19 8.8E-24 168.2 13.3 158 312-478 23-187 (191)
40 1zbd_A Rabphilin-3A; G protein 99.8 4.6E-19 1.6E-23 167.5 14.9 156 313-477 9-171 (203)
41 1wms_A RAB-9, RAB9, RAS-relate 99.8 5.8E-19 2E-23 162.2 15.0 156 313-477 8-174 (177)
42 2nzj_A GTP-binding protein REM 99.8 1E-18 3.6E-23 160.0 16.3 157 312-477 4-169 (175)
43 3bc1_A RAS-related protein RAB 99.8 5.2E-19 1.8E-23 164.3 14.3 157 313-477 12-185 (195)
44 2a5j_A RAS-related protein RAB 99.8 3.5E-19 1.2E-23 167.2 13.3 156 313-477 22-184 (191)
45 1zj6_A ADP-ribosylation factor 99.8 9.3E-19 3.2E-23 163.6 16.0 156 312-479 16-180 (187)
46 2o52_A RAS-related protein RAB 99.8 5.1E-19 1.7E-23 168.0 14.3 155 313-477 26-188 (200)
47 3a1s_A Iron(II) transport prot 99.8 2.2E-19 7.6E-24 179.2 12.4 158 313-477 6-167 (258)
48 1zd9_A ADP-ribosylation factor 99.8 1.3E-18 4.5E-23 163.1 16.9 153 313-477 23-185 (188)
49 1ky3_A GTP-binding protein YPT 99.8 4.9E-19 1.7E-23 162.9 13.7 157 312-477 8-178 (182)
50 2f7s_A C25KG, RAS-related prot 99.8 7.9E-19 2.7E-23 167.9 15.5 153 313-477 26-199 (217)
51 1r8s_A ADP-ribosylation factor 99.8 1E-18 3.5E-23 158.6 15.5 151 314-477 2-162 (164)
52 1u8z_A RAS-related protein RAL 99.8 4.8E-19 1.6E-23 160.3 13.3 155 312-476 4-166 (168)
53 2hxs_A RAB-26, RAS-related pro 99.8 2.2E-19 7.6E-24 165.2 11.2 158 313-478 7-174 (178)
54 1z2a_A RAS-related protein RAB 99.8 1.9E-19 6.3E-24 163.6 10.5 154 313-476 6-166 (168)
55 2hup_A RAS-related protein RAB 99.8 5.5E-19 1.9E-23 168.1 14.2 156 313-477 30-193 (201)
56 2oil_A CATX-8, RAS-related pro 99.8 3.5E-19 1.2E-23 167.1 12.6 157 313-477 26-188 (193)
57 2fg5_A RAB-22B, RAS-related pr 99.8 5.1E-19 1.7E-23 166.5 13.7 158 313-478 24-187 (192)
58 3clv_A RAB5 protein, putative; 99.8 8.3E-19 2.8E-23 163.6 15.0 155 312-477 7-204 (208)
59 1upt_A ARL1, ADP-ribosylation 99.8 5.7E-19 2E-23 161.1 13.4 154 312-477 7-169 (171)
60 1fzq_A ADP-ribosylation factor 99.8 1.2E-18 4.1E-23 162.8 15.9 154 312-477 16-178 (181)
61 3q72_A GTP-binding protein RAD 99.8 5.6E-19 1.9E-23 160.7 13.2 153 312-477 2-164 (166)
62 2erx_A GTP-binding protein DI- 99.8 3.7E-19 1.3E-23 162.0 11.9 156 313-478 4-168 (172)
63 1f6b_A SAR1; gtpases, N-termin 99.8 7E-19 2.4E-23 167.1 14.3 151 312-475 25-197 (198)
64 4dsu_A GTPase KRAS, isoform 2B 99.8 2E-18 6.8E-23 160.1 17.0 156 313-478 5-167 (189)
65 2iwr_A Centaurin gamma 1; ANK 99.8 1.3E-18 4.6E-23 160.5 15.8 148 313-477 8-169 (178)
66 2ew1_A RAS-related protein RAB 99.8 4.7E-19 1.6E-23 169.5 13.0 156 313-478 27-190 (201)
67 4dkx_A RAS-related protein RAB 99.8 4.8E-19 1.6E-23 172.4 13.3 155 313-477 14-176 (216)
68 3pqc_A Probable GTP-binding pr 99.8 3.2E-18 1.1E-22 159.5 18.2 160 311-477 22-194 (195)
69 3cbq_A GTP-binding protein REM 99.8 1.8E-18 6E-23 164.2 16.6 159 312-478 23-189 (195)
70 4bas_A ADP-ribosylation factor 99.8 5.1E-19 1.8E-23 166.0 12.6 157 312-478 17-190 (199)
71 1z06_A RAS-related protein RAB 99.8 1.5E-18 5.1E-23 162.5 15.6 155 312-476 20-187 (189)
72 2h57_A ADP-ribosylation factor 99.8 6.4E-19 2.2E-23 165.1 13.0 156 312-477 21-187 (190)
73 1svi_A GTP-binding protein YSX 99.8 2.9E-18 9.9E-23 160.6 17.3 158 311-476 22-194 (195)
74 3k53_A Ferrous iron transport 99.8 4E-19 1.4E-23 177.8 12.0 162 312-479 3-168 (271)
75 1x3s_A RAS-related protein RAB 99.8 8E-19 2.7E-23 163.8 13.0 158 313-478 16-179 (195)
76 2gf9_A RAS-related protein RAB 99.8 3.1E-19 1E-23 167.1 9.9 157 313-477 23-185 (189)
77 3b1v_A Ferrous iron uptake tra 99.8 2.3E-19 7.7E-24 180.8 9.6 157 313-477 4-164 (272)
78 1c1y_A RAS-related protein RAP 99.8 9.1E-19 3.1E-23 158.9 12.6 155 313-476 4-166 (167)
79 2bov_A RAla, RAS-related prote 99.8 2.4E-18 8.3E-23 162.2 16.0 157 311-477 13-177 (206)
80 2b6h_A ADP-ribosylation factor 99.8 2.5E-18 8.6E-23 162.3 16.1 153 312-477 29-191 (192)
81 2h17_A ADP-ribosylation factor 99.8 7.6E-19 2.6E-23 163.5 12.2 151 312-474 21-180 (181)
82 1kao_A RAP2A; GTP-binding prot 99.8 1.3E-18 4.6E-23 157.2 13.4 154 313-476 4-165 (167)
83 1m2o_B GTP-binding protein SAR 99.8 1E-18 3.5E-23 164.8 13.0 150 313-474 24-189 (190)
84 1moz_A ARL1, ADP-ribosylation 99.8 1.1E-18 3.9E-23 161.4 13.0 154 312-477 18-180 (183)
85 4djt_A GTP-binding nuclear pro 99.8 5.6E-19 1.9E-23 169.1 11.1 157 313-479 12-177 (218)
86 2gf0_A GTP-binding protein DI- 99.8 2.7E-18 9.1E-23 161.1 15.4 158 312-479 8-173 (199)
87 2yc2_C IFT27, small RAB-relate 99.8 4.1E-19 1.4E-23 167.5 9.6 156 313-477 21-192 (208)
88 3cpj_B GTP-binding protein YPT 99.8 5.5E-19 1.9E-23 170.6 10.7 159 313-480 14-179 (223)
89 2fn4_A P23, RAS-related protei 99.8 1.5E-18 5E-23 159.6 12.8 157 312-478 9-173 (181)
90 3kkq_A RAS-related protein M-R 99.8 3.6E-18 1.2E-22 158.3 15.5 155 312-476 18-181 (183)
91 1vg8_A RAS-related protein RAB 99.8 8.6E-19 2.9E-23 165.7 11.4 158 312-477 8-175 (207)
92 2hjg_A GTP-binding protein ENG 99.8 1.4E-18 4.7E-23 185.8 14.0 164 311-479 174-351 (436)
93 2hjg_A GTP-binding protein ENG 99.8 5.5E-19 1.9E-23 188.9 10.8 160 312-477 3-165 (436)
94 2a9k_A RAS-related protein RAL 99.8 3.3E-18 1.1E-22 158.1 14.6 156 312-477 18-181 (187)
95 2ce2_X GTPase HRAS; signaling 99.8 2.8E-18 9.6E-23 154.6 13.7 154 313-476 4-164 (166)
96 4dcu_A GTP-binding protein ENG 99.8 4.2E-18 1.4E-22 183.0 16.9 164 311-479 194-371 (456)
97 3l0i_B RAS-related protein RAB 99.8 5.8E-20 2E-24 173.9 0.9 158 312-478 33-197 (199)
98 3ihw_A Centg3; RAS, centaurin, 99.8 9E-18 3.1E-22 157.6 15.8 150 312-477 20-180 (184)
99 3con_A GTPase NRAS; structural 99.8 9.6E-18 3.3E-22 156.6 15.9 155 313-478 22-184 (190)
100 2atv_A RERG, RAS-like estrogen 99.8 4.7E-18 1.6E-22 160.2 13.2 154 312-477 28-191 (196)
101 3t5g_A GTP-binding protein RHE 99.8 1.8E-18 6.1E-23 160.1 10.1 157 313-479 7-171 (181)
102 2x77_A ADP-ribosylation factor 99.8 7.7E-18 2.6E-22 157.3 14.4 155 312-478 22-185 (189)
103 1mh1_A RAC1; GTP-binding, GTPa 99.8 3.7E-18 1.3E-22 157.8 11.7 155 313-478 6-181 (186)
104 3q3j_B RHO-related GTP-binding 99.7 1.5E-18 5.2E-23 167.0 9.3 158 312-479 27-205 (214)
105 3t1o_A Gliding protein MGLA; G 99.7 5.9E-18 2E-22 157.8 11.9 157 313-478 15-193 (198)
106 3c5c_A RAS-like protein 12; GD 99.7 3.4E-18 1.2E-22 160.6 10.0 153 313-476 22-185 (187)
107 2j1l_A RHO-related GTP-binding 99.7 1.2E-17 4.1E-22 160.3 14.1 154 313-478 35-210 (214)
108 2gco_A H9, RHO-related GTP-bin 99.7 6.6E-18 2.2E-22 160.2 12.1 153 313-476 26-199 (201)
109 2atx_A Small GTP binding prote 99.7 9.6E-18 3.3E-22 157.3 13.1 153 313-476 19-192 (194)
110 3reg_A RHO-like small GTPase; 99.7 3.9E-18 1.3E-22 160.3 10.3 155 313-478 24-189 (194)
111 3bwd_D RAC-like GTP-binding pr 99.7 1.8E-18 6.2E-23 159.6 7.7 154 312-476 8-180 (182)
112 3oes_A GTPase rhebl1; small GT 99.7 1.8E-18 6.1E-23 163.9 7.7 158 312-478 24-188 (201)
113 4gzl_A RAS-related C3 botulinu 99.7 4.7E-18 1.6E-22 162.0 10.0 153 312-475 30-203 (204)
114 2q3h_A RAS homolog gene family 99.7 7.8E-18 2.7E-22 158.8 11.3 155 312-477 20-195 (201)
115 2cxx_A Probable GTP-binding pr 99.7 3.7E-17 1.3E-21 151.9 15.8 158 313-478 2-185 (190)
116 1mky_A Probable GTP-binding pr 99.7 1.2E-17 4E-22 178.8 13.9 164 311-479 179-357 (439)
117 4dcu_A GTP-binding protein ENG 99.7 5.4E-18 1.8E-22 182.2 11.1 161 310-476 21-184 (456)
118 3llu_A RAS-related GTP-binding 99.7 1.1E-17 3.8E-22 158.0 12.0 154 312-475 20-195 (196)
119 2cjw_A GTP-binding protein GEM 99.7 3.3E-17 1.1E-21 155.0 15.0 158 312-477 6-172 (192)
120 2g3y_A GTP-binding protein GEM 99.7 2.9E-17 9.8E-22 159.1 14.9 157 312-476 37-202 (211)
121 2fh5_B SR-beta, signal recogni 99.7 5.3E-17 1.8E-21 154.8 16.1 151 312-474 7-213 (214)
122 3lvq_E ARF-GAP with SH3 domain 99.7 1.6E-17 5.4E-22 179.9 13.6 155 313-479 323-486 (497)
123 2fv8_A H6, RHO-related GTP-bin 99.7 7.5E-18 2.6E-22 160.6 9.5 154 313-477 26-200 (207)
124 2www_A Methylmalonic aciduria 99.7 2.2E-17 7.4E-22 171.9 12.5 183 276-477 26-279 (349)
125 1ega_A Protein (GTP-binding pr 99.7 3.5E-17 1.2E-21 166.8 13.2 160 313-478 9-176 (301)
126 2j0v_A RAC-like GTP-binding pr 99.7 1.5E-17 5E-22 158.5 9.6 156 313-479 10-182 (212)
127 3lxw_A GTPase IMAP family memb 99.7 4.2E-17 1.4E-21 161.4 13.3 165 312-478 21-209 (247)
128 3gj0_A GTP-binding nuclear pro 99.7 9E-18 3.1E-22 161.4 8.1 157 312-479 15-177 (221)
129 3o47_A ADP-ribosylation factor 99.7 7.6E-17 2.6E-21 166.3 15.0 152 313-477 166-327 (329)
130 3r7w_A Gtpase1, GTP-binding pr 99.7 1.2E-16 4.1E-21 163.1 15.6 158 313-475 4-179 (307)
131 1m7b_A RND3/RHOE small GTP-bin 99.7 1.4E-17 4.8E-22 155.3 7.9 154 313-476 8-182 (184)
132 2xtp_A GTPase IMAP family memb 99.7 1.2E-16 4.1E-21 158.0 13.3 164 312-478 22-209 (260)
133 2aka_B Dynamin-1; fusion prote 99.7 1.6E-16 5.6E-21 159.5 14.4 163 309-474 23-250 (299)
134 1wb1_A Translation elongation 99.7 1.8E-16 6.2E-21 171.7 15.3 152 312-476 19-188 (482)
135 2zej_A Dardarin, leucine-rich 99.7 1.8E-16 6E-21 148.3 13.1 154 313-478 3-179 (184)
136 3qq5_A Small GTP-binding prote 99.7 2.3E-17 8E-22 175.9 7.9 160 311-477 33-196 (423)
137 2f9l_A RAB11B, member RAS onco 99.7 2E-16 6.8E-21 149.7 13.2 156 313-477 6-168 (199)
138 1gwn_A RHO-related GTP-binding 99.7 3.1E-17 1.1E-21 157.1 7.7 154 313-476 29-203 (205)
139 3sjy_A Translation initiation 99.7 1.1E-16 3.8E-21 169.3 12.5 157 310-477 6-192 (403)
140 1jwy_B Dynamin A GTPase domain 99.7 1.6E-16 5.4E-21 161.2 13.1 168 309-479 21-264 (315)
141 3t5d_A Septin-7; GTP-binding p 99.7 1.2E-16 4.1E-21 160.1 11.9 160 313-477 9-204 (274)
142 3th5_A RAS-related C3 botulinu 99.5 3E-18 1E-22 162.5 0.0 151 313-475 31-203 (204)
143 2wkq_A NPH1-1, RAS-related C3 99.7 2.3E-16 7.9E-21 159.9 13.1 153 313-476 156-329 (332)
144 3lxx_A GTPase IMAP family memb 99.7 4.1E-16 1.4E-20 152.4 13.9 164 312-477 29-214 (239)
145 1udx_A The GTP-binding protein 99.7 2.8E-16 9.5E-21 167.2 13.5 162 313-479 158-327 (416)
146 1kk1_A EIF2gamma; initiation o 99.7 1.1E-15 3.8E-20 161.9 16.5 155 312-477 10-200 (410)
147 3tr5_A RF-3, peptide chain rel 99.6 2.9E-16 9.8E-21 171.9 11.4 114 313-439 14-149 (528)
148 1oix_A RAS-related protein RAB 99.6 6.1E-16 2.1E-20 145.9 11.5 154 313-475 30-190 (191)
149 3izy_P Translation initiation 99.6 4.9E-18 1.7E-22 185.9 -3.8 153 312-476 4-167 (537)
150 3j2k_7 ERF3, eukaryotic polype 99.6 1.8E-15 6.3E-20 162.0 15.9 146 311-469 16-217 (439)
151 1s0u_A EIF-2-gamma, translatio 99.6 3.2E-15 1.1E-19 158.4 17.2 155 312-477 8-198 (408)
152 3dpu_A RAB family protein; roc 99.6 4.2E-16 1.4E-20 170.6 8.1 155 311-479 40-210 (535)
153 2j69_A Bacterial dynamin-like 99.6 5.2E-15 1.8E-19 167.0 16.5 158 313-478 70-326 (695)
154 2c78_A Elongation factor TU-A; 99.6 2.1E-15 7E-20 159.6 12.0 153 312-477 11-212 (405)
155 3cb4_D GTP-binding protein LEP 99.6 4.1E-15 1.4E-19 164.9 14.2 155 312-478 4-183 (599)
156 2ywe_A GTP-binding protein LEP 99.6 3.3E-15 1.1E-19 165.5 13.4 155 312-478 6-185 (600)
157 2elf_A Protein translation elo 99.6 5E-15 1.7E-19 155.3 13.7 141 314-477 23-180 (370)
158 3c5h_A Glucocorticoid receptor 99.6 3.3E-15 1.1E-19 148.2 10.6 86 391-476 162-254 (255)
159 3zvr_A Dynamin-1; hydrolase, D 99.6 4.5E-15 1.5E-19 167.8 12.8 162 309-473 48-274 (772)
160 1zo1_I IF2, translation initia 99.6 9.6E-17 3.3E-21 174.3 -1.1 150 312-474 4-164 (501)
161 1d2e_A Elongation factor TU (E 99.6 7.6E-15 2.6E-19 155.0 12.8 152 313-477 4-195 (397)
162 3p26_A Elongation factor 1 alp 99.6 4.2E-15 1.5E-19 160.9 11.0 143 312-466 33-227 (483)
163 2x2e_A Dynamin-1; nitration, h 99.6 3.5E-15 1.2E-19 155.1 9.9 161 310-473 29-254 (353)
164 1pui_A ENGB, probable GTP-bind 99.6 2.2E-14 7.6E-19 136.0 14.6 158 313-478 27-200 (210)
165 3izq_1 HBS1P, elongation facto 99.6 2.9E-15 9.9E-20 166.7 9.2 146 310-467 165-362 (611)
166 1wxq_A GTP-binding protein; st 99.6 1.7E-15 6E-20 160.3 6.5 90 314-404 2-114 (397)
167 3t34_A Dynamin-related protein 99.6 1.6E-14 5.6E-19 150.2 13.0 159 310-470 32-254 (360)
168 1g7s_A Translation initiation 99.6 3E-15 1E-19 165.9 7.7 153 312-476 5-217 (594)
169 2p67_A LAO/AO transport system 99.5 1E-14 3.5E-19 151.0 10.2 182 276-476 18-260 (341)
170 1zun_B Sulfate adenylate trans 99.5 2.1E-14 7.3E-19 153.3 12.8 143 312-466 24-213 (434)
171 3p32_A Probable GTPase RV1496/ 99.5 4.7E-15 1.6E-19 154.4 6.5 101 358-477 170-284 (355)
172 1f60_A Elongation factor EEF1A 99.5 2.1E-14 7.3E-19 154.5 7.8 143 312-467 7-202 (458)
173 1nrj_B SR-beta, signal recogni 99.5 2.3E-14 8E-19 136.8 7.2 144 311-463 11-170 (218)
174 3mca_A HBS1, elongation factor 99.5 2E-15 6.9E-20 167.4 -0.5 152 312-476 177-396 (592)
175 1jal_A YCHF protein; nucleotid 99.5 3.3E-13 1.1E-17 141.0 15.6 89 313-403 3-108 (363)
176 3avx_A Elongation factor TS, e 99.5 1.4E-13 4.9E-18 160.2 13.8 153 311-476 295-485 (1289)
177 1dar_A EF-G, elongation factor 99.5 1.8E-13 6E-18 154.4 13.7 115 312-439 12-144 (691)
178 2h5e_A Peptide chain release f 99.5 2.2E-13 7.6E-18 149.1 13.9 114 313-439 14-149 (529)
179 1jny_A EF-1-alpha, elongation 99.5 4.7E-14 1.6E-18 150.7 8.1 144 312-467 6-203 (435)
180 1r5b_A Eukaryotic peptide chai 99.5 4.7E-14 1.6E-18 152.2 8.1 144 312-468 43-243 (467)
181 3r7w_B Gtpase2, GTP-binding pr 99.5 7.3E-14 2.5E-18 143.9 9.1 153 314-475 1-172 (331)
182 2qag_A Septin-2, protein NEDD5 99.5 1.2E-13 4.2E-18 144.2 10.9 158 313-476 38-232 (361)
183 2xex_A Elongation factor G; GT 99.5 1.9E-13 6.5E-18 154.2 13.0 115 312-439 10-142 (693)
184 2dby_A GTP-binding protein; GD 99.5 3.2E-13 1.1E-17 141.5 13.7 88 313-403 2-111 (368)
185 2ged_A SR-beta, signal recogni 99.5 1.1E-13 3.8E-18 129.2 9.0 120 311-439 47-171 (193)
186 3def_A T7I23.11 protein; chlor 99.5 5.8E-13 2E-17 132.4 14.5 125 312-438 36-165 (262)
187 2dy1_A Elongation factor G; tr 99.4 7E-13 2.4E-17 148.9 15.3 112 313-437 10-139 (665)
188 1h65_A Chloroplast outer envel 99.4 1.7E-12 5.7E-17 129.5 16.4 126 312-439 39-169 (270)
189 3vqt_A RF-3, peptide chain rel 99.4 6.6E-13 2.3E-17 146.0 14.6 113 314-439 33-167 (548)
190 2wsm_A Hydrogenase expression/ 99.4 2.2E-13 7.6E-18 130.4 8.0 147 312-477 30-214 (221)
191 2qm8_A GTPase/ATPase; G protei 99.4 8.8E-13 3E-17 136.5 12.9 100 358-476 146-260 (337)
192 2rdo_7 EF-G, elongation factor 99.4 3.1E-12 1.1E-16 144.5 17.4 184 312-533 10-221 (704)
193 1yrb_A ATP(GTP)binding protein 99.4 3.9E-13 1.3E-17 132.2 5.7 163 312-477 14-257 (262)
194 3j25_A Tetracycline resistance 99.3 1.5E-12 5.1E-17 145.6 5.9 151 314-477 4-239 (638)
195 2hf9_A Probable hydrogenase ni 99.3 2.1E-12 7.1E-17 124.1 6.1 54 424-477 164-224 (226)
196 2qpt_A EH domain-containing pr 99.3 9.7E-12 3.3E-16 136.8 11.5 123 311-440 64-234 (550)
197 4fn5_A EF-G 1, elongation fact 99.3 2.2E-11 7.6E-16 137.7 13.4 185 313-534 14-225 (709)
198 2qnr_A Septin-2, protein NEDD5 99.2 4.1E-11 1.4E-15 122.0 11.9 160 313-478 19-215 (301)
199 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.1E-10 3.8E-15 123.1 14.6 88 313-403 21-127 (392)
200 2qag_C Septin-7; cell cycle, c 99.2 3.9E-11 1.3E-15 127.7 10.6 159 313-476 32-226 (418)
201 1n0u_A EF-2, elongation factor 99.1 1E-10 3.4E-15 134.7 7.3 113 313-437 20-163 (842)
202 2ohf_A Protein OLA1, GTP-bindi 99.0 3.3E-10 1.1E-14 119.5 7.5 89 313-403 23-128 (396)
203 2qag_B Septin-6, protein NEDD5 98.8 1.2E-08 4.1E-13 108.5 12.0 122 313-441 43-193 (427)
204 2j37_W Signal recognition part 98.8 3.9E-09 1.3E-13 114.7 7.9 154 312-474 101-310 (504)
205 1tq4_A IIGP1, interferon-induc 98.8 4.3E-08 1.5E-12 104.1 15.2 156 313-479 70-255 (413)
206 3ec1_A YQEH GTPase; atnos1, at 98.7 2E-09 7E-14 112.6 1.8 140 314-464 164-318 (369)
207 4fid_A G protein alpha subunit 98.7 3E-08 1E-12 102.6 9.8 72 358-438 159-242 (340)
208 3h2y_A GTPase family protein; 98.7 4E-09 1.4E-13 110.3 3.1 122 314-439 162-288 (368)
209 3sop_A Neuronal-specific septi 98.6 1E-07 3.5E-12 95.4 10.9 124 313-441 3-157 (270)
210 1cip_A Protein (guanine nucleo 98.6 3.4E-08 1.2E-12 102.8 5.4 116 352-477 186-344 (353)
211 1f5n_A Interferon-induced guan 98.6 9.8E-08 3.4E-12 105.5 9.1 97 311-413 37-142 (592)
212 1zcb_A G alpha I/13; GTP-bindi 98.5 6.9E-08 2.3E-12 100.8 6.7 115 352-476 194-352 (362)
213 3dm5_A SRP54, signal recogniti 98.5 5.5E-07 1.9E-11 96.2 12.4 145 312-466 100-280 (443)
214 1puj_A YLQF, conserved hypothe 98.5 1.4E-07 4.9E-12 95.0 6.2 94 377-476 9-105 (282)
215 1puj_A YLQF, conserved hypothe 98.4 2.7E-07 9.2E-12 93.0 7.2 58 312-373 120-178 (282)
216 3szr_A Interferon-induced GTP- 98.4 2.1E-06 7.1E-11 95.4 15.0 126 309-439 42-229 (608)
217 2v3c_C SRP54, signal recogniti 98.4 4.3E-08 1.5E-12 104.7 0.5 155 313-476 100-310 (432)
218 1u0l_A Probable GTPase ENGC; p 98.3 7.3E-07 2.5E-11 90.4 7.2 100 360-472 63-168 (301)
219 2yv5_A YJEQ protein; hydrolase 98.3 3.9E-07 1.3E-11 92.5 4.6 82 388-472 76-164 (302)
220 3h2y_A GTPase family protein; 98.3 3.1E-06 1.1E-10 88.3 11.2 114 380-499 57-182 (368)
221 1azs_C GS-alpha; complex (lyas 98.3 6.3E-07 2.2E-11 94.7 5.8 115 353-477 211-385 (402)
222 3ec1_A YQEH GTPase; atnos1, at 98.2 2.7E-06 9.4E-11 88.8 9.9 115 380-500 59-185 (369)
223 3ohm_A Guanine nucleotide-bind 98.2 1.2E-06 4.2E-11 90.1 6.4 115 353-477 161-318 (327)
224 3kl4_A SRP54, signal recogniti 98.2 1.3E-06 4.6E-11 93.1 5.9 145 312-466 97-279 (433)
225 2xtz_A Guanine nucleotide-bind 98.1 5.9E-07 2E-11 93.5 2.1 109 359-476 182-344 (354)
226 1j8m_F SRP54, signal recogniti 98.0 3.1E-05 1.1E-09 78.5 12.2 145 313-467 99-281 (297)
227 3cnl_A YLQF, putative uncharac 98.0 3E-06 1E-10 84.3 4.4 57 313-373 100-157 (262)
228 3cnl_A YLQF, putative uncharac 98.0 1.1E-06 3.9E-11 87.5 0.7 92 375-475 5-99 (262)
229 3e70_C DPA, signal recognition 97.9 1.7E-05 5.7E-10 81.7 8.2 145 313-467 130-310 (328)
230 3l82_B F-box only protein 4; T 97.9 1.7E-05 5.7E-10 76.8 7.2 92 387-478 121-224 (227)
231 2yhs_A FTSY, cell division pro 97.8 6.1E-05 2.1E-09 81.4 9.4 145 313-466 294-479 (503)
232 3q5d_A Atlastin-1; G protein, 97.7 0.00011 3.9E-09 78.5 10.5 61 311-372 66-152 (447)
233 2px0_A Flagellar biosynthesis 97.6 4.1E-05 1.4E-09 77.5 5.3 140 313-464 106-278 (296)
234 3l2o_B F-box only protein 4; s 97.6 0.00016 5.3E-09 73.2 9.1 92 387-478 206-309 (312)
235 1rj9_A FTSY, signal recognitio 97.6 0.00036 1.2E-08 70.9 12.0 145 313-466 103-288 (304)
236 1vma_A Cell division protein F 97.6 0.00011 3.9E-09 74.7 8.1 145 313-466 105-290 (306)
237 1t9h_A YLOQ, probable GTPase E 97.5 2.4E-05 8.1E-10 79.8 1.1 81 389-471 84-171 (307)
238 2xxa_A Signal recognition part 97.4 0.0016 5.5E-08 69.3 13.6 118 313-439 101-255 (433)
239 1zu4_A FTSY; GTPase, signal re 97.3 0.0012 4.2E-08 67.4 12.1 100 358-466 190-295 (320)
240 1ls1_A Signal recognition part 97.3 0.00072 2.5E-08 68.2 9.7 144 313-466 99-278 (295)
241 1t9h_A YLOQ, probable GTPase E 97.1 6.3E-05 2.1E-09 76.7 -0.1 24 314-337 175-198 (307)
242 2ffh_A Protein (FFH); SRP54, s 97.1 0.0014 4.9E-08 69.5 10.3 100 358-467 179-279 (425)
243 2rcn_A Probable GTPase ENGC; Y 97.1 0.00026 8.9E-09 73.6 4.5 80 389-471 128-213 (358)
244 3tif_A Uncharacterized ABC tra 97.1 0.00046 1.6E-08 67.3 5.3 36 313-360 32-67 (235)
245 2yv5_A YJEQ protein; hydrolase 97.1 0.00052 1.8E-08 69.4 5.7 23 314-337 167-189 (302)
246 2pcj_A ABC transporter, lipopr 97.0 0.00057 2E-08 66.1 5.1 22 314-335 32-53 (224)
247 2rcn_A Probable GTPase ENGC; Y 97.0 0.0004 1.4E-08 72.2 4.1 24 314-337 217-240 (358)
248 3gfo_A Cobalt import ATP-bindi 97.0 0.00064 2.2E-08 68.0 5.2 36 314-361 36-71 (275)
249 2onk_A Molybdate/tungstate ABC 96.9 0.00071 2.4E-08 66.3 5.3 36 313-360 25-60 (240)
250 1g6h_A High-affinity branched- 96.9 0.00072 2.5E-08 66.7 5.3 35 314-360 35-69 (257)
251 1b0u_A Histidine permease; ABC 96.9 0.00072 2.5E-08 67.0 5.2 22 314-335 34-55 (262)
252 1ji0_A ABC transporter; ATP bi 96.9 0.0008 2.7E-08 65.8 5.3 22 314-335 34-55 (240)
253 1u0l_A Probable GTPase ENGC; p 96.9 0.00053 1.8E-08 69.2 4.0 25 314-338 171-195 (301)
254 4g1u_C Hemin import ATP-bindin 96.8 0.00066 2.2E-08 67.6 4.2 22 314-335 39-60 (266)
255 2olj_A Amino acid ABC transpor 96.8 0.00086 2.9E-08 66.7 5.0 22 314-335 52-73 (263)
256 2ff7_A Alpha-hemolysin translo 96.8 0.00084 2.9E-08 66.0 4.9 22 314-335 37-58 (247)
257 1sgw_A Putative ABC transporte 96.8 0.0012 4E-08 63.7 5.2 22 314-335 37-58 (214)
258 2ixe_A Antigen peptide transpo 96.8 0.001 3.5E-08 66.3 4.9 22 314-335 47-68 (271)
259 2ihy_A ABC transporter, ATP-bi 96.8 0.0011 3.6E-08 66.6 4.9 36 314-361 49-84 (279)
260 1vpl_A ABC transporter, ATP-bi 96.7 0.0013 4.5E-08 65.0 5.6 22 314-335 43-64 (256)
261 2yz2_A Putative ABC transporte 96.7 0.0012 4.1E-08 65.5 5.3 35 314-360 35-69 (266)
262 1mv5_A LMRA, multidrug resista 96.7 0.00083 2.8E-08 65.7 3.8 23 314-336 30-52 (243)
263 3ney_A 55 kDa erythrocyte memb 96.7 0.00045 1.5E-08 65.9 1.7 55 313-370 20-76 (197)
264 2pze_A Cystic fibrosis transme 96.7 0.002 6.9E-08 62.4 6.3 32 314-356 36-67 (229)
265 4dzz_A Plasmid partitioning pr 96.7 0.0021 7.1E-08 59.8 6.1 66 359-436 75-142 (206)
266 3nh6_A ATP-binding cassette SU 96.6 0.00096 3.3E-08 67.8 3.8 35 314-360 82-116 (306)
267 2qi9_C Vitamin B12 import ATP- 96.6 0.0018 6E-08 63.8 5.5 22 314-335 28-49 (249)
268 3tui_C Methionine import ATP-b 96.6 0.0015 5.2E-08 68.0 5.3 22 314-335 56-77 (366)
269 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0017 6E-08 67.4 5.7 22 314-335 32-53 (359)
270 2cbz_A Multidrug resistance-as 96.6 0.0014 4.7E-08 64.0 4.5 22 314-335 33-54 (237)
271 1g29_1 MALK, maltose transport 96.5 0.0028 9.4E-08 66.2 6.1 23 314-336 31-53 (372)
272 3rlf_A Maltose/maltodextrin im 96.5 0.0023 7.7E-08 67.1 5.3 23 314-336 31-53 (381)
273 2yyz_A Sugar ABC transporter, 96.4 0.0024 8.1E-08 66.4 5.3 23 314-336 31-53 (359)
274 1z47_A CYSA, putative ABC-tran 96.4 0.0024 8.2E-08 66.3 5.3 23 314-336 43-65 (355)
275 2it1_A 362AA long hypothetical 96.4 0.0025 8.6E-08 66.3 5.3 23 314-336 31-53 (362)
276 3h4m_A Proteasome-activating n 96.4 0.029 9.9E-07 54.9 12.6 21 314-334 53-73 (285)
277 2pjz_A Hypothetical protein ST 96.4 0.0031 1E-07 62.6 5.5 22 314-335 32-53 (263)
278 1znw_A Guanylate kinase, GMP k 96.4 0.0013 4.4E-08 62.2 2.7 23 314-336 22-44 (207)
279 2ghi_A Transport protein; mult 96.4 0.0027 9.3E-08 62.8 4.9 22 314-335 48-69 (260)
280 1v43_A Sugar-binding transport 96.4 0.0028 9.7E-08 66.1 5.3 23 314-336 39-61 (372)
281 1ye8_A Protein THEP1, hypothet 96.3 0.0014 4.8E-08 61.1 2.7 22 314-335 2-23 (178)
282 1oxx_K GLCV, glucose, ABC tran 96.3 0.0023 7.9E-08 66.3 4.3 22 314-335 33-54 (353)
283 1lvg_A Guanylate kinase, GMP k 96.3 0.0013 4.5E-08 61.9 2.2 22 314-335 6-27 (198)
284 3d31_A Sulfate/molybdate ABC t 96.3 0.0024 8.1E-08 66.1 4.2 22 314-335 28-49 (348)
285 3tr0_A Guanylate kinase, GMP k 96.3 0.0017 5.7E-08 60.5 2.6 23 313-335 8-30 (205)
286 4ido_A Atlastin-1; GTPase, GTP 96.2 0.019 6.4E-07 61.4 10.9 63 311-373 66-153 (457)
287 1kgd_A CASK, peripheral plasma 96.2 0.0018 6.1E-08 59.9 2.7 22 314-335 7-28 (180)
288 2nq2_C Hypothetical ABC transp 96.2 0.0034 1.2E-07 61.8 4.8 22 314-335 33-54 (253)
289 2x8a_A Nuclear valosin-contain 96.2 0.023 7.8E-07 56.4 10.7 21 315-335 47-67 (274)
290 2bbs_A Cystic fibrosis transme 96.2 0.0031 1.1E-07 63.5 4.4 22 314-335 66-87 (290)
291 3a00_A Guanylate kinase, GMP k 96.1 0.0019 6.4E-08 60.0 2.2 22 314-335 3-24 (186)
292 4b4t_L 26S protease subunit RP 96.1 0.053 1.8E-06 57.7 13.5 22 314-335 217-238 (437)
293 1htw_A HI0065; nucleotide-bind 96.1 0.0025 8.6E-08 58.4 2.7 23 314-336 35-57 (158)
294 1zp6_A Hypothetical protein AT 96.1 0.0029 9.8E-08 58.3 3.1 22 314-335 11-32 (191)
295 1z6g_A Guanylate kinase; struc 96.0 0.0021 7.3E-08 61.5 2.2 23 314-336 25-47 (218)
296 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0031 1.1E-07 61.9 3.2 22 314-335 31-52 (250)
297 3c8u_A Fructokinase; YP_612366 96.0 0.0025 8.5E-08 60.2 2.5 23 313-335 23-45 (208)
298 2zu0_C Probable ATP-dependent 96.0 0.0032 1.1E-07 62.5 3.2 22 314-335 48-69 (267)
299 1s96_A Guanylate kinase, GMP k 95.9 0.0029 9.9E-08 61.0 2.6 24 313-336 17-40 (219)
300 4gp7_A Metallophosphoesterase; 95.9 0.0035 1.2E-07 57.5 3.1 21 314-334 11-31 (171)
301 3b85_A Phosphate starvation-in 95.9 0.0025 8.6E-08 61.0 2.2 22 314-335 24-45 (208)
302 3b60_A Lipid A export ATP-bind 95.8 0.0064 2.2E-07 66.9 4.7 35 314-360 371-405 (582)
303 4b4t_K 26S protease regulatory 95.7 0.072 2.5E-06 56.5 12.6 22 314-335 208-229 (428)
304 4a82_A Cystic fibrosis transme 95.7 0.0055 1.9E-07 67.4 4.1 35 314-360 369-403 (578)
305 3asz_A Uridine kinase; cytidin 95.7 0.004 1.4E-07 58.5 2.5 23 313-335 7-29 (211)
306 3b5x_A Lipid A export ATP-bind 95.7 0.0065 2.2E-07 66.8 4.5 22 314-335 371-392 (582)
307 2yl4_A ATP-binding cassette SU 95.7 0.0061 2.1E-07 67.2 4.2 35 314-360 372-406 (595)
308 3qf4_B Uncharacterized ABC tra 95.6 0.0068 2.3E-07 66.9 4.4 35 314-360 383-417 (598)
309 2kjq_A DNAA-related protein; s 95.6 0.014 5E-07 52.5 5.8 23 313-335 37-59 (149)
310 3tqc_A Pantothenate kinase; bi 95.6 0.017 5.7E-07 59.1 6.9 25 311-335 91-115 (321)
311 2eyu_A Twitching motility prot 95.6 0.0047 1.6E-07 61.1 2.6 22 314-335 27-48 (261)
312 4b4t_J 26S protease regulatory 95.6 0.11 3.7E-06 54.8 13.1 21 315-335 185-205 (405)
313 3gd7_A Fusion complex of cysti 95.6 0.0073 2.5E-07 63.4 4.1 23 314-336 49-71 (390)
314 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.26 8.8E-06 49.8 15.5 23 313-335 46-68 (322)
315 2bdt_A BH3686; alpha-beta prot 95.5 0.0056 1.9E-07 56.5 2.7 21 314-334 4-24 (189)
316 3qf4_A ABC transporter, ATP-bi 95.5 0.0078 2.7E-07 66.3 4.2 34 314-359 371-404 (587)
317 3lnc_A Guanylate kinase, GMP k 95.5 0.0045 1.6E-07 59.2 2.1 23 313-335 28-51 (231)
318 3tau_A Guanylate kinase, GMP k 95.5 0.0058 2E-07 57.8 2.7 23 313-335 9-31 (208)
319 2gza_A Type IV secretion syste 95.5 0.008 2.7E-07 62.2 4.0 22 314-335 177-198 (361)
320 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.0073 2.5E-07 61.8 3.6 22 314-335 173-194 (330)
321 2j41_A Guanylate kinase; GMP, 95.4 0.0065 2.2E-07 56.4 2.8 24 313-336 7-30 (207)
322 4b4t_I 26S protease regulatory 95.4 0.096 3.3E-06 55.6 11.9 22 314-335 218-239 (437)
323 4a74_A DNA repair and recombin 95.4 0.0062 2.1E-07 57.4 2.5 22 314-335 27-48 (231)
324 2v9p_A Replication protein E1; 95.4 0.0062 2.1E-07 61.8 2.7 22 314-335 128-149 (305)
325 2i3b_A HCR-ntpase, human cance 95.4 0.0056 1.9E-07 57.6 2.2 22 314-335 3-24 (189)
326 2bbw_A Adenylate kinase 4, AK4 95.3 0.0085 2.9E-07 58.0 3.2 24 313-336 28-54 (246)
327 2ehv_A Hypothetical protein PH 95.3 0.0083 2.8E-07 57.3 3.1 21 314-334 32-52 (251)
328 4eun_A Thermoresistant glucoki 95.3 0.0073 2.5E-07 56.5 2.6 23 313-335 30-52 (200)
329 1kag_A SKI, shikimate kinase I 95.3 0.0066 2.3E-07 54.9 2.2 22 314-335 6-27 (173)
330 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.073 2.5E-06 51.1 9.6 22 313-334 40-61 (262)
331 3cwq_A Para family chromosome 95.2 0.019 6.4E-07 54.4 5.2 66 359-437 67-133 (209)
332 2f1r_A Molybdopterin-guanine d 95.2 0.0046 1.6E-07 57.4 0.8 23 313-335 3-25 (171)
333 3aez_A Pantothenate kinase; tr 95.1 0.0079 2.7E-07 61.1 2.6 23 313-335 91-113 (312)
334 4b4t_M 26S protease regulatory 95.1 0.039 1.3E-06 58.7 7.9 22 314-335 217-238 (434)
335 2jeo_A Uridine-cytidine kinase 95.0 0.0094 3.2E-07 57.7 2.7 23 313-335 26-48 (245)
336 3ec2_A DNA replication protein 95.0 0.018 6.3E-07 52.5 4.5 22 314-335 40-61 (180)
337 1np6_A Molybdopterin-guanine d 95.0 0.011 3.7E-07 55.0 2.9 24 312-335 6-29 (174)
338 1knq_A Gluconate kinase; ALFA/ 94.9 0.011 3.8E-07 53.6 2.6 22 313-334 9-30 (175)
339 3uie_A Adenylyl-sulfate kinase 94.9 0.011 3.8E-07 55.3 2.7 23 313-335 26-48 (200)
340 1nij_A Hypothetical protein YJ 94.8 0.0091 3.1E-07 60.5 2.0 24 312-335 4-27 (318)
341 3lw7_A Adenylate kinase relate 94.8 0.014 4.9E-07 51.9 3.2 20 313-332 2-21 (179)
342 3jvv_A Twitching mobility prot 94.8 0.011 3.7E-07 61.2 2.6 22 314-335 125-146 (356)
343 1sq5_A Pantothenate kinase; P- 94.8 0.039 1.3E-06 55.5 6.6 23 313-335 81-103 (308)
344 3kb2_A SPBC2 prophage-derived 94.8 0.015 5.2E-07 52.0 3.2 22 313-334 2-23 (173)
345 3eie_A Vacuolar protein sortin 94.8 0.13 4.5E-06 51.7 10.5 22 313-334 52-73 (322)
346 1sxj_E Activator 1 40 kDa subu 94.8 0.15 5.3E-06 51.2 11.0 22 313-334 37-58 (354)
347 3ozx_A RNAse L inhibitor; ATP 94.7 0.013 4.6E-07 63.9 3.2 23 314-336 27-49 (538)
348 4f4c_A Multidrug resistance pr 94.7 0.012 4.1E-07 70.8 3.1 35 314-360 1107-1141(1321)
349 1cke_A CK, MSSA, protein (cyti 94.7 0.013 4.4E-07 55.3 2.8 22 313-334 6-27 (227)
350 3end_A Light-independent proto 94.7 0.031 1.1E-06 55.7 5.7 68 359-436 156-225 (307)
351 1lw7_A Transcriptional regulat 94.7 0.011 3.7E-07 61.0 2.2 22 314-335 172-193 (365)
352 2if2_A Dephospho-COA kinase; a 94.7 0.014 4.8E-07 54.3 2.7 22 313-334 2-23 (204)
353 1d2n_A N-ethylmaleimide-sensit 94.7 0.36 1.2E-05 46.9 13.1 22 313-334 65-86 (272)
354 3ozx_A RNAse L inhibitor; ATP 94.7 0.022 7.4E-07 62.2 4.6 25 313-337 295-319 (538)
355 3b9p_A CG5977-PA, isoform A; A 94.6 0.11 3.9E-06 51.0 9.5 23 313-335 55-77 (297)
356 3cf0_A Transitional endoplasmi 94.6 0.14 4.7E-06 51.1 10.1 22 314-335 51-72 (301)
357 4b4t_H 26S protease regulatory 94.6 0.073 2.5E-06 57.0 8.4 22 314-335 245-266 (467)
358 2oap_1 GSPE-2, type II secreti 94.6 0.018 6.3E-07 62.4 3.9 21 315-335 263-283 (511)
359 1jjv_A Dephospho-COA kinase; P 94.6 0.017 5.9E-07 53.9 3.2 22 314-335 4-25 (206)
360 3b9q_A Chloroplast SRP recepto 94.6 0.014 4.7E-07 59.1 2.6 23 313-335 101-123 (302)
361 1yqt_A RNAse L inhibitor; ATP- 94.6 0.016 5.3E-07 63.3 3.2 24 313-336 48-71 (538)
362 3kta_A Chromosome segregation 94.5 0.017 6E-07 52.7 3.0 21 314-334 28-48 (182)
363 2qor_A Guanylate kinase; phosp 94.5 0.016 5.4E-07 54.3 2.8 23 313-335 13-35 (204)
364 2vp4_A Deoxynucleoside kinase; 94.5 0.02 6.9E-07 54.9 3.6 23 313-335 21-43 (230)
365 2ewv_A Twitching motility prot 94.5 0.015 5E-07 60.5 2.7 22 314-335 138-159 (372)
366 1fnn_A CDC6P, cell division co 94.4 0.086 2.9E-06 53.5 8.2 23 313-335 45-67 (389)
367 3hu3_A Transitional endoplasmi 94.4 0.25 8.4E-06 53.2 12.0 21 314-334 240-260 (489)
368 1bif_A 6-phosphofructo-2-kinas 94.4 0.014 4.7E-07 62.4 2.2 22 313-334 40-61 (469)
369 2qp9_X Vacuolar protein sortin 94.3 0.2 6.7E-06 51.4 10.7 22 314-335 86-107 (355)
370 4e22_A Cytidylate kinase; P-lo 94.3 0.025 8.5E-07 55.2 3.7 24 313-336 28-54 (252)
371 3j16_B RLI1P; ribosome recycli 94.3 0.024 8.1E-07 62.9 4.0 25 313-337 104-128 (608)
372 1p9r_A General secretion pathw 94.3 0.017 5.8E-07 61.1 2.6 22 314-335 169-190 (418)
373 3g5u_A MCG1178, multidrug resi 94.3 0.028 9.5E-07 67.5 4.7 22 314-335 418-439 (1284)
374 2qt1_A Nicotinamide riboside k 94.2 0.023 7.9E-07 53.1 3.1 23 313-335 22-44 (207)
375 2npi_A Protein CLP1; CLP1-PCF1 94.2 0.016 5.4E-07 62.1 2.2 24 313-336 139-162 (460)
376 4f4c_A Multidrug resistance pr 94.2 0.03 1E-06 67.5 4.7 22 314-335 446-467 (1321)
377 3kjh_A CO dehydrogenase/acetyl 94.1 0.14 4.9E-06 48.4 8.6 65 358-435 130-194 (254)
378 3t61_A Gluconokinase; PSI-biol 94.1 0.024 8.2E-07 52.8 2.9 22 313-334 19-40 (202)
379 1lv7_A FTSH; alpha/beta domain 94.1 0.049 1.7E-06 52.6 5.3 22 314-335 47-68 (257)
380 3vaa_A Shikimate kinase, SK; s 94.1 0.029 9.8E-07 52.3 3.5 22 313-334 26-47 (199)
381 1ly1_A Polynucleotide kinase; 94.1 0.026 9E-07 50.9 3.1 21 314-334 4-24 (181)
382 2iw3_A Elongation factor 3A; a 94.1 0.033 1.1E-06 64.8 4.7 32 314-356 701-732 (986)
383 3bk7_A ABC transporter ATP-bin 94.1 0.023 7.9E-07 62.9 3.2 24 313-336 118-141 (607)
384 3bfv_A CAPA1, CAPB2, membrane 94.0 0.25 8.6E-06 48.7 10.4 64 361-437 193-257 (271)
385 1yqt_A RNAse L inhibitor; ATP- 94.0 0.031 1.1E-06 60.9 4.1 25 313-337 313-337 (538)
386 3euj_A Chromosome partition pr 94.0 0.021 7.2E-07 61.5 2.7 23 313-335 30-52 (483)
387 3t15_A Ribulose bisphosphate c 94.0 0.21 7.2E-06 49.7 9.9 22 314-335 38-59 (293)
388 3n70_A Transport activator; si 94.0 0.35 1.2E-05 42.5 10.4 22 314-335 26-47 (145)
389 1rz3_A Hypothetical protein rb 94.0 0.023 7.7E-07 53.3 2.5 22 313-334 23-44 (201)
390 1ex7_A Guanylate kinase; subst 94.0 0.026 8.9E-07 53.1 2.9 21 315-335 4-24 (186)
391 3k9g_A PF-32 protein; ssgcid, 93.9 0.16 5.4E-06 49.3 8.7 65 359-435 144-208 (267)
392 1nks_A Adenylate kinase; therm 93.9 0.028 9.5E-07 51.2 2.9 21 314-334 3-23 (194)
393 2og2_A Putative signal recogni 93.9 0.023 8E-07 58.9 2.6 23 313-335 158-180 (359)
394 1ixz_A ATP-dependent metallopr 93.8 0.059 2E-06 52.0 5.3 21 315-335 52-72 (254)
395 2w0m_A SSO2452; RECA, SSPF, un 93.8 0.026 9E-07 52.8 2.7 22 314-335 25-46 (235)
396 3la6_A Tyrosine-protein kinase 93.8 0.2 6.7E-06 50.0 9.2 66 361-438 203-268 (286)
397 1xjc_A MOBB protein homolog; s 93.8 0.034 1.2E-06 51.5 3.3 23 312-334 4-26 (169)
398 2jaq_A Deoxyguanosine kinase; 93.8 0.033 1.1E-06 51.3 3.2 21 314-334 2-22 (205)
399 3bk7_A ABC transporter ATP-bin 93.8 0.036 1.2E-06 61.4 4.0 24 314-337 384-407 (607)
400 3vfd_A Spastin; ATPase, microt 93.8 0.44 1.5E-05 49.1 12.1 22 313-334 149-170 (389)
401 1f2t_A RAD50 ABC-ATPase; DNA d 93.7 0.034 1.2E-06 50.0 3.1 21 313-333 24-44 (149)
402 1qhx_A CPT, protein (chloramph 93.7 0.033 1.1E-06 50.4 3.1 22 313-334 4-25 (178)
403 2ce7_A Cell division protein F 93.6 0.52 1.8E-05 50.6 12.7 22 314-335 51-72 (476)
404 2v1u_A Cell division control p 93.6 0.39 1.3E-05 48.4 11.1 23 313-335 45-67 (387)
405 3syl_A Protein CBBX; photosynt 93.6 0.54 1.8E-05 46.2 11.9 23 312-334 67-89 (309)
406 1odf_A YGR205W, hypothetical 3 93.5 0.076 2.6E-06 53.2 5.6 24 312-335 31-54 (290)
407 3qf7_A RAD50; ABC-ATPase, ATPa 93.5 0.034 1.2E-06 57.5 3.1 21 313-333 24-44 (365)
408 3co5_A Putative two-component 93.5 0.47 1.6E-05 41.7 10.2 21 315-335 30-50 (143)
409 1kht_A Adenylate kinase; phosp 93.5 0.038 1.3E-06 50.3 3.1 22 313-334 4-25 (192)
410 2obl_A ESCN; ATPase, hydrolase 93.5 0.029 9.9E-07 57.8 2.5 22 314-335 73-94 (347)
411 1iy2_A ATP-dependent metallopr 93.5 0.073 2.5E-06 52.2 5.3 21 315-335 76-96 (278)
412 3d8b_A Fidgetin-like protein 1 93.4 0.22 7.7E-06 50.9 9.1 22 313-334 118-139 (357)
413 3trf_A Shikimate kinase, SK; a 93.4 0.044 1.5E-06 50.0 3.4 22 313-334 6-27 (185)
414 3g5u_A MCG1178, multidrug resi 93.4 0.04 1.4E-06 66.1 3.9 22 314-335 1061-1082(1284)
415 3cm0_A Adenylate kinase; ATP-b 93.4 0.041 1.4E-06 50.2 3.1 21 314-334 6-26 (186)
416 1cr0_A DNA primase/helicase; R 93.3 0.033 1.1E-06 55.2 2.5 22 314-335 37-58 (296)
417 2rhm_A Putative kinase; P-loop 93.2 0.042 1.4E-06 50.2 3.0 22 313-334 6-27 (193)
418 3j16_B RLI1P; ribosome recycli 93.2 0.051 1.7E-06 60.2 4.0 25 314-338 380-404 (608)
419 1gtv_A TMK, thymidylate kinase 93.1 0.025 8.6E-07 52.7 1.2 21 314-334 2-22 (214)
420 1ypw_A Transitional endoplasmi 93.0 0.17 5.7E-06 57.9 8.1 23 313-335 239-261 (806)
421 3cio_A ETK, tyrosine-protein k 93.0 0.32 1.1E-05 48.7 9.3 64 361-437 215-279 (299)
422 2yvu_A Probable adenylyl-sulfa 92.9 0.062 2.1E-06 49.2 3.6 23 313-335 14-36 (186)
423 2pez_A Bifunctional 3'-phospho 92.9 0.045 1.5E-06 49.8 2.7 22 313-334 6-27 (179)
424 1via_A Shikimate kinase; struc 92.9 0.049 1.7E-06 49.4 2.8 21 314-334 6-26 (175)
425 2c95_A Adenylate kinase 1; tra 92.8 0.062 2.1E-06 49.2 3.5 22 313-334 10-31 (196)
426 1in4_A RUVB, holliday junction 92.8 0.042 1.4E-06 55.8 2.4 22 314-335 53-74 (334)
427 3cf2_A TER ATPase, transitiona 92.8 0.27 9.1E-06 56.2 9.2 23 313-335 239-261 (806)
428 3iij_A Coilin-interacting nucl 92.8 0.052 1.8E-06 49.4 2.8 21 313-333 12-32 (180)
429 1n0w_A DNA repair protein RAD5 92.8 0.047 1.6E-06 51.7 2.7 21 314-334 26-46 (243)
430 1y63_A LMAJ004144AAA protein; 92.8 0.059 2E-06 49.5 3.2 22 313-334 11-32 (184)
431 2plr_A DTMP kinase, probable t 92.7 0.058 2E-06 49.9 3.1 22 313-334 5-26 (213)
432 2ze6_A Isopentenyl transferase 92.7 0.055 1.9E-06 52.8 3.1 21 314-334 3-23 (253)
433 3fb4_A Adenylate kinase; psych 92.6 0.059 2E-06 50.5 3.1 21 314-334 2-22 (216)
434 2cvh_A DNA repair and recombin 92.6 0.051 1.7E-06 50.6 2.7 21 314-334 22-42 (220)
435 2dpy_A FLII, flagellum-specifi 92.6 0.046 1.6E-06 58.1 2.5 22 314-335 159-180 (438)
436 2p5t_B PEZT; postsegregational 92.6 0.12 4E-06 50.2 5.3 22 313-334 33-54 (253)
437 1tev_A UMP-CMP kinase; ploop, 92.5 0.064 2.2E-06 48.8 3.1 21 314-334 5-25 (196)
438 1qhl_A Protein (cell division 92.5 0.011 3.7E-07 57.4 -2.3 21 315-335 30-50 (227)
439 1aky_A Adenylate kinase; ATP:A 92.4 0.074 2.5E-06 50.2 3.5 22 313-334 5-26 (220)
440 2bwj_A Adenylate kinase 5; pho 92.4 0.067 2.3E-06 49.1 3.1 22 313-334 13-34 (199)
441 2v54_A DTMP kinase, thymidylat 92.4 0.067 2.3E-06 49.4 3.1 23 313-335 5-27 (204)
442 3dl0_A Adenylate kinase; phosp 92.4 0.068 2.3E-06 50.1 3.1 21 314-334 2-22 (216)
443 1uf9_A TT1252 protein; P-loop, 92.4 0.071 2.4E-06 49.1 3.2 23 313-335 9-31 (203)
444 2z0h_A DTMP kinase, thymidylat 92.3 0.07 2.4E-06 48.9 3.1 21 314-334 2-22 (197)
445 2iyv_A Shikimate kinase, SK; t 92.3 0.062 2.1E-06 49.0 2.7 22 313-334 3-24 (184)
446 3a8t_A Adenylate isopentenyltr 92.3 0.2 6.8E-06 51.5 6.7 58 313-370 41-105 (339)
447 1e6c_A Shikimate kinase; phosp 92.2 0.069 2.4E-06 47.9 2.9 21 314-334 4-24 (173)
448 2pbr_A DTMP kinase, thymidylat 92.2 0.074 2.5E-06 48.4 3.1 21 314-334 2-22 (195)
449 2wwf_A Thymidilate kinase, put 92.2 0.071 2.4E-06 49.5 3.0 22 313-334 11-32 (212)
450 3qks_A DNA double-strand break 92.1 0.075 2.6E-06 50.1 3.1 21 313-333 24-44 (203)
451 1zd8_A GTP:AMP phosphotransfer 92.1 0.075 2.6E-06 50.4 3.1 22 313-334 8-29 (227)
452 1ukz_A Uridylate kinase; trans 92.0 0.088 3E-06 48.7 3.4 22 313-334 16-37 (203)
453 3nwj_A ATSK2; P loop, shikimat 92.0 0.06 2E-06 52.9 2.3 21 314-334 50-70 (250)
454 2pt5_A Shikimate kinase, SK; a 92.0 0.083 2.8E-06 47.2 3.1 21 314-334 2-22 (168)
455 1qf9_A UMP/CMP kinase, protein 91.9 0.081 2.8E-06 48.0 3.0 22 313-334 7-28 (194)
456 1zak_A Adenylate kinase; ATP:A 91.9 0.081 2.8E-06 49.9 3.1 22 313-334 6-27 (222)
457 4aby_A DNA repair protein RECN 91.9 0.026 9E-07 58.6 -0.4 21 314-334 62-82 (415)
458 1nn5_A Similar to deoxythymidy 91.9 0.079 2.7E-06 49.2 3.0 22 313-334 10-31 (215)
459 3a4m_A L-seryl-tRNA(SEC) kinas 91.9 0.082 2.8E-06 51.6 3.2 22 313-334 5-26 (260)
460 2cdn_A Adenylate kinase; phosp 91.8 0.085 2.9E-06 48.9 3.1 21 314-334 22-42 (201)
461 1vht_A Dephospho-COA kinase; s 91.8 0.087 3E-06 49.5 3.1 22 313-334 5-26 (218)
462 3eph_A TRNA isopentenyltransfe 91.7 0.16 5.5E-06 53.4 5.4 89 313-401 3-99 (409)
463 2zan_A Vacuolar protein sortin 91.7 0.26 8.8E-06 52.1 7.0 23 313-335 168-190 (444)
464 1svm_A Large T antigen; AAA+ f 91.6 0.074 2.5E-06 55.4 2.7 21 314-334 171-191 (377)
465 1gvn_B Zeta; postsegregational 91.6 0.084 2.9E-06 52.7 2.9 22 313-334 34-55 (287)
466 3exa_A TRNA delta(2)-isopenten 91.6 0.22 7.5E-06 50.8 6.0 60 313-372 4-70 (322)
467 1sxj_A Activator 1 95 kDa subu 91.5 0.41 1.4E-05 51.5 8.5 23 313-335 78-100 (516)
468 1m7g_A Adenylylsulfate kinase; 91.5 0.082 2.8E-06 49.6 2.7 23 313-335 26-48 (211)
469 1l8q_A Chromosomal replication 91.5 0.15 5.2E-06 51.0 4.7 22 314-335 39-60 (324)
470 4fcw_A Chaperone protein CLPB; 91.5 0.54 1.8E-05 46.2 8.7 22 314-335 49-70 (311)
471 1jbk_A CLPB protein; beta barr 91.4 0.11 3.6E-06 46.5 3.2 23 313-335 44-66 (195)
472 2iw3_A Elongation factor 3A; a 91.4 0.075 2.6E-06 61.9 2.7 22 314-335 463-484 (986)
473 1e4v_A Adenylate kinase; trans 91.4 0.096 3.3E-06 49.2 3.0 21 314-334 2-22 (214)
474 1nlf_A Regulatory protein REPA 91.4 0.081 2.8E-06 52.0 2.5 21 314-334 32-52 (279)
475 3qkt_A DNA double-strand break 91.3 0.098 3.4E-06 53.2 3.1 21 313-333 24-44 (339)
476 2vli_A Antibiotic resistance p 91.3 0.076 2.6E-06 48.1 2.1 22 313-334 6-27 (183)
477 3ux8_A Excinuclease ABC, A sub 91.2 0.074 2.5E-06 59.3 2.3 20 314-333 350-369 (670)
478 1e69_A Chromosome segregation 91.1 0.085 2.9E-06 53.3 2.4 20 314-333 26-45 (322)
479 3hr8_A Protein RECA; alpha and 91.1 0.56 1.9E-05 48.4 8.6 21 314-334 63-83 (356)
480 2xb4_A Adenylate kinase; ATP-b 91.0 0.11 3.9E-06 49.3 3.1 21 314-334 2-22 (223)
481 3ake_A Cytidylate kinase; CMP 91.0 0.12 4.2E-06 47.6 3.3 21 314-334 4-24 (208)
482 3pvs_A Replication-associated 90.9 0.89 3E-05 48.2 10.2 23 313-335 51-73 (447)
483 2dhr_A FTSH; AAA+ protein, hex 90.8 0.62 2.1E-05 50.3 9.0 22 314-335 66-87 (499)
484 1w1w_A Structural maintenance 90.7 0.1 3.5E-06 54.9 2.7 22 313-334 27-48 (430)
485 1zuh_A Shikimate kinase; alpha 90.7 0.13 4.6E-06 46.0 3.1 23 312-334 7-29 (168)
486 3r20_A Cytidylate kinase; stru 90.6 0.13 4.6E-06 49.9 3.2 21 313-333 10-30 (233)
487 2z4s_A Chromosomal replication 90.6 0.19 6.6E-06 53.1 4.7 22 314-335 132-153 (440)
488 3u61_B DNA polymerase accessor 90.6 3.1 0.00011 41.1 13.4 44 393-437 105-149 (324)
489 4eaq_A DTMP kinase, thymidylat 90.5 0.13 4.5E-06 49.4 3.1 23 313-335 27-49 (229)
490 3tlx_A Adenylate kinase 2; str 90.4 0.14 4.7E-06 49.5 3.1 22 313-334 30-51 (243)
491 3be4_A Adenylate kinase; malar 90.4 0.13 4.6E-06 48.4 3.0 22 313-334 6-27 (217)
492 3bos_A Putative DNA replicatio 90.3 0.15 5.3E-06 47.6 3.3 22 313-334 53-74 (242)
493 3m6a_A ATP-dependent protease 90.2 0.25 8.4E-06 53.8 5.3 25 311-335 107-131 (543)
494 2o5v_A DNA replication and rep 90.2 0.12 4.1E-06 53.5 2.7 21 314-334 28-48 (359)
495 1ak2_A Adenylate kinase isoenz 90.2 0.17 5.8E-06 48.3 3.5 22 313-334 17-38 (233)
496 3sr0_A Adenylate kinase; phosp 90.2 0.15 5.2E-06 48.4 3.1 21 314-334 2-22 (206)
497 3cr8_A Sulfate adenylyltranfer 90.0 0.09 3.1E-06 57.6 1.5 88 148-247 149-248 (552)
498 1tf7_A KAIC; homohexamer, hexa 89.9 0.12 4.2E-06 55.8 2.5 19 314-332 41-59 (525)
499 2qby_A CDC6 homolog 1, cell di 89.9 0.21 7.2E-06 50.2 4.1 22 314-335 47-68 (386)
500 2w58_A DNAI, primosome compone 89.9 0.17 6E-06 46.6 3.2 23 313-335 55-77 (202)
No 1
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=100.00 E-value=1.1e-60 Score=501.62 Aligned_cols=324 Identities=30% Similarity=0.418 Sum_probs=251.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEEEEEeccCCCCCcccccchHHHHHHHHHHhCCcEEEeCCCCCHHHHHHHHHHhCCCc-ee
Q 009371 147 EESLKELAQLADTAGLMVVGSTHQKLNSPNPRTYIGSGKVAEIKSAIHALGVETVIFDDELSAGQLRNLEKAFGGDV-RV 225 (536)
Q Consensus 147 ~~~l~El~~L~~~~g~~vv~~~~~~~~~~~~~~~~g~Gk~~e~~~~~~~~~~~~vi~~~~Lsp~Q~~nle~~~~~~~-~V 225 (536)
+++|+||++||+|||++||++++|++ +|||+||||+||++||++ +.++|+||||++|||+|.||||++|+ + +|
T Consensus 10 ~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~g~gk~~e~~~---~~~~~~v~~~~~l~p~q~~~l~~~~~--~~~v 83 (364)
T 2qtf_A 10 KEFEEEAIALVEGANYKVTSIYKLPK-SPNVKFYIQYDKLQQIKN---DEEISTLIIFEQLKPRHFINIRRELK--GKEV 83 (364)
T ss_dssp TTTHHHHHHHHHHTTEEEEEEECCCS-SCBTTTBSCHHHHHHHHT---CTTCCEEEESSCCCHHHHHHHHHHHT--TCEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEcc-CCCCcceechhHHHHHhh---ccCCCEEEECCCCCHHHHHHHHHHhC--CCce
Confidence 56899999999999999999999998 999999999999999999 78999999999999999999999996 9 99
Q ss_pred eccchhhhhhhhhccccchhhcc---------cchhhccchhhhhhcCCc-ccCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 009371 226 CDRTALILDIFNQRAATHEAALQ---------LPRLTKMWTHLERQAGGQ-VKGMGEKQIEVDKRILRTQIGVLKKELES 295 (536)
Q Consensus 226 ~DR~~lil~IF~~rA~t~eakLq---------l~rL~~~~~~l~r~~gg~-~~g~GE~~le~drr~i~~ri~~Lk~eL~~ 295 (536)
+||++|||+||++||.|+||++| +|+| +.|.++.++.||. ++|+||++++.+++.++.++..++++++.
T Consensus 84 ~dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~ 162 (364)
T 2qtf_A 84 LDKILLLLEIFALHAGSKEAKMQIELARLKYELPII-KETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELES 162 (364)
T ss_dssp ECHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHC---------------------CHHHHHHHHHHHHHHHHHH
T ss_pred eehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 5788 8899999888774 88999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccch
Q 009371 296 VRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 296 l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp 375 (536)
+...|...+..+.+.+.+.|+|+|++|||||||+|+|++..+.+.+.+++|.+++.+.+.+ +|..+.++||||++...|
T Consensus 163 ~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp 241 (364)
T 2qtf_A 163 IKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIP 241 (364)
T ss_dssp HHC-------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-TTEEEEEEECCCBCSSCC
T ss_pred HHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCC
Confidence 9887777776666667778999999999999999999999887788899999999999988 678899999999999889
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcc--hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH--H------H
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPL--AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV--K------L 445 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~--~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~--~------~ 445 (536)
+.+++.|..++.++..+|++++|+|++++. ...+...+..++..++..++|+|+|+||+|+.+..... . .
T Consensus 242 ~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~ 321 (364)
T 2qtf_A 242 PQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSK 321 (364)
T ss_dssp GGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 999899999999999999999999999886 55666677788888888889999999999998643111 1 1
Q ss_pred Hh-ccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 446 EA-QKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 446 ~~-~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
.. ....+++++||++|.|+++|+++|.+.+...
T Consensus 322 ~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 322 ELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 11 1123689999999999999999999987654
No 2
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=8.1e-24 Score=228.99 Aligned_cols=248 Identities=21% Similarity=0.268 Sum_probs=155.0
Q ss_pred EeCCCCCHHHHHHHHHHhCCCceeeccchhhhhhhhhccccchhhc----c----cchhhccc-hhhhhhcCC--cccCC
Q 009371 202 IFDDELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAAL----Q----LPRLTKMW-THLERQAGG--QVKGM 270 (536)
Q Consensus 202 i~~~~Lsp~Q~~nle~~~~~~~~V~DR~~lil~IF~~rA~t~eakL----q----l~rL~~~~-~~l~r~~gg--~~~g~ 270 (536)
+.|+.|.-+|...+.+.. +|.|..+.- | +++....| ..+.+..+. ..-++
T Consensus 133 flngk~dL~qaEav~dli-------------------~a~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf 193 (476)
T 3gee_A 133 FLNGRIDLLQAEAIGEMI-------------------HARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDF 193 (476)
T ss_dssp HHTTSSCHHHHHHHHHHH-------------------HCCSHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSC
T ss_pred hccCcCcHHHHHHHHHHH-------------------hCCCHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCC
Confidence 668889999998888776 455544332 1 22211112 122222111 12355
Q ss_pred Ccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCcc-ccccccccccC
Q 009371 271 GEKQIE-VDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLD 348 (536)
Q Consensus 271 GE~~le-~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld 348 (536)
.|..++ .+++.+..++..++++++.+...+...+..+.. .+|+|+|++|||||||+|+|++.+. .+.+.+++|.+
T Consensus 194 ~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~---~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d 270 (476)
T 3gee_A 194 SEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEG---VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRD 270 (476)
T ss_dssp CSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---EEEEEECCTTSSHHHHHHHCC----------------
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC---CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEE
Confidence 565665 689999999999999999987766554444432 4699999999999999999999754 35666777777
Q ss_pred CeeEEEEEeCCeeEEEeecccccccchhhHHHH--HHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC
Q 009371 349 PTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAA--FRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP 426 (536)
Q Consensus 349 ~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~--f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p 426 (536)
.....+.+ +|.++.+|||||+.+ +....+. +..+...+..+|++++|+|++++.+..+......++..+. ++|
T Consensus 271 ~~~~~i~~-~g~~l~liDT~G~~~--~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~p 345 (476)
T 3gee_A 271 YIEECFIH-DKTMFRLTDTAGLRE--AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAK 345 (476)
T ss_dssp --CEEEEE-TTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSE
T ss_pred EEEEEEEE-CCeEEEEEECCCCCc--chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCC
Confidence 77777776 788999999999854 2222232 3556667789999999999999876644444555666665 789
Q ss_pred EEEEEEcCCCCCChhHHH--HHhccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 427 KLMIWNKVDKVCDPQKVK--LEAQKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 427 iIvVlNKiDl~~~~~~~~--~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
+++|+||+|+........ .......+++++||++|.|+++|+++|.+.+.
T Consensus 346 iIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 346 FLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999999987643321 11112478999999999999999999999886
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=2e-22 Score=218.34 Aligned_cols=191 Identities=27% Similarity=0.320 Sum_probs=143.2
Q ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeE
Q 009371 275 IE-VDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTR 352 (536)
Q Consensus 275 le-~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr 352 (536)
++ .+++ +..++..++.+|+.+.+.+...+..+. ..+|+|+|+||||||||+|+|++.+. .+.+.+++|.++...
T Consensus 209 i~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~r~---~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~ 284 (482)
T 1xzp_A 209 IETNTGE-VVTRLERIKEKLTEELKKADAGILLNR---GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISE 284 (482)
T ss_dssp CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCE
T ss_pred ccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhccC---CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEE
Confidence 55 5777 999999999999887665544333332 24799999999999999999998764 467788899998888
Q ss_pred EEEEeCCeeEEEeeccccc-ccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEE
Q 009371 353 RVQMKNGGEFLLTDTVGFI-QKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIW 431 (536)
Q Consensus 353 ~i~l~~g~~i~LiDTpG~i-~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVl 431 (536)
.+.+ +|.++.+|||||+. ..........+..++.++..+|++|+|+|++++.+.++.+.+ +.+ .++|+++|+
T Consensus 285 ~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il----~~l--~~~piivV~ 357 (482)
T 1xzp_A 285 EIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL----ERI--KNKRYLVVI 357 (482)
T ss_dssp EEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH----HHH--TTSSEEEEE
T ss_pred EEec-CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH----HHh--cCCCEEEEE
Confidence 8887 78999999999986 322111111235566778999999999999988766554433 222 378999999
Q ss_pred EcCCCCCCh--hHHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 432 NKVDKVCDP--QKVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 432 NKiDl~~~~--~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
||+|+.... +..........+++++||++|.|+++|+++|.+.+.
T Consensus 358 NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 358 NKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred ECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999997542 122222223368999999999999999999998765
No 4
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.86 E-value=1.2e-20 Score=196.66 Aligned_cols=223 Identities=22% Similarity=0.266 Sum_probs=152.4
Q ss_pred chhhccchhhhhhcCCcccCCCcchhhhhHHHHHHHHHHH----HHHHHHHHHHHHHhccccCC-CCCCEEEEEccCCCC
Q 009371 250 PRLTKMWTHLERQAGGQVKGMGEKQIEVDKRILRTQIGVL----KKELESVRKHRKQYRNRRVS-VPVPVVSLVGYTNAG 324 (536)
Q Consensus 250 ~rL~~~~~~l~r~~gg~~~g~GE~~le~drr~i~~ri~~L----k~eL~~l~~~r~~~r~~r~~-~~~~~VaIVG~tnAG 324 (536)
+.....|....+.. -.|+++...+..++.+..++..+ ..++..+...+...+..+.. ...++|+++|++|||
T Consensus 103 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvG 179 (357)
T 2e87_A 103 RIIRELEERYVERI---RYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVG 179 (357)
T ss_dssp HHHHHHHHHHHHHH---HTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSS
T ss_pred HHHHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCC
Confidence 34555665543331 01567778888888888887766 56666677777666655543 456799999999999
Q ss_pred hHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHH-HHHhHHHHHhccceEEEEeCCC
Q 009371 325 KSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAA-FRATLEEISESSLLVHVVDISH 403 (536)
Q Consensus 325 KSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~-f~~tl~ei~~aDliLlVvD~s~ 403 (536)
||||+|+|++..+...+.+++|.+.....+.. ++..+.+|||||+....+...... ..........+|++++|+|+++
T Consensus 180 KSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~ 258 (357)
T 2e87_A 180 KSTLLKALTTAKPEIASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE 258 (357)
T ss_dssp HHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC
T ss_pred HHHHHHHHhCCCCccCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence 99999999998766666677777766666555 577899999999965433221111 1122222346899999999887
Q ss_pred cc--h-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 404 PL--A-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 404 ~~--~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+. . ..+...+..+....+ ++|+++|+||+|+...... .........+++++||++|+|+++|+++|.+.+..
T Consensus 259 ~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 259 HCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 54 2 333333344333332 7899999999999864332 11122345789999999999999999999998864
Q ss_pred c
Q 009371 478 S 478 (536)
Q Consensus 478 ~ 478 (536)
.
T Consensus 337 ~ 337 (357)
T 2e87_A 337 L 337 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=7.9e-22 Score=212.68 Aligned_cols=200 Identities=19% Similarity=0.241 Sum_probs=132.5
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCccc-ccccccccc
Q 009371 269 GMGEKQIEVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATL 347 (536)
Q Consensus 269 g~GE~~le~drr~i~~ri~~Lk~eL~~l~~~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tl 347 (536)
++.|..-+.+++.++.++..+.++++.+...+...+..+.. .+|+++|++|||||||+|+|++.+.. +.+.+++|.
T Consensus 184 Df~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~~---~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~ 260 (462)
T 3geh_A 184 DFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTG---LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTR 260 (462)
T ss_dssp TSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHHC---EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCH
T ss_pred cccccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC---CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeE
Confidence 45553334577788999999999998876555443333322 46999999999999999999987543 455566666
Q ss_pred CCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCE
Q 009371 348 DPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPK 427 (536)
Q Consensus 348 d~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~pi 427 (536)
+.....+.+ +|.++.+|||||+.+.........+..+...+..+|++++|+|++++....... ++..+. .+|+
T Consensus 261 d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~----i~~~l~--~~pi 333 (462)
T 3geh_A 261 DVVESQLVV-GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQE----IYEQVK--HRPL 333 (462)
T ss_dssp HHHHHEEEE-TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHH----HHHHHT--TSCE
T ss_pred EEEEEEEEE-CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHH----HHHhcc--CCcE
Confidence 665566666 889999999999854222222222355666778899999999999987665533 333332 3799
Q ss_pred EEEEEcCCCCCChhHHHH-HhccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 428 LMIWNKVDKVCDPQKVKL-EAQKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 428 IvVlNKiDl~~~~~~~~~-~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
++|+||+|+......... ......+++++||++|.|+++|+++|.+.+...
T Consensus 334 ivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 334 ILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp EEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 999999999765432100 001346899999999999999999999988754
No 6
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=7.8e-21 Score=176.71 Aligned_cols=161 Identities=21% Similarity=0.260 Sum_probs=113.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+|+|++|||||||+|+|++.... +.+.+++|.+.....+.+ ++..+.+|||||+.+.........+..++..+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 47999999999999999999987643 344556666666677766 6788999999998543222111234445567889
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCCCEEEEeccCCCCHHHHHHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKREDVVCISALSGNGLDEFCSAV 471 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~~~v~vSAktg~GIdeL~~~I 471 (536)
+|++++|+|++++.+......+..+ ......++|+++|+||+|+....... ......+++++||++|.|+++++++|
T Consensus 84 ad~~i~v~D~~~~~s~~~~~~~~~~-~~~~~~~~p~ilv~NK~Dl~~~~~~~--~~~~~~~~~~~SA~~g~gv~~l~~~l 160 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDPAEIWPEF-IARLPAKLPITVVRNKADITGETLGM--SEVNGHALIRLSARTGEGVDVLRNHL 160 (172)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHH-HHHSCTTCCEEEEEECHHHHCCCCEE--EEETTEEEEECCTTTCTTHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH-HHhcccCCCEEEEEECccCCcchhhh--hhccCCceEEEeCCCCCCHHHHHHHH
Confidence 9999999999887654333333333 33233478999999999985431110 11124578999999999999999999
Q ss_pred HHHhcc
Q 009371 472 QEKLKD 477 (536)
Q Consensus 472 ~~~l~~ 477 (536)
.+.+..
T Consensus 161 ~~~~~~ 166 (172)
T 2gj8_A 161 KQSMGF 166 (172)
T ss_dssp HHHC--
T ss_pred HHHhhh
Confidence 887753
No 7
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=3.4e-20 Score=167.67 Aligned_cols=157 Identities=25% Similarity=0.246 Sum_probs=106.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
++|+++|.+|||||||+|+|.+.... ....+..+.+.....+.. ++..+.+|||||+..... ............+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK-WEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSSS-CCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCccc-hHHHHHHHHHHHHHh
Confidence 57999999999999999999987643 334444555665566665 677899999999854221 111112223445688
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhccCC-CEEEEeccCCCCHHHHHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQKRE-DVVCISALSGNGLDEFCSA 470 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~~~~-~~v~vSAktg~GIdeL~~~ 470 (536)
+|++++|+|++++...... .+..++.. .+.|+++|+||+|+....+.......... +++++||++|.|+++++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 155 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADY-EVAEYLRR---KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEA 155 (161)
T ss_dssp CSEEEEEEESSSCCCHHHH-HHHHHHHH---HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHH
T ss_pred CCEEEEEEECCCcccHhHH-HHHHHHHh---cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHH
Confidence 9999999999987654432 23344444 36899999999999765332222222333 7999999999999999999
Q ss_pred HHHHh
Q 009371 471 VQEKL 475 (536)
Q Consensus 471 I~~~l 475 (536)
|.+.+
T Consensus 156 l~~~l 160 (161)
T 2dyk_A 156 IWERL 160 (161)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98765
No 8
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.84 E-value=1.8e-20 Score=172.45 Aligned_cols=157 Identities=25% Similarity=0.271 Sum_probs=105.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.+|+++|++|||||||+|+|++..+.....++.|.+.....+.+ ++..+.+|||||+.+..+....+.+.........+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 47999999999999999999997765555566667766666666 67889999999986543222222222222122479
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHHhccCCCEEEEeccCCCCHHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLEAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
|++++|+|+++... ....+.. +.. .+.|+++|+||+|+.... +..........+++++||++|.|+++++
T Consensus 83 ~~~i~v~D~~~~~~--~~~~~~~-~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 83 DLVVNIVDATALER--NLYLTLQ-LME---MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELK 156 (165)
T ss_dssp SEEEEEEETTCHHH--HHHHHHH-HHH---TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHH
T ss_pred CEEEEEecCCchhH--hHHHHHH-HHh---cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHH
Confidence 99999999987421 1112222 222 378999999999975321 1111222234689999999999999999
Q ss_pred HHHHHHhc
Q 009371 469 SAVQEKLK 476 (536)
Q Consensus 469 ~~I~~~l~ 476 (536)
++|.+.+.
T Consensus 157 ~~l~~~~~ 164 (165)
T 2wji_A 157 KAISIAVK 164 (165)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99988763
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.83 E-value=8.1e-20 Score=171.02 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=114.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||...... .....+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 86 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT--------ITSSYY 86 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT--------THHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh--------hHHHHH
Confidence 357999999999999999999987665444444444444455555 44 4688999999732111 122346
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+..... ..........+++++||++|.|+
T Consensus 87 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 87 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 166 (196)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTH
T ss_pred hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence 7899999999999976655555555555555556789999999999976421 12222334578999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 009371 465 DEFCSAVQEKLKDSM 479 (536)
Q Consensus 465 deL~~~I~~~l~~~~ 479 (536)
++++++|.+.+....
T Consensus 167 ~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 167 EQSFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 10
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.83 E-value=2e-20 Score=194.52 Aligned_cols=165 Identities=28% Similarity=0.404 Sum_probs=127.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccch--hhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP--TTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp--~~l~e~f~~tl~ei 389 (536)
++.|+|+|++|||||||+|+|++..+.+.+++++|+.++.+.+.+.++..+.+|||||++.... ..+. ...+..+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~---~~fl~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLG---HQFLRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTH---HHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhH---HHHHHHH
Confidence 4579999999999999999999988777888999999999988885558999999999864221 1122 2235567
Q ss_pred HhccceEEEEeCCC---cchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHHHHHhc-c--CCCEEEEeccCC
Q 009371 390 SESSLLVHVVDISH---PLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKVKLEAQ-K--REDVVCISALSG 461 (536)
Q Consensus 390 ~~aDliLlVvD~s~---~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~~~~~~-~--~~~~v~vSAktg 461 (536)
..+|++++|+|+++ ....++...+...+..+. ..++|+++|+||+|+....+....... . ..+++++||+++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCC
Confidence 78999999999987 555566666666666554 357999999999999865433222221 1 257999999999
Q ss_pred CCHHHHHHHHHHHhcccc
Q 009371 462 NGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~~~ 479 (536)
.|+++|+++|.+.+....
T Consensus 315 ~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTP 332 (342)
T ss_dssp STTHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHhhCc
Confidence 999999999999987653
No 11
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=2.7e-19 Score=183.00 Aligned_cols=163 Identities=23% Similarity=0.321 Sum_probs=118.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc-ccccccccCCeeEEEEEeC-CeeEEEeecccccccch-hhHHHHH-HHhHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLP-TTLVAAF-RATLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp-~~l~e~f-~~tl~e 388 (536)
..|+++|.+|||||||+|+|+|..+.. ...+.+|.......... + +..+.+|||||+.+... ..+.+.+ ..+...
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~ 89 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS 89 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence 479999999999999999999987653 44455555554454444 5 88999999999965321 2222333 335566
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC-CChhH---HHHHh--c-cCCCEEEEeccCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV-CDPQK---VKLEA--Q-KREDVVCISALSG 461 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~-~~~~~---~~~~~--~-~~~~~v~vSAktg 461 (536)
+..+|++++|+|++++....+...+...+.. .+.|+++|+||+|+. +.... ..... . ...+++++||++|
T Consensus 90 l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g 166 (308)
T 3iev_A 90 LEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKG 166 (308)
T ss_dssp HHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTT
T ss_pred hhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCC
Confidence 7899999999999998777666553444444 478999999999998 33221 11111 1 3478999999999
Q ss_pred CCHHHHHHHHHHHhcccc
Q 009371 462 NGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~~~ 479 (536)
.|+++|+++|.+.+....
T Consensus 167 ~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 167 ANLDELVKTILKYLPEGE 184 (308)
T ss_dssp BSHHHHHHHHHHHSCBCC
T ss_pred CCHHHHHHHHHHhCccCC
Confidence 999999999999997653
No 12
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=2.5e-20 Score=185.90 Aligned_cols=155 Identities=21% Similarity=0.185 Sum_probs=113.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchh----hHHHHHHHhHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT----TLVAAFRATLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~----~l~e~f~~tl~e 388 (536)
++|+++|.+|||||||+|+|+|....+.+.++.|.+...+.+.+ ++..+.+|||||+.+..+. ...+.+......
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 67999999999999999999999877777787787777777776 7789999999999765442 222333332222
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HHHHHhccCCCEEEEeccCCCCH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
...+|++++|+|+++.. ... . +...+...++|+++|+||+|+..... ........+.+++++||++|.|+
T Consensus 81 ~~~~d~vi~VvDas~~~--~~~-~---l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 81 DLEYDCIINVIDACHLE--RHL-Y---LTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HSCCSEEEEEEEGGGHH--HHH-H---HHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hCCCCEEEEEeeCCCch--hHH-H---HHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 36899999999998742 222 2 22233334789999999999864321 11222234679999999999999
Q ss_pred HHHHHHHHHH
Q 009371 465 DEFCSAVQEK 474 (536)
Q Consensus 465 deL~~~I~~~ 474 (536)
++|+++|.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999887
No 13
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=7.5e-20 Score=166.27 Aligned_cols=157 Identities=18% Similarity=0.098 Sum_probs=104.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|.+|||||||+|+|++..+........+.+.....+.+.+ +..+.+|||||..+.. ......+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~ 78 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH--------SLAPMYYRG 78 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh--------hhhHHhccC
Confidence 4799999999999999999997654322222111222223333322 3478899999973211 112234678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +..........+++++||++|.|+++
T Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 9999999999987655544444333444344578999999999986421 11122223456899999999999999
Q ss_pred HHHHHHHHhcc
Q 009371 467 FCSAVQEKLKD 477 (536)
Q Consensus 467 L~~~I~~~l~~ 477 (536)
++++|.+.+..
T Consensus 159 l~~~i~~~~~~ 169 (170)
T 1r2q_A 159 IFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 14
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.82 E-value=1.1e-19 Score=174.31 Aligned_cols=164 Identities=21% Similarity=0.238 Sum_probs=109.3
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCcc--ccccccccccCCeeEEEEEeCCeeEEEeecccccccc-hhhHHHHHH----
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATV--LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKL-PTTLVAAFR---- 383 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~--~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~l-p~~l~e~f~---- 383 (536)
..++|+|+|.+|||||||+|+|++... .....+.+|.+.....+...++..+.+|||||+.... +....+.|.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 457899999999999999999998762 2333333443333333332356789999999985421 111122222
Q ss_pred HhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH---H----HHh-------cc
Q 009371 384 ATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV---K----LEA-------QK 449 (536)
Q Consensus 384 ~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~---~----~~~-------~~ 449 (536)
..+.....+|++++|+|++++....+...+ ..+.. .++|+++|+||+|+....... . ... ..
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~-~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMI-EWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAG 183 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHH-HHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCC
Confidence 233334448889999999987665544433 33333 478999999999998754311 0 111 14
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 450 REDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 450 ~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
..+++++||++|.|+++|+++|.+.+...
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 56899999999999999999999988754
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=9e-20 Score=165.73 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=105.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||..... ......+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 74 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA--------SLAPXYYR 74 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG--------GGHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhh--------hhhhhhhc
Confidence 46999999999999999999987654333232223333344444 33 378899999973211 11223467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-------h-HHHHHhccCCCEEEEeccCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-------Q-KVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-------~-~~~~~~~~~~~~v~vSAktg~ 462 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... . ..........+++++||++|.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 75 NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 89999999999987665554444333333334578999999999986531 1 111122345689999999999
Q ss_pred CHHHHHHHHHHHhc
Q 009371 463 GLDEFCSAVQEKLK 476 (536)
Q Consensus 463 GIdeL~~~I~~~l~ 476 (536)
|+++++++|.+.+.
T Consensus 155 gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 155 NVNDVFLGIGEKIP 168 (170)
T ss_dssp THHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987664
No 16
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.5e-19 Score=189.82 Aligned_cols=195 Identities=22% Similarity=0.265 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEE
Q 009371 279 KRILRTQIGVLKKELESVRKHRKQYRNRR----VSVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRV 354 (536)
Q Consensus 279 rr~i~~ri~~Lk~eL~~l~~~r~~~r~~r----~~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i 354 (536)
...++.|+++|+++|......+...+..+ .+.+...|+|||+||||||||+|+|++....+.+++|+|+++..+.+
T Consensus 35 ~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~ 114 (376)
T 4a9a_A 35 LGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI 114 (376)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE
Confidence 45789999999999987655554433322 24456789999999999999999999999889999999999999988
Q ss_pred EEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEE
Q 009371 355 QMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWN 432 (536)
Q Consensus 355 ~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlN 432 (536)
.+ .+.++.++||||++... .........++..+..||++++|+|+++|.. +.+.+...|...+ ...+|.++++|
T Consensus 115 ~~-~~~~i~l~D~pGl~~~a-~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 115 RY-KGAKIQMLDLPGIIDGA-KDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp EE-TTEEEEEEECGGGCCC------CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred Ee-CCcEEEEEeCCCccCCc-hhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhh
Confidence 87 78899999999998653 3333345677888999999999999998743 3333443344332 23556667777
Q ss_pred cCCCCC-------------------------------------------------------------------ChhHHHH
Q 009371 433 KVDKVC-------------------------------------------------------------------DPQKVKL 445 (536)
Q Consensus 433 KiDl~~-------------------------------------------------------------------~~~~~~~ 445 (536)
|+|... ..+. .
T Consensus 191 K~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~~eel--e 268 (376)
T 4a9a_A 191 KKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEEL--E 268 (376)
T ss_dssp ECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCHHHH--H
T ss_pred HhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccCHHHH--H
Confidence 776421 1000 0
Q ss_pred HhccCCCEEEEeccCCCCHHHHHHHHHHHhcccc
Q 009371 446 EAQKREDVVCISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 446 ~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
.......++++|+..+.|++.|.+.+.+.|.-..
T Consensus 269 ~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~ 302 (376)
T 4a9a_A 269 LLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVR 302 (376)
T ss_dssp HHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEE
T ss_pred HHhcccchhhhhhhhcccchhHHHHHHHHcCCcE
Confidence 0112346889999999999999999999987543
No 17
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=1.2e-19 Score=165.12 Aligned_cols=156 Identities=20% Similarity=0.138 Sum_probs=107.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|++|||||||+|+|++..+.....+....+.....+.+.+ +..+.+|||||+.... ......+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~~ 78 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR--------ALAPMYYRG 78 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGTHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh--------cccHhhCcC
Confidence 4799999999999999999998764322222111122223333421 2478899999983211 112334678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++.+......+...+...+....|+++|+||+|+..... . .........+++++||++|.|+++
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 79 SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININE 158 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 99999999999987666655555555555566889999999999975321 1 112223457899999999999999
Q ss_pred HHHHHHHHhc
Q 009371 467 FCSAVQEKLK 476 (536)
Q Consensus 467 L~~~I~~~l~ 476 (536)
++++|.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 18
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=1e-19 Score=172.84 Aligned_cols=157 Identities=19% Similarity=0.166 Sum_probs=109.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
.++|+|+|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||..... ......+
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 90 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFR--------TITTAYY 90 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGT--------CCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH--------HHHHHHh
Confidence 468999999999999999999987654433333344444455555 55 478899999973211 1123456
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh---hH-HHHHhccCCCEEEEeccCCCCHH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP---QK-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~---~~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
..+|++++|+|++++........+...+......+.|+++|+||+|+.... .. .........+++++||++|.|++
T Consensus 91 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 91 RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 789999999999987655444444444444334478999999999995321 11 11222235689999999999999
Q ss_pred HHHHHHHHHhcc
Q 009371 466 EFCSAVQEKLKD 477 (536)
Q Consensus 466 eL~~~I~~~l~~ 477 (536)
+++++|.+.+..
T Consensus 171 ~l~~~l~~~~~~ 182 (213)
T 3cph_A 171 EIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 19
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.81 E-value=1.7e-19 Score=165.59 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=108.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++..+........+.+.....+.+ ++ ..+.+|||||..... ......+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 85 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR--------AVTRSYY 85 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC--------HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhh--------hhHHHHh
Confidence 358999999999999999999987653322222222223344444 33 368899999973211 1123446
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +. .........+++++||++|.|+
T Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENV 165 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 789999999999988665555544444555444678999999999996421 11 1222234578999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++++|.+.+.
T Consensus 166 ~~l~~~l~~~i~ 177 (179)
T 1z0f_A 166 EDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 20
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=169.96 Aligned_cols=156 Identities=20% Similarity=0.182 Sum_probs=107.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||.... .......+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~--------~~~~~~~~~ 97 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF--------NSITSAYYR 97 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG--------HHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH--------HHHHHHHhc
Confidence 47999999999999999999987654333333333334444555 44 36889999997321 111334567
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHHh-c-cCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLEA-Q-KREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~~-~-~~~~~v~vSAktg~GI 464 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +...... . ...+++++||++|.|+
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 89999999999998766665555555666555689999999999986531 1111222 2 3568999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
++++++|.+.+..
T Consensus 178 ~~l~~~l~~~i~~ 190 (192)
T 2il1_A 178 DEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.81 E-value=4.4e-20 Score=179.12 Aligned_cols=185 Identities=17% Similarity=0.207 Sum_probs=113.1
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhH-HHHHHHhHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTL-VAAFRATLEEI 389 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l-~e~f~~tl~ei 389 (536)
..++|+|+|.+|||||||+|+|++..+...+..++|.+.....+.. ++..+.+|||||+.+...... ...+......+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 3468999999999999999999998765444444454444444444 567899999999954211111 00112222235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCC--CCCCEEEEEEcCCCCCChhH-------HHHHhc-cC--CCEEEEe
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDV--SSIPKLMIWNKVDKVCDPQK-------VKLEAQ-KR--EDVVCIS 457 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~--~~~piIvVlNKiDl~~~~~~-------~~~~~~-~~--~~~v~vS 457 (536)
..+|++++|+|++++.+.. ......++..+.. .+.|+++|+||+|+...... ...... .. .+++++|
T Consensus 107 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLT-IKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS 185 (228)
T ss_dssp TSSEEEEEEEETTCTTSSC-HHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred ccccEEEEEEecccccCcc-hHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 6789999999998875421 1111223333322 37899999999999764221 111111 22 6899999
Q ss_pred ccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHH
Q 009371 458 ALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQ 499 (536)
Q Consensus 458 Aktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~ 499 (536)
|++|.|+++++++|.+.+...... ..++...+.++.+++.
T Consensus 186 A~~g~gi~~l~~~l~~~i~~~~~~--~~~~~~~~~~~~~~~~ 225 (228)
T 2qu8_A 186 TLTGVGVEQAKITACELLKNDQAE--SILLDQEQLLNTKLGE 225 (228)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC--
T ss_pred cccCCCHHHHHHHHHHHHHHHHHH--HHHhhhhhhhcccccc
Confidence 999999999999999988654322 1234334555555443
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.81 E-value=2.7e-19 Score=165.10 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=107.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|.+|||||||+|+|++..+........+.+.....+.+.+ +..+.+|||||..... ......+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~ 84 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMYYRG 84 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG--------GGTHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh--------hhhHHHhcc
Confidence 5799999999999999999998765433222222333334444422 2478899999973211 112334678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HH-HHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KV-KLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~-~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++.+......+...+......+.|+++|+||+|+..... .. ........+++++||++|.|+++
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 99999999999876655544444444444445789999999999975321 11 12223456899999999999999
Q ss_pred HHHHHHHHhccc
Q 009371 467 FCSAVQEKLKDS 478 (536)
Q Consensus 467 L~~~I~~~l~~~ 478 (536)
++++|.+.+...
T Consensus 165 l~~~l~~~~~~~ 176 (181)
T 2efe_B 165 IFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhc
Confidence 999999877653
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.81 E-value=1.1e-19 Score=165.48 Aligned_cols=157 Identities=19% Similarity=0.154 Sum_probs=105.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||...... .....+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 74 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRT--------ITTAYYR 74 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSC--------CCHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhh--------hHHHHhc
Confidence 46999999999999999999987654333333333333444444 33 3688999999732111 1233467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh---h-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP---Q-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~---~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... + ..........+++++||++|.|+++
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 75 GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 154 (170)
T ss_dssp TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 89999999999987655544444444444444578999999999995421 1 1112223356899999999999999
Q ss_pred HHHHHHHHhccc
Q 009371 467 FCSAVQEKLKDS 478 (536)
Q Consensus 467 L~~~I~~~l~~~ 478 (536)
++++|.+.+...
T Consensus 155 l~~~l~~~~~~~ 166 (170)
T 1g16_A 155 IFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 24
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=1.8e-19 Score=192.78 Aligned_cols=159 Identities=26% Similarity=0.361 Sum_probs=109.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH-HHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF-RATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f-~~tl~ei~ 390 (536)
|+|+|+|.+|||||||+|+|++.... +.+.++.|.+.....+.+ +|..+.+|||||+...........+ ..+...+.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 68999999999999999999988654 567778888888887777 7889999999998643222122223 33556788
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC-hhHH-HHHhccC-CCEEEEeccCCCCHHHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD-PQKV-KLEAQKR-EDVVCISALSGNGLDEF 467 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~-~~~~-~~~~~~~-~~~v~vSAktg~GIdeL 467 (536)
.||++++|+|++.+.+..+.. +..++.. .++|+++|+||+|+... .... ....... .+++++||++|.|+++|
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~-i~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDES-LADFLRK---STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHH-HHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence 999999999998877655433 3445554 36899999999998543 1111 1222222 37899999999999999
Q ss_pred HHHHHHHhc
Q 009371 468 CSAVQEKLK 476 (536)
Q Consensus 468 ~~~I~~~l~ 476 (536)
+++|.+.+.
T Consensus 157 ~~~i~~~l~ 165 (439)
T 1mky_A 157 LETIIKKLE 165 (439)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999988775
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.81 E-value=1.6e-19 Score=167.67 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=109.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||.... .......+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 81 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF--------RSVTRSYYR 81 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG--------HHHHHTTST
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH--------HHHHHHHHh
Confidence 57999999999999999999987654433333333333444444 44 47889999997321 111233467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +..........+++++||++|.|++
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 161 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 89999999999987665554444444444444678999999999986421 1112222345789999999999999
Q ss_pred HHHHHHHHHhcc
Q 009371 466 EFCSAVQEKLKD 477 (536)
Q Consensus 466 eL~~~I~~~l~~ 477 (536)
+++++|.+.+..
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 26
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=167.04 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=107.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
.++|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||...... .....+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 79 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT--------ITSTYY 79 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS--------CCGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh--------hHHHHh
Confidence 468999999999999999999987765444444444444555555 55 4688999999632111 112235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+... ..+.|+++|+||+|+.... ...........+++++||++|.|+
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 80 RGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNV 158 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 7799999999999976655544333333332 2468999999999986532 112222334578999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
++++++|.+.+..
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 27
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.81 E-value=2.4e-19 Score=163.60 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=101.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++...........+.+.....+.+ ++ ..+.+|||||...... .+ ....+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~--~~~~~ 73 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-----WL--QDHCL 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC---------------CHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-----hh--hhhhh
Confidence 357999999999999999999976554444444444545555555 44 3677999999832110 01 11235
Q ss_pred HhccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+......+ ..+.......+.|+++|+||+|+.... ...........+++++||++|.|
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 153 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCC
Confidence 679999999999987654444333 333333333478999999999986421 11122233457899999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009371 464 LDEFCSAVQEKLKD 477 (536)
Q Consensus 464 IdeL~~~I~~~l~~ 477 (536)
+++++++|.+.+..
T Consensus 154 v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 154 TRELFEGAVRQIRL 167 (169)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.9e-19 Score=163.88 Aligned_cols=156 Identities=24% Similarity=0.275 Sum_probs=105.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccc-ccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAED-RLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~-~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.+|+++|.+|||||||+|+|++..+.... .+..+.+.....+.+ ++. .+.+|||||... +.. ....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~---------~~~~~~~~ 80 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER---------FRSVTHAY 80 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------CC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH---------HHHHHHHH
Confidence 57999999999999999999987653221 121222222223333 443 688999999722 221 2334
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
+..+|++++|+|++++.+......+...+......+.|+++|+||+|+..... ..........+++++||++|.|
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 81 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160 (180)
T ss_dssp GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 67899999999999876655544444444444336789999999999976421 1122223456899999999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
+++++++|.+.+...
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888654
No 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.80 E-value=1.8e-19 Score=165.47 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=106.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||..... ......+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~ 85 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR--------SLIPSYIR 85 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG--------GGSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH--------HHHHHHhc
Confidence 57999999999999999999976654333333333444445555 44 378899999973211 11223467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+..... ..........+++++||++|.|++
T Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 86 DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 899999999999876544443333333332235789999999999864321 112222345789999999999999
Q ss_pred HHHHHHHHHhcc
Q 009371 466 EFCSAVQEKLKD 477 (536)
Q Consensus 466 eL~~~I~~~l~~ 477 (536)
+++++|.+.+..
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 30
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=9.4e-20 Score=167.73 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=111.9
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
..++|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++..+.+|||||+.+.... ....+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 77 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM--------RARGAQ 77 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS--------CCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH--------HHHHHh
Confidence 3568999999999999999999988776555555555655566666 7788999999997432111 112346
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-hHHHH-Hhcc---------CCCEEEEecc
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-QKVKL-EAQK---------REDVVCISAL 459 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-~~~~~-~~~~---------~~~~v~vSAk 459 (536)
.+|++++|+|++++......+.+..+ ...+.|+++|+||+|+.... +.... .... ..+++++||+
T Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~l~~~----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 78 VTDIVILVVAADDGVMPQTVEAINHA----KAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHH----GGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred hCCEEEEEEECCCCCcHHHHHHHHHH----HhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 78999999999887666555544333 23478999999999998642 22211 1110 1479999999
Q ss_pred CCCCHHHHHHHHHHHhccc
Q 009371 460 SGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 460 tg~GIdeL~~~I~~~l~~~ 478 (536)
+|.|+++++++|.+.+...
T Consensus 154 ~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999877654
No 31
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=1.8e-19 Score=167.79 Aligned_cols=161 Identities=24% Similarity=0.257 Sum_probs=110.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.++|+++|++|||||||+|+|++..+.....++.|.+.....+.+ ++..+.+|||||+....+....+.+.........
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 357999999999999999999997666555565566666666665 6789999999998654322111222222111235
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
+|++++|+|.++. +.. ..++..+...+.|+++|+||+|+.... ...........+++++||++|.|++++
T Consensus 86 ~~~~i~v~d~~~~---~~~---~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 86 PDLVVNIVDATAL---ERN---LYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp CSEEEEEEEGGGH---HHH---HHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred CCEEEEEecchhH---HHH---HHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHH
Confidence 8999999998752 111 223333333578999999999975321 111122223578999999999999999
Q ss_pred HHHHHHHhcccc
Q 009371 468 CSAVQEKLKDSM 479 (536)
Q Consensus 468 ~~~I~~~l~~~~ 479 (536)
+++|.+.+....
T Consensus 160 ~~~i~~~~~~~~ 171 (188)
T 2wjg_A 160 KKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHhcc
Confidence 999999887654
No 32
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.80 E-value=5.6e-19 Score=164.44 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=109.5
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
..+|+++|.+|||||||+|+|++.. . .....|...+...+.+ ++..+.+|||||+. .+.. ....+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~--~~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~---------~~~~~~~~~~~ 84 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-V--DTISPTLGFNIKTLEH-RGFKLNIWDVGGQK---------SLRSYWRNYFE 84 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-C--SSCCCCSSEEEEEEEE-TTEEEEEEEECCSH---------HHHTTGGGGCT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-C--CcccccCccceEEEEE-CCEEEEEEECCCCH---------hHHHHHHHHhc
Confidence 3579999999999999999999876 2 1122344444455555 67899999999982 2222 223457
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHh------ccCCCEEEEeccCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEA------QKREDVVCISALSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~------~~~~~~v~vSAktg 461 (536)
.+|++++|+|++++.+..... .+..++......+.|+++|+||+|+..... ...... ....+++++||++|
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 85 STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTG 164 (186)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCC
Confidence 899999999999886544432 334444443345789999999999976532 111111 12347999999999
Q ss_pred CCHHHHHHHHHHHhccc
Q 009371 462 NGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~~ 478 (536)
.|+++++++|.+.+.+.
T Consensus 165 ~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 165 EDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988765
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=4.9e-19 Score=180.75 Aligned_cols=162 Identities=25% Similarity=0.350 Sum_probs=113.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc-ccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHH-HHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAF-RATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f-~~tl~ei~ 390 (536)
..|+|+|++|||||||+|+|++..+.. .+.+.+|.+.....+. .++.++.+|||||+.+... .+.+.| ..+...+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~-~~~~~l~l~DTpG~~~~~~-~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-EGRRQIVFVDTPGLHKPMD-ALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE-ETTEEEEEEECCCCCCCCS-HHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE-eCCcEEEEecCccccchhh-HHHHHHHHHHHHHHh
Confidence 369999999999999999999987653 3344444443333333 4678999999999865322 222333 33456678
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HHHHHh--ccCCCEEEEeccCCCCHHHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKLEA--QKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~~~--~~~~~~v~vSAktg~GIdeL 467 (536)
.+|++++|+|++++....+.. +.+.+.... .+.|+++|+||+|+..... ...... ....+++++||++|.|+++|
T Consensus 86 ~ad~il~VvD~~~~~~~~~~~-i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPEDEL-VARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAEL 163 (301)
T ss_dssp SCSEEEEEEETTSCCCHHHHH-HHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred cCCEEEEEEECCCCCChHHHH-HHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHH
Confidence 899999999999876655432 223333321 3689999999999986544 221111 23357899999999999999
Q ss_pred HHHHHHHhccc
Q 009371 468 CSAVQEKLKDS 478 (536)
Q Consensus 468 ~~~I~~~l~~~ 478 (536)
+++|.+.+...
T Consensus 164 ~~~l~~~l~~~ 174 (301)
T 1wf3_A 164 KADLLALMPEG 174 (301)
T ss_dssp HHHHHTTCCBC
T ss_pred HHHHHHhcccC
Confidence 99999887654
No 34
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.80 E-value=1.3e-19 Score=168.11 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=85.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||... +.. ....+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 78 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER---------FRTITTAYY 78 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC------------------CCTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh---------hhhhHHHHH
Confidence 57999999999999999999976554333333333344445555 55 5788999999722 211 22345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +. .........+++++||++|.|+
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV 158 (183)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCH
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 789999999999987655544444333443334578999999999997532 11 1222234578999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
++++++|.+.+..
T Consensus 159 ~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 159 ENAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
No 35
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=168.78 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=104.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++..+........+.+.....+.+ ++ ..+.+|||||..... ......+
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~~~~~ 98 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFR--------SIAKSYF 98 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCH--------HHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchh--------hhHHHHH
Confidence 357999999999999999999987653222222233344445555 44 368899999973211 1123446
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC----------hh-HHHHHhccCCCEEEEec
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD----------PQ-KVKLEAQKREDVVCISA 458 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~----------~~-~~~~~~~~~~~~v~vSA 458 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+... .. ..........+++++||
T Consensus 99 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA 178 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSA 178 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCT
T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeC
Confidence 78999999999998776555555544555544457899999999998521 11 11112234568999999
Q ss_pred cCCCCHHHHHHHHHHHhcc
Q 009371 459 LSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~l~~ 477 (536)
++|.|+++++.+|.+.+..
T Consensus 179 ~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987754
No 36
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=7e-20 Score=184.21 Aligned_cols=159 Identities=23% Similarity=0.273 Sum_probs=116.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccch----hhHHHHHHHhHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP----TTLVAAFRATLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp----~~l~e~f~~tl~e 388 (536)
++|+++|.+|||||||+|+|+|..+.+.+.++.|.+.....+.+ ++..+.+|||||+.+..+ ..+.+.+......
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 57999999999999999999999877777777777777777776 667899999999866432 2223334444444
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HHHHHhccCCCEEEEeccCCCCH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
...+|++++|+|+++.. ..... ...+.+. ++|+++|+||+|+..... ........+.+++++||++|.|+
T Consensus 83 ~~~~d~ii~VvD~~~~~--~~~~~-~~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE--RNLYL-TLQLLEL---GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGI 156 (274)
T ss_dssp HTCCSEEEEEEEGGGHH--HHHHH-HHHHHHH---TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHH
T ss_pred hcCCCEEEEEecCCChH--HHHHH-HHHHHhc---CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 57899999999998742 22222 2233333 689999999999864211 11222234579999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++|+++|.+.+...
T Consensus 157 ~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 157 EALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887654
No 37
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.80 E-value=1.5e-19 Score=164.75 Aligned_cols=154 Identities=19% Similarity=0.161 Sum_probs=102.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++. .+.+|||||..+ +.. ....+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 76 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQER---------FHALGPIYY 76 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC----------------CCSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHh---------hhhhHHHHh
Confidence 47999999999999999999977654322222222223344444 333 678999999722 111 11235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +..........+++++||++|.|+
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGI 156 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 689999999999987655544443333333323468999999999986531 111222234578999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++++|.+.+.
T Consensus 157 ~~l~~~l~~~~~ 168 (170)
T 1z08_A 157 EELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 38
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.80 E-value=2.7e-19 Score=169.73 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=111.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+|+|++|||||||+|+|++..+.....+..+.+.....+.+ ++. .+.+|||||...... .....+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 79 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT--------ITSSYYR 79 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC--------CCGGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH--------HHHHhcc
Confidence 57999999999999999999987665433343344444455555 443 788999999732111 1223457
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +. .........+++++||++|.|++
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 89999999999998765555554444444444578999999999997632 11 11222345789999999999999
Q ss_pred HHHHHHHHHhccc
Q 009371 466 EFCSAVQEKLKDS 478 (536)
Q Consensus 466 eL~~~I~~~l~~~ 478 (536)
+++++|.+.+...
T Consensus 160 ~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 160 DAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 39
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.6e-19 Score=168.15 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=110.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHH-HhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFR-ATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~-~tl~ei 389 (536)
..+|+|+|.+|||||||+|+|++..+........+.+.....+... .+..+.+|||||.. .+. .....+
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 93 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE---------RYRTITTAYY 93 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH---------HCHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH---------HHHHHHHHHH
Confidence 3589999999999999999999865433222222233333444432 34578999999962 222 233456
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+.... . ..........+++++||++|.|+
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV 173 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 789999999999987665555555555555555689999999999986431 1 11122234568999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++++++|.+.+...
T Consensus 174 ~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 174 RQAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877543
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.80 E-value=4.6e-19 Score=167.54 Aligned_cols=156 Identities=13% Similarity=0.112 Sum_probs=106.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+|+|.+|||||||+|+|++..+........+.+.....+.. ++ ..+.+|||||+... .......+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 79 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERY--------RTITTAYYR 79 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG--------HHHHHTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhh--------cchHHHhhc
Confidence 57999999999999999999987654322222222222233333 33 47889999998321 111233467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++........+...+......+.|+++|+||+|+..... . .........+++++||++|.|++
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 899999999999876655544444444444445789999999999976321 1 11122235689999999999999
Q ss_pred HHHHHHHHHhcc
Q 009371 466 EFCSAVQEKLKD 477 (536)
Q Consensus 466 eL~~~I~~~l~~ 477 (536)
+++++|.+.+..
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.80 E-value=5.8e-19 Score=162.24 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=103.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
++|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||.... . ......+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~------~--~~~~~~~~ 78 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF------R--SLRTPFYR 78 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG------H--HHHGGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhh------h--hhHHHHHh
Confidence 57999999999999999999977554322222222223344444 44 37889999997321 1 11123457
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhc----CCCCCCEEEEEEcCCCCCCh---hHHHH-Hh-ccCCCEEEEeccCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSEL----DVSSIPKLMIWNKVDKVCDP---QKVKL-EA-QKREDVVCISALSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l----~~~~~piIvVlNKiDl~~~~---~~~~~-~~-~~~~~~v~vSAktg 461 (536)
.+|++++|+|++++.+......+...+... ...+.|+++|+||+|+.... +.... .. ....+++++||++|
T Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDA 158 (177)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 799999999999876554443333322222 12578999999999997421 11111 12 34578999999999
Q ss_pred CCHHHHHHHHHHHhcc
Q 009371 462 NGLDEFCSAVQEKLKD 477 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~ 477 (536)
.|+++++++|.+.+..
T Consensus 159 ~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887754
No 42
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=159.99 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=98.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
.++|+++|++|||||||+|+|++..+.... .....+.....+.+ ++. .+.+|||||..... +.. ....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~-------~~~~~~~~ 74 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLD-------KSWSQESC 74 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEE-TTEEEEEEEECCC--------------CHHHHHT
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEE-CCEEEEEEEEecCCCCccc-------hhhhHHhh
Confidence 357999999999999999999987654221 11222222344444 443 67899999983210 111 1223
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~ 462 (536)
+..+|++++|+|++++.+......+...+... ...+.|+++|+||+|+..... . .........+++++||++|.
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 75 LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQH 154 (175)
T ss_dssp TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTB
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence 46789999999999876655544444334332 234789999999999975421 1 11122335689999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 155 gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 155 NVAELFEGVVRQLRL 169 (175)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
No 43
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.80 E-value=5.2e-19 Score=164.28 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=104.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCe-eEEEEEeC----------CeeEEEeecccccccchhhHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPT-TRRVQMKN----------GGEFLLTDTVGFIQKLPTTLVAA 381 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~t-tr~i~l~~----------g~~i~LiDTpG~i~~lp~~l~e~ 381 (536)
.+|+|+|.+|||||||+|+|++..+.....+..+.+.. ...+...+ ...+.+|||||+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------- 83 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF-------- 83 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH--------
Confidence 57999999999999999999976553222221112212 22333322 247889999998221
Q ss_pred HHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhh-cCCCCCCEEEEEEcCCCCCCh----hHH-HHHhccCCCEEE
Q 009371 382 FRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSE-LDVSSIPKLMIWNKVDKVCDP----QKV-KLEAQKREDVVC 455 (536)
Q Consensus 382 f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~-l~~~~~piIvVlNKiDl~~~~----~~~-~~~~~~~~~~v~ 455 (536)
.......+..+|++++|+|++++.+......+...+.. ....+.|+++|+||+|+.... +.. ........++++
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE 163 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence 11133446789999999999987665554433333332 222578999999999996521 111 122233568999
Q ss_pred EeccCCCCHHHHHHHHHHHhcc
Q 009371 456 ISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 456 vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+||++|.|+++++++|.+.+..
T Consensus 164 ~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 164 TSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987754
No 44
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.80 E-value=3.5e-19 Score=167.24 Aligned_cols=156 Identities=17% Similarity=0.107 Sum_probs=107.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||...... .....+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 92 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRS--------ITRSYYR 92 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSC--------CCHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhh--------hHHHHhc
Confidence 47999999999999999999987654433333334444455555 44 3788999999732111 1234467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... + ..........+++++||++|.|++
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 89999999999987655554444444444344578999999999996421 1 112222345689999999999999
Q ss_pred HHHHHHHHHhcc
Q 009371 466 EFCSAVQEKLKD 477 (536)
Q Consensus 466 eL~~~I~~~l~~ 477 (536)
+++++|.+.+..
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 45
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=9.3e-19 Score=163.56 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=107.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
..+|+++|.+|||||||+|+|++..+. ....|...+...+.+ ++..+.+|||||+.+.. ......+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~--------~~~~~~~~~ 83 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLR--------SSWNTYYTN 83 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE---EEECCSCSSCEEEEE-TTEEEEEEECCC----C--------GGGHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCCccceEEEEE-CCEEEEEEECCCCHhHH--------HHHHHHhcC
Confidence 357999999999999999999976553 123345555566666 67899999999983211 112344678
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHh------ccCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEA------QKREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~------~~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++.+..... .+..++......+.|+++|+||+|+.... +...... ....+++++||++|.
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 99999999999886544333 33334433223578999999999997642 2221111 123478999999999
Q ss_pred CHHHHHHHHHHHhcccc
Q 009371 463 GLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~~ 479 (536)
|+++++++|.+.+....
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 164 GLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp THHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887653
No 46
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=167.98 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=103.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+|+|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||.. .+.. ....+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 95 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQE---------RFRSVTRSYY 95 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHH---------HHSCCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcH---------hHHHHHHHHh
Confidence 57999999999999999999987664433333334444455555 44 478899999962 1222 33456
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +..........+++++||++|.|+
T Consensus 96 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 96 RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV 175 (200)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 789999999999987655544444333333344578999999999986421 111222234578999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
++++++|.+.+..
T Consensus 176 ~~l~~~l~~~i~~ 188 (200)
T 2o52_A 176 EEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 47
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.79 E-value=2.2e-19 Score=179.17 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=113.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
++|+++|.+|||||||+|+|+|..+...+.++.|.+.....+.. ++..+.+|||||+.+..+....+.+...+.....+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 84 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDA 84 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCC
Confidence 57999999999999999999998877777777777666666655 67899999999996654433222222222222579
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHHhccCCCEEEEeccCCCCHHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLEAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
|++++|+|+++... ....+..+ . ..++|+++|+||+|+.... +........+.+++++||++|.|+++|+
T Consensus 85 d~ii~V~D~t~~~~--~~~~~~~l-~---~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 85 DLVILVADSVNPEQ--SLYLLLEI-L---EMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp SEEEEEEETTSCHH--HHHHHHHH-H---TTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHH
T ss_pred CEEEEEeCCCchhh--HHHHHHHH-H---hcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHH
Confidence 99999999998632 22222222 2 2378999999999985321 1122223345799999999999999999
Q ss_pred HHHHHHhcc
Q 009371 469 SAVQEKLKD 477 (536)
Q Consensus 469 ~~I~~~l~~ 477 (536)
++|.+.+..
T Consensus 159 ~~i~~~~~~ 167 (258)
T 3a1s_A 159 EKIVEYAQK 167 (258)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhhc
Confidence 999988753
No 48
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=1.3e-18 Score=163.09 Aligned_cols=153 Identities=19% Similarity=0.200 Sum_probs=106.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
.+|+|+|.+|||||||+|+|++..+... ...|.......+.. ++..+.+|||||.. .+.. ....+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~---------~~~~~~~~~~~~ 90 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNED--MIPTVGFNMRKITK-GNVTIKLWDIGGQP---------RFRSMWERYCRG 90 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEE-TTEEEEEEEECCSH---------HHHTTHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCc--cCCCCceeEEEEEe-CCEEEEEEECCCCH---------hHHHHHHHHHcc
Confidence 5799999999999999999997655321 22333333444443 67889999999972 2222 2344678
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHh------ccCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEA------QKREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~------~~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++....... .+..++......+.|+++|+||+|+..... ...... ....+++++||++|.
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 99999999999876544432 333444433346789999999999976422 121111 123468999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 171 gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 171 NIDITLQWLIQHSKS 185 (188)
T ss_dssp THHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.79 E-value=4.9e-19 Score=162.93 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=103.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC--CeeEEEeecccccccchhhHHHHHHH-hHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN--GGEFLLTDTVGFIQKLPTTLVAAFRA-TLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~--g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~e 388 (536)
..+|+++|++|||||||+|+|++..+.....+..+.+.....+.+.+ ...+.+|||||... +.. ....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~ 78 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER---------FQSLGVAF 78 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------CC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH---------hhhhhHHH
Confidence 35799999999999999999998765544344444555556565532 24788999999621 221 2234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHH-hhc---CCCCCCEEEEEEcCCCCCCh-----hHHHHHh--ccCCCEEEEe
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVL-SEL---DVSSIPKLMIWNKVDKVCDP-----QKVKLEA--QKREDVVCIS 457 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL-~~l---~~~~~piIvVlNKiDl~~~~-----~~~~~~~--~~~~~~v~vS 457 (536)
+..+|++++|+|++++.+......+...+ ... ...+.|+++|+||+|+.... ....... ....+++++|
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S 158 (182)
T 1ky3_A 79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTS 158 (182)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEB
T ss_pred hhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEe
Confidence 57899999999999876554444332222 222 12578999999999995421 1111222 3457899999
Q ss_pred ccCCCCHHHHHHHHHHHhcc
Q 009371 458 ALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 458 Aktg~GIdeL~~~I~~~l~~ 477 (536)
|++|.|+++++++|.+.+..
T Consensus 159 a~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 159 AKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.79 E-value=7.9e-19 Score=167.91 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=105.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-----------CeeEEEeecccccccchhhHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-----------GGEFLLTDTVGFIQKLPTTLVAA 381 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-----------g~~i~LiDTpG~i~~lp~~l~e~ 381 (536)
.+|+|+|.+|||||||+|+|++..+........+.+.....+.+.+ ...+.+|||||. +.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~---------~~ 96 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ---------ER 96 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH---------HH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc---------Hh
Confidence 5799999999999999999998765322222222233333444432 357889999996 22
Q ss_pred HH-HhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCC----CCCCEEEEEEcCCCCCCh----hH-HHHHhccCC
Q 009371 382 FR-ATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDV----SSIPKLMIWNKVDKVCDP----QK-VKLEAQKRE 451 (536)
Q Consensus 382 f~-~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~----~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~ 451 (536)
+. .....+..+|++++|+|++++.+.... ..++..+.. .+.|+++|+||+|+.... .. .........
T Consensus 97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~---~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 173 (217)
T 2f7s_A 97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNV---RNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 173 (217)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTCHHHHHHH---HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred HHhHHHHHhcCCCEEEEEEECcCHHHHHHH---HHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCC
Confidence 22 234556889999999999987554433 345554432 578999999999986531 11 112223457
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+++++||++|.|+++++++|.+.+..
T Consensus 174 ~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 174 PYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887754
No 51
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.79 E-value=1e-18 Score=158.62 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=104.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~a 392 (536)
+|+++|.+|||||||+|+|++..+. .. ..|.......+.. ++..+.+|||||+.+ +.. ....+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CC--CCCSSCCEEEEEC-SSCEEEEEECCCCGG---------GHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cc--cCcCceeEEEEEE-CCEEEEEEEcCCChh---------hHHHHHHHhccC
Confidence 5999999999999999999876543 11 2344444455554 667899999999832 111 22346789
Q ss_pred cceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHhc------cCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEAQ------KREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~~------~~~~~v~vSAktg~G 463 (536)
|++++|+|++++.+..... .+..++......+.|+++|+||+|+..... ....... ...+++++||++|.|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999999886544332 233344333345789999999999976521 1111111 224689999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009371 464 LDEFCSAVQEKLKD 477 (536)
Q Consensus 464 IdeL~~~I~~~l~~ 477 (536)
+++++++|.+.+..
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987753
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.79 E-value=4.8e-19 Score=160.29 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=102.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++..+.. ....++.......+.+ ++. .+.+|||||..+. .......+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~--------~~~~~~~~ 73 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE-DYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIRDNYF 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C--------HHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC-CCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchh--------HHHHHHHh
Confidence 3579999999999999999999765432 2222222222233333 443 6889999997321 11122346
Q ss_pred HhccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+......+ ..+.......+.|+++|+||+|+.... +..........+++++||++|.|
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T 1u8z_A 74 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153 (168)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 789999999999987654444333 333333344578999999999986531 11122223456899999999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
+++++++|.+.+.
T Consensus 154 i~~l~~~l~~~i~ 166 (168)
T 1u8z_A 154 VDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.79 E-value=2.2e-19 Score=165.22 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=107.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+.++ ..+.+|||||...... . ....+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--~------~~~~~~ 78 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK--M------LDKYIY 78 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT--T------HHHHHT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc--h------hhHHHh
Confidence 57999999999999999999987654222233334455566666432 5789999999743211 1 123367
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCC-EEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIP-KLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~p-iIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~ 462 (536)
.+|++++|+|++++.+......+...+.... ....| +++|+||+|+.... + ..........+++++||++|.
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 79 GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGD 158 (178)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 8999999999998766544443333333321 12456 78999999986521 1 112222345689999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 009371 463 GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~ 478 (536)
|+++++++|.+.+...
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 54
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.79 E-value=1.9e-19 Score=163.63 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=104.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||...... .....+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 76 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDA--------ITKAYYR 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTC--------CCHHHHT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHH--------HHHHHhc
Confidence 47999999999999999999987654332333333444455554 33 3788999999732111 1233457
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+.... .+.|+++|+||+|+.... +. .........+++++||++|.|++
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 8999999999998765444433332222221 478999999999986521 11 12222345689999999999999
Q ss_pred HHHHHHHHHhc
Q 009371 466 EFCSAVQEKLK 476 (536)
Q Consensus 466 eL~~~I~~~l~ 476 (536)
+++++|.+.+.
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T 1z2a_A 156 EVFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 55
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=168.08 Aligned_cols=156 Identities=18% Similarity=0.119 Sum_probs=104.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||..+. .......+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~ 100 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF--------RTITQSYYR 100 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGG--------HHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH--------HHHHHHHHh
Confidence 57999999999999999999977653222222223333445555 44 47889999997321 111234567
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHH-HHHhccCC-CEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKV-KLEAQKRE-DVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~-~~~~~~~~-~~v~vSAktg~GI 464 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +.. ........ +++++||++|.|+
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 89999999999987655444444333443334578999999999997521 111 22223345 8999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
++++++|.+.+..
T Consensus 181 ~~l~~~l~~~i~~ 193 (201)
T 2hup_A 181 EEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=167.08 Aligned_cols=157 Identities=19% Similarity=0.151 Sum_probs=106.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+|+|.+|||||||+|+|++..+........+.+..+..+.+. .+..+.+|||||+.+... .....+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 97 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA--------ITSAYYRG 97 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------THHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHHHhcc
Confidence 579999999999999999999876543322222222333444441 234678999999843211 12234678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++.+......+...+......+.|+++|+||+|+.... . ..........+++++||++|.|+++
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999987654444433333333334578999999999986531 1 1112223456899999999999999
Q ss_pred HHHHHHHHhcc
Q 009371 467 FCSAVQEKLKD 477 (536)
Q Consensus 467 L~~~I~~~l~~ 477 (536)
++++|.+.+..
T Consensus 178 l~~~l~~~i~~ 188 (193)
T 2oil_A 178 AFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 57
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=5.1e-19 Score=166.50 Aligned_cols=158 Identities=20% Similarity=0.099 Sum_probs=106.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|.+|||||||+|+|++..+.....+....+.....+.+. .+..+.+|||||..... ......+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~ 95 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH--------SLAPMYYRG 95 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG--------GGTHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH--------hhhHHhhcc
Confidence 479999999999999999999875432211111111122233332 23478899999973211 112334678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++.+......+...+......+.|+++|+||+|+.... + ..........+++++||++|.|+++
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 9999999999998766655555555555555578999999999986421 1 1222233457899999999999999
Q ss_pred HHHHHHHHhccc
Q 009371 467 FCSAVQEKLKDS 478 (536)
Q Consensus 467 L~~~I~~~l~~~ 478 (536)
++++|.+.+...
T Consensus 176 l~~~l~~~i~~~ 187 (192)
T 2fg5_A 176 LFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhh
Confidence 999999877643
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.79 E-value=8.3e-19 Score=163.64 Aligned_cols=155 Identities=20% Similarity=0.134 Sum_probs=102.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--------------------------------
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG-------------------------------- 359 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g-------------------------------- 359 (536)
..+|+++|++|||||||+|+|++..+.....+..+.+.....+.+ ++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC-------------------------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCcccccccccccccccccccccccccccccccc
Confidence 357999999999999999999987654222221112222222332 22
Q ss_pred -------eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 009371 360 -------GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWN 432 (536)
Q Consensus 360 -------~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlN 432 (536)
..+.+|||||...... .+...+..+|++++|+|++++.+......+...+... .+.|+++|+|
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~piilv~N 155 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS--------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILVAN 155 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT--------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCCEEEEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHH--------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh--CCCcEEEEEE
Confidence 5788999999733211 1234467899999999999886655544333333322 2489999999
Q ss_pred cCCCCCCh---h-HHHHHhccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 433 KVDKVCDP---Q-KVKLEAQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 433 KiDl~~~~---~-~~~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
|+|+.... + ..........+++++||++|.|+++++++|.+.+..
T Consensus 156 K~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 156 KIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99942211 1 122222345689999999999999999999887654
No 59
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.79 E-value=5.7e-19 Score=161.11 Aligned_cols=154 Identities=22% Similarity=0.197 Sum_probs=106.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
..+|+++|.+|||||||+|+|++..+.. ...|.......+.+ ++..+.+|||||...... .....+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ 74 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIGFNVETVTY-KNLKFQVWDLGGLTSIRP--------YWRCYYSN 74 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEEEE-TTEEEEEEEECCCGGGGG--------GGGGGCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCccceEEEEE-CCEEEEEEECCCChhhhH--------HHHHHhcc
Confidence 3579999999999999999998765421 22344444455555 678999999999832111 11233568
Q ss_pred ccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHh------ccCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEA------QKREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~------~~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++.+.... ..+..++......+.|+++|+||+|+..... ...... ....+++++||++|.
T Consensus 75 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (171)
T 1upt_A 75 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT 154 (171)
T ss_dssp CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCc
Confidence 9999999999987654333 2333444433335789999999999987521 121111 123479999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 155 gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 155 GLDEAMEWLVETLKS 169 (171)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
No 60
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.79 E-value=1.2e-18 Score=162.81 Aligned_cols=154 Identities=21% Similarity=0.252 Sum_probs=106.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.++|+++|++|||||||+++|++..+. ....|...+...+.+ ++..+.+|||||.... .......+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~---~~~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 83 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQS-QGFKLNVWDIGGQRKI--------RPYWRSYFEN 83 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE---EEEEETTEEEEEEEE-TTEEEEEEECSSCGGG--------HHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC---cccCcCCeEEEEEEE-CCEEEEEEECCCCHHH--------HHHHHHHhCC
Confidence 468999999999999999999987432 112233333445555 6788999999997321 0112345678
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHh------ccCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEA------QKREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~------~~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++.+..... .+..++......+.|+++|+||+|+..... ...... ....+++++||++|.
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 99999999999876544433 334444444446789999999999976432 121111 123468999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 164 gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNA 178 (181)
T ss_dssp THHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887654
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.79 E-value=5.6e-19 Score=160.68 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=93.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCee-EEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTT-RRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~tt-r~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ 387 (536)
..+|+++|.+|||||||+|+|++....... .+...+. ..+.+ ++. .+.+|||||... +.. ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~---------~~~~~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA---EAAGHTYDRSIVV-DGEEASLMVYDIWEQDG---------GRWLPGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------CEEEEEEEE-TTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC---CccccceEEEEEE-CCEEEEEEEEECCCCcc---------chhhhhh
Confidence 357999999999999999999986543211 1111111 22333 443 577999999732 211 223
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHH-hhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCC
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVL-SELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSG 461 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL-~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg 461 (536)
.+..+|++++|+|++++.+......+...+ ......+.|+++|+||+|+.+... ..........+++++||++|
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALH 148 (166)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGT
T ss_pred hhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCC
Confidence 457899999999999876655444433333 333345789999999999975421 11222234578999999999
Q ss_pred CCHHHHHHHHHHHhcc
Q 009371 462 NGLDEFCSAVQEKLKD 477 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~ 477 (536)
.|+++++++|.+.+..
T Consensus 149 ~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 149 HNVQALFEGVVRQIRL 164 (166)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987753
No 62
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.7e-19 Score=161.99 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=104.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+... ...|...++......++ ..+.+|||||+.+.. ......+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~ 73 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES--YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------AMQRLSIS 73 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS--CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCccccEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHhcc
Confidence 4799999999999999999998654321 22233333333322243 367899999974321 11223456
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
.+|++++|+|++++........+...+.... ..+.|+++|+||+|+..... ..........+++++||++|.|
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 74 KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153 (172)
T ss_dssp HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcC
Confidence 7999999999998765544443333333321 24789999999999864321 1112223356899999999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
+++++++|.+.+...
T Consensus 154 i~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 154 VKELFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987654
No 63
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.79 E-value=7e-19 Score=167.14 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=102.5
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
..+|+++|++|||||||+|+|++..+.. ...|...+...+.+ ++..+.+|||||+.. ++. ....+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~---------~~~~~~~~~~ 91 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELTI-AGMTFTTFDLGGHIQ---------ARRVWKNYLP 91 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEE-TTEEEEEEEECC-------------CCGGGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCCCceeEEEEE-CCEEEEEEECCCcHh---------hHHHHHHHHh
Confidence 3579999999999999999999876431 22355555666666 678999999999732 111 123457
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc------------------c
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ------------------K 449 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~------------------~ 449 (536)
.+|++++|+|++++.+..... .+..++......+.|+++|+||+|+.... +....... .
T Consensus 92 ~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1f6b_A 92 AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNAR 171 (198)
T ss_dssp GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCc
Confidence 899999999999876544433 23333333234578999999999997532 22222111 2
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHh
Q 009371 450 REDVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 450 ~~~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
..+++++||++|.|+++++++|.+.+
T Consensus 172 ~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 172 PLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999997654
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.79 E-value=2e-18 Score=160.08 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=104.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCee--EEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGE--FLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~--i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+. .....++.+.....+.+ ++.. +.+|||||...... .....+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 74 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSA--------MRDQYMR 74 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-CCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CT--------THHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHH--------HHHHHHh
Confidence 47999999999999999999976543 22222222222233333 5544 66899999732111 1123456
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhh-cCCCCCCEEEEEEcCCCCCChh---H-HHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSE-LDVSSIPKLMIWNKVDKVCDPQ---K-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~-l~~~~~piIvVlNKiDl~~~~~---~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+.. ....+.|+++|+||+|+..... . .........+++++||++|.|++
T Consensus 75 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 154 (189)
T 4dsu_A 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVD 154 (189)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 79999999999987665554444333333 3446789999999999975321 1 12222345789999999999999
Q ss_pred HHHHHHHHHhccc
Q 009371 466 EFCSAVQEKLKDS 478 (536)
Q Consensus 466 eL~~~I~~~l~~~ 478 (536)
+++++|.+.+...
T Consensus 155 ~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 155 DAFYTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887643
No 65
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.79 E-value=1.3e-18 Score=160.49 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=103.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccC-CeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLD-PTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld-~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
.+|+++|.+|||||||+|+|++..+.. .. .|.. .....+.+ ++. .+.+|||||... ...+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~ 70 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-LE--KTESEQYKKEMLV-DGQTHLVLIREEAGAPD-------------AKFS 70 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC-CS--SCSSSEEEEEEEE-TTEEEEEEEEECSSSCC-------------HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-cC--CCcceeEEEEEEE-CCEEEEEEEEECCCCch-------------hHHH
Confidence 579999999999999999999876542 11 2222 22333444 443 577999999843 1235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcC---CCCCCEEEEEEcCCCCC--C----hhHHHHH-hc-cCCCEEEEec
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELD---VSSIPKLMIWNKVDKVC--D----PQKVKLE-AQ-KREDVVCISA 458 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~---~~~~piIvVlNKiDl~~--~----~~~~~~~-~~-~~~~~v~vSA 458 (536)
..+|++++|+|++++.+......+..++..+. ..+.|+++|+||+|+.. . .+..... .. ...+++++||
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 150 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXA 150 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBT
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEec
Confidence 67999999999999877666665544454442 25789999999999842 1 1111111 12 2468999999
Q ss_pred cCCCCHHHHHHHHHHHhcc
Q 009371 459 LSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 459 ktg~GIdeL~~~I~~~l~~ 477 (536)
++|.|+++++++|.+.+..
T Consensus 151 ~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 66
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=4.7e-19 Score=169.47 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=108.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++. .+.+|||||... +.. ....+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------~~~~~~~~~ 96 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER---------FRSITQSYY 96 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG---------GHHHHGGGS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH---------HHHHHHHHH
Confidence 57999999999999999999987654333333333334445555 443 688999999722 111 22345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+.... . ..........+++++||++|.|+
T Consensus 97 ~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 97 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNV 176 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 789999999999987665544444444444444578999999999986421 1 11122234578999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++++++|.+.+...
T Consensus 177 ~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 177 EKLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877543
No 67
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.79 E-value=4.8e-19 Score=172.42 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=106.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
++|+|+|.+|||||||+++++...+.....+....+.....+.. ++. .+.+|||+|..+ |.. ...++
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~---------~~~l~~~~~ 83 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLER---------FRSLIPSYI 83 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTT---------CGGGHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchh---------hhhHHHHHh
Confidence 57999999999999999999876654332333333444444544 343 567999999732 222 22346
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|.+++.+......+...+......+.|+++|+||+|+.... +........+.+++++||++|.||
T Consensus 84 ~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 84 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCH
Confidence 889999999999998777666655555544445678999999999986532 122223344678999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009371 465 DEFCSAVQEKLKD 477 (536)
Q Consensus 465 deL~~~I~~~l~~ 477 (536)
+++|+.|.+.+..
T Consensus 164 ~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 164 KQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 68
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.79 E-value=3.2e-18 Score=159.50 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=103.1
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccc-hhhHHHHHHH----h
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKL-PTTLVAAFRA----T 385 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~l-p~~l~e~f~~----t 385 (536)
..++|+++|.+|||||||+|+|++....... .+...+........+..+.+|||||+.... +....+.+.. .
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVS---KTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC---SSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcccccc---CCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 3568999999999999999999987632111 111111111112234578899999974321 1111222332 2
Q ss_pred HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH------HHHh-c-cCCCEEEEe
Q 009371 386 LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV------KLEA-Q-KREDVVCIS 457 (536)
Q Consensus 386 l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~------~~~~-~-~~~~~v~vS 457 (536)
+.....+|++++|+|++.......... ..++... +.|+++|+||+|+....... .... . ...+++++|
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~-~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMM-VEWMKSL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHHHT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHH-HHHHHHc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 333344599999999988765554433 3344443 68999999999998643211 1111 1 336899999
Q ss_pred ccCCCCHHHHHHHHHHHhcc
Q 009371 458 ALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 458 Aktg~GIdeL~~~I~~~l~~ 477 (536)
|++|.|+++++++|.+.+..
T Consensus 175 a~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 175 SVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999988754
No 69
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=164.17 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=107.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++........+..+.+.....+.+ ++. .+.+|||+|..... . .+. ...+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-~----~~~--~~~~ 94 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG-G----WLR--DHCL 94 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG-H----HHH--HHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccch-h----hhH--HHhh
Confidence 468999999999999999999875443333344444444555555 554 56789999983321 1 111 1235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhh-cCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSE-LDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~-l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+......+...+.. ....+.|+++|+||+|+..... ..........+++++||++|.|
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 174 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence 679999999999987654444333222222 2224789999999999975321 1112222346899999999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
+++++++|.+.+...
T Consensus 175 v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 175 TRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 70
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=5.1e-19 Score=165.95 Aligned_cols=157 Identities=21% Similarity=0.240 Sum_probs=106.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.++|+|+|.+|||||||+|+|++..+...+ ...|.......+. ..+..+.+|||||+..... .....+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 86 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKH-ITATVGYNVETFE-KGRVAFTVFDMGGAKKFRG--------LWETYYDN 86 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----C-CCCCSSEEEEEEE-ETTEEEEEEEECCSGGGGG--------GGGGGCTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccc-cccccceeEEEEE-eCCEEEEEEECCCCHhHHH--------HHHHHHhc
Confidence 458999999999999999999987664311 1234444444444 3678899999999832111 11123578
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCC-------CCCCEEEEEEcCCCCCChh--HH-HHH------hccCCCEE
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDV-------SSIPKLMIWNKVDKVCDPQ--KV-KLE------AQKREDVV 454 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~-------~~~piIvVlNKiDl~~~~~--~~-~~~------~~~~~~~v 454 (536)
+|++++|+|++++.+..... .+..++..... .+.|+++|+||+|+..... .+ ... .....+++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEE
Confidence 99999999999987654442 33333332111 2789999999999987621 11 111 12445799
Q ss_pred EEeccCCCCHHHHHHHHHHHhccc
Q 009371 455 CISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
++||++|.|+++++++|.+.+...
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 71
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.79 E-value=1.5e-18 Score=162.46 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=105.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHH-H-hHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFR-A-TLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~-~-tl~ 387 (536)
..+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||. +.+. . ...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~---------~~~~~~~~~~ 89 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQ---------ERFRKSMVQH 89 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCS---------HHHHTTTHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCc---------hhhhhhhhHH
Confidence 357999999999999999999977654333333333444455555 44 47889999997 2232 2 234
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCC
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSG 461 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg 461 (536)
.+..+|++++|+|++++.+......+ ..+.......+.|+++|+||+|+.... +. .........+++++||++|
T Consensus 90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 46789999999999987655444333 333343335678999999999996431 11 1222234568999999999
Q ss_pred ---CCHHHHHHHHHHHhc
Q 009371 462 ---NGLDEFCSAVQEKLK 476 (536)
Q Consensus 462 ---~GIdeL~~~I~~~l~ 476 (536)
.|+++++++|.+.+.
T Consensus 170 ~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGSCHHHHHHHHC----
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999977654
No 72
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=165.07 Aligned_cols=156 Identities=23% Similarity=0.289 Sum_probs=107.3
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
..+|+++|.+|||||||+|+|++....... ...|.......+.+ ++..+.+|||||...... .....+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 90 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRN--------LWEHYYKE 90 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTGG--------GGGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEE-CCEEEEEEECCCCHHHHH--------HHHHHHhc
Confidence 357999999999999999999987632222 23445544555555 678999999999732111 11234578
Q ss_pred ccceEEEEeCCCcchHHHH-HHHHHHHhhcCC--CCCCEEEEEEcCCCCCChh--HHHHHh------ccCCCEEEEeccC
Q 009371 392 SSLLVHVVDISHPLAEQQI-EAVDKVLSELDV--SSIPKLMIWNKVDKVCDPQ--KVKLEA------QKREDVVCISALS 460 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~--~~~piIvVlNKiDl~~~~~--~~~~~~------~~~~~~v~vSAkt 460 (536)
+|++++|+|++++.+.... ..+..++..... .+.|+++|+||+|+..... ...... ....+++++||++
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 9999999999987544433 233344443333 5789999999999976422 222211 1245789999999
Q ss_pred CCCHHHHHHHHHHHhcc
Q 009371 461 GNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 461 g~GIdeL~~~I~~~l~~ 477 (536)
|.|+++++++|.+.+..
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 73
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.78 E-value=2.9e-18 Score=160.56 Aligned_cols=158 Identities=21% Similarity=0.302 Sum_probs=100.6
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCcccc--ccccccccCCeeEEEEEeCCeeEEEeecccccccc-hhhHHHHHHHhH-
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLA--EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKL-PTTLVAAFRATL- 386 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~--~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~l-p~~l~e~f~~tl- 386 (536)
..++|+++|.+|||||||+|+|++..+.. ...+..|... ..... +..+.+|||||+.... +....+.+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL--NFYII--NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCE--EEEEE--TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeE--EEEEE--CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 45789999999999999999999875321 1111112111 11222 3478999999974321 222223333322
Q ss_pred HHHHhc---cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH------HH-Hh-ccCCCEEE
Q 009371 387 EEISES---SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV------KL-EA-QKREDVVC 455 (536)
Q Consensus 387 ~ei~~a---DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~------~~-~~-~~~~~~v~ 455 (536)
..+..+ |++++|+|++++....+... ..++.. .+.|+++|+||+|+....... .. .. ....++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQM-YEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 223344 99999999998876655443 233443 478999999999998754221 11 11 12468999
Q ss_pred EeccCCCCHHHHHHHHHHHhc
Q 009371 456 ISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 456 vSAktg~GIdeL~~~I~~~l~ 476 (536)
+||++|.|+++++++|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999988764
No 74
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.78 E-value=4e-19 Score=177.76 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=115.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.++|+++|++|||||||+|+|+|..+...+.++.|.+.....+.+ ++..+.+|||||+.+..+....+...........
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 457999999999999999999998776666676676666666665 7788999999998764443333333332222367
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
+|++++|+|+++.. .....+..++. . ...|+++|+||+|+.... .........+.+++++||++|.|++++
T Consensus 82 ~d~vi~v~D~~~~~--~~~~~~~~~~~-~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l 156 (271)
T 3k53_A 82 ADVIVDIVDSTCLM--RNLFLTLELFE-M--EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEEL 156 (271)
T ss_dssp CSEEEEEEEGGGHH--HHHHHHHHHHH-T--TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHH
T ss_pred CcEEEEEecCCcch--hhHHHHHHHHh-c--CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHH
Confidence 99999999998752 22222222222 2 238999999999975321 111222234578999999999999999
Q ss_pred HHHHHHHhcccc
Q 009371 468 CSAVQEKLKDSM 479 (536)
Q Consensus 468 ~~~I~~~l~~~~ 479 (536)
+++|.+.+....
T Consensus 157 ~~~i~~~~~~~~ 168 (271)
T 3k53_A 157 KRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhccc
Confidence 999999886543
No 75
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=8e-19 Score=163.83 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=106.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|++|||||||+|+|++..+.....+..+.+.....+.+.+ +..+.+|||||...... .....+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 87 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--------LTPSYYRG 87 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------SHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHHHhcc
Confidence 5799999999999999999998765433222222333334444422 24688999999732111 12234678
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCCh----hHHHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDP----QKVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~----~~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++........+...+... ...++|+++|+||+|+.... ...........+++++||++|.|+++
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 99999999999876554444333223222 23578999999999995432 11222233456899999999999999
Q ss_pred HHHHHHHHhccc
Q 009371 467 FCSAVQEKLKDS 478 (536)
Q Consensus 467 L~~~I~~~l~~~ 478 (536)
++++|.+.+...
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 76
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=3.1e-19 Score=167.13 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=106.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|.+|||||||+|+|++..+........+.+.....+...+ +..+.+|||||....... ....+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~ 94 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--------TTAYYRG 94 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--------GGGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--------HHHhccC
Confidence 5899999999999999999998765432222222222223333311 347889999997332111 1233578
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCCCHHH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~GIde 466 (536)
+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +. .........+++++||++|.|+++
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999987655554444444444444578999999999996531 11 122223356899999999999999
Q ss_pred HHHHHHHHhcc
Q 009371 467 FCSAVQEKLKD 477 (536)
Q Consensus 467 L~~~I~~~l~~ 477 (536)
++++|.+.+..
T Consensus 175 l~~~l~~~i~~ 185 (189)
T 2gf9_A 175 VFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 77
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.78 E-value=2.3e-19 Score=180.76 Aligned_cols=157 Identities=21% Similarity=0.259 Sum_probs=110.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
++|+++|.+|||||||+|+|+|....+.+.++.|.+.....+.. +..+.+|||||+.+..+....+.+....-....+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 57999999999999999999998777777787777776665533 6689999999986543332222222221111369
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHHhccCCCEEEEeccCCCCHHHHH
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLEAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
|++++|+|+++.. ........ +.+ .++|+++|+||+|+.... +........+.+++++||++|.|+++++
T Consensus 82 d~vi~V~D~t~~e--~~~~~~~~-l~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 82 DSILNVVDATNLE--RNLYLTTQ-LIE---TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155 (272)
T ss_dssp SEEEEEEEGGGHH--HHHHHHHH-HHH---TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHH
T ss_pred CEEEEEecCCchH--hHHHHHHH-HHh---cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHH
Confidence 9999999998742 22222222 222 478999999999975321 1112222345789999999999999999
Q ss_pred HHHHHHhcc
Q 009371 469 SAVQEKLKD 477 (536)
Q Consensus 469 ~~I~~~l~~ 477 (536)
++|.+.+..
T Consensus 156 ~~i~~~~~~ 164 (272)
T 3b1v_A 156 KKAAHTTTS 164 (272)
T ss_dssp HHHHHSCTT
T ss_pred HHHHHHHhh
Confidence 999987754
No 78
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.78 E-value=9.1e-19 Score=158.90 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=101.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|.+|||||||+|+|++..+.....+ ++.......+.+.+ +..+.+|||||...... . ....+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--~------~~~~~~~ 74 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--M------RDLYMKN 74 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCC-CSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--H------HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-CccceEEEEEEECCEEEEEEEEECCChHHHHH--H------HHHHhcc
Confidence 4699999999999999999997654321111 11111122222311 23678999999743211 1 1233567
Q ss_pred ccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCCh----hHHHHH-hc-cCCCEEEEeccCCCCH
Q 009371 392 SSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDP----QKVKLE-AQ-KREDVVCISALSGNGL 464 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~----~~~~~~-~~-~~~~~v~vSAktg~GI 464 (536)
+|++++|+|++++.+......+ ..++......+.|+++|+||+|+.... +..... .. ...+++++||++|.|+
T Consensus 75 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154 (167)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCH
Confidence 9999999999987654443333 233333344689999999999996532 111111 12 2578999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++++|.+.+.
T Consensus 155 ~~l~~~l~~~i~ 166 (167)
T 1c1y_A 155 NEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 79
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=162.19 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=106.0
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
..++|+|+|.+|||||||+|+|++..+. .....++.+.....+.+ ++. .+.+|||||..... ......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~~~~ 82 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA--------AIRDNY 82 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH--------HHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH--------HHHHHH
Confidence 3468999999999999999999976543 22222222222333444 443 68899999973321 112234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHH-HHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVD-KVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~-~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~ 462 (536)
+..+|++++|+|++++.+......+. .+.......+.|+++|+||+|+.... +..........+++++||++|.
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRA 162 (206)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 57899999999999876554444333 33333334578999999999996532 1111222345689999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
No 80
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.78 E-value=2.5e-18 Score=162.32 Aligned_cols=153 Identities=21% Similarity=0.190 Sum_probs=104.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
..+|+++|++|||||||+|+|++..+. . ...|.......+.. ++..+.+|||||..+ +.. ....+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~---------~~~~~~~~~~ 95 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNICFTVWDVGGQDK---------IRPLWRHYFQ 95 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-E--EEEETTEEEEEEEE-TTEEEEEEECC--------------CTTHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-c--cCCcCceeEEEEEE-CCEEEEEEECCCCHh---------HHHHHHHHhc
Confidence 357999999999999999999876543 1 12344444445554 678899999999832 211 223467
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc------cCCCEEEEeccCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ------KREDVVCISALSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~------~~~~~v~vSAktg 461 (536)
.+|++++|+|++++.+..... .+..++......+.|+++|+||+|+.... ........ ...+++++||++|
T Consensus 96 ~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g 175 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQG 175 (192)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCc
Confidence 899999999999886544332 33334443334578999999999997652 12221111 1246899999999
Q ss_pred CCHHHHHHHHHHHhcc
Q 009371 462 NGLDEFCSAVQEKLKD 477 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~ 477 (536)
.|+++++++|.+.+.+
T Consensus 176 ~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 176 TGLYDGLDWLSHELSK 191 (192)
T ss_dssp BTHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987753
No 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=7.6e-19 Score=163.53 Aligned_cols=151 Identities=21% Similarity=0.192 Sum_probs=105.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
..+|+++|.+|||||||+|+|++..+ .....|.......+.+ ++..+.+|||||+.+... .....+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 88 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLRS--------SWNTYYTN 88 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSCEEEEE-TTEEEEEEEESSSGGGTC--------GGGGGGTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceeeEEEEE-CCEEEEEEECCCCHhHHH--------HHHHHhcc
Confidence 35799999999999999999998765 2223344445556665 778999999999832111 11233578
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHh------ccCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEA------QKREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~------~~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++.+..... .+..++......+.|+++|+||+|+.... ....... ....+++++||++|.
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999999876544332 33444443334678999999999997642 2222211 123478999999999
Q ss_pred CHHHHHHHHHHH
Q 009371 463 GLDEFCSAVQEK 474 (536)
Q Consensus 463 GIdeL~~~I~~~ 474 (536)
|+++++++|.+.
T Consensus 169 gi~~l~~~l~~~ 180 (181)
T 2h17_A 169 GLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998754
No 82
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.78 E-value=1.3e-18 Score=157.20 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=102.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+|+|++..+.... ..++.+.....+.+ ++. .+.+|||||..... ......+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~--------~~~~~~~~ 73 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKY-DPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA--------SMRDLYIK 73 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH--------HHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccC-CCCcceeEEEEEEE-CCEEEEEEEEECCCchhhH--------HHHHHHhc
Confidence 47999999999999999999976543211 11111112233333 443 47899999973211 11123457
Q ss_pred hccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+|++++|+|++++.+......+ ..++......+.|+++|+||+|+..... ..........+++++||++|.|+
T Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 74 NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMV 153 (167)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCH
Confidence 89999999999987654444333 3344444446799999999999864321 11122223568999999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
++++++|.+.+.
T Consensus 154 ~~l~~~l~~~~~ 165 (167)
T 1kao_A 154 DELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.78 E-value=1e-18 Score=164.76 Aligned_cols=150 Identities=22% Similarity=0.279 Sum_probs=105.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.+|+++|++|||||||+|+|++..+. ....|...+...+.+ ++..+.+|||||+..... .....+..+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~ 91 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAI-GNIKFTTFDLGGHIQARR--------LWKDYFPEV 91 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEEEE-TTEEEEEEECCCSGGGTT--------SGGGGCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC---ccccCCCCCeEEEEE-CCEEEEEEECCCCHHHHH--------HHHHHHhcC
Confidence 47999999999999999999986543 123456666666666 678999999999843111 011234689
Q ss_pred cceEEEEeCCCcchHHHHHH-HHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc-------------cCCCEEEE
Q 009371 393 SLLVHVVDISHPLAEQQIEA-VDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ-------------KREDVVCI 456 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~-v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~-------------~~~~~v~v 456 (536)
|++++|+|++++.+...... +..++......+.|+++|+||+|+.... +....... ...+++++
T Consensus 92 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T 1m2o_B 92 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC 171 (190)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEe
Confidence 99999999999865444332 3334433334578999999999997632 22222111 23468999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 009371 457 SALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~ 474 (536)
||++|.|+++++++|.+.
T Consensus 172 Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 172 SVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp BTTTTBSHHHHHHHHHTT
T ss_pred ECCcCCCHHHHHHHHHhh
Confidence 999999999999998764
No 84
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=1.1e-18 Score=161.41 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=104.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
..+|+++|++|||||||+|+|++..+. ....|.......+.+ ++..+.+|||||+.+... .....+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 85 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSY-KNLKLNVWDLGGQTSIRP--------YWRCYYAD 85 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCEEEEEE-TTEEEEEEEEC----CCT--------TGGGTTTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcC---ccCCcCccceEEEEE-CCEEEEEEECCCCHhHHH--------HHHHHhcc
Confidence 457999999999999999999976552 122344445555665 678899999999843211 11233578
Q ss_pred ccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCCh--hHHHHHhc------cCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDP--QKVKLEAQ------KREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~--~~~~~~~~------~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++.+..... .+..++......+.|+++|+||+|+.... ........ ...+++++||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999999876544332 23334433334678999999999997642 22222111 12368999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 166 gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 166 GITEGLDWLIDVIKE 180 (183)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987753
No 85
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.78 E-value=5.6e-19 Score=169.08 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=106.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE--eCC--eeEEEeecccccccchhhHHHHHHHhHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM--KNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l--~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
.+|+|+|.+|||||||+|+|++..+.. ....|...+.....+ .++ ..+.+|||||...... .....
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~ 81 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEK--NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV--------LKDVY 81 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTC--EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC--------CCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch--------HHHHH
Confidence 579999999999999999999765432 112233323333332 122 4688999999743211 11233
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HH-HHHhccCCCEEEEeccCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KV-KLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~-~~~~~~~~~~v~vSAktg~G 463 (536)
+..+|++++|+|++++.+......+...+......+.|+++|+||+|+..... .. ........+++++||++|.|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 57799999999999987666555454444444444689999999999976422 11 12223456899999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 009371 464 LDEFCSAVQEKLKDSM 479 (536)
Q Consensus 464 IdeL~~~I~~~l~~~~ 479 (536)
+++++++|.+.+....
T Consensus 162 v~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 162 FGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999886543
No 86
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.7e-18 Score=161.05 Aligned_cols=158 Identities=19% Similarity=0.205 Sum_probs=106.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++..+... ...|...+.......++. .+.+|||||..... ......+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 77 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDT--YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP--------AMQRLSI 77 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCT--TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------HHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCc--ccCccccceeEEEEECCEEEEEEEEeCCChHHhH--------HHHHHhh
Confidence 45799999999999999999998654321 122333333332222433 67899999973311 1122345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChh----HHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQ----KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~----~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++........+...+..+. ..+.|+++|+||+|+..... ..........+++++||++|.|
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 78 SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYN 157 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 77999999999998765544444433344332 23689999999999975321 1112223356899999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 009371 464 LDEFCSAVQEKLKDSM 479 (536)
Q Consensus 464 IdeL~~~I~~~l~~~~ 479 (536)
+++++++|.+.+....
T Consensus 158 i~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 158 VKELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999887653
No 87
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.77 E-value=4.1e-19 Score=167.51 Aligned_cols=156 Identities=18% Similarity=0.184 Sum_probs=76.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCC--ccccccccccccCCeeEEEEEeC---CeeEEEeecccccccchhhHHHHHHH-hH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA--TVLAEDRLFATLDPTTRRVQMKN---GGEFLLTDTVGFIQKLPTTLVAAFRA-TL 386 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~--~~~~~~~~~~Tld~ttr~i~l~~---g~~i~LiDTpG~i~~lp~~l~e~f~~-tl 386 (536)
.+|+++|.+|||||||+|+|++. .+.....+....+.....+.+.+ ...+.+|||||+. .+.. ..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~ 91 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---------LYKEQIS 91 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH---------HHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH---------HHHHHHH
Confidence 47999999999999999999987 33211112122244455566533 3478999999982 2222 22
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCC---CCCCEEEEEEcCCCCC-Ch----hH-HHHHhccCCCEEEEe
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDV---SSIPKLMIWNKVDKVC-DP----QK-VKLEAQKREDVVCIS 457 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~---~~~piIvVlNKiDl~~-~~----~~-~~~~~~~~~~~v~vS 457 (536)
..+..+|++++|+|++++.+......+...+..... .+.|+++|+||+|+.. .. +. .........+++++|
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~S 171 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVS 171 (208)
T ss_dssp TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECC
T ss_pred HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEec
Confidence 345779999999999987665554444433433332 5789999999999976 21 11 122223457899999
Q ss_pred ccC-CCCHHHHHHHHHHHhcc
Q 009371 458 ALS-GNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 458 Akt-g~GIdeL~~~I~~~l~~ 477 (536)
|++ |.|+++++++|.+.+..
T Consensus 172 a~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 172 ANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp C-------CHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHH
Confidence 999 99999999999887754
No 88
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5.5e-19 Score=170.56 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=106.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+|+|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||...... .....+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 84 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA--------ITSAYYR 84 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC--------CCGGGTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhh--------hHHHHhc
Confidence 57999999999999999999987665444444444445555555 45 4788999999732111 1122357
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+......+.|+++|+||+|+.... +..........+++++||++|.|++
T Consensus 85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 85 GAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVD 164 (223)
T ss_dssp TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 89999999999988765555444444444434578999999999986421 1112222345689999999999999
Q ss_pred HHHHHHHHHhcccce
Q 009371 466 EFCSAVQEKLKDSMV 480 (536)
Q Consensus 466 eL~~~I~~~l~~~~~ 480 (536)
+++++|.+.+.....
T Consensus 165 ~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 165 KAFEELINTIYQKVS 179 (223)
T ss_dssp HHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876543
No 89
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.77 E-value=1.5e-18 Score=159.61 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=105.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
.++|+++|.+|||||||+|+|++..+.. +...++.......+.+ ++ ..+.+|||||...... . ....+
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~--~------~~~~~ 78 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGA--M------REQYM 78 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCS-SCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSC--C------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHH--H------HHHHH
Confidence 3589999999999999999999864432 2222221222233333 44 3678999999743211 1 11235
Q ss_pred HhccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++.+......+ ..++......+.|+++|+||+|+.... . ..........+++++||++|.|
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158 (181)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 679999999999987654444333 334454455688999999999986531 1 1122223456899999999999
Q ss_pred HHHHHHHHHHHhccc
Q 009371 464 LDEFCSAVQEKLKDS 478 (536)
Q Consensus 464 IdeL~~~I~~~l~~~ 478 (536)
+++++++|.+.+...
T Consensus 159 v~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 159 VDEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887643
No 90
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=3.6e-18 Score=158.28 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=103.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCee--EEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGE--FLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~--i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++..+.....+ ++.......+.. ++.. +.+|||||...... .....+
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~-t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 87 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDP-TIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSA--------MREQYM 87 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT-TCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCS--------SHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-CccceeEEEEEe-CCcEEEEEEEECCCchhhHH--------HHHHHH
Confidence 45899999999999999999997644322111 111112233333 5544 45699999732111 112335
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHH-HHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEecc-CCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDK-VLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISAL-SGN 462 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~-vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAk-tg~ 462 (536)
..+|++++|+|++++.+......+.. ++......+.|+++|+||+|+..... ..........+++++||+ +|.
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 88 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL 167 (183)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence 77999999999998765544443332 33334456889999999999875321 122222345789999999 999
Q ss_pred CHHHHHHHHHHHhc
Q 009371 463 GLDEFCSAVQEKLK 476 (536)
Q Consensus 463 GIdeL~~~I~~~l~ 476 (536)
|+++++++|.+.+.
T Consensus 168 ~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 168 NVDKTFHDLVRVIR 181 (183)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998765
No 91
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.77 E-value=8.6e-19 Score=165.70 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=106.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
..+|+|+|++|||||||+|+|++..+.....+..+.+.....+.+.+ ...+.+|||||...... .....+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 79 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS--------LGVAFYR 79 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC--------SCCGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------hHHHHHh
Confidence 35799999999999999999998765433333333333344444422 24788999999732111 0122356
Q ss_pred hccceEEEEeCCCcchHHHHHHHHH-HHhhcC---CCCCCEEEEEEcCCCCCCh---hHHHH-Hh-ccCCCEEEEeccCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDK-VLSELD---VSSIPKLMIWNKVDKVCDP---QKVKL-EA-QKREDVVCISALSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~-vL~~l~---~~~~piIvVlNKiDl~~~~---~~~~~-~~-~~~~~~v~vSAktg 461 (536)
.+|++++|+|++++.+......+.. +..... ..+.|+++|+||+|+.... ..... .. ....+++++||++|
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEA 159 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 8999999999998765544443332 222221 1468999999999997432 11111 11 34578999999999
Q ss_pred CCHHHHHHHHHHHhcc
Q 009371 462 NGLDEFCSAVQEKLKD 477 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~ 477 (536)
.|+++++++|.+.+..
T Consensus 160 ~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 160 INVEQAFQTIARNALK 175 (207)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 92
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=1.4e-18 Score=185.84 Aligned_cols=164 Identities=21% Similarity=0.257 Sum_probs=113.9
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchh-hHHHHH--HHhH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT-TLVAAF--RATL 386 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~-~l~e~f--~~tl 386 (536)
..++|+++|++|||||||+|+|++.... +.+.+++|.+.....+.+ ++..+.+|||||+.+.... ...+.| ..++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 3468999999999999999999998654 455666777766666666 7888999999998543221 011222 3355
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH----H-HH---H--hccCCCEEEE
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK----V-KL---E--AQKREDVVCI 456 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~----~-~~---~--~~~~~~~v~v 456 (536)
..+..+|++++|+|++++.+.++...+..+. ..++|+++|+||+|+.+.... . .. . .....+++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 6788999999999999988777665433332 247899999999999864321 1 11 1 1135689999
Q ss_pred eccCCCCHHHHHHHHHHHhcccc
Q 009371 457 SALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~l~~~~ 479 (536)
||++|.|++++++.+.+.+....
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHHHT
T ss_pred ecccCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998887543
No 93
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=5.5e-19 Score=188.91 Aligned_cols=160 Identities=27% Similarity=0.317 Sum_probs=101.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHH-HhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFR-ATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~-~tl~ei 389 (536)
.++|+|+|.+|||||||+|+|++.... +.+.++.|.+.....+.+ ++..+.+|||||+...... ....+. .+...+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~-~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEP-FLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-CSSCCEEEC---------C-HHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchh-HHHHHHHHHHHHH
Confidence 368999999999999999999987654 345555666655555544 6778999999998533222 223333 355677
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHH-HhccCCCEEEEeccCCCCHHHHH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKL-EAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~-~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
..||++++|+|++++.+..+.. +..++. ..++|+++|+||+|+......... ......+++++||++|.|+++|+
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~~-~~~~l~---~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADEE-VAKILY---RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHHH-HHHHHT---TCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred HhCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHH
Confidence 8999999999999887765533 333443 357899999999998754221111 11123478999999999999999
Q ss_pred HHHHHHhcc
Q 009371 469 SAVQEKLKD 477 (536)
Q Consensus 469 ~~I~~~l~~ 477 (536)
++|.+.+..
T Consensus 157 ~~i~~~l~~ 165 (436)
T 2hjg_A 157 DAVAEHFKN 165 (436)
T ss_dssp HHHHHTGGG
T ss_pred HHHHHhcCc
Confidence 999998863
No 94
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=3.3e-18 Score=158.05 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=105.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++..+. .....++.+.....+.+ ++. .+.+|||||..... ......+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 87 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA--------AIRDNYF 87 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH--------HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCccceEEEEEEEE-CCEEEEEEEEECCCCcccH--------HHHHHHh
Confidence 357999999999999999999976543 22222222222233333 443 68899999973311 1122345
Q ss_pred HhccceEEEEeCCCcchHHHHHHH-HHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAV-DKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNG 463 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v-~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~G 463 (536)
..+|++++|+|++++........+ ..++......++|+++|+||+|+.... +..........+++++||++|.|
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 88 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167 (187)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 789999999999987654444333 333444444578999999999986531 11122233456899999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009371 464 LDEFCSAVQEKLKD 477 (536)
Q Consensus 464 IdeL~~~I~~~l~~ 477 (536)
+++++++|.+.+..
T Consensus 168 i~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 168 VDKVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 95
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.77 E-value=2.8e-18 Score=154.63 Aligned_cols=154 Identities=17% Similarity=0.196 Sum_probs=101.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+... ...++.+.....+.. ++. .+.+|||||..+... . ....+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~--~------~~~~~~ 73 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-CDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSA--M------RDQYMR 73 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCCH--H------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc-cCCccceEEEEEEEE-CCEEEEEEEEECCCchhhhH--H------HHHhhc
Confidence 4699999999999999999997654321 111111112233333 443 567999999743211 1 112356
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhh-cCCCCCCEEEEEEcCCCCCCh---hH-HHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSE-LDVSSIPKLMIWNKVDKVCDP---QK-VKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~-l~~~~~piIvVlNKiDl~~~~---~~-~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|++++.+......+...+.. ....+.|+++|+||+|+.... .. .........+++++||++|.|++
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 153 (166)
T 2ce2_X 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153 (166)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 79999999999987654444433333332 233478999999999987632 11 11222345689999999999999
Q ss_pred HHHHHHHHHhc
Q 009371 466 EFCSAVQEKLK 476 (536)
Q Consensus 466 eL~~~I~~~l~ 476 (536)
+++++|.+.+.
T Consensus 154 ~l~~~l~~~~~ 164 (166)
T 2ce2_X 154 DAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 96
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=4.2e-18 Score=183.03 Aligned_cols=164 Identities=23% Similarity=0.271 Sum_probs=116.5
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCc-cccccccccccCCeeEEEEEeCCeeEEEeecccccccchh---hHHHHHHHhH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGAT-VLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT---TLVAAFRATL 386 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~-~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~---~l~e~f~~tl 386 (536)
..++|+++|.+|+|||||+|+|++.. ....+.+++|.+.....+.+ ++..+.+|||||+.+.... ........++
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 35689999999999999999999875 34566677777777777776 7889999999997543211 1122233456
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HHH-HHh-----ccCCCEEEE
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KVK-LEA-----QKREDVVCI 456 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~-~~~-----~~~~~~v~v 456 (536)
..+..+|++++|+|++++....+...+..+ .. .++|+++|+||+|+..... ... ... ....+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~-~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYA-HE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHH-HH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhhCCEEEEEEeCCCCcCHHHHHHHHHH-HH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 678899999999999998776665444333 33 4689999999999986421 111 111 125789999
Q ss_pred eccCCCCHHHHHHHHHHHhcccc
Q 009371 457 SALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~l~~~~ 479 (536)
||++|.|+++++++|.+.+....
T Consensus 349 SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999999886554
No 97
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.76 E-value=5.8e-20 Score=173.93 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=106.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+|+|.+|||||||+|+|++..+.....+..+.+.....+.+ ++ ..+.+|||||...... .....+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 103 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT--------ITSSYY 103 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCC--------CSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHH--------HHHHHh
Confidence 358999999999999999999987665444444455555566665 44 3688999999732111 012235
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+......+.|+++|+||+|+.... ...........+++++||++|.|+
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 183 (199)
T ss_dssp CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 789999999999998766655555555555444578999999999987532 122223344578999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++++++|.+.+...
T Consensus 184 ~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 184 EQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998877653
No 98
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.76 E-value=9e-18 Score=157.65 Aligned_cols=150 Identities=18% Similarity=0.217 Sum_probs=102.5
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+|+|.+|||||||+|++++..+..... .|.+.....+.+ ++. .+.+|||+|... +. .+
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~----~~ 83 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEES--PEGGRFKKEIVV-DGQSYLLLIRDEGGPPE---------LQ----FA 83 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCC--TTCEEEEEEEEE-TTEEEEEEEEECSSSCC---------HH----HH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CCcceEEEEEEE-CCEEEEEEEEECCCChh---------hh----ee
Confidence 4589999999999999999998876542221 122222234444 554 566799999732 11 45
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCC------hhHH-HHHhcc-CCCEEEEeccC
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCD------PQKV-KLEAQK-REDVVCISALS 460 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~------~~~~-~~~~~~-~~~~v~vSAkt 460 (536)
..+|++++|+|++++.+.+....+...+... +..+.|+++|+||+|+... .+.. ...... ..+++++||++
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 6799999999999977655544443333332 2257899999999998421 1111 122222 36899999999
Q ss_pred CCCHHHHHHHHHHHhcc
Q 009371 461 GNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 461 g~GIdeL~~~I~~~l~~ 477 (536)
|.|+++++++|.+.+..
T Consensus 164 ~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887654
No 99
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.76 E-value=9.6e-18 Score=156.57 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=101.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||+|+|++..+.. ....++.+.....+.+ ++. .+.+|||||... +.. ....+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 90 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEE---------YSAMRDQYM 90 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC--------------------C
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCcc-ccCCccceEEEEEEEE-CCEEEEEEEEECCChHH---------HHHHHHHhh
Confidence 579999999999999999999765432 1111221112233333 443 578999999722 111 22345
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCCh---hH-HHHHhccCCCEEEEeccCCCCH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDP---QK-VKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~---~~-~~~~~~~~~~~v~vSAktg~GI 464 (536)
..+|++++|+|++++.+......+...+... ...+.|+++|+||+|+.... .. .........+++++||++|.|+
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 7899999999999876655554443333332 23478999999999987531 11 1222233568999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++++++|.+.+...
T Consensus 171 ~~l~~~l~~~~~~~ 184 (190)
T 3con_A 171 EDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877643
No 100
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=4.7e-18 Score=160.20 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=104.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCC-eeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP-TTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~-ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
..+|+++|.+|||||||+|+|++..+..... .|... ....+.+ ++ ..+.+|||||+.. .. .....
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~---~~------~~~~~ 95 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYD--PTLESTYRHQATI-DDEVVSMEILDTAGQED---TI------QREGH 95 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECCCCCC---CH------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccC--CCCCceEEEEEEE-CCEEEEEEEEECCCCCc---cc------chhhh
Confidence 3579999999999999999999875532211 12111 1222333 43 4688999999854 11 12234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhh-cCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSE-LDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~-l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~ 462 (536)
+..+|++++|+|++++.+......+...+.. ....+.|+++|+||+|+.... +..........+++++||++|.
T Consensus 96 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGE 175 (196)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCC
Confidence 5789999999999987665544444333333 234578999999999986531 1112222335789999999999
Q ss_pred -CHHHHHHHHHHHhcc
Q 009371 463 -GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 -GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 176 ~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 176 GNITEIFYELCREVRR 191 (196)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 999999999887754
No 101
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.75 E-value=1.8e-18 Score=160.08 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=103.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
++|+++|.+|||||||+|+|++..+. .....++.......+.. ++ ..+.+|||||...... .....+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 76 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI--------FPQTYSI 76 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC--------CCGGGTT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhH--------HHHHHHh
Confidence 57999999999999999999965432 22222221222233333 55 3568999999743211 0112346
Q ss_pred hccceEEEEeCCCcchHHHHHHHH-HHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVD-KVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~-~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+|++++|+|++++.+......+. .++......+.|+++|+||+|+..... ..........+++++||++|.|+
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 77 DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA 156 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCH
Confidence 799999999999876655544333 334444556789999999999865321 12223334578999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 009371 465 DEFCSAVQEKLKDSM 479 (536)
Q Consensus 465 deL~~~I~~~l~~~~ 479 (536)
++++++|.+.+....
T Consensus 157 ~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 157 VDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=7.7e-18 Score=157.34 Aligned_cols=155 Identities=22% Similarity=0.198 Sum_probs=108.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
..+|+++|++|||||||+|+|++..+.. ...|.......+.+ ++..+.+|||||+.+.... ....+..
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~--------~~~~~~~ 89 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVVT---TVPTVGVNLETLQY-KNISFEVWDLGGQTGVRPY--------WRCYFSD 89 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCEE---ECSSTTCCEEEEEE-TTEEEEEEEECCSSSSCCC--------CSSSSTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---cCCCCceEEEEEEE-CCEEEEEEECCCCHhHHHH--------HHHHhhc
Confidence 4579999999999999999998765431 12344455555665 6789999999997432111 1123468
Q ss_pred ccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHh------ccCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEA------QKREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~------~~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++.+.... ..+..++......+.|+++|+||+|+..... ...... ....+++++||++|.
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGD 169 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCcc
Confidence 9999999999987654333 2334444443445789999999999976521 121111 122368999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 009371 463 GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 463 GIdeL~~~I~~~l~~~ 478 (536)
|+++++++|.+.+...
T Consensus 170 gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 170 GLVEGMDWLVERLREQ 185 (189)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 103
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.75 E-value=3.7e-18 Score=157.83 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=102.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+++|++..+.. ....++.+.....+.+ ++. .+.+|||||+..... .....+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 75 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR--------LRPLSYP 75 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCS-SCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGTT--------TGGGGCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHHH--------HHHHhcc
Confidence 479999999999999999999765432 2222222222233333 444 456999999832110 1112356
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----------------HHHhccC-C
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----------------KLEAQKR-E 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----------------~~~~~~~-~ 451 (536)
.+|++++|+|++++.+..... .+...+.... .+.|+++|+||+|+....... ....... .
T Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (186)
T 1mh1_A 76 QTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 154 (186)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 799999999999876655543 3433444332 378999999999987642110 1111223 3
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
+++++||++|.|+++++++|.+.+...
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 155 KYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred EEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 899999999999999999999887654
No 104
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.75 E-value=1.5e-18 Score=166.98 Aligned_cols=158 Identities=18% Similarity=0.088 Sum_probs=104.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
..+|+++|.+|||||||+++|++..+.....+. ..+.....+.+. ....+.+|||+|...... .....+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~ 97 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPT-VFENYTACLETEEQRVELSLWDTSGSPYYDN--------VRPLCYS 97 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC-SEEEEEEEEEC--CEEEEEEEEECCSGGGTT--------TGGGGCT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCe-eeeeEEEEEEECCEEEEEEEEECCCCHhHHH--------HHHHHcC
Confidence 457999999999999999999987553221111 111112222332 224678999999732111 1112357
Q ss_pred hccceEEEEeCCCcchHHH-HHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-----------------hHHHHHhccCC-
Q 009371 391 ESSLLVHVVDISHPLAEQQ-IEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-----------------QKVKLEAQKRE- 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~-~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-----------------~~~~~~~~~~~- 451 (536)
.+|++++|+|++++.+... ...+...+.... .+.|+++|+||+|+.... +..........
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 8999999999999876555 444544454443 478999999999996531 11112223345
Q ss_pred CEEEEeccCCCC-HHHHHHHHHHHhcccc
Q 009371 452 DVVCISALSGNG-LDEFCSAVQEKLKDSM 479 (536)
Q Consensus 452 ~~v~vSAktg~G-IdeL~~~I~~~l~~~~ 479 (536)
+++++||++|.| +++++++|.+.+....
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 899999999998 9999999999876543
No 105
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.74 E-value=5.9e-18 Score=157.77 Aligned_cols=157 Identities=16% Similarity=0.097 Sum_probs=102.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccc----cccCCeeEEEEE-------eC--CeeEEEeecccccccchhhHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLF----ATLDPTTRRVQM-------KN--GGEFLLTDTVGFIQKLPTTLV 379 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~----~Tld~ttr~i~l-------~~--g~~i~LiDTpG~i~~lp~~l~ 379 (536)
.+|+++|.+|||||||++.+.+.......... ....++.. ..+ .+ ...+.+|||||......
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---- 89 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLF-FDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA---- 89 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEE-EEECCSSCCCSSSCEEEEEEEECCSCCSCSH----
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccee-eeecccccccccCCceEEEEEeCCChHHHHH----
Confidence 57999999999999999998875332110000 00111211 111 11 23688999999743211
Q ss_pred HHHHHhHHHHHhccceEEEEeCCCcchHHH---HHHHHHHHhhc--CCCCCCEEEEEEcCCCCCChh--HH-HHHhccCC
Q 009371 380 AAFRATLEEISESSLLVHVVDISHPLAEQQ---IEAVDKVLSEL--DVSSIPKLMIWNKVDKVCDPQ--KV-KLEAQKRE 451 (536)
Q Consensus 380 e~f~~tl~ei~~aDliLlVvD~s~~~~~~~---~~~v~~vL~~l--~~~~~piIvVlNKiDl~~~~~--~~-~~~~~~~~ 451 (536)
.....+..+|++++|+|++++..... ...+..++..+ ...+.|+++|+||+|+..... .. ........
T Consensus 90 ----~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 90 ----SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK 165 (198)
T ss_dssp ----HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCC
T ss_pred ----HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCC
Confidence 11234678999999999996644433 33444556554 335789999999999976522 12 22223445
Q ss_pred -CEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 452 -DVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 452 -~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
+++++||++|.|+++++++|.+.+...
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 899999999999999999999877543
No 106
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=160.55 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=99.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+.. ....++.+.....+.+ ++ ..+.+|||||..... .....+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~---------~~~~~~~ 90 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFIS-EYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPR---------NCERYLN 90 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CC---------CTHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCCc-ccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcch---------hHHHHHh
Confidence 479999999999999999999765431 1111111111122333 44 367799999973221 1123467
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcC---CCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEec-cCC
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELD---VSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISA-LSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~---~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSA-ktg 461 (536)
.+|++++|+|++++.+......+...+.... ..+.|+++|+||+|+.... +..........+++++|| ++|
T Consensus 91 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 91 WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDF 170 (187)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCS
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcc
Confidence 8999999999998765554443332222221 1478999999999986421 112222234568999999 899
Q ss_pred CCHHHHHHHHHHHhc
Q 009371 462 NGLDEFCSAVQEKLK 476 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~ 476 (536)
.|+++++++|.+.+.
T Consensus 171 ~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 171 EHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999988764
No 107
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=160.32 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=94.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||+|+|++..+.. ....++.+.....+.+ ++. .+.+|||||... +.. ....+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------~~~~~~~~~ 103 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFPE-SYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDD---------YDRLRPLFY 103 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEE-TTEEEEEEEEEC-----------------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEE-CCEEEEEEEEECCCchh---------hhHHHHHHh
Confidence 579999999999999999999865432 1111221222233333 443 678999999722 221 22345
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----------------HHHHhccCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----------------VKLEAQKRE 451 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----------------~~~~~~~~~ 451 (536)
..+|++++|+|++++.+..... .+...+.... .+.|+++|+||+|+...... .........
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 182 (214)
T 2j1l_A 104 PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA 182 (214)
T ss_dssp -CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC
Confidence 7899999999999876555443 3333343332 47899999999999765321 111112233
Q ss_pred -CEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 452 -DVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 452 -~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
+++++||++|.|+++++++|.+.+...
T Consensus 183 ~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 183 VAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999999877543
No 108
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.74 E-value=6.6e-18 Score=160.21 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=102.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+.....+..+ ......+.+ ++. .+.+|||||...... .....+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~ 95 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEV-DGKQVELALWDTAGQEDYDR--------LRPLSYP 95 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSC-CCCEEEEEE-TTEEEEEEEECCCCSGGGTT--------TGGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcccCCccc-ceEEEEEEE-CCEEEEEEEEECCCchhHHH--------HHHHhcC
Confidence 4799999999999999999998765432222222 222233444 443 678999999732110 0112356
Q ss_pred hccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----------------HHHhccCC-
Q 009371 391 ESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----------------KLEAQKRE- 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----------------~~~~~~~~- 451 (536)
.+|++++|+|++++.+.... ..+...+.... .+.|+++|+||+|+....... ........
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (201)
T 2gco_A 96 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF 174 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc
Confidence 89999999999987655544 34444444432 478999999999998653211 11111233
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
+++++||++|.|+++++++|.+.+.
T Consensus 175 ~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 175 GYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999988653
No 109
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=9.6e-18 Score=157.32 Aligned_cols=153 Identities=21% Similarity=0.198 Sum_probs=102.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+++|++..+. .....++.+.....+.+ ++ ..+.+|||||..+... .....+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 88 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR--------LRPLSYP 88 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT--------TGGGGCT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH--------HHHHhcC
Confidence 47999999999999999999976543 22222222333334444 44 4678999999843211 1112356
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----------------HHHHhccCC-
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----------------VKLEAQKRE- 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----------------~~~~~~~~~- 451 (536)
.+|++++|+|++++.+..... .+...+... ..+.|+++|+||+|+...... .........
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 799999999999876554443 333333332 237899999999999764211 111111233
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
+++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999987653
No 110
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.74 E-value=3.9e-18 Score=160.26 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=102.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+... ...++.......+.+ ++. .+.+|||||..... ......+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~ 93 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTA-YVPTVFENFSHVMKY-KNEEFILHLWDTAGQEEYD--------RLRPLSYA 93 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGT--------TTGGGGCT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCc-cCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHHHH--------HHhHhhcc
Confidence 5799999999999999999998764321 111111111222333 454 45899999973211 11122356
Q ss_pred hccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh------hH-HHHHhccCCC-EEEEeccCC
Q 009371 391 ESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP------QK-VKLEAQKRED-VVCISALSG 461 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~------~~-~~~~~~~~~~-~v~vSAktg 461 (536)
.+|++++|+|++++.+.... ..+...+... ..+.|+++|+||+|+.... +. .........+ ++++||++|
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 89999999999998665553 3444444433 3478999999999987531 11 1122223445 999999999
Q ss_pred CCHHHHHHHHHHHhccc
Q 009371 462 NGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 462 ~GIdeL~~~I~~~l~~~ 478 (536)
.|+++++++|.+.+...
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999887654
No 111
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.74 E-value=1.8e-18 Score=159.63 Aligned_cols=154 Identities=18% Similarity=0.122 Sum_probs=96.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||++++++..+.. ....++.+.....+.+ ++ ..+.+|||||..+... .....+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 77 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVV-NGATVNLGLWDTAGQEDYNR--------LRPLSY 77 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC--------CEEECCCC-CTTTT--------TGGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCeeeeeEEEEEEE-CCEEEEEEEEECCCChhhhh--------hHHhhc
Confidence 3579999999999999999999765432 1111111111111222 33 3456999999733111 112235
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---------------HHHHhccC-CC
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---------------VKLEAQKR-ED 452 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---------------~~~~~~~~-~~ 452 (536)
..+|++++|+|++++.+..... .+...+.... .+.|+++|+||+|+...... ........ .+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 156 (182)
T 3bwd_D 78 RGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPA 156 (182)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSE
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCE
Confidence 7799999999999876655543 3444444432 37899999999998765331 11111223 48
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhc
Q 009371 453 VVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 157 YIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 112
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=163.91 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=101.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE-eCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM-KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l-~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
..+|+|+|.+|||||||+|+|++..+.....+ ++.......+.+ ..+..+.+|||||...... .....+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 94 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDP-TVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI--------LPYSFII 94 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCC-CSEEEEEEEEC----CEEEEEEEECCCCTTCC--------CCGGGTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCCCC-ccceEEEEEEEECCEEEEEEEEECCCccchHH--------HHHHHHh
Confidence 35799999999999999999998765422111 111111122222 1345678999999733211 0122356
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHH-hhcCCCCCCEEEEEEcCCCCCCh-----hHHHHHhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVL-SELDVSSIPKLMIWNKVDKVCDP-----QKVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL-~~l~~~~~piIvVlNKiDl~~~~-----~~~~~~~~~~~~~v~vSAktg~GI 464 (536)
.+|++++|+|++++.+......+...+ ......++|+++|+||+|+.... ...........+++++||++|.|+
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 95 GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLT 174 (201)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 799999999999876555444333322 22233578999999999986432 111222334578999999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++++++|.+.+...
T Consensus 175 ~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 175 QGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988654
No 113
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.73 E-value=4.7e-18 Score=161.98 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=100.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+++|++..+.. ....++.+.....+.+ ++. .+.+|||||+.... ......+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~~~~~ 99 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD--------RLRPLSY 99 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT--------TTGGGGC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCCC-CcCCeecceeEEEEEE-CCEEEEEEEEECCCchhhH--------HHHHHHh
Confidence 3579999999999999999999754432 2222222222223333 444 45599999983211 1112245
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----------------HHHhc-cC
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----------------KLEAQ-KR 450 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----------------~~~~~-~~ 450 (536)
..+|++++|+|++++.+..... .+...+.... .+.|+++|+||+|+....... ..... ..
T Consensus 100 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC
Confidence 7899999999999887665553 4444444443 578999999999987653211 11111 22
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHh
Q 009371 451 EDVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 451 ~~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
.+++++||++|.|+++++++|.+.+
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999998754
No 114
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=158.85 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=99.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+|+++|.+|||||||+|+|++..+. .....++.+.....+.+ ++. .+.+|||||+...... ....+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 89 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGYP-TEYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKL--------RPLCY 89 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSS--------GGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHH--------hHhhc
Confidence 357999999999999999999987532 22222222222233333 554 5669999998432111 11235
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----------------HHHHHhccCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----------------KVKLEAQKRE 451 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----------------~~~~~~~~~~ 451 (536)
..+|++++|+|++++.+..... .+...+.... .+.|+++|+||+|+..... ..........
T Consensus 90 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 7899999999999876655543 3333333322 3789999999999875311 1111112233
Q ss_pred -CEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 452 -DVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 452 -~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+++++||++|.|+++++++|.+.+..
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999887654
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.73 E-value=3.7e-17 Score=151.86 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=97.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeeccccccc--chhhHHHHHHHhH-HH-
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK--LPTTLVAAFRATL-EE- 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~--lp~~l~e~f~~tl-~e- 388 (536)
++|+++|.+|||||||+|+|++..+.....++.|.... .+.+ + .+.+|||||+... .+....+.+.... ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999998765554454444332 2333 2 6889999996321 1111122333221 22
Q ss_pred ---HHhccceEEEEeCCCcchHHHH-HHHH---------HHHhhcCCCCCCEEEEEEcCCCCCChh-HHHH-HhccC---
Q 009371 389 ---ISESSLLVHVVDISHPLAEQQI-EAVD---------KVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKL-EAQKR--- 450 (536)
Q Consensus 389 ---i~~aDliLlVvD~s~~~~~~~~-~~v~---------~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~-~~~~~--- 450 (536)
...++++++|+|.++. ... ..+. .++..+...+.|+++|+||+|+..... .... .....
T Consensus 77 ~~~~~~~~~v~~v~d~~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAA---PEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHGGGCCEEEEEEETTHH---HHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG
T ss_pred HhhhccCCEEEEEEcchhh---hhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh
Confidence 3334566666665432 111 1111 122222234789999999999987642 1111 11112
Q ss_pred ----CCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 451 ----EDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 451 ----~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
.+++++||++|.|+++++++|.+.+...
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 2479999999999999999999887654
No 116
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=1.2e-17 Score=178.79 Aligned_cols=164 Identities=21% Similarity=0.305 Sum_probs=111.9
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhh--HHHHH--HHh
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT--LVAAF--RAT 385 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~--l~e~f--~~t 385 (536)
+.++|+|+|++|||||||+|+|+|.... +.+.+++|.++..+.+.+ +|..+.+|||||+.+..... ..+.| ..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 3468999999999999999999997643 566677777777777776 78899999999984322110 01111 223
Q ss_pred HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH----HH----HH--hccCCCEEE
Q 009371 386 LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK----VK----LE--AQKREDVVC 455 (536)
Q Consensus 386 l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~----~~----~~--~~~~~~~v~ 455 (536)
+..+..+|++++|+|++.+...++.. +...+.. .++|+++|+||+|+...... .. .. .....++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQR-MAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 55678899999999999876655433 3333333 46899999999999864321 11 11 123568999
Q ss_pred EeccCCCCHHHHHHHHHHHhcccc
Q 009371 456 ISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 456 vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
+||++|.|+++|++.|.+.+....
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999998876543
No 117
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=5.4e-18 Score=182.23 Aligned_cols=161 Identities=27% Similarity=0.328 Sum_probs=101.4
Q ss_pred CCCCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHH-HhHH
Q 009371 310 VPVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFR-ATLE 387 (536)
Q Consensus 310 ~~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~-~tl~ 387 (536)
+..++|+|+|.+|||||||+|+|++.... +.+.++.|.+.....+.+ .+..+.+|||||+..... ...+.+. .+..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~~-~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDE-PFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTT-CSSCCEEECCCC-------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcch-HHHHHHHHHHHh
Confidence 34578999999999999999999987654 344455555555454443 577899999999853221 1123333 3556
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH-HHhccCCCEEEEeccCCCCHHH
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK-LEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~-~~~~~~~~~v~vSAktg~GIde 466 (536)
.+..+|++|+|+|+..+....+.. +..++.. .++|+++|+||+|+........ ........++++||++|.|+++
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~-l~~~l~~---~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEE-VAKILYR---TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHH-HHHHHTT---CCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred hHhhCCEEEEEEeCCCCCChHHHH-HHHHHHH---cCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHH
Confidence 678899999999998877666543 3333433 5789999999999875432111 1122334678999999999999
Q ss_pred HHHHHHHHhc
Q 009371 467 FCSAVQEKLK 476 (536)
Q Consensus 467 L~~~I~~~l~ 476 (536)
|++++.+.+.
T Consensus 175 L~~~i~~~l~ 184 (456)
T 4dcu_A 175 LLDAVAEHFK 184 (456)
T ss_dssp HHHHHHTTGG
T ss_pred HHHHHHhhcc
Confidence 9999998775
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.73 E-value=1.1e-17 Score=158.05 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=103.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEE--E--eCCeeEEEeecccccccchhhHHHHHHHhHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQ--M--KNGGEFLLTDTVGFIQKLPTTLVAAFRATLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~--l--~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ 387 (536)
..+|+++|.+|||||||++++.+..... ...+.+.+...+. + .....+.+|||||.......... ...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~~ 91 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD-----YEM 91 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----ccc
Confidence 4689999999999999999998853221 2233344433333 2 13357899999997331111000 023
Q ss_pred HHHhccceEEEEeCCCcchHHHHHHHHHHHhhc--CCCCCCEEEEEEcCCCCCChhH------H-----H-HHh----cc
Q 009371 388 EISESSLLVHVVDISHPLAEQQIEAVDKVLSEL--DVSSIPKLMIWNKVDKVCDPQK------V-----K-LEA----QK 449 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l--~~~~~piIvVlNKiDl~~~~~~------~-----~-~~~----~~ 449 (536)
.+..+|++++|+|++++ ..+....+..++..+ ...+.|+++|+||+|+...... . . ... ..
T Consensus 92 ~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 45789999999999987 344455555666654 3457899999999998763211 0 0 111 23
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHh
Q 009371 450 REDVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 450 ~~~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
..+++++||++ .|++++++.|.+.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 45799999999 99999999998754
No 119
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.73 E-value=3.3e-17 Score=154.98 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=103.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
..+|+++|.+|||||||+|++++... .......++.+.....+.+ +|. .+.+|||+|..... ..+. ...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~-----~~~~--~~~ 77 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGEN-----EWLH--DHC 77 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC---------CTTG--GGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchh-----hhHH--Hhh
Confidence 35799999999999999999996432 2222333333434455555 555 45689999963210 0011 123
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCChh----H-HHHHhccCCCEEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDPQ----K-VKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~~----~-~~~~~~~~~~~v~vSAktg~ 462 (536)
+..+|++++|+|+++..+......+...+... ...+.|+++|+||+|+..... . .........+++++||++|.
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 46789999999999876655555444444443 234789999999999864211 1 11112234689999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
|+++++++|.+.+..
T Consensus 158 ~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 158 NVKELFEGIVRQVRL 172 (192)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987743
No 120
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.9e-17 Score=159.12 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=102.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
..+|+|+|.+|||||||+|++++.... ......++.+.....+.+ +|. .+.+|||+|.... ...+. ...
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~-----~~~l~--~~~ 108 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGE-----NEWLH--DHC 108 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHH-----HHHHH--HCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcch-----hhhHH--HHH
Confidence 357999999999999999999975432 222222233333444555 555 4578999997210 11111 112
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhc-CCCCCCEEEEEEcCCCCCCh----hH-HHHHhccCCCEEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSEL-DVSSIPKLMIWNKVDKVCDP----QK-VKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l-~~~~~piIvVlNKiDl~~~~----~~-~~~~~~~~~~~v~vSAktg~ 462 (536)
+..+|++++|+|+++..+......+...+... ...++|+|+|+||+|+.... +. .........+++++||++|.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 45689999999999876655554444434332 23478999999999996421 11 11112334689999999999
Q ss_pred CHHHHHHHHHHHhc
Q 009371 463 GLDEFCSAVQEKLK 476 (536)
Q Consensus 463 GIdeL~~~I~~~l~ 476 (536)
|+++++++|.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 121
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.73 E-value=5.3e-17 Score=154.81 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=96.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC--CeeEEEeecccccccchhhHHHHHHH--hHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN--GGEFLLTDTVGFIQKLPTTLVAAFRA--TLE 387 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~--g~~i~LiDTpG~i~~lp~~l~e~f~~--tl~ 387 (536)
.++|+++|.+|||||||+++|++..+. .... +.......+.+.+ +..+.+|||||+. .+.. ...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 74 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYR-DTQT--SITDSSAIYKVNNNRGNSLTLIDLPGHE---------SLRFQLLDR 74 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCC-CBCC--CCSCEEEEEECSSTTCCEEEEEECCCCH---------HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-cccC--CcceeeEEEEecCCCccEEEEEECCCCh---------hHHHHHHHH
Confidence 357999999999999999999976543 2222 2222333355432 5679999999982 2222 223
Q ss_pred HHHhccceEEEEeCCCcch--HHHHHHHHHHHhh--cCCCCCCEEEEEEcCCCCCChhH------HHHH-----------
Q 009371 388 EISESSLLVHVVDISHPLA--EQQIEAVDKVLSE--LDVSSIPKLMIWNKVDKVCDPQK------VKLE----------- 446 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~~--~~~~~~v~~vL~~--l~~~~~piIvVlNKiDl~~~~~~------~~~~----------- 446 (536)
.+..+|++++|+|+++... ......+...+.. ....+.|+++|+||+|+...... +...
T Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 154 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAA 154 (214)
T ss_dssp HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhc
Confidence 3678999999999987321 1222333333332 22346899999999999764211 0000
Q ss_pred ------------hcc-------------CCCEEEEeccCC------CCHHHHHHHHHHH
Q 009371 447 ------------AQK-------------REDVVCISALSG------NGLDEFCSAVQEK 474 (536)
Q Consensus 447 ------------~~~-------------~~~~v~vSAktg------~GIdeL~~~I~~~ 474 (536)
... ..+++++||++| .|+++++++|.+.
T Consensus 155 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 155 PSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 000 446899999999 9999999999875
No 122
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.72 E-value=1.6e-17 Score=179.89 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=110.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
.+|+|+|.+|||||||+|+|++..+. ..+.|.+.+...+.+ ++..+.+|||||...... .+...+..+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~---~~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~--------~~~~~~~~a 390 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTY-KNVKFNVWDVGGQDKIRP--------LWRHYYTGT 390 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC---CCCCCSSEEEEEEES-SSCEEEEEEECCCGGGSG--------GGGGGGTTC
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC---CcCCccceeEEEEEe-CCEEEEEEECCCcHHHHH--------HHHHHhccC
Confidence 57999999999999999999987632 123466666666665 678999999999732211 123346789
Q ss_pred cceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHhc------cCCCEEEEeccCCCC
Q 009371 393 SLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEAQ------KREDVVCISALSGNG 463 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~~------~~~~~v~vSAktg~G 463 (536)
|++|+|+|++++....... .+..++......++|+|+|+||+|+..... ....... ...+++++||++|.|
T Consensus 391 d~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 470 (497)
T 3lvq_E 391 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470 (497)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBT
T ss_pred CEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCC
Confidence 9999999999986554433 334444444446899999999999976422 1111111 123599999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 009371 464 LDEFCSAVQEKLKDSM 479 (536)
Q Consensus 464 IdeL~~~I~~~l~~~~ 479 (536)
|++++++|.+.+....
T Consensus 471 i~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 471 LYEGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999987654
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=7.5e-18 Score=160.56 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=100.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++..+.... ..++.+.....+.+ ++ ..+.+|||||...... .....+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 95 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVY-VPTVFENYVADIEV-DGKQVELALWDTAGQEDYDR--------LRPLSYP 95 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTT--------TGGGGCT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCcC-CCcccceEEEEEEE-CCEEEEEEEEECCCcHHHHH--------HHHhhcC
Confidence 47999999999999999999987654221 11111212233333 44 3678999999743211 1112356
Q ss_pred hccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH-----------------HHhccCC-
Q 009371 391 ESSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK-----------------LEAQKRE- 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~-----------------~~~~~~~- 451 (536)
.+|++++|+|++++.+.... ..+...+.... .+.|+++|+||+|+........ .......
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (207)
T 2fv8_A 96 DTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY 174 (207)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC
Confidence 79999999999987654444 33444444432 4789999999999976532110 1111223
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+++++||++|.|+++++++|.+.+..
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999987654
No 124
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=171.91 Aligned_cols=183 Identities=19% Similarity=0.187 Sum_probs=109.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH------------HHHHhccccCCCCCCEEEEEccCCCChHHHHHhhhCCc------c
Q 009371 276 EVDKRILRTQIGVLKKELESVRK------------HRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNRLTGAT------V 337 (536)
Q Consensus 276 e~drr~i~~ri~~Lk~eL~~l~~------------~r~~~r~~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~~------~ 337 (536)
+.|||.|.++|..+++.+..... .+...+..|...+.+.|+|+|+||||||||+|+|++.. +
T Consensus 26 ~~~r~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 26 QGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp TTCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcccchhhcccccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 45788888888888766655321 12223344444556789999999999999999998631 1
Q ss_pred cc--------------------------ccccccccCCeeEEEE-------------EeCCeeEEEeecccccccchhhH
Q 009371 338 LA--------------------------EDRLFATLDPTTRRVQ-------------MKNGGEFLLTDTVGFIQKLPTTL 378 (536)
Q Consensus 338 ~~--------------------------~~~~~~Tld~ttr~i~-------------l~~g~~i~LiDTpG~i~~lp~~l 378 (536)
.+ .+..+.+..++...+. -..+.++.++||||+... .
T Consensus 106 ~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~--~-- 181 (349)
T 2www_A 106 SVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQS--E-- 181 (349)
T ss_dssp EEEECCC----------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCCC--C--H--
T ss_pred EEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHHHHHHHHhhccCCCCEEEEECCCcchh--h--
Confidence 11 0111222111111110 025678999999998422 1
Q ss_pred HHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HHHH---h-----
Q 009371 379 VAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VKLE---A----- 447 (536)
Q Consensus 379 ~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~~~---~----- 447 (536)
.+ ....+|++++|+|++.+...+. +.. +....|.++|+||+|+.+.... .... .
T Consensus 182 -----~~--l~~~~d~vl~V~d~~~~~~~~~---i~~-----~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~ 246 (349)
T 2www_A 182 -----FA--VADMVDMFVLLLPPAGGDELQG---IKR-----GIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRK 246 (349)
T ss_dssp -----HH--HHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-
T ss_pred -----hh--HHhhCCEEEEEEcCCcchhHHH---hHH-----HHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCc
Confidence 11 1357999999999987532211 111 1235688999999998743211 1111 0
Q ss_pred ---ccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 448 ---QKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 448 ---~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
...++++++||++|.|+++|+++|.+.+..
T Consensus 247 ~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 247 RSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp ----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 114578999999999999999999987753
No 125
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.71 E-value=3.5e-17 Score=166.85 Aligned_cols=160 Identities=23% Similarity=0.300 Sum_probs=107.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc-ccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~ 390 (536)
..|+|+|++|||||||+|+|+|..+.. .+.+.+|.+...+.+. .++..+.++||||+.......+...+.. +...+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE-ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE-ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 469999999999999999999987643 3334444443333333 4678899999999841111111112211 234457
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH----HHHhc-cC-CCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV----KLEAQ-KR-EDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~----~~~~~-~~-~~~v~vSAktg~GI 464 (536)
.+|++++|+|+++ ....+... .+.+. ..+.|+++|+||+|+....... ..... .. .+++++||++|.|+
T Consensus 88 ~~D~vl~Vvd~~~-~~~~~~~i-~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 88 DVELVIFVVEGTR-WTPDDEMV-LNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CEEEEEEEEETTC-CCHHHHHH-HHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred cCCEEEEEEeCCC-CCHHHHHH-HHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 7899999999987 55544332 22333 3478999999999998632211 11212 22 36899999999999
Q ss_pred HHHHHHHHHHhccc
Q 009371 465 DEFCSAVQEKLKDS 478 (536)
Q Consensus 465 deL~~~I~~~l~~~ 478 (536)
++|+++|.+.+...
T Consensus 163 ~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 163 DTIAAIVRKHLPEA 176 (301)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHHhCCcC
Confidence 99999999887654
No 126
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.71 E-value=1.5e-17 Score=158.48 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=105.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC--eeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG--GEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g--~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|||||||+++|++..+. .+...++.+.....+.+ ++ ..+.+|||||+..... + ....+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--~------~~~~~~ 79 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR--L------RPLSYR 79 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------CGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH--H------HHhhcc
Confidence 57999999999999999999976543 22222222333334444 44 3788999999843211 0 112357
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------------HH-HHhccC-CCEEE
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------------VK-LEAQKR-EDVVC 455 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------------~~-~~~~~~-~~~v~ 455 (536)
.+|++++|+|++++.+..... .+...+.... .+.|+++|+||+|+...... .. ...... .++++
T Consensus 80 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (212)
T 2j0v_A 80 GADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE 158 (212)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEE
Confidence 899999999999876655443 3434444332 37899999999998764321 11 111223 48999
Q ss_pred EeccCCCCHHHHHHHHHHHhcccc
Q 009371 456 ISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 456 vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
+||++|.|+++++++|.+.+....
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred ccCCCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999999886543
No 127
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.71 E-value=4.2e-17 Score=161.35 Aligned_cols=165 Identities=16% Similarity=0.095 Sum_probs=107.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccc--cccCCeeEEEEEeCCeeEEEeecccccccchhh----HHHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLF--ATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT----LVAAFRAT 385 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~--~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~----l~e~f~~t 385 (536)
..+|+|+|.+|||||||+|+|++..+......+ +|.......+.. ++..+.+|||||+.+..... ........
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 357999999999999999999998776544433 445555555554 78899999999996532211 11111222
Q ss_pred HHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCC--CCCCEEEEEEcCCCCCChh----------HHHH-HhccCCC
Q 009371 386 LEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDV--SSIPKLMIWNKVDKVCDPQ----------KVKL-EAQKRED 452 (536)
Q Consensus 386 l~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~--~~~piIvVlNKiDl~~~~~----------~~~~-~~~~~~~ 452 (536)
......+|++|+|+|++. ....+...+..+.+.++. .+.|+|+|.||+|+..... .+.. .......
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~ 178 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR 178 (247)
T ss_dssp HHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe
Confidence 233478999999999985 445554545544444332 3679999999999975421 1111 1122345
Q ss_pred EEEEeccC-----CCCHHHHHHHHHHHhccc
Q 009371 453 VVCISALS-----GNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 453 ~v~vSAkt-----g~GIdeL~~~I~~~l~~~ 478 (536)
++.+++.. +.|+++|++.|.+.+...
T Consensus 179 ~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 179 VCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 66666554 589999999999998753
No 128
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.71 E-value=9e-18 Score=161.40 Aligned_cols=157 Identities=18% Similarity=0.131 Sum_probs=103.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeE--EEEEe-CCeeEEEeecccccccchhhHHHHHHHhHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTR--RVQMK-NGGEFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr--~i~l~-~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
..+|+++|.+|||||||+|+++...+... ...+...+.. .+... .+..+.+|||||...... .....
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~ 84 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG--------LRDGY 84 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCE--EETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC--------CCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH--------HHHHH
Confidence 35899999999999999999654332211 1112222222 22221 234688999999732111 12234
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HHHHHhccCCCEEEEeccCCCCHH
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~~~~~~~~~~~v~vSAktg~GId 465 (536)
+..+|++++|+|++++.+......+...+... ..+.|+++|+||+|+..... ..........+++++||++|.|++
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 56899999999999876655544444333333 24789999999999975421 111222345789999999999999
Q ss_pred HHHHHHHHHhcccc
Q 009371 466 EFCSAVQEKLKDSM 479 (536)
Q Consensus 466 eL~~~I~~~l~~~~ 479 (536)
+++++|.+.+....
T Consensus 164 ~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 164 KPFLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999876543
No 129
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.71 E-value=7.6e-17 Score=166.32 Aligned_cols=152 Identities=21% Similarity=0.227 Sum_probs=106.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~ 391 (536)
.+|+|+|.+|||||||+|+|++..+. .. ..|.......+.. .+..+.+|||||... |.. ....+..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~~-~~--~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~---------~~~~~~~~~~~ 232 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYFQN 232 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCCE-EE--EEETTEEEEEEEE-TTEEEEEEECC--------------CCSHHHHHTT
T ss_pred ceEEEECCCCccHHHHHHHHhCCCCC-Cc--ccccceEEEEEec-CcEEEEEEECCCCHh---------HHHHHHHHhcc
Confidence 37999999999999999999987643 22 2344444455554 678899999999622 222 2334678
Q ss_pred ccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCChh--HHHHHhc------cCCCEEEEeccCCC
Q 009371 392 SSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ--KVKLEAQ------KREDVVCISALSGN 462 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~--~~~~~~~------~~~~~v~vSAktg~ 462 (536)
+|++++|+|++++...... ..+..++......++|+++|+||+|+..... ....... ...+++++||++|.
T Consensus 233 ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 233 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 9999999999887654433 3344455544456889999999999986532 2222111 22468999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009371 463 GLDEFCSAVQEKLKD 477 (536)
Q Consensus 463 GIdeL~~~I~~~l~~ 477 (536)
||++++++|.+.+..
T Consensus 313 gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 313 GLYEGLDWLSNQLRN 327 (329)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
No 130
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=1.2e-16 Score=163.10 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=111.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc-cccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHH-HhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT-VLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFR-ATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~-~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~-~tl~ei~ 390 (536)
.+|+++|.+|||||||+|+|++.. ....+.+.+|.+.....+.+.++..+.+|||||..+. ....+. .....+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF----MENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH----HHHHHTTTHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH----hhhhhhhHHHHHhc
Confidence 469999999999999999988763 3334566777777777666656778999999998321 001111 2334457
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHH----------HHH-hcc---CCCEE
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKV----------KLE-AQK---REDVV 454 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~----------~~~-~~~---~~~~v 454 (536)
.+|++++|+|++++.+......+..++..+. ..++|+++|+||+|+....... ... ... ..+++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 8999999999999887776665555555442 3478999999999998732211 111 122 26899
Q ss_pred EEeccCCCCHHHHHHHHHHHh
Q 009371 455 CISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l 475 (536)
++||++ .|+.+++..+...+
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTT
T ss_pred EeeecC-ChHHHHHHHHHHHH
Confidence 999999 78888888877654
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.70 E-value=1.4e-17 Score=155.31 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=99.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|.+|||||||+|+|++..+.....+ +.....+..+.+.+ ...+.+|||||...... .....+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 78 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP-TVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------VRPLSYPD 78 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCC-CSEEEEEEEEECSSCEEEEEEEEECCSGGGTT--------TGGGGCTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ccceeEEEEEEECCEEEEEEEEECCCChhhhh--------hHHhhcCC
Confidence 4799999999999999999998654321111 11111223333322 24678999999732110 01123578
Q ss_pred ccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----------------hHHH-HHhcc-CCC
Q 009371 392 SSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP----------------QKVK-LEAQK-RED 452 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----------------~~~~-~~~~~-~~~ 452 (536)
+|++++|+|++++.+.... ..+...+.... .+.|+++|+||+|+.... +... ..... ..+
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 9999999999987665544 33433344332 478999999999997431 1111 11122 368
Q ss_pred EEEEecc-CCCCHHHHHHHHHHHhc
Q 009371 453 VVCISAL-SGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 453 ~v~vSAk-tg~GIdeL~~~I~~~l~ 476 (536)
++++||+ +|.|+++++++|.+.+-
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHh
Confidence 9999999 68999999999987653
No 132
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.69 E-value=1.2e-16 Score=158.04 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=104.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccc-cc-cccCCeeEEEEEeCCeeEEEeecccccccchhh--HHHH-HHHhH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDR-LF-ATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT--LVAA-FRATL 386 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-~~-~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~--l~e~-f~~tl 386 (536)
..+|+|+|++|||||||+|+|++........ +. +|.+.....+.+ ++..+.+|||||+.+..... .... .....
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999999877543322 22 344444444444 78899999999986532211 1111 22233
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCC-CCCCEEEEEE-cCCCCCChhHH----------H-HHhcc----
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDV-SSIPKLMIWN-KVDKVCDPQKV----------K-LEAQK---- 449 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~-~~~piIvVlN-KiDl~~~~~~~----------~-~~~~~---- 449 (536)
..+..+|++++|+|++. ........+..+.+.++. ...|.++|+| |+|+....... . .....
T Consensus 101 ~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 179 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRI 179 (260)
T ss_dssp HHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred hcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeE
Confidence 45678999999999986 333333333322222221 1357888887 99997542110 0 11111
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 450 --REDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 450 --~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
..+ +++||++|.|+++++++|.+.+...
T Consensus 180 ~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 180 CAFNN-RAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp EECCT-TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecC-cccccccHHHHHHHHHHHHHHHHhC
Confidence 112 7899999999999999999988764
No 133
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.69 E-value=1.6e-16 Score=159.54 Aligned_cols=163 Identities=20% Similarity=0.255 Sum_probs=102.6
Q ss_pred CCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCe-----------------------eE-------------
Q 009371 309 SVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPT-----------------------TR------------- 352 (536)
Q Consensus 309 ~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~t-----------------------tr------------- 352 (536)
....++|+|+|.+|||||||+|+|+|..+........+..++ +.
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999998763111111111111 10
Q ss_pred ---------------EEEEeCCeeEEEeecccccccc----hhhHHHHHHH-hHHHHHhccceE-EEEeCCCcchHHHHH
Q 009371 353 ---------------RVQMKNGGEFLLTDTVGFIQKL----PTTLVAAFRA-TLEEISESSLLV-HVVDISHPLAEQQIE 411 (536)
Q Consensus 353 ---------------~i~l~~g~~i~LiDTpG~i~~l----p~~l~e~f~~-tl~ei~~aDliL-lVvD~s~~~~~~~~~ 411 (536)
.+..+++..+.+|||||+.... +......+.. +..++..++.++ +|+|++++....+..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0111224689999999986422 2322223333 344556677555 799998876544322
Q ss_pred HHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HHHHHhc---c----CCCEEEEeccCCCCHHHHHHHHHHH
Q 009371 412 AVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKLEAQ---K----REDVVCISALSGNGLDEFCSAVQEK 474 (536)
Q Consensus 412 ~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~~~~---~----~~~~v~vSAktg~GIdeL~~~I~~~ 474 (536)
.++..+...+.|+++|+||+|+..... ....... . ..+++++||++|.|+++++++|.+.
T Consensus 183 ---~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 ---KIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp ---HHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred ---HHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 234444445789999999999976432 1111111 1 2357889999999999999998773
No 134
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.69 E-value=1.8e-16 Score=171.73 Aligned_cols=152 Identities=23% Similarity=0.252 Sum_probs=105.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCc-------cccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGAT-------VLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA 384 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~-------~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~ 384 (536)
.++|+++|++|+|||||+|+|++.. ...+...+.|.+.....+.+ ++..+.+|||||+ ......
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh--------~~~~~~ 89 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGH--------ADLIRA 89 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSH--------HHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCCh--------HHHHHH
Confidence 3589999999999999999999876 12223334555555555555 6789999999998 223345
Q ss_pred hHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH------HHHHh-----ccCCCE
Q 009371 385 TLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK------VKLEA-----QKREDV 453 (536)
Q Consensus 385 tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~------~~~~~-----~~~~~~ 453 (536)
+...+..+|++++|+|++++...+..+.+. ++.. .++|.|+|+||+|+.+.... ..... ....++
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGPKTQTGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHhhCCEEEEEEecCCCccHHHHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 666778899999999999876665555443 3333 36788999999999863211 11111 114689
Q ss_pred EEEeccCCCCHHHHHHHHHHHhc
Q 009371 454 VCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 454 v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
+++||++|.|+++|+++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999764
No 135
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.68 E-value=1.8e-16 Score=148.27 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=93.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCe--eEEEEE----eCCeeEEEeecccccccchhhHHHHHHH-h
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPT--TRRVQM----KNGGEFLLTDTVGFIQKLPTTLVAAFRA-T 385 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~t--tr~i~l----~~g~~i~LiDTpG~i~~lp~~l~e~f~~-t 385 (536)
.+|+++|++|||||||+|+|++...........|.... ...+.+ .....+.+|||+|.. .+.. .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~ 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE---------EFYSTH 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH---------HHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH---------HHHHhh
Confidence 46999999999999999999985211111111122111 111111 124478899999972 2222 2
Q ss_pred HHHHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHH-------HHHh-ccCCC--
Q 009371 386 LEEISESSLLVHVVDISHPL-AEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKV-------KLEA-QKRED-- 452 (536)
Q Consensus 386 l~ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~-------~~~~-~~~~~-- 452 (536)
...+..+|++++|+|++++. +.... ..++..+. ..+.|+++|+||+|+....... .... ....+
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~---~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAM---KPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTH---HHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHH---HHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 23456789999999998863 22222 23333221 2478999999999997643211 1111 12344
Q ss_pred --EEEEeccCCC-CHHHHHHHHHHHhccc
Q 009371 453 --VVCISALSGN-GLDEFCSAVQEKLKDS 478 (536)
Q Consensus 453 --~v~vSAktg~-GIdeL~~~I~~~l~~~ 478 (536)
++++||++|. |+++|++.|.+.+...
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 8999999997 9999999998877654
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.68 E-value=2.3e-17 Score=175.88 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=108.8
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEI 389 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei 389 (536)
..+.|+|+|++|+|||||+|+|++..+. ..+..++|.++....+.+.+...+.+|||||+.+..... ...+..+...+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~-~~~~~~~~~~l 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG-RLRVEKARRVF 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC-CCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh-HHHHHHHHHHH
Confidence 3468999999999999999999998763 456677788888888887555589999999996432111 11234456677
Q ss_pred HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-H-HHH-hccCCCEEEEeccCCCCHHH
Q 009371 390 SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-V-KLE-AQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-~-~~~-~~~~~~~v~vSAktg~GIde 466 (536)
..+|++++|+|++. .... ..+...+.. .++|+++|+||+|+...... . ... .....+++++||++|.|+++
T Consensus 112 ~~aD~vllVvD~~~--~~~~-~~~l~~l~~---~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~e 185 (423)
T 3qq5_A 112 YRADCGILVTDSAP--TPYE-DDVVNLFKE---MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDD 185 (423)
T ss_dssp TSCSEEEEECSSSC--CHHH-HHHHHHHHH---TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTT
T ss_pred hcCCEEEEEEeCCC--hHHH-HHHHHHHHh---cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 88999999999932 2332 223333443 37899999999999875432 1 111 12356899999999999999
Q ss_pred HHHHHHHHhcc
Q 009371 467 FCSAVQEKLKD 477 (536)
Q Consensus 467 L~~~I~~~l~~ 477 (536)
++++|.+.+..
T Consensus 186 L~~~L~~~l~~ 196 (423)
T 3qq5_A 186 IGKTISEILPG 196 (423)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHhhhh
Confidence 99999999854
No 137
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.68 E-value=2e-16 Score=149.72 Aligned_cols=156 Identities=22% Similarity=0.204 Sum_probs=105.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|++|||||||+++|++..+.....+..+.+...+.+.+ +|. .+.+|||+|...... .....+.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~--------~~~~~~~ 76 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR--------ITSAYYR 76 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC--------CCHHHHT
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh--------hhHHHHh
Confidence 57999999999999999999987654433333334445566666 564 567899999732110 0122345
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.+|++++|+|+++..+......+...+......+.|+++|+||+|+.... . ...........++.+||+++.|++
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 77 GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 78999999999887654444333333333333468999999999986421 1 112222345678899999999999
Q ss_pred HHHHHHHHHhcc
Q 009371 466 EFCSAVQEKLKD 477 (536)
Q Consensus 466 eL~~~I~~~l~~ 477 (536)
+++++|.+.+..
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 138
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.68 E-value=3.1e-17 Score=157.06 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=99.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC-CeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN-GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~-g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.+|+++|.+|||||||+|+|++..+.....+ +.....+..+.+.+ ...+.+|||||...... .....+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 99 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP-TVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------VRPLSYPD 99 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCC-CSEEEEEEEEESSSSEEEEEEEEECCSGGGTT--------TGGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-ccceeEEEEEEECCEEEEEEEEeCCCcHhhhH--------HHHhhccC
Confidence 4799999999999999999998755322111 11111223333322 24688999999732110 01123578
Q ss_pred ccceEEEEeCCCcchHHHH-HHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----------------hHHHH-Hhcc-CCC
Q 009371 392 SSLLVHVVDISHPLAEQQI-EAVDKVLSELDVSSIPKLMIWNKVDKVCDP----------------QKVKL-EAQK-RED 452 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~-~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----------------~~~~~-~~~~-~~~ 452 (536)
+|++++|+|++++.+.... ..+...+.... .+.|+++|+||+|+.... +.... .... ..+
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999987655544 33433344332 478999999999997431 11111 1122 358
Q ss_pred EEEEecc-CCCCHHHHHHHHHHHhc
Q 009371 453 VVCISAL-SGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 453 ~v~vSAk-tg~GIdeL~~~I~~~l~ 476 (536)
++++||+ +|.|+++++++|.+.+-
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHh
Confidence 9999999 68999999999987653
No 139
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.68 E-value=1.1e-16 Score=169.31 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=102.9
Q ss_pred CCCCEEEEEccCCCChHHHHHhhhCCcccc-cccccccc--------------CCeeEEEEE----eCCeeEEEeecccc
Q 009371 310 VPVPVVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATL--------------DPTTRRVQM----KNGGEFLLTDTVGF 370 (536)
Q Consensus 310 ~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tl--------------d~ttr~i~l----~~g~~i~LiDTpG~ 370 (536)
.+..+|+++|++|+|||||+|+|++..... .+....+. +........ .....+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 345689999999999999999999853221 00000000 000000000 01257899999998
Q ss_pred cccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHH---H-
Q 009371 371 IQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVK---L- 445 (536)
Q Consensus 371 i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~---~- 445 (536)
. .....+...+..+|++++|+|++++. ..+..+. ...+..++. .|+++|+||+|+.+...... .
T Consensus 86 ~--------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~-~~~~~~~~~--~~iivviNK~Dl~~~~~~~~~~~~i 154 (403)
T 3sjy_A 86 E--------VLMATMLSGAALMDGAILVVAANEPFPQPQTREH-FVALGIIGV--KNLIIVQNKVDVVSKEEALSQYRQI 154 (403)
T ss_dssp G--------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHH-HHHHHHHTC--CCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHH-HHHHHHcCC--CCEEEEEECccccchHHHHHHHHHH
Confidence 2 22344566778899999999999876 3443333 344555542 58999999999987542111 1
Q ss_pred --Hh----ccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 446 --EA----QKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 446 --~~----~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
.. ....+++++||++|.|+++|+++|.+.+..
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 11 125689999999999999999999987754
No 140
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.68 E-value=1.6e-16 Score=161.21 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=102.0
Q ss_pred CCCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCC----eeE--------------------------------
Q 009371 309 SVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDP----TTR-------------------------------- 352 (536)
Q Consensus 309 ~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~----ttr-------------------------------- 352 (536)
....|.|+|+|.+|||||||+|+|+|..+...+....|..+ +++
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 35678999999999999999999999876322221122222 111
Q ss_pred ---------------------E--EEEeCCeeEEEeeccccccc----chhhHHHHH-HHhHHHHHhccceEEEEeCC-C
Q 009371 353 ---------------------R--VQMKNGGEFLLTDTVGFIQK----LPTTLVAAF-RATLEEISESSLLVHVVDIS-H 403 (536)
Q Consensus 353 ---------------------~--i~l~~g~~i~LiDTpG~i~~----lp~~l~e~f-~~tl~ei~~aDliLlVvD~s-~ 403 (536)
. +..+++..+.+|||||+.+. .+..+...+ ..+...+..+|++++|+|++ .
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 0 12234568999999999641 112222333 33556778999999999974 3
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-HHHHHhc--cC--CCEEEE---eccC---CCCHHHHHHHHH
Q 009371 404 PLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKLEAQ--KR--EDVVCI---SALS---GNGLDEFCSAVQ 472 (536)
Q Consensus 404 ~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~~~~--~~--~~~v~v---SAkt---g~GIdeL~~~I~ 472 (536)
.....+.. .++..+...+.|+++|+||+|+..... ....... .. .+++++ ||.+ +.|++++++.+.
T Consensus 181 ~~~~~~~~---~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 181 DLANSDAL---QLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp CSTTCSHH---HHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred chhhhHHH---HHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 33222211 233334445789999999999986543 1222211 11 345554 5555 799999999999
Q ss_pred HHhcccc
Q 009371 473 EKLKDSM 479 (536)
Q Consensus 473 ~~l~~~~ 479 (536)
+.+....
T Consensus 258 ~~~~~~~ 264 (315)
T 1jwy_B 258 LYFKNHP 264 (315)
T ss_dssp HHHHTCT
T ss_pred HHHhCCC
Confidence 9887653
No 141
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.68 E-value=1.2e-16 Score=160.10 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=90.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccc------ccccCCeeEEEEEe-CCe--eEEEeeccccccc---------c
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRL------FATLDPTTRRVQMK-NGG--EFLLTDTVGFIQK---------L 374 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~------~~Tld~ttr~i~l~-~g~--~i~LiDTpG~i~~---------l 374 (536)
.+|+++|++|+|||||+|+|++.+....+.+ ..|.........+. +|. .+.+|||||+.+. +
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 5799999999999999999998877655442 44555554544442 332 7899999999432 1
Q ss_pred hhhHHHHHHHhHHHH----------HhccceEEEEeCCC-cchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH
Q 009371 375 PTTLVAAFRATLEEI----------SESSLLVHVVDISH-PLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV 443 (536)
Q Consensus 375 p~~l~e~f~~tl~ei----------~~aDliLlVvD~s~-~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~ 443 (536)
.+.+...|...+.+- ..+|+++++++.+. +....+... ++.+.. ++|+|+|+||+|+....+..
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~----l~~l~~-~~pvi~V~nK~D~~~~~e~~ 163 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEF----MKRLHE-KVNIIPLIAKADTLTPEECQ 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHH----HHHHTT-TSCEEEEESSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHH----HHHHhc-cCCEEEEEeccCCCCHHHHH
Confidence 222233344444331 12568888887654 555555443 333333 78999999999998643321
Q ss_pred H-------HHhccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 444 K-------LEAQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 444 ~-------~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
. .......+++++||++|+|+++++++|.+.+.-
T Consensus 164 ~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 164 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 1 112345678899999999999999999887653
No 142
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.50 E-value=3e-18 Score=162.52 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=96.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG--EFLLTDTVGFIQKLPTTLVAAFRA-TLEEI 389 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~--~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei 389 (536)
.+|+++|.+|||||||+++|++..+.. ....++.+.....+.. ++. .+.+|||||..+ +.. ....+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 99 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQED---------YDRLRPLSY 99 (204)
Confidence 469999999999999999998765432 2222222222222333 333 456999999722 211 22345
Q ss_pred HhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----------H------HHHhccCC
Q 009371 390 SESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----------V------KLEAQKRE 451 (536)
Q Consensus 390 ~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----------~------~~~~~~~~ 451 (536)
..+|++++|+|++++.+..... .+...+.... .+.|+++|+||+|+...... . ........
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 3th5_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
Confidence 7899999999998876554432 2322332221 27899999999999754210 0 00011123
Q ss_pred -CEEEEeccCCCCHHHHHHHHHHHh
Q 009371 452 -DVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 452 -~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
+++++||++|.|+++++++|.+.+
T Consensus 179 ~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 789999999999999999987643
No 143
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.67 E-value=2.3e-16 Score=159.93 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=101.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeE--EEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEF--LLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i--~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+++|.+|+|||||++++++..+. .....++.+.....+.. ++..+ .+|||||..... ......+.
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 225 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD--------RLRPLSYP 225 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT--------TTGGGGCT
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhh--------HHHHHhcc
Confidence 57999999999999999999876542 22222222222233333 55544 499999973211 11122357
Q ss_pred hccceEEEEeCCCcchHHHHH-HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH-----------------HHHhccC-C
Q 009371 391 ESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV-----------------KLEAQKR-E 451 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~-----------------~~~~~~~-~ 451 (536)
.+|++++|+|++++.+..... .+...+.... .++|+++|+||+|+....... ....... .
T Consensus 226 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 304 (332)
T 2wkq_A 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 304 (332)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence 899999999999876655543 3333444332 278999999999986542110 1111223 3
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
+++++||++|.|+++++++|.+.+.
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHh
Confidence 8999999999999999999988764
No 144
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=4.1e-16 Score=152.45 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=103.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccccccc--ccccCCeeEEEEEeCCeeEEEeecccccccch--hhHHHHHHHh-H
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRL--FATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP--TTLVAAFRAT-L 386 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~--~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp--~~l~e~f~~t-l 386 (536)
.++|+|+|++|||||||+|+|+|..+...+.+ +.|.......+.+ ++..+.+|||||+.+... ......+... .
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999877655554 4555666566655 788999999999864321 1112233332 2
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCC-CCCCEEEEEEcCCCCCChhH----------HH-HHhccCCCEE
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDV-SSIPKLMIWNKVDKVCDPQK----------VK-LEAQKREDVV 454 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~-~~~piIvVlNKiDl~~~~~~----------~~-~~~~~~~~~v 454 (536)
..+..+|++|+|+|+++... .+...+..+++.++. ...|+++|+||+|+...... .. ........++
T Consensus 108 ~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~ 186 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYC 186 (239)
T ss_dssp HTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEE
T ss_pred hcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEE
Confidence 33456799999999975433 444455555443322 24599999999998754211 11 1112234577
Q ss_pred EEeccCC-----CCHHHHHHHHHHHhcc
Q 009371 455 CISALSG-----NGLDEFCSAVQEKLKD 477 (536)
Q Consensus 455 ~vSAktg-----~GIdeL~~~I~~~l~~ 477 (536)
.+++..+ .|+.+|++.|.+.+..
T Consensus 187 ~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 187 ALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 7776644 6888899888887754
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.67 E-value=2.8e-16 Score=167.24 Aligned_cols=162 Identities=31% Similarity=0.408 Sum_probs=119.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhh--HHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTT--LVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~--l~e~f~~tl~ei~ 390 (536)
..|+|+|++|||||||+|+|++....+.+++++|+.++.+.+.+.+...+.++||||++...... +... .+..+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~---fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE---FLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH---HHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHH---HHHHHH
Confidence 46999999999999999999998777788899999998888877444789999999997532211 1111 234456
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCCCCChhHHHH----HhccCCCEEEEeccCCCCH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDKVCDPQKVKL----EAQKREDVVCISALSGNGL 464 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl~~~~~~~~~----~~~~~~~~v~vSAktg~GI 464 (536)
.++.+++|+|++ .....++..+.+.+..+. ....|.++|+||+|+... ..... ......+++++||++++|+
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 799999999997 333444444443333332 235799999999998764 22211 1223468999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 009371 465 DEFCSAVQEKLKDSM 479 (536)
Q Consensus 465 deL~~~I~~~l~~~~ 479 (536)
++|+++|.+.+....
T Consensus 313 ~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 313 PALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987654
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.65 E-value=1.1e-15 Score=161.89 Aligned_cols=155 Identities=21% Similarity=0.224 Sum_probs=105.5
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc---cccccccccCCeeEEEEEeC----------------------CeeEEEee
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATLDPTTRRVQMKN----------------------GGEFLLTD 366 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tld~ttr~i~l~~----------------------g~~i~LiD 366 (536)
..+|+++|++|+|||||+++|+|.... .......|++.......+.. ...+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 457999999999999999999975321 11123335544333322210 15789999
Q ss_pred cccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---
Q 009371 367 TVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--- 442 (536)
Q Consensus 367 TpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--- 442 (536)
|||+. .....+...+..+|++++|+|++++. ..+..+.+. .+..++ ..|+++|+||+|+......
T Consensus 90 tPGh~--------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~~~--~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 90 APGHE--------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-ALQIIG--QKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp CSSHH--------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HHHHHT--CCCEEEEEECGGGSCHHHHHHH
T ss_pred CCChH--------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HHHHcC--CCcEEEEEECccCCCHHHHHHH
Confidence 99981 22344556677889999999999765 445444443 344444 2589999999999874321
Q ss_pred ---HHHHhc----cCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 443 ---VKLEAQ----KREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 443 ---~~~~~~----~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
...... ...+++++||++|.|+++|+++|.+.+..
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 111111 35689999999999999999999987753
No 147
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.65 E-value=2.9e-16 Score=171.94 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=81.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc----------------c------ccccccccCCeeEEEEEeCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL----------------A------EDRLFATLDPTTRRVQMKNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~----------------~------~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~ 370 (536)
++|+|+|++|||||||+|+|++.... . ....+.|.......+.+ ++..+.||||||+
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTPG~ 92 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCCCS
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECCCc
Confidence 46999999999999999999621100 0 11234455555555665 7889999999998
Q ss_pred cccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 371 IQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 371 i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
.+.. ..+...+..+|++|+|+|++++...+....+..+ . ..++|+++|+||+|+...
T Consensus 93 ~df~--------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~-~---~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 93 ADFT--------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVC-R---LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTCC--------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHH-H---TTTCCEEEEEECTTSCCS
T ss_pred hhHH--------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-H---HcCCCEEEEEeCCCCccc
Confidence 4422 2344557889999999999998777666554433 2 247899999999999754
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.64 E-value=6.1e-16 Score=145.95 Aligned_cols=154 Identities=22% Similarity=0.214 Sum_probs=104.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCee--EEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGE--FLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~--i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
.+|+|+|++|||||||+++|++..+.....+..+.+...+.+.+ +|.. +.+|||+|..+.... ....+.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~--------~~~~~~ 100 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI--------TSAYYR 100 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC--------CHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh--------hHHHhh
Confidence 57999999999999999999987665444444444445666666 6654 457999997432111 112346
Q ss_pred hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh----h-HHHHHhccCCCEEEEeccCCCCHH
Q 009371 391 ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP----Q-KVKLEAQKREDVVCISALSGNGLD 465 (536)
Q Consensus 391 ~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~----~-~~~~~~~~~~~~v~vSAktg~GId 465 (536)
.++.+++|+|.++..+.+....+...+......+.|+++|+||+|+.... . ...........++.+||+++.|++
T Consensus 101 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 101 GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 68899999999886554443333322333233468999999999986421 1 112222345678899999999999
Q ss_pred HHHHHHHHHh
Q 009371 466 EFCSAVQEKL 475 (536)
Q Consensus 466 eL~~~I~~~l 475 (536)
+++++|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.64 E-value=4.9e-18 Score=185.86 Aligned_cols=153 Identities=22% Similarity=0.267 Sum_probs=111.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.|+|+++|++|+|||||+++|++..+......+.|.+.....+.++++..+.||||||+..... .....+..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~--------~~~~~~~~ 75 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA--------MRARGTQV 75 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT--------SBBSSSBS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH--------HHHHHHcc
Confidence 4679999999999999999999877665555666666665555555677899999999832111 11223567
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-----HHHHHhc------cCCCEEEEeccC
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-----KVKLEAQ------KREDVVCISALS 460 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-----~~~~~~~------~~~~~v~vSAkt 460 (536)
+|++++|+|++++...+..+.+..+. ..++|+++|+||+|+..... ....... ...+++++||++
T Consensus 76 aD~vILVVDa~dg~~~qt~e~l~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAkt 151 (537)
T 3izy_P 76 TDIVILVVAADDGVMKQTVESIQHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALT 151 (537)
T ss_dssp BSSCEEECBSSSCCCHHHHHHHHHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSS
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCC
Confidence 99999999999988777766554433 24789999999999875321 1111100 124789999999
Q ss_pred CCCHHHHHHHHHHHhc
Q 009371 461 GNGLDEFCSAVQEKLK 476 (536)
Q Consensus 461 g~GIdeL~~~I~~~l~ 476 (536)
|.|+++|+++|...+.
T Consensus 152 G~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 152 GENMMALAEATIALAE 167 (537)
T ss_dssp SCSSHHHHHHHHHHHT
T ss_pred CCCchhHHHHHHHhhh
Confidence 9999999999998765
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.64 E-value=1.8e-15 Score=161.99 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=95.5
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccc-------------------------------cccccccCCeeEEEEEeCC
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAE-------------------------------DRLFATLDPTTRRVQMKNG 359 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~-------------------------------~~~~~Tld~ttr~i~l~~g 359 (536)
....|+++|++|+|||||+|+|++...... ...+.|.+.....+.. ++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EK 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CC
Confidence 345899999999999999999965321110 0122344444444444 56
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcch-------HHHHHHHHHHHhhcCCCCCC-EEEEE
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLA-------EQQIEAVDKVLSELDVSSIP-KLMIW 431 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~-------~~~~~~v~~vL~~l~~~~~p-iIvVl 431 (536)
..+.+|||||+. .+...+...+..+|++++|+|++++.. .+..+.+. .+.. .++| +|+|+
T Consensus 95 ~~~~iiDTPGh~--------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~-~~~~---~~v~~iIvvi 162 (439)
T 3j2k_7 95 KHFTILDAPGHK--------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM-LAKT---AGVKHLIVLI 162 (439)
T ss_pred eEEEEEECCChH--------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHH-HHHH---cCCCeEEEEe
Confidence 789999999982 334456667789999999999998754 23333332 2333 3567 89999
Q ss_pred EcCCCCCCh---hHH-------HHHh-c------cCCCEEEEeccCCCCHHHHHH
Q 009371 432 NKVDKVCDP---QKV-------KLEA-Q------KREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 432 NKiDl~~~~---~~~-------~~~~-~------~~~~~v~vSAktg~GIdeL~~ 469 (536)
||+|+.... ... .... . ...+++++||++|.|++++.+
T Consensus 163 NK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 163 NKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999996421 111 0000 0 135799999999999999544
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=3.2e-15 Score=158.36 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=96.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc---cccccccccCCeeEEEEEe--------------C--C------eeEEEee
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATLDPTTRRVQMK--------------N--G------GEFLLTD 366 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tld~ttr~i~l~--------------~--g------~~i~LiD 366 (536)
..+|+++|+.|+|||||+++|+|.... .......|.+.......+. . + ..+.+||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 457999999999999999999975321 1112233444332222211 1 1 5789999
Q ss_pred cccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---H
Q 009371 367 TVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---K 442 (536)
Q Consensus 367 TpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~ 442 (536)
|||+. .....+...+..+|++++|+|++++. ..+..+.+. .+..++ ..|+++|+||+|+.+... .
T Consensus 88 tPGh~--------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~l~--~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 88 SPGHE--------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-ALEILG--IDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp CSSHH--------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-HHHHTT--CCCEEEEEECTTSSCTTTTTTH
T ss_pred CCCHH--------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-HHHHcC--CCeEEEEEEccCCCCHHHHHHH
Confidence 99971 22233444556789999999999765 445444443 334443 358999999999976432 1
Q ss_pred ---HHHHhc----cCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 443 ---VKLEAQ----KREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 443 ---~~~~~~----~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
...... ...+++++||++|.|+++|+++|.+.+..
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 111111 35689999999999999999999987754
No 152
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.61 E-value=4.2e-16 Score=170.64 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=94.0
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeE--------EEEEeC---CeeEEEeecccccccchhhHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTR--------RVQMKN---GGEFLLTDTVGFIQKLPTTLV 379 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr--------~i~l~~---g~~i~LiDTpG~i~~lp~~l~ 379 (536)
...+|+++|.+|||||||+|+|++..+..... .|...... .+.+.. +..+.+|||||...... .
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~--~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~--~- 114 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKES--QTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA--S- 114 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT--T-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH--H-
Confidence 34689999999999999999999876532111 12221111 222212 46899999999622111 1
Q ss_pred HHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh----HHH-HHhccCCCEE
Q 009371 380 AAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ----KVK-LEAQKREDVV 454 (536)
Q Consensus 380 e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~----~~~-~~~~~~~~~v 454 (536)
....+..+|++++|+|+++.. ....+...+...+ .+.|+|+|+||+|+..... ... .......+++
T Consensus 115 -----~~~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 185 (535)
T 3dpu_A 115 -----HQFFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFH 185 (535)
T ss_dssp -----CHHHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEE
T ss_pred -----HHHHccCCcEEEEEEeCCCch---hHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceE
Confidence 112356799999999998652 2333344444443 3689999999999976432 111 1223356799
Q ss_pred EEeccCCCCHHHHHHHHHHHhcccc
Q 009371 455 CISALSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~~~~ 479 (536)
++||++|.|+++|+++|.+.+....
T Consensus 186 ~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 186 RISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp ECCC-----CTTHHHHHHHHHTCTT
T ss_pred EEecCcccCHHHHHHHHHHHHhccc
Confidence 9999999999999999999887653
No 153
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.61 E-value=5.2e-15 Score=166.97 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=105.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCee--------EEEEEeCC-------------------------
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTT--------RRVQMKNG------------------------- 359 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~tt--------r~i~l~~g------------------------- 359 (536)
++|+|+|.+|+|||||+|+|+|..+...+...+|..++. ..+.+.++
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l 149 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence 579999999999999999999987654332222211100 01111000
Q ss_pred ------------------------eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHH
Q 009371 360 ------------------------GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDK 415 (536)
Q Consensus 360 ------------------------~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~ 415 (536)
..+.+|||||+.+... ....+...+..+|++++|+|++++.+..+...+..
T Consensus 150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~ 224 (695)
T 2j69_A 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-----RNELSLGYVNNCHAILFVMRASQPCTLGERRYLEN 224 (695)
T ss_dssp HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHH
T ss_pred hhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHH
Confidence 3689999999843211 12345566788999999999998877666655544
Q ss_pred HHhhcCCCCCCEEEEEEcCCCCCCh----h----------HHHH-----Hh---------ccCCCEEEEecc--------
Q 009371 416 VLSELDVSSIPKLMIWNKVDKVCDP----Q----------KVKL-----EA---------QKREDVVCISAL-------- 459 (536)
Q Consensus 416 vL~~l~~~~~piIvVlNKiDl~~~~----~----------~~~~-----~~---------~~~~~~v~vSAk-------- 459 (536)
.+.. .+.|+++|+||+|+.... + .... .. ....++++|||+
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 4433 367999999999986432 0 0110 11 012479999999
Q ss_pred ------CCCCHHHHHHHHHHHhccc
Q 009371 460 ------SGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 460 ------tg~GIdeL~~~I~~~l~~~ 478 (536)
+|.|+++|+++|.+.+...
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred CchhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.60 E-value=2.1e-15 Score=159.63 Aligned_cols=153 Identities=22% Similarity=0.192 Sum_probs=103.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCC--------cccc---cc------ccccccCCeeEEEEEeCCeeEEEeecccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGA--------TVLA---ED------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~--------~~~~---~~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~l 374 (536)
..+|+++|++|+|||||+++|++. .+.. .+ ....|.+.....+.. ++..+.+|||||+.+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH--
Confidence 357999999999999999999873 1100 00 122334433333332 567899999999843
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhHHH-------HH
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQKVK-------LE 446 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~~~-------~~ 446 (536)
+...+...+..+|++++|+|++++...+..+.+. .+.. .++| +++|+||+|+....+... ..
T Consensus 88 ------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~-~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 88 ------YIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp ------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 2234556678899999999999887665544433 3333 3678 889999999985432111 11
Q ss_pred -hc-----cCCCEEEEeccCCCC------------------HHHHHHHHHHHhcc
Q 009371 447 -AQ-----KREDVVCISALSGNG------------------LDEFCSAVQEKLKD 477 (536)
Q Consensus 447 -~~-----~~~~~v~vSAktg~G------------------IdeL~~~I~~~l~~ 477 (536)
.. ...+++++||++|.| +++|+++|.+.+..
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 11 136899999999987 88999999887753
No 155
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.60 E-value=4.1e-15 Score=164.88 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=98.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccccc---------------ccccccCCeeEEEEEe--CC--eeEEEeecccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAED---------------RLFATLDPTTRRVQMK--NG--GEFLLTDTVGFIQ 372 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~---------------~~~~Tld~ttr~i~l~--~g--~~i~LiDTpG~i~ 372 (536)
+..|+|+|+.|+|||||+++|+...-.... ..+.|+......+.+. ++ ..+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 357999999999999999999752111000 1122333333344443 22 4788999999943
Q ss_pred cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH--HHHHh-c-
Q 009371 373 KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK--VKLEA-Q- 448 (536)
Q Consensus 373 ~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~--~~~~~-~- 448 (536)
. ...+...+..+|++++|+|++++...+....+...+. .++|+|+|+||+|+...... ..... .
T Consensus 84 F--------~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~l 151 (599)
T 3cb4_D 84 F--------SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAADPERVAEEIEDIV 151 (599)
T ss_dssp G--------HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCCHHHHHHHHHHHT
T ss_pred H--------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcccccHHHHHHHHHHHh
Confidence 1 1223445678999999999999877666666554443 37899999999999864321 11111 1
Q ss_pred --cCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 449 --KREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 449 --~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
...+++++||++|.|+++|+++|.+.+...
T Consensus 152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred CCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 123589999999999999999999988643
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.60 E-value=3.3e-15 Score=165.49 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=101.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccc-----c----------ccccccCCeeEEEEEe--CC--eeEEEeecccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAE-----D----------RLFATLDPTTRRVQMK--NG--GEFLLTDTVGFIQ 372 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~-----~----------~~~~Tld~ttr~i~l~--~g--~~i~LiDTpG~i~ 372 (536)
++.|+|+|++|+|||||+++|+...-... + ....|+......+.+. ++ ..+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 35799999999999999999975211000 0 1122333333344442 23 4678999999943
Q ss_pred cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh-H-HHHHh-cc
Q 009371 373 KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ-K-VKLEA-QK 449 (536)
Q Consensus 373 ~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~-~~~~~-~~ 449 (536)
. ...+...+..+|++++|+|++++...+....+...+. .++|+|+|+||+|+..... . ..... ..
T Consensus 86 F--------~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~~~~v~~el~~~l 153 (600)
T 2ywe_A 86 F--------SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSADVDRVKKQIEEVL 153 (600)
T ss_dssp G--------HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCCHHHHHHHHHHTS
T ss_pred H--------HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccCHHHHHHHHHHhh
Confidence 2 1223344678999999999999887777666655443 3789999999999976432 1 11111 11
Q ss_pred C---CCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 450 R---EDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 450 ~---~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
. .+++++||++|.|+++|+++|.+.+...
T Consensus 154 g~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 154 GLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 2 2589999999999999999999988653
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.59 E-value=5e-15 Score=155.31 Aligned_cols=141 Identities=14% Similarity=0.232 Sum_probs=100.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESS 393 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aD 393 (536)
.|+++|++|+|||||+++|+ ....|.+.....+.+ ++..+.+|||||+.+ +...+...+..+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~--------f~~~~~~~~~~aD 85 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPK--------TLKSLITALNISD 85 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECS-SSSEEEEEECTTTTT--------CHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEec-CCeEEEEEECCChHH--------HHHHHHHHHHHCC
Confidence 69999999999999999998 223456655555554 567899999999843 2234555678999
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCE-EEEEE-cCCCCCChhH------HHHHhc----cCCCEEE--Eecc
Q 009371 394 LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPK-LMIWN-KVDKVCDPQK------VKLEAQ----KREDVVC--ISAL 459 (536)
Q Consensus 394 liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~pi-IvVlN-KiDl~~~~~~------~~~~~~----~~~~~v~--vSAk 459 (536)
++++|+| +.....+..+.+ ..+..+ ++|. |+|+| |+|+ +.... ...... ...++++ +||+
T Consensus 86 ~ailVvd-~~g~~~qt~e~~-~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 86 IAVLCIP-PQGLDAHTGECI-IALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp EEEEEEC-TTCCCHHHHHHH-HHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred EEEEEEc-CCCCcHHHHHHH-HHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 9999999 766555444433 233333 5687 99999 9999 43211 111111 2358999 9999
Q ss_pred C---CCCHHHHHHHHHHHhcc
Q 009371 460 S---GNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 460 t---g~GIdeL~~~I~~~l~~ 477 (536)
+ |.|+++|++.|.+.+..
T Consensus 160 ~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 160 AKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp SSSTTTTHHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHhhccc
Confidence 9 99999999999887653
No 158
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=148.25 Aligned_cols=86 Identities=19% Similarity=0.098 Sum_probs=58.8
Q ss_pred hccceEEEEeCCCc--chHHHHHHHHHHH-hhcCCCCCCEEEEEEcCCCCCChhH--HHHHh-c-cCCCEEEEeccCCCC
Q 009371 391 ESSLLVHVVDISHP--LAEQQIEAVDKVL-SELDVSSIPKLMIWNKVDKVCDPQK--VKLEA-Q-KREDVVCISALSGNG 463 (536)
Q Consensus 391 ~aDliLlVvD~s~~--~~~~~~~~v~~vL-~~l~~~~~piIvVlNKiDl~~~~~~--~~~~~-~-~~~~~v~vSAktg~G 463 (536)
.+|++++|+|++++ .+.+....+...+ ......+.|+++|+||+|+...... ..... . ...+++++||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 58999999999986 5544443333222 2212347899999999998653221 11111 1 356899999999999
Q ss_pred HHHHHHHHHHHhc
Q 009371 464 LDEFCSAVQEKLK 476 (536)
Q Consensus 464 IdeL~~~I~~~l~ 476 (536)
+++++++|.+.+.
T Consensus 242 v~elf~~l~~~l~ 254 (255)
T 3c5h_A 242 VDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988763
No 159
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.58 E-value=4.5e-15 Score=167.84 Aligned_cols=162 Identities=22% Similarity=0.262 Sum_probs=108.6
Q ss_pred CCCCCEEEEEccCCCChHHHHHhhhCCcccccccccccc-----------------------------------------
Q 009371 309 SVPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL----------------------------------------- 347 (536)
Q Consensus 309 ~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl----------------------------------------- 347 (536)
..+.|.|+|+|++|+|||||+|+|+|..+...+....|.
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 356799999999999999999999998763222111111
Q ss_pred ----------CCeeEEEEEeCCeeEEEeecccccccc----hhhHHHHHHHhHHHH--HhccceEEEEeCCCcchHHHHH
Q 009371 348 ----------DPTTRRVQMKNGGEFLLTDTVGFIQKL----PTTLVAAFRATLEEI--SESSLLVHVVDISHPLAEQQIE 411 (536)
Q Consensus 348 ----------d~ttr~i~l~~g~~i~LiDTpG~i~~l----p~~l~e~f~~tl~ei--~~aDliLlVvD~s~~~~~~~~~ 411 (536)
++....+..++...+.|+||||+.... |......+......+ ..+|++++|+|++.+....+.
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~- 206 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA- 206 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-
Confidence 112223334556678999999997622 333334444433333 468999999999987654443
Q ss_pred HHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHH-hc-------cCCCEEEEeccCCCCHHHHHHHHHH
Q 009371 412 AVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLE-AQ-------KREDVVCISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 412 ~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~-~~-------~~~~~v~vSAktg~GIdeL~~~I~~ 473 (536)
..++..+...+.|+|+|+||+|+.+........ .. ...+++++||++|.|+++|+++|.+
T Consensus 207 --l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 207 --LKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp --HHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred --HHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 123444555578999999999998653321111 11 1236788999999999999999987
No 160
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.58 E-value=9.6e-17 Score=174.32 Aligned_cols=150 Identities=25% Similarity=0.347 Sum_probs=102.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHh
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISE 391 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~ 391 (536)
.|+|+++|++|+|||||+++|.+..+......+.|.+.....+.+ ++..+.||||||+.+... .....+..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~--------~~~~~~~~ 74 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTS--------MRARGAQA 74 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTT--------SBCSSSBS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHH--------HHHHHHhh
Confidence 467999999999999999999876554333344444443333433 567899999999843211 11223567
Q ss_pred ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh-hHHHHHh----------ccCCCEEEEeccC
Q 009371 392 SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-QKVKLEA----------QKREDVVCISALS 460 (536)
Q Consensus 392 aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-~~~~~~~----------~~~~~~v~vSAkt 460 (536)
+|++++|+|++++...+..+.+..+ .. .++|+|+|+||+|+.... +...... ....+++++||++
T Consensus 75 aD~aILVVda~~g~~~qT~e~l~~~-~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 75 TDIVVLVVAADDGVMPQTIEAIQHA-KA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp CSSEEEEEETTTBSCTTTHHHHHHH-HH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred CCEEEEEeecccCccHHHHHHHHHH-Hh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence 9999999999987655555544332 22 368999999999997531 1110000 0125899999999
Q ss_pred CCCHHHHHHHHHHH
Q 009371 461 GNGLDEFCSAVQEK 474 (536)
Q Consensus 461 g~GIdeL~~~I~~~ 474 (536)
|.|+++|+++|...
T Consensus 151 G~gI~eLle~I~~~ 164 (501)
T 1zo1_I 151 GTGIDELLDAILLQ 164 (501)
T ss_dssp CTTCTTHHHHTTTT
T ss_pred ccCcchhhhhhhhh
Confidence 99999999998653
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.57 E-value=7.6e-15 Score=155.04 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=101.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc----------c------ccccccCCeeEEEEEeCCeeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE----------D------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~----------~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~ 376 (536)
.+|+++|++|+|||||+++|++...... + ....|++.....+. .++..+.+|||||+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~----- 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHA----- 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChH-----
Confidence 4699999999999999999986311000 0 11122222222222 246789999999982
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhHH-------HHHh-
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQKV-------KLEA- 447 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~~-------~~~~- 447 (536)
.+...+...+..+|++++|+|++++...+..+.+. .+.. .++| +++|+||+|+....+.. ....
T Consensus 78 ---~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 78 ---DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLL-LARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp ---HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHH-HHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 22334555677899999999999987666655553 3333 3678 68999999998533211 1111
Q ss_pred c-c----CCCEEEEeccCCCC----------HHHHHHHHHHHhcc
Q 009371 448 Q-K----REDVVCISALSGNG----------LDEFCSAVQEKLKD 477 (536)
Q Consensus 448 ~-~----~~~~v~vSAktg~G----------IdeL~~~I~~~l~~ 477 (536)
. . ..+++++||++|.| +++|+++|.+.+..
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 1 1 35899999999764 89999999987764
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.57 E-value=4.2e-15 Score=160.88 Aligned_cols=143 Identities=24% Similarity=0.226 Sum_probs=92.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccc-------------------------------ccccccccCCeeEEEEEeCCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLA-------------------------------EDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~-------------------------------~~~~~~Tld~ttr~i~l~~g~ 360 (536)
..+|+++|++|+|||||+|+|++..... ....+.|.+.....+.. .+.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 111 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA 111 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCc
Confidence 3579999999999999999997541110 11123455555555554 567
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcch-------HHHHHHHHHHHhhcCCCCCCEEEEEEc
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLA-------EQQIEAVDKVLSELDVSSIPKLMIWNK 433 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~-------~~~~~~v~~vL~~l~~~~~piIvVlNK 433 (536)
.+.||||||+.+ ....+...+..+|++++|+|++++.. .+..+ ....+..++ ..|+|+|+||
T Consensus 112 ~~~iiDTPG~~~--------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~~~~--~~~iIvviNK 180 (483)
T 3p26_A 112 NFTIVDAPGHRD--------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASSLG--IHNLIIAMNK 180 (483)
T ss_dssp EEEEECCCCCGG--------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHHHTT--CCCEEEEEEC
T ss_pred eEEEEECCCcHH--------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHHHcC--CCcEEEEEEC
Confidence 899999999932 23445667789999999999998632 22222 223344433 2469999999
Q ss_pred CCCCCChh-HHH----H---Hh---c---cCCCEEEEeccCCCCHHH
Q 009371 434 VDKVCDPQ-KVK----L---EA---Q---KREDVVCISALSGNGLDE 466 (536)
Q Consensus 434 iDl~~~~~-~~~----~---~~---~---~~~~~v~vSAktg~GIde 466 (536)
+|+.+... ... . .. . ...+++++||++|.|+++
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99986321 111 0 00 0 135789999999999974
No 163
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.57 E-value=3.5e-15 Score=155.07 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=100.4
Q ss_pred CCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCe-----------------------e---------------
Q 009371 310 VPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPT-----------------------T--------------- 351 (536)
Q Consensus 310 ~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~t-----------------------t--------------- 351 (536)
...|.|+|+|.+|||||||+|+|+|..+........|..++ +
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999998763211111111111 0
Q ss_pred -------------EEEEEeCCeeEEEeecccccccc----hhhHHHHHHHhH-HHHHh-ccceEEEEeCCCcchHHHHHH
Q 009371 352 -------------RRVQMKNGGEFLLTDTVGFIQKL----PTTLVAAFRATL-EEISE-SSLLVHVVDISHPLAEQQIEA 412 (536)
Q Consensus 352 -------------r~i~l~~g~~i~LiDTpG~i~~l----p~~l~e~f~~tl-~ei~~-aDliLlVvD~s~~~~~~~~~~ 412 (536)
-.+..+++..+.||||||+.... +....+.+.... .++.. .+++++|+|++......+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-- 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-- 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--
Confidence 01111235679999999986521 333333444433 33333 4567777887765443332
Q ss_pred HHHHHhhcCCCCCCEEEEEEcCCCCCChh-HHHHHhc-------cCCCEEEEeccCCCCHHHHHHHHHH
Q 009371 413 VDKVLSELDVSSIPKLMIWNKVDKVCDPQ-KVKLEAQ-------KREDVVCISALSGNGLDEFCSAVQE 473 (536)
Q Consensus 413 v~~vL~~l~~~~~piIvVlNKiDl~~~~~-~~~~~~~-------~~~~~v~vSAktg~GIdeL~~~I~~ 473 (536)
..+++.+...+.|+++|+||+|+.+... ....... ...+++++||++|.|++++++++.+
T Consensus 187 -~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 -LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred -HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2344555556789999999999986432 1111111 1135678999999999999999876
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=2.2e-14 Score=135.97 Aligned_cols=158 Identities=24% Similarity=0.286 Sum_probs=95.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc--ccccccccCCeeEEEEEeCCeeEEEeeccccccc-chhhHHHHHHHhH---
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA--EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK-LPTTLVAAFRATL--- 386 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~--~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~-lp~~l~e~f~~tl--- 386 (536)
.+|+++|++|||||||+|+|+|..+.. ....+.+.. ...+.+ ++ .+.++||||+... .+....+.+...+
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEE-ET-TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEe-cC-CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 479999999999999999999875211 111111111 122333 23 6789999998431 1111112233222
Q ss_pred -HHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH------HHHh-cc--CCCEEEE
Q 009371 387 -EEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV------KLEA-QK--REDVVCI 456 (536)
Q Consensus 387 -~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~------~~~~-~~--~~~~v~v 456 (536)
.....+|.+++|+|++.+....+. .+..++.. .+.|+++|.||+|+....+.. .... .. ...++++
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 223468999999999887654332 23334443 367999999999988643211 1111 11 2467899
Q ss_pred eccCCCCHHHHHHHHHHHhccc
Q 009371 457 SALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 457 SAktg~GIdeL~~~I~~~l~~~ 478 (536)
||+++.|+++++++|.+.+...
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC--
T ss_pred eecCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999887653
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.9e-15 Score=166.69 Aligned_cols=146 Identities=24% Similarity=0.249 Sum_probs=97.6
Q ss_pred CCCCEEEEEccCCCChHHHHHhhhCCcccccc-------------------------------ccccccCCeeEEEEEeC
Q 009371 310 VPVPVVSLVGYTNAGKSTLLNRLTGATVLAED-------------------------------RLFATLDPTTRRVQMKN 358 (536)
Q Consensus 310 ~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~-------------------------------~~~~Tld~ttr~i~l~~ 358 (536)
....+|+++|++|+|||||+|+|++....+.. ..+.|.+.....+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 34568999999999999999999876332211 134566666666665 6
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-------hHHHHHHHHHHHhhcCCCCCCEEEEE
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-------AEQQIEAVDKVLSELDVSSIPKLMIW 431 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-------~~~~~~~v~~vL~~l~~~~~piIvVl 431 (536)
+..+.||||||+.+ ....+...+..+|++|+|+|++++. ..+..+. ...+..++ ..|+|+|+
T Consensus 244 ~~~~~iiDTPG~e~--------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~-l~~~~~lg--i~~iIVVv 312 (611)
T 3izq_1 244 RANFTIVDAPGHRD--------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEH-MLLASSLG--IHNLIIAM 312 (611)
T ss_dssp SCEEEEEECCSSSC--------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHH-HHHHHTTT--CCEEEEEE
T ss_pred CceEEEEECCCCcc--------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHH-HHHHHHcC--CCeEEEEE
Confidence 77899999999832 2334555678899999999998742 1222222 22333332 23599999
Q ss_pred EcCCCCCChh-HHH-------HHh---c---cCCCEEEEeccCCCCHHHH
Q 009371 432 NKVDKVCDPQ-KVK-------LEA---Q---KREDVVCISALSGNGLDEF 467 (536)
Q Consensus 432 NKiDl~~~~~-~~~-------~~~---~---~~~~~v~vSAktg~GIdeL 467 (536)
||+|+..... ... ... . ...+++++||++|.|++++
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999986321 110 000 0 1358999999999999865
No 166
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=1.7e-15 Score=160.25 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=49.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe--------------------C---CeeEEEeecccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK--------------------N---GGEFLLTDTVGF 370 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~--------------------~---g~~i~LiDTpG~ 370 (536)
+|+|+|.+|||||||+|+|++....+.+++++|.+++.+.+.+. + +.++.+|||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 58999999999999999999988666788889988877754321 2 247889999998
Q ss_pred cccchhhHHHHHHHhHHHHHhccceEEEEeCCCc
Q 009371 371 IQKLPTTLVAAFRATLEEISESSLLVHVVDISHP 404 (536)
Q Consensus 371 i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~ 404 (536)
.+..... .......+..+..+|++++|+|+++.
T Consensus 82 ~~~a~~~-~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAHEG-RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccchhhh-hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 5421110 00112233456889999999999875
No 167
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.55 E-value=1.6e-14 Score=150.21 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=100.8
Q ss_pred CCCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCe---------------------------------------
Q 009371 310 VPVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPT--------------------------------------- 350 (536)
Q Consensus 310 ~~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~t--------------------------------------- 350 (536)
..+|.|+|+|.+|||||||+|+|+|..+...+....|..++
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 46789999999999999999999997653222222221111
Q ss_pred ---------------eEEEEEeCCeeEEEeecccccccc----hhhHHHHHH-HhHHHHHhccceEEEEeCCCcchHHHH
Q 009371 351 ---------------TRRVQMKNGGEFLLTDTVGFIQKL----PTTLVAAFR-ATLEEISESSLLVHVVDISHPLAEQQI 410 (536)
Q Consensus 351 ---------------tr~i~l~~g~~i~LiDTpG~i~~l----p~~l~e~f~-~tl~ei~~aDliLlVvD~s~~~~~~~~ 410 (536)
.-.+..+++..+.+|||||+.+.. +......+. .+..++..+|++++|+|.+......
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 111112234578999999997531 222222232 3556678999999999876533211
Q ss_pred HHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHH-Hh----ccCCCEEEEeccCCCCHHHHHHH
Q 009371 411 EAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKL-EA----QKREDVVCISALSGNGLDEFCSA 470 (536)
Q Consensus 411 ~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~-~~----~~~~~~v~vSAktg~GIdeL~~~ 470 (536)
..+..++..+...+.|+|+|+||+|+.+....... .. ....+++++|++++.|+++.+..
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 12234556666667899999999999865322111 11 23467899999998888765443
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.55 E-value=3e-15 Score=165.94 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=98.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEe-----------------CCeeEEEeecccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMK-----------------NGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~-----------------~g~~i~LiDTpG~i~~l 374 (536)
.|+|+++|++|+|||||+++|++..+........|.......+.+. ....+.||||||+.+..
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4689999999999999999998754321111011111111111110 11258999999984321
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh--------------
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP-------------- 440 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~-------------- 440 (536)
.. ....+..+|++++|+|++++...+..+.+.. +.. .++|+++|+||+|+....
T Consensus 85 ~~--------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~-l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~ 152 (594)
T 1g7s_A 85 TL--------RKRGGALADLAILIVDINEGFKPQTQEALNI-LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (594)
T ss_dssp TS--------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred HH--------HHHHHhhCCEEEEEEECCCCccHhHHHHHHH-HHH---cCCeEEEEecccccccccccccCCchHHHHHH
Confidence 11 1123467999999999999776666665543 333 478999999999996421
Q ss_pred --hH----H--------HHHh---------------ccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 441 --QK----V--------KLEA---------------QKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 441 --~~----~--------~~~~---------------~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
.. + .... ....+++++||++|.|+++|+++|...+.
T Consensus 153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00 0 0000 01237999999999999999999988765
No 169
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.54 E-value=1e-14 Score=151.04 Aligned_cols=182 Identities=18% Similarity=0.181 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccCCCCCCEEEEEccCCCChHHHHHhhhCC------cccc-ccccccc
Q 009371 276 EVDKRILRTQIGVLKKELESVRKHRKQYR-N-RRVSVPVPVVSLVGYTNAGKSTLLNRLTGA------TVLA-EDRLFAT 346 (536)
Q Consensus 276 e~drr~i~~ri~~Lk~eL~~l~~~r~~~r-~-~r~~~~~~~VaIVG~tnAGKSTLlNaL~g~------~~~~-~~~~~~T 346 (536)
+.||+.+.+.|..+..+.......+.... . .........|+++|++|+|||||+|.|++. .+.+ ...+.++
T Consensus 18 ~~~r~~l~~~i~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 18 QGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (341)
T ss_dssp TTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred cCCHHHHHhhhhHhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence 45688888888776654433222111111 1 112234568999999999999999999742 2211 1111111
Q ss_pred cC-----------------Cee--EEEE-----------------E--eCCeeEEEeecccccccchhhHHHHHHHhHHH
Q 009371 347 LD-----------------PTT--RRVQ-----------------M--KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEE 388 (536)
Q Consensus 347 ld-----------------~tt--r~i~-----------------l--~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~e 388 (536)
.. +.. .... . .++.+++++||||+.+. .. ..
T Consensus 98 ~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~--~~---------~~ 166 (341)
T 2p67_A 98 VTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS--ET---------EV 166 (341)
T ss_dssp -------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH--HH---------HH
T ss_pred CCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccch--HH---------HH
Confidence 00 000 0000 0 24678999999998531 11 11
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH---HHHh------c-----cCCCEE
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV---KLEA------Q-----KREDVV 454 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~---~~~~------~-----~~~~~v 454 (536)
...+|++++|+|++.+... ..+.. . ..+.|.++|+||+|+....... .... . +..+++
T Consensus 167 ~~~aD~vl~Vvd~~~~~~~---~~l~~--~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 238 (341)
T 2p67_A 167 ARMVDCFISLQIAGGGDDL---QGIKK--G---LMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL 238 (341)
T ss_dssp HTTCSEEEEEECC---------CCCCH--H---HHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred HHhCCEEEEEEeCCccHHH---HHHHH--h---hhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEE
Confidence 3789999999998764321 11100 0 0145889999999997642211 0110 1 145789
Q ss_pred EEeccCCCCHHHHHHHHHHHhc
Q 009371 455 CISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~ 476 (536)
++||++|.|+++|+++|.+.+.
T Consensus 239 ~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 239 TCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECBGGGTBSHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.54 E-value=2.1e-14 Score=153.31 Aligned_cols=143 Identities=24% Similarity=0.198 Sum_probs=91.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccc-cc----------c----------------------cccccCCeeEEEEEeC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLA-ED----------R----------------------LFATLDPTTRRVQMKN 358 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~-~~----------~----------------------~~~Tld~ttr~i~l~~ 358 (536)
..+|+++|++|+|||||+|+|++..... .+ . ...|++.....+.. +
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-~ 102 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-A 102 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-S
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-C
Confidence 4579999999999999999997543110 00 0 01122222222332 5
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
+..+.+|||||+.+. ...+...+..+|++++|+|++++...+..+.+. .+..++ ..|+|+|+||+|+.+
T Consensus 103 ~~~~~iiDtpGh~~f--------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~-~~~~~~--~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 103 KRKFIIADTPGHEQY--------TRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IASLLG--IKHIVVAINKMDLNG 171 (434)
T ss_dssp SEEEEEEECCCSGGG--------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHHTT--CCEEEEEEECTTTTT
T ss_pred CceEEEEECCChHHH--------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHHcC--CCeEEEEEEcCcCCc
Confidence 678999999998321 223445678999999999999887655544433 334432 235899999999986
Q ss_pred Ch-hHH-------HH-HhccC-----CCEEEEeccCCCCHHH
Q 009371 439 DP-QKV-------KL-EAQKR-----EDVVCISALSGNGLDE 466 (536)
Q Consensus 439 ~~-~~~-------~~-~~~~~-----~~~v~vSAktg~GIde 466 (536)
.. +.. .. ..... .+++++||++|.|+++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 32 211 11 11122 5789999999999987
No 171
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.53 E-value=4.7e-15 Score=154.37 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=68.7
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+..++|+||||+... ....+..+|++++|+|.+....... ++ .+...+|.++|+||+|+.
T Consensus 170 ~~~~~iiiDTpGi~~~-----------~~~~~~~aD~vl~V~d~~~~~~~~~-------l~-~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-----------EVAVANMVDTFVLLTLARTGDQLQG-------IK-KGVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSSH-----------HHHHHTTCSEEEEEEESSTTCTTTT-------CC-TTSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCcH-----------HHHHHHhCCEEEEEECCCCCccHHH-------HH-HhHhhcCCEEEEECCCCc
Confidence 4578999999997331 1112378999999999876532211 11 112346999999999987
Q ss_pred CChhH------HHHHh--------ccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 438 CDPQK------VKLEA--------QKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 438 ~~~~~------~~~~~--------~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
..... +.... ....+++++||++|.|+++|+++|.+.+..
T Consensus 231 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 231 HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 53221 11110 114689999999999999999999988764
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.49 E-value=2.1e-14 Score=154.50 Aligned_cols=143 Identities=18% Similarity=0.116 Sum_probs=93.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCc--ccc-----------------------cc------ccccccCCeeEEEEEeCCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGAT--VLA-----------------------ED------RLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~--~~~-----------------------~~------~~~~Tld~ttr~i~l~~g~ 360 (536)
..+|+++|++|+|||||+|+|++.. +.. .+ ....|.+.....+.. ++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCc
Confidence 3579999999999999999998531 100 01 123455555555554 567
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchH-------HHHHHHHHHHhhcCCCCCC-EEEEEE
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAE-------QQIEAVDKVLSELDVSSIP-KLMIWN 432 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~-------~~~~~v~~vL~~l~~~~~p-iIvVlN 432 (536)
.+.+|||||+.+ ....+...+..+|++++|+|++++... +..+.+. .+..+ ++| +|+|+|
T Consensus 86 ~~~iiDtPGh~~--------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~~~---~v~~iivviN 153 (458)
T 1f60_A 86 QVTVIDAPGHRD--------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTL---GVRQLIVAVN 153 (458)
T ss_dssp EEEEEECCCCTT--------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHT---TCCEEEEEEE
T ss_pred eEEEEECCCcHH--------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHHHc---CCCeEEEEEE
Confidence 899999999832 223355567889999999999876433 3333322 23332 455 899999
Q ss_pred cCCCCCC-hhHH-------HHH-hc-c----CCCEEEEeccCCCCHHHH
Q 009371 433 KVDKVCD-PQKV-------KLE-AQ-K----REDVVCISALSGNGLDEF 467 (536)
Q Consensus 433 KiDl~~~-~~~~-------~~~-~~-~----~~~~v~vSAktg~GIdeL 467 (536)
|+|+... .+.. ... .. . ..+++++||++|.|++++
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9999842 2211 111 11 1 268999999999998743
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=2.3e-14 Score=136.79 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=79.7
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
..++|+++|++|+|||||+|+|++..+.. ...+..++... .+ .+..+.+|||||+.... ......+ .....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~---~~~~~~~~~~~-~~-~~~~~~l~Dt~G~~~~~-~~~~~~~---~~~~~ 81 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-DY-DGSGVTLVDFPGHVKLR-YKLSDYL---KTRAK 81 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC---BCCCSSCEEET-TG-GGSSCEEEECCCCGGGT-HHHHHHH---HHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---eeeecCceEEE-Ee-eCceEEEEECCCcHHHH-HHHHHHH---Hhccc
Confidence 45789999999999999999999865432 11112222211 11 45678999999983321 1111111 11123
Q ss_pred hccceEEEEeCC-Ccch-HHHHHHHHHHHhhc---CCCCCCEEEEEEcCCCCCChhHH------H----H-HhccCCCEE
Q 009371 391 ESSLLVHVVDIS-HPLA-EQQIEAVDKVLSEL---DVSSIPKLMIWNKVDKVCDPQKV------K----L-EAQKREDVV 454 (536)
Q Consensus 391 ~aDliLlVvD~s-~~~~-~~~~~~v~~vL~~l---~~~~~piIvVlNKiDl~~~~~~~------~----~-~~~~~~~~v 454 (536)
.+|++++|+|++ ++.. ......+..++... ...+.|+++|+||+|+....... . . ......+++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLN 161 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 489999999998 4432 22223344444332 23578999999999998653211 1 1 111234688
Q ss_pred EEeccCCCC
Q 009371 455 CISALSGNG 463 (536)
Q Consensus 455 ~vSAktg~G 463 (536)
++||++|.+
T Consensus 162 ~~Sa~~~~~ 170 (218)
T 1nrj_B 162 EVERKINEE 170 (218)
T ss_dssp C--------
T ss_pred ccccccccc
Confidence 999998865
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.49 E-value=2e-15 Score=167.40 Aligned_cols=152 Identities=24% Similarity=0.213 Sum_probs=81.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcccc-------------------------------ccccccccCCeeEEEEEeCCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVLA-------------------------------EDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~~-------------------------------~~~~~~Tld~ttr~i~l~~g~ 360 (536)
..+|+++|++|+|||||+|+|++....+ ....+.|.+.....+.+ ++.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~~ 255 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DKK 255 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CCe
Confidence 4579999999999999999996421110 00123344444444444 567
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-------hHHHHHHHHHHHhhcCCCCCC-EEEEEE
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-------AEQQIEAVDKVLSELDVSSIP-KLMIWN 432 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-------~~~~~~~v~~vL~~l~~~~~p-iIvVlN 432 (536)
.+.||||||+.+.. ..+...+..+|++|+|+|++++. ..+..+.+ ..+..+ ++| +|+|+|
T Consensus 256 ~i~iiDTPGh~~f~--------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~l---gip~iIvviN 323 (592)
T 3mca_A 256 IYEIGDAPGHRDFI--------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRAL---GISEIVVSVN 323 (592)
T ss_dssp ---CCEEESSSEEE--------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHHS---SCCCEEEEEE
T ss_pred EEEEEECCChHHHH--------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHHc---CCCeEEEEEe
Confidence 89999999985322 12233457799999999998642 23333332 233333 455 899999
Q ss_pred cCCCCCC-hhHH-------HHHh--cc-----CCCEEEEeccCCCCHH--------------HHHHHHHHHhc
Q 009371 433 KVDKVCD-PQKV-------KLEA--QK-----REDVVCISALSGNGLD--------------EFCSAVQEKLK 476 (536)
Q Consensus 433 KiDl~~~-~~~~-------~~~~--~~-----~~~~v~vSAktg~GId--------------eL~~~I~~~l~ 476 (536)
|+|+... .... .... .. ..+++++||++|.|++ .|++.|...+.
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 9999762 2111 1111 11 2369999999999998 78888876554
No 175
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.48 E-value=3.3e-13 Score=141.03 Aligned_cols=89 Identities=30% Similarity=0.396 Sum_probs=65.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC----------------eeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG----------------GEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g----------------~~i~LiDTpG~i~~lp~ 376 (536)
.+|+|+|.||||||||+|+|++..+.+.+++++|.+++.+.+.+++. ..+.+|||||+.+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 36999999999999999999998877788899999998888777432 46899999999653221
Q ss_pred hHHHHH-HHhHHHHHhccceEEEEeCCC
Q 009371 377 TLVAAF-RATLEEISESSLLVHVVDISH 403 (536)
Q Consensus 377 ~l~e~f-~~tl~ei~~aDliLlVvD~s~ 403 (536)
.... ...+..+..+|++++|+|+++
T Consensus 83 --~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 --GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp --HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred --cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 0111 224566789999999999986
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.48 E-value=1.4e-13 Score=160.23 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=100.5
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccc----------c------ccccccccCCeeEEEEEeCCeeEEEeecccccccc
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVL----------A------EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~----------~------~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~l 374 (536)
...+|+++|++|+|||||+++|++.... . +...+.|.+.....+.. ++..+.+|||||+.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHe--- 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHA--- 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHH---
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChH---
Confidence 3457999999999999999999863110 0 00112233322222222 56789999999982
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCCCCCChhHH-------HHH
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVDKVCDPQKV-------KLE 446 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiDl~~~~~~~-------~~~ 446 (536)
.....+...+..+|++|+|+|++++...+..+.+. .+... ++| +|+|+||+|+....+.. ...
T Consensus 371 -----dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~-ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 371 -----DYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp -----HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHH-HHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHH-HHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 22334556678899999999999876555544443 33333 578 78999999998643221 111
Q ss_pred h-c-----cCCCEEEEeccCC--------CCHHHHHHHHHHHhc
Q 009371 447 A-Q-----KREDVVCISALSG--------NGLDEFCSAVQEKLK 476 (536)
Q Consensus 447 ~-~-----~~~~~v~vSAktg--------~GIdeL~~~I~~~l~ 476 (536)
. . ...+++++||++| .|+++|+++|.+.+.
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 1 1 1368999999999 579999999988765
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.47 E-value=1.8e-13 Score=154.41 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc------c------cc------ccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL------A------ED------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~------~------~~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
..+|+|+|++|||||||+++|+..... + .+ ....|+......+.+ ++..+++|||||+.+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df 90 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVDF 90 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccch
Confidence 457999999999999999999831100 0 00 122334433444444 6789999999998431
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
...+...+..+|++++|+|++++...+....+..+.. .++|+++|+||+|+...
T Consensus 91 --------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 91 --------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp --------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred --------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH----cCCCEEEEEECCCcccC
Confidence 1233455678999999999999877766655544332 37899999999998754
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.47 E-value=2.2e-13 Score=149.11 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=74.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc----------------cc------ccccccCCeeEEEEEeCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA----------------ED------RLFATLDPTTRRVQMKNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~----------------~~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~ 370 (536)
.+|+|+|++|||||||+++|++..... .+ ....|.......+.+ ++..+.+|||||+
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTPG~ 92 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCCCS
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECCCC
Confidence 469999999999999999998532111 00 111122222233333 6789999999998
Q ss_pred cccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 371 IQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 371 i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
.+.. ..+...+..+|++++|+|++++........ +..+...++|+++|+||+|+...
T Consensus 93 ~df~--------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~----~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 EDFS--------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKL----MEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TTCC--------HHHHHGGGGCSEEEEEEETTTCSCHHHHHH----HHHHTTTTCCEEEEEECTTSCCS
T ss_pred hhHH--------HHHHHHHHHCCEEEEEEeCCccchHHHHHH----HHHHHHcCCCEEEEEcCcCCccc
Confidence 4321 223445688999999999998765544333 23333357899999999999753
No 179
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.47 E-value=4.7e-14 Score=150.73 Aligned_cols=144 Identities=20% Similarity=0.149 Sum_probs=87.2
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCc--ccc-----------------------cc------ccccccCCeeEEEEEeCCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGAT--VLA-----------------------ED------RLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~--~~~-----------------------~~------~~~~Tld~ttr~i~l~~g~ 360 (536)
..+|+++|++|+|||||+++|++.. +.. .+ ....|++.....+.. .+.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~~ 84 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY 84 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CCe
Confidence 3579999999999999999998531 100 00 122344443334443 567
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchH-------HHHHHHHHHHhhcCCCCCCEEEEEEc
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAE-------QQIEAVDKVLSELDVSSIPKLMIWNK 433 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~-------~~~~~v~~vL~~l~~~~~piIvVlNK 433 (536)
.+.+|||||+.+ ....+...+..+|++++|+|+++...+ +..+ ....+..++ -.|+|+|+||
T Consensus 85 ~~~iiDtpG~~~--------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~-~~~~~~~~~--~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHRD--------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE-HIILAKTMG--LDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSSTT--------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH-HHHHHHHTT--CTTCEEEEEC
T ss_pred EEEEEECCCcHH--------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHH-HHHHHHHcC--CCeEEEEEEc
Confidence 899999999833 223345567889999999999985221 2222 222333332 2368999999
Q ss_pred CCCCCC---hhH-------HHHHh-c-c----CCCEEEEeccCCCCHHHH
Q 009371 434 VDKVCD---PQK-------VKLEA-Q-K----REDVVCISALSGNGLDEF 467 (536)
Q Consensus 434 iDl~~~---~~~-------~~~~~-~-~----~~~~v~vSAktg~GIdeL 467 (536)
+|+... .+. ..... . . ..+++++||++|.|+.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 999862 111 11111 1 1 257999999999999743
No 180
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.46 E-value=4.7e-14 Score=152.20 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=83.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCc--cc-----------------------ccc------ccccccCCeeEEEEEeCCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGAT--VL-----------------------AED------RLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~--~~-----------------------~~~------~~~~Tld~ttr~i~l~~g~ 360 (536)
..+|+++|++|+|||||+++|++.. +. ..+ ....|++.....+.+ ++.
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~ 121 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHR 121 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCe
Confidence 3579999999999999999996421 00 000 112333333334444 678
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcch-------HHHHHHHHHHHhhcCCCCCC-EEEEEE
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLA-------EQQIEAVDKVLSELDVSSIP-KLMIWN 432 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~-------~~~~~~v~~vL~~l~~~~~p-iIvVlN 432 (536)
.+.+|||||+.+ +...+...+..+|++|+|+|++++.. .+..+.+. .+.. .++| +|+|+|
T Consensus 122 ~~~iiDtPGh~~--------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~---~~vp~iivviN 189 (467)
T 1r5b_A 122 RFSLLDAPGHKG--------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LART---QGINHLVVVIN 189 (467)
T ss_dssp EEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHH---TTCSSEEEEEE
T ss_pred EEEEEECCCcHH--------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHH---cCCCEEEEEEE
Confidence 899999999832 22334556788999999999998742 12222222 2222 3567 999999
Q ss_pred cCCCCCC---hhH-------HHH-Hhcc-------CCCEEEEeccCCCCHHHHH
Q 009371 433 KVDKVCD---PQK-------VKL-EAQK-------REDVVCISALSGNGLDEFC 468 (536)
Q Consensus 433 KiDl~~~---~~~-------~~~-~~~~-------~~~~v~vSAktg~GIdeL~ 468 (536)
|+|+... .+. ... .... ..+++++||++|.|+++++
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999641 111 111 1111 3569999999999998754
No 181
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.46 E-value=7.3e-14 Score=143.94 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=99.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccc-ccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLA-EDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISES 392 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~a 392 (536)
+|+++|..|||||||++.+.+..... .....+|.......+ ....++.+|||+|+.+.....+ .+...++.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l-----~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY-----DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH-----HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh-----hhhhhccCC
Confidence 38999999999999999987653221 111233444333333 2346789999999844211000 122346889
Q ss_pred cceEEEEeCCCcchHHHHHHHHHHHhhc--CCCCCCEEEEEEcCCCCCChhH------HHH-----Hhc-----cCCCEE
Q 009371 393 SLLVHVVDISHPLAEQQIEAVDKVLSEL--DVSSIPKLMIWNKVDKVCDPQK------VKL-----EAQ-----KREDVV 454 (536)
Q Consensus 393 DliLlVvD~s~~~~~~~~~~v~~vL~~l--~~~~~piIvVlNKiDl~~~~~~------~~~-----~~~-----~~~~~v 454 (536)
+++++|+|+++. .......+..++..+ ...+.|+++|+||+|+.....+ ... ... ...+++
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~ 152 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY 152 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence 999999999987 444455555555433 1357899999999999875421 111 111 235789
Q ss_pred EEeccCCCCHHHHHHHHHHHh
Q 009371 455 CISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l 475 (536)
++||++ .++.+.+..|.+.+
T Consensus 153 eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 153 LTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp CCCSSS-SHHHHHHHHHHTTS
T ss_pred EeccCC-CcHHHHHHHHHHHH
Confidence 999998 58999998887654
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=144.18 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=75.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccc-------cccCCeeEEEEE-eCCe--eEEEeeccccccc---------
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLF-------ATLDPTTRRVQM-KNGG--EFLLTDTVGFIQK--------- 373 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~-------~Tld~ttr~i~l-~~g~--~i~LiDTpG~i~~--------- 373 (536)
+.|+|+|++|+|||||+|+|++......+... .|.......+.+ .++. .+.+|||||+.+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~ 117 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 117 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH
Confidence 46899999999999999999876544332211 111111111111 1333 6789999999432
Q ss_pred chhhHHHHHHHhHHHHHh----------ccceEEEEeC-CCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH
Q 009371 374 LPTTLVAAFRATLEEISE----------SSLLVHVVDI-SHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK 442 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~----------aDliLlVvD~-s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~ 442 (536)
+...+...|...+..... +|+++++++. .+.....+.. +++.+. .++|+|+|+||+|+....+.
T Consensus 118 i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~----~~~~l~-~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 118 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA----FMKAIH-NKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHH----HHHHTC-S-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHH----HHHHhc-cCCCEEEEEECCCCCCHHHH
Confidence 222222333343333222 2457777775 3444444332 334443 47899999999999865432
Q ss_pred HH------H-HhccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 443 VK------L-EAQKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 443 ~~------~-~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
.. . ......+++++||++|.| ++.+..+.+.+.
T Consensus 193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 11 1 112356889999999998 666655555443
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.46 E-value=1.9e-13 Score=154.21 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=78.0
Q ss_pred CCEEEEEccCCCChHHHHHhhhC---Cccc---------ccc------ccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTG---ATVL---------AED------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g---~~~~---------~~~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
..+|+|+|++|||||||+|+|++ .... ..+ ....|+......+.+ ++..+++|||||+.+.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df 88 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcch
Confidence 46899999999999999999984 2100 001 122333334444544 6789999999999542
Q ss_pred chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 374 LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 374 lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
. ..+...+..+|++++|+|++++...+....+..+. . .++|+++|+||+|+...
T Consensus 89 ~--------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~-~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 89 T--------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT-T---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp C--------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCCEEEEEECTTSTTC
T ss_pred H--------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHH-H---cCCCEEEEEECCCcccc
Confidence 2 12334567799999999999987776665554433 2 37899999999999764
No 184
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.46 E-value=3.2e-13 Score=141.50 Aligned_cols=88 Identities=32% Similarity=0.414 Sum_probs=68.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC--------------------CeeEEEeecccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN--------------------GGEFLLTDTVGFIQ 372 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~--------------------g~~i~LiDTpG~i~ 372 (536)
.+|+|+|.||||||||+|+|++....+.+.+++|++++.+.+.+++ +..+.+|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 3599999999999999999998766667888999999888765422 34689999999975
Q ss_pred cchh--hHHHHHHHhHHHHHhccceEEEEeCCC
Q 009371 373 KLPT--TLVAAFRATLEEISESSLLVHVVDISH 403 (536)
Q Consensus 373 ~lp~--~l~e~f~~tl~ei~~aDliLlVvD~s~ 403 (536)
.... .+. ...+..+..+|++++|+|+++
T Consensus 82 ~a~~~~~lg---~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLG---NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTT---HHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHH---HHHHHHHHhCCEEEEEEECCC
Confidence 4321 121 233456789999999999986
No 185
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.1e-13 Score=129.18 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=71.7
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS 390 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~ 390 (536)
..++|+++|++|||||||+|+|++..+.. ...+..+++.. .+ .+..+.+|||||+..... .....+ ...+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~-~~-~~~~~~l~Dt~G~~~~~~-~~~~~~---~~~~~ 117 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-DY-DGSGVTLVDFPGHVKLRY-KLSDYL---KTRAK 117 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CC-CCTTCSEEEETTCCBSSC-CHHHHH---HHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceee-ee-cCCeEEEEECCCCchHHH-HHHHHH---Hhhcc
Confidence 34689999999999999999999875422 11112222211 11 456788999999854321 111212 12234
Q ss_pred hccceEEEEeCC-CcchHHHH-HHHHHHHhhc---CCCCCCEEEEEEcCCCCCC
Q 009371 391 ESSLLVHVVDIS-HPLAEQQI-EAVDKVLSEL---DVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 391 ~aDliLlVvD~s-~~~~~~~~-~~v~~vL~~l---~~~~~piIvVlNKiDl~~~ 439 (536)
.+|++++|+|++ +....... ..+..++... ...+.|+++|+||+|+...
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 589999999998 54332222 2233333322 2247899999999998754
No 186
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=5.8e-13 Score=132.41 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=79.7
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccchhhHHHHHHHhHHHH-
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEI- 389 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei- 389 (536)
..+|+++|.+|||||||+|+|++.... ..+...+|.......+.+ ++..+.+|||||+.+..... ...++.....+
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~-~~~~~~i~~~l~ 113 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVN-HQALELIKGFLV 113 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEEC-HHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccch-HHHHHHHHHHHh
Confidence 357999999999999999999998753 344455566666665555 78899999999995432111 11111111111
Q ss_pred -HhccceEEEEeCCCc-chHHHHHHHHHHHhhcCCC-CCCEEEEEEcCCCCC
Q 009371 390 -SESSLLVHVVDISHP-LAEQQIEAVDKVLSELDVS-SIPKLMIWNKVDKVC 438 (536)
Q Consensus 390 -~~aDliLlVvD~s~~-~~~~~~~~v~~vL~~l~~~-~~piIvVlNKiDl~~ 438 (536)
..+|++++|+|++.. ....+...+..+...++.. ..|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 268999999887653 3333333333333333321 249999999999864
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.44 E-value=7e-13 Score=148.95 Aligned_cols=112 Identities=20% Similarity=0.203 Sum_probs=76.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccc------------cc------ccccccCCeeEEEEEeCCeeEEEeecccccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLA------------ED------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKL 374 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~------------~~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~l 374 (536)
.+|+|+|++|+|||||+++|++..... .+ ....+.......+.. ++..+++|||||+.+.
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~f- 87 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF- 87 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccch-
Confidence 479999999999999999998432110 00 012233333333433 6778999999998331
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
...+...+..+|++++|+|+++....+....+..+. . .++|+++|+||+|+.
T Consensus 88 -------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~-~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 -------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAE-R---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-H---TTCCEEEEEECGGGC
T ss_pred -------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHH-H---ccCCEEEEecCCchh
Confidence 123455667899999999998877665554443332 2 378999999999987
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.44 E-value=1.7e-12 Score=129.53 Aligned_cols=126 Identities=13% Similarity=0.079 Sum_probs=79.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeecccccccch--hhHHHHHHHhHHH
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP--TTLVAAFRATLEE 388 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp--~~l~e~f~~tl~e 388 (536)
.++|+++|.+|+|||||+|+|++..+. ..+...+|.......+.. ++..+.+|||||+.+... ......+...+ .
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~-~ 116 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL-L 116 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT-T
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh-h
Confidence 457999999999999999999987753 333344444444444444 778899999999954321 11111111110 1
Q ss_pred HHhccceEEEEeCCCc-chHHHHHHHHHHHhhcCC-CCCCEEEEEEcCCCCCC
Q 009371 389 ISESSLLVHVVDISHP-LAEQQIEAVDKVLSELDV-SSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 389 i~~aDliLlVvD~s~~-~~~~~~~~v~~vL~~l~~-~~~piIvVlNKiDl~~~ 439 (536)
...+|++++|+|++.. ....+...+..+...++. ...|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2368999999887542 333343444333333331 12699999999998754
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.43 E-value=6.6e-13 Score=145.96 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=79.7
Q ss_pred EEEEEccCCCChHHHHHhhh---CCc-----c--------c------cccccccccCCeeEEEEEeCCeeEEEeeccccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLT---GAT-----V--------L------AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFI 371 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~---g~~-----~--------~------~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i 371 (536)
.|+|+|+.++|||||..+|+ |.- + . .+.....|+....-.+.+ ++..++|+||||+.
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCCCGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCCCcH
Confidence 59999999999999999995 110 0 0 011123344444445555 88999999999995
Q ss_pred ccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 372 QKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 372 ~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
+. ...+...+..+|.+|+|+|+..+...+....|..+.+. ++|.|+++||+|....
T Consensus 112 DF--------~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 112 DF--------SEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GC--------SHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCCEEEEEECTTSCCC
T ss_pred HH--------HHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh----CCceEEEEecccchhc
Confidence 43 23344557889999999999999888877666555443 7899999999998653
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.41 E-value=2.2e-13 Score=130.41 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=88.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCccc------cccccccccCC------eeEEEEE-------------------eCCe
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATVL------AEDRLFATLDP------TTRRVQM-------------------KNGG 360 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~~------~~~~~~~Tld~------ttr~i~l-------------------~~g~ 360 (536)
.+.|+++|++|||||||+++|++.... +...+..+.+. ....+.+ ..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 467999999999999999999864211 01111111000 0000111 1235
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC-
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD- 439 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~- 439 (536)
.++++||+|... .|.. + ...++.+++|+|++....... ..... .+.|.++|+||+|+...
T Consensus 110 d~iiidt~G~~~-~~~~----~------~~~~~~~i~vvd~~~~~~~~~-----~~~~~---~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 110 DLLLIENVGNLI-CPVD----F------DLGENYRVVMVSVTEGDDVVE-----KHPEI---FRVADLIVINKVALAEAV 170 (221)
T ss_dssp SEEEEEEEEBSS-GGGG----C------CCSCSEEEEEEEGGGCTTHHH-----HCHHH---HHTCSEEEEECGGGHHHH
T ss_pred CEEEEeCCCCCC-CCch----h------ccccCcEEEEEeCCCcchhhh-----hhhhh---hhcCCEEEEecccCCcch
Confidence 788999999621 1111 0 014578899999877642211 11111 14689999999998532
Q ss_pred ---hhHHHHH---hccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 440 ---PQKVKLE---AQKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 440 ---~~~~~~~---~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
....... .....+++++||++|.|+++++++|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 1111111 1234689999999999999999999988754
No 191
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.41 E-value=8.8e-13 Score=136.51 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=64.1
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
++.++.|+||||+.... . + -...+|++++|+|++.+.. .+.+...+ ...+.++|+||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~--~-------~--v~~~~d~vl~v~d~~~~~~---~~~i~~~i-----~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE--T-------A--VADLTDFFLVLMLPGAGDE---LQGIKKGI-----FELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCH--H-------H--HHTTSSEEEEEECSCC---------CCTTH-----HHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcch--h-------h--HHhhCCEEEEEEcCCCccc---HHHHHHHH-----hccccEEEEEchhcc
Confidence 57789999999985421 1 1 1257999999999865421 11111001 123668888999986
Q ss_pred CChhH-------HHHHh---c-----cCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 438 CDPQK-------VKLEA---Q-----KREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 438 ~~~~~-------~~~~~---~-----~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
..... +.... . ..++++++||++|.|+++|++.|.+.+.
T Consensus 207 ~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 207 DGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 53321 11111 1 1468999999999999999999998765
No 192
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.40 E-value=3.1e-12 Score=144.54 Aligned_cols=184 Identities=15% Similarity=0.152 Sum_probs=106.8
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCc--cc----c------cc------ccccccCCeeEEEEEeCC-------eeEEEee
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGAT--VL----A------ED------RLFATLDPTTRRVQMKNG-------GEFLLTD 366 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~--~~----~------~~------~~~~Tld~ttr~i~l~~g-------~~i~LiD 366 (536)
.++|+|+|+.|+|||||+++|+... +. + .+ ....|+......+.+ ++ ..++|||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINIID 88 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEEe
Confidence 4679999999999999999996421 00 0 00 011222222233333 34 6899999
Q ss_pred cccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHH
Q 009371 367 TVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLE 446 (536)
Q Consensus 367 TpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~ 446 (536)
|||+.+ +...+...+..+|++|+|+|+++....+....+.... ..++|+++|+||+|+...
T Consensus 89 TPG~~d--------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~----~~~ip~ilviNKiD~~~~------- 149 (704)
T 2rdo_7 89 TPGHVD--------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN----KYKVPRIAFVNKMDRMGA------- 149 (704)
T ss_pred CCCccc--------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHH----HcCCCEEEEEeCCCcccc-------
Confidence 999843 1123445667899999999999887655554443332 237899999999997532
Q ss_pred hccCCCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEcc-C-c-eEEEEEcCHHH
Q 009371 447 AQKREDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTE-N-G-TLVKAHVPLRF 523 (536)
Q Consensus 447 ~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~-~-g-~~~~~~lp~~~ 523 (536)
.++++++.|.+.+......+ .+|...++-+..+.+......+.|.+ + | ......+|.++
T Consensus 150 ----------------~~~~~~~~l~~~l~~~~~~~--~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~ 211 (704)
T 2rdo_7 150 ----------------NFLKVVNQIKTRLGANPVPL--QLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADM 211 (704)
T ss_pred ----------------cHHHHHHHHHHHhCCCceeE--EccccccccccceeehhhhhhhcccCccCCcceEEecCCHHH
Confidence 35666777777776554333 35544332222222222222233432 1 3 23334567666
Q ss_pred HHHHHHHHHh
Q 009371 524 ARLLTPMRQM 533 (536)
Q Consensus 524 ~~~~~~~~~~ 533 (536)
.+...+++..
T Consensus 212 ~~~~~~~~~~ 221 (704)
T 2rdo_7 212 VELANEWHQN 221 (704)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.36 E-value=3.9e-13 Score=132.23 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=94.3
Q ss_pred CCEEEEEccCCCChHHHHHhhh-----CCcccccccccc--cc---------CC-eeEEE--------------------
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLT-----GATVLAEDRLFA--TL---------DP-TTRRV-------------------- 354 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~-----g~~~~~~~~~~~--Tl---------d~-ttr~i-------------------- 354 (536)
.+.++++|.+|||||||++.|. |.++.+-+.... .. +. +.+.+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4578999999999999999998 655432221100 00 00 00000
Q ss_pred ----------EEeCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHH-HHHHHHhhcCCC
Q 009371 355 ----------QMKNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIE-AVDKVLSELDVS 423 (536)
Q Consensus 355 ----------~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~-~v~~vL~~l~~~ 423 (536)
.+..+..++++||||+.+..... .........+.. +++++|+|++......+.. .....+......
T Consensus 94 ~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~--~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 94 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFH--EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS--HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh--hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 00112378999999985422110 001112223345 8899999986554433322 111111111123
Q ss_pred CCCEEEEEEcCCCCCChhH--HH-------------------------------HHhccCCCEEEEeccCCCCHHHHHHH
Q 009371 424 SIPKLMIWNKVDKVCDPQK--VK-------------------------------LEAQKREDVVCISALSGNGLDEFCSA 470 (536)
Q Consensus 424 ~~piIvVlNKiDl~~~~~~--~~-------------------------------~~~~~~~~~v~vSAktg~GIdeL~~~ 470 (536)
++|+++|+||+|+....+. .. .......+++++||++|.|+++|+++
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 6799999999998764311 00 00012247899999999999999999
Q ss_pred HHHHhcc
Q 009371 471 VQEKLKD 477 (536)
Q Consensus 471 I~~~l~~ 477 (536)
|.+.+..
T Consensus 251 i~~~~~~ 257 (262)
T 1yrb_A 251 AYEHYCT 257 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9987753
No 194
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.29 E-value=1.5e-12 Score=145.63 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=104.7
Q ss_pred EEEEEccCCCChHHHHHhhh---CCccc---c------cc------ccccccCCeeEEEEEeCCeeEEEeecccccccch
Q 009371 314 VVSLVGYTNAGKSTLLNRLT---GATVL---A------ED------RLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~---g~~~~---~------~~------~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~lp 375 (536)
.|+|+|+.++|||||..+|+ |.-.. + .| ....|+....-.+.+ ++..++|+||||+.+.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF-- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF-- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST--
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH--
Confidence 58999999999999999985 22100 0 00 012233333333433 7788999999999542
Q ss_pred hhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH-----HH------
Q 009371 376 TTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK-----VK------ 444 (536)
Q Consensus 376 ~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~-----~~------ 444 (536)
...+...++.+|.+|+|+|+..+...+....+..+.+. ++|.|+++||+|....+.. +.
T Consensus 81 ------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~ 150 (638)
T 3j25_A 81 ------LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAE 150 (638)
T ss_dssp ------HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCC
T ss_pred ------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCC
Confidence 33455567889999999999999887776666555544 6899999999997542100 00
Q ss_pred --------------------------------------------------------HHhccCCCEEEEeccCCCCHHHHH
Q 009371 445 --------------------------------------------------------LEAQKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 445 --------------------------------------------------------~~~~~~~~~v~vSAktg~GIdeL~ 468 (536)
.......|+++.||++|.|++.|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LL 230 (638)
T 3j25_A 151 IVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLI 230 (638)
T ss_dssp CCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHH
T ss_pred ccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHh
Confidence 000123578899999999999999
Q ss_pred HHHHHHhcc
Q 009371 469 SAVQEKLKD 477 (536)
Q Consensus 469 ~~I~~~l~~ 477 (536)
+.|.+.+..
T Consensus 231 d~i~~~~p~ 239 (638)
T 3j25_A 231 EVITNKFYS 239 (638)
T ss_dssp HHHHHSCCC
T ss_pred hhhhccccC
Confidence 999987764
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.29 E-value=2.1e-12 Score=124.06 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=39.5
Q ss_pred CCCEEEEEEcCCCCCC----hhHHHHH-h--ccCCCEEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 424 SIPKLMIWNKVDKVCD----PQKVKLE-A--QKREDVVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 424 ~~piIvVlNKiDl~~~----~~~~~~~-~--~~~~~~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
+.|.++|+||+|+... ....... . ....+++++||++|.|+++++++|.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 4688999999998642 1111111 1 235689999999999999999999887653
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.28 E-value=9.7e-12 Score=136.76 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccc---cccccccccCCeeEEEEEe------------------------------
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVL---AEDRLFATLDPTTRRVQMK------------------------------ 357 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~~~~~Tld~ttr~i~l~------------------------------ 357 (536)
..+.|+|+|.+|||||||+|+|+|..+. +...+.++.. ..+...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~---~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF---VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE---EEEECCSSSEEECCC------------------CCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE---EEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 4579999999999999999999998753 2222222110 000000
Q ss_pred CC-----------eeEEEeecccccccchhhHHHH--H-HHhHHHHHhccceEEEEeCCCc-chHHHHHHHHHHHhhcCC
Q 009371 358 NG-----------GEFLLTDTVGFIQKLPTTLVAA--F-RATLEEISESSLLVHVVDISHP-LAEQQIEAVDKVLSELDV 422 (536)
Q Consensus 358 ~g-----------~~i~LiDTpG~i~~lp~~l~e~--f-~~tl~ei~~aDliLlVvD~s~~-~~~~~~~~v~~vL~~l~~ 422 (536)
++ ..+.||||||+.+......... | ..+...+..+|++++|+|+++. ...... .++..+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~----~~l~~l~~ 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS----EAIGALRG 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH----HHHHHTTT
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH----HHHHHHHh
Confidence 00 3588999999964222111110 2 2234456789999999999874 333332 23444444
Q ss_pred CCCCEEEEEEcCCCCCCh
Q 009371 423 SSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 423 ~~~piIvVlNKiDl~~~~ 440 (536)
.+.|+++|+||+|+....
T Consensus 217 ~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp CGGGEEEEEECGGGSCHH
T ss_pred cCCCEEEEEECCCccCHH
Confidence 567999999999998654
No 197
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.26 E-value=2.2e-11 Score=137.71 Aligned_cols=185 Identities=16% Similarity=0.156 Sum_probs=116.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc--------ccc----------ccccccccCCeeEEEEEe------CCeeEEEeecc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT--------VLA----------EDRLFATLDPTTRRVQMK------NGGEFLLTDTV 368 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~--------~~~----------~~~~~~Tld~ttr~i~l~------~g~~i~LiDTp 368 (536)
..|+|+|+.++|||||..+|+-.. +.. +.....|+..+.-.+.+. ++..++|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 479999999999999999986210 100 011122333333333332 24679999999
Q ss_pred cccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHHHHHhc
Q 009371 369 GFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKVKLEAQ 448 (536)
Q Consensus 369 G~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~~~~~~ 448 (536)
|+.+. ...+...++.+|++|+|+|+..+...+....+..+++. ++|.++|+||+|..
T Consensus 94 GHvDF--------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~----------- 150 (709)
T 4fn5_A 94 GHVDF--------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ----------- 150 (709)
T ss_dssp SCTTC--------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST-----------
T ss_pred CCccc--------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc-----------
Confidence 99542 23344567889999999999999988887777776665 78999999999953
Q ss_pred cCCCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHhceEEEEEEccC--c-eEEEEEcCHHHHH
Q 009371 449 KREDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTEN--G-TLVKAHVPLRFAR 525 (536)
Q Consensus 449 ~~~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~~~v~~~~y~~~--g-~~~~~~lp~~~~~ 525 (536)
+..++.+.+.+.+.+......++ +|...++-+..+.+......+.|.++ | ......+|..+..
T Consensus 151 ------------~a~~~~~~~ei~~~l~~~~~~~~--~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 216 (709)
T 4fn5_A 151 ------------GANFLRVVEQIKKRLGHTPVPVQ--LAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKD 216 (709)
T ss_dssp ------------TCCHHHHHHHHHHHHCSCEEESE--EEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHH
T ss_pred ------------CccHHHHHHHhhhhcccceeeee--cccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHH
Confidence 45678888888888877655444 34333222111111122233444432 3 4444567888887
Q ss_pred HHHHHHHhh
Q 009371 526 LLTPMRQMC 534 (536)
Q Consensus 526 ~~~~~~~~l 534 (536)
....++..+
T Consensus 217 ~~~~~~~~~ 225 (709)
T 4fn5_A 217 LAEEWRSSM 225 (709)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.22 E-value=4.1e-11 Score=122.03 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=76.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccc------cccCCeeEEEEEe-C--CeeEEEeecccccccch-----hh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLF------ATLDPTTRRVQMK-N--GGEFLLTDTVGFIQKLP-----TT 377 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~------~Tld~ttr~i~l~-~--g~~i~LiDTpG~i~~lp-----~~ 377 (536)
..|+|+|++|||||||+|+|+|.... ..+..+ .+.......+.+. + ...+.+|||+|+..... ..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 47899999999999999999886332 221110 1111111111111 1 23678999999832110 01
Q ss_pred HHH----HHHHhHHHHH----------hccceEEEEeCCC-cchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH
Q 009371 378 LVA----AFRATLEEIS----------ESSLLVHVVDISH-PLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK 442 (536)
Q Consensus 378 l~e----~f~~tl~ei~----------~aDliLlVvD~s~-~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~ 442 (536)
+.. .+...+..+. .+++++++++.+. .....+. .+++.+. ...|+++|+||+|+....+.
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~-~~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIH-NKVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHT-TTSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHH-hcCCEEEEEEeCCCCCHHHH
Confidence 111 1112222221 1233666666543 3444433 3344443 35799999999999864321
Q ss_pred H-------HHHhccCCCEEEEeccCCCCHHHHHHHHHHHhccc
Q 009371 443 V-------KLEAQKREDVVCISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 443 ~-------~~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
. ........+++++||++| |+++++..+.+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 1 112234578999999999 9999999998887654
No 199
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=1.1e-10 Score=123.11 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=69.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeEEEEEeC----------------CeeEEEeecccccccch
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTRRVQMKN----------------GGEFLLTDTVGFIQKLP 375 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr~i~l~~----------------g~~i~LiDTpG~i~~lp 375 (536)
..|+|+|+||||||||+|+|+|..+ .+.+.+++|.+++.+.+.+++ +..+.++||||+.....
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 5799999999999999999999877 678889999999999888743 13578999999875432
Q ss_pred hh--HHHHHHHhHHHHHhccceEEEEeCCC
Q 009371 376 TT--LVAAFRATLEEISESSLLVHVVDISH 403 (536)
Q Consensus 376 ~~--l~e~f~~tl~ei~~aDliLlVvD~s~ 403 (536)
.. +.. ..+..+..+|.+++|+|+++
T Consensus 101 ~~e~L~~---~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 101 TGVGLGN---AFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SSSSSCH---HHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhccc
Confidence 21 111 23455678999999999864
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=3.9e-11 Score=127.65 Aligned_cols=159 Identities=16% Similarity=0.239 Sum_probs=73.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccccccc--CCeeE--EEEE---eCC--eeEEEeecccccccch-----hhH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATL--DPTTR--RVQM---KNG--GEFLLTDTVGFIQKLP-----TTL 378 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tl--d~ttr--~i~l---~~g--~~i~LiDTpG~i~~lp-----~~l 378 (536)
+.|+|+|++|||||||+|+|+|......+...... .++.+ .+.+ ..+ ..+.+|||+|+..... ...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 46899999999999999999997653222111111 11111 1111 112 2578999999954321 111
Q ss_pred HHHHHHhHHH------------HHh--ccceEEEEeCC-CcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH
Q 009371 379 VAAFRATLEE------------ISE--SSLLVHVVDIS-HPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV 443 (536)
Q Consensus 379 ~e~f~~tl~e------------i~~--aDliLlVvD~s-~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~ 443 (536)
...+...+.. +.. +++++++++.+ +.....+.. +++.+. .+.|+|+|+||+|+....+..
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~----~lk~L~-~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE----FMKRLH-EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHH----HHHHHT-TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHH----HHHHHh-ccCcEEEEEEcccCccHHHHH
Confidence 1111111111 112 34566666665 455554433 333443 278999999999998643321
Q ss_pred H-------HHhccCCCEEEEeccCCCCHHHHHHHHHHHhc
Q 009371 444 K-------LEAQKREDVVCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 444 ~-------~~~~~~~~~v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
. .....+.+++.+||+++.++++++..|.+.+.
T Consensus 187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 1 11234578899999999999998887776553
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.07 E-value=1e-10 Score=134.69 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=77.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccc----------------cccccccCCeeEEEEEe---------------CCee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAE----------------DRLFATLDPTTRRVQMK---------------NGGE 361 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~----------------~~~~~Tld~ttr~i~l~---------------~g~~ 361 (536)
.+|+|+|++|+|||||+++|++....+. .....|+......+.+. .+..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 4799999999999999999985411110 01122333333334442 1467
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 362 FLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 362 i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
+.||||||+.+.. ..+...+..+|++|+|+|++++...+....+..... .++|+++|+||+|+.
T Consensus 100 i~liDTPG~~df~--------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 100 INLIDSPGHVDFS--------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEECCCCCCSSC--------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred EEEEECcCchhhH--------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 8999999995422 123345678999999999999887776655554443 378999999999986
No 202
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.01 E-value=3.3e-10 Score=119.53 Aligned_cols=89 Identities=28% Similarity=0.397 Sum_probs=53.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeC----------------CeeEEEeecccccccchh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKN----------------GGEFLLTDTVGFIQKLPT 376 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~----------------g~~i~LiDTpG~i~~lp~ 376 (536)
.+|+|+|.+|||||||+|+|++..+.+.+.+++|.++..+.+.+++ ...+.+|||||+......
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~ 102 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHN 102 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccch
Confidence 4699999999999999999999888778889999999988887643 224899999999653221
Q ss_pred hHHHHH-HHhHHHHHhccceEEEEeCCC
Q 009371 377 TLVAAF-RATLEEISESSLLVHVVDISH 403 (536)
Q Consensus 377 ~l~e~f-~~tl~ei~~aDliLlVvD~s~ 403 (536)
.+.+ ...+..+..+|++++|+|+++
T Consensus 103 --~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 103 --GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC--
T ss_pred --hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 1111 134567789999999999874
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=1.2e-08 Score=108.54 Aligned_cols=122 Identities=23% Similarity=0.299 Sum_probs=68.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccC-C-eeEEEE--EeCC---eeEEEeecccccccchhh--------
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLD-P-TTRRVQ--MKNG---GEFLLTDTVGFIQKLPTT-------- 377 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld-~-ttr~i~--l~~g---~~i~LiDTpG~i~~lp~~-------- 377 (536)
+.++|+|++|||||||+|.|+|..+.. ....... . +...+. +... ..+.++||+|+.......
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g--~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEG--EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccC--CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 459999999999999999999975321 1111111 1 112222 1121 267899999996532211
Q ss_pred -HHHHHHHhHHHHH----------hc--c-ceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 378 -LVAAFRATLEEIS----------ES--S-LLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 378 -l~e~f~~tl~ei~----------~a--D-liLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
+...+...+.... .+ | ++++++|+.++....+.+. ++.+. .+.|+|+|+||+|.+...+
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Diei----lk~L~-~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVT----MKKLD-SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHH----HHHTC-SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHH----HHHHh-hCCCEEEEEcchhccchHH
Confidence 1223333333331 11 2 4667788887777766543 44444 4789999999999887543
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.83 E-value=3.9e-09 Score=114.73 Aligned_cols=154 Identities=22% Similarity=0.228 Sum_probs=90.5
Q ss_pred CCEEEEEccCCCChHHHHHhhh------CCccccccc-cc---c--------c---cCC----eeEE--------EE-E-
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLT------GATVLAEDR-LF---A--------T---LDP----TTRR--------VQ-M- 356 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~------g~~~~~~~~-~~---~--------T---ld~----ttr~--------i~-l- 356 (536)
..+|+|+|++||||||+++.|+ |..+...+. .+ + + ++. +..+ +. +
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999998 654432110 00 0 0 100 0000 00 0
Q ss_pred eCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCE-EEEEEcCC
Q 009371 357 KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPK-LMIWNKVD 435 (536)
Q Consensus 357 ~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~pi-IvVlNKiD 435 (536)
..+.+++|+||||..... ..+......... +..+|.+++|+|++.... ....+.. +.. .+|+ ++|+||+|
T Consensus 181 ~~~~DvvIIDTpG~~~~~-~~l~~el~~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~-~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQE-DSLFEEMLQVAN-AIQPDNIVYVMDASIGQA--CEAQAKA-FKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HTTCCEEEEEECCCCTTC-HHHHHHHHHHHH-HHCCSEEEEEEETTCCTT--HHHHHHH-HHH----HHCCCCEEEECTT
T ss_pred HCCCcEEEEeCCCCcccc-hhHHHHHHHHHh-hhcCceEEEEEecccccc--HHHHHHH-HHh----hcCceEEEEeCCc
Confidence 156789999999986422 122222222222 347899999999987643 2222222 222 1464 89999999
Q ss_pred CCCChhH-HHHHhcc------------------CCCEEEEeccCCCC-HHHHHHHHHHH
Q 009371 436 KVCDPQK-VKLEAQK------------------REDVVCISALSGNG-LDEFCSAVQEK 474 (536)
Q Consensus 436 l~~~~~~-~~~~~~~------------------~~~~v~vSAktg~G-IdeL~~~I~~~ 474 (536)
....... ....... ..+.+++||..|.| +++|++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8754321 1111111 22345689999999 99999999866
No 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.81 E-value=4.3e-08 Score=104.08 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=88.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccccc-ccCCeeEEEEEeC--CeeEEEeecccccccchhhHHHHHHHhHHH-
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFA-TLDPTTRRVQMKN--GGEFLLTDTVGFIQKLPTTLVAAFRATLEE- 388 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~-Tld~ttr~i~l~~--g~~i~LiDTpG~i~~lp~~l~e~f~~tl~e- 388 (536)
..++|+|++|||||||+|+|+|......+.... ..+.+...+.+.. ...+.++|++|+... ... ....+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~---~~~~L~~~ 144 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFP---PDTYLEKM 144 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCC---HHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHH---HHHHHHHc
Confidence 369999999999999999999954322222111 0111111122211 125789999998432 111 1222222
Q ss_pred -HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC---------C--hh----HHHHHh-----
Q 009371 389 -ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC---------D--PQ----KVKLEA----- 447 (536)
Q Consensus 389 -i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~---------~--~~----~~~~~~----- 447 (536)
+...+..++ ++... ...+... +..++.. .++|+++|+||.|+.- . .. .+....
T Consensus 145 ~L~~~~~~~~-lS~G~-~~kqrv~-la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~ 218 (413)
T 1tq4_A 145 KFYEYDFFII-ISATR-FKKNDID-IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 218 (413)
T ss_dssp TGGGCSEEEE-EESSC-CCHHHHH-HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCeEE-eCCCC-ccHHHHH-HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 233354444 66553 2333333 3333433 2679999999999741 1 11 111111
Q ss_pred c---cCCCEEEEec--cCCCCHHHHHHHHHHHhcccc
Q 009371 448 Q---KREDVVCISA--LSGNGLDEFCSAVQEKLKDSM 479 (536)
Q Consensus 448 ~---~~~~~v~vSA--ktg~GIdeL~~~I~~~l~~~~ 479 (536)
. ....+|++|+ .++.|+++|.+.|.+.+....
T Consensus 219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1 1346899999 666779999999999987764
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.73 E-value=2e-09 Score=112.55 Aligned_cols=140 Identities=21% Similarity=0.110 Sum_probs=79.4
Q ss_pred EEEEEccCCCChHHHHHhhhCC------ccccccccccccCCeeEEEEEeCCeeEEEeecccccccc--hhhHHHHHHHh
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA------TVLAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQKL--PTTLVAAFRAT 385 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~------~~~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~l--p~~l~e~f~~t 385 (536)
.|+++|.+|+|||||+|+|++. ...+.+.+++|.+ ...+.-+..+.++||||+.... ...+.. ..
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~----~~~~~~~~~~~liDtPG~~~~~~~~~~l~~---~~ 236 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD----MIEIPLESGATLYDTPGIINHHQMAHFVDA---RD 236 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE----EEEEECSTTCEEEECCSCCCCSSGGGGSCT---TT
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe----eEEEEeCCCeEEEeCCCcCcHHHHHHHHhH---HH
Confidence 4999999999999999999986 2222333332222 1222223357899999997532 111111 12
Q ss_pred HHHH---HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HH-HHhccCCCEEEEec
Q 009371 386 LEEI---SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VK-LEAQKREDVVCISA 458 (536)
Q Consensus 386 l~ei---~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~-~~~~~~~~~v~vSA 458 (536)
+..+ ...|.+++++|.........+. .+..+...+.|+++|+||+|....... .. ........+.+.++
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCG
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCc
Confidence 2333 5679999999985332111111 133344456899999999998753211 11 11122344555566
Q ss_pred cCCCCH
Q 009371 459 LSGNGL 464 (536)
Q Consensus 459 ktg~GI 464 (536)
.+..++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 655554
No 207
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.71 E-value=3e-08 Score=102.60 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=50.0
Q ss_pred CCeeEEEeecccccccchhhHHHHHHH-hHHHHHhccceEEEEeCC----------Ccch-HHHHHHHHHHHhhcCCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESSLLVHVVDIS----------HPLA-EQQIEAVDKVLSELDVSSI 425 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aDliLlVvD~s----------~~~~-~~~~~~v~~vL~~l~~~~~ 425 (536)
++..+.+|||+|. +.++. ....+..++++|+|+|++ +... .+....+..++..-...+.
T Consensus 159 ~~v~l~iwDtaGQ---------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 159 KDIPFHLIDVGGQ---------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp SSCEEEEEECCSC---------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred eeeeeccccCCCc---------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 5668899999998 33443 334568899999999998 3332 2333444555544344678
Q ss_pred CEEEEEEcCCCCC
Q 009371 426 PKLMIWNKVDKVC 438 (536)
Q Consensus 426 piIvVlNKiDl~~ 438 (536)
|+++|+||+|+..
T Consensus 230 piiLv~NK~DL~~ 242 (340)
T 4fid_A 230 VKLIFLNKMDLFE 242 (340)
T ss_dssp EEEEEEECHHHHH
T ss_pred eEEEEEECchhhh
Confidence 9999999999853
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.71 E-value=4e-09 Score=110.31 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=66.8
Q ss_pred EEEEEccCCCChHHHHHhhhCCcccc-cccc-ccccCCeeEEEE-EeCCeeEEEeecccccccc--hhhHHHHHHHhHHH
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLA-EDRL-FATLDPTTRRVQ-MKNGGEFLLTDTVGFIQKL--PTTLVAAFRATLEE 388 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~-~~~~-~~Tld~ttr~i~-l~~g~~i~LiDTpG~i~~l--p~~l~e~f~~tl~e 388 (536)
.|+++|.+|+|||||+|+|++..... .... .+....+|+... +.-+..+.++||||+.... ...+.......+..
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~ 241 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLITP 241 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSC
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhcc
Confidence 49999999999999999999863211 0011 111222332221 2222348899999997532 11111111111111
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
....+.+++++|........... .+..+...+.|+++|+||+|....
T Consensus 242 ~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 242 TKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp SSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEE
T ss_pred ccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCcccccc
Confidence 24568889999874332111111 133334456799999999998754
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.64 E-value=1e-07 Score=95.43 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=67.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccc-c--ccCCe--eEEEEE-eCC----eeEEEeecccccccchh-----h
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLF-A--TLDPT--TRRVQM-KNG----GEFLLTDTVGFIQKLPT-----T 377 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~-~--Tld~t--tr~i~l-~~g----~~i~LiDTpG~i~~lp~-----~ 377 (536)
++++|+|++|||||||+|.|+|......+... . ....+ .+.+.+ ... ..+.++|++|+...... .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 46999999999999999999986433222110 0 01111 112222 111 25789999998543211 1
Q ss_pred HHH----HHHHhH-HH----------HHhccceEEEEeCC-CcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh
Q 009371 378 LVA----AFRATL-EE----------ISESSLLVHVVDIS-HPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ 441 (536)
Q Consensus 378 l~e----~f~~tl-~e----------i~~aDliLlVvD~s-~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~ 441 (536)
... .+...+ .+ +..++++++++|.. ++....+.+.+..+ ... .++|+|+||+|.....+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L----~~~-~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHL----SKV-VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHH----HTT-SEEEEEETTGGGSCHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHH----Hhc-CcEEEEEeccccCCHHH
Confidence 111 111111 11 12357788888854 66666665544332 222 79999999999887543
No 210
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.57 E-value=3.4e-08 Score=102.79 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=76.0
Q ss_pred EEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhccceEEEEeCCCcc----------h-HHHHHHHHHHHhh
Q 009371 352 RRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESSLLVHVVDISHPL----------A-EQQIEAVDKVLSE 419 (536)
Q Consensus 352 r~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aDliLlVvD~s~~~----------~-~~~~~~v~~vL~~ 419 (536)
..+.+ ++..+.+|||+|..+ ++. ....+..++++|+|+|+++.. . .+....+..++..
T Consensus 186 ~~~~~-~~~~l~iwDt~GQe~---------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 186 THFTF-KDLHFKMFDVGGQRS---------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp EEEEE-TTEEEEEEEECCSGG---------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEee-CCeeEEEEeCCCchh---------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 34444 678899999999832 222 223457899999999999842 2 2223333444433
Q ss_pred cCCCCCCEEEEEEcCCCCCC-------------------hhHH-HHHh-----------ccCCCEEEEeccCCCCHHHHH
Q 009371 420 LDVSSIPKLMIWNKVDKVCD-------------------PQKV-KLEA-----------QKREDVVCISALSGNGLDEFC 468 (536)
Q Consensus 420 l~~~~~piIvVlNKiDl~~~-------------------~~~~-~~~~-----------~~~~~~v~vSAktg~GIdeL~ 468 (536)
-...+.|+|+|+||+|+... .+.. .... .....++++||++|.||++++
T Consensus 256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence 23357899999999998421 1111 1111 133467899999999999999
Q ss_pred HHHHHHhcc
Q 009371 469 SAVQEKLKD 477 (536)
Q Consensus 469 ~~I~~~l~~ 477 (536)
+++.+.+..
T Consensus 336 ~~v~~~i~~ 344 (353)
T 1cip_A 336 DAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.56 E-value=9.8e-08 Score=105.49 Aligned_cols=97 Identities=26% Similarity=0.248 Sum_probs=59.0
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE------eCCeeEEEeecccccccch---hhHHHH
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM------KNGGEFLLTDTVGFIQKLP---TTLVAA 381 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l------~~g~~i~LiDTpG~i~~lp---~~l~e~ 381 (536)
+..+|+|+|+||+|||||+|+|+|..... +...+|.+.|.+...+ ..+..+.++||||+.+... ..-...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 44679999999999999999999986432 3333333444433322 2567899999999975321 111122
Q ss_pred HHHhHHHHHhccceEEEEeCCCcchHHHHHHH
Q 009371 382 FRATLEEISESSLLVHVVDISHPLAEQQIEAV 413 (536)
Q Consensus 382 f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v 413 (536)
| ++..+ .++ ++|+|+.......+...+
T Consensus 116 f--ala~l-lss--~lv~n~~~~i~~~dl~~l 142 (592)
T 1f5n_A 116 F--ALAVL-LSS--TFVYNSIGTINQQAMDQL 142 (592)
T ss_dssp H--HHHHH-HCS--EEEEEEESCSSHHHHHTT
T ss_pred H--HHHHH-hcC--eEEEECCCCccHHHHHHH
Confidence 2 12222 233 566777777766665543
No 212
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.54 E-value=6.9e-08 Score=100.82 Aligned_cols=115 Identities=13% Similarity=0.153 Sum_probs=73.0
Q ss_pred EEEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhccceEEEEeCCC----------cchH-HHHHHHHHHHhh
Q 009371 352 RRVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESSLLVHVVDISH----------PLAE-QQIEAVDKVLSE 419 (536)
Q Consensus 352 r~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aDliLlVvD~s~----------~~~~-~~~~~v~~vL~~ 419 (536)
..+.+ ++..+.+|||+|.. .++. ....+..++++|+|+|+++ .... +....+..++..
T Consensus 194 ~~~~~-~~~~l~i~Dt~Gq~---------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 194 YDFEI-KNVPFKMVDVGGQR---------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp EEEEE-TTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEeee-CCeEEEEEeccchh---------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 34444 67889999999982 2222 2234578999999999998 3332 223334444443
Q ss_pred cCCCCCCEEEEEEcCCCCCC--------------------hhHHHHHh------------ccCCCEEEEeccCCCCHHHH
Q 009371 420 LDVSSIPKLMIWNKVDKVCD--------------------PQKVKLEA------------QKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 420 l~~~~~piIvVlNKiDl~~~--------------------~~~~~~~~------------~~~~~~v~vSAktg~GIdeL 467 (536)
-...+.|+|+|+||+|+... .+...... .....++++||++|.||+++
T Consensus 264 ~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v 343 (362)
T 1zcb_A 264 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 343 (362)
T ss_dssp GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence 23357899999999998521 11111110 12346789999999999999
Q ss_pred HHHHHHHhc
Q 009371 468 CSAVQEKLK 476 (536)
Q Consensus 468 ~~~I~~~l~ 476 (536)
++++.+.+.
T Consensus 344 F~~v~~~i~ 352 (362)
T 1zcb_A 344 FRDVKDTIL 352 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=5.5e-07 Score=96.23 Aligned_cols=145 Identities=16% Similarity=0.204 Sum_probs=82.0
Q ss_pred CCEEEEEccCCCChHHHHHhhh------CCcccccc-ccc---c--------c-cCCeeEEE--------------E--E
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLT------GATVLAED-RLF---A--------T-LDPTTRRV--------------Q--M 356 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~------g~~~~~~~-~~~---~--------T-ld~ttr~i--------------~--l 356 (536)
..+|+++|++||||||++..|+ |..+..-+ ..+ + . ........ . .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999997 33322100 000 0 0 00000000 0 0
Q ss_pred eCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCC
Q 009371 357 KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDK 436 (536)
Q Consensus 357 ~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl 436 (536)
..+.+++|+||||...... .+...... +..+..+|.+++|+|++..... ...+..+... -.+..+|+||+|.
T Consensus 180 ~~~~DvVIIDTaGrl~~d~-~lm~el~~-i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDK-ALIEEMKQ-ISNVIHPHEVILVIDGTIGQQA--YNQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HTTCSEEEEECCCCSSCCH-HHHHHHHH-HHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHS----CTTEEEEEECCSS
T ss_pred hCCCCEEEEECCCcccchH-HHHHHHHH-HHHhhcCceEEEEEeCCCchhH--HHHHHHHHhh----CCCeEEEEECCCC
Confidence 1346899999999754322 22232322 3344568999999999875332 2222222222 2356799999998
Q ss_pred CCChhH-HHHHhccCCCEEEEeccCCCCHHH
Q 009371 437 VCDPQK-VKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 437 ~~~~~~-~~~~~~~~~~~v~vSAktg~GIde 466 (536)
...... .........|+.+++. |+++++
T Consensus 252 ~~~gG~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 252 SAKGGGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp CSSHHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred cccccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 765432 2233345678888886 665544
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.46 E-value=1.4e-07 Score=94.99 Aligned_cols=94 Identities=21% Similarity=0.387 Sum_probs=70.0
Q ss_pred hHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhHH---HHHhccCCCE
Q 009371 377 TLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQKV---KLEAQKREDV 453 (536)
Q Consensus 377 ~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~~---~~~~~~~~~~ 453 (536)
++..+++.+.+.+..+|++++|+|+.++..... ..+.+++ .++|.++|+||+|+.+..... ......+.++
T Consensus 9 hm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~ 82 (282)
T 1puj_A 9 HMAKARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS 82 (282)
T ss_dssp CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence 345677888899999999999999998865432 1233333 478999999999998743211 1122235689
Q ss_pred EEEeccCCCCHHHHHHHHHHHhc
Q 009371 454 VCISALSGNGLDEFCSAVQEKLK 476 (536)
Q Consensus 454 v~vSAktg~GIdeL~~~I~~~l~ 476 (536)
+++||++|.|+++|++.+.+.+.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 99999999999999998887764
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.42 E-value=2.7e-07 Score=92.99 Aligned_cols=58 Identities=34% Similarity=0.418 Sum_probs=36.4
Q ss_pred CCEEEEEccCCCChHHHHHhhhCCcc-ccccccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGATV-LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~~~-~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
..+|+++|+||+|||||+|+|++... .+.+.+++|.+... +.+ +..+.++||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV--GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE--TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe--CCCEEEEECcCcCCC
Confidence 35799999999999999999998763 34444554444321 222 457899999999753
No 216
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.42 E-value=2.1e-06 Score=95.42 Aligned_cols=126 Identities=18% Similarity=0.299 Sum_probs=72.1
Q ss_pred CCCCCEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCee-------------EE---------------------
Q 009371 309 SVPVPVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTT-------------RR--------------------- 353 (536)
Q Consensus 309 ~~~~~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~tt-------------r~--------------------- 353 (536)
...+|.++|+|++|||||||+++|+|...+ ..+. .+..+.. +.
T Consensus 42 ~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~--vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~ 119 (608)
T 3szr_A 42 DLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGI--VTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN 119 (608)
T ss_dssp SCCCCCEECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH
T ss_pred cccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCe--EEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH
Confidence 566788999999999999999999997432 1111 1111100 00
Q ss_pred ---------------------EEEeCCeeEEEeecccccc----cchhhHHHHHHHhHHHH-Hhc-cceEEEEeCCCcch
Q 009371 354 ---------------------VQMKNGGEFLLTDTVGFIQ----KLPTTLVAAFRATLEEI-SES-SLLVHVVDISHPLA 406 (536)
Q Consensus 354 ---------------------i~l~~g~~i~LiDTpG~i~----~lp~~l~e~f~~tl~ei-~~a-DliLlVvD~s~~~~ 406 (536)
+..+....+.++|.||+.. .++......+...+..+ ... .+++.+++......
T Consensus 120 ~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 120 KAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp HHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 1112234688999999753 23334444455555543 333 45666666443322
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCC
Q 009371 407 EQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCD 439 (536)
Q Consensus 407 ~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~ 439 (536)
.. ....++..+...+.+.|+|+||.|++..
T Consensus 200 ~~---~~l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 200 TT---EALSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp TC---HHHHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred cH---HHHHHHHHHhhcCCceEEEecchhhcCc
Confidence 11 1344556666667899999999998753
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.39 E-value=4.3e-08 Score=104.70 Aligned_cols=155 Identities=19% Similarity=0.244 Sum_probs=84.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCC------cccccc-cc-------------------c-----cccCCe-e--EEEEEeC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA------TVLAED-RL-------------------F-----ATLDPT-T--RRVQMKN 358 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~------~~~~~~-~~-------------------~-----~Tld~t-t--r~i~l~~ 358 (536)
..|+++|++|+||||+++.|.+. .+...+ .+ + .+.++. . ..+...+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 46999999999999999999763 111000 00 0 011110 0 0010114
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCC-C-EEEEEEcCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSI-P-KLMIWNKVDK 436 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~-p-iIvVlNKiDl 436 (536)
+.+++++||||.... ...+...... +..+..+|.+++|+|+..+.. .... ...++. .. | ..+|+||+|.
T Consensus 180 ~~D~vIIDT~G~~~~-~~~l~~~l~~-i~~~~~~d~vllVvda~~g~~--~~~~----~~~~~~-~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE-EKGLLEEMKQ-IKEITNPDEIILVIDGTIGQQ--AGIQ----AKAFKE-AVGEIGSIIVTKLDG 250 (432)
T ss_dssp SCSEEEEECCCSCSS-HHHHHHHHHH-TTSSSCCSEEEEEEEGGGGGG--HHHH----HHHHHT-TSCSCEEEEEECSSS
T ss_pred CCCEEEEcCCCCccc-cHHHHHHHHH-HHHHhcCcceeEEeeccccHH--HHHH----HHHHhh-cccCCeEEEEeCCCC
Confidence 668999999998542 1122222211 122336899999999876532 1121 222221 34 5 7899999998
Q ss_pred CCChh-HHHHHhccCCC------------------EEEEeccCCCC-HHHHHHHHHHHhc
Q 009371 437 VCDPQ-KVKLEAQKRED------------------VVCISALSGNG-LDEFCSAVQEKLK 476 (536)
Q Consensus 437 ~~~~~-~~~~~~~~~~~------------------~v~vSAktg~G-IdeL~~~I~~~l~ 476 (536)
..... ..........| ..++|+..|.| +..|++.+.+.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~ 310 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD 310 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 65432 22222222222 34568888888 7777776655544
No 218
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.31 E-value=7.3e-07 Score=90.42 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=66.6
Q ss_pred eeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 360 GEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 360 ~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
..+.+|||---...+. ...+.++|++++|+|++++. +..... .++..+...++|+++|+||+|+.+
T Consensus 63 ~~~~iwD~qer~~~l~----------~~~~~~ad~vilV~D~~~~~~s~~~l~---~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 63 GSGVIENVLHRKNLLT----------KPHVANVDQVILVVTVKMPETSTYIID---KFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SSEEEEEECCCSCEET----------TTTEESCCEEEEEECSSTTCCCHHHHH---HHHHHHHHTTCEEEEEECCGGGCC
T ss_pred CeEEEEEEccccceee----------ccccccCCEEEEEEeCCCCCCCHHHHH---HHHHHHHHCCCCEEEEEeHHHcCC
Confidence 3788999911111111 12468899999999999875 444333 333333335789999999999976
Q ss_pred Chh---HHHHHhccC--CCEEEEeccCCCCHHHHHHHHH
Q 009371 439 DPQ---KVKLEAQKR--EDVVCISALSGNGLDEFCSAVQ 472 (536)
Q Consensus 439 ~~~---~~~~~~~~~--~~~v~vSAktg~GIdeL~~~I~ 472 (536)
... ......... .+++++||++|.|+++++..+.
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 432 111111122 6899999999999999998875
No 219
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.28 E-value=3.9e-07 Score=92.53 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=59.3
Q ss_pred HHHhccceEEEEeCCCcc-hHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HH---HHHhccCCCEEEEeccC
Q 009371 388 EISESSLLVHVVDISHPL-AEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KV---KLEAQKREDVVCISALS 460 (536)
Q Consensus 388 ei~~aDliLlVvD~s~~~-~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~---~~~~~~~~~~v~vSAkt 460 (536)
.+.++|++++|+|++++. +...+ .+++..+...++|.++|+||+|+.+... .. ......+.+++++||++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l---~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~ 152 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLL---DNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKT 152 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHH---HHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHH---HHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCC
Confidence 468899999999999875 44433 3444433335789999999999986531 11 11122356899999999
Q ss_pred CCCHHHHHHHHH
Q 009371 461 GNGLDEFCSAVQ 472 (536)
Q Consensus 461 g~GIdeL~~~I~ 472 (536)
|.|+++|++.+.
T Consensus 153 g~gi~~L~~~l~ 164 (302)
T 2yv5_A 153 GEGIDELVDYLE 164 (302)
T ss_dssp CTTHHHHHHHTT
T ss_pred CCCHHHHHhhcc
Confidence 999999998875
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.27 E-value=3.1e-06 Score=88.32 Aligned_cols=114 Identities=26% Similarity=0.288 Sum_probs=72.0
Q ss_pred HHHHHhHHHHHh-ccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HHHH-----HhccC
Q 009371 380 AAFRATLEEISE-SSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KVKL-----EAQKR 450 (536)
Q Consensus 380 e~f~~tl~ei~~-aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~~~-----~~~~~ 450 (536)
+.|.+++.++.. +|++++|+|++++.. .+...+..+ ..++|+++|+||+|+.+... .... ....+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~-----~~~~~l~~~-~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNG-----SWLPGLHRF-VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHH-----HCCTTHHHH-SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcc-----cHHHHHHHH-hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 567887777664 559999999987531 111122222 13789999999999976531 1111 11122
Q ss_pred C---CEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHH
Q 009371 451 E---DVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQ 499 (536)
Q Consensus 451 ~---~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~ 499 (536)
. +++++||++|.|+++|++.|.+......+.+-=..-.....+++.+..
T Consensus 131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~ 182 (368)
T 3h2y_A 131 LKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIK 182 (368)
T ss_dssp CCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHH
T ss_pred CCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHh
Confidence 3 789999999999999999998877654332211111234556666654
No 221
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.26 E-value=6.3e-07 Score=94.72 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=73.4
Q ss_pred EEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhccceEEEEeCCC----------cchHHHH-HHHHHHHhhc
Q 009371 353 RVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESSLLVHVVDISH----------PLAEQQI-EAVDKVLSEL 420 (536)
Q Consensus 353 ~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aDliLlVvD~s~----------~~~~~~~-~~v~~vL~~l 420 (536)
.+.+ ++..+.+|||+|..+ ++. ....+..++++|+|+|+++ ....... ..+..++..-
T Consensus 211 ~~~~-~~v~l~iwDtaGQe~---------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 211 KFQV-DKVNFHMFDVGGQRD---------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp EEEE-TTEEEEEEEECCSGG---------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred Eeec-CCccceecccchhhh---------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 3444 678899999999832 222 2334678999999999998 4433322 2223333322
Q ss_pred CCCCCCEEEEEEcCCCCCCh----------------------------------hHHHHH-----hc---------cCCC
Q 009371 421 DVSSIPKLMIWNKVDKVCDP----------------------------------QKVKLE-----AQ---------KRED 452 (536)
Q Consensus 421 ~~~~~piIvVlNKiDl~~~~----------------------------------~~~~~~-----~~---------~~~~ 452 (536)
...+.|+|+|+||+|+.... +..... .. ....
T Consensus 281 ~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~ 360 (402)
T 1azs_C 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCY 360 (402)
T ss_dssp TCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEE
T ss_pred cCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccE
Confidence 33578999999999973210 000000 00 1234
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhcc
Q 009371 453 VVCISALSGNGLDEFCSAVQEKLKD 477 (536)
Q Consensus 453 ~v~vSAktg~GIdeL~~~I~~~l~~ 477 (536)
++++||+++.||+++|.++.+.+..
T Consensus 361 ~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 361 PHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCcCHHHHHHHHHHHHHH
Confidence 6689999999999999999887653
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.24 E-value=2.7e-06 Score=88.76 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=74.0
Q ss_pred HHHHHhHHHH-HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh---hHHHH-----HhccC
Q 009371 380 AAFRATLEEI-SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP---QKVKL-----EAQKR 450 (536)
Q Consensus 380 e~f~~tl~ei-~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~---~~~~~-----~~~~~ 450 (536)
+.|.+++.++ ..++++++|+|++++.... ...+.+. + .++|+++|+||+|+.+.. +.... ....+
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-~~~l~~~---l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g 132 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSF-IPGLPRF---A--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG 132 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-CSSHHHH---C--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCCch-hhHHHHH---h--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC
Confidence 4678888777 6778999999999876311 1111222 2 378999999999998653 11111 11222
Q ss_pred ---CCEEEEeccCCCCHHHHHHHHHHHhcccceEEEEeecCChhHHHHHHHHh
Q 009371 451 ---EDVVCISALSGNGLDEFCSAVQEKLKDSMVWVEALVPFDKGELLSTIHQV 500 (536)
Q Consensus 451 ---~~~v~vSAktg~GIdeL~~~I~~~l~~~~~~~~~~ip~~~~~l~~~i~~~ 500 (536)
.+++++||++|.|+++|++.|.+......+.+-=..-.....+++.+...
T Consensus 133 ~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 133 LCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp CCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhh
Confidence 36899999999999999999998776543322110112345667766554
No 223
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.21 E-value=1.2e-06 Score=90.09 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=75.2
Q ss_pred EEEEeCCeeEEEeecccccccchhhHHHHHHH-hHHHHHhccceEEEEeCC----------Ccch-HHHHHHHHHHHhhc
Q 009371 353 RVQMKNGGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESSLLVHVVDIS----------HPLA-EQQIEAVDKVLSEL 420 (536)
Q Consensus 353 ~i~l~~g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aDliLlVvD~s----------~~~~-~~~~~~v~~vL~~l 420 (536)
.+.+ ++..+.+|||+|. +.+++ ...++..++++++|+|++ +... .+....+..++..-
T Consensus 161 ~~~~-~~v~l~iwDtgGQ---------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 161 PFDL-QSVIFRMVDVGGQ---------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp EEEE-TTEEEEEEEECCS---------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred EEEe-eceeeEEEEcCCc---------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 3444 6778999999998 33443 334567899999999776 2222 22333444444443
Q ss_pred CCCCCCEEEEEEcCCCCCCh--------------------hHHHHH-----------hccCCCEEEEeccCCCCHHHHHH
Q 009371 421 DVSSIPKLMIWNKVDKVCDP--------------------QKVKLE-----------AQKREDVVCISALSGNGLDEFCS 469 (536)
Q Consensus 421 ~~~~~piIvVlNKiDl~~~~--------------------~~~~~~-----------~~~~~~~v~vSAktg~GIdeL~~ 469 (536)
...+.|+++++||+|+.... +..... ......++++||+++.||+.++.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 44678999999999975311 111111 01223467899999999999999
Q ss_pred HHHHHhcc
Q 009371 470 AVQEKLKD 477 (536)
Q Consensus 470 ~I~~~l~~ 477 (536)
.+.+.+..
T Consensus 311 ~v~~~Il~ 318 (327)
T 3ohm_A 311 AVKDTILQ 318 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.17 E-value=1.3e-06 Score=93.08 Aligned_cols=145 Identities=19% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCEEEEEccCCCChHHHHHhhh------CCcccccc----ccc--------cc-cCCeeE------E--------EE-E-
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLT------GATVLAED----RLF--------AT-LDPTTR------R--------VQ-M- 356 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~------g~~~~~~~----~~~--------~T-ld~ttr------~--------i~-l- 356 (536)
...|+++|++||||||++..|. |..+...+ ++. .. ...... . +. .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 3478999999999999999997 33221100 000 00 000000 0 00 0
Q ss_pred eCCeeEEEeecccccc--cchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcC
Q 009371 357 KNGGEFLLTDTVGFIQ--KLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKV 434 (536)
Q Consensus 357 ~~g~~i~LiDTpG~i~--~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKi 434 (536)
..+..++++||||... ..+ .+......... ....|.+++|+|+...... ...+..+-+.+ .+..+|+||+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~-~lm~el~~i~~-~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~----~~~gVIlTKl 248 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEET-KLLEEMKEMYD-VLKPDDVILVIDASIGQKA--YDLASRFHQAS----PIGSVIITKM 248 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTT-HHHHHHHHHHH-HHCCSEEEEEEEGGGGGGG--HHHHHHHHHHC----SSEEEEEECG
T ss_pred hcCCCEEEEECCCCccccCCH-HHHHHHHHHHH-hhCCcceEEEEeCccchHH--HHHHHHHhccc----CCcEEEEecc
Confidence 1356899999999744 322 23333333322 3356899999999765322 12222222232 3578999999
Q ss_pred CCCCChhH-HHHHhccCCCEEEEeccCCCCHHH
Q 009371 435 DKVCDPQK-VKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 435 Dl~~~~~~-~~~~~~~~~~~v~vSAktg~GIde 466 (536)
|....... .........|+.+++. |+++++
T Consensus 249 D~~a~~G~als~~~~~g~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 249 DGTAKGGGALSAVVATGATIKFIGT--GEKIDE 279 (433)
T ss_dssp GGCSCHHHHHHHHHHHTCEEEEEEC--CSSSSC
T ss_pred cccccchHHHHHHHHHCCCEEEEEC--CCChHh
Confidence 98755332 2223334678888886 777654
No 225
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.13 E-value=5.9e-07 Score=93.50 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=67.6
Q ss_pred CeeEEEeecccccccchhhHHHHHHH-hHHHHHhccceEEEEeCC----------CcchHHH-HHHHHHHHhhcCCCCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRA-TLEEISESSLLVHVVDIS----------HPLAEQQ-IEAVDKVLSELDVSSIP 426 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~-tl~ei~~aDliLlVvD~s----------~~~~~~~-~~~v~~vL~~l~~~~~p 426 (536)
...+.+|||+|..+ ++. ....+..++++|+|+|++ +...... ...+..++..-...+.|
T Consensus 182 ~v~l~iwDtaGQe~---------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN---------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCSTT---------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCchh---------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 35788999999832 222 223457899999999997 3333222 22333333322235789
Q ss_pred EEEEEEcCCCCCCh-------------------------h-HHHHHhc----------------cCCCEEEEeccCCCCH
Q 009371 427 KLMIWNKVDKVCDP-------------------------Q-KVKLEAQ----------------KREDVVCISALSGNGL 464 (536)
Q Consensus 427 iIvVlNKiDl~~~~-------------------------~-~~~~~~~----------------~~~~~v~vSAktg~GI 464 (536)
+|+|+||+|+.... + ....... ....++++||++|.||
T Consensus 253 iiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV 332 (354)
T 2xtz_A 253 FMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLV 332 (354)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHH
T ss_pred EEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhH
Confidence 99999999973210 0 0001010 1123589999999999
Q ss_pred HHHHHHHHHHhc
Q 009371 465 DEFCSAVQEKLK 476 (536)
Q Consensus 465 deL~~~I~~~l~ 476 (536)
+++++++.+.+.
T Consensus 333 ~~vF~~v~~~I~ 344 (354)
T 2xtz_A 333 KKTFKLVDETLR 344 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988664
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.02 E-value=3.1e-05 Score=78.51 Aligned_cols=145 Identities=20% Similarity=0.233 Sum_probs=79.2
Q ss_pred CEEEEEccCCCChHHHHHhhhC------Ccccccccc-c---c-----------ccC---C-e---eE-----EEE-E-e
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG------ATVLAEDRL-F---A-----------TLD---P-T---TR-----RVQ-M-K 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g------~~~~~~~~~-~---~-----------Tld---~-t---tr-----~i~-l-~ 357 (536)
..++++|++|+||||+++.|.+ ..+...+.. + + .++ . . .. .+. . .
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~ 178 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS 178 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999973 222211100 0 0 000 0 0 00 000 0 1
Q ss_pred CCeeEEEeeccccccc-chhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCC
Q 009371 358 NGGEFLLTDTVGFIQK-LPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVD 435 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~-lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiD 435 (536)
++..++++||||.... ....+...... +..+..+|.+++|+|+.... .....+.. +.. ..| ..+|+||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKN-IYEAIKPDEVTLVIDASIGQ--KAYDLASK-FNQ----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHH-HHHHHCCSEEEEEEEGGGGG--GHHHHHHH-HHH----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHH-HHHHhcCCEEEEEeeCCchH--HHHHHHHH-HHh----hCCCCEEEEeCCC
Confidence 4568999999998541 11112221211 22345789999999987532 22222222 221 245 678999999
Q ss_pred CCCChhH-HHHHhccCCCEEEEeccCCCCHHHH
Q 009371 436 KVCDPQK-VKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 436 l~~~~~~-~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
....... .........|+.+++ +|+++++|
T Consensus 251 ~~~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAKGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred CCcchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 7654332 222334456888877 57777553
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.01 E-value=3e-06 Score=84.35 Aligned_cols=57 Identities=28% Similarity=0.305 Sum_probs=36.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc-cccccccccCCeeEEEEEeCCeeEEEeeccccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL-AEDRLFATLDPTTRRVQMKNGGEFLLTDTVGFIQK 373 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~-~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~i~~ 373 (536)
.+++++|.+|+|||||+|+|++.... ..+.+++|.... .+. -+..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~--~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFS--LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEE--CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEE--eCCCEEEEECCCcccC
Confidence 47999999999999999999987653 233333333221 122 2457889999999753
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.98 E-value=1.1e-06 Score=87.48 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=63.7
Q ss_pred hhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChhH---HHHHhccCC
Q 009371 375 PTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQK---VKLEAQKRE 451 (536)
Q Consensus 375 p~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~~---~~~~~~~~~ 451 (536)
|+++..+++.+...+..+|++++|+|+..+....... +. ++ ++|.++|+||+|+.+.... .......+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQGK 76 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence 3334456777888899999999999999886543211 11 11 7899999999999875321 111222345
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHh
Q 009371 452 DVVCISALSGNGLDEFCSAVQEKL 475 (536)
Q Consensus 452 ~~v~vSAktg~GIdeL~~~I~~~l 475 (536)
++ ++||++|.|+++|++.|.+.+
T Consensus 77 ~v-~iSa~~~~gi~~L~~~l~~~~ 99 (262)
T 3cnl_A 77 RV-ITTHKGEPRKVLLKKLSFDRL 99 (262)
T ss_dssp CE-EECCTTSCHHHHHHHHCCCTT
T ss_pred eE-EEECCCCcCHHHHHHHHHHhh
Confidence 77 999999999999998876554
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.92 E-value=1.7e-05 Score=81.65 Aligned_cols=145 Identities=18% Similarity=0.265 Sum_probs=79.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccc-cccccCCee--------------E-EEEE-------------------e
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDR-LFATLDPTT--------------R-RVQM-------------------K 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-~~~Tld~tt--------------r-~i~l-------------------~ 357 (536)
..++++|++|||||||++.|++........ .+...+... + .+.. .
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 479999999999999999998642111111 011111000 0 0000 1
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+..+.++||+|...... .+...+.. +......|-.++++|+.... +..+.+..+-+.++ ..++++||.|..
T Consensus 210 ~~~d~vliDtaG~~~~~~-~l~~eL~~-i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~----it~iilTKlD~~ 281 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETNR-NLMDEMKK-IARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVK----IDGIILTKLDAD 281 (328)
T ss_dssp HTCSEEEEEECCSCCTTT-CHHHHHHH-HHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSC----CCEEEEECGGGC
T ss_pred ccchhhHHhhccchhHHH-HHHHHHHH-HHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcC----CCEEEEeCcCCc
Confidence 234677899999854222 12222222 22234578899999976552 22222333322322 357889999975
Q ss_pred CChh-HHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 438 CDPQ-KVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 438 ~~~~-~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
.... .+........|+.+++ +|+++++|
T Consensus 282 a~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 282 ARGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp SCCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred cchhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 4322 2333334467888888 78777553
No 230
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.90 E-value=1.7e-05 Score=76.78 Aligned_cols=92 Identities=11% Similarity=-0.052 Sum_probs=61.4
Q ss_pred HHHHhccceEEEEeCCCcchHHHHHHH---HHHHhhc-CCCCCCEEEEEEcC-CCCCCh--hHHHHH-----hccCCCEE
Q 009371 387 EEISESSLLVHVVDISHPLAEQQIEAV---DKVLSEL-DVSSIPKLMIWNKV-DKVCDP--QKVKLE-----AQKREDVV 454 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~~~~~~~v---~~vL~~l-~~~~~piIvVlNKi-Dl~~~~--~~~~~~-----~~~~~~~v 454 (536)
.++..+|++|||||+++....+..+.+ ..++.+- ...+.|++++.||. |+.... ..+... ......+.
T Consensus 121 ~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq 200 (227)
T 3l82_B 121 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ 200 (227)
T ss_dssp HHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEE
T ss_pred HHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEE
Confidence 356789999999999876432233333 3444432 23578999999996 665432 111111 12334678
Q ss_pred EEeccCCCCHHHHHHHHHHHhccc
Q 009371 455 CISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
++||++|+|+.+-++||.+.+...
T Consensus 201 ~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 201 DTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EeECCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999887654
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.75 E-value=6.1e-05 Score=81.45 Aligned_cols=145 Identities=16% Similarity=0.207 Sum_probs=75.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcccccccc-ccccCCe-------------eE--EEEE-------------------e
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRL-FATLDPT-------------TR--RVQM-------------------K 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~-~~Tld~t-------------tr--~i~l-------------------~ 357 (536)
..++|+|++|||||||++.|+|......+.. +...+.. .+ .+.. .
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh
Confidence 3799999999999999999986421111110 0000100 00 0000 1
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHH-----hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS-----ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWN 432 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~-----~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlN 432 (536)
.+..++++||+|...... .+..........+. ..+-+++|+|++.+. ..+..+..+-..++ ...+|+|
T Consensus 374 ~~~DvVLIDTaGrl~~~~-~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~----itgvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKS-HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVG----LTGITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHH-HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTC----CSEEEEE
T ss_pred cCCCEEEEeCCCccchhh-hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcC----CCEEEEE
Confidence 356788999999854322 12222222222222 135678899987652 22233333333333 2357899
Q ss_pred cCCCCCChh-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 433 KVDKVCDPQ-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 433 KiDl~~~~~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
|+|-..... .+........|+.++. +|+++++
T Consensus 447 KLD~takgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp CGGGCSCCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred cCCCcccccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 999644322 2222333456777754 5777655
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.70 E-value=0.00011 Score=78.47 Aligned_cols=61 Identities=26% Similarity=0.260 Sum_probs=39.7
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCC---------------ccccccccccccCCeeEEEEEeC---------C--eeEEE
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGA---------------TVLAEDRLFATLDPTTRRVQMKN---------G--GEFLL 364 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~---------------~~~~~~~~~~Tld~ttr~i~l~~---------g--~~i~L 364 (536)
+...|+|+|++++|||||+|.|.|. ....-. ...|....+..+..+. | ..+++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 3457999999999999999999863 111000 1113444455554432 2 46899
Q ss_pred eecccccc
Q 009371 365 TDTVGFIQ 372 (536)
Q Consensus 365 iDTpG~i~ 372 (536)
+||+|+.+
T Consensus 145 lDTeG~~~ 152 (447)
T 3q5d_A 145 MDTQGTFD 152 (447)
T ss_dssp EEEECCCS
T ss_pred EcCCcccc
Confidence 99999854
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.62 E-value=4.1e-05 Score=77.52 Aligned_cols=140 Identities=20% Similarity=0.297 Sum_probs=71.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccc--cccccCCee--------------------E----E----EEEeCCeeE
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDR--LFATLDPTT--------------------R----R----VQMKNGGEF 362 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~--~~~Tld~tt--------------------r----~----i~l~~g~~i 362 (536)
..++++|++||||||++..|.+.-....+. .+.+.|+.. . . +....+.++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dl 185 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDH 185 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCE
Confidence 479999999999999999987432110010 011111100 0 0 000134579
Q ss_pred EEeecccccccchhhHHHHHHHhHHHHH--hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCCh
Q 009371 363 LLTDTVGFIQKLPTTLVAAFRATLEEIS--ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDP 440 (536)
Q Consensus 363 ~LiDTpG~i~~lp~~l~e~f~~tl~ei~--~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~ 440 (536)
+++||+|...... .....+ ...+. ..+.+++|+|+++.. .+ +.++.+.+...+ ..-+|+||.|.....
T Consensus 186 vIiDT~G~~~~~~-~~~~el---~~~l~~~~~~~~~lVl~at~~~--~~---~~~~~~~~~~l~-~~giVltk~D~~~~~ 255 (296)
T 2px0_A 186 VFVDTAGRNFKDP-QYIDEL---KETIPFESSIQSFLVLSATAKY--ED---MKHIVKRFSSVP-VNQYIFTKIDETTSL 255 (296)
T ss_dssp EEEECCCCCTTSH-HHHHHH---HHHSCCCTTEEEEEEEETTBCH--HH---HHHHTTTTSSSC-CCEEEEECTTTCSCC
T ss_pred EEEeCCCCChhhH-HHHHHH---HHHHhhcCCCeEEEEEECCCCH--HH---HHHHHHHHhcCC-CCEEEEeCCCcccch
Confidence 9999999843221 111111 11121 256778899987652 22 233444443222 234677999976543
Q ss_pred h-HHHHHhccCCCEEEEeccCCCCH
Q 009371 441 Q-KVKLEAQKREDVVCISALSGNGL 464 (536)
Q Consensus 441 ~-~~~~~~~~~~~~v~vSAktg~GI 464 (536)
. ..........|+.+++ .|+++
T Consensus 256 g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 256 GSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp HHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred hHHHHHHHHHCcCEEEEE--CCCCC
Confidence 2 2222223345555554 34444
No 234
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.00016 Score=73.16 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=61.1
Q ss_pred HHHHhccceEEEEeCCCcch---HHHHHHHHHHHhhc-CCCCCCEEEEEEc-CCCCCChh--HHHHHh-----ccCCCEE
Q 009371 387 EEISESSLLVHVVDISHPLA---EQQIEAVDKVLSEL-DVSSIPKLMIWNK-VDKVCDPQ--KVKLEA-----QKREDVV 454 (536)
Q Consensus 387 ~ei~~aDliLlVvD~s~~~~---~~~~~~v~~vL~~l-~~~~~piIvVlNK-iDl~~~~~--~~~~~~-----~~~~~~v 454 (536)
.++.++|++|+|||+++... ...+..+..++.+- ...+.|++|+.|| .|+..... .+.... .....+.
T Consensus 206 ~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq 285 (312)
T 3l2o_B 206 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ 285 (312)
T ss_dssp HHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEE
T ss_pred HHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEE
Confidence 34678999999999988653 22222233445332 2357899999997 57754321 111111 1234578
Q ss_pred EEeccCCCCHHHHHHHHHHHhccc
Q 009371 455 CISALSGNGLDEFCSAVQEKLKDS 478 (536)
Q Consensus 455 ~vSAktg~GIdeL~~~I~~~l~~~ 478 (536)
++||.+|+|+.+-++||.+.+...
T Consensus 286 ~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 286 DTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp EEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ecccCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999988754
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.60 E-value=0.00036 Score=70.90 Aligned_cols=145 Identities=19% Similarity=0.241 Sum_probs=74.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccc-cccccCCe-------------eEE--EEE-------------------e
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDR-LFATLDPT-------------TRR--VQM-------------------K 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-~~~Tld~t-------------tr~--i~l-------------------~ 357 (536)
..|+|+|++|||||||++.|.+........ .+...+.. ... +.. .
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999998532110000 00000000 000 000 1
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHH-----HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEI-----SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWN 432 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei-----~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlN 432 (536)
.+..+.++||+|........ ..........+ ...+.+++++|+..... ....+....+..+ ..++++|
T Consensus 183 ~~~d~~llDt~G~~~~~~~~-~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~----~t~iivT 255 (304)
T 1rj9_A 183 RGYDLLFVDTAGRLHTKHNL-MEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVG----LTGVIVT 255 (304)
T ss_dssp HTCSEEEECCCCCCTTCHHH-HHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHC----CSEEEEE
T ss_pred CCCCEEEecCCCCCCchHHH-HHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcC----CcEEEEE
Confidence 23457799999975432221 11121111111 23567888999876532 2223333333333 3578899
Q ss_pred cCCCCCChh-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 433 KVDKVCDPQ-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 433 KiDl~~~~~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
|.|...... .+........|+.+++ +|+++++
T Consensus 256 h~d~~a~gg~~l~i~~~~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 256 KLDGTAKGGVLIPIVRTLKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp CTTSSCCCTTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred CCcccccccHHHHHHHHHCCCeEEEe--CCCChhh
Confidence 999654322 2222223456777776 4655544
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.59 E-value=0.00011 Score=74.71 Aligned_cols=145 Identities=16% Similarity=0.236 Sum_probs=75.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccc-cccccCCe----------------eE-----------EE-----E--Ee
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDR-LFATLDPT----------------TR-----------RV-----Q--MK 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~-~~~Tld~t----------------tr-----------~i-----~--l~ 357 (536)
..++++|++|+||||++..|.+.-...... .+...|.. .. .+ . ..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~ 184 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA 184 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHh
Confidence 378999999999999999997531110000 00000100 00 00 0 11
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHH-----hccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEIS-----ESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWN 432 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~-----~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlN 432 (536)
.+..++++||||... ....+...+......+. ..|.+++|+|+... ......+....+.++ ..-+|+|
T Consensus 185 ~~~dvvIiDtpg~~~-~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~----i~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLH-TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVN----VTGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCS-CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSC----CCEEEEE
T ss_pred cCCCEEEEECCCchh-hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCC----CCEEEEe
Confidence 345789999999632 22222233333222221 36778999998733 233333333333322 2357889
Q ss_pred cCCCCCChh-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 433 KVDKVCDPQ-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 433 KiDl~~~~~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
|.|...... ..........|+.+++. |+++++
T Consensus 258 k~D~~~~gG~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 258 KLDGTAKGGITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp CGGGCSCTTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred CCCCccchHHHHHHHHHHCCCEEEEeC--CCChhh
Confidence 999755432 22233334567877764 555554
No 237
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.47 E-value=2.4e-05 Score=79.82 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=58.6
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh---HH----HHHhccCCCEEEEeccCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ---KV----KLEAQKREDVVCISALSG 461 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~---~~----~~~~~~~~~~v~vSAktg 461 (536)
+.++|.+++|+|+..|..... .+.++|......++|.++|+||+|+.+... .. ......+.+++++||++|
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH--HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 678999999999987754433 355555544445789999999999998743 11 112233568999999999
Q ss_pred CCHHHHHHHH
Q 009371 462 NGLDEFCSAV 471 (536)
Q Consensus 462 ~GIdeL~~~I 471 (536)
.|+++|++.+
T Consensus 162 ~g~~~L~~~~ 171 (307)
T 1t9h_A 162 DSLADIIPHF 171 (307)
T ss_dssp TTCTTTGGGG
T ss_pred CCHHHHHhhc
Confidence 9998877654
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.35 E-value=0.0016 Score=69.29 Aligned_cols=118 Identities=22% Similarity=0.293 Sum_probs=63.7
Q ss_pred CEEEEEccCCCChHHHHHhhh-------CCcccccccc-c--c------------ccC--C-ee----EE-----EE-E-
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT-------GATVLAEDRL-F--A------------TLD--P-TT----RR-----VQ-M- 356 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~-------g~~~~~~~~~-~--~------------Tld--~-tt----r~-----i~-l- 356 (536)
..|+++|.+|+||||+...|. |..+..-+-. + . .++ + .. .. +. .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~ 180 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999997 5433211000 0 0 000 0 00 00 00 0
Q ss_pred eCCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCC-EEEEEEcCC
Q 009371 357 KNGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIP-KLMIWNKVD 435 (536)
Q Consensus 357 ~~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~p-iIvVlNKiD 435 (536)
..+.+++|+||||...... .+..... ....+..+|.+++|+|+..... ....+.. +.. ..+ .-+|+||+|
T Consensus 181 ~~~~D~VIIDTpG~l~~~~-~l~~~L~-~~~~~~~p~~vllVvda~~g~~--~~~~~~~-f~~----~l~i~gvVlnK~D 251 (433)
T 2xxa_A 181 LKFYDVLLVDTAGRLHVDE-AMMDEIK-QVHASINPVETLFVVDAMTGQD--AANTAKA-FNE----ALPLTGVVLTKVD 251 (433)
T ss_dssp HTTCSEEEEECCCCCTTCH-HHHHHHH-HHHHHSCCSEEEEEEETTBCTT--HHHHHHH-HHH----HSCCCCEEEECTT
T ss_pred hCCCCEEEEECCCcccccH-HHHHHHH-HHHHhhcCcceeEEeecchhHH--HHHHHHH-Hhc----cCCCeEEEEecCC
Confidence 1456899999999753221 1222221 1233446789999999875522 2222222 221 123 347999999
Q ss_pred CCCC
Q 009371 436 KVCD 439 (536)
Q Consensus 436 l~~~ 439 (536)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7644
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.34 E-value=0.0012 Score=67.39 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=50.9
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHH-----HhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEI-----SESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWN 432 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei-----~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlN 432 (536)
.+..++|+||||...... .+..........+ ..+|.+++|+|+... ......+......+ ...=+|+|
T Consensus 190 ~~yD~VIIDTpg~l~~~~-~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~~~----~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKT-NLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSKVA----DVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHH-HHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTTTS----CCCEEEEE
T ss_pred cCCCEEEEcCCCcccccH-HHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhhcC----CCcEEEEe
Confidence 356899999999854221 1222222221111 136888999998743 33333333221111 12347899
Q ss_pred cCCCCCChh-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 433 KVDKVCDPQ-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 433 KiDl~~~~~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
|+|...... ..........|+.+++ .|+++++
T Consensus 263 k~d~~~~~g~~~~~~~~~~~Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 263 KMDSTSKGGIGLAIKELLNIPIKMIG--VGEKVDD 295 (320)
T ss_dssp CGGGCSCTTHHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred CCCCCCchhHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 999654322 2222223456666664 4555443
No 240
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.30 E-value=0.00072 Score=68.21 Aligned_cols=144 Identities=13% Similarity=0.144 Sum_probs=71.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc------cccccc----c-----cc------ccCCe-------eEEE-----E-E-e
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT------VLAEDR----L-----FA------TLDPT-------TRRV-----Q-M-K 357 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~------~~~~~~----~-----~~------Tld~t-------tr~i-----~-l-~ 357 (536)
..++++|++|+||||++..|++.- +...+. . +. .++.. ...+ . . .
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~ 178 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999987531 110000 0 00 00000 0000 0 0 1
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+.+++++||||.... .......+..... ...+|.+++|+|+... ....+.+......++ ..-+|+||+|..
T Consensus 179 ~~~D~viiDtpp~~~~-d~~~~~~l~~~~~-~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~----i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI-DEPLMGELARLKE-VLGPDEVLLVLDAMTG--QEALSVARAFDEKVG----VTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSC-CHHHHHHHHHHHH-HHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTC----CCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccc-cHHHHHHHHHHhh-hcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCC----CCEEEEECCCCC
Confidence 3567999999987543 2222233322222 2357888899998643 233333332222221 245789999975
Q ss_pred CChh-HHHHHhccCCCEEEEeccCCCCHHH
Q 009371 438 CDPQ-KVKLEAQKREDVVCISALSGNGLDE 466 (536)
Q Consensus 438 ~~~~-~~~~~~~~~~~~v~vSAktg~GIde 466 (536)
.... ..........|+.+++ +|+++++
T Consensus 251 ~~~g~~~~~~~~~~~pi~~i~--~g~~~~d 278 (295)
T 1ls1_A 251 ARGGAALSARHVTGKPIYFAG--VSEKPEG 278 (295)
T ss_dssp SSCHHHHHHHHHHCCCEEEEC--------C
T ss_pred ccHHHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 4322 2222333456777765 3555543
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.15 E-value=6.3e-05 Score=76.69 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
.++|+|++|||||||+|+|+|...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHhccccc
Confidence 699999999999999999998643
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.14 E-value=0.0014 Score=69.54 Aligned_cols=100 Identities=12% Similarity=0.172 Sum_probs=53.7
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
.+..++++||||..... ..+...... +..+..+|.+++|+|+... ......+...-..++ ..-+|+||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d-~~l~~el~~-i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~----i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID-EPLMGELAR-LKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVG----VTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCC-HHHHHHHHH-HHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTC----CCEEEEESGGGC
T ss_pred CCCCEEEEcCCCccccc-HHHHHHHHH-hhhccCCceEEEEEeccch--HHHHHHHHHHHhcCC----ceEEEEeCcCCc
Confidence 45679999999975432 112222211 2223468889999998654 222222222222221 246789999975
Q ss_pred CChh-HHHHHhccCCCEEEEeccCCCCHHHH
Q 009371 438 CDPQ-KVKLEAQKREDVVCISALSGNGLDEF 467 (536)
Q Consensus 438 ~~~~-~~~~~~~~~~~~v~vSAktg~GIdeL 467 (536)
.... ..........|+.+++ .|+.+++|
T Consensus 251 ~~~g~alsi~~~~g~PI~flg--~Ge~~~dl 279 (425)
T 2ffh_A 251 ARGGAALSARHVTGKPIYFAG--VSEKPEGL 279 (425)
T ss_dssp SSCHHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred ccHHHHHHHHHHHCCCEEEEe--CCCChhhc
Confidence 4332 2222233456777776 45555543
No 243
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.14 E-value=0.00026 Score=73.61 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=53.0
Q ss_pred HHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCCChh------HHHHHhccCCCEEEEeccCCC
Q 009371 389 ISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVCDPQ------KVKLEAQKREDVVCISALSGN 462 (536)
Q Consensus 389 i~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~~~~------~~~~~~~~~~~~v~vSAktg~ 462 (536)
+.++|.+++| |+..|..... .+.++|......++|.++|+||+|+.+... ........+.+++++||++|.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~--~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~ 204 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLN--IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQD 204 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHH--HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTB
T ss_pred HhcCCEEEEE-EeCCCCCCHH--HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCc
Confidence 4678988876 5545543221 344444332223678899999999987543 112222345789999999999
Q ss_pred CHHHHHHHH
Q 009371 463 GLDEFCSAV 471 (536)
Q Consensus 463 GIdeL~~~I 471 (536)
|+++|...+
T Consensus 205 gl~~L~~~~ 213 (358)
T 2rcn_A 205 GLKPLEEAL 213 (358)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHHhc
Confidence 999988764
No 244
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.07 E-value=0.00046 Score=67.33 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=28.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
..++|+|++|||||||++.|+|. ..++.+.+.+ +|.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~-~g~ 67 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYI-DNI 67 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEE-TTE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEE-CCE
Confidence 36999999999999999999986 3455666665 443
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.06 E-value=0.00052 Score=69.42 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
.++++|++|||||||+|+|+ ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 58999999999999999999 543
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.99 E-value=0.00057 Score=66.09 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.98 E-value=0.0004 Score=72.20 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=22.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
.++|+|++|||||||+|+|+|...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 599999999999999999998754
No 248
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.95 E-value=0.00064 Score=68.03 Aligned_cols=36 Identities=31% Similarity=0.606 Sum_probs=28.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCee
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGE 361 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~ 361 (536)
.++|+|++|||||||++.|+|. +.++.+.+.+ +|..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~-~G~~ 71 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILF-DNKP 71 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEE-TTEE
T ss_pred EEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEE-CCEE
Confidence 6999999999999999999986 3445666666 5544
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.93 E-value=0.00071 Score=66.27 Aligned_cols=36 Identities=36% Similarity=0.606 Sum_probs=28.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
..++|+|++|||||||++.|+|. ..++.+.+.+ +|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~-~g~ 60 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRL-NGA 60 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEE-TTE
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEE-CCE
Confidence 46999999999999999999986 2345566665 443
No 250
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.92 E-value=0.00072 Score=66.74 Aligned_cols=35 Identities=37% Similarity=0.546 Sum_probs=27.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
.++|+|++|||||||++.|+|. +.++.+.+.+ +|.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~-~g~ 69 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYF-ENK 69 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEE-TTE
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEE-CCE
Confidence 6999999999999999999986 2345566665 443
No 251
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.92 E-value=0.00072 Score=67.03 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 252
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.89 E-value=0.0008 Score=65.76 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 253
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.88 E-value=0.00053 Score=69.20 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL 338 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~ 338 (536)
.++++|++|||||||+|+|.|....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 5899999999999999999987543
No 254
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.84 E-value=0.00066 Score=67.55 Aligned_cols=22 Identities=55% Similarity=0.762 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6999999999999999999986
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.84 E-value=0.00086 Score=66.67 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6999999999999999999986
No 256
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.83 E-value=0.00084 Score=65.98 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 257
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.76 E-value=0.0012 Score=63.69 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.8
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999986
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.76 E-value=0.001 Score=66.28 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 259
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.75 E-value=0.0011 Score=66.56 Aligned_cols=36 Identities=36% Similarity=0.368 Sum_probs=28.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCee
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGGE 361 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~~ 361 (536)
.++|+|++|||||||++.|+|. +.++.+.+.+ +|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~-~g~~ 84 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNL-FGKM 84 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEE-TTBC
T ss_pred EEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEE-CCEE
Confidence 6999999999999999999986 3345566665 4543
No 260
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.75 E-value=0.0013 Score=64.98 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 261
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.75 E-value=0.0012 Score=65.54 Aligned_cols=35 Identities=37% Similarity=0.618 Sum_probs=27.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
.++|+|++|||||||++.|+|. ..++.+.+.+ +|.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~-~g~ 69 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLY-DGE 69 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEE-TTE
T ss_pred EEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEE-CCE
Confidence 6999999999999999999986 2345566665 443
No 262
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.72 E-value=0.00083 Score=65.69 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999863
No 263
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.70 E-value=0.00045 Score=65.93 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=34.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc--ccccccccccCCeeEEEEEeCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV--LAEDRLFATLDPTTRRVQMKNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~--~~~~~~~~Tld~ttr~i~l~~g~~i~LiDTpG~ 370 (536)
..|+|+|++|||||||+++|.+... .......+|.++..+. .+|..+.++|+..|
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE---~~G~~y~fvs~~~f 76 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE---EDGKEYHFISTEEM 76 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC---CTTSSCEECCHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe---eccccceeccHHHh
Confidence 4799999999999999999986432 1111122233332222 25667777777665
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.69 E-value=0.002 Score=62.40 Aligned_cols=32 Identities=31% Similarity=0.657 Sum_probs=27.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM 356 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l 356 (536)
.++|+|++|||||||++.|+|. ..++.+.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~ 67 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKH 67 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEE
Confidence 6999999999999999999986 3455677766
No 265
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.67 E-value=0.0021 Score=59.80 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=44.0
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcC--CCCCCEEEEEEcCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELD--VSSIPKLMIWNKVDK 436 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~--~~~~piIvVlNKiDl 436 (536)
..+++++|||+.... .+...+..+|.+++++..+... .....+.+.+..++ ..+.++.+|+|++|.
T Consensus 75 ~yD~viiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV----------ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSSSH----------HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCEEEEECCCCCCH----------HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 457899999987421 1223346699999999887654 44444555565554 234577899999984
No 266
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.65 E-value=0.00096 Score=67.85 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=28.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
.++|+|++|||||||++.|+|. ++++.+.+.+ +|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i-~G~ 116 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRI-DGQ 116 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEE-TTE
T ss_pred EEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEE-CCE
Confidence 7999999999999999999986 3455666665 443
No 267
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.64 E-value=0.0018 Score=63.84 Aligned_cols=22 Identities=55% Similarity=0.835 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999986
No 268
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.63 E-value=0.0015 Score=68.03 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||+++|+|.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 6999999999999999999986
No 269
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.63 E-value=0.0017 Score=67.39 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 6999999999999999999996
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.61 E-value=0.0014 Score=64.01 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999986
No 271
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.48 E-value=0.0028 Score=66.19 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 69999999999999999999963
No 272
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.46 E-value=0.0023 Score=67.08 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 69999999999999999999963
No 273
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.44 E-value=0.0024 Score=66.38 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 69999999999999999999963
No 274
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.44 E-value=0.0024 Score=66.26 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999963
No 275
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.41 E-value=0.0025 Score=66.27 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 69999999999999999999963
No 276
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.39 E-value=0.029 Score=54.92 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.+.|.|++|+|||+|++++..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999975
No 277
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.39 E-value=0.0031 Score=62.64 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 278
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.39 E-value=0.0013 Score=62.18 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 69999999999999999999853
No 279
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.36 E-value=0.0027 Score=62.77 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6999999999999999999985
No 280
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.36 E-value=0.0028 Score=66.13 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 69999999999999999999963
No 281
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.35 E-value=0.0014 Score=61.05 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 282
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.31 E-value=0.0023 Score=66.30 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999996
No 283
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.31 E-value=0.0013 Score=61.93 Aligned_cols=22 Identities=50% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|++.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 284
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.28 E-value=0.0024 Score=66.10 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 6999999999999999999996
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.26 E-value=0.0017 Score=60.49 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||++.|++.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36999999999999999999875
No 286
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.24 E-value=0.019 Score=61.36 Aligned_cols=63 Identities=27% Similarity=0.299 Sum_probs=38.9
Q ss_pred CCCEEEEEccCCCChHHHHHhhh-------CCcccc----ccccc---cccCCeeEEEEEe---------CC--eeEEEe
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLT-------GATVLA----EDRLF---ATLDPTTRRVQMK---------NG--GEFLLT 365 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~-------g~~~~~----~~~~~---~Tld~ttr~i~l~---------~g--~~i~Li 365 (536)
++.+|+|+|..++|||+|+|.|+ +..... ....| .+..+.|..+.++ +| ..++++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 45689999999999999999664 111100 01112 2445555544432 33 358899
Q ss_pred eccccccc
Q 009371 366 DTVGFIQK 373 (536)
Q Consensus 366 DTpG~i~~ 373 (536)
||.|+.+.
T Consensus 146 DTEG~~d~ 153 (457)
T 4ido_A 146 DTQGTFDS 153 (457)
T ss_dssp EECCBTCT
T ss_pred eccCCCCc
Confidence 99998643
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.24 E-value=0.0018 Score=59.89 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999874
No 288
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.22 E-value=0.0034 Score=61.85 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 289
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.20 E-value=0.023 Score=56.36 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
++++|++|+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 290
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.19 E-value=0.0031 Score=63.53 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7999999999999999999986
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.13 E-value=0.0019 Score=59.97 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999875
No 292
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.053 Score=57.69 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-|.+.||||+|||+|.+++++.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999863
No 293
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.06 E-value=0.0025 Score=58.36 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++++|++|||||||++.|+|..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 69999999999999999999864
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.06 E-value=0.0029 Score=58.30 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|++.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999985
No 295
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.04 E-value=0.0021 Score=61.47 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999999853
No 296
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.01 E-value=0.0031 Score=61.93 Aligned_cols=22 Identities=50% Similarity=0.581 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 297
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.01 E-value=0.0025 Score=60.22 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=21.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.97 E-value=0.0032 Score=62.46 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999995
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.94 E-value=0.0029 Score=61.00 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
..++|+|++|||||||++.|+|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 369999999999999999999853
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.94 E-value=0.0035 Score=57.47 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++++|++|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 689999999999999998664
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.94 E-value=0.0025 Score=60.96 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=20.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999986
No 302
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.76 E-value=0.0064 Score=66.87 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=28.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
.++++|++|||||||++.|+|. .+++.+.+.+ +|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~-~g~ 405 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF-----------YDIDEGHILM-DGH 405 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEE-TTE
T ss_pred EEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEE-CCE
Confidence 7999999999999999999986 3455666665 443
No 303
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.072 Score=56.47 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-|.+.||||+|||+|.+++++.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 304
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.72 E-value=0.0055 Score=67.35 Aligned_cols=35 Identities=34% Similarity=0.572 Sum_probs=28.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
.++++|++|||||||++.|+|. .+++.+.+.+ +|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~-~g~ 403 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILI-DGH 403 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEE-TTE
T ss_pred EEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEE-CCE
Confidence 7999999999999999999986 4556677766 554
No 305
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.72 E-value=0.004 Score=58.45 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
No 306
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.69 E-value=0.0065 Score=66.78 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++++|++|||||||++.|+|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999986
No 307
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.68 E-value=0.0061 Score=67.19 Aligned_cols=35 Identities=37% Similarity=0.616 Sum_probs=28.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
.++++|++|||||||++.|+|. .+++.+.+.+ +|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~-~g~ 406 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISL-DGH 406 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEE-TTE
T ss_pred EEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEE-CCE
Confidence 7999999999999999999986 3455666665 443
No 308
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.65 E-value=0.0068 Score=66.94 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=28.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
.++++|++|||||||++.|+|. .+++.+.+.+ +|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~-~g~ 417 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILV-DGI 417 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEE-TTE
T ss_pred EEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEE-CCE
Confidence 7999999999999999999986 3556666666 554
No 309
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.64 E-value=0.014 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|+|||||++++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 310
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.62 E-value=0.017 Score=59.09 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCC
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
....|+|+|++|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999764
No 311
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.60 E-value=0.0047 Score=61.12 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|++.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6999999999999999999875
No 312
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.11 Score=54.75 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
|.+.||||+|||+|.+++++.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHh
Confidence 899999999999999999863
No 313
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.58 E-value=0.0073 Score=63.41 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 69999999999999999999863
No 314
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.55 E-value=0.26 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.-|.|.|++|+|||+|.+++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999999853
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.51 E-value=0.0056 Score=56.48 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 316
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.50 E-value=0.0078 Score=66.33 Aligned_cols=34 Identities=38% Similarity=0.667 Sum_probs=27.6
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNG 359 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g 359 (536)
.++++|++|||||||++.|+|. .+++.+.+.+ +|
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i-~g 404 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEV-DE 404 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEE-SS
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEE-CC
Confidence 7999999999999999999986 3455666665 44
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.50 E-value=0.0045 Score=59.24 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=15.8
Q ss_pred CEEEEEccCCCChHHHHHhhh-CC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT-GA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~-g~ 335 (536)
..++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 369999999999999999999 75
No 318
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.48 E-value=0.0058 Score=57.77 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||++.|++.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46999999999999999999875
No 319
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.47 E-value=0.008 Score=62.18 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||+++|++.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999999985
No 320
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.45 E-value=0.0073 Score=61.78 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.6
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||+++|+|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999985
No 321
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.42 E-value=0.0065 Score=56.44 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 369999999999999999998753
No 322
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.096 Score=55.57 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-|.+.|+||+|||+|.+++++.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 4999999999999999999864
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.38 E-value=0.0062 Score=57.40 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.4
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999873
No 324
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.37 E-value=0.0062 Score=61.83 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6999999999999999999874
No 325
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.36 E-value=0.0056 Score=57.62 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999875
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.29 E-value=0.0085 Score=57.96 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.6
Q ss_pred CEEEEEccCCCChHHHHHhhh---CCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT---GAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~---g~~ 336 (536)
..|+|+|++|||||||++.|+ |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 479999999999999999999 753
No 327
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.29 E-value=0.0083 Score=57.28 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++|+|++|||||||++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999999983
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.28 E-value=0.0073 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999763
No 329
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.25 E-value=0.0066 Score=54.86 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.|+|+|++|||||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999863
No 330
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.19 E-value=0.073 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.7
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..+.|.|++|+|||+|.+++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 331
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.17 E-value=0.019 Score=54.37 Aligned_cols=66 Identities=11% Similarity=-0.056 Sum_probs=41.3
Q ss_pred CeeEEEeecccc-cccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 359 GGEFLLTDTVGF-IQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 359 g~~i~LiDTpG~-i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
..+++++|||+. .... +...+..+|.+++++..+... ......+.+.+..+. +.++.+|+|++|..
T Consensus 67 ~yD~viiD~p~~~~~~~----------~~~~l~~aD~viiv~~~~~~~-~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDED----------LEALADGCDLLVIPSTPDALA-LDALMLTIETLQKLG--NNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSSH----------HHHHHHTSSEEEEEECSSHHH-HHHHHHHHHHHHHTC--SSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcHH----------HHHHHHHCCEEEEEecCCchh-HHHHHHHHHHHHhcc--CCCEEEEEEecCCc
Confidence 457899999986 3321 122346799999998765432 223333334444433 56788999999854
No 332
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.17 E-value=0.0046 Score=57.39 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 333
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.15 E-value=0.0079 Score=61.10 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||++.|.|.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 47999999999999999999875
No 334
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.039 Score=58.68 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.1
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-|.+.||||+|||+|.+++++.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999863
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.03 E-value=0.0094 Score=57.75 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999873
No 336
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.00 E-value=0.018 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.3
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++++|++|+|||||++++++.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 337
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.99 E-value=0.011 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.751 Sum_probs=21.6
Q ss_pred CCEEEEEccCCCChHHHHHhhhCC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.+.++|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 467999999999999999999864
No 338
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.90 E-value=0.011 Score=53.61 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 339
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.89 E-value=0.011 Score=55.26 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 340
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.83 E-value=0.0091 Score=60.54 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=22.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
++.++|+|++|||||||+|.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 578999999999999999999975
No 341
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.83 E-value=0.014 Score=51.89 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.7
Q ss_pred CEEEEEccCCCChHHHHHhh
Q 009371 313 PVVSLVGYTNAGKSTLLNRL 332 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL 332 (536)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.82 E-value=0.011 Score=61.24 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999874
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.80 E-value=0.039 Score=55.54 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 344
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.79 E-value=0.015 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.7
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 345
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.78 E-value=0.13 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|.|.|++|+|||+|.+++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999975
No 346
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.75 E-value=0.15 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
+.+.|.|++|+|||||+++|.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999987
No 347
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.75 E-value=0.013 Score=63.89 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHhhhCCc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.++|+|++|||||||++.|+|..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999964
No 348
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.75 E-value=0.012 Score=70.82 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=28.1
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEEeCCe
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQMKNGG 360 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l~~g~ 360 (536)
+|+|||++|||||||++.|.+. .+++.+.+.+ ||.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~i-DG~ 1141 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFI-DGS 1141 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEE-TTE
T ss_pred EEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEE-CCE
Confidence 7999999999999999999985 4555566665 553
No 349
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.74 E-value=0.013 Score=55.34 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.2
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 350
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.74 E-value=0.031 Score=55.67 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=39.0
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCC-CCCCEE-EEEEcCCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDV-SSIPKL-MIWNKVDK 436 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~-~~~piI-vVlNKiDl 436 (536)
+..++++|||+...... +...+..+|.+++|+..+.. .......+.+.+..++. .+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~~---------~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG---------FAAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG---------GGGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH---------HHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999987643211 11124678999999875432 22333333444444332 344554 89999983
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.67 E-value=0.011 Score=60.97 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
+++|+|++|||||||++.|+|.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999985
No 352
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.67 E-value=0.014 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999986
No 353
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.66 E-value=0.36 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..+.|.|++|+|||+|..++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999975
No 354
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.66 E-value=0.022 Score=62.23 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=22.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
-.++|+|++|||||||++.|+|...
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3699999999999999999999643
No 355
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.64 E-value=0.11 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..+.|.|++|+|||||++++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 356
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.62 E-value=0.14 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.|.|.|++|+|||+|++++.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999863
No 357
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.073 Score=56.95 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-|.+.|+||+|||+|.+++++.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 4899999999999999999863
No 358
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.61 E-value=0.018 Score=62.42 Aligned_cols=21 Identities=38% Similarity=0.426 Sum_probs=20.1
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
++|+|+||||||||+++|++.
T Consensus 263 i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 899999999999999999985
No 359
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.61 E-value=0.017 Score=53.86 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.|+|+|++||||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999873
No 360
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.60 E-value=0.014 Score=59.08 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++++|++|||||||++.|+|.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999864
No 361
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.59 E-value=0.016 Score=63.35 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
-.++|+|++|||||||++.|+|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999964
No 362
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.53 E-value=0.017 Score=52.65 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
..+|+|++|||||||+.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 363
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.53 E-value=0.016 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999753
No 364
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.52 E-value=0.02 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=21.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|.|++|||||||++.|.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999874
No 365
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.50 E-value=0.015 Score=60.55 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||+++|++.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999874
No 366
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.40 E-value=0.086 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
+.+.|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999853
No 367
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.38 E-value=0.25 Score=53.21 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|.|.|++|+|||+|.+++..
T Consensus 240 ~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 368
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.38 E-value=0.014 Score=62.41 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|.++|.+||||||+.+.|..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 369
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.33 E-value=0.2 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-|.|.|++|+|||+|.+++...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999753
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.33 E-value=0.025 Score=55.19 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.6
Q ss_pred CEEEEEccCCCChHHHHHhhh---CCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT---GAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~---g~~ 336 (536)
..|+|+|++||||||+++.|. |..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 479999999999999999998 653
No 371
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.024 Score=62.86 Aligned_cols=25 Identities=44% Similarity=0.566 Sum_probs=22.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
-.++|+|++|||||||++.|+|...
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3799999999999999999999643
No 372
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.29 E-value=0.017 Score=61.12 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||+++|++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999875
No 373
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.28 E-value=0.028 Score=67.52 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
+++|+|++|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
No 374
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.20 E-value=0.023 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|||||||.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999875
No 375
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.20 E-value=0.016 Score=62.09 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
.+++|+|++|||||||++.|+|..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 469999999999999999998864
No 376
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.17 E-value=0.03 Score=67.47 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
+++|||++|||||||++.|.|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 7999999999999999999986
No 377
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.13 E-value=0.14 Score=48.38 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=41.4
Q ss_pred CCeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 358 NGGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 358 ~g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
+..+++++|||+..... +...+..+|.+++|++.+.. .......+.+.+..++. ..+.+|+||++
T Consensus 130 ~~yD~viiD~pp~~~~~----------~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~~~~~~~--~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL----------TRGTAKAVDMMIAVIEPNLN-SIKTGLNIEKLAGDLGI--KKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTTC----------CHHHHTTCSEEEEEECSSHH-HHHHHHHHHHHHHHHTC--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccHH----------HHHHHHHCCEEEEecCCCHH-HHHHHHHHHHHHHHcCC--ccEEEEEeCCC
Confidence 34578899998764321 22334678999999876533 23334444556666654 45789999998
No 378
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.09 E-value=0.024 Score=52.80 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 379
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.09 E-value=0.049 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-+.|+|++|+|||||++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 380
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.08 E-value=0.029 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.1
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 381
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.08 E-value=0.026 Score=50.86 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 382
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.08 E-value=0.033 Score=64.79 Aligned_cols=32 Identities=47% Similarity=0.648 Sum_probs=26.7
Q ss_pred EEEEEccCCCChHHHHHhhhCCccccccccccccCCeeEEEEE
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVLAEDRLFATLDPTTRRVQM 356 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~~~~~~~~Tld~ttr~i~l 356 (536)
.++|+|++|||||||++.|+|. +.++.+.+.+
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl-----------l~P~sG~I~~ 732 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE-----------LLPTSGEVYT 732 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS-----------SCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEE
Confidence 7999999999999999999986 3445566665
No 383
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.06 E-value=0.023 Score=62.91 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGAT 336 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~ 336 (536)
-.++|+|++|||||||++.|+|..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 369999999999999999999864
No 384
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.02 E-value=0.25 Score=48.70 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=38.3
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEE-EEEEcCCCC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKL-MIWNKVDKV 437 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piI-vVlNKiDl~ 437 (536)
+++|+|||+...... +..-...+|.+++|+...... ........+.+.. .+.+++ +|+|++|..
T Consensus 193 D~VIIDtpp~~~~~d---------~~~l~~~aD~vilVv~~~~~~-~~~~~~~~~~l~~---~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 193 NFVIIDTPPVNTVTD---------AQLFSKFTGNVVYVVNSENNN-KDEVKKGKELIEA---TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp SEEEEECCCTTTCSH---------HHHHHHHHCEEEEEEETTSCC-HHHHHHHHHHHHT---TTCEEEEEEEEEECC-
T ss_pred CEEEEeCCCCchHHH---------HHHHHHHCCEEEEEEeCCCCc-HHHHHHHHHHHHh---CCCCEEEEEEeCCcCC
Confidence 678999998643211 111234689999999876543 3333333444444 345666 899999854
No 385
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.00 E-value=0.031 Score=60.92 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCCcc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
-.++|+|++|||||||++.|+|...
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999999744
No 386
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.00 E-value=0.021 Score=61.53 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++|+|++|||||||+++|+|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46999999999999999999874
No 387
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.00 E-value=0.21 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.+.+.|+||+|||+|.+++...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4677799999999999999753
No 388
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.99 E-value=0.35 Score=42.53 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.|.|.|++|+|||++.+++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999753
No 389
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.97 E-value=0.023 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.3
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++|||||||++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 390
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.95 E-value=0.026 Score=53.08 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
|+|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999753
No 391
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.94 E-value=0.16 Score=49.30 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=42.4
Q ss_pred CeeEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCC
Q 009371 359 GGEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVD 435 (536)
Q Consensus 359 g~~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiD 435 (536)
..+++++|||+.... .+...+..+|.+++++..+.. .......+.+.+..++. +.++.+|+|+++
T Consensus 144 ~yD~viiD~pp~~~~----------~~~~~l~~aD~vivv~~~~~~-s~~~~~~~~~~l~~~~~-~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV----------TLKNALLCSDYVIIPMTAEKW-AVESLDLFNFFVRKLNL-FLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCSH----------HHHHHHTTCSEEEEEEESCTT-HHHHHHHHHHHHHTTTC-CCCEEEEEEEEC
T ss_pred CCCEEEEECcCCccH----------HHHHHHHHCCeEEEEeCCChH-HHHHHHHHHHHHHHHhc-cCCEEEEEeccc
Confidence 357899999986321 122334569999999987543 33444455556666543 457889999994
No 392
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.88 E-value=0.028 Score=51.20 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 393
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.87 E-value=0.023 Score=58.87 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..++++|++|||||||++.|++.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 37899999999999999999864
No 394
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.84 E-value=0.059 Score=51.95 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
++|+|++|+|||||++++++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 395
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.81 E-value=0.026 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 396
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.79 E-value=0.2 Score=50.01 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=40.2
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEEEEEEcCCCCC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMIWNKVDKVC 438 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~~ 438 (536)
+++|+|||+...... +..-...+|.+++|+....... .......+.+...+. ...-+|+|++|...
T Consensus 203 D~VIIDtpp~~~~~d---------a~~l~~~aD~vllVv~~~~~~~-~~~~~~~~~l~~~g~--~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 203 DLVLIDTPPILAVTD---------AAIVGRHVGTTLMVARYAVNTL-KEVETSLSRFEQNGI--PVKGVILNSIFRRA 268 (286)
T ss_dssp SEEEEECCCTTTCTH---------HHHHTTTCSEEEEEEETTTSBH-HHHHHHHHHHHHTTC--CCCEEEEEEECCCC
T ss_pred CEEEEcCCCCcchHH---------HHHHHHHCCeEEEEEeCCCCcH-HHHHHHHHHHHhCCC--CEEEEEEcCccccc
Confidence 578999998743211 1122356899999998766543 333334445555442 23458999998654
No 397
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.79 E-value=0.034 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=20.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g 334 (536)
++.++|+|++|||||||++.|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 398
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.77 E-value=0.033 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999975
No 399
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.76 E-value=0.036 Score=61.39 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=22.0
Q ss_pred EEEEEccCCCChHHHHHhhhCCcc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATV 337 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~ 337 (536)
.++|+|++|||||||++.|+|...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999999743
No 400
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.76 E-value=0.44 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|.|.|++|+|||+|.++++.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.73 E-value=0.034 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.0
Q ss_pred CEEEEEccCCCChHHHHHhhh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT 333 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~ 333 (536)
...+|+|++|+|||||+.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999985
No 402
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.73 E-value=0.033 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|.++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 403
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.64 E-value=0.52 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-|.|+|+||+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999863
No 404
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.58 E-value=0.39 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..+.|.|++|+|||||++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 405
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.55 E-value=0.54 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g 334 (536)
...+.|.|++|+|||+|.+++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999988764
No 406
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.54 E-value=0.076 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.1
Q ss_pred CCEEEEEccCCCChHHHHHhhhCC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
...|+|+|++|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 407
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.53 E-value=0.034 Score=57.55 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.1
Q ss_pred CEEEEEccCCCChHHHHHhhh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT 333 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~ 333 (536)
...+|+|++|||||||+++|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999987
No 408
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.50 E-value=0.47 Score=41.68 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=19.1
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
|.|.|++|+|||++.+++...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 899999999999999998753
No 409
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.50 E-value=0.038 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 410
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.49 E-value=0.029 Score=57.83 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
+++|+|++|||||||++.|+|.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999985
No 411
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.46 E-value=0.073 Score=52.25 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
++|+|++|+|||||+++|++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 412
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.43 E-value=0.22 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|.|.|++|+|||+|.+++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 413
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.41 E-value=0.044 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
+.|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 414
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.38 E-value=0.04 Score=66.11 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
+++|+|++|||||||++.|.|.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999986
No 415
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.38 E-value=0.041 Score=50.16 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+++|++||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.31 E-value=0.033 Score=55.22 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.4
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|+|||||++.|++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 417
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.25 E-value=0.042 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 418
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.051 Score=60.21 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.3
Q ss_pred EEEEEccCCCChHHHHHhhhCCccc
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGATVL 338 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~~~~ 338 (536)
.++|+|++|||||||++.|+|....
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5899999999999999999997543
No 419
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.10 E-value=0.025 Score=52.71 Aligned_cols=21 Identities=38% Similarity=0.775 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 420
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.04 E-value=0.17 Score=57.89 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.8
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|++|+|||||+++|.+.
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
No 421
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.02 E-value=0.32 Score=48.65 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=37.0
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhccceEEEEeCCCcchHHHHHHHHHHHhhcCCCCCCEE-EEEEcCCCC
Q 009371 361 EFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKL-MIWNKVDKV 437 (536)
Q Consensus 361 ~i~LiDTpG~i~~lp~~l~e~f~~tl~ei~~aDliLlVvD~s~~~~~~~~~~v~~vL~~l~~~~~piI-vVlNKiDl~ 437 (536)
+++|+|||+...... +..-...+|.+++|+......... .....+.+... +.+++ +|+|++|..
T Consensus 215 D~VIIDtpp~~~~~d---------~~~l~~~ad~vilV~~~~~~~~~~-~~~~~~~l~~~---~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVSD---------AAVVGRSVGTSLLVARFGLNTAKE-VSLSMQRLEQA---GVNIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCTH---------HHHHGGGCSEEEEEEETTTSCTTH-HHHHHHHHHHT---TCCCCCEEEEECCCC
T ss_pred CEEEEcCCCCchhHH---------HHHHHHHCCEEEEEEcCCCChHHH-HHHHHHHHHhC---CCCeEEEEEeCCccC
Confidence 578999998643211 111235689999998876543322 23333344443 33433 788999854
No 422
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.93 E-value=0.062 Score=49.22 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|.+||||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 423
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.92 E-value=0.045 Score=49.83 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|.+||||||+.+.|.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 424
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.86 E-value=0.049 Score=49.42 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 425
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.84 E-value=0.062 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 426
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.77 E-value=0.042 Score=55.80 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|+|||||++.+++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 427
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.77 E-value=0.27 Score=56.17 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.-|.+.|+||+|||+|.+++++.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
No 428
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.76 E-value=0.052 Score=49.42 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.4
Q ss_pred CEEEEEccCCCChHHHHHhhh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT 333 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~ 333 (536)
+.|+|+|++||||||+.+.|.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 429
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.76 E-value=0.047 Score=51.70 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++|+|++|+|||||+..|++
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 699999999999999999987
No 430
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.75 E-value=0.059 Score=49.55 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=20.1
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 431
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.71 E-value=0.058 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999974
No 432
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.68 E-value=0.055 Score=52.82 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|++|||||||.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 433
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.64 E-value=0.059 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.9
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999953
No 434
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.64 E-value=0.051 Score=50.63 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++|+|++|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 435
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.60 E-value=0.046 Score=58.12 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
+++|+|++|||||||++.|+|.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6999999999999999999985
No 436
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.59 E-value=0.12 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|.++|++||||||+.+.|..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 437
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.52 E-value=0.064 Score=48.79 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|.+||||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 438
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.48 E-value=0.011 Score=57.44 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEccCCCChHHHHHhhhCC
Q 009371 315 VSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 315 VaIVG~tnAGKSTLlNaL~g~ 335 (536)
++|+|++|||||||+++|++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999985
No 439
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.42 E-value=0.074 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 440
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.42 E-value=0.067 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 441
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.41 E-value=0.067 Score=49.36 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 442
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.35 E-value=0.068 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=18.9
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999963
No 443
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.35 E-value=0.071 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.7
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|.+||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999854
No 444
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.33 E-value=0.07 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 445
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.28 E-value=0.062 Score=49.00 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=19.5
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
+.|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 446
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.27 E-value=0.2 Score=51.46 Aligned_cols=58 Identities=29% Similarity=0.387 Sum_probs=35.1
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc---ccc--ccccccCCeeEEEEE--eCCeeEEEeecccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL---AED--RLFATLDPTTRRVQM--KNGGEFLLTDTVGF 370 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~--~~~~Tld~ttr~i~l--~~g~~i~LiDTpG~ 370 (536)
+.|+|+|+||||||||...|...--. ..| +....++.+|+.... ..|.+..++|...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDP 105 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCc
Confidence 36999999999999999999864210 011 122233333333221 24666777777665
No 447
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.25 E-value=0.069 Score=47.90 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 448
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.19 E-value=0.074 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 449
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.17 E-value=0.071 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 450
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.14 E-value=0.075 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.9
Q ss_pred CEEEEEccCCCChHHHHHhhh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT 333 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~ 333 (536)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999984
No 451
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.09 E-value=0.075 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999963
No 452
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.03 E-value=0.088 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|.|.+||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 453
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.99 E-value=0.06 Score=52.87 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|++||||||+.+.|.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999975
No 454
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.98 E-value=0.083 Score=47.21 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 455
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.92 E-value=0.081 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.7
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 456
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.91 E-value=0.081 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.7
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999964
No 457
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=91.91 E-value=0.026 Score=58.61 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++|+|++|||||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998843
No 458
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.91 E-value=0.079 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999974
No 459
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.90 E-value=0.082 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
+.|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 460
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.84 E-value=0.085 Score=48.91 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|+|++||||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 461
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.76 E-value=0.087 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.73 E-value=0.16 Score=53.43 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=46.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCC---ccccccc--cccccCCeeEEEEE--eCCeeEEEeecccccccchh-hHHHHHHH
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA---TVLAEDR--LFATLDPTTRRVQM--KNGGEFLLTDTVGFIQKLPT-TLVAAFRA 384 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~---~~~~~~~--~~~Tld~ttr~i~l--~~g~~i~LiDTpG~i~~lp~-~l~e~f~~ 384 (536)
+.|+|+|+||||||||...|... .+...|. .+..++.+|+.... ..|.+..++|...+...... ...+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~ 82 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMN 82 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHH
Confidence 46899999999999999998642 1111111 22223333333221 24667777887666433221 11222233
Q ss_pred hHHHHHhccceEEEEeC
Q 009371 385 TLEEISESSLLVHVVDI 401 (536)
Q Consensus 385 tl~ei~~aDliLlVvD~ 401 (536)
.++.+....-+.+++-.
T Consensus 83 ~i~~i~~~g~~pilVGG 99 (409)
T 3eph_A 83 AIEDIHRRGKIPIVVGG 99 (409)
T ss_dssp HHHHHHTTTCEEEEECS
T ss_pred HHHHHHhcCCCEEEECC
Confidence 44455444444444433
No 463
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.65 E-value=0.26 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.-|.|.|++|+|||+|.+++...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999853
No 464
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.62 E-value=0.074 Score=55.43 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++|+|++|+|||||++.|.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
No 465
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.60 E-value=0.084 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|.|+|++||||||+.+.|..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 466
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.57 E-value=0.22 Score=50.77 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=35.9
Q ss_pred CEEEEEccCCCChHHHHHhhhCCccc---ccc--ccccccCCeeEEEEE--eCCeeEEEeecccccc
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGATVL---AED--RLFATLDPTTRRVQM--KNGGEFLLTDTVGFIQ 372 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~~~~---~~~--~~~~Tld~ttr~i~l--~~g~~i~LiDTpG~i~ 372 (536)
+.|+|+|+||||||||...|...-.. ..| +....++.+|+.... .+|.+..++|...+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e 70 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSE 70 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTS
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhh
Confidence 46899999999999999999753210 011 112233333332221 2566777888776644
No 467
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.55 E-value=0.41 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..+.|.|++|+|||||++++...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 468
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.54 E-value=0.082 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|+|.+||||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 469
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.47 E-value=0.15 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.+.|.|++|+|||||++++.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999853
No 470
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.45 E-value=0.54 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.+.|+|++|+|||++.++|.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999763
No 471
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.44 E-value=0.11 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..+.|.|++|+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 472
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.42 E-value=0.075 Score=61.86 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.++|+|++|||||||++.|+|.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999853
No 473
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.42 E-value=0.096 Score=49.22 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.36 E-value=0.081 Score=51.99 Aligned_cols=21 Identities=43% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++|+|++|+|||||+..+++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999986
No 475
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.28 E-value=0.098 Score=53.25 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.8
Q ss_pred CEEEEEccCCCChHHHHHhhh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT 333 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~ 333 (536)
...+|+|++|+|||||+.+++
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367999999999999999974
No 476
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.27 E-value=0.076 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.384 Sum_probs=15.7
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|.|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999863
No 477
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.23 E-value=0.074 Score=59.35 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=18.4
Q ss_pred EEEEEccCCCChHHHHHhhh
Q 009371 314 VVSLVGYTNAGKSTLLNRLT 333 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~ 333 (536)
.++|+|++|||||||++.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 79999999999999998764
No 478
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.13 E-value=0.085 Score=53.27 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHhhh
Q 009371 314 VVSLVGYTNAGKSTLLNRLT 333 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~ 333 (536)
..+|+|++|||||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999997
No 479
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.10 E-value=0.56 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.+.|+|++|+|||||+..++.
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 480
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.00 E-value=0.11 Score=49.27 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 481
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.00 E-value=0.12 Score=47.61 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999965
No 482
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.91 E-value=0.89 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.5
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
+.+.|.|++|+|||||.+.|...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999853
No 483
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.82 E-value=0.62 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
-|.|+|++|+|||||++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 484
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=90.73 E-value=0.1 Score=54.86 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.0
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..++|+|++|+|||||++++++
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 485
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.71 E-value=0.13 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.9
Q ss_pred CCEEEEEccCCCChHHHHHhhhC
Q 009371 312 VPVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 312 ~~~VaIVG~tnAGKSTLlNaL~g 334 (536)
+..|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 486
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.65 E-value=0.13 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.5
Q ss_pred CEEEEEccCCCChHHHHHhhh
Q 009371 313 PVVSLVGYTNAGKSTLLNRLT 333 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~ 333 (536)
..|+|.|++||||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 487
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.57 E-value=0.19 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.+.|.|++|+|||||++++.+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 488
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.56 E-value=3.1 Score=41.12 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=27.4
Q ss_pred cceEEEEeCCCcch-HHHHHHHHHHHhhcCCCCCCEEEEEEcCCCC
Q 009371 393 SLLVHVVDISHPLA-EQQIEAVDKVLSELDVSSIPKLMIWNKVDKV 437 (536)
Q Consensus 393 DliLlVvD~s~~~~-~~~~~~v~~vL~~l~~~~~piIvVlNKiDl~ 437 (536)
+.-++++|=-+... ......+..+++... .+..+|+..|..+..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcccc
Confidence 45666777666665 555556666666542 346777777876644
No 489
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.55 E-value=0.13 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.4
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..|+|.|++||||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 490
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.42 E-value=0.14 Score=49.54 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.8
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|.|++||||||+.+.|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999963
No 491
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.41 E-value=0.13 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.6
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 492
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.26 E-value=0.15 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..+.|.|++|+|||||++++..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 493
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.23 E-value=0.25 Score=53.79 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.7
Q ss_pred CCCEEEEEccCCCChHHHHHhhhCC
Q 009371 311 PVPVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 311 ~~~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..+.++|+|+||+|||||+++|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999764
No 494
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=90.23 E-value=0.12 Score=53.46 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.++|+|++|+|||||++++.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 689999999999999999974
No 495
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.18 E-value=0.17 Score=48.27 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.9
Q ss_pred CEEEEEccCCCChHHHHHhhhC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g 334 (536)
..|+|+|.+||||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 496
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.17 E-value=0.15 Score=48.39 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHhhhC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTG 334 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g 334 (536)
.|.|+|+|||||+|....|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999974
No 497
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.96 E-value=0.09 Score=57.55 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEEEEeccCCCCCcccccchHHHHHHHHHHhCCcEEEeC--------CCCC-HHHHHHHHHH
Q 009371 148 ESLKELAQLADTAGLMVVGSTHQKLNSPNPRTYIGSGKVAEIKSAIHALGVETVIFD--------DELS-AGQLRNLEKA 218 (536)
Q Consensus 148 ~~l~El~~L~~~~g~~vv~~~~~~~~~~~~~~~~g~Gk~~e~~~~~~~~~~~~vi~~--------~~Ls-p~Q~~nle~~ 218 (536)
..-.|++++....||..|-.+ |-|+-+|.+ -.+-++..+.+.+ +.++.+ ++++ ..-.+..+..
T Consensus 149 ~tp~e~r~~~~~~gw~~v~af-qtrnp~Hra------h~~~~~~~~~~~~-~~lll~pl~g~~k~~d~~~~~r~~~~~~~ 220 (552)
T 3cr8_A 149 ATPAELRALFVRRGWRRIIAW-QARQPMHRA------QYEFCLKSAIENE-ANLLLHPQVGGDITEAPAYFGLVRSFLAI 220 (552)
T ss_dssp CCHHHHHHHHHHTTCCSEEEE-CCSSCCCHH------HHHHHHHHHHHTT-CEEEECCBCCCCTTTCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCceEEE-ecCCCCchH------HHHHHHHHHHhcC-CeEEEEeccCCCCCCCCCHHHHHHHHHHH
Confidence 456899999999999655545 877766654 3555566555544 444443 2332 3455666666
Q ss_pred hCCCceeeccchhhhhhhh---hccccchhhc
Q 009371 219 FGGDVRVCDRTALILDIFN---QRAATHEAAL 247 (536)
Q Consensus 219 ~~~~~~V~DR~~lil~IF~---~rA~t~eakL 247 (536)
+. .+++-.++|.+|. ..|.-+||-+
T Consensus 221 ~~----~~p~~~~~l~~~p~~m~~agprea~~ 248 (552)
T 3cr8_A 221 RD----RFPAATTQLSLLPAPPPEASGRALLL 248 (552)
T ss_dssp GG----GSCGGGEEECBBCSCCCCSCSHHHHH
T ss_pred HH----hCCCccEEEeecchhhcccCcHHHHH
Confidence 53 4577777877775 3477777765
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.92 E-value=0.12 Score=55.80 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=17.8
Q ss_pred EEEEEccCCCChHHHHHhh
Q 009371 314 VVSLVGYTNAGKSTLLNRL 332 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL 332 (536)
.++|+|++|||||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6999999999999999994
No 499
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.91 E-value=0.21 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHhhhCC
Q 009371 314 VVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 314 ~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
.+.|.|++|+|||||++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 500
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.89 E-value=0.17 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.2
Q ss_pred CEEEEEccCCCChHHHHHhhhCC
Q 009371 313 PVVSLVGYTNAGKSTLLNRLTGA 335 (536)
Q Consensus 313 ~~VaIVG~tnAGKSTLlNaL~g~ 335 (536)
..+.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
Done!