BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009373
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 17/213 (7%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 210
I LYGHT V + + K + + D+ +R+W +E G + +R V D
Sbjct: 192 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
+ +V+G D + W E + L H + SL D + SGS
Sbjct: 250 RRVVSGAYDFMVKVW-------------DPETETCLHTLQGHTNRVYSLQFDGIHVVSGS 296
Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCLLTVVN 328
D ++RVWD C+ L H G+ D V+ + S V IWD +G L +
Sbjct: 297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Query: 329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
G + + +F+ T +DG + ++++
Sbjct: 357 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/420 (20%), Positives = 163/420 (38%), Gaps = 54/420 (12%)
Query: 58 NLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGL--P 115
R I+ LP L +L+ L+PK+L + LA D+ W+E C+ G+ P
Sbjct: 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE-KCKEEGIDEP 71
Query: 116 IA---SAPLGAGFSDDKSWKELFVEREFRSKTFLGR---YSIDVLYGHTEAVLTVFVLAS 169
+ + GF WK ++ R+ R T R S VL GH + V+T
Sbjct: 72 LHIKRRKVIKPGFIH-SPWKSAYI-RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 129
Query: 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE 229
+++ S D+ +++W G + + + + ++++G TD + W A
Sbjct: 130 NRIVSGSD-DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA-- 186
Query: 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL 289
E L+ H + + L R+ SGS D T+RVWD +CL VL
Sbjct: 187 -----------ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235
Query: 290 RHSDWVYGLAPHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL 347
+D + D V +WD + L + G H SL G +
Sbjct: 236 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSL--QFDGIHV 292
Query: 348 FTGGEDGAIHMYEI-INDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 406
+G D +I ++++ +C + T H + + + LVS D + + D
Sbjct: 293 VSGSLDTSIRVWDVETGNC-------IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD 345
Query: 407 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 466
++ +G+ + ++ P + C + + ++ ++G V++W+
Sbjct: 346 IK---------TGQCLQ---TLQGPNKHQSAVTC----LQFNKNFVITSSDDGTVKLWDL 389
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 100 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 143
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 204 QCLKTLID 211
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 229
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 290 TKEIVQKLQG 299
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 102 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 145
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 206 QCLKTLID 213
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 231
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 292 TKEIVQKLQG 301
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 31/240 (12%)
Query: 256 ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD-- 312
+ L D +I SG D T+++WD+ L+C ++L H+ V L +D V T SD
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ-YDERVIITGSSDST 194
Query: 313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 372
V +WD N+G +L + H R + G + T +D +I ++++ + ++ L
Sbjct: 195 VRVWDVNTGEMLNTL--IHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDM---ASPTDITL 248
Query: 373 VATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID------VRKL-----------LRSGR 415
+ H VN + F+ ++VSA+GD + + + VR L R
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 308
Query: 416 PTSGKRVSRV----IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 471
SG + + IE R+L G E + + RIV G +G +++W+ A +
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 368
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV 230
+L+ + D+ +R+W +E G + + +R + D K +V+G DG I W V
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 366
Query: 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWD 279
L D L EH G + L D +I S S D T+ +WD
Sbjct: 367 L----DPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 411
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 81 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 185 QCLKTLID 192
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNGKY---------I 210
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 271 TKEIVQKLQG 280
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 31/205 (15%)
Query: 139 EFRSKT--FLGRYSID-VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SI 193
EF+SK Y++ L GHT+AV +V + + L +S D ++++W DG
Sbjct: 7 EFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 194 ASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFR 248
S LG + A ++D LLV+ D + W D+S + K ++ +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYV 116
Query: 249 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVA 306
+ P ++L I SGS+D +VR+WD KCLK L HSD V + D ++
Sbjct: 117 FCCNFNPQSNL------IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Query: 307 STSGSD--VYIWDTNSG-CLLTVVN 328
+S D IWDT SG CL T+++
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLID 195
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 213
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 274 TKEIVQKLQG 283
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 81 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 185 QCLKTLID 192
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 28/228 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNGKY---------I 210
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Query: 320 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMYEIINDC 365
+ ++ + G H S A T + + + D I +Y+ +DC
Sbjct: 271 TKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLYK--SDC 315
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 95 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 138
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 199 QCLKTLID 206
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNGKY---------I 224
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 284
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 285 TKEIVQKLQG 294
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 84 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 188 QCLKTLID 195
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 213
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWD 317
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 83 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 126
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 187 QCLKTLID 194
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 212
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWD 317
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 78 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 121
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 182 QCLKTLID 189
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 207
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 268 TKEIVQKLQG 277
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 78 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 121
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 182 QCLKTLID 189
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 207
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 268 TKEIVQKLQG 277
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 84 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 188 QCLKTLID 195
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 213
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWD 317
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 79 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 122
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 183 QCLKTLID 190
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 208
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWD 317
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 77 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 120
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 181 QCLKTLID 188
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 206
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWD 317
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 74 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 117
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 178 QCLKTLID 185
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 203
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 264 TKEIVQKLQG 273
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L S D ++++W DG S LG + A ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 81 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 185 QCLKTLID 192
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNGKY---------I 210
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 271 TKEIVQKLQG 280
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 81 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD CLK L HSD V + D ++ +S D IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 185 QCLKTLID 192
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 23/190 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 210
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWDTN 319
+ + D +++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 320 SGCLLTVVNG 329
+ ++ + G
Sbjct: 271 TKEIVQKLQG 280
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 81 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
I SGS+D +VR+WD CLK L HSD V + D ++ +S D IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
CL T+++
Sbjct: 185 QCLKTLID 192
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AA 208
+ L GH+ V + L+ + +D VR+W ++ G + + + AV
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 209 DKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
D L+V+ DG W + L L D + F + G I
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNG---------KYI 210
Query: 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS---TSGSD---VYIWD 317
+ + D T+++WD + KCLK H + Y + + + SGS+ VYIW+
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 36/241 (14%)
Query: 145 FLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR 204
F G I ++GH V +V ++ + + ++ D ++MW ++ G+ + + +R
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 205 AV--AADKKLLVAGGTDGFIHCW---------------RAVEVL---PHLFDISGSEKQN 244
V D L+ + D + W VE + P S SE
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298
Query: 245 TQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPHDT 303
++ + GP + SGS D T+++WD + CL L H +WV G+ H
Sbjct: 299 SETKKSGKPGPF---------LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 349
Query: 304 TVASTSGSD---VYIWD-TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 359
S +D + +WD N C+ T+ AH SL T ++ TG D + ++
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTL--NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Query: 360 E 360
E
Sbjct: 408 E 408
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 113/284 (39%), Gaps = 48/284 (16%)
Query: 154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK--K 211
L GH V V ++ ++ D+ +++W E G + K +++ ++ D K
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 269
LL + D I W D G E T + H+ ++S+++ + I S
Sbjct: 164 LLASCSADMTIKLW----------DFQGFECIRT---MHGHDHNVSSVSIMPNGDHIVSA 210
Query: 270 SWDMTVRVWDRALLKCLKVLR-HSDWVYGLAP-HDTTVASTSGSD--VYIWDTNSG-CLL 324
S D T+++W+ C+K H +WV + P D T+ ++ +D V +W + C
Sbjct: 211 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270
Query: 325 TVVNGAHVGNTKSLARSHT------------------GDFLFTGGEDGAIHMYEIINDCT 366
+ HV S A + G FL +G D I M+++
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV----- 325
Query: 367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 408
+ + + T + H V + F +++S A D L + D +
Sbjct: 326 -STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 48/285 (16%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADK 210
L GHT++V + S KLL + D +++W + I + + +V+ +
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
+V+ D I W K T R W + D T I S S
Sbjct: 205 DHIVSASRDKTIKMWEV--------QTGYCVKTFTGHREWVR---MVRPNQDGTLIASCS 253
Query: 271 WDMTVRVWDRALLKC---LKVLRHSDWVYGLAPHD--TTVASTSGSD------------- 312
D TVRVW A +C L+ RH AP ++++ +GS+
Sbjct: 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313
Query: 313 ------VYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 365
+ +WD ++G CL+T+V H + + G F+ + +D + +++
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDY---- 367
Query: 366 TEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR 408
N + T H V SL F P++V+ + D + + + R
Sbjct: 368 --KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 27/210 (12%)
Query: 168 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV----AADKKLLVAGGTDGFIH 223
A +L + D VR+W ++ G + T+R + + K +V G D +H
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 224 CWRAVEV-----------LPHLFDISGSEKQNTQFR--LWEHEGPITSLALDLTRIYSGS 270
W+ + P +F + ++N F L H + +++ + SGS
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFH---TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287
Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYG-LAPHDTT--VASTSGSDVYIWDTNSGCLLTV 326
+D T+ VWD A +KCL +L H+D +Y + H+ ++++ + + IWD +G L+
Sbjct: 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356
+ G H L S FL + DG+I
Sbjct: 348 LQG-HTALVGLLRLS--DKFLVSAAADGSI 374
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 212
+L GHT+ + + K ++ D+ +R+W LE+G + + + + + K
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 213 LVAGGTDGFIHCWRA 227
LV+ DG I W A
Sbjct: 365 LVSAAADGSIRGWDA 379
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 29/244 (11%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A 208
+ L GH+ +V V + + ++ D V++W+ +G + + ++R VA
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 209 DKKLLVAGGTDGFIHCW-RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY 267
D + + + D + W R ++L L S S +W + + D I
Sbjct: 109 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS--------VWG-----VAFSPDGQTIA 155
Query: 268 SGSWDMTVRVWDR--ALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD-VYIWDTNSGCLL 324
S S D TV++W+R LL+ L S W +P T+AS S V +W+ N G LL
Sbjct: 156 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 214
Query: 325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 384
+ G H + + +A S G + + +D + ++ N L+ T H+ VN
Sbjct: 215 QTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLW-------NRNGQLLQTLTGHSSSVN 266
Query: 385 SLAF 388
+AF
Sbjct: 267 GVAF 270
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMW-----HLEDGFSIASSKPLGCTIRA 205
+ L GH+ +V V + + ++ D V++W HL+ + SS G A
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGV---A 351
Query: 206 VAADKKLLVAGGTDGFIHCW-RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLT 264
+ D + + + D + W R ++L L S S + + + D
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG-------------VAFSPDGQ 398
Query: 265 RIYSGSWDMTVRVWDR--ALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD-VYIWDTNSG 321
I S S D TV++W+R LL+ L S W +P D T+AS S V +W+ N G
Sbjct: 399 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-G 457
Query: 322 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381
LL + G H + + +A S G + + +D + ++ N L+ T H+
Sbjct: 458 QLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLW-------NRNGQLLQTLTGHSS 509
Query: 382 PVNSLAFE 389
V +AF
Sbjct: 510 SVRGVAFS 517
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 44/273 (16%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A 208
+ L GH+ +V V + + ++ D V++W+ +G + + ++R VA
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 209 DKKLLVAGGTDGFIHCW-RAVEVLP----HLFDISG-----------SEKQNTQFRLWEH 252
D + + + D + W R ++L H ++G S + +LW
Sbjct: 232 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 253 EGPI-------------TSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA 299
G + + + D I S S D TV++W+R + HS V+G+A
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVA 351
Query: 300 --PHDTTVASTSGSD-VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356
P T+AS S V +W+ N G LL + G H + + +A S G + + +D +
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFE 389
++ N L+ T H+ V +AF
Sbjct: 410 KLW-------NRNGQLLQTLTGHSSSVWGVAFS 435
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 248 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR--ALLKCLKVLRHSDWVYGLAPHDT 303
RL H + +A D I S S D TV++W+R LL+ L S W +P
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 304 TVASTSGSD-VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII 362
T+AS S V +W+ N G LL + G H + + +A S G + + +D + ++
Sbjct: 71 TIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLW--- 125
Query: 363 NDCTEANVLLVATWIPHTGPVNSLAFE 389
N L+ T H+ V +AF
Sbjct: 126 ----NRNGQLLQTLTGHSSSVWGVAFS 148
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 27/210 (12%)
Query: 168 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV----AADKKLLVAGGTDGFIH 223
A +L + D VR+W ++ G + T+R + + K +V G D +H
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 224 CWRAVEV-----------LPHLFDISGSEKQNTQFR--LWEHEGPITSLALDLTRIYSGS 270
W+ + P +F + ++N F L H + +++ + SGS
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFH---TPEENPYFVGVLRGHXASVRTVSGHGNIVVSGS 287
Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYG-LAPHDTT--VASTSGSDVYIWDTNSGCLLTV 326
+D T+ VWD A KCL +L H+D +Y + H+ ++++ + + IWD +G L
Sbjct: 288 YDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYT 347
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356
+ G H L S FL + DG+I
Sbjct: 348 LQG-HTALVGLLRLS--DKFLVSAAADGSI 374
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 212
+L GHT+ + + K ++ D+ +R+W LE+G + + + + K
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 213 LVAGGTDGFIHCWRA 227
LV+ DG I W A
Sbjct: 365 LVSAAADGSIRGWDA 379
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR----AVAAD 209
L GH+ V V + + ++ +D +R+W+L++G K LG T A + D
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--QCQYKFLGHTKDVLSVAFSPD 120
Query: 210 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG 269
+ +V+GG D + W H + R S +LD I SG
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF--------SPSLDAPVIVSG 172
Query: 270 SWDMTVRVWDRALLKCLKVLR-HSDWVYG--LAPHDTTVASTSGSDVY-IWDTNSGCLLT 325
WD V+VWD A + + L+ H+++V ++P + AS+ V +WD G L+
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV 206
GR D L GHT V +V V L +S D + R+W L G ++ S G I +
Sbjct: 186 GRLVTD-LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL-SEMAAGAPINQI 243
Query: 207 --AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGP------IT 257
+ ++ + A G +FD+ E ++ L EH+G
Sbjct: 244 CFSPNRYWMCAATEKGI-----------RIFDL---ENKDIIVELAPEHQGSKKIVPECV 289
Query: 258 SLA--LDLTRIYSGSWDMTVRVW 278
S+A D + +YSG D +RVW
Sbjct: 290 SIAWSADGSTLYSGYTDNVIRVW 312
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 51/250 (20%)
Query: 252 HEGPITSLAL-----DLTRIYSGSWDMTVRVW----DRALLKCLKVLR------HSDWVY 296
H G +TSLA T++ S S D T+ W DR +C L HS +V
Sbjct: 12 HRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVS 71
Query: 297 GLAPHDTTVASTSGS---DVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 352
+A + + S S + +W+ +G C + H + S+A S + +GG
Sbjct: 72 DVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--GHTKDVLSVAFSPDNRQIVSGGR 129
Query: 353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF----EFPWLVSAAGDGKLSLIDVR 408
D A+ ++ + +C + + HT V+ + F + P +VS D + + D
Sbjct: 130 DNALRVWNVKGEC-----MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD-- 182
Query: 409 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG--EEGIVRIWNF 466
L +GR + L G + SV + D +C ++G+ R+W+
Sbjct: 183 --LATGRLVTD---------------LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Query: 467 SQAFEIERRA 476
++ + A
Sbjct: 226 TKGEALSEMA 235
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/339 (20%), Positives = 135/339 (39%), Gaps = 47/339 (13%)
Query: 154 LYGHTEAVLTVFV-LASAKLLFTSGYDSIVRMWHL---EDGFSIASSKPLG----CTIRA 205
+ HT+ V + + +A ++ ++ D + +W L + + +A + G
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA--LDL 263
+++D + ++G DG + W D++ R H + S+A LD
Sbjct: 438 LSSDGQFALSGSWDGELRLW----------DLAAGVSTR---RFVGHTKDVLSVAFSLDN 484
Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVLR-----HSDWV--YGLAPHD---TTVASTSGSDV 313
+I S S D T+++W+ L +C + H DWV +P+ T V+++ V
Sbjct: 485 RQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 314 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373
+W+ S C L H G ++A S G +GG+DG + ++ D E L
Sbjct: 544 KVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW----DLAEGKKLYS 598
Query: 374 ATWIPHTGPVNSLAFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRPTSGKRVSRVIEVE 429
+ +++L F P WL +A G K+ ++ + ++ + +
Sbjct: 599 ---LEANSVIHALCFS-PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654
Query: 430 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 468
P C L+ + G +G++R+W +
Sbjct: 655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 27/189 (14%)
Query: 189 DGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQ 246
+ + +SS IR+V + D K L G D I W DI E +
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW----------DI---ENRKIV 158
Query: 247 FRLWEHEGPITSLALDLT--RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHD 302
L HE I SL + ++ SGS D TVR+WD +C L D V +A P D
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 303 TTVASTSGSD--VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDG 354
+ D V +WD+ +G L+ ++ H + S+ + G + +G D
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 355 AIHMYEIIN 363
++ ++ + N
Sbjct: 279 SVKLWNLQN 287
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 26/197 (13%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVA-ADK 210
+L GH + + ++ S L + D VR+W L G S+ S G T AV+ D
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 268
K + AG D + W + L + SE ++ H+ + S+ D + S
Sbjct: 220 KYIAAGSLDRAVRVWDSETGF--LVERLDSENESGT----GHKDSVYSVVFTRDGQSVVS 273
Query: 269 GSWDMTVRVWD--RALLKC-----------LKVLRHSDWVYGLAPHDTTVASTSGSD--- 312
GS D +V++W+ A K + + H D+V +A SGS
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333
Query: 313 VYIWDTNSGCLLTVVNG 329
V WD SG L ++ G
Sbjct: 334 VLFWDKKSGNPLLMLQG 350
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 49/179 (27%)
Query: 300 PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 359
P + +S+ SD+YI +S+ S G FL TG ED I ++
Sbjct: 111 PENLNTSSSPSSDLYI--------------------RSVCFSPDGKFLATGAEDRLIRIW 150
Query: 360 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPW---LVSAAGDGKLSLIDVRKLLRSGRP 416
+I N +V H + SL + FP LVS +GD + + D LR+G+
Sbjct: 151 DI------ENRKIVMILQGHEQDIYSLDY-FPSGDKLVSGSGDRTVRIWD----LRTGQ- 198
Query: 417 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE-EGIVRIWNFSQAFEIER 474
S + +E ++V G + + G + VR+W+ F +ER
Sbjct: 199 -----CSLTLSIED--------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 145 FLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED---GFSIASSKPLGC 201
F G L GH + V V + +K+ S D VR+W +D G + + +
Sbjct: 5 FTGYQLSATLKGHDQDVRDVVAVDDSKVASVS-RDGTVRLWSKDDQWLGTVVYTGQGFLN 63
Query: 202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL 261
++ ++K+LL+ GG D I+ +P LF SG ++ + L H+G + SL+
Sbjct: 64 SV-CYDSEKELLLFGGKDTXING------VP-LFATSG---EDPLYTLIGHQGNVCSLSF 112
Query: 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV 305
+ SGSWD T +VW L VY L H+ +V
Sbjct: 113 QDGVVISGSWDKTAKVWKEGSL-----------VYNLQAHNASV 145
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 20/190 (10%)
Query: 154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR----AVAAD 209
L GH+ V V + + + + +D +R+W L G + + +G T A ++D
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSD 116
Query: 210 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG 269
+ +V+G D I W + V + + + R P +S + I S
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF----SPNSSNPI----IVSC 168
Query: 270 SWDMTVRVWDRALLKCLKV--LRHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSGCLL 324
WD V+VW+ A K LK + H+ ++ + D ++ ++ G D +WD N G L
Sbjct: 169 GWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Query: 325 TVVNGAHVGN 334
++G + N
Sbjct: 228 YTLDGGDIIN 237
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 268 SGSWDMTVRVWDRAL-LKCLKVLRHSDWVYGLAPHDTTVASTSGS---DVYIWDTNSGCL 323
SGSWD T+R+WD + + H+ V +A SGS + +W+T C
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
Query: 324 LTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381
TV + +H + + + + + + G D + ++ + AN L I HTG
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL------ANCKLKTNHIGHTG 193
Query: 382 PVNSLAFEFPWLVSAAG--DGKLSLIDVRK 409
+N++ + A+G DG+ L D+ +
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 58/261 (22%)
Query: 231 LPHLFDISGSEKQNTQ---FRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR--ALLKC 285
L H F +S S + T W H+G I +G + +R+W++ ALL
Sbjct: 94 LRHPFALSASSGKTTNQVTCLAWSHDG---------NSIVTGVENGELRLWNKTGALLNV 144
Query: 286 LKVLRHSDWVYGLAPHDTTVASTSGSDVYI-WDTNSGCLLTVVNGAHVGNTKSLARSHTG 344
L R T + S +V I W+ SG ++ G + A +H+G
Sbjct: 145 LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204
Query: 345 D--------------FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE- 389
D F+ G + GAI +Y+I + I H GP++ L F
Sbjct: 205 DGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTGKL------IGHHGPISVLEFND 257
Query: 390 -FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD-I 447
L+SA+ DG L ++ G S Q +G +++S +
Sbjct: 258 TNKLLLSASDDGTL------RIWHGGNGNS-------------QNCFYGHSQSIVSASWV 298
Query: 448 GADRIVCGGEEGIVRIWNFSQ 468
G D+++ +G VR+W+ Q
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQ 319
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 20/190 (10%)
Query: 154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR----AVAAD 209
L GH+ V V + + + + +D +R+W L G + + +G T A ++D
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSD 139
Query: 210 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG 269
+ +V+G D I W + V + + + R P +S + I S
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF----SPNSSNPI----IVSC 191
Query: 270 SWDMTVRVWDRALLKCLKV--LRHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSGCLL 324
WD V+VW+ A K LK + H+ ++ + D ++ ++ G D +WD N G L
Sbjct: 192 GWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
Query: 325 TVVNGAHVGN 334
++G + N
Sbjct: 251 YTLDGGDIIN 260
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 268 SGSWDMTVRVWDRAL-LKCLKVLRHSDWVYGLAPHDTTVASTSGS---DVYIWDTNSGCL 323
SGSWD T+R+WD + + H+ V +A SGS + +W+T C
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
Query: 324 LTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381
TV + +H + + + + + + G D + ++ + AN L I HTG
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL------ANCKLKTNHIGHTG 216
Query: 382 PVNSLAFEFPWLVSAAG--DGKLSLIDVRK 409
+N++ + A+G DG+ L D+ +
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVAADKKLLV 214
GH +AV + A K L +S DS++++W+ + G + + + D +LL
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL- 1059
Query: 215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD 272
+ DG + W I+G +++ H+G + S A+ D T+ S S D
Sbjct: 1060 SWSFDGTVKVWNV---------ITGRIERDFTC----HQGTVLSCAISSDATKFSSTSAD 1106
Query: 273 MTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLL 324
T ++W LL L L+ H+ V A + +G D + IW+ + G LL
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVAADKKLLV 214
GH +AV + A K L +S DS++++W+ + G + + + D +LL
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL- 1066
Query: 215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD 272
+ DG + W I+G +++ H+G + S A+ D T+ S S D
Sbjct: 1067 SWSFDGTVKVWNV---------ITGRIERDFTC----HQGTVLSCAISSDATKFSSTSAD 1113
Query: 273 MTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLL 324
T ++W LL L L+ H+ V A + +G D + IW+ + G LL
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 117/333 (35%), Gaps = 107/333 (32%)
Query: 209 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF-----RLWEHEGPITSLALDL 263
D +L++G D + W+ E E+QN F L H ++ LAL
Sbjct: 38 DSPVLISGSRDKTVMIWKLYE-----------EEQNGYFGIPHKALTGHNHFVSDLALSQ 86
Query: 264 TRIY--SGSWDMTVRVWD--------------------------RALL--------KCLK 287
+ S SWD T+R+WD R +L K
Sbjct: 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 288 VL-----------RHSDWV---------------YGLAPHDTTVASTSGSD--VYIWDTN 319
+L HSDWV AP+ +V G D + +W+TN
Sbjct: 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV----GWDGRLKVWNTN 202
Query: 320 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379
T AH N L+ S G ++ TGG+D + +++I+N +
Sbjct: 203 FQIRYTF--KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGS---- 256
Query: 380 TGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-- 435
+N +AF + W+ G + + L+ T K IE EP +
Sbjct: 257 --TINQIAFNPKLQWVAVGTDQG----VKIFNLM-----TQSKAPVCTIEAEPITKAEGQ 305
Query: 436 --HGFECNLLSVDIGADRIVCGGEEGIVRIWNF 466
+C L+ + ++ G +G++R ++F
Sbjct: 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 37/228 (16%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADK 210
GH V++V + A ++ + D +++W ++ G +A+ LG +R V +K
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT--LLGHNDWVSQVRVVPNEK 161
Query: 211 K-----LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL 263
+++ G D + W + F I H I +L D
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQ-----FQIEAD--------FIGHNSNINTLTASPDG 208
Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSG 321
T I S D + +W+ A K + L D V+ LA P+ +A+ + + + ++ +
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 322 CLLTVVNGAHVGNTK-------SLARSHTGDFLFTGGEDGAIHMYEII 362
L+ + G +K SLA S G LF G D I +++++
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 258 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 286
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 287 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 326
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 386
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 243
Query: 387 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 416
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 37/228 (16%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADK 210
GH V++V + A ++ + D +++W ++ G +A+ LG +R V +K
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT--LLGHNDWVSQVRVVPNEK 155
Query: 211 K-----LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL 263
+++ G D + W + F I H I +L D
Sbjct: 156 ADDDSVTIISAGNDKMVKAWNLNQ-----FQIEAD--------FIGHNSNINTLTASPDG 202
Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSG 321
T I S D + +W+ A K + L D V+ LA P+ +A+ + + + ++ +
Sbjct: 203 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 262
Query: 322 CLLTVVNGAHVGNTK-------SLARSHTGDFLFTGGEDGAIHMYEII 362
L+ + G +K SLA S G LF G D I +++++
Sbjct: 263 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 310
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 258 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 286
+L D S SWD T+R+WD A K +
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 287 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 326
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 126 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 386
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 186 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 237
Query: 387 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 416
AF P WL +A G K+ +D + L+ RP
Sbjct: 238 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 270
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 37/228 (16%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADK 210
GH V++V + A ++ + D +++W ++ G +A+ LG +R V +K
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT--LLGHNDWVSQVRVVPNEK 161
Query: 211 K-----LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL 263
+++ G D + W + F I H I +L D
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQ-----FQIEAD--------FIGHNSNINTLTASPDG 208
Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSG 321
T I S D + +W+ A K + L D V+ LA P+ +A+ + + + ++ +
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 322 CLLTVVNGAHVGNTK-------SLARSHTGDFLFTGGEDGAIHMYEII 362
L+ + G +K SLA S G LF G D I +++++
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 258 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 286
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 287 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 326
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 386
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 243
Query: 387 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 416
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 20/183 (10%)
Query: 245 TQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-- 299
++F +EH+ ++++++ T+ SGS D+ ++VWD A L R H+ V +A
Sbjct: 119 SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178
Query: 300 PHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGN-TKSLA-RSHTGDFLFTGGEDGA 355
PH +V + D + +WDT + + + G SLA + G E+G
Sbjct: 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238
Query: 356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAF---EFPWLVSAAGDGKLSLID--VRKL 410
+ + + T++ ++++ + H+ V L F P+L S + D L+++D + +L
Sbjct: 239 VSLVD-----TKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL 292
Query: 411 LRS 413
RS
Sbjct: 293 FRS 295
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 37/226 (16%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADK 210
GH V++V + A ++ + D +++W ++ G +A+ LG +R V +K
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT--LLGHNDWVSQVRVVPNEK 161
Query: 211 K-----LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL 263
+++ G D + W + F I H I +L D
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQ-----FQIEAD--------FIGHNSNINTLTASPDG 208
Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSG 321
T I S D + +W+ A K + L D V+ LA P+ +A+ + + + ++ +
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 322 CLLTVVNGAHVGNTK-------SLARSHTGDFLFTGGEDGAIHMYE 360
L+ + G +K SLA S G LF G D I +++
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 258 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 286
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 287 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 326
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 386
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 243
Query: 387 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 416
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 101/248 (40%), Gaps = 46/248 (18%)
Query: 154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKK 211
L GH V++V + + + +S D+ +R+W LE+G I S + P+ A + D +
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 212 LLVAG--------------------------------GTDGFIHCWRAVEVLPHLFDISG 239
L G DG A++ + ++FDI+
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Query: 240 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY 296
+ +T L H PI SL D + + S D ++++D L H+ WV
Sbjct: 196 GKLLHT---LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252
Query: 297 GLA--PHDTTV-ASTSGSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 352
+A P DT +S+S V +WD + C+ T + H + + G + + G+
Sbjct: 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQDQVWGVKYNGNGSKIVSVGD 310
Query: 353 DGAIHMYE 360
D IH+Y+
Sbjct: 311 DQEIHIYD 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 37/228 (16%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADK 210
GH V++V + A ++ + D +++W ++ G +A+ LG +R V +K
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT--LLGHNDWVSQVRVVPNEK 161
Query: 211 K-----LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL 263
+++ G D + W + F I H I +L D
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQ-----FQIEAD--------FIGHNSNINTLTASPDG 208
Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSG 321
T I S D + +W+ A K + L D V+ LA P+ +A+ + + + ++ +
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 322 CLLTVVNGAHVGNTK-------SLARSHTGDFLFTGGEDGAIHMYEII 362
L+ + G + SLA S G LF G D I +++++
Sbjct: 269 YLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 258 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 286
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 287 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 326
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 386
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 243
Query: 387 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 416
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 47/253 (18%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKK--LL 213
GH+ V + A ++ +D +R+W + G + + +V DKK +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 214 VAGGTDGFIHCW-----------------RAVEVLPH--------LFDISGSEKQNTQFR 248
++G D I W V V+P+ +G++K +
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Query: 249 LWE---------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG 297
L + H I +L D T I S D + +W+ A K L D V+
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS 242
Query: 298 LA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTK-------SLARSHTGDFLF 348
LA P+ +A+ + + + ++ + L+ + G +K SLA S G LF
Sbjct: 243 LAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 349 TGGEDGAIHMYEI 361
G D I ++++
Sbjct: 303 AGYTDNVIRVWQV 315
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 258 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 286
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 287 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 326
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 386
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIXLWNLA--AKKAXYTLSA-----QDEVFSL 243
Query: 387 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 416
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 46/291 (15%)
Query: 203 IRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 260
IR+VA LL AG D + W E F++ + + HE + +A
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEM------DLLAIIEGHENEVKGVA 114
Query: 261 L--DLTRIYSGSWDMTVRVWDR----ALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGS 311
D + + S D +V +W+ +C+ VL+ HS V + P + +AS+S
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 312 D-VYIW---DTNSGCLLTVVNGAHVGNTKSLARSHT-GDF-LFTGGEDGAIHMYEIINDC 365
D V IW D + C+ V+NG H G S T G F L +G +D + +++ + D
Sbjct: 175 DTVRIWKDYDDDWECV-AVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 366 TEANVLLVATWI---PHTGPVNSLAFEFPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKR 421
+ V I H V ++A+ F L+++ G DG L++ +
Sbjct: 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY--------------EE 278
Query: 422 VSRVIEVEPPQRMLHG-FECNLLS-VDIGADRIVC-GGEEGIVRIWNFSQA 469
V +V + + HG +E N++ +++ I+ GG++GIV W+ +A
Sbjct: 279 VDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 46/257 (17%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 212
+ +G + + L + ++ F S + +WH++ AD+K
Sbjct: 982 IAFGDENGAIEILELVNNRI-FQSRFQHKKTVWHIQ-----------------FTADEKT 1023
Query: 213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD 272
L++ D I W L + G ++ FRL L +R+ S S+D
Sbjct: 1024 LISSSDDAEIQVWNWQ--LDKCIFLRGHQETVKDFRL-----------LKNSRLLSWSFD 1070
Query: 273 MTVRVWDRALLKCLK--VLRHSDWVYGLAPHDTTVASTSGSD--VYIWDTNSGCLLTVVN 328
TV+VW+ K V + HD T S++ +D IW + L +
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMY-----EIINDCTEANVLLVATWIPHTGPV 383
G H G + A S L TG ++G I ++ E+++ C + AT H G V
Sbjct: 1131 G-HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT---HGGWV 1186
Query: 384 NSLAF--EFPWLVSAAG 398
L F + L+SA G
Sbjct: 1187 TDLCFSPDGKMLISAGG 1203
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 266 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 317
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D +++WD
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 266 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 317
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D +++WD
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 31/152 (20%)
Query: 237 ISGSEKQNTQFRLWE-------------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRA 281
ISGS +T RLW+ HEG I S+ D R +GS D T R++D
Sbjct: 222 ISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Query: 282 LLKCLKVL-RHSDWVYGLAPHDTTVAST----------SGSDVYIWDTNSGCL---LTVV 327
L+V R D P T+VA + S D Y+WDT + L +
Sbjct: 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 328 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 359
+H G L S G L TG D + ++
Sbjct: 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA----------SSKPL 199
++ +GH + +V + T D R++ + G + + P+
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 200 GCTIRAVAADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPIT 257
++ A + +LL AG ++G + W + E++ +L + S HEG I+
Sbjct: 301 VTSV-AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS-----------HEGRIS 348
Query: 258 SLAL--DLTRIYSGSWDMTVRVW 278
L L D + + +GSWD +++W
Sbjct: 349 CLGLSSDGSALCTGSWDKNLKIW 371
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 266 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 317
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D +++WD
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 107/257 (41%), Gaps = 29/257 (11%)
Query: 114 LPIASAPLGAG-FSDDKSWKELFVEREFRSKTF---LGRYSIDVLYGHTEAVLTVFVLAS 169
+ + P+ AG F K+W + +FR + F G +D H + + ++ V +
Sbjct: 51 IQVTETPVRAGKFIARKNWI-IVGSDDFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPT 108
Query: 170 AKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKKLLVAGGTDGFIHCW 225
+ + D V++W+ E+ +++ + + + D +G D + W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKC 285
+ P+ +G E+ + P+ D + + S D+T+++WD C
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYY----PLP----DKPYMITASDDLTIKIWDYQTKSC 220
Query: 286 LKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTVVNGAHVGNTKS--LA 339
+ L H V H T SGS+ + IW++++ + +N VG +S +A
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSWCIA 277
Query: 340 RSHTG--DFLFTGGEDG 354
TG +++ +G ++G
Sbjct: 278 THPTGRKNYIASGFDNG 294
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 116/302 (38%), Gaps = 72/302 (23%)
Query: 252 HEGPITSLALDLTRIY--SGSWDMTVRVWDRALLKCLKVLRHSDWV----------YGLA 299
H G I S+ +D Y +GS D ++++WD + +C+ + V Y LA
Sbjct: 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLA 132
Query: 300 PHDTTVASTSGSDVYIWDTNSGCL-LTVVNG-------AHVG-NTKSLAR-SHTGDFLFT 349
D + + ++Y + +S LT V+ H G + ++A S G ++
Sbjct: 133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192
Query: 350 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDV 407
G +DG I Y++ N N V + H ++ + F + + ++++ D L+DV
Sbjct: 193 GHKDGKISKYDVSN-----NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247
Query: 408 RKL----------------------------------LRSGRPTSGKRVSR----VIEVE 429
L + + GK +R + E E
Sbjct: 248 STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307
Query: 430 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA-----FEIERRARALRGIRL 484
+ H N +++ GGE+G +R+ +F ++ +++E+ A A ++
Sbjct: 308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKAAEAKEHMQE 367
Query: 485 EN 486
N
Sbjct: 368 AN 369
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
+VY+W+ +SG + + S+ SH G FL G +G + +Y++
Sbjct: 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA 205
+ + I L GH+ V + + L + G D++V++W + ++A
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264
Query: 206 VA----ADKKLLVAGGT-DGFIHCWRA 227
VA L GGT D IH W A
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNA 291
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 24/167 (14%)
Query: 208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----D 262
+D L +GG D + W A +P +F H + ++A +
Sbjct: 227 SDGLQLASGGNDNVVQIWDARSSIP-------------KFTKTNHNAAVKAVAWCPWQSN 273
Query: 263 LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTSG---SDVYIWD 317
L G+ D + W+ A + + V L +PH + ST G +++ IW
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333
Query: 318 TNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 363
+S L V+ AH A S G L T D + + + +
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 19/128 (14%)
Query: 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA----SSKPLGCTIRAVAADKKL 212
H V +V S + D+ R++ L +A S G + + +L
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS 270
L AG D I+ W +VL K + L+ HE +++L + D T SGS
Sbjct: 299 LFAGYNDYTINVW---DVL----------KGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Query: 271 WDMTVRVW 278
WD T+RVW
Sbjct: 346 WDHTLRVW 353
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 84/228 (36%), Gaps = 30/228 (13%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMW-----HLEDGFSIASSKPLGCTIRAVA 207
L GH VL + + + +S D V +W + E ++ + + C A A
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMAC---AYA 115
Query: 208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS---GSEKQNTQFRLWEHEGPITSLALDLT 264
+ GG D V P FD + ++K++ H +++ + +
Sbjct: 116 PSGCAIACGGLD------NKCSVYPLTFDKNENMAAKKKSVAM----HTNYLSACSFTNS 165
Query: 265 --RIYSGSWDMTVRVWD---RALLKCLKVLRHSDWVYGLAPHDTTVASTSGS---DVYIW 316
+I + S D T +WD LL+ LAP +T SG +W
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 317 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364
D SG + H + S+ +GD +G +D +Y++ D
Sbjct: 226 DMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 266 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 317
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D + +WD
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 244 NTQFRLWEHEGPITSL----ALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY 296
N ++ +H+ P+ ++ A + + + +GSWD T++ WD + VL+ + Y
Sbjct: 118 NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 18/162 (11%)
Query: 209 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEK---QNTQFRLWEHEGPITSL--ALDL 263
D L + G DG I + V+ G++ ++ + H G + L + D
Sbjct: 201 DGSLFASTGGDGTIVLYNGVD---------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251
Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVL----RHSDWVYGLAPHDTTVASTSGSDVYIWDTN 319
T+I S S D T+++W+ A LK K + R D G+ + S S + +
Sbjct: 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 311
Query: 320 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
+ V H +L+ S G LF+ +G I+ ++I
Sbjct: 312 ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 266 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 317
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D + +WD
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 266 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 317
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D + +WD
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG--LAP----HDTTVASTSGSDVYI 315
D S S+D T++VWD L+ V + VY ++P H T G V +
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEI 361
D SG ++ G H +++ S D++ T D + ++++
Sbjct: 171 CDLKSGSCSHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 166 VLASAKLLFTSGYDSIVRMWHLED-----GFSIASSKPLGCTIRAVAADKKLLVAGGTDG 220
+L L G S + +W L + SS P C A++ D K+ + +DG
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDG 163
Query: 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWD 279
I W D+ ++ QF+ ++ D T++++G D TVR WD
Sbjct: 164 NIAVW----------DLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/218 (17%), Positives = 84/218 (38%), Gaps = 44/218 (20%)
Query: 114 LPIASAPLGAG-FSDDKSWKELFVEREFRSKTF---LGRYSIDVLYGHTEAVLTVFVLAS 169
+ + P+ AG F K+W + +FR + F G +D H + + ++ V +
Sbjct: 51 IQVTETPVRAGKFIARKNWI-IVGSDDFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPT 108
Query: 170 AKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKKLLVAGGTDGFIHCW 225
+ + D V++W+ E+ +++ + + + D +G D + W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 226 RAVEVLPHLFDISGSEK--------------------QNTQFRLWEH---------EGPI 256
+ P+ +G E+ + ++W++ EG +
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 257 TSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLKVL 289
++++ L I SGS D T+++W+ + K K L
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
Length = 567
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
Length = 567
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
Length = 567
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1KRA|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
Length = 567
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|4EP8|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|C Chain C, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|C Chain C, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 566
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 110 PIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 110 PIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
pdb|1EJX|C Chain C, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|C Chain C, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|2KAU|C Chain C, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
Length = 567
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1KRC|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 110 PIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 110 PIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1KRB|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 198 PLGCTIRAVAADKKLLVAGGTDGFIH 223
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 51/287 (17%), Positives = 108/287 (37%), Gaps = 58/287 (20%)
Query: 114 LPIASAPLGAG-FSDDKSWKELFVEREFRSKTF---LGRYSIDVLYGHTEAVLTVFVLAS 169
+ + P+ AG F K+W + +FR + F G +D H + + ++ V +
Sbjct: 51 IQVTETPVRAGKFIARKNWI-IVGSDDFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPT 108
Query: 170 AKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKKLLVAGGTDGFIHCW 225
+ + D V++W+ E+ +++ + + + D +G D + W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 226 RAVEVLPHLFDISGSEK--------------------QNTQFRLWEH---------EGPI 256
+ P+ +G E+ + ++W++ EG +
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 257 TSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVAST 308
++++ L I SGS D T+++W+ + K K L W P
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288
Query: 309 SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA 355
SG D N +L++ N + +L+ G +++GG++ A
Sbjct: 289 SGFD------NGFTVLSLGN-----DEPTLSLDPVGKLVWSGGKNAA 324
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 51/287 (17%), Positives = 108/287 (37%), Gaps = 58/287 (20%)
Query: 114 LPIASAPLGAG-FSDDKSWKELFVEREFRSKTF---LGRYSIDVLYGHTEAVLTVFVLAS 169
+ + P+ AG F K+W + +FR + F G +D H + + ++ V +
Sbjct: 51 IQVTETPVRAGKFIARKNWI-IVGSDDFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPT 108
Query: 170 AKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKKLLVAGGTDGFIHCW 225
+ + D V++W+ E+ +++ + + + D +G D + W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 226 RAVEVLPHLFDISGSEK--------------------QNTQFRLWEH---------EGPI 256
+ P+ +G E+ + ++W++ EG +
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 257 TSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVAST 308
++++ L I SGS D T+++W+ + K K L W P
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288
Query: 309 SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA 355
SG D N +L++ N + +L+ G +++GG++ A
Sbjct: 289 SGFD------NGFTVLSLGN-----DEPTLSLDPVGKLVWSGGKNAA 324
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 211
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 269
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 284 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 270 SWDMTVRVWD 279
SWD +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 211
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 269
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 295 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 270 SWDMTVRVWD 279
SWD +++W+
Sbjct: 342 SWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 211
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 269
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 284 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 270 SWDMTVRVWD 279
SWD +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 211
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 269
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 284 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 270 SWDMTVRVWD 279
SWD +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 211
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 269
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 284 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 270 SWDMTVRVWD 279
SWD +++W+
Sbjct: 331 SWDSFLKIWN 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,176,748
Number of Sequences: 62578
Number of extensions: 674582
Number of successful extensions: 1957
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1538
Number of HSP's gapped (non-prelim): 277
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)