Query 009372
Match_columns 536
No_of_seqs 276 out of 2783
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 12:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 1.4E-59 3.1E-64 481.8 50.2 513 16-534 52-564 (567)
2 TIGR02731 phytoene_desat phyto 100.0 4.2E-48 9.2E-53 392.6 45.1 448 59-515 1-453 (453)
3 PLN02487 zeta-carotene desatur 100.0 1.3E-43 2.8E-48 358.5 46.7 461 56-532 74-566 (569)
4 TIGR02732 zeta_caro_desat caro 100.0 1.6E-43 3.6E-48 356.8 44.2 447 59-515 1-474 (474)
5 PRK07233 hypothetical protein; 100.0 6.8E-39 1.5E-43 325.3 39.9 427 59-519 1-432 (434)
6 PRK12416 protoporphyrinogen ox 100.0 2.4E-38 5.3E-43 322.1 36.0 425 57-518 1-461 (463)
7 COG3349 Uncharacterized conser 100.0 4.6E-39 1E-43 308.8 27.5 465 58-532 1-477 (485)
8 PLN02268 probable polyamine ox 100.0 9.8E-39 2.1E-43 322.6 29.4 414 58-518 1-434 (435)
9 COG1231 Monoamine oxidase [Ami 100.0 1.2E-38 2.7E-43 299.5 26.8 430 55-520 5-449 (450)
10 TIGR00562 proto_IX_ox protopor 100.0 3E-37 6.4E-42 314.9 36.3 423 57-519 2-461 (462)
11 PRK11883 protoporphyrinogen ox 100.0 7.3E-37 1.6E-41 311.7 34.9 419 58-516 1-450 (451)
12 PLN02576 protoporphyrinogen ox 100.0 4.2E-37 9.2E-42 316.0 32.6 432 54-520 9-489 (496)
13 PLN02529 lysine-specific histo 100.0 4.7E-37 1E-41 316.5 32.3 430 55-530 158-610 (738)
14 PLN02676 polyamine oxidase 100.0 7.1E-37 1.5E-41 308.5 31.6 426 54-521 23-476 (487)
15 COG1232 HemY Protoporphyrinoge 100.0 1.6E-36 3.4E-41 293.6 28.6 410 58-515 1-443 (444)
16 TIGR03467 HpnE squalene-associ 100.0 4.7E-35 1E-39 295.9 40.6 414 71-515 1-418 (419)
17 KOG0029 Amine oxidase [Seconda 100.0 2.4E-36 5.3E-41 300.1 29.5 442 53-520 11-461 (501)
18 PLN02568 polyamine oxidase 100.0 2.6E-36 5.6E-41 306.0 29.9 444 56-519 4-536 (539)
19 PLN03000 amine oxidase 100.0 9E-36 1.9E-40 307.3 32.0 424 55-524 182-629 (881)
20 PLN02328 lysine-specific histo 100.0 9.8E-36 2.1E-40 307.7 31.4 426 55-525 236-686 (808)
21 PRK07208 hypothetical protein; 100.0 1.2E-34 2.5E-39 296.6 36.5 424 56-517 3-460 (479)
22 KOG0685 Flavin-containing amin 100.0 5.5E-35 1.2E-39 274.2 25.5 427 54-524 18-497 (498)
23 TIGR02733 desat_CrtD C-3',4' d 100.0 2.6E-33 5.7E-38 287.0 39.7 436 57-516 1-490 (492)
24 PLN02976 amine oxidase 100.0 5.1E-34 1.1E-38 301.1 33.4 424 55-520 691-1188(1713)
25 TIGR02734 crtI_fam phytoene de 100.0 9.9E-33 2.1E-37 283.7 35.1 431 60-518 1-492 (502)
26 TIGR02730 carot_isom carotene 100.0 1.2E-31 2.5E-36 274.1 37.2 436 58-518 1-492 (493)
27 PF01593 Amino_oxidase: Flavin 100.0 9.8E-34 2.1E-38 289.0 13.6 434 67-515 1-450 (450)
28 KOG1276 Protoporphyrinogen oxi 100.0 8.2E-29 1.8E-33 228.7 25.4 426 54-515 8-490 (491)
29 COG1233 Phytoene dehydrogenase 100.0 4.6E-27 1E-31 237.9 28.9 430 56-517 2-482 (487)
30 COG2907 Predicted NAD/FAD-bind 100.0 1.1E-26 2.4E-31 208.5 20.3 282 55-359 6-300 (447)
31 KOG4254 Phytoene desaturase [C 99.9 2E-24 4.4E-29 200.5 31.4 247 259-521 252-549 (561)
32 COG3380 Predicted NAD/FAD-depe 99.9 2E-25 4.4E-30 194.0 13.2 325 58-518 2-331 (331)
33 PRK13977 myosin-cross-reactive 99.9 4.6E-20 9.9E-25 183.4 31.3 437 53-516 18-522 (576)
34 PTZ00363 rab-GDP dissociation 99.8 2.8E-17 6.2E-22 162.6 23.6 259 55-328 2-288 (443)
35 TIGR03329 Phn_aa_oxid putative 99.8 9.3E-18 2E-22 170.2 18.1 61 271-336 182-242 (460)
36 TIGR01373 soxB sarcosine oxida 99.7 6.6E-16 1.4E-20 155.0 18.3 59 271-330 182-240 (407)
37 PRK00711 D-amino acid dehydrog 99.7 6.5E-15 1.4E-19 148.5 19.3 58 271-330 200-257 (416)
38 PF01266 DAO: FAD dependent ox 99.6 8.1E-15 1.8E-19 144.9 18.0 62 271-335 146-207 (358)
39 PRK12409 D-amino acid dehydrog 99.6 4.6E-14 1E-18 141.8 22.3 58 271-330 196-258 (410)
40 TIGR01377 soxA_mon sarcosine o 99.6 1.7E-14 3.7E-19 143.7 18.6 57 271-330 144-200 (380)
41 TIGR00031 UDP-GALP_mutase UDP- 99.6 4.9E-14 1.1E-18 136.3 20.7 240 57-332 1-249 (377)
42 KOG2820 FAD-dependent oxidored 99.6 3.2E-14 7E-19 128.6 17.8 66 271-337 152-218 (399)
43 COG2081 Predicted flavoprotein 99.6 1.1E-14 2.4E-19 136.0 12.3 168 56-332 2-169 (408)
44 PF06100 Strep_67kDa_ant: Stre 99.6 2.8E-12 6.1E-17 124.0 29.0 254 57-330 2-274 (500)
45 PRK11259 solA N-methyltryptoph 99.6 7.1E-14 1.5E-18 139.0 18.7 62 271-336 148-209 (376)
46 PF13450 NAD_binding_8: NAD(P) 99.6 5.9E-15 1.3E-19 105.5 5.8 66 62-128 1-68 (68)
47 COG0579 Predicted dehydrogenas 99.5 3.8E-14 8.2E-19 137.2 12.3 59 271-330 152-211 (429)
48 COG0665 DadA Glycine/D-amino a 99.5 3E-12 6.6E-17 127.9 24.2 57 271-330 155-212 (387)
49 PRK11101 glpA sn-glycerol-3-ph 99.5 1.6E-13 3.5E-18 141.5 14.2 62 271-334 148-214 (546)
50 PF03486 HI0933_like: HI0933-l 99.5 9.6E-14 2.1E-18 136.1 10.9 59 271-330 108-166 (409)
51 PRK01747 mnmC bifunctional tRN 99.5 9.9E-13 2.1E-17 139.5 19.2 62 271-336 407-468 (662)
52 TIGR03364 HpnW_proposed FAD de 99.5 3.3E-13 7.1E-18 133.5 12.2 59 271-337 144-203 (365)
53 PLN02464 glycerol-3-phosphate 99.5 2E-11 4.3E-16 127.5 24.6 60 271-330 231-296 (627)
54 PRK10157 putative oxidoreducta 99.4 7.9E-12 1.7E-16 125.5 20.2 56 273-330 109-164 (428)
55 PRK11728 hydroxyglutarate oxid 99.4 2.9E-13 6.4E-18 134.9 9.5 57 271-330 148-204 (393)
56 COG0644 FixC Dehydrogenases (f 99.4 8.6E-11 1.9E-15 117.0 25.4 63 273-336 96-159 (396)
57 PRK10015 oxidoreductase; Provi 99.4 1.3E-10 2.9E-15 116.5 26.4 55 273-329 109-163 (429)
58 PRK12266 glpD glycerol-3-phosp 99.4 8.2E-11 1.8E-15 120.5 25.4 58 271-330 154-216 (508)
59 PTZ00383 malate:quinone oxidor 99.4 5.5E-12 1.2E-16 127.1 16.2 59 271-331 210-274 (497)
60 PRK07045 putative monooxygenas 99.4 7.2E-11 1.6E-15 117.8 23.7 62 273-334 107-170 (388)
61 PRK08773 2-octaprenyl-3-methyl 99.4 9.5E-11 2.1E-15 117.1 24.2 62 272-335 113-175 (392)
62 PRK13369 glycerol-3-phosphate 99.4 5.1E-11 1.1E-15 122.2 22.1 61 271-334 154-218 (502)
63 PF00996 GDI: GDP dissociation 99.4 7.3E-11 1.6E-15 115.5 21.4 251 55-324 2-283 (438)
64 COG1635 THI4 Ribulose 1,5-bisp 99.4 8.7E-12 1.9E-16 106.3 12.6 42 56-97 29-70 (262)
65 PRK07364 2-octaprenyl-6-methox 99.4 2.5E-10 5.5E-15 115.1 25.6 38 55-92 16-53 (415)
66 PRK05714 2-octaprenyl-3-methyl 99.4 3.3E-10 7.2E-15 113.7 25.6 63 273-337 113-176 (405)
67 PRK07121 hypothetical protein; 99.4 4.2E-11 9E-16 122.9 19.3 60 271-330 176-239 (492)
68 TIGR01988 Ubi-OHases Ubiquinon 99.3 2.9E-10 6.2E-15 113.6 24.1 62 272-335 106-169 (385)
69 COG0578 GlpA Glycerol-3-phosph 99.3 8.4E-11 1.8E-15 116.5 18.8 70 263-335 154-229 (532)
70 PRK04176 ribulose-1,5-biphosph 99.3 2.1E-11 4.6E-16 112.7 13.0 59 272-330 104-173 (257)
71 TIGR01984 UbiH 2-polyprenyl-6- 99.3 1.1E-09 2.4E-14 109.1 26.3 63 272-336 105-169 (382)
72 PRK06184 hypothetical protein; 99.3 2.3E-10 5.1E-15 117.8 22.0 61 274-336 111-175 (502)
73 COG0654 UbiH 2-polyprenyl-6-me 99.3 7.7E-10 1.7E-14 110.0 24.8 63 272-336 104-169 (387)
74 PRK07333 2-octaprenyl-6-methox 99.3 1.3E-10 2.9E-15 116.7 19.3 62 272-335 111-173 (403)
75 PRK06847 hypothetical protein; 99.3 2.4E-10 5.3E-15 113.6 21.0 56 273-330 108-163 (375)
76 TIGR00292 thiazole biosynthesi 99.3 4.3E-11 9.3E-16 110.2 14.3 41 56-96 20-60 (254)
77 COG0562 Glf UDP-galactopyranos 99.3 2.3E-11 5E-16 109.7 11.9 241 57-333 1-244 (374)
78 PRK08243 4-hydroxybenzoate 3-m 99.3 1.8E-09 4E-14 107.7 26.7 61 57-133 2-64 (392)
79 PRK06481 fumarate reductase fl 99.3 1.3E-10 2.7E-15 119.2 18.7 57 272-329 190-250 (506)
80 PRK07494 2-octaprenyl-6-methox 99.3 1.2E-10 2.6E-15 116.3 18.1 62 272-335 111-173 (388)
81 PRK08020 ubiF 2-octaprenyl-3-m 99.3 1.3E-09 2.9E-14 108.9 25.7 62 273-336 113-176 (391)
82 PRK07190 hypothetical protein; 99.3 1.2E-09 2.6E-14 111.2 24.9 59 276-336 113-172 (487)
83 KOG2844 Dimethylglycine dehydr 99.3 1.7E-11 3.7E-16 120.5 10.7 58 271-330 186-243 (856)
84 TIGR01320 mal_quin_oxido malat 99.3 7.5E-12 1.6E-16 126.6 8.6 59 271-330 177-240 (483)
85 PRK06834 hypothetical protein; 99.3 2.2E-10 4.8E-15 116.7 19.1 60 274-335 102-162 (488)
86 PRK06185 hypothetical protein; 99.3 9.4E-10 2E-14 110.6 23.5 63 273-336 109-176 (407)
87 PRK09126 hypothetical protein; 99.3 4.3E-10 9.2E-15 112.5 20.8 59 275-335 113-173 (392)
88 PRK05257 malate:quinone oxidor 99.3 1.7E-11 3.7E-16 124.1 10.6 59 271-330 182-246 (494)
89 PLN02463 lycopene beta cyclase 99.3 1.6E-09 3.5E-14 108.3 23.8 56 272-330 114-169 (447)
90 PRK06183 mhpA 3-(3-hydroxyphen 99.3 3.4E-09 7.4E-14 110.1 27.1 63 55-133 8-70 (538)
91 PRK08849 2-octaprenyl-3-methyl 99.3 1.5E-09 3.1E-14 108.1 23.3 60 274-335 112-173 (384)
92 PRK07608 ubiquinone biosynthes 99.3 2.5E-09 5.5E-14 106.9 25.1 61 272-335 111-173 (388)
93 PF01946 Thi4: Thi4 family; PD 99.3 3.5E-11 7.6E-16 103.6 9.9 42 56-97 16-57 (230)
94 PRK07588 hypothetical protein; 99.3 7.2E-10 1.6E-14 110.7 20.9 58 274-334 105-163 (391)
95 TIGR02032 GG-red-SF geranylger 99.3 6.1E-09 1.3E-13 99.9 26.6 62 272-335 91-154 (295)
96 TIGR01813 flavo_cyto_c flavocy 99.2 6.3E-11 1.4E-15 120.1 13.3 59 272-330 130-192 (439)
97 PRK08013 oxidoreductase; Provi 99.2 3.9E-09 8.4E-14 105.6 26.0 62 273-336 112-175 (400)
98 PRK08274 tricarballylate dehyd 99.2 1.9E-10 4.1E-15 117.5 16.9 58 271-329 130-191 (466)
99 PRK08850 2-octaprenyl-6-methox 99.2 2.3E-09 4.9E-14 107.6 24.3 60 275-336 114-175 (405)
100 PRK08244 hypothetical protein; 99.2 2.2E-09 4.8E-14 110.5 24.5 63 274-336 102-166 (493)
101 PLN00093 geranylgeranyl diphos 99.2 1.8E-08 3.8E-13 101.4 29.9 36 55-90 37-72 (450)
102 PRK08132 FAD-dependent oxidore 99.2 8.9E-09 1.9E-13 107.3 28.5 63 53-133 19-83 (547)
103 PRK13339 malate:quinone oxidor 99.2 1.3E-10 2.8E-15 116.8 13.8 59 271-330 183-247 (497)
104 PF01494 FAD_binding_3: FAD bi 99.2 7.4E-10 1.6E-14 109.3 19.1 64 273-336 112-179 (356)
105 PRK12845 3-ketosteroid-delta-1 99.2 9.3E-10 2E-14 113.6 19.1 58 272-330 217-278 (564)
106 PLN02697 lycopene epsilon cycl 99.2 2.7E-08 5.9E-13 101.1 29.2 56 273-330 193-248 (529)
107 PRK05732 2-octaprenyl-6-methox 99.2 1.3E-08 2.8E-13 102.1 26.3 53 276-330 116-169 (395)
108 TIGR01989 COQ6 Ubiquinone bios 99.2 1.5E-08 3.3E-13 102.4 26.1 64 273-336 118-190 (437)
109 PF00890 FAD_binding_2: FAD bi 99.2 6.5E-10 1.4E-14 112.1 15.6 58 272-330 141-203 (417)
110 PRK06126 hypothetical protein; 99.2 1.9E-09 4.2E-14 112.3 19.4 63 55-133 5-67 (545)
111 PRK11445 putative oxidoreducta 99.2 1.2E-08 2.5E-13 100.2 23.4 60 57-131 1-62 (351)
112 PRK06617 2-octaprenyl-6-methox 99.1 2.2E-08 4.7E-13 99.3 25.3 62 272-336 104-167 (374)
113 PRK07395 L-aspartate oxidase; 99.1 7.1E-10 1.5E-14 114.3 15.0 58 272-329 134-196 (553)
114 PRK06175 L-aspartate oxidase; 99.1 7.7E-10 1.7E-14 111.0 14.7 57 272-329 128-188 (433)
115 TIGR02023 BchP-ChlP geranylger 99.1 2.6E-08 5.7E-13 99.2 25.6 32 58-89 1-32 (388)
116 PRK12835 3-ketosteroid-delta-1 99.1 2.6E-09 5.7E-14 111.0 18.7 59 272-330 213-275 (584)
117 PRK12839 hypothetical protein; 99.1 3E-09 6.5E-14 110.2 19.0 60 271-330 213-276 (572)
118 TIGR00275 flavoprotein, HI0933 99.1 4.1E-10 9E-15 111.9 12.2 57 271-330 104-160 (400)
119 PRK06134 putative FAD-binding 99.1 2.1E-09 4.6E-14 112.0 17.7 59 271-330 216-278 (581)
120 TIGR02028 ChlP geranylgeranyl 99.1 3.9E-08 8.6E-13 97.9 25.9 36 58-93 1-36 (398)
121 PRK08294 phenol 2-monooxygenas 99.1 2.7E-08 5.9E-13 104.4 25.8 62 54-133 29-93 (634)
122 TIGR01790 carotene-cycl lycope 99.1 5.1E-08 1.1E-12 97.4 26.9 57 272-330 85-141 (388)
123 PF13738 Pyr_redox_3: Pyridine 99.1 1.8E-10 3.9E-15 103.9 8.2 50 278-329 88-137 (203)
124 PTZ00139 Succinate dehydrogena 99.1 8.7E-10 1.9E-14 115.2 14.4 59 272-330 166-229 (617)
125 KOG2853 Possible oxidoreductas 99.1 1E-08 2.2E-13 93.4 18.8 37 55-91 84-124 (509)
126 PRK07804 L-aspartate oxidase; 99.1 2E-09 4.4E-14 111.1 16.6 59 272-330 144-210 (541)
127 PLN02661 Putative thiazole syn 99.1 2.2E-09 4.7E-14 101.5 15.2 44 53-96 88-132 (357)
128 PRK09078 sdhA succinate dehydr 99.1 8.8E-10 1.9E-14 115.0 13.9 59 272-330 149-212 (598)
129 PRK07573 sdhA succinate dehydr 99.1 1.7E-09 3.6E-14 113.4 16.0 54 276-330 174-232 (640)
130 PRK08958 sdhA succinate dehydr 99.1 7E-10 1.5E-14 115.3 12.8 59 272-330 143-206 (588)
131 PRK08163 salicylate hydroxylas 99.1 4.1E-10 8.8E-15 112.8 10.6 56 273-330 110-166 (396)
132 PRK06452 sdhA succinate dehydr 99.1 1.4E-09 3E-14 112.9 14.7 58 272-330 136-198 (566)
133 TIGR01812 sdhA_frdA_Gneg succi 99.1 1.6E-09 3.5E-14 113.2 15.0 58 272-330 129-191 (566)
134 PRK12844 3-ketosteroid-delta-1 99.1 4.4E-09 9.6E-14 108.9 18.1 58 272-330 208-269 (557)
135 PRK06996 hypothetical protein; 99.1 5.7E-08 1.2E-12 97.1 25.4 62 273-336 116-182 (398)
136 PLN00128 Succinate dehydrogena 99.1 1.4E-09 3.1E-14 113.6 14.0 59 272-330 187-250 (635)
137 PRK07057 sdhA succinate dehydr 99.1 2.2E-09 4.8E-14 111.9 15.2 59 272-330 148-211 (591)
138 PLN02172 flavin-containing mon 99.1 1.4E-09 3.1E-14 109.4 13.3 44 55-98 8-51 (461)
139 PRK07843 3-ketosteroid-delta-1 99.1 3.5E-09 7.6E-14 109.8 16.3 44 55-98 5-48 (557)
140 PRK06263 sdhA succinate dehydr 99.1 3.6E-09 7.9E-14 109.6 16.2 59 272-330 134-197 (543)
141 PRK05192 tRNA uridine 5-carbox 99.1 1.2E-09 2.6E-14 110.8 12.1 56 273-330 101-157 (618)
142 TIGR00551 nadB L-aspartate oxi 99.1 4.3E-09 9.4E-14 107.7 16.5 58 272-330 128-189 (488)
143 PLN02985 squalene monooxygenas 99.1 5.4E-08 1.2E-12 99.6 24.3 65 53-133 39-103 (514)
144 PRK12842 putative succinate de 99.1 4.6E-09 1E-13 109.6 16.7 44 55-98 7-50 (574)
145 TIGR03378 glycerol3P_GlpB glyc 99.1 9.6E-10 2.1E-14 106.9 10.6 63 272-335 263-327 (419)
146 TIGR02352 thiamin_ThiO glycine 99.1 8.8E-09 1.9E-13 100.9 17.7 63 271-336 136-198 (337)
147 PRK05868 hypothetical protein; 99.1 2.2E-08 4.8E-13 98.9 20.6 50 284-335 116-166 (372)
148 PRK08401 L-aspartate oxidase; 99.0 4.3E-09 9.4E-14 106.9 15.8 56 272-330 120-175 (466)
149 PRK12843 putative FAD-binding 99.0 1.4E-08 3E-13 105.9 18.8 58 272-330 221-282 (578)
150 PRK07803 sdhA succinate dehydr 99.0 6E-09 1.3E-13 109.3 16.2 41 56-96 7-47 (626)
151 PLN02815 L-aspartate oxidase 99.0 4.4E-09 9.5E-14 108.9 15.0 59 272-330 155-222 (594)
152 PF04820 Trp_halogenase: Trypt 99.0 3E-09 6.6E-14 107.0 13.3 58 272-330 154-211 (454)
153 PRK05945 sdhA succinate dehydr 99.0 3.9E-09 8.4E-14 110.0 14.4 58 272-330 135-197 (575)
154 PRK08641 sdhA succinate dehydr 99.0 9.2E-09 2E-13 107.2 16.7 59 272-330 133-200 (589)
155 PRK12837 3-ketosteroid-delta-1 99.0 1.8E-08 3.9E-13 103.6 18.6 42 55-97 5-46 (513)
156 PF05834 Lycopene_cycl: Lycope 99.0 1.9E-07 4.2E-12 92.2 24.9 55 273-330 88-142 (374)
157 PRK08205 sdhA succinate dehydr 99.0 3.7E-09 7.9E-14 110.3 13.1 59 272-330 140-206 (583)
158 PRK05249 soluble pyridine nucl 99.0 4.7E-09 1E-13 107.2 13.4 59 273-333 217-275 (461)
159 TIGR02485 CobZ_N-term precorri 99.0 7.9E-09 1.7E-13 104.4 14.8 58 271-328 122-181 (432)
160 PRK07236 hypothetical protein; 99.0 4.3E-09 9.4E-14 104.8 12.8 62 56-132 5-66 (386)
161 PRK08626 fumarate reductase fl 99.0 2.1E-09 4.6E-14 112.9 10.6 58 272-330 158-220 (657)
162 PRK05329 anaerobic glycerol-3- 99.0 2.7E-09 5.9E-14 105.3 10.7 72 258-330 241-318 (422)
163 PF12831 FAD_oxidored: FAD dep 99.0 7.1E-10 1.5E-14 111.3 6.4 59 277-336 95-156 (428)
164 PRK06069 sdhA succinate dehydr 99.0 1.1E-08 2.3E-13 106.9 15.1 58 272-330 137-200 (577)
165 PTZ00306 NADH-dependent fumara 99.0 9E-09 2E-13 115.2 15.3 44 54-97 406-449 (1167)
166 PRK08071 L-aspartate oxidase; 99.0 1.3E-08 2.7E-13 104.5 14.9 57 272-330 130-190 (510)
167 PRK06116 glutathione reductase 98.9 7.2E-09 1.6E-13 105.4 12.5 57 273-330 209-265 (450)
168 TIGR01811 sdhA_Bsu succinate d 98.9 9.9E-09 2.2E-13 107.0 13.5 58 272-329 129-195 (603)
169 TIGR01421 gluta_reduc_1 glutat 98.9 3.3E-08 7.2E-13 100.1 16.9 60 273-333 208-268 (450)
170 PRK12834 putative FAD-binding 98.9 3.5E-08 7.5E-13 102.5 17.4 42 56-97 3-46 (549)
171 TIGR01176 fum_red_Fp fumarate 98.9 2.2E-08 4.7E-13 104.0 15.8 58 272-330 132-195 (580)
172 PF01134 GIDA: Glucose inhibit 98.9 7.9E-09 1.7E-13 99.4 11.6 56 273-330 96-152 (392)
173 COG2509 Uncharacterized FAD-de 98.9 1E-07 2.2E-12 91.0 18.7 59 271-330 172-230 (486)
174 PRK09231 fumarate reductase fl 98.9 2E-08 4.3E-13 104.6 15.5 58 272-330 133-196 (582)
175 PF13454 NAD_binding_9: FAD-NA 98.9 1.6E-08 3.5E-13 86.3 12.2 49 277-328 106-155 (156)
176 TIGR01350 lipoamide_DH dihydro 98.9 5.4E-09 1.2E-13 106.8 11.0 56 273-330 212-269 (461)
177 PRK06416 dihydrolipoamide dehy 98.9 5E-09 1.1E-13 107.0 10.7 42 56-98 3-44 (462)
178 PRK12831 putative oxidoreducta 98.9 4E-08 8.7E-13 99.6 17.0 44 54-97 137-180 (464)
179 PLN02927 antheraxanthin epoxid 98.9 2.9E-07 6.3E-12 95.4 23.3 36 55-90 79-114 (668)
180 PRK06854 adenylylsulfate reduc 98.9 2.5E-08 5.5E-13 104.3 15.6 58 272-330 132-195 (608)
181 PRK08275 putative oxidoreducta 98.9 3.7E-08 8E-13 102.4 16.8 59 272-330 137-200 (554)
182 TIGR01372 soxA sarcosine oxida 98.9 4.5E-08 9.8E-13 108.1 18.4 43 56-98 162-204 (985)
183 PRK07512 L-aspartate oxidase; 98.9 2.2E-08 4.9E-13 102.7 14.0 59 271-330 135-197 (513)
184 TIGR01292 TRX_reduct thioredox 98.9 1.5E-08 3.1E-13 97.6 12.0 38 58-96 1-38 (300)
185 PRK06753 hypothetical protein; 98.9 6.2E-09 1.4E-13 103.4 9.6 35 58-92 1-35 (373)
186 PRK09897 hypothetical protein; 98.9 1.8E-08 3.9E-13 102.4 12.5 42 57-98 1-45 (534)
187 COG2072 TrkA Predicted flavopr 98.9 3.2E-08 6.9E-13 99.2 14.1 46 53-98 4-50 (443)
188 PRK06115 dihydrolipoamide dehy 98.9 1E-08 2.2E-13 104.4 10.7 42 57-98 3-44 (466)
189 TIGR01316 gltA glutamate synth 98.9 1.2E-07 2.7E-12 95.9 18.5 44 54-97 130-173 (449)
190 PF06039 Mqo: Malate:quinone o 98.9 7.3E-09 1.6E-13 99.6 8.9 63 271-334 180-248 (488)
191 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 5.1E-08 1.1E-12 97.1 14.9 63 57-133 2-64 (390)
192 PRK07251 pyridine nucleotide-d 98.9 7.5E-08 1.6E-12 97.6 16.3 42 57-98 3-45 (438)
193 TIGR03197 MnmC_Cterm tRNA U-34 98.9 4.5E-08 9.8E-13 97.4 14.3 61 271-335 134-194 (381)
194 TIGR01424 gluta_reduc_2 glutat 98.8 9.6E-08 2.1E-12 96.9 16.7 41 57-98 2-42 (446)
195 TIGR00136 gidA glucose-inhibit 98.8 2.6E-08 5.6E-13 101.0 12.0 61 272-333 96-157 (617)
196 TIGR03140 AhpF alkyl hydropero 98.8 1.6E-08 3.5E-13 104.1 10.9 50 278-329 273-322 (515)
197 PRK15317 alkyl hydroperoxide r 98.8 2.1E-08 4.6E-13 103.4 11.4 52 277-330 271-322 (517)
198 PRK09077 L-aspartate oxidase; 98.8 2E-08 4.3E-13 103.8 11.0 59 272-330 138-207 (536)
199 PRK06327 dihydrolipoamide dehy 98.8 1E-07 2.2E-12 97.5 15.8 42 56-97 3-50 (475)
200 KOG2665 Predicted FAD-dependen 98.8 5.8E-08 1.3E-12 87.6 12.0 60 271-330 195-257 (453)
201 PRK07818 dihydrolipoamide dehy 98.8 1.1E-07 2.4E-12 97.1 15.9 41 57-98 4-44 (466)
202 PF00732 GMC_oxred_N: GMC oxid 98.8 3.6E-08 7.9E-13 94.5 11.7 60 276-335 196-263 (296)
203 KOG2614 Kynurenine 3-monooxyge 98.8 6.4E-07 1.4E-11 84.8 19.2 36 57-92 2-37 (420)
204 TIGR03219 salicylate_mono sali 98.8 1.2E-08 2.6E-13 102.8 8.3 59 273-335 106-165 (414)
205 PRK06467 dihydrolipoamide dehy 98.8 1.2E-07 2.6E-12 96.6 15.5 43 56-98 3-45 (471)
206 PRK12769 putative oxidoreducta 98.8 1.9E-07 4.2E-12 99.1 17.5 44 55-98 325-368 (654)
207 PRK08010 pyridine nucleotide-d 98.8 2.6E-08 5.6E-13 101.0 10.1 56 272-330 199-254 (441)
208 PRK06370 mercuric reductase; V 98.8 2.1E-07 4.5E-12 95.0 16.8 42 56-98 4-45 (463)
209 PTZ00367 squalene epoxidase; P 98.8 2.2E-06 4.7E-11 88.4 24.1 64 54-133 30-94 (567)
210 PRK05976 dihydrolipoamide dehy 98.8 1.7E-07 3.8E-12 95.8 16.2 42 56-98 3-44 (472)
211 PRK06475 salicylate hydroxylas 98.8 4.2E-08 9E-13 98.3 11.4 62 273-336 108-174 (400)
212 PRK12775 putative trifunctiona 98.8 1.8E-07 4E-12 102.8 16.9 44 55-98 428-471 (1006)
213 KOG2404 Fumarate reductase, fl 98.8 7.1E-08 1.5E-12 87.3 11.2 40 59-98 11-50 (477)
214 PRK07538 hypothetical protein; 98.8 4.8E-08 1E-12 98.2 11.3 35 58-92 1-35 (413)
215 KOG0042 Glycerol-3-phosphate d 98.8 5.7E-08 1.2E-12 94.0 10.7 76 259-335 211-294 (680)
216 PF00743 FMO-like: Flavin-bind 98.7 1.1E-07 2.4E-12 97.2 13.3 41 58-98 2-42 (531)
217 KOG2852 Possible oxidoreductas 98.7 2.2E-08 4.9E-13 89.1 7.0 64 271-337 146-214 (380)
218 COG3075 GlpB Anaerobic glycero 98.7 3E-07 6.5E-12 83.7 14.1 64 273-337 259-324 (421)
219 COG1249 Lpd Pyruvate/2-oxoglut 98.7 2.7E-07 5.8E-12 91.7 15.1 70 259-330 195-272 (454)
220 COG4716 Myosin-crossreactive a 98.7 2.7E-08 5.8E-13 91.8 7.2 254 56-328 21-290 (587)
221 PRK11749 dihydropyrimidine deh 98.7 8.8E-07 1.9E-11 90.2 19.0 43 55-97 138-180 (457)
222 KOG2415 Electron transfer flav 98.7 3.3E-08 7.1E-13 92.5 7.4 58 271-328 182-254 (621)
223 PTZ00058 glutathione reductase 98.7 1.5E-07 3.2E-12 96.9 12.7 43 55-98 46-88 (561)
224 KOG1399 Flavin-containing mono 98.7 1.8E-07 3.9E-12 92.5 12.5 43 56-98 5-47 (448)
225 TIGR02061 aprA adenosine phosp 98.7 4.9E-07 1.1E-11 93.9 16.4 58 273-330 127-191 (614)
226 PRK12778 putative bifunctional 98.7 3.4E-07 7.3E-12 98.9 15.9 43 55-97 429-471 (752)
227 TIGR03143 AhpF_homolog putativ 98.7 8.2E-08 1.8E-12 99.7 10.1 41 56-97 3-43 (555)
228 PRK10262 thioredoxin reductase 98.7 1.6E-07 3.5E-12 91.0 11.4 43 55-98 4-46 (321)
229 TIGR01318 gltD_gamma_fam gluta 98.7 2.4E-06 5.1E-11 86.9 19.9 43 55-97 139-181 (467)
230 PTZ00052 thioredoxin reductase 98.6 2.5E-07 5.4E-12 94.8 12.5 61 273-335 223-283 (499)
231 COG1252 Ndh NADH dehydrogenase 98.6 4.1E-07 9E-12 88.1 13.0 54 271-330 208-262 (405)
232 PRK12809 putative oxidoreducta 98.6 1.4E-06 3.1E-11 92.1 17.9 43 55-97 308-350 (639)
233 KOG1439 RAB proteins geranylge 98.6 5.5E-07 1.2E-11 84.4 12.1 254 56-326 3-285 (440)
234 KOG1335 Dihydrolipoamide dehyd 98.6 6.2E-07 1.3E-11 83.4 12.3 43 56-98 38-80 (506)
235 TIGR02462 pyranose_ox pyranose 98.6 2.2E-06 4.7E-11 87.3 17.4 37 58-94 1-37 (544)
236 PLN02507 glutathione reductase 98.6 1.9E-06 4E-11 88.4 16.7 44 55-98 23-75 (499)
237 PRK07845 flavoprotein disulfid 98.5 2.9E-06 6.4E-11 86.5 16.8 41 57-98 1-41 (466)
238 PLN02546 glutathione reductase 98.5 2.2E-06 4.7E-11 88.5 15.6 44 55-98 77-129 (558)
239 PRK13800 putative oxidoreducta 98.5 1.7E-06 3.7E-11 95.0 15.0 36 56-91 12-47 (897)
240 PRK12771 putative glutamate sy 98.5 1.5E-05 3.2E-10 83.4 20.5 44 54-97 134-177 (564)
241 COG3573 Predicted oxidoreducta 98.5 1.1E-06 2.5E-11 80.1 10.3 42 56-97 4-47 (552)
242 PRK09754 phenylpropionate diox 98.5 1.7E-06 3.6E-11 86.5 12.4 55 273-330 187-241 (396)
243 PRK02106 choline dehydrogenase 98.5 2E-06 4.3E-11 89.9 13.4 36 56-91 4-40 (560)
244 PF00070 Pyr_redox: Pyridine n 98.5 2.6E-06 5.6E-11 63.5 10.3 33 59-91 1-33 (80)
245 TIGR01810 betA choline dehydro 98.4 4.2E-06 9.2E-11 86.9 15.5 58 276-334 197-259 (532)
246 COG1053 SdhA Succinate dehydro 98.4 2.3E-06 5E-11 87.7 13.0 44 55-98 4-47 (562)
247 COG0029 NadB Aspartate oxidase 98.4 3.5E-06 7.7E-11 81.7 12.5 58 271-328 132-194 (518)
248 PRK14989 nitrite reductase sub 98.3 3.1E-06 6.8E-11 91.5 11.9 57 274-330 189-245 (847)
249 TIGR03377 glycerol3P_GlpA glyc 98.3 2.6E-06 5.7E-11 88.1 10.1 62 271-334 127-193 (516)
250 COG1148 HdrA Heterodisulfide r 98.3 5.9E-07 1.3E-11 86.1 4.8 44 55-98 122-165 (622)
251 TIGR03315 Se_ygfK putative sel 98.3 9.3E-07 2E-11 95.6 6.8 43 56-98 536-578 (1012)
252 PLN02852 ferredoxin-NADP+ redu 98.3 1.2E-06 2.6E-11 88.2 6.8 45 54-98 23-69 (491)
253 KOG1298 Squalene monooxygenase 98.3 1.4E-05 3E-10 74.7 12.8 37 53-89 41-77 (509)
254 KOG0405 Pyridine nucleotide-di 98.3 3.8E-06 8.3E-11 77.2 8.7 48 51-98 14-61 (478)
255 COG4529 Uncharacterized protei 98.3 7.2E-06 1.6E-10 79.8 11.1 40 57-96 1-43 (474)
256 PRK12779 putative bifunctional 98.3 1E-06 2.2E-11 96.1 6.1 43 55-97 304-346 (944)
257 COG0445 GidA Flavin-dependent 98.3 2.3E-06 5E-11 83.8 7.7 56 278-334 106-162 (621)
258 PTZ00318 NADH dehydrogenase-li 98.3 1.4E-05 3.1E-10 80.5 13.8 51 273-329 229-279 (424)
259 PRK13512 coenzyme A disulfide 98.3 2.1E-05 4.6E-10 79.6 15.1 52 273-330 190-241 (438)
260 PRK09564 coenzyme A disulfide 98.2 1.6E-05 3.4E-10 81.0 13.6 56 272-330 191-246 (444)
261 TIGR02374 nitri_red_nirB nitri 98.2 4.5E-06 9.7E-11 90.3 9.9 54 274-329 184-237 (785)
262 TIGR03452 mycothione_red mycot 98.2 2.1E-05 4.5E-10 79.9 13.9 40 56-98 1-40 (452)
263 PRK09853 putative selenate red 98.2 2.5E-06 5.5E-11 91.9 6.3 44 55-98 537-580 (1019)
264 COG0492 TrxB Thioredoxin reduc 98.2 2.2E-06 4.8E-11 81.0 5.1 43 56-98 2-44 (305)
265 PRK06292 dihydrolipoamide dehy 98.1 2.3E-06 5.1E-11 87.4 5.2 41 56-97 2-42 (460)
266 PF07156 Prenylcys_lyase: Pren 98.1 7.3E-05 1.6E-09 72.5 14.5 114 206-330 69-187 (368)
267 PRK14694 putative mercuric red 98.1 3.7E-06 8E-11 85.9 5.7 59 273-334 219-277 (468)
268 COG5044 MRS6 RAB proteins gera 98.1 0.00021 4.5E-09 66.7 16.2 248 56-325 5-279 (434)
269 TIGR02053 MerA mercuric reduct 98.1 3.4E-06 7.5E-11 86.2 5.2 39 58-97 1-39 (463)
270 PRK07846 mycothione reductase; 98.1 5.2E-05 1.1E-09 76.9 13.7 39 57-98 1-39 (451)
271 PTZ00188 adrenodoxin reductase 98.1 6.4E-06 1.4E-10 81.7 6.4 43 56-98 38-81 (506)
272 PRK14727 putative mercuric red 98.1 5.3E-06 1.2E-10 84.9 6.1 44 55-98 14-57 (479)
273 PRK06567 putative bifunctional 98.1 6E-06 1.3E-10 88.0 6.2 42 54-95 380-421 (1028)
274 PRK12810 gltD glutamate syntha 98.0 7.1E-06 1.5E-10 83.8 6.6 43 55-97 141-183 (471)
275 PRK13748 putative mercuric red 98.0 4.5E-06 9.8E-11 87.6 5.2 57 273-332 311-367 (561)
276 KOG4405 GDP dissociation inhib 98.0 0.00015 3.2E-09 68.4 14.2 120 202-326 218-341 (547)
277 PRK05335 tRNA (uracil-5-)-meth 98.0 7E-06 1.5E-10 80.1 5.3 36 57-92 2-37 (436)
278 PRK12814 putative NADPH-depend 98.0 1E-05 2.3E-10 85.7 6.7 43 55-97 191-233 (652)
279 TIGR03169 Nterm_to_SelD pyridi 98.0 5.5E-05 1.2E-09 74.8 11.5 52 273-330 192-243 (364)
280 TIGR01789 lycopene_cycl lycope 98.0 6.9E-06 1.5E-10 80.8 4.8 37 59-95 1-39 (370)
281 TIGR01423 trypano_reduc trypan 98.0 7.8E-06 1.7E-10 83.3 5.3 58 272-330 231-288 (486)
282 COG0493 GltD NADPH-dependent g 97.9 1.8E-05 4E-10 78.9 6.0 43 56-98 122-164 (457)
283 KOG1336 Monodehydroascorbate/f 97.9 0.00012 2.6E-09 71.0 11.1 65 272-336 255-319 (478)
284 PTZ00153 lipoamide dehydrogena 97.9 1.5E-05 3.2E-10 83.6 5.3 42 57-98 116-158 (659)
285 PRK04965 NADH:flavorubredoxin 97.9 0.00012 2.6E-09 72.7 11.6 51 278-330 189-239 (377)
286 TIGR01317 GOGAT_sm_gam glutama 97.9 2.5E-05 5.4E-10 79.9 6.7 42 56-97 142-183 (485)
287 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.7E-05 3.8E-10 77.9 5.0 37 58-94 1-37 (433)
288 PF07992 Pyr_redox_2: Pyridine 97.8 2.2E-05 4.7E-10 70.5 4.9 33 59-91 1-33 (201)
289 PRK05976 dihydrolipoamide dehy 97.8 0.00023 5E-09 72.9 12.7 34 58-91 181-214 (472)
290 KOG2960 Protein involved in th 97.8 6.9E-06 1.5E-10 70.0 1.1 66 56-132 75-144 (328)
291 KOG0399 Glutamate synthase [Am 97.8 2.8E-05 6E-10 81.8 5.6 45 54-98 1782-1826(2142)
292 PRK12770 putative glutamate sy 97.8 5E-05 1.1E-09 74.6 6.5 43 56-98 17-59 (352)
293 TIGR01438 TGR thioredoxin and 97.7 3.4E-05 7.5E-10 78.8 5.1 60 272-333 220-282 (484)
294 PRK06912 acoL dihydrolipoamide 97.7 4.4E-05 9.5E-10 77.9 5.2 55 273-330 212-268 (458)
295 PRK13984 putative oxidoreducta 97.7 6.3E-05 1.4E-09 79.5 6.5 43 55-97 281-323 (604)
296 TIGR01424 gluta_reduc_2 glutat 97.7 0.00047 1E-08 70.1 12.0 49 280-330 215-263 (446)
297 TIGR02053 MerA mercuric reduct 97.6 0.00055 1.2E-08 70.1 12.1 33 58-90 167-199 (463)
298 TIGR01423 trypano_reduc trypan 97.6 0.0007 1.5E-08 69.2 12.7 36 57-92 187-225 (486)
299 PLN02507 glutathione reductase 97.6 0.00058 1.3E-08 70.2 12.1 50 279-330 251-300 (499)
300 KOG2311 NAD/FAD-utilizing prot 97.6 0.00029 6.4E-09 67.9 9.0 41 55-95 26-67 (679)
301 PRK07845 flavoprotein disulfid 97.6 0.00056 1.2E-08 69.9 11.8 50 279-330 225-274 (466)
302 PRK08255 salicylyl-CoA 5-hydro 97.6 6.6E-05 1.4E-09 81.2 5.0 34 58-91 1-36 (765)
303 COG0446 HcaD Uncharacterized N 97.6 0.00056 1.2E-08 69.0 11.4 39 57-95 136-174 (415)
304 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.0008 1.7E-08 68.1 12.4 48 279-330 186-233 (427)
305 PF13434 K_oxygenase: L-lysine 97.6 0.00018 3.9E-09 69.7 7.0 35 57-91 2-37 (341)
306 TIGR03862 flavo_PP4765 unchara 97.5 0.00058 1.3E-08 66.5 9.9 56 271-330 85-141 (376)
307 PRK05675 sdhA succinate dehydr 97.5 0.00072 1.6E-08 70.6 11.1 59 272-330 126-189 (570)
308 KOG0404 Thioredoxin reductase 97.5 0.00081 1.8E-08 58.3 8.9 61 273-338 71-132 (322)
309 PRK06327 dihydrolipoamide dehy 97.5 0.0011 2.4E-08 67.9 11.8 33 58-90 184-216 (475)
310 KOG1800 Ferredoxin/adrenodoxin 97.5 0.00019 4E-09 67.3 5.4 43 56-98 19-63 (468)
311 PRK07846 mycothione reductase; 97.4 0.0012 2.6E-08 67.1 11.6 49 285-335 219-267 (451)
312 PRK06912 acoL dihydrolipoamide 97.4 0.0014 3.1E-08 66.8 12.2 34 58-91 171-204 (458)
313 COG2303 BetA Choline dehydroge 97.4 0.00016 3.5E-09 74.8 4.6 36 55-90 5-40 (542)
314 COG3634 AhpF Alkyl hydroperoxi 97.3 0.00051 1.1E-08 63.6 5.9 62 276-338 270-333 (520)
315 PRK14727 putative mercuric red 97.3 0.0024 5.2E-08 65.5 11.5 52 279-333 235-286 (479)
316 TIGR03452 mycothione_red mycot 97.3 0.0028 6.1E-08 64.5 11.8 49 285-335 222-270 (452)
317 PLN02546 glutathione reductase 97.2 0.0033 7.2E-08 65.2 12.3 54 279-333 300-353 (558)
318 PRK06467 dihydrolipoamide dehy 97.2 0.0033 7.1E-08 64.4 11.9 34 58-91 175-208 (471)
319 PRK14694 putative mercuric red 97.2 0.0035 7.5E-08 64.2 11.9 32 58-89 179-210 (468)
320 PRK13748 putative mercuric red 97.2 0.0032 6.9E-08 66.2 11.9 32 58-89 271-302 (561)
321 PLN02785 Protein HOTHEAD 97.2 0.00049 1.1E-08 71.7 5.3 37 53-90 51-87 (587)
322 PTZ00153 lipoamide dehydrogena 97.2 0.0037 8.1E-08 65.8 11.8 34 58-91 313-346 (659)
323 TIGR01438 TGR thioredoxin and 97.1 0.0039 8.4E-08 63.9 11.4 31 58-88 181-211 (484)
324 PRK06292 dihydrolipoamide dehy 97.0 0.0078 1.7E-07 61.6 12.4 34 57-90 169-202 (460)
325 KOG3855 Monooxygenase involved 97.0 0.0019 4.1E-08 61.6 6.6 46 285-330 166-217 (481)
326 KOG4716 Thioredoxin reductase 96.8 0.0013 2.7E-08 60.8 3.8 61 271-332 237-302 (503)
327 PF13434 K_oxygenase: L-lysine 96.7 0.017 3.7E-07 56.0 11.4 36 54-89 187-224 (341)
328 COG1206 Gid NAD(FAD)-utilizing 96.7 0.0016 3.4E-08 60.1 3.8 34 58-91 4-37 (439)
329 COG1251 NirB NAD(P)H-nitrite r 96.7 0.0045 9.7E-08 63.6 7.1 53 276-330 191-243 (793)
330 PRK04965 NADH:flavorubredoxin 96.5 0.0033 7.1E-08 62.5 4.8 33 58-90 3-37 (377)
331 COG1249 Lpd Pyruvate/2-oxoglut 96.2 0.0093 2E-07 59.8 6.1 38 57-94 173-210 (454)
332 PRK09754 phenylpropionate diox 96.2 0.0086 1.9E-07 59.9 5.9 39 57-95 144-182 (396)
333 PF01210 NAD_Gly3P_dh_N: NAD-d 96.1 0.0059 1.3E-07 52.0 3.9 32 59-90 1-32 (157)
334 KOG1238 Glucose dehydrogenase/ 96.1 0.0064 1.4E-07 61.8 4.5 39 54-92 54-93 (623)
335 KOG3923 D-aspartate oxidase [A 95.9 0.0068 1.5E-07 55.3 3.4 52 272-338 151-202 (342)
336 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.011 2.3E-07 51.7 4.3 31 59-89 1-31 (180)
337 PRK01438 murD UDP-N-acetylmura 95.8 0.011 2.5E-07 60.7 5.2 34 57-90 16-49 (480)
338 PF03721 UDPG_MGDP_dh_N: UDP-g 95.8 0.0088 1.9E-07 52.4 3.6 34 58-91 1-34 (185)
339 KOG1346 Programmed cell death 95.8 0.025 5.4E-07 54.0 6.4 63 272-336 393-455 (659)
340 COG3486 IucD Lysine/ornithine 95.7 0.2 4.4E-06 48.3 12.4 37 55-91 3-40 (436)
341 PRK06370 mercuric reductase; V 95.7 0.022 4.8E-07 58.3 6.5 36 57-92 171-206 (463)
342 PRK02705 murD UDP-N-acetylmura 95.6 0.015 3.2E-07 59.5 4.7 33 59-91 2-34 (459)
343 PRK07251 pyridine nucleotide-d 95.5 0.021 4.5E-07 58.1 5.5 35 58-92 158-192 (438)
344 COG0569 TrkA K+ transport syst 95.5 0.02 4.4E-07 51.9 4.6 67 58-133 1-67 (225)
345 PF02558 ApbA: Ketopantoate re 95.4 0.019 4.1E-07 48.6 4.0 31 60-90 1-31 (151)
346 PRK05249 soluble pyridine nucl 95.3 0.032 6.9E-07 57.1 6.0 37 57-93 175-211 (461)
347 PF01262 AlaDh_PNT_C: Alanine 95.3 0.03 6.6E-07 48.3 4.9 34 56-89 19-52 (168)
348 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.024 5.3E-07 54.4 4.7 33 58-90 3-35 (308)
349 TIGR01350 lipoamide_DH dihydro 95.2 0.027 5.9E-07 57.6 5.1 36 58-93 171-206 (461)
350 TIGR01421 gluta_reduc_1 glutat 95.1 0.033 7.2E-07 56.6 5.3 36 58-93 167-202 (450)
351 PRK12831 putative oxidoreducta 95.1 0.054 1.2E-06 55.3 6.8 34 56-89 280-313 (464)
352 TIGR01316 gltA glutamate synth 95.0 0.059 1.3E-06 54.8 7.0 34 56-89 271-304 (449)
353 PF13738 Pyr_redox_3: Pyridine 95.0 0.03 6.4E-07 50.1 4.3 35 56-90 166-200 (203)
354 PRK06115 dihydrolipoamide dehy 95.0 0.038 8.2E-07 56.6 5.5 35 57-91 174-208 (466)
355 COG1004 Ugd Predicted UDP-gluc 94.9 0.033 7.2E-07 53.4 4.3 33 58-90 1-33 (414)
356 PRK13512 coenzyme A disulfide 94.8 0.036 7.8E-07 56.2 4.8 36 58-93 149-184 (438)
357 PRK06416 dihydrolipoamide dehy 94.8 0.039 8.6E-07 56.5 5.1 34 58-91 173-206 (462)
358 PRK07818 dihydrolipoamide dehy 94.7 0.044 9.5E-07 56.2 5.2 34 58-91 173-206 (466)
359 cd01080 NAD_bind_m-THF_DH_Cycl 94.7 0.054 1.2E-06 46.4 4.9 35 55-89 42-77 (168)
360 TIGR02374 nitri_red_nirB nitri 94.7 0.046 9.9E-07 59.7 5.6 36 57-92 140-175 (785)
361 PRK07066 3-hydroxybutyryl-CoA 94.7 0.054 1.2E-06 51.8 5.3 34 57-90 7-40 (321)
362 COG0686 Ald Alanine dehydrogen 94.7 0.037 8E-07 51.0 3.9 35 55-89 166-200 (371)
363 TIGR01470 cysG_Nterm siroheme 94.6 0.056 1.2E-06 48.2 5.0 33 57-89 9-41 (205)
364 PF01488 Shikimate_DH: Shikima 94.6 0.079 1.7E-06 43.7 5.5 34 56-89 11-45 (135)
365 KOG2755 Oxidoreductase [Genera 94.6 0.027 5.8E-07 50.5 2.7 32 60-91 2-35 (334)
366 PRK14106 murD UDP-N-acetylmura 94.6 0.049 1.1E-06 55.6 5.1 34 57-90 5-38 (450)
367 PRK06249 2-dehydropantoate 2-r 94.4 0.066 1.4E-06 51.6 5.4 34 56-89 4-37 (313)
368 PRK07819 3-hydroxybutyryl-CoA 94.4 0.056 1.2E-06 51.1 4.7 34 58-91 6-39 (286)
369 PF13241 NAD_binding_7: Putati 94.4 0.04 8.6E-07 43.1 3.1 34 56-89 6-39 (103)
370 PRK08293 3-hydroxybutyryl-CoA 94.3 0.057 1.2E-06 51.3 4.6 33 58-90 4-36 (287)
371 PRK09260 3-hydroxybutyryl-CoA 94.2 0.061 1.3E-06 51.1 4.6 33 58-90 2-34 (288)
372 TIGR03140 AhpF alkyl hydropero 94.2 0.065 1.4E-06 55.6 5.1 34 57-90 352-385 (515)
373 PRK09564 coenzyme A disulfide 94.1 0.079 1.7E-06 54.0 5.5 36 57-92 149-184 (444)
374 PTZ00058 glutathione reductase 94.0 0.076 1.6E-06 55.3 5.1 35 57-91 237-271 (561)
375 PRK04148 hypothetical protein; 94.0 0.062 1.4E-06 43.6 3.5 34 57-91 17-50 (134)
376 KOG3851 Sulfide:quinone oxidor 94.0 0.055 1.2E-06 50.0 3.6 38 54-91 36-75 (446)
377 TIGR01816 sdhA_forward succina 94.0 0.14 3.1E-06 53.6 7.2 58 272-330 119-181 (565)
378 PRK06718 precorrin-2 dehydroge 94.0 0.098 2.1E-06 46.6 5.1 34 56-89 9-42 (202)
379 PRK05708 2-dehydropantoate 2-r 93.9 0.085 1.8E-06 50.5 5.0 33 57-89 2-34 (305)
380 PRK12778 putative bifunctional 93.9 0.14 3E-06 55.9 7.0 34 56-89 569-603 (752)
381 PRK06719 precorrin-2 dehydroge 93.9 0.11 2.3E-06 44.2 4.9 32 56-87 12-43 (157)
382 cd05292 LDH_2 A subgroup of L- 93.8 0.091 2E-06 50.3 4.8 33 58-90 1-35 (308)
383 PRK07530 3-hydroxybutyryl-CoA 93.8 0.089 1.9E-06 50.1 4.8 32 58-89 5-36 (292)
384 PRK06522 2-dehydropantoate 2-r 93.7 0.088 1.9E-06 50.5 4.7 32 58-89 1-32 (304)
385 TIGR02354 thiF_fam2 thiamine b 93.7 0.1 2.2E-06 46.4 4.7 34 56-89 20-54 (200)
386 PRK10262 thioredoxin reductase 93.7 0.099 2.1E-06 50.6 5.1 35 56-90 145-179 (321)
387 PRK14989 nitrite reductase sub 93.7 0.09 1.9E-06 57.6 5.1 36 57-92 145-180 (847)
388 PRK12921 2-dehydropantoate 2-r 93.6 0.098 2.1E-06 50.2 4.8 31 58-88 1-31 (305)
389 PF00899 ThiF: ThiF family; I 93.6 0.089 1.9E-06 43.5 3.9 35 57-91 2-37 (135)
390 TIGR00518 alaDH alanine dehydr 93.6 0.11 2.3E-06 51.2 5.0 34 56-89 166-199 (370)
391 PRK06116 glutathione reductase 93.5 0.11 2.3E-06 53.1 5.2 36 57-92 167-202 (450)
392 TIGR03143 AhpF_homolog putativ 93.5 0.099 2.1E-06 54.7 5.0 36 56-91 142-177 (555)
393 PRK12770 putative glutamate sy 93.5 0.11 2.5E-06 50.9 5.1 33 57-89 172-205 (352)
394 TIGR01763 MalateDH_bact malate 93.5 0.13 2.7E-06 49.2 5.2 32 58-89 2-34 (305)
395 PRK15317 alkyl hydroperoxide r 93.4 0.11 2.3E-06 54.0 5.1 35 56-90 350-384 (517)
396 PRK08010 pyridine nucleotide-d 93.4 0.12 2.7E-06 52.5 5.4 35 58-92 159-193 (441)
397 PRK08229 2-dehydropantoate 2-r 93.4 0.11 2.4E-06 50.8 4.9 32 58-89 3-34 (341)
398 PRK06035 3-hydroxyacyl-CoA deh 93.4 0.1 2.2E-06 49.6 4.5 33 58-90 4-36 (291)
399 PRK05808 3-hydroxybutyryl-CoA 93.2 0.13 2.7E-06 48.8 4.8 33 58-90 4-36 (282)
400 KOG2304 3-hydroxyacyl-CoA dehy 93.1 0.11 2.3E-06 45.6 3.6 39 53-91 7-45 (298)
401 TIGR01292 TRX_reduct thioredox 93.0 0.14 3.1E-06 48.9 5.0 34 56-89 140-173 (300)
402 PTZ00052 thioredoxin reductase 93.0 0.15 3.3E-06 52.6 5.4 32 58-89 183-214 (499)
403 PF00056 Ldh_1_N: lactate/mala 93.0 0.19 4.2E-06 41.7 5.0 33 58-90 1-36 (141)
404 PRK04690 murD UDP-N-acetylmura 92.9 0.13 2.8E-06 52.5 4.7 35 57-91 8-42 (468)
405 PRK11064 wecC UDP-N-acetyl-D-m 92.9 0.13 2.8E-06 51.5 4.6 35 57-91 3-37 (415)
406 TIGR03026 NDP-sugDHase nucleot 92.9 0.12 2.6E-06 51.9 4.3 34 58-91 1-34 (411)
407 cd05311 NAD_bind_2_malic_enz N 92.8 0.18 3.9E-06 45.8 4.9 34 56-89 24-60 (226)
408 COG0771 MurD UDP-N-acetylmuram 92.8 0.12 2.7E-06 51.4 4.2 36 57-92 7-42 (448)
409 PRK14619 NAD(P)H-dependent gly 92.8 0.18 4E-06 48.4 5.3 35 56-90 3-37 (308)
410 PRK06130 3-hydroxybutyryl-CoA 92.8 0.17 3.8E-06 48.7 5.1 34 57-90 4-37 (311)
411 COG1748 LYS9 Saccharopine dehy 92.8 0.15 3.4E-06 49.6 4.7 33 57-89 1-34 (389)
412 PF03446 NAD_binding_2: NAD bi 92.7 0.18 3.8E-06 43.3 4.6 34 57-90 1-34 (163)
413 PLN02545 3-hydroxybutyryl-CoA 92.7 0.17 3.7E-06 48.3 5.0 33 58-90 5-37 (295)
414 PRK00094 gpsA NAD(P)H-dependen 92.6 0.16 3.4E-06 49.3 4.7 32 58-89 2-33 (325)
415 cd05293 LDH_1 A subgroup of L- 92.6 0.2 4.4E-06 47.9 5.2 35 56-90 2-38 (312)
416 PRK14618 NAD(P)H-dependent gly 92.6 0.2 4.3E-06 48.7 5.3 34 57-90 4-37 (328)
417 COG3634 AhpF Alkyl hydroperoxi 92.5 0.12 2.6E-06 48.5 3.4 36 54-89 351-386 (520)
418 PRK01710 murD UDP-N-acetylmura 92.5 0.16 3.6E-06 51.8 4.8 34 57-90 14-47 (458)
419 PRK15116 sulfur acceptor prote 92.5 0.2 4.2E-06 46.5 4.8 35 56-90 29-64 (268)
420 PRK09424 pntA NAD(P) transhydr 92.5 0.17 3.6E-06 51.6 4.8 35 55-89 163-197 (509)
421 PRK14620 NAD(P)H-dependent gly 92.3 0.2 4.3E-06 48.6 4.8 32 58-89 1-32 (326)
422 cd05191 NAD_bind_amino_acid_DH 92.2 0.37 8.1E-06 36.1 5.2 33 56-88 22-55 (86)
423 PLN02353 probable UDP-glucose 92.2 0.19 4.1E-06 51.0 4.7 34 57-90 1-36 (473)
424 PF02254 TrkA_N: TrkA-N domain 92.2 0.22 4.8E-06 39.8 4.3 32 60-91 1-32 (116)
425 PRK11749 dihydropyrimidine deh 92.1 0.22 4.7E-06 50.9 5.2 34 56-89 272-306 (457)
426 COG1252 Ndh NADH dehydrogenase 92.0 0.12 2.6E-06 50.8 2.9 61 56-133 154-227 (405)
427 cd01075 NAD_bind_Leu_Phe_Val_D 92.0 0.27 5.8E-06 43.7 5.0 34 56-89 27-60 (200)
428 PRK03369 murD UDP-N-acetylmura 92.0 0.21 4.6E-06 51.4 4.9 33 57-89 12-44 (488)
429 PTZ00318 NADH dehydrogenase-li 91.9 0.23 5E-06 50.2 5.0 35 58-92 174-222 (424)
430 PRK00421 murC UDP-N-acetylmura 91.9 0.21 4.6E-06 51.1 4.7 38 54-91 4-42 (461)
431 PRK12549 shikimate 5-dehydroge 91.9 0.25 5.5E-06 46.6 4.9 34 56-89 126-160 (284)
432 PRK08644 thiamine biosynthesis 91.8 0.27 5.9E-06 44.1 4.8 35 56-90 27-62 (212)
433 PRK04308 murD UDP-N-acetylmura 91.8 0.25 5.4E-06 50.3 5.1 35 57-91 5-39 (445)
434 PRK02472 murD UDP-N-acetylmura 91.8 0.23 5E-06 50.6 4.8 34 57-90 5-38 (447)
435 PRK06223 malate dehydrogenase; 91.6 0.29 6.3E-06 47.0 5.1 34 57-90 2-36 (307)
436 cd01487 E1_ThiF_like E1_ThiF_l 91.6 0.28 6.2E-06 42.5 4.5 32 59-90 1-33 (174)
437 PRK12475 thiamine/molybdopteri 91.6 0.26 5.7E-06 47.7 4.8 35 56-90 23-58 (338)
438 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.5 0.27 5.8E-06 50.5 4.9 34 57-90 5-38 (503)
439 PRK15057 UDP-glucose 6-dehydro 91.4 0.24 5.3E-06 49.0 4.4 33 58-91 1-33 (388)
440 PRK08306 dipicolinate synthase 91.3 0.33 7.2E-06 46.1 5.1 35 56-90 151-185 (296)
441 TIGR02356 adenyl_thiF thiazole 91.3 0.34 7.3E-06 43.2 4.8 34 56-89 20-54 (202)
442 PRK07688 thiamine/molybdopteri 91.2 0.32 6.8E-06 47.2 4.9 35 56-90 23-58 (339)
443 TIGR02355 moeB molybdopterin s 91.2 0.33 7.1E-06 44.5 4.7 36 56-91 23-59 (240)
444 PTZ00082 L-lactate dehydrogena 91.2 0.35 7.6E-06 46.5 5.1 35 57-91 6-41 (321)
445 KOG2495 NADH-dehydrogenase (ub 91.2 0.096 2.1E-06 50.6 1.2 34 59-92 220-267 (491)
446 cd00401 AdoHcyase S-adenosyl-L 91.2 0.33 7.2E-06 48.1 5.0 35 56-90 201-235 (413)
447 KOG1336 Monodehydroascorbate/f 91.1 0.45 9.8E-06 46.9 5.8 69 18-92 180-248 (478)
448 PRK07531 bifunctional 3-hydrox 91.1 0.27 5.9E-06 50.6 4.6 33 58-90 5-37 (495)
449 TIGR00561 pntA NAD(P) transhyd 91.1 0.3 6.6E-06 49.6 4.8 34 56-89 163-196 (511)
450 PRK08268 3-hydroxy-acyl-CoA de 91.0 0.31 6.7E-06 50.1 4.9 35 57-91 7-41 (507)
451 PRK01368 murD UDP-N-acetylmura 91.0 0.27 5.8E-06 50.0 4.4 32 57-89 6-37 (454)
452 PRK05690 molybdopterin biosynt 91.0 0.36 7.9E-06 44.4 4.9 34 56-89 31-65 (245)
453 PRK00141 murD UDP-N-acetylmura 90.9 0.31 6.8E-06 49.9 4.8 33 57-89 15-47 (473)
454 PRK07417 arogenate dehydrogena 90.7 0.3 6.4E-06 46.2 4.1 32 58-89 1-32 (279)
455 cd05291 HicDH_like L-2-hydroxy 90.7 0.37 8.1E-06 46.2 4.8 32 59-90 2-35 (306)
456 PRK12810 gltD glutamate syntha 90.7 0.63 1.4E-05 47.7 6.8 40 479-520 427-466 (471)
457 cd01483 E1_enzyme_family Super 90.6 0.4 8.8E-06 40.0 4.5 33 59-91 1-34 (143)
458 PRK08328 hypothetical protein; 90.6 0.39 8.4E-06 43.8 4.7 34 56-89 26-60 (231)
459 cd01078 NAD_bind_H4MPT_DH NADP 90.6 0.45 9.8E-06 42.1 5.0 34 56-89 27-61 (194)
460 COG2072 TrkA Predicted flavopr 90.5 0.47 1E-05 48.0 5.6 37 54-90 172-208 (443)
461 cd00757 ThiF_MoeB_HesA_family 90.5 0.4 8.7E-06 43.7 4.7 34 56-89 20-54 (228)
462 TIGR01915 npdG NADPH-dependent 90.5 0.41 8.8E-06 43.4 4.7 32 58-89 1-33 (219)
463 PRK11730 fadB multifunctional 90.5 0.37 8E-06 52.0 5.0 35 57-91 313-347 (715)
464 TIGR02853 spore_dpaA dipicolin 90.5 0.4 8.7E-06 45.3 4.7 35 56-90 150-184 (287)
465 COG1893 ApbA Ketopantoate redu 90.4 0.34 7.3E-06 46.3 4.2 32 58-89 1-32 (307)
466 TIGR02437 FadB fatty oxidation 90.2 0.41 8.9E-06 51.5 5.1 36 56-91 312-347 (714)
467 PLN02256 arogenate dehydrogena 90.2 0.95 2.1E-05 43.2 7.0 34 56-89 35-68 (304)
468 COG1250 FadB 3-hydroxyacyl-CoA 90.2 0.38 8.2E-06 45.4 4.2 33 57-89 3-35 (307)
469 PRK12779 putative bifunctional 90.1 0.4 8.7E-06 53.2 5.1 35 56-90 446-480 (944)
470 PLN02172 flavin-containing mon 90.1 0.35 7.7E-06 49.2 4.3 35 55-89 202-236 (461)
471 COG0281 SfcA Malic enzyme [Ene 90.1 0.48 1E-05 46.0 4.8 36 55-90 197-235 (432)
472 PRK05562 precorrin-2 dehydroge 90.0 0.54 1.2E-05 42.2 4.8 32 56-87 24-55 (223)
473 PRK02006 murD UDP-N-acetylmura 90.0 0.4 8.7E-06 49.6 4.7 34 57-90 7-40 (498)
474 PRK00066 ldh L-lactate dehydro 90.0 0.53 1.2E-05 45.2 5.2 34 56-89 5-40 (315)
475 PF10727 Rossmann-like: Rossma 89.9 0.21 4.5E-06 40.5 2.0 37 54-90 7-43 (127)
476 TIGR00507 aroE shikimate 5-deh 89.8 0.52 1.1E-05 44.3 4.9 34 56-89 116-149 (270)
477 cd05290 LDH_3 A subgroup of L- 89.7 0.47 1E-05 45.3 4.5 31 59-89 1-33 (307)
478 PRK12548 shikimate 5-dehydroge 89.7 0.61 1.3E-05 44.2 5.3 34 56-89 125-159 (289)
479 cd01339 LDH-like_MDH L-lactate 89.5 0.42 9.1E-06 45.7 4.1 31 60-90 1-32 (300)
480 PF13478 XdhC_C: XdhC Rossmann 89.5 0.42 9.1E-06 39.3 3.5 31 60-90 1-31 (136)
481 KOG1335 Dihydrolipoamide dehyd 89.4 0.22 4.8E-06 47.5 2.0 40 56-95 210-249 (506)
482 PTZ00117 malate dehydrogenase; 89.4 0.61 1.3E-05 44.9 5.1 35 56-90 4-39 (319)
483 COG1251 NirB NAD(P)H-nitrite r 89.4 0.51 1.1E-05 49.2 4.7 45 282-330 69-113 (793)
484 PRK09496 trkA potassium transp 89.2 0.49 1.1E-05 48.3 4.6 34 58-91 1-34 (453)
485 TIGR02441 fa_ox_alpha_mit fatt 89.1 0.57 1.2E-05 50.6 5.1 35 56-90 334-368 (737)
486 cd01485 E1-1_like Ubiquitin ac 89.1 0.61 1.3E-05 41.4 4.5 36 56-91 18-54 (198)
487 cd01065 NAD_bind_Shikimate_DH 89.0 0.74 1.6E-05 38.9 5.0 34 56-89 18-52 (155)
488 TIGR03169 Nterm_to_SelD pyridi 89.0 0.45 9.8E-06 47.0 4.1 48 278-330 60-107 (364)
489 cd00755 YgdL_like Family of ac 88.9 0.64 1.4E-05 42.2 4.6 36 56-91 10-46 (231)
490 TIGR00936 ahcY adenosylhomocys 88.9 0.65 1.4E-05 45.9 5.0 35 56-90 194-228 (406)
491 cd01492 Aos1_SUMO Ubiquitin ac 88.9 0.63 1.4E-05 41.3 4.4 34 56-89 20-54 (197)
492 PRK12814 putative NADPH-depend 88.7 0.66 1.4E-05 49.6 5.3 35 56-90 322-357 (652)
493 PF00670 AdoHcyase_NAD: S-aden 88.6 0.67 1.5E-05 39.1 4.2 36 56-91 22-57 (162)
494 PRK08223 hypothetical protein; 88.6 0.67 1.5E-05 43.3 4.6 36 56-91 26-62 (287)
495 PRK06153 hypothetical protein; 88.6 0.37 8.1E-06 46.7 3.0 34 56-89 175-209 (393)
496 cd01337 MDH_glyoxysomal_mitoch 88.6 0.79 1.7E-05 43.7 5.1 32 58-89 1-35 (310)
497 PRK00258 aroE shikimate 5-dehy 88.5 0.74 1.6E-05 43.4 5.0 34 56-89 122-156 (278)
498 PRK03803 murD UDP-N-acetylmura 88.4 0.67 1.4E-05 47.2 5.0 35 56-90 5-39 (448)
499 TIGR01505 tartro_sem_red 2-hyd 88.4 0.51 1.1E-05 44.9 3.9 32 59-90 1-32 (291)
500 PRK11154 fadJ multifunctional 88.4 0.89 1.9E-05 49.1 6.1 35 56-90 308-343 (708)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.4e-59 Score=481.79 Aligned_cols=513 Identities=87% Similarity=1.404 Sum_probs=420.8
Q ss_pred CCCCceeeeccCCCCCcccccchhhhhhhcCCCCCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCce
Q 009372 16 GFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~ 95 (536)
+.+|+++.|+.+|.|.++.+..|.............+......+|+|||||++||+||++|++.|++|+|+|+++++||+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 52 GRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCceEEecCCCCCchhhHHHHHhhhhhccccccCCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 44689999999999999999999876654444444455556789999999999999999999999999999999999999
Q ss_pred eeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcC
Q 009372 96 IAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN 175 (536)
Q Consensus 96 ~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (536)
+.++...+|+.+|.|.|++.+.++++.++++++|+.....+......+.+....+.+..+.++...|.++..+..++...
T Consensus 132 ~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~ 211 (567)
T PLN02612 132 VAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNN 211 (567)
T ss_pred ceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcC
Confidence 99976557899999999999999999999999999887777777777666555555555555554666666677777666
Q ss_pred CCCChhHHHHhhcccchhhhcccccccccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHh
Q 009372 176 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL 255 (536)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (536)
..+.+.++++....+.+......++....++.|+.+|+++.+.++.+.++++.++....++.+++++|+...+..+..++
T Consensus 212 ~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l 291 (567)
T PLN02612 212 EMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL 291 (567)
T ss_pred ccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH
Confidence 66778887776555444333333444556789999999999999999999999998888889999999999888777776
Q ss_pred hhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009372 256 QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 256 ~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll 335 (536)
....+....+..|+.+..+++.|.+.+++.|++|++|++|++|..++++++++|++.+|+++.||+||+|+|+..+..|+
T Consensus 292 ~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll 371 (567)
T PLN02612 292 QEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLL 371 (567)
T ss_pred hccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhC
Confidence 66677788888887558899999999999999999999999999876776767888889889999999999999999998
Q ss_pred CCcchhcHHHHHHhccCCccEEEEEEEeeeccccCcccccccCccccccCCcceeeeccccCcccccCCCccEEEEEEec
Q 009372 336 PENWKEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP 415 (536)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 415 (536)
++...+..+.+.++.+.+.++++++++ |++++|.. .++.++..++..+++.+++...+.+.+++..++.+++.+
T Consensus 372 ~~~~~~~~~~~~l~~l~~~~v~~v~l~--~dr~~~~~----~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~ 445 (567)
T PLN02612 372 PDQWKEIPYFKKLDKLVGVPVINVHIW--FDRKLKNT----YDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAP 445 (567)
T ss_pred cchhcCcHHHHHHHhcCCCCeEEEEEE--ECcccCCC----CCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEc
Confidence 875545566677777888899999888 66665543 344555556666677777766667777777777777777
Q ss_pred chhhccCChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCCCCCCCCCCCCeEEecccccCC
Q 009372 416 AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQK 495 (536)
Q Consensus 416 ~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~ 495 (536)
+.+|..+++|++++.++++|+++||.....+.....+..+.+..+|++.+...++...+++.+++|++|||||||++.++
T Consensus 446 a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~ 525 (567)
T PLN02612 446 AEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQK 525 (567)
T ss_pred ChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCC
Confidence 78999999999999999999999997544433455688889999999999888887777888899999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccccCC
Q 009372 496 YLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 534 (536)
Q Consensus 496 ~~~~i~gA~~SG~~aA~~ll~~l~~~~~~~~~~~~~~~~ 534 (536)
|+++++||+.||++||++|++.++..+...+++++|++.
T Consensus 526 ~~~smeGAv~SG~~AA~~I~~~~~~~~~~~~~~~~~~~~ 564 (567)
T PLN02612 526 YLASMEGAVLSGKLCAQSIVQDYELLAARGPRKLSEATV 564 (567)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 999999999999999999999998888899999988764
No 2
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=4.2e-48 Score=392.56 Aligned_cols=448 Identities=74% Similarity=1.223 Sum_probs=337.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCcccccc
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (536)
+|+|||||++||+||+.|++.|++|+|+|+++++||++.++...+|+.+|.|+|++.+.++++.++++++|+.....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 58999999999999999999999999999999999999987545789999999999999999999999999987665555
Q ss_pred cceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHHHcCC
Q 009372 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (536)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (536)
....+......+....+.++. ++.+...+..++.....+++.++++....+........+.....+++|+.+|+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 159 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGV 159 (453)
T ss_pred CceEEecCCCCcceeeccCCC-CCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCC
Confidence 555554433333333333332 4445554455554444567777766655443322222233334578999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcceEEE
Q 009372 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI 298 (536)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I 298 (536)
++.+.+.++.++....++.+++++|+..+...+..++....+....+..|+.+..+++.|.+.+++.|++|++|++|++|
T Consensus 160 ~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I 239 (453)
T TIGR02731 160 PERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEI 239 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEE
Confidence 99989999999999998899999999998877776665556666666666556789999999999999999999999999
Q ss_pred EEcCCCCEEEEEEcCCc-----EEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCccEEEEEEEeeeccccCccc
Q 009372 299 ELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKL 373 (536)
Q Consensus 299 ~~~~~g~~~~v~~~~g~-----~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~ 373 (536)
..++++++++|++.+|+ ++.||.||+|+|+..+.+||+.......+.+.+..+.+.++.+++++ |+++++..
T Consensus 240 ~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~--~~~~~~~~- 316 (453)
T TIGR02731 240 VLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIW--FDRKLTTV- 316 (453)
T ss_pred EECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEE--EccccCCC-
Confidence 87667777778887765 79999999999999999999764322445677777788889999888 55554432
Q ss_pred ccccCccccccCCcceeeeccccCcccccCCCccEEEEEEecchhhccCChHHHHHHHHHHHHHhCCCCcccccccceEE
Q 009372 374 KNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIV 453 (536)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~ 453 (536)
....+..++..+...+.+.....+.+++..++.+++.....|..+++|++++.++++|.++||...... ....++
T Consensus 317 ----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~-~~~~~~ 391 (453)
T TIGR02731 317 ----DHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKAD-SPAKIL 391 (453)
T ss_pred ----CceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCC-CCceEE
Confidence 122333333333333333333344455567777666566777788999999999999999998531100 123567
Q ss_pred EEEEeecCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 009372 454 KYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 515 (536)
Q Consensus 454 ~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll 515 (536)
.+.|.+.|++.+...++.....+.+.+|++||||||++++.+|+|+||||+.||++||++|+
T Consensus 392 ~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 392 KYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 88999999998766677656778889999999999999999999999999999999999874
No 3
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.3e-43 Score=358.54 Aligned_cols=461 Identities=34% Similarity=0.610 Sum_probs=335.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCccc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (536)
+.++|+|||||++||++|+.|++.|++|+|+|+++.+||+++++....|+.+|+|.|++.+.++++.++++++|++....
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 34699999999999999999999999999999999999999988655789999999999999999999999999987655
Q ss_pred ccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccc--hhhh---c---ccccccccccc
Q 009372 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAII---G---GQAYVEAQDGL 207 (536)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~---~~~~~~~~~~~ 207 (536)
+......+. ...+......+....+.++..+..++. ...+.+.++++...... +... . ....+...++.
T Consensus 154 ~~~~~~~~~--~~~g~~~~~~~~~p~~~pl~~~~~~l~-~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~ 230 (569)
T PLN02487 154 VKDHTHTFV--NKGGDVGELDFRFPVGAPLHGIKAFLT-TNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDI 230 (569)
T ss_pred ccccceeEE--ecCCEEeeeccCCCCCchhhhHHHHHc-CCCCCHHHHHhhcccccccchhhhccCccccccccccccCC
Confidence 433222221 112222111111113334433444443 34466667666543321 1100 0 01223345679
Q ss_pred cHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCc-cchHHHHHHHHHcC
Q 009372 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPE-RLCLPIVEHIQSLG 286 (536)
Q Consensus 208 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~-~l~~~l~~~l~~~G 286 (536)
++.+|+++++.+.++.+.+++++....++.+++++|+..+...+..+.....+....|+.|+ +. .|++.+.+.++++|
T Consensus 231 sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg-~~~~l~~pl~~~L~~~G 309 (569)
T PLN02487 231 SFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGS-PDVRLSGPIAKYITDRG 309 (569)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCC-chHHHHHHHHHHHHHcC
Confidence 99999999988777899999999999999999999999887776443323444567788888 55 59999999999999
Q ss_pred cEEEeCcceEEEEEcC--CC--CEEEEEE---cCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCccEEEE
Q 009372 287 GEVRLNSRVQKIELND--DG--TVKNFLL---TNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINI 359 (536)
Q Consensus 287 ~~i~~~~~V~~I~~~~--~g--~~~~v~~---~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v 359 (536)
++|+++++|++|..+. ++ ++++|++ .+++.+.+|.||+|+|++.+.+|+|+..........+..+.+.+++++
T Consensus 310 g~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv 389 (569)
T PLN02487 310 GRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTV 389 (569)
T ss_pred CEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEE
Confidence 9999999999999853 33 3677887 344478999999999999999999886444445677888888899999
Q ss_pred EEEeeeccccCcccccc--------------cCccccccCCcceeeeccccCccc-c-cCCCccEEEEEEecchhhccCC
Q 009372 360 HIWVFFNCRFDRKLKNT--------------YDHLLFSRSSLLSVYADMSLTCKE-Y-YNPNQSMLELVFAPAEEWISCS 423 (536)
Q Consensus 360 ~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 423 (536)
+++ |+++.... .+++.+..+....++.+.....+. + .+....++..++.+++.+..++
T Consensus 390 ~L~------~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~ 463 (569)
T PLN02487 390 QLR------YNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLS 463 (569)
T ss_pred EEE------ecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCC
Confidence 988 44432111 111111111111122232111111 1 2233466777777778888999
Q ss_pred hHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHH
Q 009372 424 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGA 503 (536)
Q Consensus 424 ~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA 503 (536)
++++++.++++|.++||.... ..+...++...+++.+...|+....+|..++|++|||+||||+.++|+.++|||
T Consensus 464 ~~ei~~~~~~~L~~~~p~~~~-----~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgA 538 (569)
T PLN02487 464 NDKIVEKVHKQVLELFPSSRG-----LEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGA 538 (569)
T ss_pred HHHHHHHHHHHHHHhCccccc-----CceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHH
Confidence 999999999999999997422 135566889999999999999888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009372 504 VLSGKLCAQAIVQDYVLLAARGKGRLAEA 532 (536)
Q Consensus 504 ~~SG~~aA~~ll~~l~~~~~~~~~~~~~~ 532 (536)
+.||.+||+.|++...... -+++++++.
T Consensus 539 v~SG~~AA~~i~~~~~~~~-~~~~~~~~~ 566 (569)
T PLN02487 539 TLSGRQAAAYICEAGEELA-GLRKKLAAE 566 (569)
T ss_pred HHHHHHHHHHHHHHhhhhh-hhhhhhhcc
Confidence 9999999999999885554 445555543
No 4
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=1.6e-43 Score=356.75 Aligned_cols=447 Identities=36% Similarity=0.663 Sum_probs=322.0
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCcccccc
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (536)
+|+|||||++||+||+.|++.|++|+|+|+++.+||+++++....|+.+|.|.|++.+.++++.++++++|+.....+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 58999999999999999999999999999999999999997556789999999999998999999999999987655443
Q ss_pred cceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccc--hhhh---ccc---ccccccccccHH
Q 009372 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAII---GGQ---AYVEAQDGLTVQ 210 (536)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~---~~~~~~~~~s~~ 210 (536)
....+. ...+......+....+.++.....++. ...+++.++++...... +... ... ..+...+++++.
T Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFV--NKGGDIGELDFRFATGAPFNGLKAFFT-TSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEE--cCCCcccccccCCCCCCchhhhHHHhc-CCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 332232 111222111222223444444555554 45677878776554331 1110 000 122344679999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEE
Q 009372 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVR 290 (536)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~ 290 (536)
+|+++++.++...+.+++++....++.+++++|+......+..+.....++...++.|+....+.+.|.+.|++.|++|+
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~ 237 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFH 237 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEE
Confidence 99999988877899999999999999999999998886655544445666777888777434477789999999999999
Q ss_pred eCcceEEEEEcC--CC--CEEEEEEcCC---cEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCccEEEEEEEe
Q 009372 291 LNSRVQKIELND--DG--TVKNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWV 363 (536)
Q Consensus 291 ~~~~V~~I~~~~--~g--~~~~v~~~~g---~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~ 363 (536)
++++|++|..++ ++ ++++|++.+| +++.||+||+|+|++.+.+|+++..........+..+.+.++.+++++
T Consensus 238 ~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~- 316 (474)
T TIGR02732 238 LRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLR- 316 (474)
T ss_pred CCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEE-
Confidence 999999998753 23 2566667554 468999999999999999999875333345677888888899999888
Q ss_pred eeccccCcccc----------cccCccccccCCcceeeeccccCcc-cccCCCc-cEEEEEEecchhhccCChHHHHHHH
Q 009372 364 FFNCRFDRKLK----------NTYDHLLFSRSSLLSVYADMSLTCK-EYYNPNQ-SMLELVFAPAEEWISCSDSEIIDAT 431 (536)
Q Consensus 364 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ee~~~~~ 431 (536)
|+.+...+.. ...+++++..+....++.+.+...+ .+.+++. .++..++..+..+..++++++++.+
T Consensus 317 -~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 395 (474)
T TIGR02732 317 -YDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRV 395 (474)
T ss_pred -eccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHH
Confidence 4432222110 0011111111111111223221122 2332333 4455666666677788999999999
Q ss_pred HHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHH
Q 009372 432 MKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCA 511 (536)
Q Consensus 432 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA 511 (536)
+++|.++||.... ..+....+.+.+++.+...||+...+|...+|++|||+||||+..+|+.++|||+.||.+||
T Consensus 396 ~~~L~~~~p~~~~-----~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA 470 (474)
T TIGR02732 396 DKQVRALFPSSKN-----LKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAA 470 (474)
T ss_pred HHHHHHhCccccC-----CceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHH
Confidence 9999999996322 13556678899999999999988888999999999999999999999999999999999999
Q ss_pred HHHH
Q 009372 512 QAIV 515 (536)
Q Consensus 512 ~~ll 515 (536)
+.|+
T Consensus 471 ~~i~ 474 (474)
T TIGR02732 471 AAIL 474 (474)
T ss_pred HHhC
Confidence 9874
No 5
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=6.8e-39 Score=325.26 Aligned_cols=427 Identities=24% Similarity=0.325 Sum_probs=290.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCcccccc
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (536)
+|+|||||++||+||+.|+++|++|+|||+++++||++.++. .+|+.+|.|+|++...++++.++++++|+.....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc
Confidence 699999999999999999999999999999999999999876 5689999999999888889999999999976654443
Q ss_pred cceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHHHcCC
Q 009372 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (536)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (536)
....+...+ ... . +.. ...+... ..+...++++......... ......+.+..++.+|+++. .
T Consensus 80 ~~~~~~~~~---~~~--~----~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~-~ 142 (434)
T PRK07233 80 TKTGYYVDG---KLY--P----LGT----PLELLRF-PHLSLIDKFRLGLLTLLAR--RIKDWRALDKVPAEEWLRRW-S 142 (434)
T ss_pred CceEEEECC---eEe--c----CCC----HHHHHcC-CCCCHHHHHHhHHHHHhhh--hcccccccccccHHHHHHHh-c
Confidence 332222211 110 0 010 1111111 1222333332221111110 00112234568999999987 4
Q ss_pred ChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhc---CCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcce
Q 009372 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK---HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (536)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V 295 (536)
.+...+.++.++....++.+++++++..+...+....... ......++.|| ++.+++.|.+.+.+.|++|++|++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l~~~l~~~g~~v~~~~~V 221 (434)
T PRK07233 143 GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGG-FATLIDALAEAIEARGGEIRLGTPV 221 (434)
T ss_pred CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCC-HHHHHHHHHHHHHhcCceEEeCCCe
Confidence 6677788999999999999999999887655443221110 12235677776 7899999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCccEEEEEEEeeeccccCccccc
Q 009372 296 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKLKN 375 (536)
Q Consensus 296 ~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~ 375 (536)
++|+.++ +.++.+ ..+|++++||+||+|+|+..+..++++. +....+.++++.+.+..++++. |+.++...++.
T Consensus 222 ~~i~~~~-~~~~~~-~~~~~~~~ad~vI~a~p~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~ 295 (434)
T PRK07233 222 TSVVIDG-GGVTGV-EVDGEEEDFDAVISTAPPPILARLVPDL--PADVLARLRRIDYQGVVCMVLK--LRRPLTDYYWL 295 (434)
T ss_pred eEEEEcC-CceEEE-EeCCceEECCEEEECCCHHHHHhhcCCC--cHHHHhhhcccCccceEEEEEE--ecCCCCCCcee
Confidence 9999754 444434 3566789999999999999999998653 3344566778888888888777 55443221111
Q ss_pred ccCccccccCCcceeeeccccCcccccCCCccEEE-EEEec-chhhccCChHHHHHHHHHHHHHhCCCCcccccccceEE
Q 009372 376 TYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLE-LVFAP-AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIV 453 (536)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~ 453 (536)
.. ..++.++..++ ..+..++...+++.+++. ..+.. ...+..++++++++.++++|++++|... ...+.
T Consensus 296 ~~---~~~~~~~~~~~-~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~-----~~~~~ 366 (434)
T PRK07233 296 NI---NDPGAPFGGVI-EHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFD-----RDDVR 366 (434)
T ss_pred ee---cCCCCCcceEE-EecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCC-----hhhee
Confidence 00 00112233322 223333333334555432 22322 2223366889999999999999998531 12356
Q ss_pred EEEEeecCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 009372 454 KYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 519 (536)
Q Consensus 454 ~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~ 519 (536)
...+.+++++...+.+++...++.+.++++||||||+++...+.+++++|+.||++||++|+..++
T Consensus 367 ~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 367 AVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred eEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 777888888887777776666777788899999999965444446999999999999999988764
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=2.4e-38 Score=322.08 Aligned_cols=425 Identities=16% Similarity=0.191 Sum_probs=282.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC------CCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADA------GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGI 130 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~------g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~ 130 (536)
+++|+|||||+|||+||+.|++. |.+|+|||+++++||++.+.. ..|+.+|.|+|++...++++.++++++|+
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl 79 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNL 79 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCC
Confidence 35799999999999999999986 379999999999999999976 56889999999998888889999999999
Q ss_pred CCcccccccceeeeccCCCCccccccCC--CCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhccccccccccccc
Q 009372 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFP--EVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLT 208 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 208 (536)
+....+......+... .+....+... ..+|... ..++ ....+++..+++....+.... ....+++|
T Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~p~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s 147 (463)
T PRK12416 80 EEEMVYNETGISYIYS--DNTLHPIPSDTIFGIPMSV---ESLF-SSTLVSTKGKIVALKDFITKN------KEFTKDTS 147 (463)
T ss_pred ccceecCCCCceEEEE--CCeEEECCCCCeecCCCCh---HHhh-cCCcCCHHHHHHhhhhhccCC------CCCCCCCC
Confidence 8665433322211111 1111111110 0111111 1111 123334444444433322111 01135789
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh-----------------hcCCCeEEEecCCCC
Q 009372 209 VQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----------------EKHGSKMAFLDGNPP 271 (536)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g~~~~~~~gg~~ 271 (536)
+.+|+++. +..++.+.++.++....++.++++++....+..+..+.. ...+..+.++.|| +
T Consensus 148 v~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG-~ 225 (463)
T PRK12416 148 LALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGG-L 225 (463)
T ss_pred HHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCC-H
Confidence 99999986 778888899999999989899999987643332211100 0112234556666 8
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhcc
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKL 351 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~ 351 (536)
+.|++.|++.+.+ ++|++|++|++|+.++++ +.|++.+|+++.||+||+|+|+..+.+|++++.. ...+.++
T Consensus 226 ~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l----~~~~~~~ 297 (463)
T PRK12416 226 STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAPHDIAETLLQSNEL----NEQFHTF 297 (463)
T ss_pred HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCCHHHHHhhcCCcch----hHHHhcC
Confidence 8999999998855 689999999999986554 3577778888999999999999999999876433 2456777
Q ss_pred CCccEEEEEEEeeeccccCcccccccCcccccc-CCcc--eeeeccccCcccccCCCccEEEEEEec----chhhccCCh
Q 009372 352 VGVPVINIHIWVFFNCRFDRKLKNTYDHLLFSR-SSLL--SVYADMSLTCKEYYNPNQSMLELVFAP----AEEWISCSD 424 (536)
Q Consensus 352 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 424 (536)
.+.++.++++. |+.+++......++ ++.++ .+.. +.. ..+..++...+++..++.+++.. ..++..+++
T Consensus 298 ~~~~~~~v~l~--~~~~~~~~~~~g~G-~l~~~~~~~~~~~~~-~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 373 (463)
T PRK12416 298 KNSSLISIYLG--FDILDEQLPADGTG-FIVTENSDLHCDACT-WTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSE 373 (463)
T ss_pred CCCceEEEEEE--echhhcCCCCCceE-EEeeCCCCCeEEEEE-eecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCH
Confidence 88888888887 65444331111222 22222 2221 111 12223333333344444444431 245667899
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCC----CCCCCCCCCCeEEecccccCCCCCch
Q 009372 425 SEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASM 500 (536)
Q Consensus 425 ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~p~~~l~~aG~~~~~~~~~~i 500 (536)
+++.+.++++|+++|+... .+..+...+|.++++.+..++... .+.+..+.++||+||+++.. .+|
T Consensus 374 ee~~~~~~~~L~~~lG~~~-------~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i 443 (463)
T PRK12416 374 EELVRVALYDIEKSLGIKG-------EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGI 443 (463)
T ss_pred HHHHHHHHHHHHHHhCCCC-------CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccH
Confidence 9999999999999998532 234567788888887776553221 12233456899999999876 579
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009372 501 EGAVLSGKLCAQAIVQDY 518 (536)
Q Consensus 501 ~gA~~SG~~aA~~ll~~l 518 (536)
++|+.||+++|++|++.+
T Consensus 444 ~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 444 GACIGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999764
No 7
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.6e-39 Score=308.75 Aligned_cols=465 Identities=38% Similarity=0.580 Sum_probs=364.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCccccc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWK 137 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~ 137 (536)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.++.+.+|...|+|.|.|.+.|.++.+++++++.+....+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 58999999999999999999999999999999999999999998899999999999999999999999999999877777
Q ss_pred ccceee-eccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHHHc
Q 009372 138 EHSMIF-AMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (536)
Q Consensus 138 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (536)
.....+ .....++.+.++.... .|.+...+..++... .+...++++.+.++..........+.+.++.++.+||++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLRLP-QLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred hhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhhcc-ccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 766665 6666677766666555 455566666655543 5677777777766655533114556778899999999999
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhc-CCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcce
Q 009372 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (536)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V 295 (536)
+.......+.+.++.....+..++..++......+..+.... .++.....+|+..+.++..+.+++.+.|.+++.+.+|
T Consensus 159 g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv 238 (485)
T COG3349 159 GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPV 238 (485)
T ss_pred CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeecccee
Confidence 988888889999998888889999999988777776665444 5666677788778899999999999999999999999
Q ss_pred EEEEEcC---CCCEEEEEEcCC--cEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCccEEEEEEEeeeccc-c
Q 009372 296 QKIELND---DGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCR-F 369 (536)
Q Consensus 296 ~~I~~~~---~g~~~~v~~~~g--~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~-~ 369 (536)
+.|..+. +..++++....- +.+.++.|+.+.+...+...+|..+.+....+.+..+...++.+.+++ |+.- +
T Consensus 239 ~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~--~~~~~~ 316 (485)
T COG3349 239 KELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLR--FDGWVT 316 (485)
T ss_pred eeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEe--ecCccc
Confidence 9998764 344666665522 245577777888888888888887765555667777778899999888 4421 1
Q ss_pred Cccccc---ccCccccccCCcceeeeccccCcccccCCCc-cEEEEEEecchhhccCChHHHHHHHHHHHHHhCCCCccc
Q 009372 370 DRKLKN---TYDHLLFSRSSLLSVYADMSLTCKEYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISA 445 (536)
Q Consensus 370 ~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~ 445 (536)
+-...+ ..++..++.....+.+.+....++.+..++. +.+....++...|...+++++.....+.+...+|.....
T Consensus 317 ~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a 396 (485)
T COG3349 317 ELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEA 396 (485)
T ss_pred cccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhcc
Confidence 111100 1233335566667777776666666666665 455556677788888899999999999999888874332
Q ss_pred ccccceEEEEEEeecCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009372 446 DQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARG 525 (536)
Q Consensus 446 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~~~~~~~ 525 (536)
+ ...+....+.+++...|+...++|...+|+.|++++||++...+.+++|+|..||++||+.|++.+.......
T Consensus 397 -----~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~~~~~ 470 (485)
T COG3349 397 -----K-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHHAPLD 470 (485)
T ss_pred -----c-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhcCccc
Confidence 2 5667788899999999999999999999999999999999988889999999999999999999888776544
Q ss_pred ccccccc
Q 009372 526 KGRLAEA 532 (536)
Q Consensus 526 ~~~~~~~ 532 (536)
+.-++++
T Consensus 471 ~~~~~~~ 477 (485)
T COG3349 471 RRDLSDP 477 (485)
T ss_pred cccccCc
Confidence 4444443
No 8
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=9.8e-39 Score=322.57 Aligned_cols=414 Identities=20% Similarity=0.249 Sum_probs=251.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccC--cchHHHHHHHhCCCCccc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGINDRLQ 135 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~~~ 135 (536)
.+|+|||||+|||+||+.|.+.|++|+|||+++++||++.+.. ..|+.+|+|++++++. ...+.++++++|++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~ 79 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRT 79 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCceEec
Confidence 4899999999999999999999999999999999999999865 4688999999999753 334889999999964321
Q ss_pred ccccceeeeccCCCCccccccC-CCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHH
Q 009372 136 WKEHSMIFAMPNKPGEFSRFDF-PEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (536)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (536)
......++ .........+.. ...+|. .....+... +....+.. .. . .....+++|+.+|++
T Consensus 80 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~---~~-~-----~~~~~~~~s~~~~~~ 141 (435)
T PLN02268 80 SGDNSVLY--DHDLESYALFDMDGNQVPQ--ELVTKVGET-----FERILEET---EK-V-----RDEHEEDMSLLQAIS 141 (435)
T ss_pred cCCccccc--cccccccceecCCCCCCCH--HHHHHHHHH-----HHHHHHHH---HH-H-----HhccCCCcCHHHHHH
Confidence 10000011 000011000000 001111 111111000 00000000 00 0 001235678888876
Q ss_pred HcCCC------hHHHHHHHHHH---HhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHHc
Q 009372 215 KQGVP------DRVTTEVFIAM---SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL 285 (536)
Q Consensus 215 ~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~ 285 (536)
+.... ..+.+.++..+ ...+++.++++++...... .. ...|.. .++.+| +..+++.|.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~--~~---~~~g~~-~~~~~G-~~~l~~~l~~----- 209 (435)
T PLN02268 142 IVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ--EE---LLEGGH-GLMVRG-YDPVINTLAK----- 209 (435)
T ss_pred HHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC--cc---ccCCCc-eeecCC-HHHHHHHHhc-----
Confidence 54111 11333333322 2345567888887653210 00 001211 223333 4555555443
Q ss_pred CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhc--CCCcchhcHHHHHHhccCCccEEEEEEEe
Q 009372 286 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ--LPENWKEMAYFKRLEKLVGVPVINIHIWV 363 (536)
Q Consensus 286 G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~l--l~~~~~~~~~~~~l~~~~~~~~~~v~l~~ 363 (536)
+++|++|++|++|..++++ + .|++.+|+++.||+||+|+|+.+++.. ...+.+|....++++++.+.+..|+.+.
T Consensus 210 ~~~i~~~~~V~~i~~~~~~-v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~- 286 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNG-V-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALH- 286 (435)
T ss_pred cCceeCCCeeEEEEEcCCc-E-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEE-
Confidence 5789999999999986555 3 478888888999999999999998753 2334456666788889999888888776
Q ss_pred eeccccCcccccccCccccccCCcceeeeccccCcccccCCCccEEEEEEec--chhhccCChHHHHHHHHHHHHHhCCC
Q 009372 364 FFNCRFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPD 441 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~~~~L~~~~~~ 441 (536)
|+++||+.. ...+......... .++.... ...+..++..+..+ +..+..++++++++.++++|.++||.
T Consensus 287 -f~~~fw~~~--~~~g~~~~~~~~~-~~~~~~~-----~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~ 357 (435)
T PLN02268 287 -FDSVFWPNV--EFLGVVAPTSYGC-SYFLNLH-----KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD 357 (435)
T ss_pred -eCCCCCCCC--ceeeccCCCCCCc-eEEEecc-----cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC
Confidence 888888742 1122222111111 1111110 11333444443333 36677889999999999999999985
Q ss_pred CcccccccceEEEEEEeecCCc--cccc-CCCC-CCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHH
Q 009372 442 EISADQSKAKIVKYHVVKTPRS--VYKT-IPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 517 (536)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~p~~--~~~~-~~~~-~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~ 517 (536)
...+ . .+...+|...|++ .|.+ .++. ....+.++.|++||||||++++..|+|+||||++||++||++|+..
T Consensus 358 ~~~p--~--~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~ 433 (435)
T PLN02268 358 ATEP--V--QYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMR 433 (435)
T ss_pred CCCc--c--EEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHh
Confidence 3222 1 2344555556664 3333 2342 2344567889999999999999988999999999999999999976
Q ss_pred H
Q 009372 518 Y 518 (536)
Q Consensus 518 l 518 (536)
|
T Consensus 434 l 434 (435)
T PLN02268 434 L 434 (435)
T ss_pred h
Confidence 4
No 9
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=299.54 Aligned_cols=430 Identities=19% Similarity=0.146 Sum_probs=274.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCcc
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 134 (536)
.+.+||||||||++||+||++|.+.|++|+|||++++.|||+.+... .+...|+|++++.+.++.+..+.+++|++...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~ 83 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGVPLEP 83 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCCCCCc
Confidence 56789999999999999999999999999999999999999999875 78899999999988888899999999998765
Q ss_pred cccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHH
Q 009372 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (536)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (536)
.+.....+......... .|............ ....................+...+.+.+++.+| +
T Consensus 84 fi~~g~~~~~~~~~~~~---------~p~~~~~~~~d~~~----~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~ 149 (450)
T COG1231 84 FIRDGDNVIGYVGSSKS---------TPKRSLTAAADVRG----LVAELEAKARSAGELDPGLTPEDRELDLESLAAW-K 149 (450)
T ss_pred eeccCcccccccccccc---------cchhccchhhhhcc----hhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h
Confidence 54433322211111110 01111100000000 0000000000000111111222234445666666 1
Q ss_pred HcCCChHHHHHHHHHHHhhc-CC-CCCccccHHHHHHHHHHHh------hhcCCCeEEEecCCCCccchHHHHHHHHHcC
Q 009372 215 KQGVPDRVTTEVFIAMSKAL-NF-INPDELSMQCILIALNRFL------QEKHGSKMAFLDGNPPERLCLPIVEHIQSLG 286 (536)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G 286 (536)
.. ..+.+-....... .+ ..+.++....-......+. ...........-|| ++.|.+++.+.+ |
T Consensus 150 ~~-----~~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GG-md~la~Afa~ql---~ 220 (450)
T COG1231 150 TS-----SLRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGG-MDQLAEAFAKQL---G 220 (450)
T ss_pred hc-----cccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCcc-HHHHHHHHHHHh---h
Confidence 10 0000001111111 11 2222322221111111111 11111222222244 778888887766 5
Q ss_pred cEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCccEEEEEEEeeec
Q 009372 287 GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWVFFN 366 (536)
Q Consensus 287 ~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~ 366 (536)
-.|.++++|.+|.++++| +.|++.+.+++.+|.||+|+|+.++..+...+..+..++++++.++|.+..|+.+. |+
T Consensus 221 ~~I~~~~~V~rI~q~~~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~--f~ 296 (450)
T COG1231 221 TRILLNEPVRRIDQDGDG--VTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVA--FS 296 (450)
T ss_pred ceEEecCceeeEEEcCCe--EEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeee--cC
Confidence 689999999999997666 35888884589999999999999999997776667778888999999999888766 99
Q ss_pred cccCcccccccCccccccCCcceeeeccccCcccccCCCccEEEE--E-EecchhhccCChHHHHHHHHHHHHHhCCCCc
Q 009372 367 CRFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLEL--V-FAPAEEWISCSDSEIIDATMKELAKLFPDEI 443 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~ 443 (536)
.|||++-. .+++..+.+..+..++.+.+ ....+..++.. . ..++..|..+++++.++.++.+++++||+..
T Consensus 297 rpFWee~~-~l~G~~~tD~~~~~i~~~s~-----~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a 370 (450)
T COG1231 297 RPFWEEAG-ILGGESLTDLGLGFISYPSA-----PFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEA 370 (450)
T ss_pred chhhhhcc-cCCceEeecCCcceEecCcc-----ccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhh
Confidence 99999864 57888888877544433221 11234444433 2 2346889999999999999999999999643
Q ss_pred ccccccceEEEEEEeecCC--ccc-ccCCC-CCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 009372 444 SADQSKAKIVKYHVVKTPR--SVY-KTIPN-CEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 519 (536)
Q Consensus 444 ~~~~~~~~~~~~~~~~~p~--~~~-~~~~~-~~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~ 519 (536)
...+ .....++|...|+ +.+ .+.++ ..+..+.+..|.++|+|||++.+..|.||++||++||++||.+|...++
T Consensus 371 ~~~f--~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 371 ADPF--DYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred cccc--ccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 3321 1223345555555 422 23344 5567788899999999999666667889999999999999999998765
Q ss_pred H
Q 009372 520 L 520 (536)
Q Consensus 520 ~ 520 (536)
+
T Consensus 449 s 449 (450)
T COG1231 449 S 449 (450)
T ss_pred C
Confidence 3
No 10
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=3e-37 Score=314.91 Aligned_cols=423 Identities=20% Similarity=0.287 Sum_probs=287.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC----CCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~----g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (536)
++||+|||||+|||+||++|+++ |++|+|+|+++++||++.+.. .+|+.+|.|+|++...++++.++++++|+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~ 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEH 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCc
Confidence 46999999999999999999998 999999999999999999976 5789999999999988888999999999876
Q ss_pred cccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHH
Q 009372 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (536)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (536)
...+......+... ..+.... +|.. +..++. ...+.+..+++....... .. ....++|+.+|
T Consensus 81 ~~~~~~~~~~~~~~-~~g~~~~------~p~~---~~~~~~-~~~~~~~~~~~~~~~~~~---~~----~~~~d~s~~e~ 142 (462)
T TIGR00562 81 VLVSDATGQRYVLV-NRGKLMP------VPTK---IAPFVK-TGLFSLGGKLRAGMDFIR---PA----SPGKDESVEEF 142 (462)
T ss_pred ccccCCCCceEEEE-CCCceec------CCCC---hHHHhc-CCCCCchhhHHhhhhhcc---CC----CCCCCcCHHHH
Confidence 54321111111110 0122111 1211 111221 122333334333221110 00 12235899999
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHH-----------hhhc--------------CCCeEEEec
Q 009372 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQEK--------------HGSKMAFLD 267 (536)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--------------~g~~~~~~~ 267 (536)
+++. +.+++.+.++.++..+.++.+++++++......+... .... .|..+..+.
T Consensus 143 l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (462)
T TIGR00562 143 VRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLA 221 (462)
T ss_pred HHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecc
Confidence 9987 6788889999999999999999999887654332111 0000 111133344
Q ss_pred CCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHH
Q 009372 268 GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKR 347 (536)
Q Consensus 268 gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~ 347 (536)
|| ++.|++.|++.+.. ++|+++++|++|..++++ + .|++.+|+++.||+||+|+|+..+..++++. +....++
T Consensus 222 gG-~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~--~~~~~~~ 294 (462)
T TIGR00562 222 TG-LETLPEEIEKRLKL--TKVYKGTKVTKLSHRGSN-Y-TLELDNGVTVETDSVVVTAPHKAAAGLLSEL--SNSASSH 294 (462)
T ss_pred hh-HHHHHHHHHHHhcc--CeEEcCCeEEEEEecCCc-E-EEEECCCcEEEcCEEEECCCHHHHHHHhccc--CHHHHHH
Confidence 44 66777888877742 689999999999985554 2 4777788789999999999999999998763 4456678
Q ss_pred HhccCCccEEEEEEEeeeccccCcccccccCccccccC--CcceeeeccccCcccccCCCccEEEEEEec--chhhccCC
Q 009372 348 LEKLVGVPVINIHIWVFFNCRFDRKLKNTYDHLLFSRS--SLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCS 423 (536)
Q Consensus 348 l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 423 (536)
+.++.+.++.++.+. |++++|+.....++.+...+. .+.++.++ +...+...+++..++..+..+ ..++..++
T Consensus 295 l~~l~~~~~~~v~l~--~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~-s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~ 371 (462)
T TIGR00562 295 LDKIHSPPVANVNLG--FPEGSVDGELEGFGFLISRSSKFAILGCIFT-SKLFPNRAPPGKTLLTAYIGGATDESIVDLS 371 (462)
T ss_pred HhcCCCCceEEEEEE--EchHHcCCCCCceEEEccCCCCCceEEEEEE-ccccCCcCCCCcEEEEEEeCCCCCccccCCC
Confidence 889999999888877 666655432222222221111 23444443 234455555566655544433 24556789
Q ss_pred hHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCCCCC----CCCCCCCeEEecccccCCCCCc
Q 009372 424 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL----QRSPVEGFYLAGDYTKQKYLAS 499 (536)
Q Consensus 424 ~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~p~~~l~~aG~~~~~~~~~~ 499 (536)
++++++.++++|.++++... .+..+.+.+|+++.+.+.+++....+. +..+.++|++||++... .+
T Consensus 372 ~ee~~~~v~~~L~~~~gi~~-------~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g---~~ 441 (462)
T TIGR00562 372 ENEIINIVLRDLKKVLNINN-------EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG---VG 441 (462)
T ss_pred HHHHHHHHHHHHHHHhCCCC-------CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC---Cc
Confidence 99999999999999997421 134567888999988887775333222 23446799999999874 58
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 009372 500 MEGAVLSGKLCAQAIVQDYV 519 (536)
Q Consensus 500 i~gA~~SG~~aA~~ll~~l~ 519 (536)
+++|+.||+++|++|++.|.
T Consensus 442 i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 442 IPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998764
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=7.3e-37 Score=311.69 Aligned_cols=419 Identities=21% Similarity=0.261 Sum_probs=273.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCccc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g--~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (536)
++|+|||||+|||+||+.|++.| ++|+|||+++++||++++.. .+|+.+|+|+|++.+.++++.++++++|+.....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCcccee
Confidence 47999999999999999999987 89999999999999999976 5789999999988887888999999999875433
Q ss_pred ccc-cceeeeccCCCCccccccCCC--CCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHH
Q 009372 136 WKE-HSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (536)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (536)
... ....+.. .+....+.... ..|.. +...+ ....+...++++..... ........+++++.+|
T Consensus 80 ~~~~~~~~~~~---~g~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~ 146 (451)
T PRK11883 80 ANTTGQSYIYV---NGKLHPIPPGTVMGIPTS---IAPFL-FAGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAF 146 (451)
T ss_pred cCCCCcceEEE---CCeEEECCCCCeeccCCC---chhhh-cCCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHH
Confidence 221 1111111 11111111000 01110 01111 01222222222221111 0011123456899999
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHh----------h-----h--cCCCeEEEecCCCCccch
Q 009372 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL----------Q-----E--KHGSKMAFLDGNPPERLC 275 (536)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~--~~g~~~~~~~gg~~~~l~ 275 (536)
+++. +++.+.+.++.++....++.+++++++......+..+. . . ..+..+.++.+| ++.++
T Consensus 147 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~l~ 224 (451)
T PRK11883 147 FRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGG-LQSLI 224 (451)
T ss_pred HHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccH-HHHHH
Confidence 9875 77888899999999999989999998876543222111 0 0 113345556666 78888
Q ss_pred HHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCcc
Q 009372 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP 355 (536)
Q Consensus 276 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~ 355 (536)
+.|.+.+.+. +|++|++|++|+.++++ +.|++.+|+++.||+||+|+|+..+.++++++ ...+.++++.+.+
T Consensus 225 ~~l~~~l~~~--~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~ 296 (451)
T PRK11883 225 EALEEKLPAG--TIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTS 296 (451)
T ss_pred HHHHHhCcCC--eEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCc
Confidence 8888877543 89999999999985444 34777888899999999999999999987643 2346778889999
Q ss_pred EEEEEEEeeeccccCcccccccCccccc-cC--CcceeeeccccCcccccCCCccEEEEEEec-ch-hhccCChHHHHHH
Q 009372 356 VINIHIWVFFNCRFDRKLKNTYDHLLFS-RS--SLLSVYADMSLTCKEYYNPNQSMLELVFAP-AE-EWISCSDSEIIDA 430 (536)
Q Consensus 356 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ee~~~~ 430 (536)
+.++++. |+.+++. .+ ...++.+. +. ++..++++ +...+...+++..++..+++. .. ....++++++++.
T Consensus 297 ~~~v~l~--~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (451)
T PRK11883 297 VATVALA--FPESATN-LP-DGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAF 371 (451)
T ss_pred eEEEEEE--eccccCC-CC-CceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHH
Confidence 8888877 6655421 11 11122222 22 22333322 233344555555555544432 22 2345689999999
Q ss_pred HHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCC----CCCCCCCCCCeEEecccccCCCCCchhHHHHH
Q 009372 431 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVLS 506 (536)
Q Consensus 431 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~S 506 (536)
++++|+++++.... ...+...+|.++.+.+.++.... ++.+.. ++||||||+++.+ +++++|+.|
T Consensus 372 ~~~~L~~~~g~~~~-------~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g---~~i~~av~s 440 (451)
T PRK11883 372 VLADLSKVMGITGD-------PEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEG---VGLPDCIAQ 440 (451)
T ss_pred HHHHHHHHhCCCCC-------ceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCC---ccHHHHHHH
Confidence 99999999975321 23556677777776666653222 222222 6799999999874 589999999
Q ss_pred HHHHHHHHHH
Q 009372 507 GKLCAQAIVQ 516 (536)
Q Consensus 507 G~~aA~~ll~ 516 (536)
|+++|++|++
T Consensus 441 g~~~a~~i~~ 450 (451)
T PRK11883 441 AKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=4.2e-37 Score=316.01 Aligned_cols=432 Identities=20% Similarity=0.272 Sum_probs=281.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC-CCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCC
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~-g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (536)
.+.++||+|||||++||+||++|++. |++|+|||+++++||++.+.. .+|+.+|.|+|++...++.+..++++ |+..
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~ 86 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLRD 86 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CChh
Confidence 34567999999999999999999999 999999999999999999976 57899999999998877778777777 8765
Q ss_pred ccccccc-ceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHH
Q 009372 133 RLQWKEH-SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (536)
Q Consensus 133 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (536)
...+... ...+.. ..++... +|.. ...++ ....+.+.++++.......... . ....+++|+.+
T Consensus 87 ~~~~~~~~~~~~~~--~~g~~~~------~p~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~sv~~ 150 (496)
T PLN02576 87 DLVFPDPQAPRYVV--WNGKLRP------LPSN---PIDLP-TFDLLSAPGKIRAGLGAFGWKR---P-PPPGREESVGE 150 (496)
T ss_pred heecCCCCceEEEE--ECCEEEE------cCCC---hHHhc-CcCcCChhHHHHHhHHHhhccC---C-CCCCCCCcHHH
Confidence 5433221 111111 0111111 1111 11111 1233444455443322221100 0 01235789999
Q ss_pred HHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHH---------------hhh---------------cCCC
Q 009372 212 WMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF---------------LQE---------------KHGS 261 (536)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~---------------~~g~ 261 (536)
|+++. +..++.+.++.++..+.++.+++++|+...+..+..+ ... ..+.
T Consensus 151 ~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (496)
T PLN02576 151 FVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQ 229 (496)
T ss_pred HHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCC
Confidence 99987 8889999999999999999999999988654432221 000 0111
Q ss_pred eEEEecCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCC-CEEEEEEcCC-cEEEcCEEEEccCHHHHhhcCCCcc
Q 009372 262 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPENW 339 (536)
Q Consensus 262 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g-~~~~v~~~~g-~~i~ad~VI~a~~~~~l~~ll~~~~ 339 (536)
......|| ++.|++.|++.+.+ .+|++|++|++|+.++++ +.+.+.+.+| +++.||+||+|+|+..+..++++.
T Consensus 230 ~~~~~~gG-~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~- 305 (496)
T PLN02576 230 TVGSFRGG-LQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPK- 305 (496)
T ss_pred eeEeccch-HHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhccc-
Confidence 22333444 77888888876621 589999999999986555 3222333355 369999999999999999998753
Q ss_pred hhcHHHHHHhccCCccEEEEEEEeeeccccCccc------ccccCccccccC--CcceeeeccccCcccccCCCccEEEE
Q 009372 340 KEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKL------KNTYDHLLFSRS--SLLSVYADMSLTCKEYYNPNQSMLEL 411 (536)
Q Consensus 340 ~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~ 411 (536)
+....+.+.++.+.++.++.+. |++++|... ...++....... ...++.+ .+...+...+++..++..
T Consensus 306 -~~~~~~~l~~~~~~~~~~v~l~--~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~-~s~~~p~~~~~~~~~l~~ 381 (496)
T PLN02576 306 -SPAAADALPEFYYPPVAAVTTS--YPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIY-SSSLFPDRAPEGRVLLLN 381 (496)
T ss_pred -CHHHHHHhccCCCCceEEEEEE--EchHHcccccccCCCCCceEEEccCCCCCceEEEEe-ecCcCCCCCCCCCEEEEE
Confidence 3345677888999999888877 777665531 011111111111 1222322 233444455555454444
Q ss_pred EEec--chhhccCChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCCCCCCC---CCC--CC
Q 009372 412 VFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR---SPV--EG 484 (536)
Q Consensus 412 ~~~~--~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~p~--~~ 484 (536)
+..+ ...+..++++++++.++++|.++++....+. ........|+++++.+.+++....+... .+. +|
T Consensus 382 ~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~-----p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~ 456 (496)
T PLN02576 382 YIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPP-----PKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPG 456 (496)
T ss_pred EECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCC-----CcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCC
Confidence 4332 2556678999999999999999998532111 1233456788888777776432221111 222 69
Q ss_pred eEEecccccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 009372 485 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 520 (536)
Q Consensus 485 l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~~ 520 (536)
||+||+++.. .++++|+.||.++|++|+..+..
T Consensus 457 l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~~ 489 (496)
T PLN02576 457 LFLGGNYRGG---VALGKCVESGYEAADLVISYLES 489 (496)
T ss_pred EEEeccccCC---ccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999985 58999999999999999987653
No 13
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=4.7e-37 Score=316.48 Aligned_cols=430 Identities=19% Similarity=0.234 Sum_probs=260.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccC-CC--CeeeeceeeeccCcch-HHHHHHHhCC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~-~g--~~~d~G~~~~~~~~~~-~~~l~~~lg~ 130 (536)
...+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.... +| ..+|+|++|+++...+ +..+.+++|+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl 237 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSI 237 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCC
Confidence 456799999999999999999999999999999999999999987532 23 3799999999987666 7789999998
Q ss_pred CCcccccccceeeeccCCCCccccccCCCCCCcchh-HHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccH
Q 009372 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (536)
+.... .....++.. ++...... ...... .+..++. ++.. +..... ...++.|+
T Consensus 238 ~~~~~-~~~~~~~~~---~G~~v~~~----~~~~~~~~~~~~l~---------~~~~---l~~~~~------~~~~d~Sl 291 (738)
T PLN02529 238 PLHKV-RDNCPLYKP---DGALVDKE----IDSNIEFIFNKLLD---------KVTE---LRQIMG------GFANDISL 291 (738)
T ss_pred Ccccc-CCCceEEeC---CCcCcchh----hhhhHHHHHHHHHH---------HHHH---HHHhcc------cCccCCCH
Confidence 75422 111112211 11111000 000000 0001110 0000 000000 12346789
Q ss_pred HHHHHHcC------CChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHH
Q 009372 210 QEWMRKQG------VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 283 (536)
Q Consensus 210 ~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~ 283 (536)
.+++++.. .. .....++........+.....++.......... .....+.....+.|| +..|++.|++
T Consensus 292 ~~~le~~~~~~~~~~t-~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~-~~~e~~G~~~~i~GG-~~~Li~aLA~--- 365 (738)
T PLN02529 292 GSVLERLRQLYGVARS-TEERQLLDWHLANLEYANAGCLSDLSAAYWDQD-DPYEMGGDHCFLAGG-NWRLINALCE--- 365 (738)
T ss_pred HHHHHHHHhhhccCCC-HHHHHHHHHHHHHhceecCCChHHhhhhHhhhc-cccccCCceEEECCc-HHHHHHHHHh---
Confidence 99887642 11 112233333332233333333333332221111 001223334445555 6777777765
Q ss_pred HcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCcchhcHHHHHHhccCCccEEEEEE
Q 009372 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHI 361 (536)
Q Consensus 284 ~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~--ll~~~~~~~~~~~~l~~~~~~~~~~v~l 361 (536)
++.|++|++|++|.+++++ + .|++ +++++.||+||+|+|+.++++ +...+.+|..+.++++++.+.++.|+.+
T Consensus 366 --~L~IrLnt~V~~I~~~~dG-V-tV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L 440 (738)
T PLN02529 366 --GVPIFYGKTVDTIKYGNDG-V-EVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAM 440 (738)
T ss_pred --cCCEEcCCceeEEEEcCCe-E-EEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEE
Confidence 3569999999999986555 2 3654 455899999999999999984 4344445667788999999999999987
Q ss_pred EeeeccccCcccccccCccccc--cCCcceeeeccccCcccccCCCccEEEEEEec-chhhccCChHHHHHHHHHHHHHh
Q 009372 362 WVFFNCRFDRKLKNTYDHLLFS--RSSLLSVYADMSLTCKEYYNPNQSMLELVFAP-AEEWISCSDSEIIDATMKELAKL 438 (536)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ee~~~~~~~~L~~~ 438 (536)
. |+++||+.....++..... .......+.+.. ..+.+..+++++.+. +..+..++++++++.++++|.++
T Consensus 441 ~--F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~-----~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~i 513 (738)
T PLN02529 441 V--FPSVFWGEELDTFGCLNESSNKRGEFFLFYGYH-----TVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGI 513 (738)
T ss_pred E--eCCccccCCCCceEEEeccCCCCceEEEEecCC-----CCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 7 8888887532111111110 111111111111 011223333333333 36677889999999999999999
Q ss_pred CCCC--cccccccceEEEEEEeecCC--cccccCC-C-CCCCCCCCCCC-CCCeEEecccccCCCCCchhHHHHHHHHHH
Q 009372 439 FPDE--ISADQSKAKIVKYHVVKTPR--SVYKTIP-N-CEPCRPLQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCA 511 (536)
Q Consensus 439 ~~~~--~~~~~~~~~~~~~~~~~~p~--~~~~~~~-~-~~~~~~~~~~p-~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA 511 (536)
|+.. ..+.+ ..+...+|...|+ |.|.+.. + .......+..| .++||||||+|+..|+++||||++||+|||
T Consensus 514 fgp~~~~vp~P--i~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA 591 (738)
T PLN02529 514 YNPKGINVPDP--IQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREA 591 (738)
T ss_pred hCccccccCCc--eEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHH
Confidence 9731 11111 2244455555555 4444432 2 21122344566 489999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccc
Q 009372 512 QAIVQDYVLLAARGKGRLA 530 (536)
Q Consensus 512 ~~ll~~l~~~~~~~~~~~~ 530 (536)
.+|++.++.+..+.++++.
T Consensus 592 ~eIl~~l~~~~~~~~~~~~ 610 (738)
T PLN02529 592 SRILHVARSQQSNSRKSMQ 610 (738)
T ss_pred HHHHHHHhhhhccchhhhh
Confidence 9999999888777666553
No 14
>PLN02676 polyamine oxidase
Probab=100.00 E-value=7.1e-37 Score=308.46 Aligned_cols=426 Identities=19% Similarity=0.193 Sum_probs=259.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCccCceeeeeccCCCCeeeeceeeecc----CcchHHHHHHHh
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG----AYPNIQNLFGEL 128 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~l 128 (536)
.+..+||+|||||++||+||++|++.|. +|+|+|+++++||++.+.. ..|+.+|.|++++.+ ....+.++.+++
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~ 101 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKL 101 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhc
Confidence 3457799999999999999999999998 6999999999999998865 478899999999964 334578899999
Q ss_pred CCCCccccccc-c-eeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhccccccccccc
Q 009372 129 GINDRLQWKEH-S-MIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDG 206 (536)
Q Consensus 129 g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (536)
|+......... . .++.. +++. .+. .....+.... ..+.+. ...+.... . ....++
T Consensus 102 g~~~~~~~~~~~~~~~~~~---~g~~--------~~~--~~~~~~~~~~--~~~~~~---~~~~~~~~-~----~~~~~~ 158 (487)
T PLN02676 102 KLRTFYSDFDNLSSNIYKQ---DGGL--------YPK--KVVQKSMKVA--DASDEF---GENLSISL-S----AKKAVD 158 (487)
T ss_pred CCceeecCccccceeEECC---CCCC--------CCH--HHHHHHHHHH--HHHHHH---HHHHHHhh-c----ccCCCC
Confidence 98754221110 1 11111 1111 010 0000100000 000000 00000000 0 011233
Q ss_pred ccH--HHHHHHcCCChHHHHHHHHHHHh-hcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEe--cCCCCccchHHHHHH
Q 009372 207 LTV--QEWMRKQGVPDRVTTEVFIAMSK-ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL--DGNPPERLCLPIVEH 281 (536)
Q Consensus 207 ~s~--~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~gg~~~~l~~~l~~~ 281 (536)
.++ .+++.+.. ...........+.. ..++.+++++++..+... ..+. ..|....++ .+| ++.|++.|.+.
T Consensus 159 ~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~--~~~~-~~g~~~~~~~~~~G-~~~l~~~La~~ 233 (487)
T PLN02676 159 ISILTAQRLFGQV-PKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEPN--PTFV-DFGEDEYFVADPRG-YESLVYYLAEQ 233 (487)
T ss_pred ccHHHHHHHHhhC-CCCHHHHHHHHHhccceeccCccccchhhcCcc--cccc-cCCCceEEeecCCC-HHHHHHHHHhh
Confidence 444 23333321 10111111111111 114566677776543210 0011 122222333 334 78889999887
Q ss_pred HHHc------CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCcchhcHHHHHHhccCC
Q 009372 282 IQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVG 353 (536)
Q Consensus 282 l~~~------G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~--ll~~~~~~~~~~~~l~~~~~ 353 (536)
+.+. +.+|++|++|++|..++++ +.|++.+|++++||+||+|+|+.+++. +...+.+|....++++++.+
T Consensus 234 ~~~~~~~~~~~~~I~l~~~V~~I~~~~~g--V~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~ 311 (487)
T PLN02676 234 FLSTKSGKITDPRLKLNKVVREISYSKNG--VTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDM 311 (487)
T ss_pred cccccccccCCCceecCCEeeEEEEcCCc--EEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCc
Confidence 7543 2679999999999986555 358888998899999999999999986 55555567677788899999
Q ss_pred ccEEEEEEEeeeccccCcccccccCccccccCC--cceeeeccccCcccccCCCccEEEEEEec--chhhccCChHHHHH
Q 009372 354 VPVINIHIWVFFNCRFDRKLKNTYDHLLFSRSS--LLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIID 429 (536)
Q Consensus 354 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~ 429 (536)
....|+.+. |+++||+.-. ......+.+.. ...++... ....++..++..++.+ +..|..+++++..+
T Consensus 312 g~~~Kv~l~--f~~~FW~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~ 383 (487)
T PLN02676 312 AVYTKIFLK--FPYKFWPSGP-GTEFFLYAHERRGYYPFWQHL-----ENEYPGSNVLFVTVTDEESRRIEQQPDSETKA 383 (487)
T ss_pred eeeEEEEEE--eCCCCCCCCC-Cceeeeeeccccccchhhhhc-----ccCCCCCCEEEEEechHHHHHHHhCCHHHHHH
Confidence 888888876 8999988521 11111121110 00111000 0011233344333332 36677889999999
Q ss_pred HHHHHHHHhCCCCcccccccceEEEEEEeecCCc--cccc-CCCC-CCCCCCCCCCCCCeEEecccccCCCCCchhHHHH
Q 009372 430 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS--VYKT-IPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVL 505 (536)
Q Consensus 430 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~-~~~~-~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~ 505 (536)
.++++|.++||..... ...+..+.|...|++ .|.+ .++. ....+.++.|+++|||||++++..|+|+||||++
T Consensus 384 ~vl~~L~~~~g~~~~~---p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~ 460 (487)
T PLN02676 384 EIMEVLRKMFGPNIPE---ATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYL 460 (487)
T ss_pred HHHHHHHHHhCCCCCC---cceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHH
Confidence 9999999999853221 123455566666664 4443 3443 3345667889999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009372 506 SGKLCAQAIVQDYVLL 521 (536)
Q Consensus 506 SG~~aA~~ll~~l~~~ 521 (536)
||+|||++|+..++.+
T Consensus 461 SG~RaA~~I~~~l~~~ 476 (487)
T PLN02676 461 AGIDTANDLLECIKKK 476 (487)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987653
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-36 Score=293.64 Aligned_cols=410 Identities=23% Similarity=0.342 Sum_probs=288.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCccc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g--~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (536)
+.|+|||||+|||+|||+|++++ .+|+|+|+.++.||.+.++. .+|+.+|.|+|.+......+.++++++|++..+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 47999999999999999999998 89999999999999999985 7899999999988766677899999999998876
Q ss_pred ccccceeeeccCCCCccccccCCCC--CCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHH
Q 009372 136 WKEHSMIFAMPNKPGEFSRFDFPEV--LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM 213 (536)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 213 (536)
+.....-+.. ..+++..+..... +|..... +...+.+.+..+. ........++.++.+|+
T Consensus 80 ~~~~~~~~i~--~~gkl~p~P~~~i~~ip~~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~d~sv~~f~ 141 (444)
T COG1232 80 WNSTARKYIY--YDGKLHPIPTPTILGIPLLLLS-----------SEAGLARALQEFI-----RPKSWEPKQDISVGEFI 141 (444)
T ss_pred cCCcccceEe--eCCcEEECCccceeecCCcccc-----------chhHHHHHHHhhh-----cccCCCCCCCcCHHHHH
Confidence 5543322111 1222222111110 1110000 0011111111111 01112334679999999
Q ss_pred HHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCC------------------eEEEecCCCCccch
Q 009372 214 RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS------------------KMAFLDGNPPERLC 275 (536)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------------~~~~~~gg~~~~l~ 275 (536)
+++ +.+++.+.++.++..++|+.+.+++|+......... ....+++ ...+..|| ++.|+
T Consensus 142 r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~-~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG-~~~l~ 218 (444)
T COG1232 142 RRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILAR-AERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGG-LQSLI 218 (444)
T ss_pred HHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhh-hhhhhcchhhhhhhccCcccccccccccccCcc-HHHHH
Confidence 998 888999999999999999999999999843332221 1111221 23445555 88999
Q ss_pred HHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCcc
Q 009372 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP 355 (536)
Q Consensus 276 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~ 355 (536)
++|.+.+..+ |+++++|++|..+.++. .+++.+|+.+.||.||+|+|++.+..++++. ...+.+.++.+.+
T Consensus 219 ~al~~~l~~~---i~~~~~V~~i~~~~~~~--~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~----~~~~~~~~~~~~s 289 (444)
T COG1232 219 EALAEKLEAK---IRTGTEVTKIDKKGAGK--TIVDVGGEKITADGVISTAPLPELARLLGDE----AVSKAAKELQYTS 289 (444)
T ss_pred HHHHHHhhhc---eeecceeeEEEEcCCcc--EEEEcCCceEEcceEEEcCCHHHHHHHcCCc----chhhhhhhccccc
Confidence 9999988775 99999999999864443 3667788889999999999999999999872 2236677888888
Q ss_pred EEEEEEEeeeccccCcc----cccccCccccccCC-cceeeeccccCcccccCCCccEEEEEEecc-hhh-ccCChHHHH
Q 009372 356 VINIHIWVFFNCRFDRK----LKNTYDHLLFSRSS-LLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEW-ISCSDSEII 428 (536)
Q Consensus 356 ~~~v~l~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ee~~ 428 (536)
..++.+. ++++ ....++-.+..+++ +..+.+ .|..+|...+.+.+++.+.+... .++ ..+++||++
T Consensus 290 ~~~vv~~------~~~~~~~~~~~~~g~~iad~~~~~~a~~~-~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~ 362 (444)
T COG1232 290 VVTVVVG------LDEKDNPALPDGYGLLIADDDPYILAITF-HSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELV 362 (444)
T ss_pred eEEEEEE------eccccccCCCCceEEEEecCCCcceeEEE-ecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHH
Confidence 8888887 5554 33333333334444 444443 45566666666777776655433 333 356799999
Q ss_pred HHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCCCCC----CCCCCCCeEEecccccCCCCCchhHHH
Q 009372 429 DATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL----QRSPVEGFYLAGDYTKQKYLASMEGAV 504 (536)
Q Consensus 429 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~p~~~l~~aG~~~~~~~~~~i~gA~ 504 (536)
+.++++|.++++....+ ..+++.+|+++++.|..++...... +..-+++|+.+|.+... -++.+|+
T Consensus 363 ~~~l~~L~~~~~~~~~~-------~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I 432 (444)
T COG1232 363 AAVLDDLKKLGGINGDP-------VFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCI 432 (444)
T ss_pred HHHHHHHHHHcCcCcch-------hheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHH
Confidence 99999999999975443 2678889999999999986554333 23234789999988765 4899999
Q ss_pred HHHHHHHHHHH
Q 009372 505 LSGKLCAQAIV 515 (536)
Q Consensus 505 ~SG~~aA~~ll 515 (536)
.+|..||++|+
T Consensus 433 ~~g~~aa~~l~ 443 (444)
T COG1232 433 AAGKEAAEQLL 443 (444)
T ss_pred HHHHHHHHHhh
Confidence 99999999986
No 16
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=4.7e-35 Score=295.93 Aligned_cols=414 Identities=29% Similarity=0.419 Sum_probs=278.2
Q ss_pred HHHHHHHHCCCceEEEecCCccCceeeeeccCCC--CeeeeceeeeccCcchHHHHHHHhCCCCcccccccceeeeccCC
Q 009372 71 STAKYLADAGHKPLLLEARDVLGGKIAAWKDGDG--DWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNK 148 (536)
Q Consensus 71 ~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g--~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~ 148 (536)
+||+.|+++|++|+|||+++++||++.++. .+| +.+|.|+|++.+.++++.++++++|++...........+..+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-- 77 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDP-- 77 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecC--
Confidence 589999999999999999999999999976 344 459999999998889999999999998654321111222111
Q ss_pred CCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHHHcCCChHHHHHHHH
Q 009372 149 PGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFI 228 (536)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 228 (536)
.+....+... .++.+......+. ....++...+.+....+...... .....+..|+.+|+++.+.++.+.+.++.
T Consensus 78 ~~~~~~~~~~-~~~~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 152 (419)
T TIGR03467 78 GGRLSRLRLS-RLPAPLHLARGLL-RAPGLSWADKLALARALLALRRT---RFRALDDTTVGDWLQAAGQSERLIERLWE 152 (419)
T ss_pred CCCceeecCC-CCCCCHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHhc---CccccCCCCHHHHHHHcCCCHHHHHHHHH
Confidence 1111111111 1233322222222 22334444444433222111110 01234679999999998888888888999
Q ss_pred HHHhhcCCCCCccccHHHHHHHHHH-HhhhcCCCeEEEecCCCCccch-HHHHHHHHHcCcEEEeCcceEEEEEcCCCCE
Q 009372 229 AMSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLC-LPIVEHIQSLGGEVRLNSRVQKIELNDDGTV 306 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~gg~~~~l~-~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~ 306 (536)
++....++.+++++++......+.. +.....+....++.|| +..+. +.|++.+++.|++|++|++|++|..++++..
T Consensus 153 p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~ 231 (419)
T TIGR03467 153 PLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVP-LSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIR 231 (419)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCC-HHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcce
Confidence 9999999999999998877665543 2222233456677776 45554 5589899889999999999999998655422
Q ss_pred EEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCccEEEEEEEeeeccccCcccccccCccccccCC
Q 009372 307 KNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKLKNTYDHLLFSRSS 386 (536)
Q Consensus 307 ~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (536)
.+.+.+|+++.||+||+|+|++++.+|++.. ...+.++.+++.++.++++. |++++|.+. ....+...+
T Consensus 232 -~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~--~~~~~~~~~----~~~~~~~~~ 300 (419)
T TIGR03467 232 -ALVLSGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLR--LDRAVRLPA----PMVGLVGGL 300 (419)
T ss_pred -EEEecCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEE--eCCCcCCCC----CeeeecCCc
Confidence 2223467789999999999999999998762 23467788889888888876 777776432 111111222
Q ss_pred cceeeeccccCcccccCCCccEEEEEEecchhhccCChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccc
Q 009372 387 LLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYK 466 (536)
Q Consensus 387 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 466 (536)
... +++.+.. ++...++.++......+..++++++++.++++|+++||..... .+....+..+.++.+.
T Consensus 301 ~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 369 (419)
T TIGR03467 301 AQW-LFDRGQL-----AGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGA-----KPLWARVIKEKRATFA 369 (419)
T ss_pred eeE-EEECCcC-----CCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccC-----CccceEEEEccCCccc
Confidence 211 1221111 1222344444445566777899999999999999999863211 1233345556666666
Q ss_pred cCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 009372 467 TIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 515 (536)
Q Consensus 467 ~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll 515 (536)
+.++....++.+.+|++|||||||++++++++++|||+.||.+||++|+
T Consensus 370 ~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 370 ATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred cCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 6666555566677889999999999999888899999999999999986
No 17
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-36 Score=300.08 Aligned_cols=442 Identities=24% Similarity=0.292 Sum_probs=258.8
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcch-HHHHHHHhCCC
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPN-IQNLFGELGIN 131 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~ 131 (536)
...+.++|||||||+|||+||++|.+.|++|+|||+++++|||+.++....+..+|+|++++.+.+.+ +.-+.+++|++
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLE 90 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcc
Confidence 34567899999999999999999999999999999999999999999877777899999999998884 67778889988
Q ss_pred CcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHH
Q 009372 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (536)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (536)
... ......++...+ ......+....+.....+................. . .......................
T Consensus 91 ~~~-~~~~~~l~~~~~---~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~-i-~~~~~~~~~~~~~~~~~~~~~~~ 164 (501)
T KOG0029|consen 91 LYK-VRDTCPLFNENG---GESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIG-I-SDDSFGEALEAFLSASRLMKTLL 164 (501)
T ss_pred cce-ecccccccccCC---cccccccccchhhhhHHHHHHHhhhhhhhhhcccc-c-ccccHHHHHHhHHHHHHHHHhhH
Confidence 643 122222222222 11111111112221111111111000000000000 0 00000000000000000000011
Q ss_pred HHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEEe
Q 009372 212 WMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRL 291 (536)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~ 291 (536)
+++..+.........+..+.. ......+.++.... .....+. ..+ ......+| ...++..+.. |..|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~d~~~~-~~~-~~~~~~~G-~~~v~~~la~-----~l~I~~ 233 (501)
T KOG0029|consen 165 ELLLEGEADKVLQWHLVNLEL-TFIAHLENASARLW--DQDELFG-GGG-IHLLMKGG-YEPVVNSLAE-----GLDIHL 233 (501)
T ss_pred HHhhhhhhhHHHHHHHHHHHH-HhhccHhHhhHHhh--hhhhhcc-ccc-chhHhhCC-ccHHHhhcCC-----Ccceee
Confidence 111111111111111111110 00011111111110 0011111 111 11222222 3444444443 899999
Q ss_pred CcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCcchhcHHHHHHhccCCccEEEEEEEeeecccc
Q 009372 292 NSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCRF 369 (536)
Q Consensus 292 ~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~--ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~ 369 (536)
+..|.+|.+.+++. +.+++.++..+.+|+||+|+|..+++. +...+.+|..+.++++++......|+.+. |++.|
T Consensus 234 ~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~--F~~~f 310 (501)
T KOG0029|consen 234 NKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILE--FPRVF 310 (501)
T ss_pred ceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEE--ecccc
Confidence 99999999977775 346666676799999999999999888 66667778888999999998888888876 88888
Q ss_pred CcccccccCccccccCCcce--eeeccccCcccccCCCccEEEEEEec-chhhccCChHHHHHHHHHHHHHhCCCCcccc
Q 009372 370 DRKLKNTYDHLLFSRSSLLS--VYADMSLTCKEYYNPNQSMLELVFAP-AEEWISCSDSEIIDATMKELAKLFPDEISAD 446 (536)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~ 446 (536)
|.+-...++ .+.......+ .+.+... .. ....++....+. +..+..++++++++.++..|.++|+.....+
T Consensus 311 W~~~~d~fg-~~~~~~~~~~~~~f~~~~~----~~-~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~ 384 (501)
T KOG0029|consen 311 WDQDIDFFG-IVPETSVLRGLFTFYDCKP----VA-GHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPD 384 (501)
T ss_pred CCCCcCeEE-EccccccccchhhhhhcCc----cC-CCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCC
Confidence 863211111 1111111111 1111111 11 111233333332 4778899999999999999999999545555
Q ss_pred cccceEEEEEEeecCCcccccCC-CCCCC-CCCCCCCCCC-eEEecccccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 009372 447 QSKAKIVKYHVVKTPRSVYKTIP-NCEPC-RPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 520 (536)
Q Consensus 447 ~~~~~~~~~~~~~~p~~~~~~~~-~~~~~-~~~~~~p~~~-l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~~ 520 (536)
+...-+.+|.......+.|.+.+ +.... .+.+..|+.+ +||||++|+..|+++++||+.||.++|..|++.+..
T Consensus 385 p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 385 PLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred ccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 56667777777777777777654 33222 3567888887 999999999999999999999999999999999885
No 18
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.6e-36 Score=306.04 Aligned_cols=444 Identities=18% Similarity=0.205 Sum_probs=250.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-----CceEEEecCCccCceeeeeccCCCCeeeeceeeeccCc-chHHHHHHHhC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAG-----HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY-PNIQNLFGELG 129 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g-----~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~-~~~~~l~~~lg 129 (536)
+..||+|||||++||+||+.|++.| ++|+|||+++++||++.+.. ..|+.+|.|++++++.. ..+.++++++|
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~~~~~~~l~~~~g 82 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIGGSPVYKIAQEAG 82 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence 3569999999999999999999887 89999999999999999976 46889999999999653 45789999999
Q ss_pred CCCccc-cccc-----ceeeeccCCCCccccccCCCCCCcchhH-HHHHHhcCC-C-CChhHHHHhhcccchhhhccccc
Q 009372 130 INDRLQ-WKEH-----SMIFAMPNKPGEFSRFDFPEVLPAPLNG-ILAILRNNE-M-LTWPEKVKFAIGLLPAIIGGQAY 200 (536)
Q Consensus 130 ~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 200 (536)
+..... +... ...+. ...+. .....+...... +..++.... . ..-.+. ...++..........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~--~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~ 154 (539)
T PLN02568 83 SLESDEPWECMDGFPDRPKTV--AEGGF----EVDPSIVESISTLFRGLMDDAQGKLIEPSEV--DEVDFVKLAAKAARV 154 (539)
T ss_pred CccccCcceecccccccceEE--ccCCc----CCCHHHHHHHHHHHHHHHHHhhccccccccc--ccccccccchhccch
Confidence 864321 1110 00000 00010 000000000000 111111000 0 000000 000000000000000
Q ss_pred ccccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHh--------------------hhcCC
Q 009372 201 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL--------------------QEKHG 260 (536)
Q Consensus 201 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~g 260 (536)
.....+.|+.+|+++. +.. +.+.+..+.....+.-..+.++....+..+..+. ....|
T Consensus 155 ~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g 232 (539)
T PLN02568 155 CESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPG 232 (539)
T ss_pred hccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCC
Confidence 0011234788888763 111 1111111111111111122111111111110000 00012
Q ss_pred CeEEEecCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh------c
Q 009372 261 SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL------Q 334 (536)
Q Consensus 261 ~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~------l 334 (536)
. ...+.|| ++.|++.|++.+. +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+.+++. +
T Consensus 233 ~-~~~i~gG-~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~--v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i 306 (539)
T PLN02568 233 E-EITIAKG-YLSVIEALASVLP--PGTIQLGRKVTRIEWQDEP--VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSG 306 (539)
T ss_pred C-eEEECCc-HHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe--EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccc
Confidence 2 2334454 6788888888774 3479999999999986544 358888998899999999999999985 3
Q ss_pred CCCcchhcHHHHHHhccCCccEEEEEEEeeeccccCccccc--ccC--ccccccCCc------ceeeeccccCcccccCC
Q 009372 335 LPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKLKN--TYD--HLLFSRSSL------LSVYADMSLTCKEYYNP 404 (536)
Q Consensus 335 l~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~--~~~--~~~~~~~~~------~~~~~~~s~~~~~~~~~ 404 (536)
...+.+|..++++++++.+..+.|+.+. |+++||..-.. ... .+++.+.+. ...+.......... ..
T Consensus 307 ~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~--f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 383 (539)
T PLN02568 307 LFSPPLPDFKTDAISRLGFGVVNKLFVE--LSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI-HK 383 (539)
T ss_pred eecCCCCHHHHHHHHhcCCceeeEEEEE--ecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc-CC
Confidence 4445567777889999999889888876 88887753100 000 011111100 00000000000001 12
Q ss_pred CccEEEEEE-ec-chhhccCChHHHHHHHHHHHHHhCCCCccc-------------------ccccceEEEEEEeecCC-
Q 009372 405 NQSMLELVF-AP-AEEWISCSDSEIIDATMKELAKLFPDEISA-------------------DQSKAKIVKYHVVKTPR- 462 (536)
Q Consensus 405 ~~~~~~~~~-~~-~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~-------------------~~~~~~~~~~~~~~~p~- 462 (536)
+..++..+. ++ +..+..++++++++.+++.|.++||..... ...-..+...+|...|+
T Consensus 384 ~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~ 463 (539)
T PLN02568 384 NSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLF 463 (539)
T ss_pred CCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCcc
Confidence 333444443 33 467788999999999999999999853220 00122345556666666
Q ss_pred -cccccC-CCCCC-CCCCCCCCCC-------------CeEEecccccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 009372 463 -SVYKTI-PNCEP-CRPLQRSPVE-------------GFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 519 (536)
Q Consensus 463 -~~~~~~-~~~~~-~~~~~~~p~~-------------~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~ 519 (536)
|.|++. ++... ....++.|++ +||||||+|+..|+++|+||++||+|+|++|++.++
T Consensus 464 ~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 464 LGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 455554 34322 3455666653 799999999999999999999999999999998764
No 19
>PLN03000 amine oxidase
Probab=100.00 E-value=9e-36 Score=307.26 Aligned_cols=424 Identities=19% Similarity=0.247 Sum_probs=252.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccC---CCCeeeeceeeeccCcch-HHHHHHHhCC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG---DGDWYETGLHIFFGAYPN-IQNLFGELGI 130 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~---~g~~~d~G~~~~~~~~~~-~~~l~~~lg~ 130 (536)
....+|+|||||++||+||+.|.+.|++|+|+|+++++||++.+.... .++.+|+|++++++...+ +..+++++|+
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl 261 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGS 261 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCC
Confidence 356899999999999999999999999999999999999999987532 257799999999987665 5667899998
Q ss_pred CCcccccccceeeeccCCCCccccccCCCCCCcchhH-HHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccH
Q 009372 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNG-ILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (536)
..... .....++... +... .......... +..++.. ..+++...+ ....+.++
T Consensus 262 ~l~~~-~~~~~ly~~~---Gk~v----~~~~~~~ve~~fn~lLd~------~~~lr~l~~------------~~~~D~SL 315 (881)
T PLN03000 262 SLYKV-RDKCPLYRVD---GKPV----DPDVDLKVEVAFNQLLDK------ASKLRQLMG------------DVSMDVSL 315 (881)
T ss_pred ceeec-CCCCeEEEeC---CcCC----chhhhhhHHHHHHHHHHH------HHHHHHHhc------------ccCcCCcH
Confidence 74321 1111222211 1110 0000000000 0001100 000000000 00112344
Q ss_pred HHHHHHc------CCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHH
Q 009372 210 QEWMRKQ------GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 283 (536)
Q Consensus 210 ~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~ 283 (536)
.++++.. .+.++. ..++........+.....++....... ........+.....+.|| ++.|+++|++.+
T Consensus 316 g~aLe~~~~~~g~~~t~e~-~~Ll~w~lanLE~~~as~ls~LSl~~w-dqd~~~e~~G~~~~v~GG-~~~LieaLa~~L- 391 (881)
T PLN03000 316 GAALETFRQVSGNDVATEE-MGLFNWHLANLEYANAGLVSKLSLAFW-DQDDPYDMGGDHCFLPGG-NGRLVQALAENV- 391 (881)
T ss_pred HHHHHHHHHHHcccCCHHH-HHHHHHHHHHHhcccccCHHHHHHHHh-hhcccccCCCceEEeCCC-HHHHHHHHHhhC-
Confidence 4333211 111111 112222222121222222222221110 000001122233445555 788888888765
Q ss_pred HcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHh--hcCCCcchhcHHHHHHhccCCccEEEEEE
Q 009372 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHI 361 (536)
Q Consensus 284 ~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~--~ll~~~~~~~~~~~~l~~~~~~~~~~v~l 361 (536)
.|+++++|++|.+++++ +.|++.+ +++.||+||+|+|+.+++ .+...+.+|....++++++.+....|+.+
T Consensus 392 ----~I~Ln~~Vt~I~~~~dg--V~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL 464 (881)
T PLN03000 392 ----PILYEKTVQTIRYGSNG--VKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAM 464 (881)
T ss_pred ----CcccCCcEEEEEECCCe--EEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEE
Confidence 49999999999986555 3466644 489999999999999999 45444556777789999999999999887
Q ss_pred EeeeccccCcccccccCccccccCCcceeeeccccCcccccC-CCccEEEEEE-ec-chhhccCChHHHHHHHHHHHHHh
Q 009372 362 WVFFNCRFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYN-PNQSMLELVF-AP-AEEWISCSDSEIIDATMKELAKL 438 (536)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~ee~~~~~~~~L~~~ 438 (536)
. |+++||+.....++.. ..+....+.++.. .++.+ .+..++..+. ++ +..|..++++++++.++++|+++
T Consensus 465 ~--Fd~~FW~~d~~~FG~l-~~~~~~rg~~~~f----~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrki 537 (881)
T PLN03000 465 L--FPYVFWSTDLDTFGHL-TEDPNYRGEFFLF----YSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGI 537 (881)
T ss_pred E--eCCccccCCCCceeEE-ecCCCCCceeEEE----eCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHH
Confidence 6 9998887642222222 2111111111100 11222 2333444333 33 36678899999999999999999
Q ss_pred CCCC-c-ccccccceEEEEEEeecCC--cccccC-CC-CCCCCCCCCCCC--CCeEEecccccCCCCCchhHHHHHHHHH
Q 009372 439 FPDE-I-SADQSKAKIVKYHVVKTPR--SVYKTI-PN-CEPCRPLQRSPV--EGFYLAGDYTKQKYLASMEGAVLSGKLC 510 (536)
Q Consensus 439 ~~~~-~-~~~~~~~~~~~~~~~~~p~--~~~~~~-~~-~~~~~~~~~~p~--~~l~~aG~~~~~~~~~~i~gA~~SG~~a 510 (536)
|+.. . .+.+. .+...+|...|+ |.|.+. ++ .....+.+..|+ ++||||||+|+..|+|+|+||++||+||
T Consensus 538 fg~~~~~vp~Pv--~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRA 615 (881)
T PLN03000 538 YEPQGINVPDPL--QTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLRE 615 (881)
T ss_pred hCccccccCCce--EEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHH
Confidence 9732 1 11222 234455555555 455543 34 333455667785 5899999999998999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 009372 511 AQAIVQDYVLLAAR 524 (536)
Q Consensus 511 A~~ll~~l~~~~~~ 524 (536)
|.+|++.++....+
T Consensus 616 A~eIl~~l~~~~~~ 629 (881)
T PLN03000 616 AANMAQSAKARGIR 629 (881)
T ss_pred HHHHHHHhhhccCC
Confidence 99999999888655
No 20
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=9.8e-36 Score=307.73 Aligned_cols=426 Identities=19% Similarity=0.220 Sum_probs=253.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCC-C--CeeeeceeeeccCcch-HHHHHHHhCC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-G--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~lg~ 130 (536)
....+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....+ + ..+|+|++++++...+ +..+++++|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl 315 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGL 315 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCC
Confidence 4568999999999999999999999999999999999999998876322 2 3589999999876554 6789999998
Q ss_pred CCcccccccceeeeccCCCCccccccCCCCCCcchhH-HHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccH
Q 009372 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNG-ILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (536)
+.... .....++. .++...... .+..... +..++. ...+.+.. +. +. ....+.|+
T Consensus 316 ~~~~~-~~~~~~~~---~dG~~~~~~----~~~~v~~~f~~lL~------~~~klr~~--~~-------~~-~~~~D~SL 371 (808)
T PLN02328 316 PLHKV-RDICPLYL---PDGKAVDAE----IDSKIEASFNKLLD------RVCKLRQA--MI-------EE-VKSVDVNL 371 (808)
T ss_pred ceEec-CCCceEEe---CCCcCcchh----hhhhHHHHHHHHHH------HHHHHHHh--hh-------hc-ccccCcCH
Confidence 64321 11111111 112111001 1111100 011111 00000000 00 00 01124678
Q ss_pred HHHHHHc----CCC-hHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHH
Q 009372 210 QEWMRKQ----GVP-DRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (536)
Q Consensus 210 ~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~ 284 (536)
.++++++ +.. ......++..............++.......... .....+.....+.|| +..|+++|++.+
T Consensus 372 g~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd-~~~e~~G~~~~v~GG-~~~Li~aLa~~L-- 447 (808)
T PLN02328 372 GTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQD-DPYEMGGDHCFIPGG-NDTFVRELAKDL-- 447 (808)
T ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhcc-ccccCCCeEEEECCc-HHHHHHHHHhhC--
Confidence 8887643 111 1111122222221111112111211111100000 001122234445555 788888887754
Q ss_pred cCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCcchhcHHHHHHhccCCccEEEEEEE
Q 009372 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIW 362 (536)
Q Consensus 285 ~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~--ll~~~~~~~~~~~~l~~~~~~~~~~v~l~ 362 (536)
.|++|++|++|.+.+++. .| +.+|+++.||+||+|+|+.++++ +...+.+|....++++++.+..+.|+.+.
T Consensus 448 ---~I~ln~~V~~I~~~~dgV--~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~ 521 (808)
T PLN02328 448 ---PIFYERTVESIRYGVDGV--IV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALL 521 (808)
T ss_pred ---CcccCCeeEEEEEcCCeE--EE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEE
Confidence 489999999999865553 24 45777899999999999999884 33344456677889999999999998876
Q ss_pred eeeccccCcccccccCccccccCCccee---eeccccCcccccCCCccEEEEEEec--chhhccCChHHHHHHHHHHHHH
Q 009372 363 VFFNCRFDRKLKNTYDHLLFSRSSLLSV---YADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAK 437 (536)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~~~~L~~ 437 (536)
|+++||+.....++. +..+....+. +.+.+ ...+..++..+..+ +..+..++++++++.++++|.+
T Consensus 522 --F~~~FW~~~~d~fG~-l~~d~s~rG~~~lf~s~s------~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ 592 (808)
T PLN02328 522 --FPYNFWGGEIDTFGH-LTEDPSMRGEFFLFYSYS------SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRG 592 (808)
T ss_pred --eCCccccCCCCceEE-EeecCCCCceEEEEecCC------CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHH
Confidence 898888854222222 2222112221 11111 01233444444333 3667788999999999999999
Q ss_pred hCCCC--cccccccceEEEEEEeecCC--cccccC-CCC-CCCCCCCCCCC--CCeEEecccccCCCCCchhHHHHHHHH
Q 009372 438 LFPDE--ISADQSKAKIVKYHVVKTPR--SVYKTI-PNC-EPCRPLQRSPV--EGFYLAGDYTKQKYLASMEGAVLSGKL 509 (536)
Q Consensus 438 ~~~~~--~~~~~~~~~~~~~~~~~~p~--~~~~~~-~~~-~~~~~~~~~p~--~~l~~aG~~~~~~~~~~i~gA~~SG~~ 509 (536)
+|+.. ..+.+. .+..++|...|+ |.|.+. ++. ....+.+..|+ ++||||||+++..|+|+|+||++||+|
T Consensus 593 ifgp~~~~vp~P~--~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlR 670 (808)
T PLN02328 593 IFHPKGIVVPDPV--QAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMR 670 (808)
T ss_pred HhCcccccccCcc--eEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHH
Confidence 99742 111222 233444544444 445443 332 22344556774 589999999999889999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 009372 510 CAQAIVQDYVLLAARG 525 (536)
Q Consensus 510 aA~~ll~~l~~~~~~~ 525 (536)
||.+|+..++.+..+.
T Consensus 671 AA~eIl~~~~~~~~~~ 686 (808)
T PLN02328 671 EAANILRVARRRSLCI 686 (808)
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999887654
No 21
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=296.60 Aligned_cols=424 Identities=20% Similarity=0.258 Sum_probs=277.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCccc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (536)
.++||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|+|++...++.+.+++++++......
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~ 81 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFL 81 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCccc
Confidence 467999999999999999999999999999999999999999865 5789999999999988899999999998633322
Q ss_pred ccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHHH
Q 009372 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (536)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (536)
.......... .+.+.. +|.. ....+. .+.+....+......... .....+++|+.+|+++
T Consensus 82 ~~~~~~~~~~---~g~~~~------~p~~---~~~~l~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~e~l~~ 141 (479)
T PRK07208 82 LRPRLSRIYY---RGKFFD------YPLK---AFDALK---NLGLWRTAKCGASYLKAR-----LRPRKEEDSFEDWVIN 141 (479)
T ss_pred cccccceEEE---CCEEec------CCcc---hhHHHH---hCCHhHHHHHHHHHHHHh-----cCCCCCCCCHHHHHHH
Confidence 2111111111 111111 1111 011111 122222222221111110 0011356999999998
Q ss_pred cCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHH---------HHHHhhhc-------------CCCeEEEecCCCCcc
Q 009372 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIA---------LNRFLQEK-------------HGSKMAFLDGNPPER 273 (536)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-------------~g~~~~~~~gg~~~~ 273 (536)
. +.+.+.+.++.++....++.+++++++.+.... +...+... ......++.|| ++.
T Consensus 142 ~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG-~~~ 219 (479)
T PRK07208 142 R-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLG-PGQ 219 (479)
T ss_pred h-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCC-cch
Confidence 6 788889999999999999999999998753321 11111110 01234566666 789
Q ss_pred chHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc--CCc--EEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHh
Q 009372 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLE 349 (536)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~--~g~--~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~ 349 (536)
|++.|.+.+.+.|++|++|++|++|..++++.++.++.. +|+ ++.||+||+|+|++.+..++++. .+....+.++
T Consensus 220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~~ 298 (479)
T PRK07208 220 LWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAAA 298 (479)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHHh
Confidence 999999999999999999999999998655544444432 353 58999999999999888887643 3445566777
Q ss_pred ccCCccEEEEEEEeeeccccCcccccccCcccccc-CCcceeeeccccCcccccCCCcc-EEEE-EE-ec-chhhccCCh
Q 009372 350 KLVGVPVINIHIWVFFNCRFDRKLKNTYDHLLFSR-SSLLSVYADMSLTCKEYYNPNQS-MLEL-VF-AP-AEEWISCSD 424 (536)
Q Consensus 350 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~-~~~~-~~-~~-~~~~~~~~~ 424 (536)
.+.+.++.++++. |+.+... ......+.+ ....+.....+...+...|++.. .+.. ++ .. ...| .+++
T Consensus 299 ~l~~~~~~~v~l~--~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~-~~~d 371 (479)
T PRK07208 299 GLRYRDFITVGLL--VKELNLF----PDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLW-NMSD 371 (479)
T ss_pred CCCcceeEEEEEE--ecCCCCC----CCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccc-cCCH
Confidence 8888888888877 4433211 111111111 11111111122233444555553 3322 21 22 2334 6789
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCCCCC---CCCCCCCeEEecccccCCCCCchh
Q 009372 425 SEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL---QRSPVEGFYLAGDYTKQKYLASME 501 (536)
Q Consensus 425 ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~p~~~l~~aG~~~~~~~~~~i~ 501 (536)
+++++.++++|.++.+. . ...+....+.+++++++.+..++....+. +.++.+|||+||++....| .+++
T Consensus 372 eel~~~~~~~L~~l~~~-~-----~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d 444 (479)
T PRK07208 372 EDLIALAIQELARLGLI-R-----PADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQD 444 (479)
T ss_pred HHHHHHHHHHHHHcCCC-C-----hhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChh
Confidence 99999999999997432 1 12366777888999988877764332221 3466789999999887765 5899
Q ss_pred HHHHHHHHHHHHHHHH
Q 009372 502 GAVLSGKLCAQAIVQD 517 (536)
Q Consensus 502 gA~~SG~~aA~~ll~~ 517 (536)
+|+.||+++|+.|+..
T Consensus 445 ~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 445 HSMLTAMLAVENIIAG 460 (479)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998775
No 22
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.5e-35 Score=274.22 Aligned_cols=427 Identities=22% Similarity=0.267 Sum_probs=251.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCccCceeeeeccCCCCeeeeceeeeccCc-chHHHHHHHhCCC
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY-PNIQNLFGELGIN 131 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~-~~~~~l~~~lg~~ 131 (536)
....++|||||||+|||+||.+|.+.|. +|+|+|+.+++|||+.+.... +.++|+|++|+++.. ..+.++.+++|..
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~-d~~ielGAqwihG~~gNpVY~la~~~g~~ 96 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFA-DGVIELGAQWIHGEEGNPVYELAKEYGDL 96 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcC-CCeEeecceeecCCCCChHHHHHHHhCcc
Confidence 3456699999999999999999998765 899999999999999998744 449999999999844 4488999988821
Q ss_pred CcccccccceeeeccCCCCccccccCCCCCCcchhH-HHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHH
Q 009372 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNG-ILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (536)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (536)
.. .......+. .........+.+|..... +..+..... . ....+....+..|+.
T Consensus 97 ~~--~~~tg~~~~-----~~~~~~~~g~~V~~~~~~~~~~~~~~~~---------------~---~~r~~~~~~~~~SvG 151 (498)
T KOG0685|consen 97 KL--LEVTGPAYV-----DNFHTRSNGEVVPEELLDELNEITVTLS---------------D---KLREAEIAHDEGSVG 151 (498)
T ss_pred ce--eccCCcccc-----ceeEEEecCccCcHHHHHHHHHHHHhhh---------------h---hcccccccCccccHH
Confidence 11 111111000 000000111112222111 111111000 0 000000012345666
Q ss_pred HHHHHc-------CC----ChHHHHHHHHHHHhh---cCCC-CCccccHHHHHHHHHHHhhhcCC-CeEEEecCCCCccc
Q 009372 211 EWMRKQ-------GV----PDRVTTEVFIAMSKA---LNFI-NPDELSMQCILIALNRFLQEKHG-SKMAFLDGNPPERL 274 (536)
Q Consensus 211 ~~l~~~-------~~----~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~gg~~~~l 274 (536)
+++... .- ...+...++..+... ..+. +.++++..... .|-.. .| ....+...| ..++
T Consensus 152 ~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~----ey~~~-~ge~~~~~~~kG-y~~i 225 (498)
T KOG0685|consen 152 EYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALL----EYTEC-PGEELLIWNKKG-YKRI 225 (498)
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhcc----ceeec-CchhhheechhH-HHHH
Confidence 666541 00 111112222222111 1111 22233222111 11111 11 011122222 4455
Q ss_pred hHHHHHHHHHc----C--cEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhc---CCCcchhcHHH
Q 009372 275 CLPIVEHIQSL----G--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ---LPENWKEMAYF 345 (536)
Q Consensus 275 ~~~l~~~l~~~----G--~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~l---l~~~~~~~~~~ 345 (536)
.+-|.+.+.+. | .+++++++|.+|..++.+.+ .|++.||+.+.||+||++++..++++- +..+.+|..+.
T Consensus 226 L~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~ 304 (498)
T KOG0685|consen 226 LKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQ 304 (498)
T ss_pred HHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHH
Confidence 55555544332 2 35667799999998666665 599999999999999999999999883 33445678888
Q ss_pred HHHhccCCccEEEEEEEeeeccccCcccccccCccccccCC----------cc-eee-eccccCcccccCCCccEEEEEE
Q 009372 346 KRLEKLVGVPVINIHIWVFFNCRFDRKLKNTYDHLLFSRSS----------LL-SVY-ADMSLTCKEYYNPNQSMLELVF 413 (536)
Q Consensus 346 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~-~~~s~~~~~~~~~~~~~~~~~~ 413 (536)
++++++..+++.|+++- |++|||..-++... .++.+.. +. .++ +.+. . .....+++++.
T Consensus 305 ~AIe~lgfGtv~KiFLE--~E~pfwp~~~~~i~-~lw~~e~l~e~r~~~~~w~~~~~~f~~v-----~-~~~~vL~gWia 375 (498)
T KOG0685|consen 305 RAIERLGFGTVNKIFLE--FEEPFWPSDWNGIQ-LLWLDEDLEELRSTLDAWEEDIMGFQPV-----S-WAPNVLLGWIA 375 (498)
T ss_pred HHHHhccCCccceEEEE--ccCCCCCCCCceeE-EEEecCcHHHHhhhhHHHHhhceEEEEc-----C-cchhhhheecc
Confidence 99999999999888765 99999887433221 1111111 10 110 1111 1 12223344444
Q ss_pred ecc-hhhccCChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCC--cccccCC-CCCC-C-----CCCCC---C
Q 009372 414 APA-EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--SVYKTIP-NCEP-C-----RPLQR---S 480 (536)
Q Consensus 414 ~~~-~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~-~~~~-~-----~~~~~---~ 480 (536)
+.. ....++++|++.+.+...|++++++...+ ...++.+.+|...|+ |.|+|.. +... . .+... +
T Consensus 376 G~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP--~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~ 453 (498)
T KOG0685|consen 376 GREARHMETLSDEEVLEGLTKLLRKFLKNPEIP--KPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVT 453 (498)
T ss_pred CCcceehhhCCHHHHHHHHHHHHHHhcCCCCCC--CchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccC
Confidence 433 44568899999999999999999863332 234577888888877 6777654 2111 1 11111 1
Q ss_pred CCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009372 481 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 524 (536)
Q Consensus 481 p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~~~~~~ 524 (536)
.-+.|.||||+|+..++.+++||++||+|.|++|++.+..+.++
T Consensus 454 ~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~~~~ 497 (498)
T KOG0685|consen 454 GRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESSTSQ 497 (498)
T ss_pred CCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhhccC
Confidence 23479999999999999999999999999999999998887665
No 23
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=2.6e-33 Score=286.99 Aligned_cols=436 Identities=20% Similarity=0.244 Sum_probs=259.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccC--cchHHHHHHHhCCCCc-
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGINDR- 133 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~- 133 (536)
+.||||||||++||+||..|++.|++|+|||+++++||+++++. .+|+.+|.|+|++... ...+..+++++|++..
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~ 79 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPE 79 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcc
Confidence 36999999999999999999999999999999999999999987 5899999999998753 2336788899998732
Q ss_pred ccccccceeeeccCCCCccccc--------cCCCCCCcchh---HHHHHHh-------cCCCC---ChhHHHHhhcccch
Q 009372 134 LQWKEHSMIFAMPNKPGEFSRF--------DFPEVLPAPLN---GILAILR-------NNEML---TWPEKVKFAIGLLP 192 (536)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~---~~~~~~~-------~~~~~---~~~~~~~~~~~~~~ 192 (536)
.............+....+.-+ ......|.... .+...+. ....+ ...+..+....+.+
T Consensus 80 ~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (492)
T TIGR02733 80 AKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRP 159 (492)
T ss_pred cccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcCh
Confidence 1111111111111110000000 00001122111 1111100 00000 00111110000000
Q ss_pred hhhcccccccccccccHHHHHHHcC-CChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCC
Q 009372 193 AIIGGQAYVEAQDGLTVQEWMRKQG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPP 271 (536)
Q Consensus 193 ~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~ 271 (536)
. ..........++.+|+++.+ +.++..+.++..........++++.+.......+. +.....| ..++.|| +
T Consensus 160 ~----~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G--~~~~~GG-~ 231 (492)
T TIGR02733 160 D----TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQ-MAQAPHG--LWHLHGS-M 231 (492)
T ss_pred h----hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhh-ccccCCC--ceeecCc-H
Confidence 0 00011123578999998864 34555555555433323334555655544322211 1111122 2456666 8
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC-----cEEEcCEEEEccCHHHHhhcCCCcchhcHHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQLPENWKEMAYFK 346 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g-----~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~ 346 (536)
+.|+++|.+.++++|++|+++++|++|..+ ++++.+|.+.+| +++.||.||+|+++..+.+|+++...+..+.+
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~ 310 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRK 310 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHH
Confidence 999999999999999999999999999984 444555666554 57999999999999988899876555555667
Q ss_pred HHhccCCcc-EEEEEEEeeecccc-CcccccccCccccccCCcceeeeccccCcccccCCCccEEE-EEEecchhhccC-
Q 009372 347 RLEKLVGVP-VINIHIWVFFNCRF-DRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLE-LVFAPAEEWISC- 422 (536)
Q Consensus 347 ~l~~~~~~~-~~~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~- 422 (536)
.++++++.+ .+.+++. +++.. ........ ...+.... .+|...+..++..+|+++.++. ..+.+...|..+
T Consensus 311 ~~~~~~~s~~~~~v~l~--~~~~~~~~~~~~~~-~~~~~~~~--~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~ 385 (492)
T TIGR02733 311 RLKKLPEPSGAFVFYLG--VKRAALPVDCPPHL-QFLSDHQG--SLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLD 385 (492)
T ss_pred HHhcCCCCCceEEEEEe--ecccccCCCCCcce-eeccCCCc--eEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCC
Confidence 777777765 4466666 44311 10110000 11122211 3443333445667777877664 334444444322
Q ss_pred ------ChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcc-----------cccCCC---CCCCCCCCCCCC
Q 009372 423 ------SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-----------YKTIPN---CEPCRPLQRSPV 482 (536)
Q Consensus 423 ------~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~---~~~~~~~~~~p~ 482 (536)
-++++.+.+++.|++.+|+... . +.+....+|..+ |+.... ....++..++|+
T Consensus 386 ~~~y~~~k~~~~~~il~~le~~~p~l~~------~-i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i 458 (492)
T TIGR02733 386 EEDYTAKKKQYTQTIIERLGHYFDLLEE------N-WVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPV 458 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccc------c-EEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCC
Confidence 2466889999999999986322 2 334445566633 222211 112233346889
Q ss_pred CCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 009372 483 EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 516 (536)
Q Consensus 483 ~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~ 516 (536)
+||||||++++++ +++.||+.||+.+|++|+.
T Consensus 459 ~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 9999999999987 7999999999999999985
No 24
>PLN02976 amine oxidase
Probab=100.00 E-value=5.1e-34 Score=301.09 Aligned_cols=424 Identities=18% Similarity=0.194 Sum_probs=248.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcc--------h-HHHHH
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP--------N-IQNLF 125 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~--------~-~~~l~ 125 (536)
...++|+|||||++|+++|+.|.+.|++|+|||+++.+||++.+.....++.+|.|++++.+... + +..++
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la 770 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLIC 770 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHH
Confidence 34589999999999999999999999999999999999999988653457889999999986432 2 23467
Q ss_pred HHhCCCCcccccccceeeeccCCCCccccccCCCCCCcch-hHHHHHHhcCCCCChhHHHHhhcccchhhhccccccccc
Q 009372 126 GELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPL-NGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQ 204 (536)
Q Consensus 126 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (536)
+++|+.....-.. ...+... .+ ..++... ..+...+.. .+......... .. ...
T Consensus 771 ~qlGl~l~~~~~~-~~~yd~~--~G--------~~V~~e~~~~v~~~fn~--------lld~~~~~~~~---~g---~~a 825 (1713)
T PLN02976 771 AQLGLELTVLNSD-CPLYDVV--TG--------EKVPADLDEALEAEYNS--------LLDDMVLLVAQ---KG---EHA 825 (1713)
T ss_pred HhcCCccccccCC-CceeEcc--CC--------cCCCHHHHHHHHHHHHH--------HHHHHHHHHhh---cc---cCc
Confidence 8888875321110 0011100 01 1111110 001100000 00000000000 00 000
Q ss_pred ccccHHHHHHHcC------------------------------------C----C----hHHHHHHHHHHHhhc---CCC
Q 009372 205 DGLTVQEWMRKQG------------------------------------V----P----DRVTTEVFIAMSKAL---NFI 237 (536)
Q Consensus 205 ~~~s~~~~l~~~~------------------------------------~----~----~~~~~~~~~~~~~~~---~~~ 237 (536)
.+.++.++|+... . . ......++....... ++.
T Consensus 826 ~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa 905 (1713)
T PLN02976 826 MKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAA 905 (1713)
T ss_pred cCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccC
Confidence 1223333333100 0 0 000111111111111 123
Q ss_pred CCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcC--------CCCEEEE
Q 009372 238 NPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--------DGTVKNF 309 (536)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~--------~g~~~~v 309 (536)
+++++++..... ...+....|. ...+.|| +..|++.|++.+ .|++|++|++|.+.. ++.-+.|
T Consensus 906 ~L~eVSl~~~~q--d~~y~~fgG~-~~rIkGG-YqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtV 976 (1713)
T PLN02976 906 LLKEVSLPYWNQ--DDVYGGFGGA-HCMIKGG-YSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKV 976 (1713)
T ss_pred CHHHhhhhhhhc--ccccccCCCc-eEEeCCC-HHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEE
Confidence 444444432110 0001111222 3334454 778888877654 599999999999841 1122458
Q ss_pred EEcCCcEEEcCEEEEccCHHHHh--hcCCCcchhcHHHHHHhccCCccEEEEEEEeeeccccCcccccccCccccccCCc
Q 009372 310 LLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKLKNTYDHLLFSRSSL 387 (536)
Q Consensus 310 ~~~~g~~i~ad~VI~a~~~~~l~--~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (536)
++.+|+++.||+||+|+|+.+++ .+...+.+|.....+++.+.+....|+.+. |+++||+.....++ ....+...
T Consensus 977 tTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~Le--FdrpFW~~d~d~FG-~s~edtdl 1053 (1713)
T PLN02976 977 STSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLE--FPEVFWDDSVDYFG-ATAEETDL 1053 (1713)
T ss_pred EECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEE--eCCccccCCCCccc-cccccCCC
Confidence 88899899999999999999987 455666677777888999999989898876 99999986432222 22221112
Q ss_pred ceeeeccccCcccccCCCc-cEEEEEEec-chhhccCChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCC--c
Q 009372 388 LSVYADMSLTCKEYYNPNQ-SMLELVFAP-AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--S 463 (536)
Q Consensus 388 ~~~~~~~s~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~--~ 463 (536)
.+.++. .+....+.+. .+++++.++ +..+..++++++++.+++.|.++||....+.+. .+...+|...|+ |
T Consensus 1054 rG~~~~---~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv--~~vvTrWssDPySrG 1128 (1713)
T PLN02976 1054 RGQCFM---FWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPV--ASVVTDWGRDPFSYG 1128 (1713)
T ss_pred CceEEE---eccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcc--eeEEecCCCCCCcCc
Confidence 222111 1111112233 344444443 356778899999999999999999953222222 344455655566 4
Q ss_pred ccccC-CCC-CCCCCCCCCCCCC-eEEecccccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 009372 464 VYKTI-PNC-EPCRPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 520 (536)
Q Consensus 464 ~~~~~-~~~-~~~~~~~~~p~~~-l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~~ 520 (536)
.|.+. ++. ......+..|++| |||||++++..|+|+|+||++||+|||.+|+..|.+
T Consensus 1129 SYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1129 AYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred cccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 55543 453 2345567888876 999999999999999999999999999999998864
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=9.9e-33 Score=283.67 Aligned_cols=431 Identities=20% Similarity=0.252 Sum_probs=253.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCC--Cccccc
Q 009372 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN--DRLQWK 137 (536)
Q Consensus 60 VvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~--~~~~~~ 137 (536)
|||||||++||+||..|++.|++|+|||+++++||+++++. .+|+.+|.|++++... ..+.++++++|++ ..+.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMP-EALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccc-cHHHHHHHHcCCChhheEEEE
Confidence 69999999999999999999999999999999999999987 5899999999998632 3467888888854 223333
Q ss_pred ccceeeeccCCCCccccccCCCC-----------CCcchhHHHHHHhcCCCCChhHHH-Hhhcccch----hhhc-cccc
Q 009372 138 EHSMIFAMPNKPGEFSRFDFPEV-----------LPAPLNGILAILRNNEMLTWPEKV-KFAIGLLP----AIIG-GQAY 200 (536)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~-~~~~ 200 (536)
..+..+.+...++.. +.+... .|.....+..++...... +.... .....-.. .... ....
T Consensus 79 ~~~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQ--LDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERV-YREGYRKLGYVPFLSPRDLLRADLPQL 155 (502)
T ss_pred ECCCceEEECCCCCE--EEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHH-HHHHHHHHhhCCCCCHHHHHhHhhHhh
Confidence 322222222222221 111111 111111111111100000 00000 00000000 0000 0011
Q ss_pred ccccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHH
Q 009372 201 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVE 280 (536)
Q Consensus 201 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~ 280 (536)
.......++.+|+++. +..+..+.++.. ....++.++.+.+....+... ... .+ ...++.|| ...+++.|.+
T Consensus 156 ~~~~~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~---~~~-~~-g~~~~~gG-~~~l~~al~~ 227 (502)
T TIGR02734 156 LALLAWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPSIYALISA---LER-EW-GVWFPRGG-TGALVAAMAK 227 (502)
T ss_pred hhccCcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchHHHHHHHH---HHh-hc-eEEEcCCC-HHHHHHHHHH
Confidence 1123457888999876 444444444432 223445667666654433221 111 12 23356666 6899999999
Q ss_pred HHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCCCcchhcHHHHHHhccCCc-cEEE
Q 009372 281 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEKLVGV-PVIN 358 (536)
Q Consensus 281 ~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~~~~~~~~~~~~l~~~~~~-~~~~ 358 (536)
.++++|++|+++++|++|..+ ++++++|++.+|+++.||.||+|+++. +...|++....+....+.+++.++. +.+.
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~ 306 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFV 306 (502)
T ss_pred HHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeE
Confidence 999999999999999999974 556678999998889999999999984 4456776554333333445555543 4556
Q ss_pred EEEEeeec---cccCcc-c----c-cccCc--------cccccCCcceeee-ccccCcccccCCCccEEEE-EEecc---
Q 009372 359 IHIWVFFN---CRFDRK-L----K-NTYDH--------LLFSRSSLLSVYA-DMSLTCKEYYNPNQSMLEL-VFAPA--- 416 (536)
Q Consensus 359 v~l~~~~~---~~~~~~-~----~-~~~~~--------~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~-~~~~~--- 416 (536)
+++. ++ +++... . . ..+.. ..+++++. +|. .++..++..+|+++.++.+ +..+.
T Consensus 307 ~~lg--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~--~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~ 382 (502)
T TIGR02734 307 LYFG--LLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPS--LYLHRPTVTDPSLAPPGCENLYVLAPVPHLGT 382 (502)
T ss_pred EEEe--eccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCc--EEEEcCCCCCCCCCCCCCccEEEEEeCCCCCC
Confidence 6666 33 222110 0 0 00000 00112222 332 3355667888888776543 33332
Q ss_pred --hhhccCChHHHHHHHHHHHHHh-CCCCcccccccceEEEEEEeecCCcc-----------cccCC---CCCCCCCC-C
Q 009372 417 --EEWISCSDSEIIDATMKELAKL-FPDEISADQSKAKIVKYHVVKTPRSV-----------YKTIP---NCEPCRPL-Q 478 (536)
Q Consensus 417 --~~~~~~~~ee~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~---~~~~~~~~-~ 478 (536)
.+|.. .++++.+.+++.|++. +|+... .+ .+....+|..+ |+..+ +...++|. .
T Consensus 383 ~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~------~i-~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~ 454 (502)
T TIGR02734 383 ADVDWSV-EGPRYRDRILAYLEERAIPGLRD------RI-VVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNR 454 (502)
T ss_pred CCCCcHH-HHHHHHHHHHHHHHHhcCCChhH------he-EEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCC
Confidence 23533 2677999999999998 886322 23 33445555532 22211 12224443 3
Q ss_pred CCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 009372 479 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 518 (536)
Q Consensus 479 ~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l 518 (536)
.+|++|||+||++++++ +++.||+.||+.+|++|+..+
T Consensus 455 ~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~ 492 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDL 492 (502)
T ss_pred CCCCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999987 799999999999999999753
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=1.2e-31 Score=274.13 Aligned_cols=436 Identities=19% Similarity=0.274 Sum_probs=251.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccC----cch-HHHHHHHhCCCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA----YPN-IQNLFGELGIND 132 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~----~~~-~~~l~~~lg~~~ 132 (536)
+||||||||++||+||..|++.|++|+|||+++.+||+++++. .+|+.+|.|++.+.+. .++ +.+.+..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 5899999999999999999999999999999999999999986 5899999999987643 222 456666666432
Q ss_pred cccccccceeeeccCCCCccccccCCC-----------CCCcchhHHHHHHhcCC----------CCChhHHHHhhcccc
Q 009372 133 RLQWKEHSMIFAMPNKPGEFSRFDFPE-----------VLPAPLNGILAILRNNE----------MLTWPEKVKFAIGLL 191 (536)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 191 (536)
..........+..++ +.. +.+.. ..|.....+..++.... ...+.........+.
T Consensus 80 ~~~~~~~~~~~~~~~--g~~--~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (493)
T TIGR02730 80 ETIPDPVQIHYHLPN--GLN--VKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFF 155 (493)
T ss_pred cccCCCccEEEECCC--Cee--EeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHh
Confidence 221111111122211 110 11111 12222222222221100 000000000000000
Q ss_pred hhhhcccccccccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCC
Q 009372 192 PAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPP 271 (536)
Q Consensus 192 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~ 271 (536)
.. ......+......++.+++++. +.++..+.++......+...++.+.+.......+. ....+ ...++.|| .
T Consensus 156 ~~-~~~~~~~~~~~~~s~~~~~~~~-~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~~~-g~~~~~gG-~ 228 (493)
T TIGR02730 156 KH-PLACLGLAKYLPQNAGDIARRY-IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRHYG-GINYPKGG-V 228 (493)
T ss_pred hc-hhhhhHHHHHhhccHHHHHHHh-cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---ccccc-eEecCCCh-H
Confidence 00 0000000111236788888876 44444455544333222222334554433332221 11122 34566666 6
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCCCcchhcHHHHHHhc
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEK 350 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~~~~~~~~~~~~l~~ 350 (536)
..++++|.+.++++|++|+++++|++|..+ ++++.+|++.+|+++.||.||+|++++ ++.+|+++...+..+...+++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~ 307 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRN 307 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhh
Confidence 889999999999999999999999999874 567788999999889999999998775 555788765444444444455
Q ss_pred cCCc-cEEEEEEEeeeccccCcccccccCccccc-----cCCcceeeec-cccCcccccCCCccEEEEEE-ecchhhccC
Q 009372 351 LVGV-PVINIHIWVFFNCRFDRKLKNTYDHLLFS-----RSSLLSVYAD-MSLTCKEYYNPNQSMLELVF-APAEEWISC 422 (536)
Q Consensus 351 ~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 422 (536)
++.. +.+++++. .+.+...... ...+..+. ......+|.. ++..++..+|++++++.+.. .+...|..+
T Consensus 308 ~~~s~s~~~~~l~--l~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~ 384 (493)
T TIGR02730 308 YVKSPSFLSLHLG--VKADVLPPGT-ECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGL 384 (493)
T ss_pred ccCCCceEEEEEE--ecCccCCCCC-CccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCC
Confidence 5544 46677776 3322111000 00111111 0111223322 34566778888887765432 223444322
Q ss_pred -------ChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcc----------cccCCCC--C-CCC-CCCCCC
Q 009372 423 -------SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV----------YKTIPNC--E-PCR-PLQRSP 481 (536)
Q Consensus 423 -------~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~--~-~~~-~~~~~p 481 (536)
.++++.+.+++.|++++|+... . +.+....+|..+ |+..+.. . ..+ +..++|
T Consensus 385 ~~~~y~~~k~~~~~~il~~l~~~~p~l~~------~-I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~ 457 (493)
T TIGR02730 385 SPKDYEAKKEADAERIIDRLEKIFPGLDS------A-IDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTA 457 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHCCChhh------c-EEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCC
Confidence 2566889999999999986322 2 334444555543 2211110 0 111 345788
Q ss_pred CCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 009372 482 VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 518 (536)
Q Consensus 482 ~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l 518 (536)
++|||+||++++++ +++.+|+.||+.+|++|+.++
T Consensus 458 i~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 458 IPGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999987 799999999999999998754
No 27
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=9.8e-34 Score=288.98 Aligned_cols=434 Identities=28% Similarity=0.381 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCC-CCeeeeceeeeccCcchHHHHHHHhCCCCcccccccceeeec
Q 009372 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-GDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAM 145 (536)
Q Consensus 67 iaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~ 145 (536)
||||+||++|++.|++|+|||+++++||++.++.... |+.+|.|++++...++.+..++.++++...............
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFV 80 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceee
Confidence 6999999999999999999999999999999987543 899999999999888889999999998544332222111100
Q ss_pred cCCCCccccccCCCCCCcchhHH---HHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHHHcCCChHH
Q 009372 146 PNKPGEFSRFDFPEVLPAPLNGI---LAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRV 222 (536)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 222 (536)
................+...... ........ .+..................+........++.+++........+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (450)
T PF01593_consen 81 YWPFGDGRPPWPPSQLPRNLNEFAALISLARFFR--LLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFSEIF 158 (450)
T ss_dssp EEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccchhhhhhcccccc--ccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 00000000000000000000000 00000000 00000000000000000000111111223444444433222222
Q ss_pred HHHHHHHHHhhcCCCCCccccHHHHHHHHHHH-----hhhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcceEE
Q 009372 223 TTEVFIAMSKALNFINPDELSMQCILIALNRF-----LQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQK 297 (536)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~ 297 (536)
....+...............+.......+... ............. +.+...+...+...|++|++|++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~g~~i~l~~~V~~ 234 (450)
T PF01593_consen 159 RESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGM----GGLSLALALAAEELGGEIRLNTPVTR 234 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEET----TTTHHHHHHHHHHHGGGEESSEEEEE
T ss_pred HHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecc----cchhHHHHHHHhhcCceeecCCccee
Confidence 22112222222211222222222111111111 0011111222222 23444455555556789999999999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCcchhcHHHHHHhccCCccEEEEEEEeeeccccCccccc
Q 009372 298 IELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKLKN 375 (536)
Q Consensus 298 I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~--ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~ 375 (536)
|..++ +.+ .|++.+|+++.||+||+|+|+..+.+ +.|. .+....++++.+.+.+..++++. |+.++|.+..
T Consensus 235 I~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~--l~~~~~~a~~~~~~~~~~~v~l~--~~~~~~~~~~- 307 (450)
T PF01593_consen 235 IERED-GGV-TVTTEDGETIEADAVISAVPPSVLKNILLLPP--LPEDKRRAIENLPYSSVSKVFLG--FDRPFWPPDI- 307 (450)
T ss_dssp EEEES-SEE-EEEETTSSEEEESEEEE-S-HHHHHTSEEEST--SHHHHHHHHHTEEEEEEEEEEEE--ESSGGGGSTT-
T ss_pred ccccc-ccc-ccccccceEEecceeeecCchhhhhhhhhccc--ccccccccccccccCcceeEEEe--eecccccccc-
Confidence 99854 444 58899998999999999999999995 4443 34445677788888888888877 7777777632
Q ss_pred ccCccccccC-CcceeeeccccCcccccCCCccEEEEEEecc-hhhccCChHHHHHHHHHHHHHhCCCCcccccccceEE
Q 009372 376 TYDHLLFSRS-SLLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIV 453 (536)
Q Consensus 376 ~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~ 453 (536)
...+.+..+. .....+.+.+ ..+.. +++..+..++..+. ..|..++++++++.++++|++++|....+.+....+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 385 (450)
T PF01593_consen 308 DFFGILYSDGFSPIGYVSDPS-KFPGR-PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVT 385 (450)
T ss_dssp TESEEEEESSTSSEEEEEEEC-CTTSC-TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEE
T ss_pred cccceecccCccccccccccc-cCccc-ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccc
Confidence 1233333333 1222222222 21122 22333333444443 6788899999999999999999995222221111122
Q ss_pred EEEEeecCCcccccCCCCCC--CCCCCCCCC-CCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 009372 454 KYHVVKTPRSVYKTIPNCEP--CRPLQRSPV-EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 515 (536)
Q Consensus 454 ~~~~~~~p~~~~~~~~~~~~--~~~~~~~p~-~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll 515 (536)
+|....++.+.+.+...... .++.+.+|+ +||||||||+++++.++++||+.||++||++||
T Consensus 386 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 386 RWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp ECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 22222334444444333222 556678888 699999999999877899999999999999986
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.97 E-value=8.2e-29 Score=228.70 Aligned_cols=426 Identities=19% Similarity=0.230 Sum_probs=279.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCc--eEEEecCCccCceeeeeccCCCCeeeeceeeeccCcc---hHHHHHHHh
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHK--PLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP---NIQNLFGEL 128 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~--V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~l 128 (536)
....++|+|||||++||++||+|++++.+ |+|+|+.+|.||++++....+|+.+|.|+..+.+..+ .+.++++++
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 34567999999999999999999999765 5679999999999999555789999999999987666 578999999
Q ss_pred CCCCcccccccceeeeccCCCCccccccCCC----CCCcchhH-HHHHHhcCCCCChhHHHHhhcccchhhhcccc-ccc
Q 009372 129 GINDRLQWKEHSMIFAMPNKPGEFSRFDFPE----VLPAPLNG-ILAILRNNEMLTWPEKVKFAIGLLPAIIGGQA-YVE 202 (536)
Q Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 202 (536)
|+++.+........ ....++-+.. .+|..+.. +...+. ++...+.. .++.. ...+ .-.
T Consensus 88 Gl~~e~~~i~~~~p-------aaknr~l~~~~~L~~vP~sl~~s~~~~l~-----p~~k~L~~--a~l~e--~fr~~~~~ 151 (491)
T KOG1276|consen 88 GLEDELQPIDISHP-------AAKNRFLYVPGKLPTVPSSLVGSLKFSLQ-----PFGKPLLE--AFLRE--LFRKKVSD 151 (491)
T ss_pred CccceeeecCCCCh-------hhhheeeccCcccccCCcccccccccccC-----cccchhHH--HHHhh--hccccCCC
Confidence 99865432222111 0001111111 11221111 100000 00000000 00000 0000 012
Q ss_pred ccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCC---------------------
Q 009372 203 AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS--------------------- 261 (536)
Q Consensus 203 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------------- 261 (536)
+..++|+.+|++++ +.+++.+.++++++.++++.|++++|+...+..+... +..+|+
T Consensus 152 ~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~-Eqk~Gsi~~G~i~~~~~~~~~k~~e~~ 229 (491)
T KOG1276|consen 152 PSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKV-EQKHGSIILGTIRAKFARKRTKKAETA 229 (491)
T ss_pred CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHH-HHhccchhHHHHHHHHHhhcCCCccch
Confidence 34579999999997 7789999999999999999999999998766544331 122222
Q ss_pred ---------eEEE-ecCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCC-CEEEEEEcCCc-EEEcCEEEEccCHH
Q 009372 262 ---------KMAF-LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGN-VIDGDAYVFATPVD 329 (536)
Q Consensus 262 ---------~~~~-~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g-~~~~v~~~~g~-~i~ad~VI~a~~~~ 329 (536)
...+ ..|| .+.+.+++.+.|.+..+.|.+.-++..+.....+ +..+++..++. ....+++..+.++.
T Consensus 230 ~~~~~~~e~~~~~sl~gG-le~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~ 308 (491)
T KOG1276|consen 230 LSAQAKKEKWTMFSLKGG-LETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAV 308 (491)
T ss_pred hhhhhcccccchhhhhhh-HhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchH
Confidence 0111 1233 6788999999999888999999999999865444 55455566664 34466667799999
Q ss_pred HHhhcCCCcchhcHHHHHHhccCCccEEEEEEEeeeccc-cCcccccccCcccc--cc--CCcceeeeccccCcccccCC
Q 009372 330 ILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWVFFNCR-FDRKLKNTYDHLLF--SR--SSLLSVYADMSLTCKEYYNP 404 (536)
Q Consensus 330 ~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~~~~s~~~~~~~~~ 404 (536)
.+.++++.... .....+.+++|.++..+++. |+.. .+.++ .+++.++. +. ...+++.+|. ..++...++
T Consensus 309 k~a~ll~~~~~--sls~~L~ei~y~~V~vVn~~--yp~~~~~~pl-~GFG~LvPs~~~~~~~~LG~ifdS-~~Fp~~~~s 382 (491)
T KOG1276|consen 309 KLAKLLRGLQN--SLSNALSEIPYVPVAVVNTY--YPKEKIDLPL-QGFGLLVPSEPKNGFKTLGTIFDS-MLFPDRSPS 382 (491)
T ss_pred Hhhhhccccch--hhhhhhhcCCCCceEEEEEe--ccCccccccc-ccceeeccCCCCCCCceeEEEeec-ccCCCCCCC
Confidence 99999987532 33477889999999999887 5442 34444 35665555 22 3456776663 344444444
Q ss_pred CccEEEEEEec-chhh--ccCChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccccCCCCCCCCCCC---
Q 009372 405 NQSMLELVFAP-AEEW--ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQ--- 478 (536)
Q Consensus 405 ~~~~~~~~~~~-~~~~--~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--- 478 (536)
+ .++.++++. ...| ...+.||+++.+.++|+++++....+. ....+.|+.+++.|..|+..+....
T Consensus 383 ~-~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~-------~~~v~l~~~ciPqy~vGh~~~le~a~~~ 454 (491)
T KOG1276|consen 383 P-KVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPV-------SVNVHLWKNCIPQYTVGHDDVLEAAKSM 454 (491)
T ss_pred c-eEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcc-------cccceehhhcccceecchHHHHHHHHHH
Confidence 3 233333322 2333 345789999999999999998754431 1222368888999888865543332
Q ss_pred CC--CCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 009372 479 RS--PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 515 (536)
Q Consensus 479 ~~--p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll 515 (536)
.+ +-.+|+++|.|+.. .++..+++||+++|.+|+
T Consensus 455 l~~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 455 LTDSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred HHhCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 22 23589999999886 589999999999999875
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=4.6e-27 Score=237.90 Aligned_cols=430 Identities=22% Similarity=0.271 Sum_probs=234.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhC-CCCc-
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELG-INDR- 133 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg-~~~~- 133 (536)
+.+||||||||++||+||..|+++|++|+|||+++++||++++.. ..|+.+|+|++++.... ...++.+++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~--~~~~~~~l~~l~~~~ 78 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPD--PGPLFRELGNLDADG 78 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCc--hHHHHHHhccCcccc
Confidence 468999999999999999999999999999999999999999987 45999999998876333 336777777 5443
Q ss_pred ccccccceeeeccCCCCccccc---------cCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcc-cchhhhc-------
Q 009372 134 LQWKEHSMIFAMPNKPGEFSRF---------DFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIG-LLPAIIG------- 196 (536)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------- 196 (536)
+.+...+..+.+...++..... .+....|.....+..++.. ..+....... +......
T Consensus 79 l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (487)
T COG1233 79 LDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRL-----LARLYELLAALLLAPPRSELLLVPD 153 (487)
T ss_pred eeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHH-----HHHhhHHHHhhcCCCchhhhhhccc
Confidence 3333322222222222221100 0000111111111111110 0000000000 0000000
Q ss_pred cc-cc--ccccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCcc
Q 009372 197 GQ-AY--VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPER 273 (536)
Q Consensus 197 ~~-~~--~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~ 273 (536)
.. .. .......+..+++... +..+..+..+........ ..+...++... +..... ....+.++.|| ++.
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~---~~~~~~--~~~G~~~p~GG-~~a 225 (487)
T COG1233 154 TPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPALYL---LLSHLG--LSGGVFYPRGG-MGA 225 (487)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhHHHH---HHHHhc--ccCCeeeeeCC-HHH
Confidence 00 00 0111235566666665 555555554444322223 45555441111 111122 22335677777 899
Q ss_pred chHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchh---cHHH---HH
Q 009372 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKE---MAYF---KR 347 (536)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~---~~~~---~~ 347 (536)
++++|++.++++|++|+++++|++|.. ++|+.+++++.+|..+++|.||++........+++..... ..+. .+
T Consensus 226 l~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a 304 (487)
T COG1233 226 LVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPALLARLLGEARRPRYRGSYLKSLSA 304 (487)
T ss_pred HHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCchhhhhhhhhhhhhhccccchhhhhHH
Confidence 999999999999999999999999998 4555567888888779999999999885555555543221 0000 11
Q ss_pred Hh---ccCC--ccEEEEEEEeeeccccCcccccccCccccccCCcceeeeccccCcccccCCCccEEEE--EEec-chhh
Q 009372 348 LE---KLVG--VPVINIHIWVFFNCRFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLEL--VFAP-AEEW 419 (536)
Q Consensus 348 l~---~~~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~~-~~~~ 419 (536)
+. .+.. .+...... .+..++++.+...++. .....+.+. ...++..+|+.+|++.+.+.. ...+ ...|
T Consensus 305 l~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~g~~~~~~-v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~ 380 (487)
T COG1233 305 LSLYLGLKGDLLPLAHHTT--ILLGDTREQIEEAFDD-RAGRPPPLY-VSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDY 380 (487)
T ss_pred HHhccCCCCCCcchhhcce--EecCCcHHHHHHHhhh-hcCCCCceE-EeCCCCCCCccCCCCCcceeeeeeecCcCCCh
Confidence 11 1111 01111111 1333333333222222 222222111 224566888899888752212 2222 1222
Q ss_pred ccCChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcccc-----------c---CCCCCCCCCCC-CCCCCC
Q 009372 420 ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYK-----------T---IPNCEPCRPLQ-RSPVEG 484 (536)
Q Consensus 420 ~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----------~---~~~~~~~~~~~-~~p~~~ 484 (536)
...++++.+. +..++++.|+... .+ .+....+|..+.. . ..+....+|.. .+|++|
T Consensus 381 -~~~~~~~~~~-~~~~~~~~p~~~~------~i-v~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~ 451 (487)
T COG1233 381 -DELKESLADA-IDALEELAPGLRD------RI-VAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKG 451 (487)
T ss_pred -HHHHHHHHHH-HHHHhhcCCCccc------ce-eEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCc
Confidence 2234555555 6678888886322 23 3333444442211 1 11222334443 588999
Q ss_pred eEEecccccCCCCCchhHHHHHHHHHHHHHHHH
Q 009372 485 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 517 (536)
Q Consensus 485 l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~ 517 (536)
||+||++++++ +++.++..++..++..+...
T Consensus 452 LYl~Ga~t~PG--~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 452 LYLVGASTHPG--GGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred eEEeCCcCCCC--CCcchhhhhHHHHHhhhccc
Confidence 99999999998 89999987777777666543
No 30
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=208.51 Aligned_cols=282 Identities=21% Similarity=0.287 Sum_probs=188.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeec---cCCCCeeeeceeeecc-CcchHHHHHHHhCC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK---DGDGDWYETGLHIFFG-AYPNIQNLFGELGI 130 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~---~~~g~~~d~G~~~~~~-~~~~~~~l~~~lg~ 130 (536)
.+.++|+|||+|++||+|||.|+++ ++|+++|+.+++||++++.. +.+|..+|+|.+++.+ .|+++..+++++|+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv 84 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGV 84 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCC
Confidence 3567999999999999999999987 79999999999999999974 4567899999999886 89999999999999
Q ss_pred CCcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhh--ccccccccccccc
Q 009372 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII--GGQAYVEAQDGLT 208 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s 208 (536)
+.+. ..+.+.+....+. +++... +. +..++.....+--.....++..++.... ..........+.+
T Consensus 85 ~t~a----s~Msf~v~~d~gg---lEy~g~-tg----l~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~t 152 (447)
T COG2907 85 DTKA----SFMSFSVSLDMGG---LEYSGL-TG----LAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTT 152 (447)
T ss_pred CCcc----cceeEEEEecCCc---eeeccC-CC----ccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCcc
Confidence 8642 2333433333322 112110 00 0001111111100111111111211111 1111122345689
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCC-------CeEEEecCCCCccchHHHHHH
Q 009372 209 VQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG-------SKMAFLDGNPPERLCLPIVEH 281 (536)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~gg~~~~l~~~l~~~ 281 (536)
+.+||++++++..+.+.++.++...+|..+..+++.......+ .+.. .+| ..|..+.|| ....++.|.+.
T Consensus 153 l~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~-nhGll~l~~rp~wrtV~gg-S~~yvq~laa~ 229 (447)
T COG2907 153 LAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTD-NHGLLYLPKRPTWRTVAGG-SRAYVQRLAAD 229 (447)
T ss_pred HHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHh-ccCceecCCCCceeEcccc-hHHHHHHHhcc
Confidence 9999999999999999999999999988777777665544333 2222 222 345566665 44555555543
Q ss_pred HHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCcchhcHHHHHHhccCCccEEEE
Q 009372 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINI 359 (536)
Q Consensus 282 l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v 359 (536)
+ +.+|.++++|.+|.+-.+|.+ ++..+|++-++|.||+||.++....||+++. ...++.+..+.|.....+
T Consensus 230 ~---~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~s--p~e~qll~a~~Ys~n~aV 300 (447)
T COG2907 230 I---RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEPS--PEERQLLGALRYSANTAV 300 (447)
T ss_pred c---cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCCC--HHHHHHHHhhhhhhceeE
Confidence 3 457999999999998778854 6667798899999999999988888888763 234467777887765444
No 31
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.95 E-value=2e-24 Score=200.54 Aligned_cols=247 Identities=21% Similarity=0.271 Sum_probs=162.1
Q ss_pred CCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCH-HHHhhcCCC
Q 009372 259 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQLPE 337 (536)
Q Consensus 259 ~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~-~~l~~ll~~ 337 (536)
+...|.|+.|| +..++.++++.+++.|.+|+++..|.+|..+ +|++++|.++||++++++.||+.+.+ .++.+|+|.
T Consensus 252 ~~g~~~Yp~GG-~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 252 HKGGWGYPRGG-MGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred cCCcccCCCCC-hhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCC
Confidence 44567888888 8999999999999999999999999999985 59999999999999999999986655 577799999
Q ss_pred cchhcHHHHHHhccCCc-cEEEEEEEee--eccccCccccc--------------------ccCccccccCCcceeeecc
Q 009372 338 NWKEMAYFKRLEKLVGV-PVINIHIWVF--FNCRFDRKLKN--------------------TYDHLLFSRSSLLSVYADM 394 (536)
Q Consensus 338 ~~~~~~~~~~l~~~~~~-~~~~v~l~~~--~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 394 (536)
..+|.++ .++++.+. +..+..+-.| .+..=..+++. .......+..+.+- ...+
T Consensus 330 e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~-~siP 406 (561)
T KOG4254|consen 330 EALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIE-LSIP 406 (561)
T ss_pred ccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEE-Eecc
Confidence 8888775 34444333 2222111100 00000111100 00000011122221 1235
Q ss_pred ccCcccccCCCccEEEEEEec-chhhccCC-------hHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCC----
Q 009372 395 SLTCKEYYNPNQSMLELVFAP-AEEWISCS-------DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR---- 462 (536)
Q Consensus 395 s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~---- 462 (536)
|..++...|++++++..+... ..+|.... ++++++.+++.+++.+|... .+++.+.+ -+|.
T Consensus 407 S~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfs------ssv~~~dv-gTP~t~qr 479 (561)
T KOG4254|consen 407 SSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFS------SSVESYDV-GTPPTHQR 479 (561)
T ss_pred cccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCcc------ceEEEEec-CCCchhhH
Confidence 678889999999988765322 25565332 57899999999999999843 23444443 3443
Q ss_pred ------ccccc-CCCC---CCCCCCC-----CCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009372 463 ------SVYKT-IPNC---EPCRPLQ-----RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 521 (536)
Q Consensus 463 ------~~~~~-~~~~---~~~~~~~-----~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~~~ 521 (536)
|.+.. ..+. .-.+|.+ ++|+++||+||+.++++ |++.+|- |..+|...+...+..
T Consensus 480 ~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~~ 549 (561)
T KOG4254|consen 480 FLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKLY 549 (561)
T ss_pred HhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhhH
Confidence 32222 1121 1234444 89999999999999998 8888885 999998877754443
No 32
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.93 E-value=2e-25 Score=193.99 Aligned_cols=325 Identities=20% Similarity=0.231 Sum_probs=201.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCcc-cc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL-QW 136 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~-~~ 136 (536)
.+|+|||+||+||+||+.|+..|++|+|+||..-+|||..+.. ..+..+|.|+++|......+.++++.+.-+--+ .|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3799999999999999999999999999999999999998865 456679999999986666666665554321100 00
Q ss_pred cccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHHHc
Q 009372 137 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (536)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (536)
.+ . +-++ +.-
T Consensus 81 ~~-----------~----------------------------------------------------------~~~~-~~~ 90 (331)
T COG3380 81 TP-----------A----------------------------------------------------------VWTF-TGD 90 (331)
T ss_pred cc-----------c----------------------------------------------------------cccc-ccC
Confidence 00 0 0000 000
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcceE
Q 009372 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQ 296 (536)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~ 296 (536)
+.+ -..++. .|+.-.++.. |.+.|.. ..+|.++++|+
T Consensus 91 ~~~-----------------~~~d~~---------------------pyvg~pgmsa----lak~LAt-dL~V~~~~rVt 127 (331)
T COG3380 91 GSP-----------------PRGDED---------------------PYVGEPGMSA----LAKFLAT-DLTVVLETRVT 127 (331)
T ss_pred CCC-----------------CCCCCC---------------------ccccCcchHH----HHHHHhc-cchhhhhhhhh
Confidence 000 001110 0111111233 4443332 47899999999
Q ss_pred EEEEcCCCCEEEEEEcCC-cEEEcCEEEEccCHHHHhhcCCC--cchhcHHHHHHhccCCccEEEEEEEeeeccccCccc
Q 009372 297 KIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPE--NWKEMAYFKRLEKLVGVPVINIHIWVFFNCRFDRKL 373 (536)
Q Consensus 297 ~I~~~~~g~~~~v~~~~g-~~i~ad~VI~a~~~~~l~~ll~~--~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~ 373 (536)
+|...+++ ..+++++| +...+|.||+|.|...+..||.. ...|..++..+..+.|.|+....+. |+.+..+++
T Consensus 128 ~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg--~~q~l~~P~ 203 (331)
T COG3380 128 EVARTDND--WTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLG--YPQPLDRPW 203 (331)
T ss_pred hheecCCe--eEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhc--CCccCCCCC
Confidence 99986554 34888666 46789999999999877887743 3456667788888888887666665 666666655
Q ss_pred ccccCccccccCCcceeeeccccCcccccCCCcc-EEEEEEecchhhccCChHHHHHHHHHHHHHhCCCCcccccccceE
Q 009372 374 KNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQS-MLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKI 452 (536)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~ 452 (536)
.+ ....+.++-.+-.+. .-+.+.+.+.. ++.....-+......++|+.+..+......+.+..... +
T Consensus 204 ~G----~~vdg~~laWla~d~--sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~------p 271 (331)
T COG3380 204 PG----NFVDGHPLAWLARDA--SKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPE------P 271 (331)
T ss_pred CC----cccCCCeeeeeeccc--cCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCc------c
Confidence 32 222333332222221 22334333332 22221111233346678888888888888888743221 1
Q ss_pred EEEEEeecCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 009372 453 VKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 518 (536)
Q Consensus 453 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l 518 (536)
.....+.|+|+.+....+.... ...+-.+||+||||++. |-+|||++||..+|..|++.|
T Consensus 272 ~~s~~H~WrYA~P~~~~~~~~L---~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 272 DWSDAHRWRYAIPNDAVAGPPL---DADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hHHHhhccccccccccccCCcc---ccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 2234567777776554332111 11223469999999998 689999999999999999754
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.88 E-value=4.6e-20 Score=183.42 Aligned_cols=437 Identities=16% Similarity=0.202 Sum_probs=231.5
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHC----CCceEEEecCCccCceeeeecc-CCCCeeeeceeeeccCcchHHHHHHH
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKD-GDGDWYETGLHIFFGAYPNIQNLFGE 127 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~----g~~V~vlE~~~~~GG~~~~~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~ 127 (536)
......+|+|||||+|||+||++|.+. |.+|+|||+++.+||++.++.. .+|+.++.|.. +...+..+.+++++
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~ 96 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRS 96 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHh
Confidence 445568999999999999999999996 6799999999999999987542 45777777755 46667788888888
Q ss_pred hCCCCcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccc
Q 009372 128 LGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGL 207 (536)
Q Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (536)
+.-.........+.++.+.........+......... + ....+.+..+.+.. +.+.+.. ...++++.
T Consensus 97 ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~-------~-d~~~~~L~~k~r~~--Ll~l~l~---~e~~Ld~~ 163 (576)
T PRK13977 97 IPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEI-------L-DTDKFGLSKKDRKE--LLKLLLT---PEEKLDDK 163 (576)
T ss_pred ccccCCCCcccccceeeeecCCcccceeeEEcCCCCE-------E-ECcCCCCCHHHHHH--HHHHhcc---CHHHhCCc
Confidence 7422211111111111111111111000000000000 0 01112222222111 1111111 12356789
Q ss_pred cHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhc----CCCeEEEecCCCCccchHHHHHHHH
Q 009372 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK----HGSKMAFLDGNPPERLCLPIVEHIQ 283 (536)
Q Consensus 208 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~gg~~~~l~~~l~~~l~ 283 (536)
++.+|+....+... +-.+...+++.. ...|+..+..++..++..- ......+........++..|.+.|+
T Consensus 164 tI~d~f~~~Ff~t~-----Fw~~w~t~FaF~-~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le 237 (576)
T PRK13977 164 TIEDWFSPEFFETN-----FWYYWRTMFAFE-KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLE 237 (576)
T ss_pred CHHHHHhhcCchhH-----HHHHHHHHHCCc-hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHH
Confidence 99999998654332 222333333333 6678888877777664332 2233444555557899999999999
Q ss_pred HcCcEEEeCcceEEEEEc-CC--CCEEEEEEcC-Cc-----EEEcCEEEEccCHHHHhhcCC-----Ccchh---c--HH
Q 009372 284 SLGGEVRLNSRVQKIELN-DD--GTVKNFLLTN-GN-----VIDGDAYVFATPVDILKLQLP-----ENWKE---M--AY 344 (536)
Q Consensus 284 ~~G~~i~~~~~V~~I~~~-~~--g~~~~v~~~~-g~-----~i~ad~VI~a~~~~~l~~ll~-----~~~~~---~--~~ 344 (536)
++||+|+++++|++|..+ ++ +.+++|.+.. |+ ....|.||+|+|.-+-..-++ ++... . ..
T Consensus 238 ~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~~~~~~~~~w~L 317 (576)
T PRK13977 238 DHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAPLNRELGGSWTL 317 (576)
T ss_pred hCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCCCCCCCCccHHH
Confidence 999999999999999975 23 5677887753 32 345889999998865343322 11100 1 12
Q ss_pred HHHHhccC--------------CccEEEEEEEeeecc-ccCcccc-----ccc-C-----cc-ccccCCc-ceeeecccc
Q 009372 345 FKRLEKLV--------------GVPVINIHIWVFFNC-RFDRKLK-----NTY-D-----HL-LFSRSSL-LSVYADMSL 396 (536)
Q Consensus 345 ~~~l~~~~--------------~~~~~~v~l~~~~~~-~~~~~~~-----~~~-~-----~~-~~~~~~~-~~~~~~~s~ 396 (536)
++.+..-. ...... +.+.++. .|-+.+. .+. + ++ .+.++++ .++.....+
T Consensus 318 W~~la~~~~~fG~P~~F~~~~~~s~w~S--fTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~dS~W~~s~~v~~QP 395 (576)
T PRK13977 318 WKNIAAQSPEFGNPDKFCGDIPESNWES--FTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFKDSNWLMSITVNRQP 395 (576)
T ss_pred HHHHHhcCccCCChhhhcCCcccceEEE--EEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEecCCeeEEEEecCCC
Confidence 33332211 000111 1111221 1111110 011 1 11 1233332 233322222
Q ss_pred CcccccCCCccEEEEEEe--cc--hh-----hccCChHHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCccccc
Q 009372 397 TCKEYYNPNQSMLELVFA--PA--EE-----WISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKT 467 (536)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~--~~--~~-----~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 467 (536)
..+.. |++ ..+.+.|+ +. .+ ..+++-+||.++++-+|.- |....+. .......-.-..-|+....+
T Consensus 396 ~F~~Q-p~d-~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~~--~~~~~~~-i~~~~~~~ip~~MP~ita~f 470 (576)
T PRK13977 396 HFKNQ-PKN-ETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLGV--PEDKIEE-LAADSANTIPVMMPYITSQF 470 (576)
T ss_pred CCCCC-CCC-cEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcCC--chhhHHH-HHhhcCceEeeccchhhhhh
Confidence 22222 222 33333332 21 22 2367789999888877621 1100000 00000111123345555555
Q ss_pred CCCCCCCCCCCCCC-CCCeEEecccccCCCC--CchhHHHHHHHHHHHHHHH
Q 009372 468 IPNCEPCRPLQRSP-VEGFYLAGDYTKQKYL--ASMEGAVLSGKLCAQAIVQ 516 (536)
Q Consensus 468 ~~~~~~~~~~~~~p-~~~l~~aG~~~~~~~~--~~i~gA~~SG~~aA~~ll~ 516 (536)
.|.....||..... ..||.|.|+-+....- -++|-++++|+.|+-+|+.
T Consensus 471 ~pR~~gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 471 MPRAKGDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred CCCCCCCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 55555566664433 5799999999876422 2899999999999999876
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.78 E-value=2.8e-17 Score=162.57 Aligned_cols=259 Identities=15% Similarity=0.175 Sum_probs=158.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeecc-------------------CCCCeeeeceeeec
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD-------------------GDGDWYETGLHIFF 115 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~-------------------~~g~~~d~G~~~~~ 115 (536)
++++||||||+|++|+.+|..|++.|++|+++|+++..||++++... ...+.+|+.++.+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 46799999999999999999999999999999999999999998621 02244556666655
Q ss_pred cCcchHHHHHHHhCCCCcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhh-
Q 009372 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAI- 194 (536)
Q Consensus 116 ~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 194 (536)
.. ..+..++.+.++...+++...+..+... .++++.. .|..... .+. ...+.+.++.+..+ ++...
T Consensus 82 ~~-G~lv~lL~~s~v~ryleF~~l~g~~v~~-~~g~~~~------vP~s~~~---~~~-s~ll~l~eKr~l~k-fl~~v~ 148 (443)
T PTZ00363 82 AS-GELVKILLHTDVTRYLEFKVIDGSYVYQ-KEGKIHK------VPATDME---ALS-SPLMGFFEKNRCKN-FLQYVS 148 (443)
T ss_pred cC-ChHHHHHhhcCccceeeeEEeceEEEEe-cCCeEEE------CCCCHHH---Hhh-CCCcchhhHHHHHH-HHHHHH
Confidence 33 3466788888888777665544433320 1122111 2221111 111 12233333322221 11111
Q ss_pred --hcccc-ccc--ccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh--hcCC-CeEEEe
Q 009372 195 --IGGQA-YVE--AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFL 266 (536)
Q Consensus 195 --~~~~~-~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~ 266 (536)
....+ ... ..+..++.+|+++.++++...+.+ ..........+..+.+....+..+..+.. ..+| ....|+
T Consensus 149 ~~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i-~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp 227 (443)
T PTZ00363 149 NYDENDPETHKGLNLKTMTMAQLYKKFGLEDNTIDFV-GHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYP 227 (443)
T ss_pred hhccCChhhhcccCcccCCHHHHHHHhCCCHHHHHHH-HHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceee
Confidence 11110 111 134689999999999887655433 32222221111111122222222222221 2233 234566
Q ss_pred cCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCH
Q 009372 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 328 (536)
Q Consensus 267 ~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~ 328 (536)
.+| ++.|.++|++.+...|++++++++|++|..++++++++|++.+|++++|+.||+....
T Consensus 228 ~gG-~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 228 LYG-LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred CCC-HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence 666 7899999999999999999999999999986667778899999999999999985443
No 35
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.77 E-value=9.3e-18 Score=170.20 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=51.1
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~ 336 (536)
|.+++.+|.+.+.++|++|+.+++|++|+. +++ +.|++.+| ++.||+||+|++.|. ..+++
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~--~~v~t~~g-~v~A~~VV~Atga~s-~~l~~ 242 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP--AVVRTPDG-QVTADKVVLALNAWM-ASHFP 242 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc--eEEEeCCc-EEECCEEEEcccccc-cccCh
Confidence 789999999999999999999999999975 333 34788777 799999999999986 44543
No 36
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.70 E-value=6.6e-16 Score=155.01 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=49.9
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
+..++..|.+.+.++|++++.+++|++|+..+++.++.|++.+| ++.+++||+|++.+.
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 56778888999999999999999999998644566667888888 799999999998875
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.65 E-value=6.5e-15 Score=148.46 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=49.5
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
+..++..|.+.+.++|++|+++++|++|+.+ ++.++.|++.++ ++.||+||+|+|.+.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 6788999999999999999999999999874 444556777666 799999999999986
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.64 E-value=8.1e-15 Score=144.94 Aligned_cols=62 Identities=27% Similarity=0.396 Sum_probs=51.2
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll 335 (536)
+.++++.|.+.++++|++|+++++|++|..+ ++.+.+|.+.+|+ +.||+||+|+|+++ ..|+
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~ 207 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLL 207 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGH-HHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccc-eeee
Confidence 6789999999999999999999999999984 5556679999995 99999999999987 4443
No 39
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.63 E-value=4.6e-14 Score=141.79 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=46.2
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC-----cEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g-----~~i~ad~VI~a~~~~~ 330 (536)
+.+++..|.+.+.+.|++|+++++|++|..++++ + .+.+.++ .+++||+||+|+|+++
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~-~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGG-V-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 5678889999999999999999999999874333 3 2443332 3799999999999986
No 40
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.62 E-value=1.7e-14 Score=143.68 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=48.2
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
+..++..|.+.+.++|++++.+++|++|..+ ++.+ .|++.+| ++.||+||+|++.+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcch
Confidence 6788899999999999999999999999874 3433 4777776 799999999999875
No 41
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.62 E-value=4.9e-14 Score=136.26 Aligned_cols=240 Identities=17% Similarity=0.157 Sum_probs=135.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCe-eeeceeeeccCcchHHHHHHHhCCCCccc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDW-YETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~-~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (536)
++||+|||||++||++|+.|++.|.+|+|+|+++.+||.+.+.. ..+.. .+.|+|++......+.+++.++.--..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~-- 77 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDYISPFFELNN-- 77 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHHHHhhccccc--
Confidence 46999999999999999999999999999999999999988754 34443 589999998777777777777531111
Q ss_pred ccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHH--
Q 009372 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM-- 213 (536)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-- 213 (536)
+.. ..... ..+.+.. .|-..+.+..+.... ..+ .+...+........ +....++.+|.
T Consensus 78 ~~~-~~~~~---~~g~~~~------~P~~~~~i~~l~~~~----~~~---~~~~~l~~~~~~~~---~~~~~~~~e~~d~ 137 (377)
T TIGR00031 78 YQH-RVLAL---YNNLDLT------LPFNFNQFRKLLGVK----DAQ---ELQNFFNAQFKYGD---HVPLEELQEIADP 137 (377)
T ss_pred eeE-EEEEE---ECCeEEc------cCCCHHHHHHhcccc----hHH---HHHHHHHHHhhccc---CCCCCCHHHHHHH
Confidence 111 11111 1122211 222222232222110 000 00001000000000 01113445554
Q ss_pred -HHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhc--CC--CeEEEecCCCCccchHHHHHHHHH-cCc
Q 009372 214 -RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK--HG--SKMAFLDGNPPERLCLPIVEHIQS-LGG 287 (536)
Q Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g--~~~~~~~gg~~~~l~~~l~~~l~~-~G~ 287 (536)
.+. +...+.+.++.+.....|+.+++++++.... .+.-.+... +. .-..++.+| .+.|.+.+.+ .++
T Consensus 138 ~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~~d~~yf~d~~q~~P~~G-----yt~~~~~ml~~~~i 210 (377)
T TIGR00031 138 DIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLSEDSSYFPDRYQGLPKGG-----YTKLFEKMLDHPLI 210 (377)
T ss_pred HHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEecCCCCccccccccccccc-----HHHHHHHHHhcCCC
Confidence 444 6677888888899999999999999987553 111101100 00 111223332 4444444443 468
Q ss_pred EEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHh
Q 009372 288 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (536)
Q Consensus 288 ~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~ 332 (536)
+|++|+.+..+.. .+++ +....+ .+. +.||.|.+...+-
T Consensus 211 ~v~l~~~~~~~~~-~~~~---~~~~~~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 211 DVKLNCHINLLKD-KDSQ---LHFANK-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred EEEeCCccceeec-cccc---eeeccc-ccc-CcEEEecCchHHH
Confidence 9999997777764 2332 333334 344 8899988776533
No 42
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.62 E-value=3.2e-14 Score=128.57 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=57.4
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEc-CCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCC
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~-~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~ 337 (536)
+.+-++.+.+.+.+.|+.|+.+..|+.+... +++..+.|.|.+|..+.|+++|+|+|+|+ .++|+.
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi-~klL~~ 218 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI-NKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH-HhhcCc
Confidence 5678889999999999999999999999853 45666789999997799999999999998 778875
No 43
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=1.1e-14 Score=136.00 Aligned_cols=168 Identities=24% Similarity=0.353 Sum_probs=108.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCccc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (536)
..+||+|||||+|||.||..+++.|.+|+|+|+.+.+|=.+.-. -|+.+.........+++.+.+-...
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~s---------GgGrCN~Tn~~~~~~~ls~~p~~~~-- 70 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMS---------GGGRCNFTNSEAPDEFLSRNPGNGH-- 70 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEec---------CCCCccccccccHHHHHHhCCCcch--
Confidence 46899999999999999999999999999999999877655431 1111111111114455544321110
Q ss_pred ccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHHH
Q 009372 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (536)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (536)
+ +... +......++.+|++.
T Consensus 71 ----------------f---------------l~sa-----------------------------l~~ft~~d~i~~~e~ 90 (408)
T COG2081 71 ----------------F---------------LKSA-----------------------------LARFTPEDFIDWVEG 90 (408)
T ss_pred ----------------H---------------HHHH-----------------------------HHhCCHHHHHHHHHh
Confidence 0 0000 011223567777777
Q ss_pred cCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCcce
Q 009372 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (536)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V 295 (536)
+|+.-+. ...|.. |+.......+++.|.+.+++.||+|+++++|
T Consensus 91 ~Gi~~~e----------------------------------~~~Gr~--Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v 134 (408)
T COG2081 91 LGIALKE----------------------------------EDLGRM--FPDSDKASPIVDALLKELEALGVTIRTRSRV 134 (408)
T ss_pred cCCeeEE----------------------------------ccCcee--cCCccchHHHHHHHHHHHHHcCcEEEecceE
Confidence 7654211 011111 1111114678999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHh
Q 009372 296 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (536)
Q Consensus 296 ~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~ 332 (536)
.+|..++++ ..+.+++|++|+||.+|+|+|.-...
T Consensus 135 ~~v~~~~~~--f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 135 SSVEKDDSG--FRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred EeEEecCce--EEEEcCCCCEEEccEEEEecCCcCCC
Confidence 999985434 45889999889999999999843333
No 44
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.59 E-value=2.8e-12 Score=124.05 Aligned_cols=254 Identities=18% Similarity=0.260 Sum_probs=134.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC----CCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~----g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (536)
..++-|||||+|+|+||.+|-+. |.+|+|||+.+..||.+....+....++-.|+..+...+..++++++.+.-.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~IPSle 81 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSIPSLE 81 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhCCCCC
Confidence 45789999999999999999986 56999999999999998765443333444566555556667888888765332
Q ss_pred cccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCC--ChhHHHHhhcccchhhhcccccccccccccHH
Q 009372 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEML--TWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (536)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (536)
.....-.+.++............+... ..... ......+ +........+ .+... -..+.+.++.
T Consensus 82 ~p~~SVlDe~~~~n~~~p~~s~~Rli~---~~G~~----~~~~~~~~Ls~k~r~eL~k----L~l~~---E~~L~~~~I~ 147 (500)
T PF06100_consen 82 DPGKSVLDEIYWFNKEDPNYSKARLID---KRGQI----VDTDSKFGLSEKDRMELIK----LLLTP---EEDLGDKRIE 147 (500)
T ss_pred CCCCcHHHHHHHhccCCCCCcceeeec---cCCcc----ccccCcCCCCHHHHHHHHH----HhcCC---HHHhCcccHH
Confidence 222111222222111111111000000 00000 0000001 1111111111 00000 0233456777
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCC----eEEEecCCCCccchHHHHHHHHHcC
Q 009372 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS----KMAFLDGNPPERLCLPIVEHIQSLG 286 (536)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~gg~~~~l~~~l~~~l~~~G 286 (536)
+|+...-+... ++ .+...+++..+- .|+..+..++.+++..-.+. ...+..-+..+.++..|.+.|+++|
T Consensus 148 d~F~~~FF~Sn----FW-~~W~T~FAFqpW-hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~G 221 (500)
T PF06100_consen 148 DWFSESFFESN----FW-YMWSTMFAFQPW-HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQG 221 (500)
T ss_pred HhcchhhhcCc----hh-HhHHHhhccCcc-hhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCC
Confidence 77655322222 22 222333344432 25555555666665433321 1122222336799999999999999
Q ss_pred cEEEeCcceEEEEEcCC--C-CEEEEEE-cCCc--EEE---cCEEEEccCHHH
Q 009372 287 GEVRLNSRVQKIELNDD--G-TVKNFLL-TNGN--VID---GDAYVFATPVDI 330 (536)
Q Consensus 287 ~~i~~~~~V~~I~~~~~--g-~~~~v~~-~~g~--~i~---ad~VI~a~~~~~ 330 (536)
|++++|+.|+.|..+.+ . .+..+++ .+|+ +|. -|.|+++.|.-+
T Consensus 222 V~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 222 VDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred CEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 99999999999997522 2 2333443 3443 332 567777776643
No 45
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.58 E-value=7.1e-14 Score=139.04 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=51.3
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~ 336 (536)
+.+++..+.+.+.++|++|+++++|++|..+++ . +.|++.+| ++.||.||+|+|.+. ..+++
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~-~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~ 209 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGD-G-VTVTTADG-TYEAKKLVVSAGAWV-KDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-e-EEEEeCCC-EEEeeEEEEecCcch-hhhcc
Confidence 678888888888889999999999999997433 3 35788777 799999999999986 45554
No 46
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.56 E-value=5.9e-15 Score=105.45 Aligned_cols=66 Identities=42% Similarity=0.766 Sum_probs=57.7
Q ss_pred EECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeecc--CcchHHHHHHHh
Q 009372 62 IAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG--AYPNIQNLFGEL 128 (536)
Q Consensus 62 IIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l 128 (536)
|||||++||+||+.|++.|++|+|+|+++.+||++.+... +++.+|.|++++.. .++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999998764 77999999999886 457788888764
No 47
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.55 E-value=3.8e-14 Score=137.21 Aligned_cols=59 Identities=31% Similarity=0.387 Sum_probs=52.3
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcE-EEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~-i~ad~VI~a~~~~~ 330 (536)
+..++..|++.++++|+++++|++|+.|+..++| +..+.+.+|++ ++|+.||.|.|.++
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhH
Confidence 6788999999999999999999999999997775 44578888866 99999999999976
No 48
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.52 E-value=3e-12 Score=127.93 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=49.3
Q ss_pred CccchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
|..++.+|.+.+.++| ..+..+++|+.+..+ . ....|.+.+|+ +.||+||+|++.+.
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 6789999999999999 567779999999874 3 55679998885 99999999999997
No 49
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.51 E-value=1.6e-13 Score=141.45 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=50.8
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc---CC--cEEEcCEEEEccCHHHHhhc
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKLQ 334 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g--~~i~ad~VI~a~~~~~l~~l 334 (536)
+..++..+...+.++|++|+++++|++|..+ ++.+++|++. +| .+|+|+.||+|+|+|. ..|
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa-~~l 214 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG-QHI 214 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhH-HHH
Confidence 6789999999999999999999999999874 5566667653 23 3799999999999997 444
No 50
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.50 E-value=9.6e-14 Score=136.14 Aligned_cols=59 Identities=29% Similarity=0.418 Sum_probs=42.3
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
...+++.|.+.+++.|++|+++++|++|+.+++ .+..|++.+++++.||+||+|+|...
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccCcccccCCEEEEecCCCC
Confidence 457888999999999999999999999998544 44568886777999999999998643
No 51
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.50 E-value=9.9e-13 Score=139.46 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=50.9
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~ 336 (536)
+..++..|.+.+.+ |++++++++|++|..+++ .+ .|.+.+|..+.||.||+|+|.+. ..+.+
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~-~~-~v~t~~g~~~~ad~VV~A~G~~s-~~l~~ 468 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDD-GW-QLDFAGGTLASAPVVVLANGHDA-ARFAQ 468 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC-EE-EEEECCCcEEECCEEEECCCCCc-ccccc
Confidence 67899999999988 999999999999987443 34 37788886678999999999987 44443
No 52
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.47 E-value=3.3e-13 Score=133.54 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=48.7
Q ss_pred CccchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCC
Q 009372 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~ 337 (536)
+..++..|.+.+.++ |++|+++++|++|+. + .|++.+| +++||+||+|+|++. ..|++.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s-~~l~~~ 203 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF-ETLFPE 203 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh-hhhCcc
Confidence 678889999988775 999999999999964 2 3778777 589999999999987 556543
No 53
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.45 E-value=2e-11 Score=127.46 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=50.1
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcC-CCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~-~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
+..++..|.+.+.++|++|+.+++|++|..++ ++.+++|++ .+|+ ++.||.||+|+|+|.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 77999999999999999999999999998754 466666664 2343 589999999999996
No 54
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.44 E-value=7.9e-12 Score=125.47 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.|-..|.+.+++.|++|+++++|++|..+ ++.++.+. .+|++++||.||.|+|.+.
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCCH
Confidence 34455777788889999999999999874 45554454 4566899999999998753
No 55
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.44 E-value=2.9e-13 Score=134.95 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=48.6
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
+..+++.|.+.++++|++++++++|++|..++++ + .|.+.+| ++.||.||+|+|.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-V-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-E-EEEECCC-EEEeCEEEECCCcch
Confidence 5788999999999999999999999999874333 3 5777777 799999999999875
No 56
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.42 E-value=8.6e-11 Score=117.01 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=48.1
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCC
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
.+.+.|++.+++.|++++.++.|+.+..++++.+.+ +..++.+++|+.||.|.|+. .+.+.+.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~a~~vI~AdG~~s~l~~~lg 159 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVG-VRAGDDEVRAKVVIDADGVNSALARKLG 159 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEE-EEcCCEEEEcCEEEECCCcchHHHHHhC
Confidence 556678889999999999999999999876665543 33344689999999999874 4444443
No 57
>PRK10015 oxidoreductase; Provisional
Probab=99.41 E-value=1.3e-10 Score=116.49 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~ 329 (536)
.|-..|.+.+++.|++++.+++|+.|..+ ++.+..+.+ ++++++||.||.|.|..
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 34445777788889999999999999874 455555554 44579999999999874
No 58
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.41 E-value=8.2e-11 Score=120.53 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=47.0
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC---Cc--EEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~---g~--~i~ad~VI~a~~~~~ 330 (536)
+.+++..+...+.++|++++++++|++|..+ ++. ++|++.+ |+ +++|+.||+|+|+|.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 5788888988999999999999999999874 332 3465543 43 799999999999987
No 59
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.41 E-value=5.5e-12 Score=127.07 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=50.1
Q ss_pred CccchHHHHHHHHH----cC--cEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHH
Q 009372 271 PERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (536)
Q Consensus 271 ~~~l~~~l~~~l~~----~G--~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l 331 (536)
+..++..|.+.+++ +| ++|+++++|++|..+++ ..+.|++.+| +++||.||+|+|.|+.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-SLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-CeEEEEECCC-EEEeCEEEECcChhHH
Confidence 67899999999998 77 78999999999997533 3456888888 7999999999999873
No 60
>PRK07045 putative monooxygenase; Reviewed
Probab=99.40 E-value=7.2e-11 Score=117.80 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=48.0
Q ss_pred cchHHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhc
Q 009372 273 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQ 334 (536)
Q Consensus 273 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~l 334 (536)
.|.+.|.+.+.+ .|++++++++|++|+.++++.++.|++.+|+++.+|.||.|.|.. .+++.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 344556666644 479999999999999866666566888899899999999999885 45553
No 61
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.39 E-value=9.5e-11 Score=117.09 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=48.6
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH-HhhcC
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~-l~~ll 335 (536)
..+.+.|.+.+.+.|++++++++|++|..++++ + .|++.+|++++||.||.|.|.+. +++.+
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~~ 175 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDDGRRLEAALAIAADGAASTLRELA 175 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECCCCEEEeCEEEEecCCCchHHHhh
Confidence 356677888888889999999999999875443 3 47778888899999999998853 34433
No 62
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.39 E-value=5.1e-11 Score=122.22 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=48.8
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC----cEEEcCEEEEccCHHHHhhc
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDILKLQ 334 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g----~~i~ad~VI~a~~~~~l~~l 334 (536)
+..++..+...+.++|++++.+++|++|..+ ++ .+.|++.++ .++.|+.||.|+|+|+ ..+
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa-~~l 218 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWV-TDV 218 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccH-HHH
Confidence 5788888999999999999999999999874 33 234666554 2599999999999987 444
No 63
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.38 E-value=7.3e-11 Score=115.51 Aligned_cols=251 Identities=18% Similarity=0.254 Sum_probs=146.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeec--------------------cCCCCeeeeceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK--------------------DGDGDWYETGLHIF 114 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~--------------------~~~g~~~d~G~~~~ 114 (536)
+.++||||+|.|+.....|..|++.|.+|+.+|+++.-||...+.. ....+.+|+-+..+
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 5789999999999999999999999999999999999999988855 01236677777777
Q ss_pred ccCcchHHHHHHHhCCCCcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhh
Q 009372 115 FGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAI 194 (536)
Q Consensus 115 ~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (536)
... ..+.+++-+-++...+++...+..+... .+++.. +|..... ++. ...+...++.+..+.+ ...
T Consensus 82 ~a~-g~LV~lLi~S~V~rYLEFk~V~~~~v~~--~~~l~k------VP~sr~d---vf~-s~~lsl~eKR~lmkFl-~~v 147 (438)
T PF00996_consen 82 YAR-GPLVKLLISSGVTRYLEFKAVDGSYVYK--NGKLHK------VPCSRED---VFK-SKLLSLFEKRRLMKFL-KFV 147 (438)
T ss_dssp ETT-SHHHHHHHHCTGGGGSEEEEESEEEEEE--TTEEEE--------SSHHH---HHC--TTS-HHHHHHHHHHH-HHH
T ss_pred hcc-CHHHHHHHhCCcccceEEEEcceeEEEe--CCEEee------CCCCHHH---hhc-CCCccHHHHHHHHHHH-HHH
Confidence 643 3466777777887776666655443322 122211 2322222 222 2344454443332221 111
Q ss_pred hcc---cc-cc--cccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCc--cccHHHHHHHHHHHhh--hcCC-CeE
Q 009372 195 IGG---QA-YV--EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD--ELSMQCILIALNRFLQ--EKHG-SKM 263 (536)
Q Consensus 195 ~~~---~~-~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~g-~~~ 263 (536)
... .+ .. ......++.++++++++++...+.+...+... .+.. +-++...+..+..++. +.+| +..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~---~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPf 224 (438)
T PF00996_consen 148 ANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALS---LDDSYLTEPAREGLERIKLYLSSLGRYGKSPF 224 (438)
T ss_dssp HHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-S---SSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSE
T ss_pred hhcccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhc---cCcccccccHHHHHHHHHHHHHHHhccCCCCE
Confidence 111 11 11 12346889999999998876655443322211 1111 1133444555555442 2333 345
Q ss_pred EEecCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEE
Q 009372 264 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVF 324 (536)
Q Consensus 264 ~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~ 324 (536)
-|+..| .++|.+++.+...-.|+...+|++|.+|..+++|++.+|.. +|++++|++||.
T Consensus 225 LyP~YG-~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~ 283 (438)
T PF00996_consen 225 LYPLYG-LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG 283 (438)
T ss_dssp EEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE
T ss_pred EEEccC-CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE
Confidence 555555 67999999999999999999999999999877888888875 888999999995
No 64
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.37 E-value=8.7e-12 Score=106.27 Aligned_cols=42 Identities=43% Similarity=0.602 Sum_probs=38.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
.+.||+|||||+|||+|||+|+++|.+|+|+|++-.+||-+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 456999999999999999999999999999999999988764
No 65
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.37 E-value=2.5e-10 Score=115.12 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=34.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
+.++||+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 45789999999999999999999999999999998754
No 66
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.36 E-value=3.3e-10 Score=113.72 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=49.4
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCCC
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPE 337 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~~ 337 (536)
.+.+.|.+.+.+.|++++++++|++|+.++++ + .|++.+|++++||.||.|.|.+ .+++++..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 45567777777789999999999999875554 3 4778888889999999999885 45566543
No 67
>PRK07121 hypothetical protein; Validated
Probab=99.36 E-value=4.2e-11 Score=122.85 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC-Cc--EEEc-CEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~-g~--~i~a-d~VI~a~~~~~ 330 (536)
...++..|.+.+++.|++|+++++|++|..++++++++|+..+ |+ +++| +.||+|+|.+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3468889999999999999999999999886567888887643 32 5789 99999998654
No 68
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.34 E-value=2.9e-10 Score=113.64 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcC
Q 009372 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll 335 (536)
..+.+.|.+.+.+.| ++++++++|++|+.++++ + .|++.+|+++.+|.||.|.|.+ .+++.+
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~~~~vi~adG~~S~vr~~l 169 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDH-V-ELTLDDGQQLRARLLVGADGANSKVRQLA 169 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-e-EEEECCCCEEEeeEEEEeCCCCCHHHHHc
Confidence 356777888888887 999999999999875443 3 4778889889999999999875 334444
No 69
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.33 E-value=8.4e-11 Score=116.51 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=55.3
Q ss_pred EEEecCC-CCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCc-----EEEcCEEEEccCHHHHhhcC
Q 009372 263 MAFLDGN-PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 263 ~~~~~gg-~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~-----~i~ad~VI~a~~~~~l~~ll 335 (536)
..|.++- ...+|+-.++..+.++|.++.+.++|+++..+ ++ +++|.+.|.+ +++|+.||.|+|+|+ .+++
T Consensus 154 ~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~ 229 (532)
T COG0578 154 FRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWV-DEIL 229 (532)
T ss_pred EEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHH
Confidence 3444432 25688999999999999999999999999984 44 7788876543 589999999999998 5544
No 70
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.32 E-value=2.1e-11 Score=112.66 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC-----------CcEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~-----------g~~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+.+.|++|++++.|++|..++++++.+|.+.. ..+++|+.||.|+|.+.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 466777888888899999999999999875555676666431 24799999999998653
No 71
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.31 E-value=1.1e-09 Score=109.12 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH-HhhcCC
Q 009372 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 336 (536)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~-l~~ll~ 336 (536)
..+.+.|.+.+.+ .|++++++++|++|..++++ +.|++.+|+++.||.||.|.|.+. +++.+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 4677788888887 49999999999999875544 347778888899999999999853 455543
No 72
>PRK06184 hypothetical protein; Provisional
Probab=99.31 E-value=2.3e-10 Score=117.83 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=45.9
Q ss_pred chHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCcEEEcCEEEEccCHHH-HhhcCC
Q 009372 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI-LKLQLP 336 (536)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~~i~ad~VI~a~~~~~-l~~ll~ 336 (536)
+-..|.+.+.+.|++|+++++|++|+.++++. .+++ .++++++||.||.|.|.+. +++.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 44567777888899999999999999865553 2444 4556899999999998853 455554
No 73
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.31 E-value=7.7e-10 Score=109.98 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=50.4
Q ss_pred ccchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEEc-CCcEEEcCEEEEccCHH-HHhhcCC
Q 009372 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~~-~g~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
..+.+.|.+.+.+.+ +++++++.|+.++.++++ +. +++. +|++++||.||-|-|.+ .+++.++
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 466777888888776 899999999999986544 43 7777 99899999999999874 5566665
No 74
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.31 E-value=1.3e-10 Score=116.71 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=49.0
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcC
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll 335 (536)
..+.+.|.+.+.+.|++++++++|++|+.++++ +.|++.+|+++.||.||.|.|.+ .+++.+
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLVAADGARSKLRELA 173 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEEcCCCChHHHHHc
Confidence 467778888888889999999999999875443 34778888889999999999874 344444
No 75
>PRK06847 hypothetical protein; Provisional
Probab=99.31 E-value=2.4e-10 Score=113.58 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+.+.|.+.+.+.|++|+++++|++|..++++ +.|++.+|+++.+|.||.|+|.+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCCCc
Confidence 45666778888889999999999999875443 357788898999999999999853
No 76
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.31 E-value=4.3e-11 Score=110.22 Aligned_cols=41 Identities=41% Similarity=0.582 Sum_probs=38.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCcee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~ 96 (536)
.++||+|||||++||+||+.|++.|.+|+|+|++..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 57899999999999999999999999999999999888754
No 77
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=2.3e-11 Score=109.73 Aligned_cols=241 Identities=21% Similarity=0.263 Sum_probs=132.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccC-CC-CeeeeceeeeccCcchHHHHHHHhCCCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG-DWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~-~g-~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 134 (536)
++|++|||||++|+..|..|++.|.+|+|+|+++.+||.|.+..+. .| .+.-.|+|+|+.....+++.+..+---...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~~~Y 80 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEFNPY 80 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhhhhh
Confidence 4799999999999999999999999999999999999999886543 45 345679999998888888888776321111
Q ss_pred cccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhcccccccccccccHHHHHH
Q 009372 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (536)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (536)
.... ..+. ++.. -.+|-.+..+..++...-. ++.++........ .....+..++++-.-
T Consensus 81 ---~hrV-la~~--ng~~------~~lP~nl~ti~ql~G~~~~---p~~a~~~i~~~~~------~~~~~~~q~~ee~ai 139 (374)
T COG0562 81 ---QHRV-LALV--NGQL------YPLPFNLNTINQLFGKNFT---PDEARKFIEEQAA------EIDIAEPQNLEEQAI 139 (374)
T ss_pred ---ccce-eEEE--CCee------eeccccHHHHHHHhCccCC---HHHHHHHHHHhhc------cccccchhhhhhHHH
Confidence 1110 1110 0110 0144445555544432111 1111111100000 000111223333322
Q ss_pred HcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHh-hhcCCCeEEEecCCCCccchHHHHHHHHHcCcEEEeCc
Q 009372 215 KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL-QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNS 293 (536)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~ 293 (536)
+. +...+...++.......|+++++++++......-..+. ...+-.. . ..|-+-......+.+.|...+.++++||
T Consensus 140 s~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d-~-yQGlP~~GYT~~~~kMl~hp~I~V~Lnt 216 (374)
T COG0562 140 SL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSD-T-YQGLPKDGYTAMFEKMLDHPNIDVRLNT 216 (374)
T ss_pred HH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCc-c-cccCccccHHHHHHHHhcCCCceEEecC
Confidence 22 34456666777777788999999998865432111100 0111111 1 1111112334444444444568999998
Q ss_pred ceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009372 294 RVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (536)
Q Consensus 294 ~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ 333 (536)
.-..+.... ++ +.+..||.|.+...+-.
T Consensus 217 d~~~~~~~~----------~~--~~~~~VvytG~iD~~Fd 244 (374)
T COG0562 217 DFFDVKDQL----------RA--IPFAPVVYTGPIDAYFD 244 (374)
T ss_pred cHHHHhhhh----------cc--cCCCceEEecchHhhhc
Confidence 776665311 11 44558999888876444
No 78
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.30 E-value=1.8e-09 Score=107.71 Aligned_cols=61 Identities=31% Similarity=0.442 Sum_probs=46.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc--CceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~--GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (536)
++||+|||||++||++|..|++.|++|+|+|++... .+. .++..+ .++..++++++|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-------------~~a~~l---~~~~~~~l~~lGl~~~ 64 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGR-------------IRAGVL---EQGTVDLLREAGVGER 64 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccc-------------cceeEE---CHhHHHHHHHcCChHH
Confidence 469999999999999999999999999999998742 111 112222 3456688899998654
No 79
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.30 E-value=1.3e-10 Score=119.24 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc--CC--cEEEcCEEEEccCHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 329 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~--~g--~~i~ad~VI~a~~~~ 329 (536)
..++..|.+.+++.|++|+++++|++|.. +++++++|... +| .++.|+.||+|+|.+
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 35788899999999999999999999986 46777666653 33 268999999999754
No 80
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.30 E-value=1.2e-10 Score=116.33 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcC
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll 335 (536)
..+.+.|.+.+.+.+...++++.|++|+.++++ + .|++.+|++++||.||.|.|.+ .+++.+
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGADGRNSPVREAA 173 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEecCCCchhHHhc
Confidence 456777888887775444889999999875444 3 4778888889999999999885 344444
No 81
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.30 E-value=1.3e-09 Score=108.87 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH-HhhcCC
Q 009372 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 336 (536)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~-l~~ll~ 336 (536)
.+.+.|.+.+.+. |++++++++|+++..++++ +.|++.+|++++||.||.|.|.+. +++.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4455677777666 8999999999999875444 347778888899999999998853 445443
No 82
>PRK07190 hypothetical protein; Provisional
Probab=99.29 E-value=1.2e-09 Score=111.21 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCC
Q 009372 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 276 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
..|.+.+.+.|++++++++|++|+.++++. .+++.+|++++|+.||.|.|.. .+++.+.
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 345667778899999999999999865553 3566778889999999999884 4555554
No 83
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.28 E-value=1.7e-11 Score=120.52 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=52.6
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
|..++++|+..+.+.|+.|..|++|++|....+ +..+|.|.-| .|++.+||.|+|.|+
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHVETD-KFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-CccceeccCc-ceecceEEechhHHH
Confidence 789999999999999999999999999997444 4458999999 699999999999997
No 84
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.28 E-value=7.5e-12 Score=126.61 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=47.4
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCC--cEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g--~~i~ad~VI~a~~~~~ 330 (536)
+..++..|.+.+.++|++|+++++|++|..++++.+ .|++ .+| .+++||+||+|+|.+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 778999999999999999999999999997544433 2432 234 2699999999999986
No 85
>PRK06834 hypothetical protein; Provisional
Probab=99.28 E-value=2.2e-10 Score=116.68 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=46.4
Q ss_pred chHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH-HhhcC
Q 009372 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (536)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~-l~~ll 335 (536)
+-+.|.+.+++.|++|+++++|++|..++++ +.|++.+|++++||.||.|.|.+. +++.+
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 4455777777889999999999999985554 346777787899999999998853 44444
No 86
>PRK06185 hypothetical protein; Provisional
Probab=99.28 E-value=9.4e-10 Score=110.62 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEE--EcCCc-EEEcCEEEEccCHH-HHhhcCC
Q 009372 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL--LTNGN-VIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~--~~~g~-~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
.+.+.|.+.+.+. |+++++++.|+++..+ ++.+++|+ +.+|+ +++||.||.|.|.+ .+++.+.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4555667766654 7999999999999875 44444444 34564 79999999999885 3455553
No 87
>PRK09126 hypothetical protein; Provisional
Probab=99.28 E-value=4.3e-10 Score=112.55 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=43.4
Q ss_pred hHHHHHHHH-HcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcC
Q 009372 275 CLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (536)
Q Consensus 275 ~~~l~~~l~-~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll 335 (536)
.+.|.+.+. ..|++|+++++|++++.++++ +.|++++|++++||.||.|.|.. .+++.+
T Consensus 113 ~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 113 RRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 344555554 358999999999999875443 34777888899999999999884 344444
No 88
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.27 E-value=1.7e-11 Score=124.13 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
+..+++.|.+.+++.| ++|+++++|++|..++++.+ .|++ .+|+ ++.|++||+|+|.+.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 6789999999999887 79999999999998656533 2443 3353 699999999999987
No 89
>PLN02463 lycopene beta cyclase
Probab=99.26 E-value=1.6e-09 Score=108.26 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..+.+.|.+.+.+.|++++ ++.|++|+.++++ ..|++.+|++++||.||.|+|...
T Consensus 114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCc
Confidence 3455667777778899986 6789999975443 358888998899999999999853
No 90
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.26 E-value=3.4e-09 Score=110.06 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=48.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCc
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (536)
..++||+|||||++||++|..|++.|++|+|+|++...+...+.. ...+...++++++|+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~----------------~l~~~~~~~L~~lGl~~~ 70 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAV----------------GIDDEALRVLQAIGLADE 70 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcee----------------eeCHHHHHHHHHcCChhH
Confidence 467899999999999999999999999999999987643221110 123456778888887654
No 91
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.26 E-value=1.5e-09 Score=108.10 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=44.9
Q ss_pred chHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcC
Q 009372 274 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (536)
Q Consensus 274 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll 335 (536)
+-..|.+.+.+. |+++++++.|++++.++++ + .|++.+|++++||.||.|.|.+ .+++.+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 334455655543 6899999999999986554 3 4888899899999999999885 444544
No 92
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.26 E-value=2.5e-09 Score=106.85 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcC
Q 009372 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll 335 (536)
..+.+.|.+.+.+.| ++++ ++.|++|..++++ +.|++.+|+++.||.||.|.|.+ .+++.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 356677888888887 8898 9999999864444 34788888789999999999985 344444
No 93
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.25 E-value=3.5e-11 Score=103.56 Aligned_cols=42 Identities=43% Similarity=0.558 Sum_probs=35.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
.++||+|||||++||+||+.|++.|++|+|+|++..+||.+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 468999999999999999999999999999999999888764
No 94
>PRK07588 hypothetical protein; Provisional
Probab=99.25 E-value=7.2e-10 Score=110.74 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=42.6
Q ss_pred chHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhc
Q 009372 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQ 334 (536)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~l 334 (536)
|.+.|.+.+. .|++|++++.|++|+.++++ + .|++.+|+++++|.||.|.|.+ .+++.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCCccchhh
Confidence 3444555443 37999999999999975444 3 4788899889999999999875 33443
No 95
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.25 E-value=6.1e-09 Score=99.89 Aligned_cols=62 Identities=21% Similarity=0.316 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc-CCcEEEcCEEEEccCHHH-HhhcC
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVDI-LKLQL 335 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~-~g~~i~ad~VI~a~~~~~-l~~ll 335 (536)
..+.+.|.+.+.+.|+++++++.|+++..++++ + .+.+. ++.+++||.||.|+|.+. +++.+
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~ 154 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSRSIVAKKL 154 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcchHHHHhc
Confidence 356677888888889999999999999875444 2 24333 345899999999999853 44433
No 96
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.25 E-value=6.3e-11 Score=120.11 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc--CCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~--~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+++.|++|+++++|++|..++++++++|... +++ .+.++.||+|+|.+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 46888999999999999999999999998666777776653 343 478999999998754
No 97
>PRK08013 oxidoreductase; Provisional
Probab=99.25 E-value=3.9e-09 Score=105.60 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCC
Q 009372 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
.|-..|.+.+.+. |+++++++.|++|+.++++ +.|++.+|++++||.||-|-|.+ .+++.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 4556677777665 7999999999999875544 34777889899999999999874 4555553
No 98
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.25 E-value=1.9e-10 Score=117.48 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=47.3
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc--CC--cEEEcCEEEEccCHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 329 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~--~g--~~i~ad~VI~a~~~~ 329 (536)
...++..|.+.+++.|++|+++++|++|.. +++++++|++. +| ..+.|+.||+|+|..
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 357888899999999999999999999987 46777777763 23 368999999999753
No 99
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.25 E-value=2.3e-09 Score=107.58 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=45.0
Q ss_pred hHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCC
Q 009372 275 CLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 275 ~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
...|.+.+.+. |++++++++|++|..++++ +.|++.+|++++||.||.|.|.+ .+++.+.
T Consensus 114 ~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 114 QLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 34566666553 6999999999999875444 35788889899999999999874 4455543
No 100
>PRK08244 hypothetical protein; Provisional
Probab=99.24 E-value=2.2e-09 Score=110.47 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=44.1
Q ss_pred chHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC-cEEEcCEEEEccCHH-HHhhcCC
Q 009372 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g-~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
+-+.|.+.+.+.|++++++++|++|..++++..+.+...+| ++++||.||.|.|.+ .+++.+.
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 34456666777899999999999998755553222333345 479999999999875 4455553
No 101
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.24 E-value=1.8e-08 Score=101.42 Aligned_cols=36 Identities=33% Similarity=0.558 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..++||+|||||++|++||+.|++.|++|+|+|++.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 456899999999999999999999999999999874
No 102
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.23 E-value=8.9e-09 Score=107.28 Aligned_cols=63 Identities=30% Similarity=0.422 Sum_probs=48.6
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccC--ceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCC
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG--GKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGI 130 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~G--G~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~ 130 (536)
..+.++||+|||||++||++|+.|++.|++|+|+|++.... ++... ..+...++++++|+
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~------------------l~~~~~~~l~~lGl 80 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAIC------------------FAKRSLEIFDRLGC 80 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEE------------------EcHHHHHHHHHcCC
Confidence 34567899999999999999999999999999999987542 22211 13456788899988
Q ss_pred CCc
Q 009372 131 NDR 133 (536)
Q Consensus 131 ~~~ 133 (536)
...
T Consensus 81 ~~~ 83 (547)
T PRK08132 81 GER 83 (547)
T ss_pred cHH
Confidence 654
No 103
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.22 E-value=1.3e-10 Score=116.78 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=45.7
Q ss_pred CccchHHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEE---EcCCc--EEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~---~~~g~--~i~ad~VI~a~~~~~ 330 (536)
+..+.+.|.+.+.+ .|++|+++++|++|..++++.+ .++ +.+|+ +++||.||+|+|.|.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence 56788999999865 4899999999999987534433 243 34452 699999999999987
No 104
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.22 E-value=7.4e-10 Score=109.35 Aligned_cols=64 Identities=28% Similarity=0.338 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc-CC--cEEEcCEEEEccCHH-HHhhcCC
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NG--NVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~-~g--~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
.+-+.|.+.+++.|++|++++.|+++..+.++....+... +| ++++||.||-|-|.+ .+++.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 4556688888888999999999999998655533223322 23 278999999999885 4555554
No 105
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.20 E-value=9.3e-10 Score=113.61 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc-CCc--EEEc-CEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~-~g~--~i~a-d~VI~a~~~~~ 330 (536)
..|+..|.+.+++.|++|+++++|++|.. ++|++++|... +|+ .+.+ +.||+|||...
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 57889999999999999999999999986 46888888654 343 3556 47999997654
No 106
>PLN02697 lycopene epsilon cyclase
Probab=99.20 E-value=2.7e-08 Score=101.11 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.|.+.|.+.+.+.|+++ +++.|++|..++++ +..+++.+|+++.|+.||.|+|.+.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 45667788888889998 78899999875444 3335567788899999999999987
No 107
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.19 E-value=1.3e-08 Score=102.07 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=40.7
Q ss_pred HHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 276 LPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 276 ~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
+.|.+.+.+ .|++++++++|++|..++++ + .|++.+|.++.+|.||.|.|.+.
T Consensus 116 ~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 116 QRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCh
Confidence 445555555 47999999999999874444 3 47788888899999999998753
No 108
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.17 E-value=1.5e-08 Score=102.44 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHcC---cEEEeCcceEEEEEc-----CCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCC
Q 009372 273 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----DDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 273 ~l~~~l~~~l~~~G---~~i~~~~~V~~I~~~-----~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
.+...|.+.+.+.+ ++++++++|++|+.+ +++..+.|++.+|++++||.||-|-|.+ .+++.+.
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 34556677776654 899999999999752 2223346888899999999999999885 4455553
No 109
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.16 E-value=6.5e-10 Score=112.14 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.++++|++|+++++|++|.. +++++++|... +|+ +|+|+.||+||+...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 56889999999999999999999999999 47788888876 454 578999999997754
No 110
>PRK06126 hypothetical protein; Provisional
Probab=99.16 E-value=1.9e-09 Score=112.31 Aligned_cols=63 Identities=27% Similarity=0.345 Sum_probs=46.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCc
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (536)
+.++||+|||||++||++|..|++.|++|+|+|++....-. + .+. ...+...++++++|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~--------~-----ra~---~l~~r~~e~L~~lGl~~~ 67 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN--------P-----KAN---TTSARSMEHFRRLGIADE 67 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC--------C-----ccc---cCCHHHHHHHHhcChHHH
Confidence 45689999999999999999999999999999987532100 0 000 123456678888887654
No 111
>PRK11445 putative oxidoreductase; Provisional
Probab=99.15 E-value=1.2e-08 Score=100.17 Aligned_cols=60 Identities=28% Similarity=0.376 Sum_probs=44.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccC--ceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG--GKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~G--G~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 131 (536)
++||+|||||++|+++|+.|++. ++|+|+|+++..+ |.... -|. ...++..++++++|+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~----------~g~----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKP----------CGG----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCc----------CcC----ccCHHHHHHHHHcCCC
Confidence 47999999999999999999999 9999999987542 11100 111 1234567888888875
No 112
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.15 E-value=2.2e-08 Score=99.28 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCC
Q 009372 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
..|...|.+.+.+.+ +++++++.|++|..++++ + .|++.++ +++||.||.|-|.+ .+++.+.
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCCchhHHhcC
Confidence 356667777777765 899999999999875544 3 4777776 89999999999885 4455553
No 113
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.14 E-value=7.1e-10 Score=114.30 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHc-CcEEEeCcceEEEEEcC-CCCEEEEEEc-CCc--EEEcCEEEEccCHH
Q 009372 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPVD 329 (536)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~-~g~~~~v~~~-~g~--~i~ad~VI~a~~~~ 329 (536)
..++..|.+.+.++ |++|++++.|+++..++ +|++++|... +|+ .+.|+.||+|||..
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 46888888888764 89999999999998753 3778787654 443 37899999999874
No 114
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.14 E-value=7.7e-10 Score=111.03 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEE-EcCCc--EEEcCEEEEccCHH
Q 009372 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYVFATPVD 329 (536)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~-~~~g~--~i~ad~VI~a~~~~ 329 (536)
..++..|.+.+.+ .|++|+++++|++|..+ ++++++|. ..+|+ ++.|+.||+|||..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4678888888875 48999999999999874 56666754 33454 58999999999874
No 115
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.14 E-value=2.6e-08 Score=99.22 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
+||+|||||+||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 116
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.13 E-value=2.6e-09 Score=111.00 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC-Cc--EEEcC-EEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGD-AYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~-g~--~i~ad-~VI~a~~~~~ 330 (536)
..++..|.+.+++.|++|+++++|++|..+++|++++|...+ |+ .+.|+ .||+|++...
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 457777888888889999999999999987678888887643 33 57787 5999997654
No 117
>PRK12839 hypothetical protein; Provisional
Probab=99.13 E-value=3e-09 Score=110.16 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc--CCc-EEE-cCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VID-GDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~--~g~-~i~-ad~VI~a~~~~~ 330 (536)
...|+..|.+.+.+.|++|+++++|++|..++++++++|... +|+ .+. ++.||+|++.+.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 357888999999999999999999999987557888888653 343 344 589999997754
No 118
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.13 E-value=4.1e-10 Score=111.93 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=45.5
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
...+.+.|.+.+++.|++++++++|++|..+ ++. ..|++ +++++.+|.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCCCcc
Confidence 3567888899999999999999999999864 332 34666 455899999999999744
No 119
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.12 E-value=2.1e-09 Score=111.99 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=47.8
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc--CCc-EEEc-CEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~--~g~-~i~a-d~VI~a~~~~~ 330 (536)
...|+..|.+.+++.|++|+++++|++|..+ ++++++|... ++. +++| +.||+|++.+.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 3568899999999999999999999999874 6777777653 332 5788 89999998875
No 120
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.12 E-value=3.9e-08 Score=97.92 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=33.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~G 93 (536)
+||+|||||++|++||+.|++.|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 599999999999999999999999999999976543
No 121
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.12 E-value=2.7e-08 Score=104.44 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=47.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC-CCceEEEecCCcc--CceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCC
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGI 130 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~-g~~V~vlE~~~~~--GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~ 130 (536)
.++++||+|||||++||++|..|++. |++|+|+|+++.. .|+.- +..+...++++++|+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~------------------gl~prtleiL~~lGl 90 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD------------------GIACRTMEMFQAFGF 90 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee------------------EEChHHHHHHHhccc
Confidence 35678999999999999999999995 9999999987532 12111 124567788999988
Q ss_pred CCc
Q 009372 131 NDR 133 (536)
Q Consensus 131 ~~~ 133 (536)
...
T Consensus 91 ~d~ 93 (634)
T PRK08294 91 AER 93 (634)
T ss_pred hHH
Confidence 654
No 122
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.12 E-value=5.1e-08 Score=97.41 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..+.+.|.+.+.+.|++++ ++.|+.+..++++ ...|++.+|++++|+.||.|+|.+.
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 3556667777878888885 6689999874233 3457788887899999999999875
No 123
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.12 E-value=1.8e-10 Score=103.86 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=35.5
Q ss_pred HHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH
Q 009372 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (536)
Q Consensus 278 l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~ 329 (536)
|.+.+++.++++++++.|++|..++++ ..|++.++++++||+||+|||..
T Consensus 88 l~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 88 LQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeecc
Confidence 455556667889999999999997666 34888888889999999999964
No 124
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.11 E-value=8.7e-10 Score=115.21 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=48.4
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+++.|++|++++.|+++..+++|++.+|.. .+|+ .+.|+.||+|||...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 4788899999988999999999999998755778888764 3453 678999999997753
No 125
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.11 E-value=1e-08 Score=93.37 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=33.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHC----CCceEEEecCCc
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDV 91 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~----g~~V~vlE~~~~ 91 (536)
+..+||+|||||..|+++|++|.++ |++|+|+|+++.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 4589999999999999999999874 799999999875
No 126
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.11 E-value=2e-09 Score=111.12 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc-------CC-cEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~-------~g-~~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+++.|+++++++.|++|..++++++++|... ++ ..+.|+.||+|+|...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 46888899998888999999999999987555677777653 22 3689999999998854
No 127
>PLN02661 Putative thiazole synthesis
Probab=99.11 E-value=2.2e-09 Score=101.49 Aligned_cols=44 Identities=36% Similarity=0.368 Sum_probs=38.5
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHC-CCceEEEecCCccCcee
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKI 96 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~-g~~V~vlE~~~~~GG~~ 96 (536)
....++||+|||||++|++||++|++. |++|+|+|+...+||..
T Consensus 88 ~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 88 ITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred hhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 345578999999999999999999986 89999999998887744
No 128
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=8.8e-10 Score=115.00 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=48.7
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+.|++|++++.|++|..+++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688889998988999999999999998755578888874 3554 688999999998764
No 129
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=1.7e-09 Score=113.44 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009372 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 276 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g~--~i~ad~VI~a~~~~~ 330 (536)
+.|.+.+++.|++|++++.|++|..+ ++++++|... +|+ .+.|+.||+|||...
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 55666777889999999999999874 6778888764 353 588999999998754
No 130
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=7e-10 Score=115.35 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=48.7
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..|+..|.+.+.+.|++|++++.|+++..+++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 4688889888888899999999999999755788888875 2553 578999999998764
No 131
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.10 E-value=4.1e-10 Score=112.84 Aligned_cols=56 Identities=29% Similarity=0.362 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+.+.|.+.+.+.+ ++++++++|++|..++++ + .|++.+|+++.||.||.|.|.+.
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEECCCcCh
Confidence 45666777777664 899999999999874443 3 47788888899999999998864
No 132
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=1.4e-09 Score=112.88 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC---Cc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~---g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+.|++|++++.|+++..+ +|++++|...+ |+ .+.|+.||+|||...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 467888888888889999999999999984 68888887643 32 578999999998764
No 133
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.09 E-value=1.6e-09 Score=113.16 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+.+.|++|++++.|++|..+ +|++++|.. .+|+ .+.|+.||+|||...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 467788888888889999999999999874 677777654 3554 589999999998764
No 134
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.09 E-value=4.4e-09 Score=108.93 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc-CCc--EEEcC-EEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~-~g~--~i~ad-~VI~a~~~~~ 330 (536)
..++..|.+.+++.|++|+++++|++|..+ ++++++|... +|+ .+.|+ .||+||+...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 468888999999999999999999999974 6788888764 343 47785 6999997654
No 135
>PRK06996 hypothetical protein; Provisional
Probab=99.08 E-value=5.7e-08 Score=97.13 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=46.9
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC---cEEEcCEEEEccCH--HHHhhcCC
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV--DILKLQLP 336 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g---~~i~ad~VI~a~~~--~~l~~ll~ 336 (536)
.+-+.|.+.+.+.|+++++++.|++|+.++++. .+++.+| ++++||.||-|.|. ...++.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 566778888888899999999999998755552 3666644 58999999999884 44455543
No 136
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.08 E-value=1.4e-09 Score=113.58 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=48.2
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+.|++|+.++.+++|..++++++++|... +|+ .+.|+.||+|||...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 46888999988888999999999999887556788887652 453 678999999998754
No 137
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=2.2e-09 Score=111.86 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g~--~i~ad~VI~a~~~~~ 330 (536)
..|+..|.+.+.+.|+++++++.|+++..+++|++.+|... +|+ .+.|+.||+|||...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 46888898888888999999999999987556778887652 453 578999999998754
No 138
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.07 E-value=1.4e-09 Score=109.37 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=40.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
...++|+|||||++||+||++|++.|++|+|+|+++.+||.+.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34679999999999999999999999999999999999998754
No 139
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.07 E-value=3.5e-09 Score=109.78 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=40.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
..++||+|||+|++|++||..+++.|.+|+|||+....||.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccc
Confidence 35789999999999999999999999999999999988887654
No 140
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=3.6e-09 Score=109.63 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+++.|++|++++.|+++..++++++++|.. .+|+ .+.|+.||+|||...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4677888888888899999999999998754444777653 3554 588999999998754
No 141
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.06 E-value=1.2e-09 Score=110.77 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+...|.+.+.+. |+++ +++.|++|.. +++++.+|.+.+|..+.|+.||+|+|.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4455666777655 7888 4667999987 46678889999999999999999999865
No 142
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.06 E-value=4.3e-09 Score=107.66 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEEEcC-C--cEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~~~~-g--~~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+++ .|++|++++.|++|..+ ++.+++|.+.+ + ..+.|+.||+|+|.+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688889988887 58999999999999874 56676666554 3 3689999999998875
No 143
>PLN02985 squalene monooxygenase
Probab=99.06 E-value=5.4e-08 Score=99.59 Aligned_cols=65 Identities=26% Similarity=0.370 Sum_probs=47.6
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCC
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (536)
..+..+||+|||||++|+++|+.|++.|++|+|+|+......+. .| . ...++-.+.++++|+.+
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~------------~g-~---~L~p~g~~~L~~LGl~d 102 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM------------MG-E---FMQPGGRFMLSKLGLED 102 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc------------cc-c---ccCchHHHHHHHcCCcc
Confidence 45678899999999999999999999999999999974321111 01 1 12344567888888865
Q ss_pred c
Q 009372 133 R 133 (536)
Q Consensus 133 ~ 133 (536)
.
T Consensus 103 ~ 103 (514)
T PLN02985 103 C 103 (514)
T ss_pred h
Confidence 4
No 144
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.05 E-value=4.6e-09 Score=109.55 Aligned_cols=44 Identities=32% Similarity=0.453 Sum_probs=40.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
+.++||||||||++||+||+.++++|.+|+|||+....||.+..
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 35789999999999999999999999999999999999998754
No 145
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.05 E-value=9.6e-10 Score=106.91 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=51.8
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC--cEEEcCEEEEccCHHHHhhcC
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g--~~i~ad~VI~a~~~~~l~~ll 335 (536)
.++.+.|.+.++++|++|..++.|+++..+ +++++.|.+.++ .++.||+||+|+|.|....|+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 478888999999999999999999999874 555666777776 479999999999999535554
No 146
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.05 E-value=8.8e-09 Score=100.87 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=54.6
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~ 336 (536)
+.+++..|.+.+.++|++++.+++|++|..+ ++.++.|.+.+| +++||.||+|+|+++ ..+.+
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~-~~l~~ 198 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWA-GELLP 198 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhh-hhccc
Confidence 7899999999999999999999999999974 555667888777 899999999999998 45544
No 147
>PRK05868 hypothetical protein; Validated
Probab=99.05 E-value=2.2e-08 Score=98.87 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=39.7
Q ss_pred HcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH-HHhhcC
Q 009372 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (536)
Q Consensus 284 ~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~-~l~~ll 335 (536)
..|+++++++.|++|+.++++ +.|++.+|++++||.||-|-|.+ .+++.+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDS--VRVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCe--EEEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 357999999999999874333 35888899899999999999874 556655
No 148
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.05 E-value=4.3e-09 Score=106.89 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=46.0
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..+.+.|.+.+++.|++++.+ .|+.|.. +++.+++|.+ +|+.+.++.||+|||.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 468889999999999999876 7999876 4567777776 566899999999998875
No 149
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.03 E-value=1.4e-08 Score=105.91 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC-c--EEEc-CEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N--VIDG-DAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g-~--~i~a-d~VI~a~~~~~ 330 (536)
..++..|.+.+++.|++|+++++|++|..+ ++++++|...++ + .+.| +.||+|+|...
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 468899999999999999999999999874 677888876543 2 4776 68999997754
No 150
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=6e-09 Score=109.29 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=37.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCcee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~ 96 (536)
.++||+|||||+|||+||..+++.|.+|+|+|+....||.+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s 47 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHT 47 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcc
Confidence 46899999999999999999999999999999998766643
No 151
>PLN02815 L-aspartate oxidase
Probab=99.03 E-value=4.4e-09 Score=108.94 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHc-CcEEEeCcceEEEEEcCCC---CEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG---TVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g---~~~~v~~~---~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+. |++|++++.+++|..++++ ++++|... +|+ .+.|+.||+|||...
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 45778888888765 8999999999999875444 26777653 453 568999999998753
No 152
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.02 E-value=3e-09 Score=107.00 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..+-+-|.+.+.++|+++..++ |+++..+++|.+..|++.+|++++||.||-|+|...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 4677788888999999998774 888888788888899999999999999999999854
No 153
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=3.9e-09 Score=110.03 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+.|++|++++.|++|.. +++++.++.. .+|+ .+.|+.||+|||.+.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 46888899989888999999999999987 4677766653 3554 589999999998864
No 154
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=9.2e-09 Score=107.23 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcC----cEEEeCcceEEEEEcCCCCEEEEEEcC---Cc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLG----GEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G----~~i~~~~~V~~I~~~~~g~~~~v~~~~---g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+.+ ++++.++.++++..+++|++++|...+ |+ .+.|+.||+|||...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 457778877776543 789999999999875578888887643 33 578999999998754
No 155
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.01 E-value=1.8e-08 Score=103.60 Aligned_cols=42 Identities=36% Similarity=0.558 Sum_probs=38.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
+.++|||||||| +||+||+++++.|.+|+|||+....||.+.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 458899999999 999999999999999999999988888664
No 156
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.00 E-value=1.9e-07 Score=92.19 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.|-+.+.+.+. .+..+.+++.|++|+.++++ ..|++++|++++|+.||-|.|...
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~--~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDG--VLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCce--EEEEECCCCEEEeeEEEECCCccc
Confidence 44455666666 45577899999999975443 347889998999999999998543
No 157
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=3.7e-09 Score=110.28 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCC---CCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~---g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+.|++|++++.|++|..+++ |++++|.. .+|+ .+.|+.||+|||...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 46888899989889999999999999987543 77888765 3554 578999999998864
No 158
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.99 E-value=4.7e-09 Score=107.21 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ 333 (536)
.+...+.+.++++|+++++++.|++|..++++ + .+++.+|+++.+|.||+|+|...-..
T Consensus 217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 217 EISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-V-IVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-E-EEEECCCCEEEeCEEEEeecCCcccc
Confidence 56678888888999999999999999864343 2 36677788899999999998765333
No 159
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.99 E-value=7.9e-09 Score=104.41 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=47.9
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcC-CCCEEEEEEcC-CcEEEcCEEEEccCH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTN-GNVIDGDAYVFATPV 328 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~-~g~~~~v~~~~-g~~i~ad~VI~a~~~ 328 (536)
...+++.|.+.+++.|++|+++++|++|..++ ++++++|...+ +.++.|+.||+|+|.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 35788999999999999999999999998753 57777776543 357999999999984
No 160
>PRK07236 hypothetical protein; Provisional
Probab=98.99 E-value=4.3e-09 Score=104.84 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (536)
..++|+|||||++||++|..|++.|++|+|+|+++..-. . .|... ...++..++++++|+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~----------~g~gi--~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD---G----------RGAGI--VLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC---C----------CCcee--EeCHHHHHHHHHcCCCc
Confidence 347999999999999999999999999999999764210 0 11110 02456778889998864
No 161
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.98 E-value=2.1e-09 Score=112.90 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g~--~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+.+.|++|+.+++|++|.. ++|++++|... +|+ .+.|+.||+|||.+.
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 35677888888889999999999999997 46777776653 564 467999999998764
No 162
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.98 E-value=2.7e-09 Score=105.30 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=51.7
Q ss_pred cCCCeEEEecCCC----CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCc--EEEcCEEEEccCHHH
Q 009372 258 KHGSKMAFLDGNP----PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 258 ~~g~~~~~~~gg~----~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~--~i~ad~VI~a~~~~~ 330 (536)
..|..+..+.... ..++.+.|.+.++++|++|+++++|++++.+ ++.+..+.+.+|+ .+.||.||+|+|...
T Consensus 241 ~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 241 ALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 3455555544321 1367788889998999999999999999874 4445445555553 589999999999754
No 163
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.97 E-value=7.1e-10 Score=111.31 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC---CcEEEcCEEEEccCHHHHhhcCC
Q 009372 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GNVIDGDAYVFATPVDILKLQLP 336 (536)
Q Consensus 277 ~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~---g~~i~ad~VI~a~~~~~l~~ll~ 336 (536)
.|.+.+.+.|++|++++.|+++..+ ++++++|++.+ ..+++|+.||-||+-..+..+..
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG 156 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAG 156 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 3445556679999999999999984 66778888764 35899999999999776666654
No 164
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=1.1e-08 Score=106.88 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..+++.|.+.+.+ .|+++++++.|++|..+ ++++++|.. .+|+ .+.|+.||+|||...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4578888888866 58999999999999874 577777654 3554 588999999998864
No 165
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.96 E-value=9e-09 Score=115.22 Aligned_cols=44 Identities=43% Similarity=0.619 Sum_probs=40.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
...++||||||+|.|||+||..+++.|.+|+|||+....||.+.
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 34678999999999999999999999999999999999998764
No 166
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.95 E-value=1.3e-08 Score=104.52 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC--Cc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~--g~--~i~ad~VI~a~~~~~ 330 (536)
..+++.|.+.+. .|++|++++.|++|.. +++++.+|.+.+ |+ .+.|+.||+|||...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 357777877775 5899999999999987 467777776543 32 688999999998854
No 167
>PRK06116 glutathione reductase; Validated
Probab=98.94 E-value=7.2e-09 Score=105.35 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+...+.+.++++|+++++++.|++|..++++.+ .+.+.+|+++.+|.||+|+|...
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCc
Confidence 4566788888899999999999999987545433 47777888899999999998753
No 168
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.93 E-value=9.9e-09 Score=107.04 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred ccchHHHHHHHHH----cCcEEEeCcceEEEEEcCCCCEEEEEEc---CCc--EEEcCEEEEccCHH
Q 009372 272 ERLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 329 (536)
Q Consensus 272 ~~l~~~l~~~l~~----~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g~--~i~ad~VI~a~~~~ 329 (536)
..++..|.+.+.+ .|++|+++++|++|..+++|++++|... +|+ .+.|+.||+|||..
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 3566666665544 3799999999999987656788888764 343 58899999999875
No 169
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.93 E-value=3.3e-08 Score=100.10 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC-cEEEcCEEEEccCHHHHhh
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKL 333 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g-~~i~ad~VI~a~~~~~l~~ 333 (536)
.+.+.+.+.|+++|+++++++.|++|..++++. ..+++.+| +++.+|.||+|+|...-..
T Consensus 208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 208 MISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 456777888889999999999999998643442 34667777 5799999999998765333
No 170
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.93 E-value=3.5e-08 Score=102.54 Aligned_cols=42 Identities=48% Similarity=0.718 Sum_probs=38.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC--ccCceee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKIA 97 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~--~~GG~~~ 97 (536)
.++||||||+|.+||+||..+++.|.+|+|||+.. ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 47899999999999999999999999999999999 7888764
No 171
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.93 E-value=2.2e-08 Score=104.03 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..|+..|.+.+.+. |++++.++.|++|..+ ++++++|.. .+|+ .+.|+.||+|||...
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 46888888887664 7999999999999974 677777653 3563 688999999998754
No 172
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.93 E-value=7.9e-09 Score=99.38 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=43.0
Q ss_pred cchHHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+...+.+.+++ .+++|. ++.|++|.. +++++.+|.+.+|+.+.+|.||+|||...
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 344456666666 357884 678999988 57889999999999999999999999943
No 173
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.93 E-value=1e-07 Score=90.97 Aligned_cols=59 Identities=36% Similarity=0.511 Sum_probs=51.4
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.-.+++.|.+.++++|++|+++|.|..|.. +++.+..|++.+|+++.+|+||+|.|-..
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcch
Confidence 357889999999999999999999999998 45556679999999999999999997643
No 174
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.93 E-value=2e-08 Score=104.58 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=44.9
Q ss_pred ccchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+.+. +++++.++.|++|..+ ++++.+|.. .+|+ .+.|+.||+|||...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 35777888777664 7999999999999874 677776653 4563 689999999998754
No 175
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.93 E-value=1.6e-08 Score=86.27 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=35.7
Q ss_pred HHHHHHHHcCcEEE-eCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCH
Q 009372 277 PIVEHIQSLGGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 328 (536)
Q Consensus 277 ~l~~~l~~~G~~i~-~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~ 328 (536)
.+.+.+ ..|++|. .+.+|+.|...+++. .|.+.+|..+.+|+||+|+|.
T Consensus 106 ~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 106 RLLARL-PAGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHhh-cCCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 344444 3454433 467899999866663 488899999999999999974
No 176
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.92 E-value=5.4e-09 Score=106.78 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC--cEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g--~~i~ad~VI~a~~~~~ 330 (536)
.+...+.+.+++.|+++++++.|++|..++ +.+ .+.+.+| +++.+|.||+|+|...
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeCCcEEEEEeCEEEEecCCcc
Confidence 456677888889999999999999998643 333 3666666 4799999999998754
No 177
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.92 E-value=5e-09 Score=106.96 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=38.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
.++||+|||||++|++||..|++.|++|+|+|+.. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 56899999999999999999999999999999976 8998754
No 178
>PRK12831 putative oxidoreductase; Provisional
Probab=98.92 E-value=4e-08 Score=99.57 Aligned_cols=44 Identities=36% Similarity=0.454 Sum_probs=40.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
....+||+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 45678999999999999999999999999999999999999874
No 179
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.92 E-value=2.9e-07 Score=95.39 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.+..+|+|||||++||++|..|++.|++|+|+|++.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 567899999999999999999999999999999865
No 180
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.91 E-value=2.5e-08 Score=104.28 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+++.| ++|++++.|++|..+ ++++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 356777888887776 999999999999864 566666642 3453 689999999999865
No 181
>PRK08275 putative oxidoreductase; Provisional
Probab=98.91 E-value=3.7e-08 Score=102.37 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+++.|++|++++.|++|..++++++.+|.. .+|+ .+.|+.||+|||...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3578889998988999999999999998854677777763 3554 588999999998854
No 182
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.91 E-value=4.5e-08 Score=108.12 Aligned_cols=43 Identities=33% Similarity=0.520 Sum_probs=40.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
..+||+|||||+|||+||..|++.|++|+|+|+.+.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998864
No 183
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.89 E-value=2.2e-08 Score=102.74 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=46.5
Q ss_pred CccchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcC-Cc--EEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~-g~--~i~ad~VI~a~~~~~ 330 (536)
...++..|.+.+.+. |++|+.+++|++|..+ ++++++|.+.+ ++ ++.|+.||+|||...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 346888898888775 8999999999999863 67777776543 32 589999999998853
No 184
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.89 E-value=1.5e-08 Score=97.56 Aligned_cols=38 Identities=45% Similarity=0.717 Sum_probs=34.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCcee
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~ 96 (536)
+||+|||||++||+||..|++.|++|+|+|+.+ .||.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence 699999999999999999999999999999876 56654
No 185
>PRK06753 hypothetical protein; Provisional
Probab=98.89 E-value=6.2e-09 Score=103.39 Aligned_cols=35 Identities=34% Similarity=0.695 Sum_probs=32.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
+||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 48999999999999999999999999999998764
No 186
>PRK09897 hypothetical protein; Provisional
Probab=98.87 E-value=1.8e-08 Score=102.35 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=35.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CceEEEecCCccC-ceeee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLG-GKIAA 98 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g--~~V~vlE~~~~~G-G~~~~ 98 (536)
+++|+|||||++|+++|.+|.+.+ .+|+|+|++..+| |...+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 368999999999999999999864 5899999988777 55433
No 187
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.87 E-value=3.2e-08 Score=99.24 Aligned_cols=46 Identities=35% Similarity=0.455 Sum_probs=41.5
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCc-eEEEecCCccCceeee
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDVLGGKIAA 98 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~-V~vlE~~~~~GG~~~~ 98 (536)
.....+||+|||||++||++|++|.++|.. ++||||++.+||....
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh
Confidence 345678999999999999999999999998 9999999999998654
No 188
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=1e-08 Score=104.41 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=39.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
++||+|||||++|++||..+++.|++|+|+|+++.+||.|..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 489999999999999999999999999999988889998744
No 189
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.87 E-value=1.2e-07 Score=95.85 Aligned_cols=44 Identities=45% Similarity=0.610 Sum_probs=40.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
....++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 34568999999999999999999999999999999999998764
No 190
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.87 E-value=7.3e-09 Score=99.59 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=51.4
Q ss_pred CccchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEc-----CCcEEEcCEEEEccCHHHHhhc
Q 009372 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT-----NGNVIDGDAYVFATPVDILKLQ 334 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~-----~g~~i~ad~VI~a~~~~~l~~l 334 (536)
.+.|.+.|.+.+.++ |+++++++.|++|++.++|.+ .|++. +.++++|+.|++.+|.+++.-+
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 578999999999888 999999999999999878743 24432 2248999999999999886554
No 191
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.86 E-value=5.1e-08 Score=97.05 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=45.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (536)
.+||+|||||++||++|..|++.|++|+|+|+.+... ... +.|+..+ .++..++++++|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~--~~~---------~~~a~~l---~~~~~~~L~~lGl~~~ 64 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDY--VLG---------RIRAGVL---EQGTVDLLREAGVDER 64 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcc--cCC---------ceeEeeE---CHHHHHHHHHCCChHH
Confidence 4699999999999999999999999999999987410 000 1122222 3446688899998654
No 192
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.85 E-value=7.5e-08 Score=97.57 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=38.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc-cCceeee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV-LGGKIAA 98 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~-~GG~~~~ 98 (536)
++||+|||||++|++||..|++.|++|+|+|+++. +||.|..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCIN 45 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeec
Confidence 58999999999999999999999999999999864 6987643
No 193
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.85 E-value=4.5e-08 Score=97.36 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=51.7
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll 335 (536)
+.+++..|.+.+.+ |++|+++++|++|+.+++ . +.|++.+|.++.||+||+|+|+|+ ..++
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-~-~~v~t~~g~~~~a~~vV~a~G~~~-~~l~ 194 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-G-WQLLDANGEVIAASVVVLANGAQA-GQLA 194 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-e-EEEEeCCCCEEEcCEEEEcCCccc-cccc
Confidence 78999999999998 999999999999987433 3 458888887799999999999997 4444
No 194
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.85 E-value=9.6e-08 Score=96.85 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=37.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
++||+|||||++|++||..+++.|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999998 578998854
No 195
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.84 E-value=2.6e-08 Score=101.04 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009372 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (536)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ 333 (536)
..+...|.+.+++. |++++ +..|+++..++++.+.+|.+.+|..+.|+.||+|+|.+.-..
T Consensus 96 ~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ 157 (617)
T TIGR00136 96 VLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGK 157 (617)
T ss_pred HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCCC
Confidence 34556677777776 67775 457888876446778889999998999999999999996333
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.84 E-value=1.6e-08 Score=104.10 Aligned_cols=50 Identities=28% Similarity=0.348 Sum_probs=39.6
Q ss_pred HHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH
Q 009372 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (536)
Q Consensus 278 l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~ 329 (536)
+.+.+.+.|++++++++|++|..+++. ..|++.+|+++.+|+||+|+|..
T Consensus 273 l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 273 LEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCC
Confidence 455556678999999999999874333 34777788889999999999985
No 197
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.83 E-value=2.1e-08 Score=103.39 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=40.8
Q ss_pred HHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 277 ~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+.+.+.+.|+++++++.|++|...++. ..|++.+|+++.||.||+|+|...
T Consensus 271 ~l~~~~~~~gv~i~~~~~V~~I~~~~~~--~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 271 ALEEHVKEYDVDIMNLQRASKLEPAAGL--IEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecCCe--EEEEECCCCEEEcCEEEECCCCCc
Confidence 3555566678999999999999874333 347778888899999999999853
No 198
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.82 E-value=2e-08 Score=103.80 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHc-CcEEEeCcceEEEEEcC-----CCCEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~-----~g~~~~v~~~---~g~--~i~ad~VI~a~~~~~ 330 (536)
..+...|.+.+.+. |++|++++.|+++..++ ++++++|... +|+ .+.|+.||+|||...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 35777788877765 79999999999998643 3678887753 343 588999999998864
No 199
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=1e-07 Score=97.49 Aligned_cols=42 Identities=38% Similarity=0.503 Sum_probs=36.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEec------CCccCceee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA------RDVLGGKIA 97 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~------~~~~GG~~~ 97 (536)
.++||+|||||++|++||..|++.|.+|+|+|+ ...+||.|.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 468999999999999999999999999999998 345666653
No 200
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.81 E-value=5.8e-08 Score=87.59 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=47.4
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCC---CEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG---TVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g---~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
...++..+.+.+...|.++.+|-+|..|..+.++ ..+.|....|++++++.||-|++.+.
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 4567778888899999999999999999976443 23335555577999999999999865
No 201
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.81 E-value=1.1e-07 Score=97.06 Aligned_cols=41 Identities=32% Similarity=0.415 Sum_probs=37.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
++||+|||||++|++||..|++.|.+|+|+|++ .+||.|..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 589999999999999999999999999999985 67777754
No 202
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.81 E-value=3.6e-08 Score=94.48 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=41.7
Q ss_pred HHHHHHHHHc-CcEEEeCcceEEEEEc-CCCCEEEEEEcC--Cc----EEEcCEEEEccCHHHHhhcC
Q 009372 276 LPIVEHIQSL-GGEVRLNSRVQKIELN-DDGTVKNFLLTN--GN----VIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 276 ~~l~~~l~~~-G~~i~~~~~V~~I~~~-~~g~~~~v~~~~--g~----~i~ad~VI~a~~~~~l~~ll 335 (536)
..++..+.++ +++|++++.|++|..+ +++++++|+..+ +. .+.++.||+|+|+--..+||
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 3444444444 8999999999999764 466777777653 32 56789999999985556654
No 203
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.80 E-value=6.4e-07 Score=84.80 Aligned_cols=36 Identities=42% Similarity=0.559 Sum_probs=33.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
+.+|||||||++||++|..|.+.|++|+|+|++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 458999999999999999999999999999997654
No 204
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.80 E-value=1.2e-08 Score=102.76 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH-HhhcC
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~-l~~ll 335 (536)
.|.+.|.+.+. +..++++++|++|..++++ +.|++.+|+++++|.||.|.|.+. +++.+
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 44555655553 3568899999999875554 357788898999999999999864 44443
No 205
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.80 E-value=1.2e-07 Score=96.63 Aligned_cols=43 Identities=37% Similarity=0.435 Sum_probs=39.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
.++||+|||||++|++||..|++.|.+|+|+|+.+.+||.|..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 4689999999999999999999999999999998888998744
No 206
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.79 E-value=1.9e-07 Score=99.05 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=40.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
+..++|+|||||++||+||+.|++.|++|+|+|+.+.+||....
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 35679999999999999999999999999999999999998653
No 207
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.78 E-value=2.6e-08 Score=101.01 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..+...+.+.++++|+++++++.|++|..+ ++.+ .+.+.+| ++.+|.||+|+|...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCc
Confidence 346677888888999999999999999864 3333 3556566 699999999998765
No 208
>PRK06370 mercuric reductase; Validated
Probab=98.78 E-value=2.1e-07 Score=95.03 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=37.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
.++||+|||||++|++||..|++.|++|+|+|+. ..||.|..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 4699999999999999999999999999999986 56666643
No 209
>PTZ00367 squalene epoxidase; Provisional
Probab=98.78 E-value=2.2e-06 Score=88.43 Aligned_cols=64 Identities=31% Similarity=0.388 Sum_probs=47.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc-CceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCC
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL-GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~-GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (536)
...++||+|||||++|+++|+.|++.|++|+|+|+.... -.+. .|. ...++-.++++++|+.+
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~------------~G~----~L~p~g~~~L~~LGL~d 93 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRI------------VGE----LLQPGGVNALKELGMEE 93 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchh------------hhh----hcCHHHHHHHHHCCChh
Confidence 446789999999999999999999999999999986410 0000 111 12456678889999865
Q ss_pred c
Q 009372 133 R 133 (536)
Q Consensus 133 ~ 133 (536)
.
T Consensus 94 ~ 94 (567)
T PTZ00367 94 C 94 (567)
T ss_pred h
Confidence 3
No 210
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.78 E-value=1.7e-07 Score=95.77 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=38.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 5789999999999999999999999999999985 78998864
No 211
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.78 E-value=4.2e-08 Score=98.25 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEE---cCCcEEEcCEEEEccCHH-HHhhcCC
Q 009372 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVD-ILKLQLP 336 (536)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~~i~ad~VI~a~~~~-~l~~ll~ 336 (536)
.|.+.|.+.+.+. |++++++++|+++..++++ + .|++ .++++++||.||-|-|.+ .+++.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 5566677777654 7899999999999875444 2 3444 334579999999999885 4566653
No 212
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.77 E-value=1.8e-07 Score=102.81 Aligned_cols=44 Identities=39% Similarity=0.465 Sum_probs=40.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
+..++|+|||||+|||+||+.|++.|++|+|+|+.+.+||....
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 34679999999999999999999999999999999999997643
No 213
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.77 E-value=7.1e-08 Score=87.27 Aligned_cols=40 Identities=38% Similarity=0.605 Sum_probs=36.6
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
-|||||+|.|||+|+-.|...|-.|+++|+...+||..--
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999998789999999999998643
No 214
>PRK07538 hypothetical protein; Provisional
Probab=98.76 E-value=4.8e-08 Score=98.25 Aligned_cols=35 Identities=40% Similarity=0.605 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
+||+|||||++||++|..|++.|++|+|+|++..+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999997653
No 215
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.75 E-value=5.7e-08 Score=94.04 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=54.4
Q ss_pred CCCeEEEecCC-CCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC---Cc--EEEcCEEEEccCHH--H
Q 009372 259 HGSKMAFLDGN-PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVD--I 330 (536)
Q Consensus 259 ~g~~~~~~~gg-~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~---g~--~i~ad~VI~a~~~~--~ 330 (536)
.|+.+ |.+|. +-.++...++=.+..+|..+.-..+|.++..++++++.++...| |+ +|+|+.||.|||+. .
T Consensus 211 ~Ga~V-YyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDs 289 (680)
T KOG0042|consen 211 KGAMV-YYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDS 289 (680)
T ss_pred eeEEE-EecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHH
Confidence 34444 44443 33566777777777889999888899999988888887777654 43 68899999999884 3
Q ss_pred HhhcC
Q 009372 331 LKLQL 335 (536)
Q Consensus 331 l~~ll 335 (536)
++++-
T Consensus 290 Ir~Md 294 (680)
T KOG0042|consen 290 IRKMD 294 (680)
T ss_pred HHhhc
Confidence 44443
No 216
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.75 E-value=1.1e-07 Score=97.17 Aligned_cols=41 Identities=34% Similarity=0.490 Sum_probs=35.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
++|+|||||++||+||..|.+.|++|+++|+++.+||....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 58999999999999999999999999999999999998754
No 217
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.74 E-value=2.2e-08 Score=89.10 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=47.4
Q ss_pred CccchHHHHHHHHHcC-cEEEeCcceEEEEEcCCCCEEEEEEc---C-CcEEEcCEEEEccCHHHHhhcCCC
Q 009372 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT---N-GNVIDGDAYVFATPVDILKLQLPE 337 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~g~~~~v~~~---~-g~~i~ad~VI~a~~~~~l~~ll~~ 337 (536)
|+.|+..|++.+.+.| |++.++. |.++.. +.+++.++-.. + +....++++|+++|+|+ .+|+|.
T Consensus 146 P~lFc~~i~sea~k~~~V~lv~Gk-v~ev~d-Ek~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT-skllp~ 214 (380)
T KOG2852|consen 146 PYLFCHFILSEAEKRGGVKLVFGK-VKEVSD-EKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT-SKLLPF 214 (380)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEee-eEEeec-ccccccccchhhhcCceEEeeeeEEEEecCCCc-hhhccc
Confidence 8899999999998886 8887764 888863 45555444433 1 34567889999999998 677654
No 218
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.74 E-value=3e-07 Score=83.73 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=52.3
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCc--EEEcCEEEEccCHHHHhhcCCC
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDILKLQLPE 337 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~--~i~ad~VI~a~~~~~l~~ll~~ 337 (536)
++-+.|...+++.|+.+..+.+|.+.+. .+++++.|-+.++. .++||.+|+|+|...-+.|+.+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae 324 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAE 324 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhh
Confidence 5667888888899999999999999987 46778888888775 5789999999999875666543
No 219
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.73 E-value=2.7e-07 Score=91.71 Aligned_cols=70 Identities=24% Similarity=0.388 Sum_probs=52.9
Q ss_pred CCCeEEEecCCC------CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCc--EEEcCEEEEccCHHH
Q 009372 259 HGSKMAFLDGNP------PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 259 ~g~~~~~~~gg~------~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~--~i~ad~VI~a~~~~~ 330 (536)
.|+.+..+..+. -..+.+.+.+.|++.|++++++++|++++.++++ +.+++.+|+ ++++|.|++|+|-..
T Consensus 195 LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 195 LGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred cCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCcc
Confidence 565555543321 2467788888998888999999999999975555 457777775 699999999998753
No 220
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.72 E-value=2.7e-08 Score=91.83 Aligned_cols=254 Identities=19% Similarity=0.240 Sum_probs=124.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC----CCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~----g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 131 (536)
..+.+-|||+|+|||++|..|.+. |.+|.|+|.-...||..-........++-.|++-+...+..++++++.+.--
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemEnhfEc~WDlfrsIPSL 100 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREMENHFECLWDLFRSIPSL 100 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHHHHHHHHHHHHhcCccc
Confidence 457899999999999999999875 6699999999999998643222223344556666654555677777665322
Q ss_pred CcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHH-HhhcccchhhhcccccccccccccHH
Q 009372 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKV-KFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (536)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (536)
+.....-.+.++.+...+.+....+..+.- .. ++.. .....+..+. ..+..++. .--+.+++.++.
T Consensus 101 ei~naSvldEfy~~d~~dPn~s~cRli~k~---g~---rv~d-dg~~tl~~~~~~ei~kL~~------t~EE~L~~~tI~ 167 (587)
T COG4716 101 EIPNASVLDEFYWLDKDDPNSSNCRLIHKR---GR---RVDD-DGSFTLNNKARKEIIKLLM------TPEEKLDDLTIE 167 (587)
T ss_pred cCCCcHHHHHHHhccCCCCCccceeeeecc---cc---cccc-ccccccChhhHHHHHHHHc------CcHHhcCCccHH
Confidence 111111111222111111111111000000 00 0000 0000000000 00000000 001235678888
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCC----eEEEecCCCCccchHHHHHHHHHcC
Q 009372 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS----KMAFLDGNPPERLCLPIVEHIQSLG 286 (536)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~gg~~~~l~~~l~~~l~~~G 286 (536)
+|+...-+...+ +.-. ..+++...- -|+..+..++.+++..-.|. ...+-.-+..++++..|...|+++|
T Consensus 168 d~Fse~FF~sNF----W~yW-~tmFAFekW-hSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~~H~ 241 (587)
T COG4716 168 DWFSEDFFKSNF----WYYW-QTMFAFEKW-HSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLKSHG 241 (587)
T ss_pred HhhhHhhhhhhH----HHHH-HHHHhhhHH-HHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHHHcC
Confidence 887765333333 2211 111111111 12223333333333222221 1222223336789999999999999
Q ss_pred cEEEeCcceEEEEEcC-CCCEE--EE-EEcCCcEEE---cCEEEEccCH
Q 009372 287 GEVRLNSRVQKIELND-DGTVK--NF-LLTNGNVID---GDAYVFATPV 328 (536)
Q Consensus 287 ~~i~~~~~V~~I~~~~-~g~~~--~v-~~~~g~~i~---ad~VI~a~~~ 328 (536)
|++.+++.|+.|..+. .|+.+ .+ +..++++++ -|.|+++.+.
T Consensus 242 Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgs 290 (587)
T COG4716 242 VDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGS 290 (587)
T ss_pred CceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecce
Confidence 9999999999999753 34211 12 245565544 3456655443
No 221
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.72 E-value=8.8e-07 Score=90.16 Aligned_cols=43 Identities=42% Similarity=0.568 Sum_probs=39.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
...++|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4567999999999999999999999999999999999998764
No 222
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.71 E-value=3.3e-08 Score=92.52 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcC---------------CcEEEcCEEEEccCH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---------------GNVIDGDAYVFATPV 328 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~---------------g~~i~ad~VI~a~~~ 328 (536)
..+++..|-+.+++.|++|+-+-.+.++..+++|.+.+|.|.| |-.+.|+.-|+|-+-
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 4578889999999999999999999999999999999988754 236778888888755
No 223
>PTZ00058 glutathione reductase; Provisional
Probab=98.70 E-value=1.5e-07 Score=96.87 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=39.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
..++||+|||||++|++||..+++.|.+|+|+|++ .+||.|-.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 35789999999999999999999999999999985 78888754
No 224
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=1.8e-07 Score=92.54 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=40.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
...+|+|||||+|||++|++|.+.|++|+++||.+.+||....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 3569999999999999999999999999999999999998765
No 225
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.69 E-value=4.9e-07 Score=93.93 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCC--CCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
.+...+.+.+.+.+++|+.++.|+++..+++ |++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4445566666666789999999999997543 68888764 3454 578999999999874
No 226
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.69 E-value=3.4e-07 Score=98.85 Aligned_cols=43 Identities=37% Similarity=0.471 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
...++|+|||||+|||+||+.|++.|++|+|+|+.+.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4567999999999999999999999999999999988998864
No 227
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.68 E-value=8.2e-08 Score=99.74 Aligned_cols=41 Identities=34% Similarity=0.574 Sum_probs=36.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
..+||+|||||+|||+||..|++.|++|+|+|++ ..||.+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 4689999999999999999999999999999985 6777653
No 228
>PRK10262 thioredoxin reductase; Provisional
Probab=98.67 E-value=1.6e-07 Score=91.01 Aligned_cols=43 Identities=35% Similarity=0.587 Sum_probs=37.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
.+.+||+|||||++||+||..|++.|++|+++|+. ..||.+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 46789999999999999999999999999999965 56887654
No 229
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.66 E-value=2.4e-06 Score=86.91 Aligned_cols=43 Identities=33% Similarity=0.545 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
+...+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999774
No 230
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.65 E-value=2.5e-07 Score=94.84 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll 335 (536)
.+.+.+.+.|+++|+++++++.|++|...+ +. ..+++.+|+++.+|.||+|+|...-..++
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence 355778888889999999999999998643 32 34667788889999999999876533433
No 231
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.64 E-value=4.1e-07 Score=88.08 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=45.8
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCc-EEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~-~i~ad~VI~a~~~~~ 330 (536)
+.++.....+.|+++|++++++++|++|+. ++ |++.+|+ +|.++.||.|+|...
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCCcC
Confidence 467888888899999999999999999974 44 6777887 499999999998754
No 232
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.63 E-value=1.4e-06 Score=92.05 Aligned_cols=43 Identities=35% Similarity=0.534 Sum_probs=40.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
+..++|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 3578999999999999999999999999999999999999864
No 233
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.5e-07 Score=84.36 Aligned_cols=254 Identities=16% Similarity=0.177 Sum_probs=134.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeecc-------C-------------CCCeeeeceeeec
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD-------G-------------DGDWYETGLHIFF 115 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~-------~-------------~g~~~d~G~~~~~ 115 (536)
+++||+|+|-|+.-+.-+..|+..|.+|+.+|+++.-||..++.+. . ..+-+|+-+..+.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lm 82 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLM 82 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhh
Confidence 4599999999999999999999999999999999999999887440 0 0122333333333
Q ss_pred cCcchHHHHHHHhCCCCcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhh
Q 009372 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII 195 (536)
Q Consensus 116 ~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (536)
. ...+..++-+-++...+.+......+.... +++.+ +|..-.. .+ ....+.+.++.+.. .++....
T Consensus 83 A-n~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~--~k~~K------VP~t~~E---a~-~s~lmgl~eKrr~~-kFl~~V~ 148 (440)
T KOG1439|consen 83 A-NGELVKILIHTGVTRYLEFKSISGSFVYKK--GKIYK------VPATEAE---AL-TSPLMGLFEKRRVM-KFLKFVL 148 (440)
T ss_pred c-cchHHHHHHHhchhhheEEEeecceEEEEC--CeEEE------CCCCHHH---Hh-cCCccchhHHHHHH-HHHHHHh
Confidence 2 223455666667766555544333222211 12211 1111111 01 11222332222111 1111111
Q ss_pred c---ccc-cccc--cccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh--hcCC-CeEEEe
Q 009372 196 G---GQA-YVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFL 266 (536)
Q Consensus 196 ~---~~~-~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~ 266 (536)
. .++ -+.. ....++.+++...+......+.....+..... -+--+.+.......+..+.. ..+| ...-|+
T Consensus 149 n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~d-d~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP 227 (440)
T KOG1439|consen 149 NYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCD-DSYLDQPAKETLERILLYVRSFARYGKSPYLYP 227 (440)
T ss_pred hhhhhccccccccccccchHHHHHHHhcccccceeeeeeeeEEEec-chhccCccHHHHHHHHHHHHHHhhcCCCcceec
Confidence 1 011 1111 12237888888876554433221111100000 00011222222222222221 1122 234455
Q ss_pred cCCCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEcc
Q 009372 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFAT 326 (536)
Q Consensus 267 ~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~ 326 (536)
..| +..|.+++++...-.|+++.+|.++.+|..+.+|++.+|...++ ...++.||+-.
T Consensus 228 ~yG-lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~dp 285 (440)
T KOG1439|consen 228 LYG-LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVICDP 285 (440)
T ss_pred ccC-cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEecC
Confidence 555 77999999998888899999999999999877788877665443 66777666643
No 234
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.60 E-value=6.2e-07 Score=83.38 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=41.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
.++||+|||+|++|-.||...++.|++.+.+|++..+||.|-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 6899999999999999999999999999999999999999865
No 235
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.60 E-value=2.2e-06 Score=87.26 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=35.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG 94 (536)
+||+|||+|++|+++|+.|++.|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988876
No 236
>PLN02507 glutathione reductase
Probab=98.58 E-value=1.9e-06 Score=88.39 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=38.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEec---------CCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA---------RDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~---------~~~~GG~~~~ 98 (536)
.-++||+|||||++|+.||..+++.|.+|+|+|+ .+.+||.|-.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 4578999999999999999999999999999996 3457777643
No 237
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.54 E-value=2.9e-06 Score=86.48 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=36.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
++||+|||||.+|+.||..|++.|.+|+|+|++ .+||.|..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 468999999999999999999999999999986 47888754
No 238
>PLN02546 glutathione reductase
Probab=98.53 E-value=2.2e-06 Score=88.46 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=37.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC---------CccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR---------DVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~---------~~~GG~~~~ 98 (536)
..+|||+|||||.+|+.||..+++.|.+|+|+|+. ..+||.|-.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 34689999999999999999999999999999962 456776643
No 239
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.51 E-value=1.7e-06 Score=94.96 Aligned_cols=36 Identities=36% Similarity=0.443 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.++||+|||||.|||+||..+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999875
No 240
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.48 E-value=1.5e-05 Score=83.42 Aligned_cols=44 Identities=39% Similarity=0.568 Sum_probs=40.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
.....+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 34567999999999999999999999999999999999999764
No 241
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.47 E-value=1.1e-06 Score=80.11 Aligned_cols=42 Identities=45% Similarity=0.693 Sum_probs=36.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC--ccCceee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKIA 97 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~--~~GG~~~ 97 (536)
.++||+|||||.+||.||.+|+.+|.+|+|+|.+. .+||...
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 46799999999999999999999999999998764 4677663
No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.46 E-value=1.7e-06 Score=86.51 Aligned_cols=55 Identities=13% Similarity=0.267 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+.+.+.+.++++|+++++++.|++|.. ++. ..+++.+|+++.+|.||+|+|...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCCh
Confidence 3445677778889999999999999975 232 347788898999999999998754
No 243
>PRK02106 choline dehydrogenase; Validated
Probab=98.46 E-value=2e-06 Score=89.88 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-CCCceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~-~g~~V~vlE~~~~ 91 (536)
.++|+||||||.+|+.+|..|++ .|++|+|||+...
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 56899999999999999999999 7999999999854
No 244
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.46 E-value=2.6e-06 Score=63.50 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=30.9
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
+|+|||||+.|+-+|..|++.|.+|+|+|+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998755
No 245
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.45 E-value=4.2e-06 Score=86.91 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=41.0
Q ss_pred HHHHHHHH-HcCcEEEeCcceEEEEEcCCCCEEEEEEcCC-c---EEEcCEEEEccCHHHHhhc
Q 009372 276 LPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPVDILKLQ 334 (536)
Q Consensus 276 ~~l~~~l~-~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g-~---~i~ad~VI~a~~~~~l~~l 334 (536)
..+...+. ..|++|.+++.|++|..+ ++++++|++.++ + .+.++.||+|.|.--..+|
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHH
Confidence 34444443 446999999999999984 677888887543 2 3579999999988322443
No 246
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.44 E-value=2.3e-06 Score=87.67 Aligned_cols=44 Identities=36% Similarity=0.396 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
..++||+|||||.|||.||..+++.|.+|+|+|+....+|.+..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 46789999999999999999999999999999999888876644
No 247
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.41 E-value=3.5e-06 Score=81.72 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=44.7
Q ss_pred CccchHHHHHHHHH-cCcEEEeCcceEEEEEcCCCCEEEEEEcCC----cEEEcCEEEEccCH
Q 009372 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPV 328 (536)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g----~~i~ad~VI~a~~~ 328 (536)
...+++.|.+.+.+ .++++..++.+.+|..+++..+.+|.+.+. .++.|+.||+|||.
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 45788888888876 479999999999999854434547776533 47889999999966
No 248
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.35 E-value=3.1e-06 Score=91.46 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=46.2
Q ss_pred chHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
....+.+.++++|+++++++.|++|..++++....|++.+|+++.+|.||+|+|...
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 345677888899999999999999976433445567888999999999999998754
No 249
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.32 E-value=2.6e-06 Score=88.11 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=50.9
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc---CC--cEEEcCEEEEccCHHHHhhc
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKLQ 334 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g--~~i~ad~VI~a~~~~~l~~l 334 (536)
+.+++..+++.+.++|++|+++++|++|..+ ++.+++|++. +| .+|.|+.||+|+|+|+ ..+
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa-~~l 193 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA-GRI 193 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch-HHH
Confidence 7889999999999999999999999999974 4555566653 34 2699999999999987 444
No 250
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.31 E-value=5.9e-07 Score=86.05 Aligned_cols=44 Identities=36% Similarity=0.611 Sum_probs=40.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
+-..+++|||||+||++||..|++.|++|.|+|+++.+||+...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 44578999999999999999999999999999999999999765
No 251
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.31 E-value=9.3e-07 Score=95.62 Aligned_cols=43 Identities=40% Similarity=0.619 Sum_probs=40.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
..++|+|||||+|||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4579999999999999999999999999999999999998854
No 252
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.29 E-value=1.2e-06 Score=88.19 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=40.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHH--CCCceEEEecCCccCceeee
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLAD--AGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~--~g~~V~vlE~~~~~GG~~~~ 98 (536)
.+..++|+|||||+||++||+.|++ .|++|+|+|+.+.+||..+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3456799999999999999999997 69999999999999998764
No 253
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.29 E-value=1.4e-05 Score=74.70 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.0
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
..+...||+|||||++|.+-|+.|++.|.+|.|+|+.
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3456789999999999999999999999999999986
No 254
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=3.8e-06 Score=77.21 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=43.1
Q ss_pred CCCCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 51 SPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 51 ~~~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
.....+++|.+|||||-.|+++|+..++.|.+|.|+|..-.+||.|-.
T Consensus 14 ~a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 14 MAADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred ccccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 344567999999999999999999999999999999998899998865
No 255
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=7.2e-06 Score=79.77 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CceEEEecCCccCcee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADA--G-HKPLLLEARDVLGGKI 96 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~--g-~~V~vlE~~~~~GG~~ 96 (536)
+++|+|||+|++|+.+|.+|.+. . ..|.|+|.+...|+-+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 47999999999999999999986 2 2399999998877544
No 256
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.27 E-value=1e-06 Score=96.10 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=40.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
+..++|+|||||+|||+||+.|++.|++|+|+|+.+.+||...
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 4578999999999999999999999999999999999999875
No 257
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=2.3e-06 Score=83.76 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHHc-CcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhc
Q 009372 278 IVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (536)
Q Consensus 278 l~~~l~~~-G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~l 334 (536)
|.+.++.. +..|. ...|+.|..+++.++++|++.+|..+.|+.||+|||-..-.++
T Consensus 106 mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 106 MKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 33444332 45663 4457777764333588999999999999999999998864444
No 258
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.26 E-value=1.4e-05 Score=80.46 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~ 329 (536)
.+.+.+.+.|+++|+++++++.|++|.. + .|++.+|+++.+|.||.|+|..
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCC
Confidence 4667778889999999999999999963 2 2667889899999999998853
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.26 E-value=2.1e-05 Score=79.59 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+...+.+.++++|+++++++.|++|.. . .|++.+|+++.+|.||+|+|...
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEeCEEEECcCCCc
Confidence 4566788888899999999999999962 2 25667788899999999998643
No 260
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.24 E-value=1.6e-05 Score=81.04 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..+.+.+.+.+++.|++++++++|++|.. ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 35666777888889999999999999964 344444555544 799999999998753
No 261
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.23 E-value=4.5e-06 Score=90.26 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=44.6
Q ss_pred chHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHH
Q 009372 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (536)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~ 329 (536)
+...+.+.++++|+++++++.|++|.. ++....|++.+|+++.+|.||+|+|..
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCC
Confidence 345567788889999999999999974 345566888899999999999999864
No 262
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.22 E-value=2.1e-05 Score=79.89 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=33.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
+++|++|||||.+|..||.. ..|.+|+|+|+ +.+||.|-.
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 35899999999999998754 46999999998 567888855
No 263
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.17 E-value=2.5e-06 Score=91.88 Aligned_cols=44 Identities=39% Similarity=0.589 Sum_probs=40.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
+..++|+|||||+|||+||+.|++.|++|+|+|+.+.+||.+..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45679999999999999999999999999999999999998754
No 264
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.2e-06 Score=80.95 Aligned_cols=43 Identities=40% Similarity=0.568 Sum_probs=35.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
..+||+|||||++||+||.++++.+.+++|++.....||....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~ 44 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTK 44 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcccc
Confidence 4689999999999999999999999995555555667776654
No 265
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.14 E-value=2.3e-06 Score=87.39 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=37.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
.++||+|||||++|++||..|++.|.+|+|+|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 358999999999999999999999999999999 67888775
No 266
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.11 E-value=7.3e-05 Score=72.51 Aligned_cols=114 Identities=23% Similarity=0.339 Sum_probs=76.6
Q ss_pred cccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcCCCeEEEecCCCCccchHHHHHHHHHc
Q 009372 206 GLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL 285 (536)
Q Consensus 206 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~ 285 (536)
..+.+++|++.|+++.+.++++.+..+..++.+. ++.+...+..+. +..+..+. +.|| -.+++++|.+. .
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla----~a~~gl~s-V~GG-N~qI~~~ll~~---S 138 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSLA----GATGGLWS-VEGG-NWQIFEGLLEA---S 138 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhheeee----eccCCceE-ecCC-HHHHHHHHHHH---c
Confidence 4789999999999999999999999998888763 455544332221 12233444 4444 36777777764 5
Q ss_pred CcEEEeCcceEEE-EEcCCCC-EEEEEEcC--Cc-EEEcCEEEEccCHHH
Q 009372 286 GGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--GN-VIDGDAYVFATPVDI 330 (536)
Q Consensus 286 G~~i~~~~~V~~I-~~~~~g~-~~~v~~~~--g~-~i~ad~VI~a~~~~~ 330 (536)
|+++ +|++|++| ...+++. ...|...+ +. .-.+|.||+|+|...
T Consensus 139 ~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 139 GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 7899 99999999 4434443 22344433 22 344799999999953
No 267
>PRK14694 putative mercuric reductase; Provisional
Probab=98.10 E-value=3.7e-06 Score=85.92 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhc
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~l 334 (536)
.+...+.+.+++.|+++++++.|++|..+ ++. ..+.+.++ ++.+|.||+|+|...-..+
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAG-TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCC-EEEeCEEEEccCCCCCcCC
Confidence 56677888888999999999999999864 332 23555555 7999999999987653333
No 268
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00021 Score=66.75 Aligned_cols=248 Identities=16% Similarity=0.196 Sum_probs=127.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccC-------------------CCCeeeeceeeecc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-------------------DGDWYETGLHIFFG 116 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~ 116 (536)
..+||+|+|-|+.-..-+..|+-.|.+|+++|+++.-|+..++.+.. ..+-+|+-+..+..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A 84 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA 84 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence 47999999999999999999999999999999999999888774410 01223333433332
Q ss_pred CcchHHHHHHHhCCCCcccccccceeeeccCCCCccccccCCCCCCcchhHHHHHHhcCCCCChhHHHHhhcccchhhhc
Q 009372 117 AYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIG 196 (536)
Q Consensus 117 ~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (536)
...+..++.+-|+...+++......+.... +++.+ +|.....+ .....++..++-+.. .++.....
T Consensus 85 -~s~l~~iLi~t~v~~YLefk~i~~~~~~~~--~k~~k------VP~ne~ei----~~s~~lsL~eKr~vm-rFl~~V~n 150 (434)
T COG5044 85 -NSELLKILIETGVTEYLEFKQISGSFLYRP--GKIYK------VPYNEAEI----FTSPLLSLFEKRRVM-RFLKWVSN 150 (434)
T ss_pred -cchHHHHHHHhChHhheeeeeccccEEecC--CcEEE------CCccHHhh----hcCCCcchhhHHHHH-HHHHHHHh
Confidence 233556666677776655544333222211 12111 11111111 112223332221111 11111000
Q ss_pred ccc---cccc-cccccHHHHH-HHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh--hcCC-CeEEEecC
Q 009372 197 GQA---YVEA-QDGLTVQEWM-RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFLDG 268 (536)
Q Consensus 197 ~~~---~~~~-~~~~s~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~g 268 (536)
+.. .+.+ ..+.++.+++ +..++.......+...+... ++ -+.+.......+..++. ..+| +...|+.-
T Consensus 151 ~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~---ld-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~Y 226 (434)
T COG5044 151 YAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS---LD-LDIPAREALERILRYMRSFGDYGKSPYLYPRY 226 (434)
T ss_pred HHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh---cc-ccCCchHHHHHHHHHHHhhcccCCCcceeecc
Confidence 000 0001 1112233333 33444433222222222221 12 22233333333333332 2233 23445555
Q ss_pred CCCccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEc
Q 009372 269 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 325 (536)
Q Consensus 269 g~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a 325 (536)
| +..|.+++++...-.|+++.+|+++.+|....+ +.+|.. ++.+..|.+||..
T Consensus 227 G-l~El~QGFaRssav~GgtymLn~~i~ein~tk~--v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 227 G-LGELSQGFARSSAVYGGTYMLNQAIDEINETKD--VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred C-chhhhHHHHHhhhccCceeecCcchhhhccccc--eeeeec-CcceeecCcccCC
Confidence 5 789999999998888999999999999976322 333433 3447889988874
No 269
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.09 E-value=3.4e-06 Score=86.16 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=35.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
+||+|||||++|++||..|++.|.+|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999876 677664
No 270
>PRK07846 mycothione reductase; Reviewed
Probab=98.09 E-value=5.2e-05 Score=76.92 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
++|++|||||++|.+||.. ..|.+|+|+|+ +.+||.|-.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n 39 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLN 39 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccC
Confidence 3899999999999999866 45999999998 467887754
No 271
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.07 E-value=6.4e-06 Score=81.67 Aligned_cols=43 Identities=35% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHH-HCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~-~~g~~V~vlE~~~~~GG~~~~ 98 (536)
..+.|+|||||+||+.||.+|+ +.|++|+|+|+.+.+||..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4568999999999999999876 569999999999999999875
No 272
>PRK14727 putative mercuric reductase; Provisional
Probab=98.07 E-value=5.3e-06 Score=84.92 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=40.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
+.++||+|||||++|+++|+.|++.|.+|+|+|+.+.+||.|..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 45689999999999999999999999999999998899999854
No 273
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.05 E-value=6e-06 Score=87.96 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=37.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCce
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~ 95 (536)
.+..++|+|||||+|||+||++|++.|++|+|+|+.+..|+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 346789999999999999999999999999999998765553
No 274
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.05 E-value=7.1e-06 Score=83.75 Aligned_cols=43 Identities=42% Similarity=0.622 Sum_probs=39.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
+..++|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 4567999999999999999999999999999999999998764
No 275
>PRK13748 putative mercuric reductase; Provisional
Probab=98.04 E-value=4.5e-06 Score=87.59 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHh
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~ 332 (536)
.+...+.+.+++.|+++++++.|++|..+ ++.+ .+.+.++ ++.+|.||+|+|...-.
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCC
Confidence 46677888888999999999999999864 3333 3556555 79999999999875433
No 276
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00015 Score=68.44 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=78.6
Q ss_pred cccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh--hcCCCe-EEEecCCCCccchHHH
Q 009372 202 EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHGSK-MAFLDGNPPERLCLPI 278 (536)
Q Consensus 202 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~-~~~~~gg~~~~l~~~l 278 (536)
.+..+.++.+||++.++.+.+..-++.++. ..+.++.+....+.....++. +.+|.. ..|+--| -+.|.+++
T Consensus 218 ~~~~e~~F~EyL~~~rltp~lqs~vl~aIa----M~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYG-qGELpQcF 292 (547)
T KOG4405|consen 218 VEFRERPFSEYLKTMRLTPKLQSIVLHAIA----MLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYG-QGELPQCF 292 (547)
T ss_pred HHhhcCcHHHHHHhcCCChhhHHHHHHHHH----hcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccC-CCcchHHH
Confidence 344568999999999988776554443332 234555666666655555543 344433 3333333 56899999
Q ss_pred HHHHHHcCcEEEeCcceEEEEEcCCC-CEEEEEEcCCcEEEcCEEEEcc
Q 009372 279 VEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGNVIDGDAYVFAT 326 (536)
Q Consensus 279 ~~~l~~~G~~i~~~~~V~~I~~~~~g-~~~~v~~~~g~~i~ad~VI~a~ 326 (536)
.+.+.-.|+-..+..+|+.|..+... ....+....|+.+.++++|++-
T Consensus 293 CRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~ 341 (547)
T KOG4405|consen 293 CRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP 341 (547)
T ss_pred HHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence 99999999999999999999875332 1122334567788888888753
No 277
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.01 E-value=7e-06 Score=80.09 Aligned_cols=36 Identities=42% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
+.||+|||||++|+.+|+.|++.|++|+|+|+++..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 359999999999999999999999999999987654
No 278
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.99 E-value=1e-05 Score=85.65 Aligned_cols=43 Identities=40% Similarity=0.612 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
...++|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 3457999999999999999999999999999999999999874
No 279
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.99 E-value=5.5e-05 Score=74.81 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+...+.+.++++|+++++++.|++|.. + .|++.+|+++.+|.||+|+|...
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCCh
Confidence 4556777888899999999999999952 2 26677888999999999998643
No 280
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.98 E-value=6.9e-06 Score=80.85 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.1
Q ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEecCCccCce
Q 009372 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGK 95 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~--g~~V~vlE~~~~~GG~ 95 (536)
||+|||||+|||++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999998877763
No 281
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.98 E-value=7.8e-06 Score=83.33 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..+.+.+.+.|+++|+++++++.|++|..++++. ..|++.+|+++.+|.||+|+|...
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCc
Confidence 4566788888999999999999999998644442 346667787899999999998754
No 282
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=78.90 Aligned_cols=43 Identities=37% Similarity=0.493 Sum_probs=40.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
...+|+|||||++||+||+.|++.|++|+|+|+.+..||...-
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 3479999999999999999999999999999999999999864
No 283
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.89 E-value=0.00012 Score=70.99 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=56.8
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~ 336 (536)
..+-+.+.+.++++|+++++++.+.++.-+.+|++..|.+.+|.++.||.||+.+|......++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 35667888899999999999999999998888999999999999999999999999876555543
No 284
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.88 E-value=1.5e-05 Score=83.57 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=38.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecC-CccCceeee
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGKIAA 98 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~-~~~GG~~~~ 98 (536)
+|||+|||||.+|..||..+++.|.+|+|+|+. ..+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 689999999999999999999999999999974 468998755
No 285
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.88 E-value=0.00012 Score=72.69 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=39.7
Q ss_pred HHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 278 l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
+.+.+++.|++++++++|++|..++++ ..|++.+|+++.+|.||+|+|...
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSG--IRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCE--EEEEEcCCcEEECCEEEECcCCCc
Confidence 344456678999999999999864332 347788898999999999998754
No 286
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.87 E-value=2.5e-05 Score=79.88 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=39.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
..++|+|||||++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999998774
No 287
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.85 E-value=1.7e-05 Score=77.92 Aligned_cols=37 Identities=38% Similarity=0.366 Sum_probs=33.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG 94 (536)
.||+|||||++|+.||+.|++.|++|+|+|+++..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3899999999999999999999999999998876543
No 288
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.83 E-value=2.2e-05 Score=70.46 Aligned_cols=33 Identities=48% Similarity=0.581 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
||+|||||++|++||..|++.+.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987543
No 289
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=0.00023 Score=72.92 Aligned_cols=34 Identities=41% Similarity=0.538 Sum_probs=31.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 5999999999999999999999999999997543
No 290
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.80 E-value=6.9e-06 Score=70.05 Aligned_cols=66 Identities=30% Similarity=0.367 Sum_probs=47.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCc--chHHHHHHHhCCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY--PNIQNLFGELGIN 131 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~--g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~--~~~~~l~~~lg~~ 131 (536)
.+.||+|||+|-+||+|||.++++ ..+|.|+|+.-.+||-.. +|++.|.... ....-+++++|++
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW-----------LGGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW-----------LGGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc-----------ccchhhhhhhhcChHHHHHHHhCCC
Confidence 356999999999999999999965 579999999888777553 4555443211 1133467788876
Q ss_pred C
Q 009372 132 D 132 (536)
Q Consensus 132 ~ 132 (536)
-
T Consensus 144 Y 144 (328)
T KOG2960|consen 144 Y 144 (328)
T ss_pred c
Confidence 3
No 291
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.80 E-value=2.8e-05 Score=81.79 Aligned_cols=45 Identities=36% Similarity=0.490 Sum_probs=41.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
....++|+|||+|++||+||-.|-+.|+.|+|+|+.+++||...-
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 345679999999999999999999999999999999999998753
No 292
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.75 E-value=5e-05 Score=74.56 Aligned_cols=43 Identities=37% Similarity=0.423 Sum_probs=39.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~ 98 (536)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||....
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 3469999999999999999999999999999999999987643
No 293
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.73 E-value=3.4e-05 Score=78.82 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC---cEEEcCEEEEccCHHHHhh
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVDILKL 333 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g---~~i~ad~VI~a~~~~~l~~ 333 (536)
..+.+.+.+.|+++|++|++++.+++|...+++ ..|+..+| +++.+|.||+|+|...-..
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAK--VKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCe--EEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 345677788888999999999999999864333 23555554 3799999999998754333
No 294
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.69 E-value=4.4e-05 Score=77.86 Aligned_cols=55 Identities=7% Similarity=0.128 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC--cEEEcCEEEEccCHHH
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDI 330 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g--~~i~ad~VI~a~~~~~ 330 (536)
.+.+.+.+.++++|+++++++.|++|..+ ++.+ .+.. +| +++.+|.||+|+|...
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCcc
Confidence 46677888888899999999999999863 3322 2333 44 3699999999998654
No 295
>PRK13984 putative oxidoreductase; Provisional
Probab=97.69 E-value=6.3e-05 Score=79.53 Aligned_cols=43 Identities=40% Similarity=0.518 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceee
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~ 97 (536)
...++|+|||+|++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4567999999999999999999999999999999999999764
No 296
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.65 E-value=0.00047 Score=70.10 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=38.2
Q ss_pred HHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 280 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 280 ~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
+.++++|+++++++.|++|..++++ ..|++.+|+++.+|.||+|+|...
T Consensus 215 ~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 215 RNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCc
Confidence 3455678999999999999864444 236677788899999999998743
No 297
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.62 E-value=0.00055 Score=70.06 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.+|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 589999999999999999999999999999753
No 298
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.62 E-value=0.0007 Score=69.16 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC---CCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADA---GHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~---g~~V~vlE~~~~~ 92 (536)
..+|+|||||..|+-.|..+... |.+|+|+|+.+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 35899999999999999877643 8999999987664
No 299
>PLN02507 glutathione reductase
Probab=97.61 E-value=0.00058 Score=70.18 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=38.7
Q ss_pred HHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 279 ~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+.|++.|++|++++.|++|..++++ + .+.+.+|+++.+|.||+|+|...
T Consensus 251 ~~~l~~~GI~i~~~~~V~~i~~~~~~-~-~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 251 ARNLEGRGINLHPRTNLTQLTKTEGG-I-KVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeCCe-E-EEEECCCcEEEcCEEEEeecCCC
Confidence 34455678999999999999864333 2 46677888899999999998754
No 300
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00029 Score=67.90 Aligned_cols=41 Identities=34% Similarity=0.511 Sum_probs=34.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC-CccCce
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGK 95 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~-~~~GG~ 95 (536)
...+||||||||-||+-||...++.|.+.++|-.+ +.+|-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~m 67 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEM 67 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccccc
Confidence 57899999999999999999999999998888765 344433
No 301
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.60 E-value=0.00056 Score=69.86 Aligned_cols=50 Identities=28% Similarity=0.327 Sum_probs=38.7
Q ss_pred HHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 279 ~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+.|+++|+++++++.|++|+.++++ + .+.+.+|+++.+|.||+|+|...
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECCCcEEEecEEEEeecCCc
Confidence 34455678999999999999864333 3 36677888899999999998754
No 302
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.59 E-value=6.6e-05 Score=81.18 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~--g~~V~vlE~~~~ 91 (536)
++|+|||||++||++|..|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 5899999999999999999998 899999999764
No 303
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.58 E-value=0.00056 Score=68.97 Aligned_cols=39 Identities=49% Similarity=0.712 Sum_probs=35.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCce
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~ 95 (536)
..+++|||+|..||.+|..|+++|++|+++|+.++++|.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 579999999999999999999999999999998775553
No 304
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.57 E-value=0.0008 Score=68.11 Aligned_cols=48 Identities=29% Similarity=0.384 Sum_probs=36.8
Q ss_pred HHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 279 ~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+.+++.|+++++++.|++|.. ++.+ +.+.+|+++.+|.||+|+|...
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccC
Confidence 3444567899999999999975 3333 4566788999999999998753
No 305
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.56 E-value=0.00018 Score=69.67 Aligned_cols=35 Identities=34% Similarity=0.394 Sum_probs=27.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g-~~V~vlE~~~~ 91 (536)
.+|+|+||.|+++|+-|..|.+.+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 479999999999999999999885 89999998764
No 306
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.52 E-value=0.00058 Score=66.48 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=44.9
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCC-cEEEcCEEEEccCHHH
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI 330 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g-~~i~ad~VI~a~~~~~ 330 (536)
...+++.|.+.+++.||+|+++++|++|. +++ ..+.+..+ +++.||+||+|||...
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEecCEEEEcCCCcc
Confidence 56788999999999999999999999992 333 34666443 4699999999998744
No 307
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.50 E-value=0.00072 Score=70.64 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=49.3
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+.|++|+.++.++++..+++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 5688899988888899999999999999865788888875 3554 578999999998754
No 308
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00081 Score=58.29 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhc-CCCc
Q 009372 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPEN 338 (536)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~l-l~~~ 338 (536)
.|++.|.+..++.|.+|.+.+ |.++...+. ...+.++.+ .++||.||+||++.+ ++| +|..
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ssk--pF~l~td~~-~v~~~avI~atGAsA-kRl~~pg~ 132 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITET-VSKVDLSSK--PFKLWTDAR-PVTADAVILATGASA-KRLHLPGE 132 (322)
T ss_pred HHHHHHHHHHHhhcceeeeee-hhhccccCC--CeEEEecCC-ceeeeeEEEecccce-eeeecCCC
Confidence 344556666777788997765 889887433 333656555 799999999999987 555 5543
No 309
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.0011 Score=67.94 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 589999999999999999999999999999753
No 310
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.00019 Score=67.31 Aligned_cols=43 Identities=28% Similarity=0.283 Sum_probs=38.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCceEEEecCCccCceeee
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAA 98 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~--g~~V~vlE~~~~~GG~~~~ 98 (536)
....|.|||+|+||+.+|++|+++ +.+|.|+|+.+.+.|..+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 445999999999999999999995 6899999999999998765
No 311
>PRK07846 mycothione reductase; Reviewed
Probab=97.44 E-value=0.0012 Score=67.14 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=37.1
Q ss_pred cCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009372 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 285 ~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll 335 (536)
.|+++++++.|++|..+ ++. ..+.+.+|+++.+|.||+|+|...-..++
T Consensus 219 ~~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred cCeEEEeCCEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCcccc
Confidence 46899999999999864 333 34677788889999999999886534443
No 312
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.44 E-value=0.0014 Score=66.82 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.+++|||||.+|+.+|..|.+.|.+|+|+|+.+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4899999999999999999999999999998654
No 313
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00016 Score=74.76 Aligned_cols=36 Identities=42% Similarity=0.484 Sum_probs=33.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..++|+||||+|.+|...|..|++.|.+|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 467999999999999999999998899999999963
No 314
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00051 Score=63.58 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCcEEEeCcceEEEEEc-CCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhc-CCCc
Q 009372 276 LPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPEN 338 (536)
Q Consensus 276 ~~l~~~l~~~G~~i~~~~~V~~I~~~-~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~l-l~~~ 338 (536)
..|.++.++..+++..-.+++++... ..+....|++.+|-.++++.||++|++.- +.+ +|.+
T Consensus 270 ~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW-Rn~nvPGE 333 (520)
T COG3634 270 AALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW-RNMNVPGE 333 (520)
T ss_pred HHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch-hcCCCCch
Confidence 33444444555566555566677653 23435579999999999999999999864 443 5553
No 315
>PRK14727 putative mercuric reductase; Provisional
Probab=97.27 E-value=0.0024 Score=65.54 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=38.4
Q ss_pred HHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009372 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (536)
Q Consensus 279 ~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ 333 (536)
.+.+++.|+++++++.|++|..++++ ..+.+.++ ++.+|.||+|+|...-..
T Consensus 235 ~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 235 TACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 44455678999999999999864333 23556566 699999999999865333
No 316
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.26 E-value=0.0028 Score=64.46 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=37.0
Q ss_pred cCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009372 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (536)
Q Consensus 285 ~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll 335 (536)
.|+++++++.|++|..++++ + .+++.+|+++.+|.||+|+|...-..++
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~-v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDG-V-TLTLDDGSTVTADVLLVATGRVPNGDLL 270 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCe-E-EEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence 46899999999999864333 3 4667778789999999999876534443
No 317
>PLN02546 glutathione reductase
Probab=97.24 E-value=0.0033 Score=65.20 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009372 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (536)
Q Consensus 279 ~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ 333 (536)
.+.++++|+++++++.|++|..++++.+ .+.+.+++...+|.||+|+|...-..
T Consensus 300 ~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 300 AEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred HHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCC
Confidence 3445567899999999999986444533 35565554344899999998765333
No 318
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.22 E-value=0.0033 Score=64.35 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999997543
No 319
>PRK14694 putative mercuric reductase; Provisional
Probab=97.21 E-value=0.0035 Score=64.21 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
.+|+|||+|.+|+-.|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999863
No 320
>PRK13748 putative mercuric reductase; Provisional
Probab=97.20 E-value=0.0032 Score=66.25 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
.+|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 58999999999999999999999999999974
No 321
>PLN02785 Protein HOTHEAD
Probab=97.17 E-value=0.00049 Score=71.75 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.....+|+||||||.+|+..|..|++ +.+|+|||+..
T Consensus 51 ~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 51 GGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 34567999999999999999999999 58999999964
No 322
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.17 E-value=0.0037 Score=65.85 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4899999999999999999999999999998644
No 323
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.14 E-value=0.0039 Score=63.92 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~ 88 (536)
.+++|||||..|+-.|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 3799999999999999999999999999986
No 324
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.02 E-value=0.0078 Score=61.59 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..+|+|||+|.+|+-.|..|++.|.+|+|+|+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3589999999999999999999999999999754
No 325
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.97 E-value=0.0019 Score=61.55 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=35.4
Q ss_pred cCcEEEeCcceEEEEE------cCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 285 LGGEVRLNSRVQKIEL------NDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 285 ~G~~i~~~~~V~~I~~------~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..+++...+.|..+.. ++++.+..+++.+|..+.+|.+|-|-+...
T Consensus 166 ~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns 217 (481)
T KOG3855|consen 166 DNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNS 217 (481)
T ss_pred CceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccc
Confidence 3588888888777664 355666678899998999999988887754
No 326
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0013 Score=60.83 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=44.5
Q ss_pred CccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEc---CCc--EEEcCEEEEccCHHHHh
Q 009372 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDILK 332 (536)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~---~g~--~i~ad~VI~a~~~~~l~ 332 (536)
-+.+++.+.+.+++.|+.+...+..++|++.++|+. .|... .++ +-.+|.|+.|+|-..+.
T Consensus 237 Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 237 DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccch
Confidence 457788888999999999999988889988777762 23322 222 34688999999875433
No 327
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.72 E-value=0.017 Score=56.04 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=26.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC--ceEEEecC
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~--~V~vlE~~ 89 (536)
.....+|+|||||.++.-++..|.+.+. +|+++=++
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 4467799999999999999999999864 78877654
No 328
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0016 Score=60.11 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
..|-|||||.||.-|||.|+++|..|.++|.++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4689999999999999999999999999998755
No 329
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.68 E-value=0.0045 Score=63.63 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 276 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
..|.+.+++.|.++++++.++.|.. ++++.++..++|..+.||.||.|++...
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEeccccc
Confidence 3467778889999999999999974 6677889999999999999999997743
No 330
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.48 E-value=0.0033 Score=62.49 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g--~~V~vlE~~~ 90 (536)
++|||||||+||+++|..|.+.+ .+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 58999999999999999998864 5899999864
No 331
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.20 E-value=0.0093 Score=59.81 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=34.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG 94 (536)
..+++|||||+.|+--|..+++.|.+|+|+|+.+++-.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 44899999999999999999999999999999877543
No 332
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.17 E-value=0.0086 Score=59.90 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=34.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCce
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~ 95 (536)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence 458999999999999999999999999999998776543
No 333
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.13 E-value=0.0059 Score=52.03 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=29.8
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
+|+|||||..|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998764
No 334
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.12 E-value=0.0064 Score=61.84 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC-CCceEEEecCCcc
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL 92 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~-g~~V~vlE~~~~~ 92 (536)
...++|.||||||-||+..|..|++. ..+|+|||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 46789999999999999999999997 5799999996543
No 335
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.93 E-value=0.0068 Score=55.29 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCc
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 338 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~~~ 338 (536)
-++..-|.+.+.++|+++. ..+|+++.. + .+ -.+|.||.|+|.+. ..|..+.
T Consensus 151 ~~ylpyl~k~l~e~Gvef~-~r~v~~l~E--------~--~~---~~~DVivNCtGL~a-~~L~gDd 202 (342)
T KOG3923|consen 151 PKYLPYLKKRLTENGVEFV-QRRVESLEE--------V--AR---PEYDVIVNCTGLGA-GKLAGDD 202 (342)
T ss_pred hhhhHHHHHHHHhcCcEEE-EeeeccHHH--------h--cc---CCCcEEEECCcccc-ccccCCc
Confidence 4677888999999999984 555766642 1 11 23899999999997 7777654
No 336
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.87 E-value=0.011 Score=51.70 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=27.5
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
.|.|||+|..|...|..++..|++|+++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999975
No 337
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.011 Score=60.70 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..+|+|||+|.+|+++|..|++.|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999764
No 338
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.82 E-value=0.0088 Score=52.36 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
++|.|||.|..||..|..|++.|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5799999999999999999999999999998653
No 339
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.75 E-value=0.025 Score=54.04 Aligned_cols=63 Identities=22% Similarity=0.209 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~l~~ll~ 336 (536)
.-|.+.-.+.+++.||.++-|..|.++.....+ + .+.+.||.+++.|.||+|+|-..-..|..
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l-~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-L-VLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhhccc-e-EEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 344455556677789999999999999875443 3 38899999999999999998866555543
No 340
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.75 E-value=0.2 Score=48.30 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC-CceEEEecCCc
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g-~~V~vlE~~~~ 91 (536)
....|+|.||-|++-|+-|..|...+ .+++.||+...
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 35689999999999999999999874 78999998754
No 341
>PRK06370 mercuric reductase; Validated
Probab=95.70 E-value=0.022 Score=58.32 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=32.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 359999999999999999999999999999987653
No 342
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.015 Score=59.52 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=30.9
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.|+|||.|.+|+++|+.|.+.|++|++.|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998754
No 343
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.52 E-value=0.021 Score=58.06 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 48999999999999999999999999999987653
No 344
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.02 Score=51.90 Aligned_cols=67 Identities=28% Similarity=0.510 Sum_probs=45.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHHHHHHHhCCCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (536)
++++|||+|-.|.+.|..|.+.|++|+++|+.+.. +..+. .-+.+.+.+.+... -.+.+++.|++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~---~~~~~-----~~~~~~~~v~gd~t-~~~~L~~agi~~a 67 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER---VEEFL-----ADELDTHVVIGDAT-DEDVLEEAGIDDA 67 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH---HHHHh-----hhhcceEEEEecCC-CHHHHHhcCCCcC
Confidence 57999999999999999999999999999987541 11100 00133444433222 2467788888753
No 345
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.38 E-value=0.019 Score=48.64 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 60 VvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
|+|||+|..|+..|+.|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998754
No 346
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.28 E-value=0.032 Score=57.15 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=33.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~G 93 (536)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 3599999999999999999999999999999987653
No 347
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.26 E-value=0.03 Score=48.27 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=29.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
+...|+|+|+|.+|..||..|...|.+|+++|.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4579999999999999999999999999999974
No 348
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.25 E-value=0.024 Score=54.39 Aligned_cols=33 Identities=42% Similarity=0.467 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
++|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999864
No 349
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.16 E-value=0.027 Score=57.65 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~G 93 (536)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 589999999999999999999999999999987643
No 350
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.06 E-value=0.033 Score=56.65 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~G 93 (536)
.+|+|||||.+|+-.|..|++.|.+|+|+|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 589999999999999999999999999999887653
No 351
>PRK12831 putative oxidoreductase; Provisional
Probab=95.06 E-value=0.054 Score=55.25 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
...+|+|||||.+|+-+|..|.+.|.+|+|++++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 4569999999999999999999999999999864
No 352
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.02 E-value=0.059 Score=54.83 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
...+|+|||||..|+-+|..|.+.|.+|+|++++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 4569999999999999999999999999999875
No 353
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.99 E-value=0.03 Score=50.10 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=29.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
+..+|+|||+|.++.-+|..|++.|.+|+++=+++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45799999999999999999999999999997764
No 354
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.98 E-value=0.038 Score=56.56 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 35899999999999999999999999999998544
No 355
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.87 E-value=0.033 Score=53.39 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
++|.|||+|..||+.|..|++.|++|+.+|-.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999754
No 356
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.82 E-value=0.036 Score=56.22 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~G 93 (536)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 589999999999999999999999999999887654
No 357
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.81 E-value=0.039 Score=56.47 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.+|+|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 5899999999999999999999999999998654
No 358
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.73 E-value=0.044 Score=56.17 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4899999999999999999999999999997543
No 359
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.73 E-value=0.054 Score=46.40 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=30.9
Q ss_pred CCCCeEEEECCCH-HHHHHHHHHHHCCCceEEEecC
Q 009372 55 SKPLKVVIAGAGL-AGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 55 ~~~~dVvIIGaGi-aGl~aA~~L~~~g~~V~vlE~~ 89 (536)
-..++|+|||+|- +|..+|..|.+.|.+|+++.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3567999999995 7999999999999999999864
No 360
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.72 E-value=0.046 Score=59.66 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=32.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 358999999999999999999999999999987764
No 361
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.67 E-value=0.054 Score=51.80 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
...|+|||+|..|..-|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999764
No 362
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.67 E-value=0.037 Score=50.98 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
-...+|+|||+|.+|.-+|.-+.-.|.+|+|+|.+
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 35569999999999999999999999999999987
No 363
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.64 E-value=0.056 Score=48.20 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
...|+|||||-+|...|..|.+.|.+|+|+..+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 458999999999999999999999999999764
No 364
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.59 E-value=0.079 Score=43.75 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc-eEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~-V~vlE~~ 89 (536)
+...|+|||+|-+|-++++.|.+.|.+ |+|+-|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567999999999999999999999986 9999764
No 365
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.57 E-value=0.027 Score=50.53 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCceEEEecCCc
Q 009372 60 VVIAGAGLAGLSTAKYLADA--GHKPLLLEARDV 91 (536)
Q Consensus 60 VvIIGaGiaGl~aA~~L~~~--g~~V~vlE~~~~ 91 (536)
.+||||||||.+||-.|+.. ..+|+|+-+...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 58999999999999999986 458999877644
No 366
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.57 E-value=0.049 Score=55.61 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.+.|+|||+|.+|+.+|..|++.|++|+++|...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999864
No 367
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.44 E-value=0.066 Score=51.58 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
..++|+|||+|..|.+-|..|++.|++|+++.++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3468999999999999999999999999999875
No 368
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.39 E-value=0.056 Score=51.13 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
..|.|||+|..|...|..|++.|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999997643
No 369
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.38 E-value=0.04 Score=43.05 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
+...|+|||+|-.|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4568999999999999999999999999999876
No 370
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.30 E-value=0.057 Score=51.26 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..|+|||+|..|.+.|..|++.|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999753
No 371
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.21 E-value=0.061 Score=51.09 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.+|+|||+|..|...|..|++.|++|+++|.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 369999999999999999999999999999764
No 372
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.17 E-value=0.065 Score=55.56 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 4699999999999999999999999999998643
No 373
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.11 E-value=0.079 Score=53.99 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
..+|+|||||.+|+-+|..|.+.|.+|+++++.+++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 458999999999999999999999999999987653
No 374
>PTZ00058 glutathione reductase; Provisional
Probab=94.02 E-value=0.076 Score=55.28 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 45899999999999999999999999999998644
No 375
>PRK04148 hypothetical protein; Provisional
Probab=94.01 E-value=0.062 Score=43.65 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
..++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 999999999999999999997654
No 376
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.00 E-value=0.055 Score=50.02 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=32.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC-CC-ceEEEecCCc
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GH-KPLLLEARDV 91 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~-g~-~V~vlE~~~~ 91 (536)
.+.++.|+|||||.+|++.|..+.+. |. +|.|+|-.+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 35789999999999999999999876 54 8999997653
No 377
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.99 E-value=0.14 Score=53.60 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009372 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (536)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~---~~g~--~i~ad~VI~a~~~~~ 330 (536)
..++..|.+.+.+.|++|+++++|++|.. ++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 46888999999889999999999999997 4788888875 2454 578999999998754
No 378
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.96 E-value=0.098 Score=46.55 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
+.+.|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4569999999999999999999999999999753
No 379
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.94 E-value=0.085 Score=50.53 Aligned_cols=33 Identities=33% Similarity=0.226 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
.++|+|||+|..|...|+.|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999885
No 380
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.88 E-value=0.14 Score=55.93 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc-eEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~-V~vlE~~ 89 (536)
...+|||||||.+|+-+|..|.+.|.+ |+|++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 456899999999999999999999987 9999875
No 381
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.88 E-value=0.11 Score=44.15 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEe
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE 87 (536)
+...|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45689999999999999999999999999994
No 382
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.76 E-value=0.091 Score=50.31 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=29.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g--~~V~vlE~~~ 90 (536)
++|.|||+|..|.++|+.|+..| .+|+++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999998 4799999764
No 383
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.089 Score=50.13 Aligned_cols=32 Identities=38% Similarity=0.336 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
.+|.|||+|.-|...|..|++.|++|+++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47999999999999999999999999999975
No 384
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.73 E-value=0.088 Score=50.53 Aligned_cols=32 Identities=41% Similarity=0.532 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
++|+|||+|..|...|..|++.|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999874
No 385
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.72 E-value=0.1 Score=46.38 Aligned_cols=34 Identities=35% Similarity=0.404 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
...+|+|||+|-.|..+|..|++.|. +|+|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45689999999999999999999998 69999976
No 386
>PRK10262 thioredoxin reductase; Provisional
Probab=93.71 E-value=0.099 Score=50.62 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
...+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 34699999999999999999999999999999864
No 387
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.65 E-value=0.09 Score=57.59 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
..+++|||||..|+-+|..|++.|.+|+|+|..+.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 348999999999999999999999999999987764
No 388
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.57 E-value=0.098 Score=50.22 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~ 88 (536)
++|+|||+|..|...|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4799999999999999999999999999986
No 389
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.57 E-value=0.089 Score=43.48 Aligned_cols=35 Identities=40% Similarity=0.448 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~ 91 (536)
+.+|+|||+|-.|...|..|++.|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999998 7999997543
No 390
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.55 E-value=0.11 Score=51.18 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
...+|+|||+|.+|+.+|..|...|.+|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4567999999999999999999999999999875
No 391
>PRK06116 glutathione reductase; Validated
Probab=93.54 E-value=0.11 Score=53.09 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=32.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 358999999999999999999999999999987653
No 392
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.53 E-value=0.099 Score=54.75 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
...+|+|||||.+|+-.|..|++.|.+|+|+++.+.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 356999999999999999999999999999998765
No 393
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.49 E-value=0.11 Score=50.95 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCc-eEEEecC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~-V~vlE~~ 89 (536)
...|+|||+|..|+-+|..|.+.|.+ |+|++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 45899999999999999999999987 9999864
No 394
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.46 E-value=0.13 Score=49.22 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=29.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
++|.|||+|..|...|+.|+..|. +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999876 89999974
No 395
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.44 E-value=0.11 Score=54.05 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
...+|+|||||.+|+-+|..|++.+.+|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999999999999998653
No 396
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.39 E-value=0.12 Score=52.46 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=32.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 48999999999999999999999999999987654
No 397
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.37 E-value=0.11 Score=50.76 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=30.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
++|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999874
No 398
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.37 E-value=0.1 Score=49.65 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..|.|||+|..|...|..|++.|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999754
No 399
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.21 E-value=0.13 Score=48.80 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999753
No 400
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.12 E-value=0.11 Score=45.61 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=34.6
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 53 ~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.......|.|||||.-|.-.|..-+..|++|.+++++..
T Consensus 7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 7 NMAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 445677999999999999999999999999999998644
No 401
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.05 E-value=0.14 Score=48.86 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
...+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 3469999999999999999999999999999874
No 402
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.02 E-value=0.15 Score=52.60 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 38999999999999999999999999999864
No 403
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.99 E-value=0.19 Score=41.74 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=29.5
Q ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecCC
Q 009372 58 LKVVIAGA-GLAGLSTAKYLADAGH--KPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGa-GiaGl~aA~~L~~~g~--~V~vlE~~~ 90 (536)
++|.|||+ |-.|.+.|+.|...+. +++|+|.++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999865 799999863
No 404
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.93 E-value=0.13 Score=52.55 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
...|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 45799999999999999999999999999997543
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.88 E-value=0.13 Score=51.52 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.++|.|||.|..|+..|..|++.|++|+++|.+..
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 35799999999999999999999999999997543
No 406
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.86 E-value=0.12 Score=51.88 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
++|.|||.|..|+..|..|++.|++|++++.+..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 3699999999999999999999999999998653
No 407
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.82 E-value=0.18 Score=45.80 Aligned_cols=34 Identities=35% Similarity=0.672 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~---~V~vlE~~ 89 (536)
++.+|+|+|+|-+|..+|..|.+.|. +|.|+++.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 45689999999999999999999997 49999986
No 408
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.81 E-value=0.12 Score=51.35 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=33.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
.+.|+|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 679999999999999999999999999999976554
No 409
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.80 E-value=0.18 Score=48.37 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..++|.|||+|.-|.+.|..|++.|++|+++.++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34689999999999999999999999999999864
No 410
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.76 E-value=0.17 Score=48.65 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..+|.|||+|..|.+.|..|++.|++|++++.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999653
No 411
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.75 E-value=0.15 Score=49.60 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CceEEEecC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g-~~V~vlE~~ 89 (536)
+++|+|||||-.|.++|+.|++.| .+|+|.++.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999998 799999987
No 412
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.72 E-value=0.18 Score=43.30 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
+++|.|||-|..|...|..|.+.|++|.++++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 3689999999999999999999999999999763
No 413
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.71 E-value=0.17 Score=48.26 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999753
No 414
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.59 E-value=0.16 Score=49.29 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=30.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
++|.|||+|..|...|..|++.|++|++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 57999999999999999999999999999875
No 415
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.58 E-value=0.2 Score=47.88 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC--ceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~--~V~vlE~~~ 90 (536)
+..+|+|||+|-.|.++|+.|+..|. +++|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45699999999999999999998876 799999754
No 416
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.57 E-value=0.2 Score=48.67 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.++|.|||+|.-|...|..|++.|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4589999999999999999999999999998853
No 417
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.12 Score=48.45 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
+-+.+||+|||||-+|+-||.-|+---..|++||=.
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 456789999999999999999999665589999943
No 418
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.52 E-value=0.16 Score=51.76 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
..+|+|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3479999999999999999999999999999764
No 419
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.52 E-value=0.2 Score=46.51 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~ 90 (536)
....|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45689999999999999999999995 899999753
No 420
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.52 E-value=0.17 Score=51.56 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=31.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
....+|+|||+|.+|+.|+..+...|.+|+++|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34679999999999999999999999999999864
No 421
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.26 E-value=0.2 Score=48.63 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
++|.|||+|.-|.+-|..|++.|++|+++.++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 36999999999999999999999999999874
No 422
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.18 E-value=0.37 Score=36.08 Aligned_cols=33 Identities=45% Similarity=0.578 Sum_probs=29.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCceEEEec
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEA 88 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~-g~~V~vlE~ 88 (536)
...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 456899999999999999999998 578999987
No 423
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.17 E-value=0.19 Score=50.99 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g--~~V~vlE~~~ 90 (536)
+++|.|||+|..|+..|..|++.| ++|+.+|.+.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 468999999999999999999984 7899998754
No 424
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.17 E-value=0.22 Score=39.75 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 60 VvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
|+|||.|-.|...|..|.+.+.+|+++|.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998779999998754
No 425
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.13 E-value=0.22 Score=50.90 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
...+|+|||+|.+|+-+|..|.+.|. +|+|++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 45699999999999999999999998 89999864
No 426
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.04 E-value=0.12 Score=50.82 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=42.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC-------------CCceEEEecCCccCceeeeeccCCCCeeeeceeeeccCcchHH
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADA-------------GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQ 122 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~-------------g~~V~vlE~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~ 122 (536)
...+|+|||||++|.-.|-+|++. ..+|+|+|+.+++--.... .......
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~-----------------~l~~~a~ 216 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPP-----------------KLSKYAE 216 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCH-----------------HHHHHHH
Confidence 446899999999999999999863 1388999987764332211 1123466
Q ss_pred HHHHHhCCCCc
Q 009372 123 NLFGELGINDR 133 (536)
Q Consensus 123 ~l~~~lg~~~~ 133 (536)
+.++++|++..
T Consensus 217 ~~L~~~GV~v~ 227 (405)
T COG1252 217 RALEKLGVEVL 227 (405)
T ss_pred HHHHHCCCEEE
Confidence 78888887753
No 427
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.04 E-value=0.27 Score=43.73 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
+.+.|+|+|.|-.|..+|..|.+.|.+|++.|.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999999999999999999999999999865
No 428
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.04 E-value=0.21 Score=51.36 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
...|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999999999999999999999999999964
No 429
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.92 E-value=0.23 Score=50.16 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHH--------------CCCceEEEecCCcc
Q 009372 58 LKVVIAGAGLAGLSTAKYLAD--------------AGHKPLLLEARDVL 92 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~--------------~g~~V~vlE~~~~~ 92 (536)
.+|+|||||.+|+-.|..|++ .+.+|+|+|+.+.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 489999999999999999985 36899999987654
No 430
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.89 E-value=0.21 Score=51.07 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=32.7
Q ss_pred CCCCCeEEEECCCHHHHH-HHHHHHHCCCceEEEecCCc
Q 009372 54 PSKPLKVVIAGAGLAGLS-TAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~-aA~~L~~~g~~V~vlE~~~~ 91 (536)
..+.+.|.|||.|-+|++ +|..|.+.|++|++.|.+..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 345568999999999999 59999999999999997543
No 431
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.88 E-value=0.25 Score=46.62 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
+..+|+|||+|-+|-++|+.|++.|. +|+|+++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34689999999999999999999997 79999875
No 432
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.79 E-value=0.27 Score=44.10 Aligned_cols=35 Identities=40% Similarity=0.340 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~ 90 (536)
+..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45689999999999999999999998 599999753
No 433
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.77 E-value=0.25 Score=50.28 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
.+.|+|+|.|-+|+++|..|++.|++|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35899999999999999999999999999997543
No 434
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.76 E-value=0.23 Score=50.65 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
...|+|+|+|-+|+++|..|++.|.+|++.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999998653
No 435
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.63 E-value=0.29 Score=47.01 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~ 90 (536)
+++|+|||+|..|.+.|+.|+..|. +|+++|.+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 4689999999999999999999875 999999743
No 436
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.60 E-value=0.28 Score=42.45 Aligned_cols=32 Identities=41% Similarity=0.380 Sum_probs=29.1
Q ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEecCC
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~ 90 (536)
+|+|||+|-.|...|..|++.|. +++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 599999853
No 437
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.60 E-value=0.26 Score=47.68 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~ 90 (536)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999999999999999999998 899999864
No 438
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.47 E-value=0.27 Score=50.47 Aligned_cols=34 Identities=38% Similarity=0.572 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
-..|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4579999999999999999999999999999764
No 439
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.41 E-value=0.24 Score=48.96 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=28.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
++|.|||.|..|+..|..|+. |++|+++|.+..
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 369999999999999988875 999999998643
No 440
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.30 E-value=0.33 Score=46.12 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
...+|+|||.|.+|..+|..|...|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45799999999999999999999999999998864
No 441
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.25 E-value=0.34 Score=43.18 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
....|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45699999999999999999999998 89999874
No 442
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.21 E-value=0.32 Score=47.17 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~ 90 (536)
...+|+|||+|-.|..+|..|++.|. +|+|+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999999999999999998 899999853
No 443
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.19 E-value=0.33 Score=44.54 Aligned_cols=36 Identities=39% Similarity=0.545 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~ 91 (536)
+..+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 35689999999999999999999997 7999987543
No 444
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.19 E-value=0.35 Score=46.51 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~ 91 (536)
..+|+|||+|..|.+.|+.|+..|+ +|+|+|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999999996 8999997654
No 445
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=91.17 E-value=0.096 Score=50.64 Aligned_cols=34 Identities=35% Similarity=0.464 Sum_probs=0.0
Q ss_pred eEEEECCCHHHHHHHHHHH--------------HCCCceEEEecCCcc
Q 009372 59 KVVIAGAGLAGLSTAKYLA--------------DAGHKPLLLEARDVL 92 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~--------------~~g~~V~vlE~~~~~ 92 (536)
++||||||++|.-.|.+|+ +.-.+|+++||.+.+
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
No 446
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.17 E-value=0.33 Score=48.08 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
....|+|+|+|..|+.+|..|...|.+|+++|..+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45699999999999999999999999999998764
No 447
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=91.14 E-value=0.45 Score=46.91 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=45.5
Q ss_pred CCceeeeccCCCCCcccccchhhhhhhcCCCCCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCcc
Q 009372 18 CPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~ 92 (536)
++..+++++.... +...+.+..... .-.........|++||+|..|+-+|..|...+.+|++++..+.+
T Consensus 180 ~~~~l~~pG~~~~---nv~~ireieda~---~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~ 248 (478)
T KOG1336|consen 180 SAKTLDIPGVELK---NVFYLREIEDAN---RLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL 248 (478)
T ss_pred ccccCCCCCcccc---ceeeeccHHHHH---HHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccc
Confidence 6667777776533 333333322111 00011223668999999999999999999999999999987653
No 448
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.12 E-value=0.27 Score=50.59 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
++|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999998753
No 449
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.10 E-value=0.3 Score=49.60 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
+..+|+|||+|..|+.++..+...|.+|+++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4579999999999999999999999999999875
No 450
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.05 E-value=0.31 Score=50.15 Aligned_cols=35 Identities=40% Similarity=0.509 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
-..|.|||+|.-|...|..|++.|++|+++|.+..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999997653
No 451
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.01 E-value=0.27 Score=50.02 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
...|+|+|.|.+|.++|..|.+ |.+|++.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3579999999999999999995 9999999954
No 452
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.01 E-value=0.36 Score=44.44 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
...+|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45699999999999999999999997 79999875
No 453
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.93 E-value=0.31 Score=49.90 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
...|+|+|.|.+|+++|..|.+.|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 457999999999999999999999999999964
No 454
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.72 E-value=0.3 Score=46.16 Aligned_cols=32 Identities=34% Similarity=0.408 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
++|.|||.|..|.+.|..|.+.|++|++++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 36999999999999999999999999999875
No 455
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.69 E-value=0.37 Score=46.16 Aligned_cols=32 Identities=41% Similarity=0.578 Sum_probs=29.0
Q ss_pred eEEEECCCHHHHHHHHHHHHCC--CceEEEecCC
Q 009372 59 KVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g--~~V~vlE~~~ 90 (536)
+|+|||+|-.|.+.|+.|+..| .+|+++|.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999998 4799999854
No 456
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.69 E-value=0.63 Score=47.71 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 009372 479 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 520 (536)
Q Consensus 479 ~~p~~~l~~aG~~~~~~~~~~i~gA~~SG~~aA~~ll~~l~~ 520 (536)
.+..++||.+||.+.+. ..+..|+..|..||..|...|..
T Consensus 427 ~Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 427 QTSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred cCCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999988753 46788999999999999888753
No 457
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.62 E-value=0.4 Score=39.99 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=29.6
Q ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCc
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~ 91 (536)
+|+|||+|-.|...|..|++.|. +++|+|....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 7999997543
No 458
>PRK08328 hypothetical protein; Provisional
Probab=90.61 E-value=0.39 Score=43.80 Aligned_cols=34 Identities=41% Similarity=0.591 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
....|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35689999999999999999999997 79999864
No 459
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.57 E-value=0.45 Score=42.13 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.2
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGa-GiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
+..+++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999997 999999999999999999999754
No 460
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.54 E-value=0.47 Score=48.04 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=33.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.-..++|+|||+|.||...|-+|++.|.+|+++-++.
T Consensus 172 ~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 172 DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 3456899999999999999999999999999997754
No 461
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.53 E-value=0.4 Score=43.68 Aligned_cols=34 Identities=41% Similarity=0.556 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35699999999999999999999998 79999875
No 462
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.50 E-value=0.41 Score=43.37 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.5
Q ss_pred CeEEEEC-CCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAG-AGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIG-aGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
++|.||| +|.-|.+.|..|++.|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4699997 7999999999999999999998654
No 463
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.48 E-value=0.37 Score=51.98 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
-..|+|||||..|...|..++..|++|+++|.++.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999997643
No 464
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.46 E-value=0.4 Score=45.31 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
....|+|||.|-.|.+.|..|...|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999998864
No 465
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.37 E-value=0.34 Score=46.29 Aligned_cols=32 Identities=41% Similarity=0.535 Sum_probs=28.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
++|.|+|+|..|...|+.|++.|..|+++=+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~ 32 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRS 32 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecH
Confidence 47999999999999999999999777777554
No 466
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.19 E-value=0.41 Score=51.54 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
+-..|.|||||..|...|..++..|++|+++|.+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 445799999999999999999999999999997643
No 467
>PLN02256 arogenate dehydrogenase
Probab=90.17 E-value=0.95 Score=43.18 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
..++|.|||.|..|-+.|..|.+.|.+|++++.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 5568999999999999999999999999988865
No 468
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.16 E-value=0.38 Score=45.43 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
-..|.|||||.-|-..|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 358999999999999999999988999999986
No 469
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.14 E-value=0.4 Score=53.25 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
...+|+|||||.+|+-+|..+.+.|.+|+++.++.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 45799999999999999999999999999998764
No 470
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.11 E-value=0.35 Score=49.18 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=31.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
-+..+|+|||+|.+|+-.|..|++.+.+|+++.++
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 35679999999999999999999999999998764
No 471
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=90.06 E-value=0.48 Score=46.02 Aligned_cols=36 Identities=36% Similarity=0.568 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC---ceEEEecCC
Q 009372 55 SKPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEARD 90 (536)
Q Consensus 55 ~~~~dVvIIGaGiaGl~aA~~L~~~g~---~V~vlE~~~ 90 (536)
-++.+|+|.|||.||+++|..|...|. +|.++|+..
T Consensus 197 l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G 235 (432)
T COG0281 197 LKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKG 235 (432)
T ss_pred ccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCC
Confidence 356799999999999999999999987 799999863
No 472
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.99 E-value=0.54 Score=42.22 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=29.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEe
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE 87 (536)
+...|+|||||-.++.=+..|.+.|.+|+|+-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 56789999999999999999999999999994
No 473
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.99 E-value=0.4 Score=49.57 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 57 ~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
...|.|||.|.+|+++|..|.+.|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 474
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.98 E-value=0.53 Score=45.18 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC--ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~--~V~vlE~~ 89 (536)
...+|+|||+|-.|.++|+.|+..|. +++|+|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 34599999999999999999999887 79999974
No 475
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.91 E-value=0.21 Score=40.46 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=29.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 54 ~~~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.....+|.|||+|-.|.+-|..|.+.|+.|+-+..+.
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4467799999999999999999999999998776543
No 476
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.80 E-value=0.52 Score=44.27 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~ 89 (536)
....++|+|+|-+|.++|+.|++.|.+|+++.+.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4568999999999999999999999999999764
No 477
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.69 E-value=0.47 Score=45.27 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=27.9
Q ss_pred eEEEECCCHHHHHHHHHHHHCCC--ceEEEecC
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~--~V~vlE~~ 89 (536)
+|+|||+|-.|.++|+.|+..+. +++|+|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 48999999999999999999876 69999974
No 478
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.68 E-value=0.61 Score=44.23 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc-eEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~-V~vlE~~ 89 (536)
+.+.++|+|||=+|.++|+.|++.|.+ |+|+.++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 346899999999999999999999986 9999875
No 479
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.49 E-value=0.42 Score=45.69 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-ceEEEecCC
Q 009372 60 VVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (536)
Q Consensus 60 VvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~ 90 (536)
|.|||+|..|...|+.|+..|. +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999998876 999999863
No 480
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=89.49 E-value=0.42 Score=39.34 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 60 VvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
++|+|+|..+.+.|..+...|++|+|+|-++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999764
No 481
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.42 E-value=0.22 Score=47.50 Aligned_cols=40 Identities=30% Similarity=0.494 Sum_probs=35.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCccCce
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~~GG~ 95 (536)
-....+|||||+.||-.+-.-.+.|.+||++|..+.+||.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 3458999999999999999999999999999998887765
No 482
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.41 E-value=0.61 Score=44.91 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g-~~V~vlE~~~ 90 (536)
+.++|+|||||..|.+.|+.|+..| ..|+|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4569999999999999999999988 5899999754
No 483
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=89.40 E-value=0.51 Score=49.19 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=38.6
Q ss_pred HHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 282 l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
.+++|++++++.+|++|.. +.+. |+++.|.++.+|++|+||+.+.
T Consensus 69 y~~~~i~L~~~~~v~~idr--~~k~--V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 69 YEENGITLYTGEKVIQIDR--ANKV--VTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred HHHcCcEEEcCCeeEEecc--Ccce--EEccCCcEeecceeEEecCccc
Confidence 3568999999999999986 3443 8889999999999999999875
No 484
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.16 E-value=0.49 Score=48.31 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 58 ~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
++|+|||+|..|...|..|.+.|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999998543
No 485
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.07 E-value=0.57 Score=50.63 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
+-..|.|||||..|...|+.++..|++|+++|.++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 34579999999999999999999999999999764
No 486
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=89.06 E-value=0.61 Score=41.36 Aligned_cols=36 Identities=39% Similarity=0.460 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~ 91 (536)
...+|+|||+|-.|..+|..|+..|. +++|+|....
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 35699999999999999999999998 6999997543
No 487
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.04 E-value=0.74 Score=38.93 Aligned_cols=34 Identities=38% Similarity=0.419 Sum_probs=29.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g-~~V~vlE~~ 89 (536)
+..+|+|||+|..|.+.|..|++.| .+|++++++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3568999999999999999999986 789999875
No 488
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=89.02 E-value=0.45 Score=46.98 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHHcCcEEEeCcceEEEEEcCCCCEEEEEEcCCcEEEcCEEEEccCHHH
Q 009372 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (536)
Q Consensus 278 l~~~l~~~G~~i~~~~~V~~I~~~~~g~~~~v~~~~g~~i~ad~VI~a~~~~~ 330 (536)
+.+.+++.|+++..+ .|++|..+ ++. |.+.+|+++.+|++|+|||...
T Consensus 60 ~~~~~~~~gv~~~~~-~v~~id~~--~~~--V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 60 LRRLARQAGARFVIA-EATGIDPD--RRK--VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHHhcCCEEEEE-EEEEEecc--cCE--EEECCCCcccccEEEEccCCCC
Confidence 345556678998765 79999863 333 7788888899999999999864
No 489
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.91 E-value=0.64 Score=42.23 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~ 91 (536)
....|+|||.|-.|..+|..|++.|. +++|+|....
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 35689999999999999999999998 8999997543
No 490
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.87 E-value=0.65 Score=45.90 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
....|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 45699999999999999999999999999999754
No 491
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.86 E-value=0.63 Score=41.25 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
....|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35689999999999999999999998 69999875
No 492
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.73 E-value=0.66 Score=49.63 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~ 90 (536)
...+|+|||+|.+|+-+|..|.+.|. +|+|++++.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45699999999999999999999986 699998764
No 493
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.62 E-value=0.67 Score=39.06 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=28.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~~ 91 (536)
..+.++|+|=|..|-.+|..|...|.+|+|.|..+.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 456899999999999999999999999999998654
No 494
>PRK08223 hypothetical protein; Validated
Probab=88.58 E-value=0.67 Score=43.30 Aligned_cols=36 Identities=28% Similarity=0.198 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecCCc
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~~~ 91 (536)
+...|+|||+|-.|..+|..|+..|. +++|+|....
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 45699999999999999999999998 7999997543
No 495
>PRK06153 hypothetical protein; Provisional
Probab=88.56 E-value=0.37 Score=46.72 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-ceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~-~V~vlE~~ 89 (536)
+..+|+|||+|=.|..+|..|++.|. +++|+|..
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 45699999999999999999999997 79999975
No 496
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.55 E-value=0.79 Score=43.73 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=29.1
Q ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecC
Q 009372 58 LKVVIAGA-GLAGLSTAKYLADAGH--KPLLLEAR 89 (536)
Q Consensus 58 ~dVvIIGa-GiaGl~aA~~L~~~g~--~V~vlE~~ 89 (536)
++|+|||+ |-.|.++|+.|+..+. +++|+|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 47999999 9999999999998875 79999987
No 497
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.52 E-value=0.74 Score=43.42 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CceEEEecC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g-~~V~vlE~~ 89 (536)
....|+|+|+|-+|.++|+.|++.| .+|+|+.+.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4568999999999999999999999 689999875
No 498
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.44 E-value=0.67 Score=47.24 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
.+--|+|||.|-+|+++|..|.+.|++|++.|.+.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 44579999999999999999999999999999754
No 499
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=88.42 E-value=0.51 Score=44.92 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecCC
Q 009372 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (536)
Q Consensus 59 dVvIIGaGiaGl~aA~~L~~~g~~V~vlE~~~ 90 (536)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998753
No 500
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.42 E-value=0.89 Score=49.09 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHH-HCCCceEEEecCC
Q 009372 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (536)
Q Consensus 56 ~~~dVvIIGaGiaGl~aA~~L~-~~g~~V~vlE~~~ 90 (536)
.-..|.|||||..|...|..++ ..|++|+++|.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3467999999999999999999 8899999999753
Done!