Query 009373
Match_columns 536
No_of_seqs 867 out of 4767
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 12:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0281 Beta-TrCP (transducin 100.0 1.2E-58 2.6E-63 401.4 23.2 410 29-472 38-482 (499)
2 KOG0271 Notchless-like WD40 re 100.0 2.3E-48 5E-53 341.5 24.9 310 151-507 108-469 (480)
3 KOG0274 Cdc4 and related F-box 100.0 2E-46 4.3E-51 368.1 33.3 412 23-475 65-490 (537)
4 KOG0271 Notchless-like WD40 re 100.0 2.1E-47 4.6E-52 335.5 23.2 310 105-465 116-479 (480)
5 KOG0286 G-protein beta subunit 100.0 1.2E-41 2.6E-46 289.4 32.4 282 151-465 48-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-43 5.3E-48 314.0 22.8 274 153-465 170-458 (459)
7 KOG0315 G-protein beta subunit 100.0 3.1E-40 6.7E-45 274.5 26.4 277 171-477 11-298 (311)
8 KOG0279 G protein beta subunit 100.0 7.5E-37 1.6E-41 258.7 31.4 287 150-467 7-313 (315)
9 KOG0295 WD40 repeat-containing 100.0 8.3E-38 1.8E-42 273.7 23.8 278 150-465 100-404 (406)
10 KOG0272 U4/U6 small nuclear ri 100.0 9.8E-39 2.1E-43 284.7 17.8 238 149-406 208-458 (459)
11 KOG0285 Pleiotropic regulator 100.0 3E-37 6.4E-42 269.5 25.7 288 150-469 143-441 (460)
12 KOG0281 Beta-TrCP (transducin 100.0 2.7E-39 5.9E-44 281.1 12.4 250 146-410 225-479 (499)
13 KOG0286 G-protein beta subunit 100.0 1.4E-37 3.1E-42 264.6 21.2 286 88-406 41-343 (343)
14 KOG0273 Beta-transducin family 100.0 5.9E-37 1.3E-41 276.9 26.3 310 152-513 173-517 (524)
15 KOG0265 U5 snRNP-specific prot 100.0 2.1E-35 4.5E-40 252.4 26.3 281 150-465 39-336 (338)
16 KOG0284 Polyadenylation factor 100.0 3.6E-36 7.9E-41 267.1 20.3 274 155-467 93-380 (464)
17 KOG0319 WD40-repeat-containing 100.0 1.7E-35 3.7E-40 281.4 26.1 337 141-512 87-612 (775)
18 KOG0316 Conserved WD40 repeat- 100.0 2E-34 4.4E-39 238.0 26.0 276 150-467 9-299 (307)
19 KOG0291 WD40-repeat-containing 100.0 9E-34 2E-38 270.1 30.8 304 151-474 300-619 (893)
20 KOG0279 G protein beta subunit 100.0 7.9E-34 1.7E-38 240.4 26.7 281 192-507 7-301 (315)
21 KOG0645 WD40 repeat protein [G 100.0 4.4E-33 9.6E-38 234.9 31.1 284 150-467 6-311 (312)
22 KOG0313 Microtubule binding pr 100.0 4.1E-34 8.8E-39 251.9 25.3 277 156-467 103-418 (423)
23 KOG0276 Vesicle coat complex C 100.0 5E-34 1.1E-38 266.3 26.9 346 152-533 7-385 (794)
24 KOG0318 WD40 repeat stress pro 100.0 4.6E-33 1E-37 255.0 31.8 293 152-467 184-602 (603)
25 KOG0273 Beta-transducin family 100.0 9.2E-34 2E-38 256.3 26.5 269 158-467 235-523 (524)
26 KOG0319 WD40-repeat-containing 100.0 1.2E-33 2.5E-38 269.0 28.4 287 150-472 315-624 (775)
27 KOG0263 Transcription initiati 100.0 1.8E-33 3.9E-38 270.5 27.3 281 150-450 370-696 (707)
28 cd00200 WD40 WD40 domain, foun 100.0 5.1E-32 1.1E-36 255.1 35.8 276 151-465 2-289 (289)
29 KOG0291 WD40-repeat-containing 100.0 3.9E-32 8.5E-37 259.0 33.2 317 154-506 261-599 (893)
30 KOG0282 mRNA splicing factor [ 100.0 3.9E-34 8.5E-39 259.7 17.9 285 145-465 201-503 (503)
31 KOG0296 Angio-associated migra 100.0 1E-32 2.2E-37 242.1 26.1 279 150-467 98-398 (399)
32 KOG0296 Angio-associated migra 100.0 8.8E-33 1.9E-37 242.4 24.4 325 149-516 55-395 (399)
33 KOG0315 G-protein beta subunit 100.0 3.4E-32 7.4E-37 226.7 26.2 243 148-411 30-291 (311)
34 PLN00181 protein SPA1-RELATED; 100.0 1.6E-31 3.5E-36 284.5 38.3 292 153-466 478-792 (793)
35 KOG0266 WD40 repeat-containing 100.0 8.9E-32 1.9E-36 266.3 33.2 279 151-467 151-454 (456)
36 KOG0293 WD40 repeat-containing 100.0 8.8E-33 1.9E-37 245.9 22.4 278 150-468 216-514 (519)
37 KOG0295 WD40 repeat-containing 100.0 9.8E-33 2.1E-37 242.0 20.0 245 143-407 135-405 (406)
38 KOG0285 Pleiotropic regulator 100.0 2.3E-32 5E-37 239.0 20.9 275 193-509 144-429 (460)
39 KOG0318 WD40 repeat stress pro 100.0 1.1E-30 2.3E-35 239.6 32.2 342 145-513 134-511 (603)
40 KOG0263 Transcription initiati 100.0 3.9E-32 8.3E-37 261.4 23.9 231 146-390 439-695 (707)
41 KOG0306 WD40-repeat-containing 100.0 2.9E-31 6.2E-36 253.0 27.4 279 152-470 367-667 (888)
42 KOG0274 Cdc4 and related F-box 100.0 2.7E-31 5.8E-36 261.5 27.8 250 142-413 232-487 (537)
43 KOG0284 Polyadenylation factor 100.0 8E-33 1.7E-37 245.9 13.2 269 109-409 101-381 (464)
44 KOG0306 WD40-repeat-containing 100.0 8E-31 1.7E-35 250.0 25.4 370 105-517 108-662 (888)
45 KOG0265 U5 snRNP-specific prot 100.0 5.4E-31 1.2E-35 225.5 20.2 274 193-511 40-330 (338)
46 KOG0283 WD40 repeat-containing 100.0 9.9E-31 2.1E-35 253.9 23.3 296 145-468 253-577 (712)
47 KOG0282 mRNA splicing factor [ 100.0 1E-31 2.2E-36 244.1 15.4 239 148-406 248-503 (503)
48 KOG0292 Vesicle coat complex C 100.0 2.5E-30 5.5E-35 250.5 26.0 241 153-410 4-282 (1202)
49 KOG0313 Microtubule binding pr 100.0 4.7E-30 1E-34 226.4 24.1 262 141-408 128-418 (423)
50 KOG0277 Peroxisomal targeting 100.0 3.7E-30 7.9E-35 215.3 21.5 269 162-466 12-308 (311)
51 KOG0276 Vesicle coat complex C 100.0 7.5E-30 1.6E-34 238.6 24.8 246 140-404 37-295 (794)
52 KOG0645 WD40 repeat protein [G 100.0 4.2E-29 9.1E-34 211.0 25.5 237 155-408 58-311 (312)
53 KOG0293 WD40 repeat-containing 100.0 5.9E-31 1.3E-35 234.3 14.9 269 111-409 231-514 (519)
54 KOG0268 Sof1-like rRNA process 100.0 8.8E-31 1.9E-35 229.6 15.6 281 149-472 57-350 (433)
55 KOG0266 WD40 repeat-containing 100.0 1.3E-29 2.7E-34 251.0 24.7 239 150-408 195-454 (456)
56 KOG0278 Serine/threonine kinas 100.0 1.1E-30 2.5E-35 217.7 14.0 240 151-410 52-299 (334)
57 KOG0288 WD40 repeat protein Ti 100.0 3.3E-30 7.1E-35 229.7 15.3 281 151-465 168-459 (459)
58 KOG0643 Translation initiation 100.0 2.6E-28 5.7E-33 205.7 25.4 290 152-469 4-319 (327)
59 KOG1446 Histone H3 (Lys4) meth 100.0 3.6E-27 7.9E-32 204.2 32.2 281 151-469 7-305 (311)
60 KOG0647 mRNA export protein (c 100.0 2.3E-28 5E-33 209.6 24.2 242 155-410 24-283 (347)
61 KOG1407 WD40 repeat protein [F 100.0 2.4E-28 5.2E-33 205.3 23.6 277 152-468 14-312 (313)
62 KOG0300 WD40 repeat-containing 100.0 2.1E-28 4.6E-33 211.0 22.0 298 150-469 140-478 (481)
63 PLN00181 protein SPA1-RELATED; 100.0 1E-27 2.2E-32 255.5 32.4 308 179-513 457-787 (793)
64 KOG0278 Serine/threonine kinas 100.0 5.8E-29 1.3E-33 207.6 17.0 281 151-473 7-303 (334)
65 KOG0641 WD40 repeat protein [G 100.0 3.1E-26 6.8E-31 188.5 32.5 284 155-467 29-349 (350)
66 KOG1036 Mitotic spindle checkp 100.0 2.8E-27 6.1E-32 203.8 26.1 265 157-457 12-294 (323)
67 KOG0640 mRNA cleavage stimulat 100.0 4.4E-28 9.6E-33 208.4 20.4 284 149-467 103-426 (430)
68 KOG0772 Uncharacterized conser 100.0 1.5E-27 3.3E-32 218.4 23.6 293 151-468 160-488 (641)
69 KOG0292 Vesicle coat complex C 100.0 3.9E-27 8.5E-32 228.6 27.4 324 128-508 20-384 (1202)
70 KOG0275 Conserved WD40 repeat- 100.0 1.4E-28 3E-33 212.7 15.4 272 155-465 210-507 (508)
71 KOG0316 Conserved WD40 repeat- 100.0 1.2E-27 2.6E-32 198.0 20.1 252 137-408 38-299 (307)
72 KOG0277 Peroxisomal targeting 100.0 6E-28 1.3E-32 202.1 18.1 233 156-407 58-308 (311)
73 KOG0310 Conserved WD40 repeat- 100.0 3.9E-27 8.4E-32 214.8 24.3 274 153-468 21-310 (487)
74 cd00200 WD40 WD40 domain, foun 100.0 2.6E-26 5.5E-31 216.1 30.4 237 150-406 43-289 (289)
75 KOG0308 Conserved WD40 repeat- 100.0 3.5E-28 7.6E-33 228.6 17.3 236 157-410 20-287 (735)
76 KOG0310 Conserved WD40 repeat- 100.0 2.8E-27 6E-32 215.8 21.2 240 150-409 60-310 (487)
77 KOG0294 WD40 repeat-containing 100.0 2.1E-26 4.6E-31 198.8 23.8 236 151-410 36-283 (362)
78 KOG0301 Phospholipase A2-activ 100.0 1.4E-26 3.1E-31 219.4 24.6 268 151-467 7-288 (745)
79 KOG0973 Histone transcription 100.0 3.8E-26 8.3E-31 227.8 28.0 291 157-471 12-359 (942)
80 KOG0294 WD40 repeat-containing 100.0 8E-26 1.7E-30 195.2 25.2 255 173-469 4-283 (362)
81 KOG1539 WD repeat protein [Gen 100.0 5.6E-26 1.2E-30 219.6 26.8 363 140-527 184-648 (910)
82 PTZ00421 coronin; Provisional 100.0 1.8E-25 4E-30 220.2 30.8 238 152-408 69-331 (493)
83 KOG0289 mRNA splicing factor [ 100.0 1E-25 2.2E-30 202.4 26.1 272 158-466 219-505 (506)
84 KOG0643 Translation initiation 100.0 1.1E-26 2.3E-31 196.0 18.6 289 99-409 7-318 (327)
85 KOG0305 Anaphase promoting com 100.0 3.5E-26 7.6E-31 216.8 24.4 234 156-409 215-462 (484)
86 KOG0275 Conserved WD40 repeat- 100.0 1.4E-27 2.9E-32 206.6 13.4 235 152-406 257-507 (508)
87 KOG0641 WD40 repeat protein [G 99.9 4E-25 8.7E-30 182.0 26.1 241 152-408 83-349 (350)
88 KOG1407 WD40 repeat protein [F 99.9 3.1E-26 6.8E-31 192.6 20.0 271 194-513 14-296 (313)
89 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.6E-31 207.1 18.4 236 150-405 211-458 (459)
90 KOG0305 Anaphase promoting com 99.9 2E-25 4.3E-30 211.7 27.0 264 164-469 183-463 (484)
91 KOG0264 Nucleosome remodeling 99.9 6.2E-26 1.3E-30 205.5 22.3 268 148-468 114-405 (422)
92 KOG0299 U3 snoRNP-associated p 99.9 3.3E-25 7.1E-30 200.8 25.1 246 151-412 135-414 (479)
93 PTZ00421 coronin; Provisional 99.9 5.9E-24 1.3E-28 209.6 33.8 242 157-410 19-292 (493)
94 KOG2096 WD40 repeat protein [G 99.9 3.2E-24 6.9E-29 185.5 27.5 309 141-469 69-404 (420)
95 KOG1332 Vesicle coat complex C 99.9 4.1E-25 8.9E-30 184.1 18.4 250 152-468 5-287 (299)
96 KOG0308 Conserved WD40 repeat- 99.9 2.5E-25 5.4E-30 209.5 17.8 316 151-476 66-402 (735)
97 PTZ00420 coronin; Provisional 99.9 3.4E-23 7.3E-28 205.0 33.6 225 175-410 49-295 (568)
98 PTZ00420 coronin; Provisional 99.9 1.4E-23 3E-28 207.7 30.2 225 149-392 65-318 (568)
99 KOG2445 Nuclear pore complex c 99.9 1.7E-23 3.7E-28 180.3 25.4 277 155-467 10-318 (361)
100 KOG0269 WD40 repeat-containing 99.9 1.1E-24 2.4E-29 209.1 19.0 278 161-472 42-345 (839)
101 KOG0299 U3 snoRNP-associated p 99.9 3.9E-24 8.4E-29 193.9 21.3 238 155-408 199-456 (479)
102 KOG0289 mRNA splicing factor [ 99.9 6.7E-24 1.4E-28 190.8 22.1 241 150-407 253-505 (506)
103 KOG0268 Sof1-like rRNA process 99.9 5.1E-25 1.1E-29 193.6 13.9 274 195-517 61-343 (433)
104 KOG0301 Phospholipase A2-activ 99.9 6E-24 1.3E-28 201.8 22.2 232 151-409 50-289 (745)
105 KOG0650 WD40 repeat nucleolar 99.9 1.3E-23 2.7E-28 196.2 22.7 297 151-464 393-732 (733)
106 KOG0646 WD40 repeat protein [G 99.9 9.8E-24 2.1E-28 191.7 20.9 241 158-409 81-351 (476)
107 KOG0640 mRNA cleavage stimulat 99.9 2.8E-24 6E-29 185.2 16.3 247 147-408 161-426 (430)
108 KOG2055 WD40 repeat protein [G 99.9 3.5E-23 7.6E-28 187.7 24.1 283 158-467 213-512 (514)
109 KOG0639 Transducin-like enhanc 99.9 6.5E-24 1.4E-28 194.1 19.1 270 156-466 417-703 (705)
110 KOG1408 WD40 repeat protein [F 99.9 5.6E-23 1.2E-27 195.6 25.1 286 151-474 362-720 (1080)
111 KOG0300 WD40 repeat-containing 99.9 2.7E-23 5.9E-28 179.6 19.6 255 173-470 127-431 (481)
112 KOG1408 WD40 repeat protein [F 99.9 1.3E-23 2.9E-28 199.7 19.1 237 155-409 456-714 (1080)
113 KOG1036 Mitotic spindle checkp 99.9 1.6E-22 3.5E-27 174.6 22.9 270 205-512 20-297 (323)
114 KOG1446 Histone H3 (Lys4) meth 99.9 5.9E-22 1.3E-26 172.1 26.2 272 194-508 8-294 (311)
115 KOG0321 WD40 repeat-containing 99.9 8.4E-23 1.8E-27 192.3 21.7 289 152-473 41-397 (720)
116 KOG4283 Transcription-coupled 99.9 1.9E-22 4.1E-27 172.8 21.8 218 197-415 40-283 (397)
117 KOG0270 WD40 repeat-containing 99.9 8.3E-23 1.8E-27 184.5 19.9 241 209-476 191-458 (463)
118 KOG0973 Histone transcription 99.9 3.4E-22 7.4E-27 199.8 25.7 262 128-409 39-356 (942)
119 KOG1274 WD40 repeat protein [G 99.9 9.4E-22 2E-26 192.8 27.7 236 155-409 10-263 (933)
120 KOG1539 WD repeat protein [Gen 99.9 7.1E-21 1.5E-25 184.7 32.3 341 146-517 102-604 (910)
121 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 178.4 24.1 279 175-477 12-317 (476)
122 KOG0647 mRNA export protein (c 99.9 1.7E-21 3.8E-26 167.6 23.9 268 201-507 30-311 (347)
123 KOG2106 Uncharacterized conser 99.9 1.6E-20 3.5E-25 172.3 31.4 298 159-466 247-625 (626)
124 KOG0283 WD40 repeat-containing 99.9 5.7E-22 1.2E-26 193.3 22.1 243 248-526 261-575 (712)
125 KOG0264 Nucleosome remodeling 99.9 6.4E-22 1.4E-26 179.6 19.7 265 199-527 123-404 (422)
126 KOG4283 Transcription-coupled 99.9 1.4E-20 3.1E-25 161.4 26.3 279 152-467 37-365 (397)
127 KOG2106 Uncharacterized conser 99.9 1.7E-20 3.7E-25 172.1 27.6 312 150-512 192-514 (626)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-20 6.5E-25 176.6 30.5 266 170-475 1-287 (300)
129 KOG1063 RNA polymerase II elon 99.9 1.7E-20 3.7E-25 178.5 27.7 304 150-469 46-439 (764)
130 KOG2048 WD40 repeat protein [G 99.9 7.3E-20 1.6E-24 174.0 31.5 278 153-465 20-317 (691)
131 KOG0321 WD40 repeat-containing 99.9 2.3E-21 5E-26 182.6 20.6 256 150-411 92-394 (720)
132 KOG0302 Ribosome Assembly prot 99.9 2.7E-21 5.8E-26 171.2 19.7 264 197-465 148-436 (440)
133 KOG2048 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 176.8 27.9 327 149-508 59-401 (691)
134 KOG2096 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 163.4 23.4 288 195-509 81-393 (420)
135 KOG0772 Uncharacterized conser 99.9 3.3E-21 7.3E-26 177.1 20.5 257 193-474 160-452 (641)
136 KOG0267 Microtubule severing p 99.9 6.8E-23 1.5E-27 195.5 9.1 217 171-413 5-231 (825)
137 KOG1274 WD40 repeat protein [G 99.9 2.7E-20 5.8E-25 182.7 26.6 265 201-507 16-288 (933)
138 KOG0269 WD40 repeat-containing 99.9 6.5E-22 1.4E-26 190.3 14.1 230 162-409 91-341 (839)
139 KOG1332 Vesicle coat complex C 99.9 1.9E-21 4.2E-26 162.4 14.5 236 198-507 9-274 (299)
140 KOG0639 Transducin-like enhanc 99.9 3.3E-21 7.2E-26 176.5 15.6 229 157-407 464-703 (705)
141 KOG1063 RNA polymerase II elon 99.9 8E-20 1.7E-24 173.9 24.3 286 153-469 262-650 (764)
142 KOG1273 WD40 repeat protein [G 99.9 7.5E-20 1.6E-24 158.4 21.8 280 161-475 26-330 (405)
143 KOG0270 WD40 repeat-containing 99.9 2.5E-20 5.5E-25 168.6 19.6 223 170-410 192-451 (463)
144 KOG0267 Microtubule severing p 99.9 7.5E-22 1.6E-26 188.4 9.2 221 151-391 21-249 (825)
145 KOG1445 Tumor-specific antigen 99.9 1.9E-20 4.2E-25 176.2 17.8 144 310-472 602-755 (1012)
146 KOG1034 Transcriptional repres 99.9 1.4E-19 2.9E-24 157.8 21.7 289 150-467 30-383 (385)
147 KOG0642 Cell-cycle nuclear pro 99.9 7.9E-21 1.7E-25 176.9 14.6 248 153-410 289-563 (577)
148 KOG1007 WD repeat protein TSSC 99.9 2.9E-19 6.2E-24 153.0 22.0 281 178-468 38-362 (370)
149 KOG4328 WD40 protein [Function 99.8 2.4E-19 5.2E-24 162.9 22.3 287 150-467 178-495 (498)
150 KOG0302 Ribosome Assembly prot 99.8 1.4E-19 3E-24 160.4 19.8 240 154-405 147-435 (440)
151 KOG2919 Guanine nucleotide-bin 99.8 4.5E-19 9.7E-24 154.2 21.6 269 161-468 52-368 (406)
152 KOG1188 WD40 repeat protein [G 99.8 6.4E-20 1.4E-24 160.7 16.2 185 211-411 41-245 (376)
153 KOG0307 Vesicle coat complex C 99.8 1.8E-20 3.8E-25 188.5 13.2 277 163-470 11-330 (1049)
154 KOG4378 Nuclear protein COP1 [ 99.8 2.8E-19 6E-24 163.8 18.9 253 160-450 36-304 (673)
155 KOG0322 G-protein beta subunit 99.8 1.4E-19 3E-24 153.1 15.7 251 150-407 6-322 (323)
156 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.5E-17 3.3E-22 158.0 30.7 240 150-411 23-282 (300)
157 KOG1517 Guanine nucleotide bin 99.8 1.1E-18 2.4E-23 173.6 22.9 290 153-469 1059-1383(1387)
158 KOG0649 WD40 repeat protein [G 99.8 1.4E-17 3E-22 139.4 23.9 233 146-405 50-313 (325)
159 KOG4378 Nuclear protein COP1 [ 99.8 6.6E-19 1.4E-23 161.4 17.4 282 177-501 9-305 (673)
160 KOG2919 Guanine nucleotide-bin 99.8 2.9E-18 6.3E-23 149.2 20.2 270 204-508 55-359 (406)
161 KOG4328 WD40 protein [Function 99.8 1.9E-18 4E-23 157.2 18.5 280 196-508 182-483 (498)
162 KOG2110 Uncharacterized conser 99.8 4.6E-16 1E-20 138.2 32.0 230 158-410 5-250 (391)
163 KOG2055 WD40 repeat protein [G 99.8 3.7E-18 8E-23 155.3 19.1 272 201-512 216-505 (514)
164 KOG0649 WD40 repeat protein [G 99.8 4.8E-17 1E-21 136.2 23.4 240 160-410 12-276 (325)
165 KOG2445 Nuclear pore complex c 99.8 5E-18 1.1E-22 146.8 17.9 258 250-524 10-323 (361)
166 KOG1034 Transcriptional repres 99.8 5.4E-18 1.2E-22 147.9 16.6 240 156-408 87-383 (385)
167 KOG1273 WD40 repeat protein [G 99.8 2.7E-17 5.8E-22 142.8 19.9 271 201-506 26-310 (405)
168 KOG1009 Chromatin assembly com 99.8 8.7E-17 1.9E-21 144.3 23.4 290 158-472 13-377 (434)
169 KOG0644 Uncharacterized conser 99.8 1E-18 2.2E-23 169.7 10.5 275 151-473 183-474 (1113)
170 KOG1240 Protein kinase contain 99.8 8.4E-17 1.8E-21 162.8 24.4 259 149-413 1039-1339(1431)
171 KOG1334 WD40 repeat protein [G 99.8 8.5E-18 1.8E-22 154.1 14.7 291 151-470 135-469 (559)
172 KOG0307 Vesicle coat complex C 99.8 3.2E-18 6.9E-23 172.5 12.7 235 159-411 65-330 (1049)
173 COG2319 FOG: WD40 repeat [Gene 99.8 6.5E-15 1.4E-19 147.1 36.4 283 152-470 59-362 (466)
174 KOG0290 Conserved WD40 repeat- 99.8 8.7E-17 1.9E-21 138.1 18.5 231 155-399 93-357 (364)
175 KOG1587 Cytoplasmic dynein int 99.7 8.4E-16 1.8E-20 150.9 26.4 260 179-469 221-518 (555)
176 KOG4227 WD40 repeat protein [G 99.7 2.7E-16 5.8E-21 140.4 20.4 298 150-467 48-387 (609)
177 KOG0303 Actin-binding protein 99.7 1.2E-16 2.7E-21 142.7 18.2 208 152-410 75-296 (472)
178 COG2319 FOG: WD40 repeat [Gene 99.7 1.6E-14 3.5E-19 144.2 35.1 307 150-506 100-429 (466)
179 KOG1963 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 149.2 25.4 335 149-506 48-526 (792)
180 KOG1310 WD40 repeat protein [G 99.7 2.4E-16 5.1E-21 146.6 18.5 212 150-364 42-305 (758)
181 KOG1524 WD40 repeat-containing 99.7 3.3E-16 7.1E-21 145.3 18.5 257 156-465 12-284 (737)
182 KOG1587 Cytoplasmic dynein int 99.7 1.2E-15 2.7E-20 149.8 23.6 252 152-409 236-517 (555)
183 KOG0290 Conserved WD40 repeat- 99.7 4.6E-15 1E-19 127.6 22.5 249 151-411 38-321 (364)
184 KOG1538 Uncharacterized conser 99.7 1.5E-15 3.3E-20 144.4 21.4 264 160-468 14-294 (1081)
185 KOG1007 WD repeat protein TSSC 99.7 1.3E-15 2.8E-20 130.8 18.9 252 148-409 53-362 (370)
186 KOG1188 WD40 repeat protein [G 99.7 3.4E-16 7.3E-21 137.6 14.9 247 150-408 62-346 (376)
187 KOG1517 Guanine nucleotide bin 99.7 1.6E-15 3.5E-20 151.5 21.2 273 203-510 1069-1372(1387)
188 KOG1240 Protein kinase contain 99.7 2.4E-15 5.2E-20 152.5 22.8 271 190-472 1038-1339(1431)
189 KOG0303 Actin-binding protein 99.7 8.6E-16 1.9E-20 137.4 16.9 197 248-470 76-297 (472)
190 KOG0650 WD40 repeat nucleolar 99.7 4.2E-15 9.1E-20 139.8 21.5 234 194-467 394-680 (733)
191 KOG1963 WD40 repeat protein [G 99.7 3.3E-14 7.2E-19 140.1 27.5 291 155-469 202-540 (792)
192 KOG0322 G-protein beta subunit 99.7 2.1E-15 4.5E-20 128.0 16.4 241 192-466 6-322 (323)
193 KOG2111 Uncharacterized conser 99.7 2.8E-13 6E-18 118.5 29.3 228 161-411 8-259 (346)
194 KOG2110 Uncharacterized conser 99.7 4.4E-14 9.5E-19 125.8 24.4 228 206-470 13-251 (391)
195 KOG1409 Uncharacterized conser 99.7 9E-15 2E-19 128.8 19.6 245 150-409 16-271 (404)
196 KOG0642 Cell-cycle nuclear pro 99.6 2.7E-15 5.8E-20 140.4 13.9 214 148-380 334-573 (577)
197 KOG1523 Actin-related protein 99.6 8.5E-14 1.8E-18 121.6 21.4 232 152-399 4-269 (361)
198 KOG1538 Uncharacterized conser 99.6 1.3E-14 2.7E-19 138.3 17.1 232 149-408 44-293 (1081)
199 PRK11028 6-phosphogluconolacto 99.6 9.1E-13 2E-17 126.6 30.1 267 173-467 5-304 (330)
200 KOG1009 Chromatin assembly com 99.6 3.2E-14 6.9E-19 128.1 16.4 230 119-364 29-374 (434)
201 KOG0771 Prolactin regulatory e 99.6 3.8E-14 8.2E-19 128.5 15.0 191 162-364 148-356 (398)
202 KOG1445 Tumor-specific antigen 99.6 5.5E-14 1.2E-18 133.2 16.2 236 206-471 587-848 (1012)
203 KOG2394 WD40 protein DMR-N9 [G 99.6 3E-13 6.5E-18 126.1 20.6 213 160-390 125-384 (636)
204 PRK01742 tolB translocation pr 99.6 2.7E-13 5.8E-18 134.4 21.7 225 144-391 190-426 (429)
205 KOG0644 Uncharacterized conser 99.6 3.1E-15 6.7E-20 145.9 6.8 260 191-506 181-455 (1113)
206 KOG0771 Prolactin regulatory e 99.6 5.1E-14 1.1E-18 127.7 13.7 189 201-409 147-355 (398)
207 KOG1310 WD40 repeat protein [G 99.6 3.8E-14 8.2E-19 132.2 13.0 229 245-477 42-313 (758)
208 KOG1272 WD40-repeat-containing 99.5 1.8E-14 4E-19 131.7 9.7 224 201-466 132-361 (545)
209 KOG3881 Uncharacterized conser 99.5 6.7E-13 1.5E-17 119.2 19.3 240 154-410 51-322 (412)
210 KOG1272 WD40-repeat-containing 99.5 1.6E-14 3.5E-19 132.1 8.9 223 159-406 130-360 (545)
211 KOG4227 WD40 repeat protein [G 99.5 6.6E-13 1.4E-17 119.0 17.1 318 73-408 17-387 (609)
212 KOG2321 WD40 repeat protein [G 99.5 1.5E-12 3.2E-17 122.5 19.6 260 202-507 55-331 (703)
213 PRK11028 6-phosphogluconolacto 99.5 2.3E-11 5.1E-16 116.8 28.3 239 158-409 34-305 (330)
214 KOG3881 Uncharacterized conser 99.5 4.5E-12 9.7E-17 114.0 20.5 205 249-476 101-329 (412)
215 KOG0974 WD-repeat protein WDR6 99.5 1.4E-12 3.1E-17 131.0 19.0 266 159-468 8-289 (967)
216 KOG1334 WD40 repeat protein [G 99.5 8.6E-13 1.9E-17 121.7 15.2 294 193-514 135-461 (559)
217 KOG2321 WD40 repeat protein [G 99.5 2.6E-11 5.7E-16 114.3 23.1 283 156-479 49-355 (703)
218 TIGR03300 assembly_YfgL outer 99.5 6.8E-11 1.5E-15 115.8 27.4 264 170-474 65-345 (377)
219 KOG2111 Uncharacterized conser 99.4 8.1E-11 1.8E-15 103.3 22.8 235 204-471 11-260 (346)
220 KOG1524 WD40 repeat-containing 99.4 1.5E-12 3.2E-17 121.4 12.5 182 151-360 97-284 (737)
221 KOG1523 Actin-related protein 99.4 8.7E-11 1.9E-15 103.1 21.3 199 202-410 14-238 (361)
222 PF02239 Cytochrom_D1: Cytochr 99.4 6.2E-10 1.3E-14 106.8 29.2 298 171-513 6-339 (369)
223 KOG4497 Uncharacterized conser 99.4 8.7E-11 1.9E-15 103.4 19.6 303 163-512 13-425 (447)
224 PRK03629 tolB translocation pr 99.4 2E-10 4.4E-15 113.6 24.6 214 152-390 192-427 (429)
225 KOG2139 WD40 repeat protein [G 99.4 9.1E-10 2E-14 98.4 24.5 246 159-409 99-384 (445)
226 TIGR03300 assembly_YfgL outer 99.3 1.3E-09 2.8E-14 106.9 28.5 259 169-464 104-376 (377)
227 PF12937 F-box-like: F-box-lik 99.3 9.4E-13 2E-17 85.1 4.2 45 64-108 1-45 (47)
228 PRK01742 tolB translocation pr 99.3 1E-10 2.2E-15 116.1 20.4 205 219-467 183-401 (429)
229 PF02239 Cytochrom_D1: Cytochr 99.3 2.1E-09 4.5E-14 103.3 28.4 288 150-476 28-356 (369)
230 KOG1354 Serine/threonine prote 99.3 7.7E-10 1.7E-14 98.1 21.1 247 157-410 24-361 (433)
231 KOG0974 WD-repeat protein WDR6 99.3 4.3E-10 9.2E-15 113.6 21.9 188 164-365 93-291 (967)
232 KOG1064 RAVE (regulator of V-A 99.3 3.4E-11 7.4E-16 127.2 13.8 183 202-411 2210-2401(2439)
233 PRK04922 tolB translocation pr 99.3 7.5E-10 1.6E-14 110.1 22.6 215 151-390 196-432 (433)
234 KOG4547 WD40 repeat-containing 99.3 6.2E-10 1.4E-14 105.8 20.5 205 168-409 3-221 (541)
235 KOG0309 Conserved WD40 repeat- 99.3 4.6E-11 9.9E-16 115.8 12.7 286 158-469 24-341 (1081)
236 PRK02889 tolB translocation pr 99.3 1.2E-09 2.7E-14 108.2 23.0 217 151-390 188-424 (427)
237 KOG0280 Uncharacterized conser 99.3 8.6E-10 1.9E-14 95.9 18.3 237 158-409 69-334 (339)
238 KOG2139 WD40 repeat protein [G 99.2 1.7E-09 3.8E-14 96.6 20.0 235 203-459 103-367 (445)
239 KOG2394 WD40 protein DMR-N9 [G 99.2 2.4E-10 5.1E-15 107.1 15.1 158 159-342 220-384 (636)
240 KOG1064 RAVE (regulator of V-A 99.2 8.4E-11 1.8E-15 124.3 12.5 224 147-401 2197-2439(2439)
241 PRK05137 tolB translocation pr 99.2 4.7E-09 1E-13 104.6 24.4 196 151-364 194-414 (435)
242 KOG4190 Uncharacterized conser 99.2 8.3E-11 1.8E-15 110.4 10.0 204 193-410 728-950 (1034)
243 PRK11138 outer membrane biogen 99.2 1.1E-08 2.3E-13 100.8 25.5 265 170-474 69-360 (394)
244 KOG4190 Uncharacterized conser 99.2 1.6E-10 3.4E-15 108.6 10.9 240 149-406 726-986 (1034)
245 KOG2315 Predicted translation 99.2 2.7E-08 5.9E-13 94.3 25.5 284 158-474 34-397 (566)
246 PRK03629 tolB translocation pr 99.1 2.8E-08 6.1E-13 98.5 25.7 206 221-468 180-407 (429)
247 KOG1409 Uncharacterized conser 99.1 5.1E-09 1.1E-13 93.1 17.3 196 155-364 65-272 (404)
248 PRK11138 outer membrane biogen 99.1 6.1E-08 1.3E-12 95.4 27.3 260 170-466 120-393 (394)
249 PRK05137 tolB translocation pr 99.1 3.6E-08 7.7E-13 98.3 25.8 207 221-469 183-414 (435)
250 TIGR02800 propeller_TolB tol-p 99.1 1.8E-08 3.9E-13 100.4 23.1 194 151-361 182-396 (417)
251 KOG4497 Uncharacterized conser 99.1 5.8E-08 1.3E-12 86.0 22.7 264 158-460 48-425 (447)
252 KOG4714 Nucleoporin [Nuclear s 99.1 2.9E-09 6.3E-14 91.0 13.7 200 254-465 92-316 (319)
253 PF08662 eIF2A: Eukaryotic tra 99.1 1.7E-08 3.7E-13 87.8 19.0 108 252-364 58-181 (194)
254 COG5354 Uncharacterized protei 99.1 2.3E-07 4.9E-12 87.1 27.0 294 158-511 71-421 (561)
255 KOG1354 Serine/threonine prote 99.1 8.3E-09 1.8E-13 91.7 16.7 254 204-471 31-363 (433)
256 PRK00178 tolB translocation pr 99.1 6.3E-08 1.4E-12 96.7 25.3 215 151-390 191-427 (430)
257 PF13360 PQQ_2: PQQ-like domai 99.1 1.8E-07 3.9E-12 85.4 26.0 214 178-413 1-235 (238)
258 PF08662 eIF2A: Eukaryotic tra 99.1 4.5E-09 9.7E-14 91.5 14.0 117 324-468 51-180 (194)
259 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.3E-06 2.8E-11 82.1 30.5 263 180-475 27-338 (352)
260 PRK04922 tolB translocation pr 99.0 6.1E-08 1.3E-12 96.5 22.2 207 220-468 184-412 (433)
261 PRK04792 tolB translocation pr 99.0 1.7E-07 3.6E-12 93.4 24.1 214 152-390 211-446 (448)
262 PF10282 Lactonase: Lactonase, 99.0 4.9E-06 1.1E-10 80.2 33.1 273 173-467 2-322 (345)
263 KOG4547 WD40 repeat-containing 99.0 6.3E-08 1.4E-12 92.5 19.0 179 264-469 6-222 (541)
264 PF13360 PQQ_2: PQQ-like domai 99.0 4.3E-07 9.4E-12 82.8 24.0 216 219-472 2-235 (238)
265 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.9E-06 4.2E-11 81.0 28.4 224 166-412 53-334 (352)
266 KOG0280 Uncharacterized conser 99.0 2.7E-08 5.8E-13 86.8 14.7 190 161-362 124-333 (339)
267 KOG2314 Translation initiation 99.0 6.8E-07 1.5E-11 84.8 24.9 306 162-511 214-559 (698)
268 KOG4532 WD40-like repeat conta 98.9 2E-07 4.4E-12 80.3 18.9 193 206-411 80-285 (344)
269 TIGR02800 propeller_TolB tol-p 98.9 5.6E-07 1.2E-11 89.7 24.1 154 247-409 183-355 (417)
270 PRK02889 tolB translocation pr 98.9 5.8E-07 1.3E-11 89.3 23.1 156 248-410 190-362 (427)
271 KOG1912 WD40 repeat protein [G 98.9 2.5E-06 5.5E-11 84.3 26.4 115 346-480 439-564 (1062)
272 KOG2041 WD40 repeat protein [G 98.8 4.2E-07 9.2E-12 88.7 20.0 213 158-390 14-318 (1189)
273 KOG1275 PAB-dependent poly(A) 98.8 3.4E-08 7.3E-13 98.8 12.7 179 262-465 146-340 (1118)
274 KOG4714 Nucleoporin [Nuclear s 98.8 7.6E-08 1.7E-12 82.5 12.7 243 150-406 27-316 (319)
275 PLN02919 haloacid dehalogenase 98.8 7.2E-06 1.6E-10 89.6 31.0 245 162-411 571-891 (1057)
276 PF10282 Lactonase: Lactonase, 98.8 2E-05 4.3E-10 75.9 30.5 242 158-408 36-322 (345)
277 PF00400 WD40: WD domain, G-be 98.8 1.9E-08 4.1E-13 62.2 6.2 37 150-186 3-39 (39)
278 COG5354 Uncharacterized protei 98.8 1.1E-06 2.4E-11 82.6 20.3 296 156-506 30-376 (561)
279 cd00216 PQQ_DH Dehydrogenases 98.8 6E-06 1.3E-10 83.4 27.2 277 170-475 61-432 (488)
280 KOG1275 PAB-dependent poly(A) 98.8 1.4E-07 3E-12 94.5 14.8 180 169-362 146-342 (1118)
281 smart00256 FBOX A Receptor for 98.8 8.1E-09 1.7E-13 64.8 3.9 40 67-106 1-40 (41)
282 PF00646 F-box: F-box domain; 98.8 5E-09 1.1E-13 68.2 3.0 45 64-108 3-47 (48)
283 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.4E-12 86.7 12.4 147 263-417 74-232 (390)
284 COG4946 Uncharacterized protei 98.7 2.8E-05 6.1E-10 72.8 27.2 172 300-511 330-510 (668)
285 COG5170 CDC55 Serine/threonine 98.7 1.2E-07 2.5E-12 83.4 10.6 291 157-510 25-358 (460)
286 PLN02919 haloacid dehalogenase 98.7 1.7E-05 3.8E-10 86.7 29.8 263 205-471 574-892 (1057)
287 COG2706 3-carboxymuconate cycl 98.7 5.6E-05 1.2E-09 68.7 27.6 251 147-409 28-322 (346)
288 PRK01029 tolB translocation pr 98.7 5.9E-06 1.3E-10 81.7 23.6 219 152-390 178-424 (428)
289 KOG3914 WD repeat protein WDR4 98.7 3.3E-07 7.2E-12 83.6 13.1 153 161-327 65-231 (390)
290 PF04762 IKI3: IKI3 family; I 98.7 8.5E-05 1.9E-09 79.9 33.2 305 156-469 73-458 (928)
291 COG2706 3-carboxymuconate cycl 98.7 7.6E-05 1.7E-09 67.9 27.7 266 179-468 15-322 (346)
292 PRK00178 tolB translocation pr 98.7 9.6E-06 2.1E-10 81.0 24.9 155 247-410 192-365 (430)
293 KOG0309 Conserved WD40 repeat- 98.7 1.3E-07 2.7E-12 92.6 10.1 213 151-409 107-340 (1081)
294 KOG2695 WD40 repeat protein [G 98.6 1.4E-07 2.9E-12 84.3 8.9 135 214-364 228-378 (425)
295 KOG2695 WD40 repeat protein [G 98.6 5.2E-08 1.1E-12 86.9 6.2 155 300-475 223-384 (425)
296 KOG4532 WD40-like repeat conta 98.6 7.9E-06 1.7E-10 70.8 19.0 191 262-473 83-288 (344)
297 COG4946 Uncharacterized protei 98.6 0.00015 3.3E-09 68.1 28.3 165 169-350 331-506 (668)
298 PRK04792 tolB translocation pr 98.6 1.9E-05 4.1E-10 78.8 24.3 153 249-410 213-384 (448)
299 KOG1912 WD40 repeat protein [G 98.6 2.5E-06 5.5E-11 84.2 17.3 232 158-411 15-307 (1062)
300 KOG2066 Vacuolar assembly/sort 98.6 1.2E-06 2.6E-11 87.0 14.3 150 253-415 39-194 (846)
301 KOG2315 Predicted translation 98.6 2.4E-05 5.3E-10 74.8 21.6 225 162-409 129-391 (566)
302 PF08450 SGL: SMP-30/Gluconola 98.5 0.0004 8.7E-09 63.5 29.4 206 163-389 4-233 (246)
303 KOG2314 Translation initiation 98.5 1.6E-05 3.5E-10 75.8 19.6 239 160-408 251-573 (698)
304 KOG2066 Vacuolar assembly/sort 98.5 3.9E-06 8.4E-11 83.5 16.3 182 158-364 39-235 (846)
305 PRK04043 tolB translocation pr 98.5 6.4E-05 1.4E-09 74.0 24.6 188 160-364 189-402 (419)
306 PF00400 WD40: WD domain, G-be 98.5 4.4E-07 9.5E-12 56.0 5.8 38 322-360 2-39 (39)
307 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.0002 4.3E-09 62.2 23.3 272 170-469 63-353 (354)
308 KOG3621 WD40 repeat-containing 98.5 4.3E-05 9.4E-10 75.3 21.4 156 159-322 34-200 (726)
309 KOG2041 WD40 repeat protein [G 98.4 6E-06 1.3E-10 80.9 14.6 204 204-409 20-248 (1189)
310 KOG1645 RING-finger-containing 98.4 1.8E-05 3.9E-10 72.6 16.5 237 151-408 186-461 (463)
311 KOG0882 Cyclophilin-related pe 98.4 2.3E-06 5.1E-11 79.2 10.8 265 198-473 7-311 (558)
312 PRK01029 tolB translocation pr 98.4 8.4E-05 1.8E-09 73.6 22.7 198 251-470 182-406 (428)
313 PF15492 Nbas_N: Neuroblastoma 98.4 0.00021 4.6E-09 63.1 20.9 188 159-364 44-261 (282)
314 KOG0882 Cyclophilin-related pe 98.3 1.4E-05 3E-10 74.2 12.7 216 252-478 8-242 (558)
315 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00077 1.7E-08 58.6 22.1 218 166-410 101-353 (354)
316 KOG1832 HIV-1 Vpr-binding prot 98.3 6E-07 1.3E-11 89.8 3.9 188 150-364 1093-1293(1516)
317 KOG2997 F-box protein FBX9 [Ge 98.3 4.5E-07 9.6E-12 80.4 2.6 76 64-139 107-188 (366)
318 KOG2114 Vacuolar assembly/sort 98.3 0.00012 2.5E-09 73.9 19.3 194 160-364 27-245 (933)
319 KOG2114 Vacuolar assembly/sort 98.2 0.0005 1.1E-08 69.6 23.1 189 202-410 27-245 (933)
320 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0026 5.6E-08 64.7 28.3 186 170-366 69-337 (527)
321 PF04762 IKI3: IKI3 family; I 98.2 0.0033 7.2E-08 68.0 29.6 238 156-409 118-457 (928)
322 cd00216 PQQ_DH Dehydrogenases 98.2 0.0014 3E-08 66.4 25.4 232 171-415 111-431 (488)
323 PF08450 SGL: SMP-30/Gluconola 98.1 0.0077 1.7E-07 55.1 30.3 183 206-408 7-213 (246)
324 PF07433 DUF1513: Protein of u 98.1 0.0021 4.5E-08 58.7 21.6 192 151-356 49-279 (305)
325 PF15492 Nbas_N: Neuroblastoma 98.1 0.003 6.5E-08 56.1 21.7 99 254-353 44-168 (282)
326 PF03178 CPSF_A: CPSF A subuni 98.0 0.0069 1.5E-07 57.9 25.9 216 181-405 3-262 (321)
327 PF00780 CNH: CNH domain; Int 98.0 0.013 2.8E-07 54.7 27.2 228 169-410 6-257 (275)
328 KOG1645 RING-finger-containing 98.0 0.00041 8.8E-09 64.0 16.0 153 182-349 175-347 (463)
329 PF04053 Coatomer_WDAD: Coatom 98.0 0.0024 5.3E-08 62.8 22.6 226 202-472 36-267 (443)
330 KOG1920 IkappaB kinase complex 98.0 0.0025 5.4E-08 67.2 23.1 205 158-364 68-324 (1265)
331 PRK04043 tolB translocation pr 97.9 0.013 2.9E-07 57.8 26.8 143 204-364 193-359 (419)
332 PF11768 DUF3312: Protein of u 97.9 0.00024 5.2E-09 69.1 14.1 77 156-232 257-333 (545)
333 PF07433 DUF1513: Protein of u 97.9 0.022 4.8E-07 52.2 26.5 219 163-403 9-280 (305)
334 KOG2120 SCF ubiquitin ligase, 97.8 1.3E-05 2.9E-10 71.1 3.1 44 64-107 98-141 (419)
335 PF04841 Vps16_N: Vps16, N-ter 97.8 0.03 6.5E-07 55.2 26.5 206 181-406 62-285 (410)
336 PF08596 Lgl_C: Lethal giant l 97.8 0.006 1.3E-07 59.2 21.1 199 160-364 3-292 (395)
337 PHA02713 hypothetical protein; 97.8 0.0032 7E-08 64.7 20.2 214 180-409 272-534 (557)
338 KOG1008 Uncharacterized conser 97.8 1.6E-05 3.4E-10 77.3 3.1 242 158-408 56-335 (783)
339 KOG4441 Proteins containing BT 97.7 0.0037 8E-08 64.1 20.0 225 169-409 284-547 (571)
340 PF00780 CNH: CNH domain; Int 97.7 0.026 5.6E-07 52.6 24.1 221 207-474 4-262 (275)
341 PF03178 CPSF_A: CPSF A subuni 97.7 0.026 5.7E-07 53.9 24.5 132 273-409 62-203 (321)
342 KOG1832 HIV-1 Vpr-binding prot 97.7 3.8E-05 8.1E-10 77.4 4.0 191 192-413 1093-1296(1516)
343 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0046 1E-07 47.0 14.1 96 256-357 2-109 (111)
344 PF11768 DUF3312: Protein of u 97.6 0.00043 9.3E-09 67.4 10.2 89 313-409 238-330 (545)
345 smart00320 WD40 WD40 repeats. 97.6 0.00016 3.4E-09 43.7 4.9 37 150-186 4-40 (40)
346 PF08596 Lgl_C: Lethal giant l 97.6 0.022 4.8E-07 55.4 21.7 249 204-506 7-323 (395)
347 PF04053 Coatomer_WDAD: Coatom 97.5 0.022 4.9E-07 56.1 20.9 223 151-409 25-263 (443)
348 KOG4441 Proteins containing BT 97.5 0.012 2.7E-07 60.3 19.4 226 209-469 284-548 (571)
349 PHA02713 hypothetical protein; 97.5 0.018 3.9E-07 59.3 20.3 188 261-470 302-536 (557)
350 PRK02888 nitrous-oxide reducta 97.4 0.014 3E-07 58.7 18.4 160 300-469 202-406 (635)
351 KOG3617 WD40 and TPR repeat-co 97.4 0.0014 3E-08 66.3 11.4 107 162-282 19-132 (1416)
352 PF06433 Me-amine-dh_H: Methyl 97.4 0.11 2.3E-06 48.5 23.4 271 180-476 17-329 (342)
353 COG5276 Uncharacterized conser 97.4 0.085 1.8E-06 47.4 30.1 276 159-467 87-369 (370)
354 PRK02888 nitrous-oxide reducta 97.4 0.077 1.7E-06 53.6 23.2 179 166-363 200-405 (635)
355 COG5170 CDC55 Serine/threonine 97.4 0.00065 1.4E-08 60.4 7.7 238 252-507 25-298 (460)
356 KOG1920 IkappaB kinase complex 97.4 0.11 2.3E-06 55.6 24.3 190 201-409 69-323 (1265)
357 KOG1008 Uncharacterized conser 97.4 7.3E-05 1.6E-09 72.9 1.6 194 253-468 56-276 (783)
358 KOG3926 F-box proteins [Amino 97.4 0.00013 2.8E-09 63.4 2.8 78 61-138 199-277 (332)
359 KOG3621 WD40 repeat-containing 97.3 0.0011 2.4E-08 65.7 9.2 114 295-409 38-155 (726)
360 PF08553 VID27: VID27 cytoplas 97.3 0.0058 1.3E-07 63.7 14.2 135 177-319 501-647 (794)
361 PF06433 Me-amine-dh_H: Methyl 97.3 0.16 3.5E-06 47.4 22.1 190 164-364 100-322 (342)
362 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.054 1.2E-06 41.3 14.7 97 161-276 2-109 (111)
363 PF08553 VID27: VID27 cytoplas 97.1 0.011 2.4E-07 61.6 14.7 136 211-361 494-646 (794)
364 smart00320 WD40 WD40 repeats. 97.1 0.0018 3.9E-08 38.7 5.2 37 323-360 4-40 (40)
365 KOG3617 WD40 and TPR repeat-co 97.0 0.017 3.7E-07 58.8 13.9 68 161-228 62-131 (1416)
366 PF05096 Glu_cyclase_2: Glutam 96.9 0.31 6.8E-06 43.8 24.0 178 161-352 47-250 (264)
367 PF06977 SdiA-regulated: SdiA- 96.9 0.32 7E-06 43.9 22.3 200 152-359 15-247 (248)
368 KOG4341 F-box protein containi 96.8 0.00056 1.2E-08 64.0 1.9 44 64-107 72-115 (483)
369 PF05096 Glu_cyclase_2: Glutam 96.8 0.4 8.6E-06 43.2 23.1 176 208-396 54-249 (264)
370 PHA03098 kelch-like protein; P 96.7 0.2 4.3E-06 51.8 19.7 184 169-364 294-513 (534)
371 KOG1897 Damage-specific DNA bi 96.7 1.1 2.3E-05 47.4 27.5 303 158-506 530-885 (1096)
372 PF02897 Peptidase_S9_N: Proly 96.7 0.78 1.7E-05 45.6 27.4 231 160-410 125-406 (414)
373 KOG2079 Vacuolar assembly/sort 96.6 0.021 4.5E-07 59.9 11.5 68 158-227 130-202 (1206)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.34 7.3E-06 49.5 20.3 105 262-366 68-193 (527)
375 KOG2079 Vacuolar assembly/sort 96.5 0.008 1.7E-07 62.8 7.8 107 293-407 90-202 (1206)
376 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0091 2E-07 37.8 5.3 34 158-192 11-44 (47)
377 COG3391 Uncharacterized conser 96.5 1 2.2E-05 44.2 23.9 188 162-364 77-285 (381)
378 PF04841 Vps16_N: Vps16, N-ter 96.4 1.1 2.4E-05 44.2 24.3 144 254-408 81-246 (410)
379 KOG4640 Anaphase-promoting com 96.3 0.024 5.1E-07 56.0 9.4 73 158-231 20-95 (665)
380 COG5276 Uncharacterized conser 96.3 0.76 1.7E-05 41.5 21.6 120 286-410 80-201 (370)
381 PHA02790 Kelch-like protein; P 96.3 0.29 6.3E-06 49.6 17.8 182 169-364 271-472 (480)
382 PHA03098 kelch-like protein; P 96.3 0.23 5E-06 51.3 17.5 189 205-409 290-512 (534)
383 KOG2444 WD40 repeat protein [G 96.3 0.0078 1.7E-07 51.8 5.3 138 265-409 32-178 (238)
384 KOG2395 Protein involved in va 96.2 0.081 1.8E-06 51.3 12.1 135 173-319 349-500 (644)
385 KOG4640 Anaphase-promoting com 96.2 0.02 4.3E-07 56.5 8.3 85 300-391 30-116 (665)
386 TIGR03074 PQQ_membr_DH membran 96.2 2.2 4.8E-05 45.5 23.6 68 262-329 259-354 (764)
387 TIGR03074 PQQ_membr_DH membran 96.1 2.5 5.4E-05 45.2 24.5 195 170-366 194-481 (764)
388 PHA02790 Kelch-like protein; P 96.0 0.48 1E-05 48.0 17.4 183 208-409 270-471 (480)
389 KOG2444 WD40 repeat protein [G 96.0 0.014 3.1E-07 50.2 5.2 102 262-364 69-179 (238)
390 PF14583 Pectate_lyase22: Olig 95.9 1.8 3.8E-05 41.5 21.2 164 186-365 16-225 (386)
391 COG3386 Gluconolactonase [Carb 95.8 1.7 3.7E-05 40.8 22.3 178 212-408 39-243 (307)
392 COG3490 Uncharacterized protei 95.6 0.74 1.6E-05 41.4 14.4 197 152-361 113-347 (366)
393 COG3823 Glutamine cyclotransfe 95.6 0.7 1.5E-05 39.5 13.6 168 169-350 55-247 (262)
394 PF12894 Apc4_WD40: Anaphase-p 95.6 0.036 7.9E-07 35.1 4.7 31 331-361 10-40 (47)
395 PRK13616 lipoprotein LpqB; Pro 95.5 1.9 4.1E-05 44.7 19.6 69 332-404 496-564 (591)
396 COG0823 TolB Periplasmic compo 95.4 0.88 1.9E-05 45.0 15.9 185 151-351 185-388 (425)
397 KOG1897 Damage-specific DNA bi 95.3 4.3 9.4E-05 43.2 20.6 134 272-409 806-943 (1096)
398 PF05694 SBP56: 56kDa selenium 95.2 2 4.3E-05 41.6 16.8 231 263-507 87-391 (461)
399 PF06977 SdiA-regulated: SdiA- 94.8 3 6.5E-05 37.8 21.9 160 248-408 16-201 (248)
400 COG3490 Uncharacterized protei 94.8 3 6.5E-05 37.7 19.9 225 163-407 72-347 (366)
401 PF14655 RAB3GAP2_N: Rab3 GTPa 94.7 4.6 9.9E-05 39.6 20.4 85 163-261 6-116 (415)
402 KOG2395 Protein involved in va 94.6 0.83 1.8E-05 44.7 12.8 135 266-408 349-500 (644)
403 PF00930 DPPIV_N: Dipeptidyl p 94.4 5.1 0.00011 38.8 24.0 64 167-231 1-74 (353)
404 KOG2280 Vacuolar assembly/sort 94.4 7.2 0.00016 40.3 19.4 51 179-230 63-114 (829)
405 PF06881 Elongin_A: RNA polyme 94.0 0.062 1.3E-06 41.6 3.5 68 64-137 4-71 (109)
406 KOG4499 Ca2+-binding protein R 93.5 2.7 5.7E-05 36.9 12.4 48 337-390 216-263 (310)
407 PF05694 SBP56: 56kDa selenium 93.2 8.8 0.00019 37.4 20.7 95 271-365 220-345 (461)
408 PF14583 Pectate_lyase22: Olig 93.1 8.7 0.00019 36.9 26.5 187 165-364 42-274 (386)
409 PF00930 DPPIV_N: Dipeptidyl p 92.9 9.5 0.00021 36.9 24.8 212 158-398 42-301 (353)
410 PF07569 Hira: TUP1-like enhan 92.8 1.3 2.8E-05 39.4 10.1 35 254-288 13-47 (219)
411 PF12234 Rav1p_C: RAVE protein 92.7 6.2 0.00013 40.8 15.9 104 301-407 40-155 (631)
412 PF10313 DUF2415: Uncharacteri 92.6 0.6 1.3E-05 28.7 5.4 32 159-190 1-35 (43)
413 PF14727 PHTB1_N: PTHB1 N-term 92.6 11 0.00024 37.0 28.7 144 170-318 37-203 (418)
414 PF13013 F-box-like_2: F-box-l 92.3 0.18 3.9E-06 38.6 3.5 33 62-94 20-52 (109)
415 PRK13616 lipoprotein LpqB; Pro 92.3 13 0.00028 38.7 17.9 74 332-408 447-525 (591)
416 PF14781 BBS2_N: Ciliary BBSom 92.1 5.1 0.00011 31.9 12.2 97 265-364 12-127 (136)
417 COG3204 Uncharacterized protei 92.1 9.3 0.0002 34.9 15.6 156 251-409 83-264 (316)
418 COG0823 TolB Periplasmic compo 92.0 4 8.6E-05 40.4 13.4 128 273-409 218-359 (425)
419 PF10313 DUF2415: Uncharacteri 92.0 0.59 1.3E-05 28.7 4.8 32 333-364 1-35 (43)
420 PRK14131 N-acetylneuraminic ac 91.9 13 0.00029 36.3 20.5 15 444-458 339-353 (376)
421 PF10168 Nup88: Nuclear pore c 91.9 20 0.00043 38.2 21.4 35 331-365 145-182 (717)
422 PF08728 CRT10: CRT10; InterP 91.7 13 0.00028 38.9 16.9 107 255-361 102-245 (717)
423 TIGR03548 mutarot_permut cycli 91.7 12 0.00027 35.6 16.4 106 169-285 72-198 (323)
424 TIGR03548 mutarot_permut cycli 91.3 14 0.0003 35.2 21.2 93 261-353 122-233 (323)
425 PF10168 Nup88: Nuclear pore c 91.0 23 0.00051 37.7 18.5 32 252-283 145-181 (717)
426 PRK10115 protease 2; Provision 91.0 25 0.00053 37.6 28.4 192 159-362 127-344 (686)
427 PF14727 PHTB1_N: PTHB1 N-term 90.7 18 0.00039 35.6 25.2 142 210-362 37-204 (418)
428 COG1520 FOG: WD40-like repeat 90.2 19 0.00041 35.1 23.0 181 170-364 68-270 (370)
429 PF02897 Peptidase_S9_N: Proly 90.1 21 0.00046 35.4 24.7 187 204-408 129-357 (414)
430 COG5167 VID27 Protein involved 89.9 4.8 0.0001 39.5 11.1 135 175-319 485-632 (776)
431 PF08728 CRT10: CRT10; InterP 89.8 21 0.00044 37.6 16.3 109 343-466 113-245 (717)
432 PF14761 HPS3_N: Hermansky-Pud 89.8 13 0.00028 32.5 16.0 156 300-467 27-214 (215)
433 COG3823 Glutamine cyclotransfe 89.8 13 0.00027 32.3 13.4 127 269-396 107-247 (262)
434 PLN03215 ascorbic acid mannose 89.4 0.34 7.3E-06 46.3 3.2 37 64-100 4-41 (373)
435 PF07569 Hira: TUP1-like enhan 88.8 2.4 5.1E-05 37.7 8.0 70 340-409 18-96 (219)
436 PF10395 Utp8: Utp8 family; I 88.8 33 0.00071 35.8 16.8 158 158-328 129-314 (670)
437 KOG1900 Nuclear pore complex, 88.6 8.3 0.00018 42.6 12.9 137 269-409 95-273 (1311)
438 PF12234 Rav1p_C: RAVE protein 88.5 10 0.00022 39.3 13.1 116 159-280 30-155 (631)
439 PF14781 BBS2_N: Ciliary BBSom 88.1 12 0.00026 29.9 12.7 109 212-327 12-133 (136)
440 COG3386 Gluconolactonase [Carb 87.7 25 0.00054 33.1 21.9 96 296-398 168-275 (307)
441 KOG2063 Vacuolar assembly/sort 87.6 46 0.001 36.1 18.1 24 167-190 23-46 (877)
442 KOG4460 Nuclear pore complex, 86.9 18 0.00038 36.0 12.8 28 333-360 104-131 (741)
443 COG4590 ABC-type uncharacteriz 86.4 8 0.00017 37.5 10.1 164 151-323 213-390 (733)
444 KOG1900 Nuclear pore complex, 86.4 6.3 0.00014 43.5 10.6 182 157-365 77-275 (1311)
445 KOG3616 Selective LIM binding 86.4 21 0.00046 37.0 13.5 165 157-322 13-196 (1636)
446 COG3391 Uncharacterized conser 86.3 35 0.00076 33.4 26.2 231 160-410 32-285 (381)
447 PF14870 PSII_BNR: Photosynthe 86.3 29 0.00064 32.5 31.2 229 157-404 15-257 (302)
448 PF14655 RAB3GAP2_N: Rab3 GTPa 86.3 6.4 0.00014 38.6 9.9 79 152-230 301-400 (415)
449 PLN02153 epithiospecifier prot 85.8 34 0.00075 32.8 21.2 61 169-230 32-111 (341)
450 TIGR03547 muta_rot_YjhT mutatr 85.7 35 0.00076 32.8 20.3 42 311-353 168-210 (346)
451 KOG1916 Nuclear protein, conta 84.9 2 4.3E-05 45.1 5.8 177 310-513 110-294 (1283)
452 COG5167 VID27 Protein involved 84.6 25 0.00055 34.8 12.7 133 267-408 484-632 (776)
453 COG3204 Uncharacterized protei 84.3 34 0.00073 31.5 18.8 124 152-281 79-210 (316)
454 TIGR03547 muta_rot_YjhT mutatr 84.3 41 0.00088 32.4 21.1 62 169-230 17-95 (346)
455 PF15390 DUF4613: Domain of un 84.1 52 0.0011 33.5 15.8 146 253-409 19-187 (671)
456 PF07995 GSDH: Glucose / Sorbo 83.6 18 0.0004 34.6 11.7 55 334-390 3-58 (331)
457 PLN02153 epithiospecifier prot 83.1 45 0.00098 32.0 21.4 103 261-364 31-169 (341)
458 PF10433 MMS1_N: Mono-function 82.5 62 0.0013 33.2 21.0 231 208-471 220-480 (504)
459 PLN02193 nitrile-specifier pro 82.2 61 0.0013 32.9 20.2 148 169-325 175-357 (470)
460 KOG1898 Splicing factor 3b, su 82.1 84 0.0018 34.4 17.4 110 251-362 933-1048(1205)
461 KOG1983 Tomosyn and related SN 81.5 92 0.002 34.9 17.3 31 159-189 36-66 (993)
462 PRK14131 N-acetylneuraminic ac 81.5 56 0.0012 32.0 20.4 62 169-230 38-116 (376)
463 PF08801 Nucleoporin_N: Nup133 81.2 31 0.00067 34.4 12.9 27 442-468 192-220 (422)
464 KOG2714 SETA binding protein S 80.6 59 0.0013 31.6 13.6 32 437-468 428-460 (465)
465 KOG1898 Splicing factor 3b, su 80.4 35 0.00075 37.2 12.7 129 273-408 912-1048(1205)
466 KOG1916 Nuclear protein, conta 79.1 3.6 7.8E-05 43.3 5.3 117 161-286 186-328 (1283)
467 TIGR03606 non_repeat_PQQ dehyd 79.0 39 0.00084 33.8 12.2 60 332-392 29-90 (454)
468 TIGR02276 beta_rpt_yvtn 40-res 79.0 8.6 0.00019 23.2 5.3 29 300-328 1-31 (42)
469 KOG2377 Uncharacterized conser 78.8 46 0.00099 32.6 12.0 148 302-469 34-187 (657)
470 PF08801 Nucleoporin_N: Nup133 78.8 73 0.0016 31.7 16.0 32 333-364 190-221 (422)
471 PRK13684 Ycf48-like protein; P 78.5 65 0.0014 30.9 29.7 109 292-404 172-284 (334)
472 smart00564 PQQ beta-propeller 78.3 7.7 0.00017 21.9 4.6 26 263-288 6-31 (33)
473 KOG3630 Nuclear pore complex, 76.8 38 0.00083 37.2 11.9 120 266-390 117-253 (1405)
474 PF12341 DUF3639: Protein of u 76.3 7.7 0.00017 21.2 3.7 26 381-406 2-27 (27)
475 PF14779 BBS1: Ciliary BBSome 75.5 64 0.0014 29.3 16.8 65 252-316 175-255 (257)
476 PF14761 HPS3_N: Hermansky-Pud 75.2 57 0.0012 28.6 16.4 148 258-407 22-213 (215)
477 PF01011 PQQ: PQQ enzyme repea 74.5 8.4 0.00018 22.9 4.1 25 266-290 3-27 (38)
478 PF11715 Nup160: Nucleoporin N 74.2 14 0.0003 38.4 8.3 83 208-290 156-257 (547)
479 smart00564 PQQ beta-propeller 73.9 9.2 0.0002 21.6 4.1 26 170-195 6-31 (33)
480 KOG4408 Putative Mg2+ and Co2+ 73.0 0.58 1.3E-05 42.9 -1.8 49 64-112 8-56 (386)
481 PF11715 Nup160: Nucleoporin N 72.9 8.1 0.00018 40.1 6.3 39 159-197 215-257 (547)
482 PF14269 Arylsulfotran_2: Aryl 72.4 87 0.0019 29.5 15.0 67 161-227 146-219 (299)
483 KOG2247 WD40 repeat-containing 72.4 0.55 1.2E-05 45.5 -2.2 133 262-403 45-183 (615)
484 TIGR02604 Piru_Ver_Nterm putat 71.9 86 0.0019 30.5 12.8 73 333-407 14-98 (367)
485 PLN02193 nitrile-specifier pro 71.9 1.2E+02 0.0026 30.8 21.2 145 261-410 174-353 (470)
486 TIGR02276 beta_rpt_yvtn 40-res 70.8 16 0.00034 21.9 5.0 31 168-198 1-32 (42)
487 KOG2063 Vacuolar assembly/sort 70.5 1.6E+02 0.0035 32.2 14.8 79 205-285 21-100 (877)
488 KOG4499 Ca2+-binding protein R 70.0 81 0.0017 28.1 17.7 77 334-411 159-244 (310)
489 PF13570 PQQ_3: PQQ-like domai 69.7 11 0.00024 22.6 4.0 22 207-228 18-39 (40)
490 KOG3630 Nuclear pore complex, 69.2 68 0.0015 35.5 11.6 93 256-349 158-260 (1405)
491 COG3292 Predicted periplasmic 68.8 1.4E+02 0.0031 30.4 14.5 105 291-402 163-269 (671)
492 PF14870 PSII_BNR: Photosynthe 68.5 1.1E+02 0.0023 28.9 28.8 144 255-406 63-213 (302)
493 COG4590 ABC-type uncharacteriz 68.3 27 0.00059 34.0 7.9 153 299-471 229-390 (733)
494 PF09372 PRANC: PRANC domain; 68.3 4.6 9.9E-05 30.5 2.4 26 62-87 70-95 (97)
495 KOG1896 mRNA cleavage and poly 67.6 1.2E+02 0.0026 33.9 13.0 138 264-408 1047-1213(1366)
496 PF01436 NHL: NHL repeat; Int 67.1 18 0.0004 19.7 4.1 25 335-359 4-28 (28)
497 KOG1896 mRNA cleavage and poly 66.2 2E+02 0.0044 32.3 14.4 152 211-364 1047-1215(1366)
498 KOG1983 Tomosyn and related SN 65.5 1.4E+02 0.0031 33.4 13.9 30 198-227 35-64 (993)
499 PF01011 PQQ: PQQ enzyme repea 64.3 21 0.00045 21.2 4.3 27 172-198 2-28 (38)
500 KOG4659 Uncharacterized conser 63.0 2.8E+02 0.006 31.7 15.0 70 250-322 344-430 (1899)
No 1
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-58 Score=401.37 Aligned_cols=410 Identities=20% Similarity=0.282 Sum_probs=349.4
Q ss_pred ccccccchhhHhhhhccccCCCC--ccccccccccccccCCc----HHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCCh
Q 009373 29 SELNNLNFEIEATKSTLESKQLP--CNDVLSNLHRSTITDLP----PALISEILNCLDPKELGIVSCVSPILHRLASDHH 102 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~Lp----~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~ 102 (536)
+-.+.+-..++.|+++.|..|.- -+.+.|.+++||++.|| +++...||+|||+.+||.|..||+.|++++.+..
T Consensus 38 wsE~~qvdfv~~ll~~m~hyq~g~v~n~~rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~ 117 (499)
T KOG0281|consen 38 WSESDQVDFVEHLISRMCHYQHGHINNYLKPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGM 117 (499)
T ss_pred cccccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccch
Confidence 33444456778899999999987 88899999999999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHhH------h-CCCCCC---------CCCCCCCCC----CCCchhhhhhhh-hhccccCCccceeeeeC---cc
Q 009373 103 AWKEFYCER------W-GLPIAS---------APLGAGFSD----DKSWKELFVERE-FRSKTFLGRYSIDVLYG---HT 158 (536)
Q Consensus 103 lW~~~~~~~------~-~~~~~~---------~~~~~~~~~----~~~Wk~~~~~~~-~~~~~~~~~~~~~~l~~---h~ 158 (536)
+||+++.+. | ++...+ .+...+... ...|-..+.+.. +..+|..|++.++.+.. ..
T Consensus 118 ~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~s 197 (499)
T KOG0281|consen 118 LWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENS 197 (499)
T ss_pred HHHHHHHHhcchHHHHhhhhhccCcchhhccCCCCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccC
Confidence 999987652 1 111111 011111222 233544555433 57788899999888875 46
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 238 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 238 (536)
++|+|+.+ |...+++|..|++|+|||..+..++..+.+|++.|+|+..+.+.+++|+.|.+|++||+++++
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge------- 268 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGE------- 268 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCc-------
Confidence 78999998 477899999999999999999999999999999999999999999999999999999998875
Q ss_pred CcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEe---e-eccccEEEEeecCCEEEEec-CCcE
Q 009373 239 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV---L-RHSDWVYGLAPHDTTVASTS-GSDV 313 (536)
Q Consensus 239 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~-~~~~~v~~~~~~~~~l~~~~-d~~i 313 (536)
++.++.+|...|..+.|+.++++++|.|.++.+||+.+...+.. + .|...|+.+..+.+++++++ |.+|
T Consensus 269 ------~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTi 342 (499)
T KOG0281|consen 269 ------PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI 342 (499)
T ss_pred ------hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceE
Confidence 66678899999999999999999999999999999987664332 2 28999999999999999998 8999
Q ss_pred EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeE
Q 009373 314 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWL 393 (536)
Q Consensus 314 ~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l 393 (536)
++|++.+++.++++. +|...|-|+.+ .|+++++|+.|.+|++||+..+ .+++.+.||..-|.++.|+...+
T Consensus 343 kvW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G------~cLRvLeGHEeLvRciRFd~krI 413 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRI 413 (499)
T ss_pred EEEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEecccc------HHHHHHhchHHhhhheeecCcee
Confidence 999999999999996 79999999987 4899999999999999999999 89999999999999999999999
Q ss_pred EEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373 394 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 394 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~ 472 (536)
++|+.||+|+|||+.+...+..+.. .-+...+..|++.|+.+.|+...+++++.|.+|-|||+.++..-
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~----------~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPAS----------TLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eeccccceEEEEecccccCCccccc----------chHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999999998755533322 22345567789999999999999999999999999999987654
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-48 Score=341.54 Aligned_cols=310 Identities=26% Similarity=0.361 Sum_probs=273.8
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 228 (536)
...+.||.++|.|++|+|+|..|+||+.|.++|+||+.+..++.+..+|...|.|++ |||+.|++|+.||+|++||..
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 568899999999999999999999999999999999999999999999999998876 999999999999999999998
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEEe-------CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEee
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD-------LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAP 300 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 300 (536)
++. .....+.+|...|++++|. ..+|++++.||+|+|||+..++++..+. |..+|+|+..
T Consensus 188 tg~------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 188 TGQ------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred CCC------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence 874 3556688999999999993 3689999999999999999999998887 9999999997
Q ss_pred c-CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe-----------CCC-----------------------
Q 009373 301 H-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS-----------HTG----------------------- 344 (536)
Q Consensus 301 ~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~-----------~~~----------------------- 344 (536)
. ..++++++ |++|++|+...|...+.+. +|...|+.++.+ |.+
T Consensus 256 GG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 256 GGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred cCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 7 55778888 9999999999999999886 799999999876 323
Q ss_pred --CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCC
Q 009373 345 --DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGK 420 (536)
Q Consensus 345 --~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 420 (536)
..|++|+.|.++.+|+..... +++..+.+|...|+.+.|+| .+++++|-|..|++||.+++
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------- 399 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------- 399 (480)
T ss_pred CcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc----------
Confidence 359999999999999976653 57888999999999999998 69999999999999999985
Q ss_pred ceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccc
Q 009373 421 RVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMS 498 (536)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (536)
.....+.||-..|..++++.+ +|++|+.|.++++|++.+.+.... +++ ....++.++|+
T Consensus 400 ---------k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D----LpG------h~DEVf~vDws 460 (480)
T KOG0271|consen 400 ---------KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD----LPG------HADEVFAVDWS 460 (480)
T ss_pred ---------chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc----CCC------CCceEEEEEec
Confidence 344567899999999998877 999999999999999998765543 233 23557899999
Q ss_pred cCCCCccee
Q 009373 499 SKGGRTDQC 507 (536)
Q Consensus 499 ~~g~~~~~~ 507 (536)
|||.++++.
T Consensus 461 pDG~rV~sg 469 (480)
T KOG0271|consen 461 PDGQRVASG 469 (480)
T ss_pred CCCceeecC
Confidence 999999975
No 3
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2e-46 Score=368.14 Aligned_cols=412 Identities=25% Similarity=0.348 Sum_probs=350.8
Q ss_pred ccccccccccccchhhHhhhhccccCCCC--ccccccccccccccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcC
Q 009373 23 LQSQIESELNNLNFEIEATKSTLESKQLP--CNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASD 100 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~ 100 (536)
...+.......++..+..++..|+.+++. .+...+..++|||..||.|+..+||.|||+++|+.+++||+.|+.++++
T Consensus 65 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 65 IAQFSSLSEKEKKLLLDRLLDSSGPSQLSELGNLLEPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred eehhcccchhhhceeeeeeccccCchhhhhhhhhcccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhc
Confidence 34355555567778888899999999888 5566899999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhHhCCCCCCC--CC-CCCCCCCCCchhhhhhhhhhccccCC--ccceeeeeC-ccccEEEEEEecCCCEEE
Q 009373 101 HHAWKEFYCERWGLPIASA--PL-GAGFSDDKSWKELFVEREFRSKTFLG--RYSIDVLYG-HTEAVLTVFVLASAKLLF 174 (536)
Q Consensus 101 ~~lW~~~~~~~~~~~~~~~--~~-~~~~~~~~~Wk~~~~~~~~~~~~~~~--~~~~~~l~~-h~~~V~~v~~~~~~~~l~ 174 (536)
+..|.+.+....+...... .. .........||..|.++....++|.. ......+.+ |...|.+..|. +.+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~ 222 (537)
T KOG0274|consen 145 DKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFK 222 (537)
T ss_pred cchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhhccccccccccccceeecccCcchhhhheee--cCeEE
Confidence 9999986555443322111 11 11113457899998887654433322 222345554 67788888887 77899
Q ss_pred EEeCCCcEEEEECCCCceeee-eCCCCceEEEEecC--CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373 175 TSGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 251 (536)
Q Consensus 175 sgs~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (536)
+++.|++|++|+..++..+.. +.+|.+.|.++... ++++++|+.|.++++||..++. +...+.+
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------------C~~~l~g 289 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------------CTHSLQG 289 (537)
T ss_pred ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------------EEEEecC
Confidence 999999999999999999888 99999999999855 8999999999999999998764 8888999
Q ss_pred CccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcc
Q 009373 252 HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG 329 (536)
Q Consensus 252 h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~ 329 (536)
|.+.|.++...+..+++|+.|.+|++|++.++.++..+. |.++|.++..++.++++|+ |++|.+||+.+++++..+.
T Consensus 290 h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~- 368 (537)
T KOG0274|consen 290 HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLS- 368 (537)
T ss_pred CCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeec-
Confidence 999999999999999999999999999999999999999 9999999998899999999 8999999999999999996
Q ss_pred ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCc
Q 009373 330 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 330 ~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~ 409 (536)
+|...|+++.+.+. ..+++|+.|++|++||+++.. .++.++.+|.+.|.++.+..++|++++.|++|++||..+
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-----hhhhhhcCCcccccccccccceeEeccccccEEEeeccc
Confidence 69999999988765 899999999999999998873 588999999999999999999999999999999999988
Q ss_pred ccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHH
Q 009373 410 LLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERR 475 (536)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~ 475 (536)
+ .+.+.+.+ |...+.++......+++++.||.+++||++++......
T Consensus 443 ~-------------------~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 443 G-------------------ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred C-------------------ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 4 34445555 56778888877679999999999999999999988876
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-47 Score=335.46 Aligned_cols=310 Identities=23% Similarity=0.345 Sum_probs=270.1
Q ss_pred HHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 009373 105 KEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRM 184 (536)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~i 184 (536)
..+.|.+|++....+.+.+|+...+.|..... .+..+.+||..-|.|++|+|||+.||+|+.||+|++
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCC------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 35678889877777788888888888876443 367899999999999999999999999999999999
Q ss_pred EECCCCcee-eeeCCCCceEEEEe-------cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCE
Q 009373 185 WHLEDGFSI-ASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI 256 (536)
Q Consensus 185 wd~~~~~~~-~~~~~~~~~v~~~~-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 256 (536)
||.++|+++ ..+.+|...|++++ |..++|++++.||+|+|||+..+ .++..+.+|+.+|
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-------------~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-------------TCVRTLSGHTASV 250 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-------------eEEEEeccCccce
Confidence 999998765 56899999999887 45679999999999999998654 4788899999999
Q ss_pred EEEEEe-CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeec-------------C-------------------
Q 009373 257 TSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPH-------------D------------------- 302 (536)
Q Consensus 257 ~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~-------------~------------------- 302 (536)
+|+.|. .+++++||.|++|++|+...|.+...+. |..+|+.++.+ +
T Consensus 251 TCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 251 TCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 999995 6899999999999999999999999888 88888877622 2
Q ss_pred ------CEEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373 303 ------TTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 374 (536)
Q Consensus 303 ------~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 374 (536)
+.+++|+ |.++.+|+....+ ++..+ .+|...|+.+.|+||++++|+++-|..|++||.+++ +.+.
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG------k~la 403 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG------KFLA 403 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCCCc------chhh
Confidence 3489998 7999999987654 55555 479999999999999999999999999999999999 7899
Q ss_pred eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--
Q 009373 375 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-- 450 (536)
Q Consensus 375 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 450 (536)
++.+|-++|+.++|+. ++|++||.|.+++|||+++. .....+.||...|++++++++
T Consensus 404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-------------------Kl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-------------------KLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee-------------------eecccCCCCCceEEEEEecCCCc
Confidence 9999999999999976 59999999999999999983 333456789999999887665
Q ss_pred EEEEecCCCeEEEEe
Q 009373 451 RIVCGGEEGIVRIWN 465 (536)
Q Consensus 451 ~l~sg~~Dg~i~vW~ 465 (536)
.+++|+.|..+++|.
T Consensus 465 rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 RVASGGKDKVLRLWR 479 (480)
T ss_pred eeecCCCceEEEeec
Confidence 999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=289.42 Aligned_cols=282 Identities=20% Similarity=0.288 Sum_probs=246.9
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~ 228 (536)
.++|+||.+.|+++.|++|+++++++|.||.+.|||.-+......++-....|+.+ +|.+++++.|+.|....||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37999999999999999999999999999999999999988888887777777655 5999999999999999999987
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e-cCC
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HDT 303 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~~ 303 (536)
+.. ..........+.+|++.+.|..| +...|+|+|.|.+..+||+++++.+..+. |.+.|.+++ | +++
T Consensus 128 ~~d-------~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 128 TRD-------AEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred ccc-------ccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 541 11223456678999999999999 88999999999999999999999999998 999999988 6 889
Q ss_pred EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec--cCCC
Q 009373 304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IPHT 380 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~ 380 (536)
.+++|+ |+..++||++.+..+++|. +|...|++++|.|+|.-+++|++|+++++||++... .+..+ ..-.
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~------~~a~ys~~~~~ 273 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ------ELAVYSHDSII 273 (343)
T ss_pred eEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCc------EEeeeccCccc
Confidence 999998 9999999999999999996 799999999999999999999999999999999983 33333 3346
Q ss_pred CCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEec
Q 009373 381 GPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGG 456 (536)
Q Consensus 381 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~ 456 (536)
.+|++++|+ +++|++|..|.++.|||.-.. +....+.||...|.++..+++ -++||+
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-------------------e~vg~L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-------------------ERVGVLAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeecccc-------------------ceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence 689999996 689999999999999998763 333457799998888876555 999999
Q ss_pred CCCeEEEEe
Q 009373 457 EEGIVRIWN 465 (536)
Q Consensus 457 ~Dg~i~vW~ 465 (536)
.|.++|||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-43 Score=314.03 Aligned_cols=274 Identities=22% Similarity=0.340 Sum_probs=250.0
Q ss_pred eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cC--CCEEEEEeCCCcEEEEEcc
Q 009373 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~vwd~~ 228 (536)
.-.|-+.+|..+.|++++..|+|||.+|.++||+..+...+.++.+|...+.++. |. +..+++|+.||++++|++.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 3446788999999999999999999999999999999999999999999887765 54 5689999999999999986
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 303 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 303 (536)
+. .++..+.+|...|..++| +|++|+|++.|.+-++||++++..+...+ |...|.+++ ++|.
T Consensus 250 ~e-------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS 316 (459)
T KOG0272|consen 250 QE-------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS 316 (459)
T ss_pred CC-------------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence 53 367788999999999999 88999999999999999999988776665 999999988 9999
Q ss_pred EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373 304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
++++|+ |..-+|||+++|+++..+. +|..+|.+++|+|+|..||||+.|++++|||++.. ..+.++.+|.+-
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nl 389 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------SELYTIPAHSNL 389 (459)
T ss_pred eeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeeccc------ccceecccccch
Confidence 999999 9999999999999999996 69999999999999999999999999999999998 678999999999
Q ss_pred eEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecC
Q 009373 383 VNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGE 457 (536)
Q Consensus 383 v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~ 457 (536)
|+.+.|+| .+|+|++.|+++++|..++. .+.+.+.||...|++++.+++ +++|++.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-------------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-------------------SPLKSLAGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCc-------------------ccchhhcCCccceEEEEeccCCceEEEecc
Confidence 99999986 79999999999999998884 455668999999999987665 8999999
Q ss_pred CCeEEEEe
Q 009373 458 EGIVRIWN 465 (536)
Q Consensus 458 Dg~i~vW~ 465 (536)
|.++++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999996
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=274.49 Aligned_cols=277 Identities=20% Similarity=0.354 Sum_probs=244.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373 171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 248 (536)
Q Consensus 171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 248 (536)
-+|+|+|+|.+||+|...+|.+..+++.....|.++. |+++.|++++. ..|++||+.++. ..++.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-----------p~Pv~t 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-----------PNPVAT 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-----------CCceeE
Confidence 4899999999999999999999999988888887765 88888888765 579999998864 347889
Q ss_pred eeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcE
Q 009373 249 LWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL 323 (536)
Q Consensus 249 ~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~ 323 (536)
+.+|+..|+++.| +|..+++||+||+++|||++...+.+.+.+..+|+++. |+...|+++. +|.|++||+....+
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 9999999999999 89999999999999999999999999999999999988 7777788887 89999999999877
Q ss_pred EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCc
Q 009373 324 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK 401 (536)
Q Consensus 324 ~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~ 401 (536)
...+.......|.++...|+|.+++++...|.+++|++-.......+.++..++.|.+.+..+.++| .+|+++|.|.+
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 7776655667899999999999999999999999999988877778889999999999999999998 79999999999
Q ss_pred EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHH
Q 009373 402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRAR 477 (536)
Q Consensus 402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~ 477 (536)
++||+.++. ......+.+|...++...|+.+ ||+||+.|+.+++|+++.++++.....
T Consensus 239 v~iwn~~~~------------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 239 VKIWNTDDF------------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred EEEEecCCc------------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 999999874 1223456888888988888766 999999999999999999987765433
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-37 Score=258.70 Aligned_cols=287 Identities=21% Similarity=0.347 Sum_probs=234.8
Q ss_pred ceeeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECC-----CCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCc
Q 009373 150 SIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLE-----DGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGF 221 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~-----~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~ 221 (536)
...+++||++.|+.++..+. ...+++++.|.++.+|++. .|..++.+.+|...|..+ +++|++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 34689999999999999987 5689999999999999875 467788999998888655 499999999999999
Q ss_pred EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEE
Q 009373 222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYG 297 (536)
Q Consensus 222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~ 297 (536)
+++||+.+++ ....+.+|...|.+++| |...+++|+.|++|++|++.......... +.++|.|
T Consensus 87 lrlWDl~~g~-------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 87 LRLWDLATGE-------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred EEEEEecCCc-------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 9999998763 67789999999999999 77899999999999999987554443333 3789999
Q ss_pred Ee--ec--CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373 298 LA--PH--DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 372 (536)
Q Consensus 298 ~~--~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 372 (536)
+. |+ ..++++++ |++|++||+++.+....+. +|.+.++.++++|||.++++|+.||.+.+||++.+ +.
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~------k~ 226 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG------KN 226 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCC------ce
Confidence 88 55 56888888 9999999999999888885 79999999999999999999999999999999998 55
Q ss_pred eeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--C
Q 009373 373 VATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--A 449 (536)
Q Consensus 373 ~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 449 (536)
+..+ +|...|.+++|+| .+.+++..+..|+|||+.+............ .+ ........+++++++ |
T Consensus 227 lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~-------g~---s~~~~~~~clslaws~dG 295 (315)
T KOG0279|consen 227 LYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGI-------GP---SSKAGDPICLSLAWSADG 295 (315)
T ss_pred eEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccc-------cc---ccccCCcEEEEEEEcCCC
Confidence 5554 6889999999999 4555666677799999998654433221110 00 122233445666666 6
Q ss_pred CEEEEecCCCeEEEEeCC
Q 009373 450 DRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 450 ~~l~sg~~Dg~i~vW~~~ 467 (536)
..|.+|-.|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 699999999999999875
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-38 Score=273.73 Aligned_cols=278 Identities=23% Similarity=0.342 Sum_probs=249.8
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 227 (536)
..+.+.||..+|+.+-|+|+-.++++++.|++|++||..+|+....+++|...+..++ ..|+++++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 4678889999999999999999999999999999999999999999999999998877 56889999999999999998
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD 302 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~ 302 (536)
.+. ..+...+.+|...|.++.| .++++++++.|.+|+.|++.++.++.++. |..+|..+. .+|
T Consensus 180 ~~~------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 180 DTF------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHH------------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 653 3466677899999999999 78999999999999999999999999998 888998887 678
Q ss_pred CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC---------------CCEEEEEcCCCcEEEEEcccCcc
Q 009373 303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---------------GDFLFTGGEDGAIHMYEIINDCT 366 (536)
Q Consensus 303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~---------------~~~l~tg~~dg~i~iwd~~~~~~ 366 (536)
.++++++ |.++++|-+.++++...+. .|..+|.+++|.|. ++++++++.|++|++||+.++
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-- 324 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-- 324 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--
Confidence 8889888 8999999999998877775 59999999999873 358999999999999999999
Q ss_pred ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE
Q 009373 367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS 444 (536)
Q Consensus 367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 444 (536)
.++.++.+|...|..++|+| .||+++..|+++++||+++. .+...+..|+.-+.+
T Consensus 325 ----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-------------------~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 325 ----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-------------------QCMKTLEAHEHFVTS 381 (406)
T ss_pred ----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-------------------eeeeccCCCcceeEE
Confidence 89999999999999999995 89999999999999999984 344455667777888
Q ss_pred EEecCC--EEEEecCCCeEEEEe
Q 009373 445 VDIGAD--RIVCGGEEGIVRIWN 465 (536)
Q Consensus 445 ~~~~~~--~l~sg~~Dg~i~vW~ 465 (536)
+++..+ +++||+-|.++++|.
T Consensus 382 lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EecCCCCceEEeccccceeeeee
Confidence 887766 999999999999996
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.8e-39 Score=284.71 Aligned_cols=238 Identities=21% Similarity=0.261 Sum_probs=221.1
Q ss_pred cceeeeeCccccEEEEEEecC--CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEE--EecCCCEEEEEeCCCcEEE
Q 009373 149 YSIDVLYGHTEAVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~--~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~v 224 (536)
..+++|+||++.|.++.|+|. +..+|||+.||+|++|++++..++..+.+|...|.. |+|+|++|+|++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 468999999999999999997 568999999999999999999999999999887754 5599999999999999999
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-- 299 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~-- 299 (536)
||++++. ......||...|.+++| +|..++||+.|..-+|||+++++++..+. |..+|.+++
T Consensus 288 WD~~tk~-------------ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs 354 (459)
T KOG0272|consen 288 WDLETKS-------------ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS 354 (459)
T ss_pred cccccch-------------hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence 9998864 45556799999999999 88999999999999999999999999998 999999988
Q ss_pred ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373 300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 377 (536)
Q Consensus 300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 377 (536)
|+|..+++|+ |++++|||++..+.+.++. +|..-|+.++|+| .|.+|+|++.|++++||..++. .++.++.
T Consensus 355 PNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~------~~~ksLa 427 (459)
T KOG0272|consen 355 PNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW------SPLKSLA 427 (459)
T ss_pred CCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCc------ccchhhc
Confidence 9999999999 9999999999999998886 7999999999999 7889999999999999999888 7899999
Q ss_pred CCCCCeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373 378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLID 406 (536)
Q Consensus 378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 406 (536)
||.+.|.+++.++ .++++++.|.++++|.
T Consensus 428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999986 6899999999999995
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3e-37 Score=269.47 Aligned_cols=288 Identities=21% Similarity=0.339 Sum_probs=243.6
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 227 (536)
..+++.||.+.|.|+++.|.+.+|+||+.|++++|||+.+|+...++.+|-..|..+. +.-.++++++.|+.|++||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 4678999999999999999999999999999999999999999999999998887665 66779999999999999999
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD 302 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~ 302 (536)
+.. +.++.+.||-+.|.+++.. -+.|++|+.|.++++||+++...+..+. |..+|..+. +.+
T Consensus 223 e~n-------------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 223 EYN-------------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred hhh-------------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC
Confidence 764 4777889999999999995 5789999999999999999999999998 999999987 446
Q ss_pred CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
..+++|+ |++|++||++.|+...++. .|...+.+++.+|....+++++.|. |+-|++..+ ..+..+.+|+.
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g------~f~~nlsgh~~ 361 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG------EFLQNLSGHNA 361 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc------chhhccccccc
Confidence 6777777 9999999999999998885 6999999999999999999998885 999999988 67777999999
Q ss_pred CeEEEEEc-CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCC
Q 009373 382 PVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEE 458 (536)
Q Consensus 382 ~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~D 458 (536)
.|++++.. .+++++|+.+|.+.+||.+++..-.... ....+..... +..|++..| ++..|+||..|
T Consensus 362 iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~---------t~vqpGSl~s--EagI~as~fDktg~rlit~ead 430 (460)
T KOG0285|consen 362 IINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ---------TIVQPGSLES--EAGIFASCFDKTGSRLITGEAD 430 (460)
T ss_pred eeeeeeeccCceEEEcCCceEEEEEecCcCccccccc---------ccccCCcccc--ccceeEEeecccCceEEeccCC
Confidence 99999986 4899999999999999999863322111 1111111111 223444444 55699999999
Q ss_pred CeEEEEeCCch
Q 009373 459 GIVRIWNFSQA 469 (536)
Q Consensus 459 g~i~vW~~~~~ 469 (536)
.+|++|.-++.
T Consensus 431 KtIk~~keDe~ 441 (460)
T KOG0285|consen 431 KTIKMYKEDEH 441 (460)
T ss_pred cceEEEecccc
Confidence 99999987654
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.7e-39 Score=281.12 Aligned_cols=250 Identities=22% Similarity=0.330 Sum_probs=226.8
Q ss_pred CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373 146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw 225 (536)
...+..+.|.||++.|.|+.|. .+.+++||.|.+|+|||+++|+++.++-.|...|+.+..+++++++++.|.++.+|
T Consensus 225 n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVW 302 (499)
T KOG0281|consen 225 NSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVW 302 (499)
T ss_pred ccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEE
Confidence 4445788999999999999995 67999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCE
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT 304 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 304 (536)
|+.... .......+.||...|+.+.|+.++++++|.|.+|++|++.+++++.++. |...|.|+...+++
T Consensus 303 dm~sps----------~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rl 372 (499)
T KOG0281|consen 303 DMASPT----------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRL 372 (499)
T ss_pred eccCch----------HHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeE
Confidence 986642 2345566889999999999999999999999999999999999999998 99999999999999
Q ss_pred EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc---cccceeeeccCCC
Q 009373 305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE---ANVLLVATWIPHT 380 (536)
Q Consensus 305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~~~~~~h~ 380 (536)
+++|+ |.+|++||+..|.+++.+. ||..-|.++.|. .+.+++|+.||+|+|||+..+..+ ....++.++..|+
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs 449 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 449 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc
Confidence 99999 9999999999999999986 799999999995 678999999999999999876433 2234677788999
Q ss_pred CCeEEEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373 381 GPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 381 ~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 410 (536)
+.|..+.|+...+++++.|.+|.|||+.++
T Consensus 450 gRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 450 GRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 999999999999999999999999999875
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=264.64 Aligned_cols=286 Identities=17% Similarity=0.235 Sum_probs=254.0
Q ss_pred hhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEe
Q 009373 88 SCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVL 167 (536)
Q Consensus 88 ~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~ 167 (536)
.++.-+-+++++.|. .++++..|+.+.....+.+.+.....|...... +++.+.-....|..++|+
T Consensus 41 ~~i~~~~rr~LkGH~--~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn------------K~haipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 41 GRIQMRTRRTLKGHL--NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN------------KVHAIPLPSSWVMTCAYS 106 (343)
T ss_pred eeeeeeeEEEecccc--cceeeeEecCCcCeEEeeccCCeEEEEEccccc------------ceeEEecCceeEEEEEEC
Confidence 344445668888888 789999999888888888888888889886665 467788888999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC------ceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCc
Q 009373 168 ASAKLLFTSGYDSIVRMWHLEDG------FSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS 240 (536)
Q Consensus 168 ~~~~~l~sgs~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 240 (536)
|+|+++|+|+.|+...||++.+. ...+.+.+|.+.+.|+. .+...|+||+.|.++.+||++++.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~--------- 177 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ--------- 177 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce---------
Confidence 99999999999999999999865 45567899999998887 678899999999999999998874
Q ss_pred ccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcE
Q 009373 241 EKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDV 313 (536)
Q Consensus 241 ~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i 313 (536)
....+.+|.+.|.++++ +++.+++|+.|++.++||++.+.+.++|. |...|+++. |+|.-+++|+ |+++
T Consensus 178 ----~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 178 ----QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred ----EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence 67788999999999999 67899999999999999999999999998 999999998 9999999999 7999
Q ss_pred EEEeCCCCcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--
Q 009373 314 YIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-- 390 (536)
Q Consensus 314 ~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-- 390 (536)
++||++..+.+..+.. ....+|++++|+..|++|++|..|.++.+||.-.+ ..+..+.+|.+.|.+|..+|
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~------e~vg~L~GHeNRvScl~~s~DG 327 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG------ERVGVLAGHENRVSCLGVSPDG 327 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc------ceEEEeeccCCeeEEEEECCCC
Confidence 9999999999988852 23458999999999999999999999999998887 67888999999999999987
Q ss_pred CeEEEEeCCCcEEEEE
Q 009373 391 PWLVSAAGDGKLSLID 406 (536)
Q Consensus 391 ~~l~s~s~dg~i~vwd 406 (536)
.-+++||+|..++||.
T Consensus 328 ~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEecchhHheeecC
Confidence 5899999999999994
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-37 Score=276.91 Aligned_cols=310 Identities=21% Similarity=0.286 Sum_probs=257.1
Q ss_pred eeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCC--ceee--ee----------CCCCceEEE--EecCCCEEE
Q 009373 152 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDG--FSIA--SS----------KPLGCTIRA--VAADKKLLV 214 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~--~~~~--~~----------~~~~~~v~~--~~~~~~~l~ 214 (536)
+.+. |..+|.+++|+|... ++++|+.|-+.++|++... .... .+ ......|++ +..+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4455 999999999999766 9999999999999999741 1111 00 111233444 457799999
Q ss_pred EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-c
Q 009373 215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-H 291 (536)
Q Consensus 215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~ 291 (536)
+|+.||.+++|+.... ...++..|.++|.++.| .|++|++++.||++.+||..++...+.+. |
T Consensus 252 tG~~~G~~riw~~~G~--------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGN--------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred EeecCcEEEEEecCch--------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 9999999999997543 56678889999999999 77899999999999999999999999988 6
Q ss_pred cccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373 292 SDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369 (536)
Q Consensus 292 ~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 369 (536)
..+-..+. .+...+++++ |+.|+|+.+....++.++. +|.++|.++.|+|.|.+|++++.|++++||+....
T Consensus 318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----- 391 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----- 391 (524)
T ss_pred cCCccceEEecCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----
Confidence 66656676 4555566666 9999999999999999997 59999999999999999999999999999998877
Q ss_pred cceeeeccCCCCCeEEEEEcC-----------CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc
Q 009373 370 VLLVATWIPHTGPVNSLAFEF-----------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF 438 (536)
Q Consensus 370 ~~~~~~~~~h~~~v~~l~~~~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (536)
.....+.+|...|..+.|+| ..+++++.|++|++||+..+ .+...+..|
T Consensus 392 -~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------------v~i~~f~kH 451 (524)
T KOG0273|consen 392 -NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------------VPIHTLMKH 451 (524)
T ss_pred -cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------------ceeEeeccC
Confidence 67888999999999999976 48999999999999999985 344456789
Q ss_pred cccEEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373 439 ECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK 513 (536)
Q Consensus 439 ~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 513 (536)
..+|.++++++ .|+|+|+.||.|.+|+.++++.++.... ...++.+.|+.+|..+..|..+...
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-----------~~~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-----------TGGIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-----------CCeEEEEEEcCCCCEEEEEecCCCc
Confidence 99999999885 5999999999999999999987765432 2236899999999999987665443
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=252.44 Aligned_cols=281 Identities=17% Similarity=0.231 Sum_probs=241.6
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-DGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 226 (536)
++-.+.||.+.|+.+.|+|+|.+||||+.|..|.+|++. .-+....+.+|.+.|+.+. .+++.+++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 456788999999999999999999999999999999964 4466777889999999887 8999999999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ec
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PH 301 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~ 301 (536)
+++|+ ....+.+|.+-|.++.. ...++.+++.||++++||+++..+++++.....++++. ..
T Consensus 119 ~~tG~-------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 119 AETGK-------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT 185 (338)
T ss_pred cccce-------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc
Confidence 98874 67788899999999987 55788999999999999999999999998788888887 55
Q ss_pred CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373 302 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 380 (536)
Q Consensus 302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 380 (536)
+..+.+|+ |+.|++||++.+.....+. ||...|+.+..+|+|.++.+-+.|.++++||++...+. .+++..+.+|.
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~--~R~v~if~g~~ 262 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS--QRCVKIFQGHI 262 (338)
T ss_pred ccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCC--CceEEEeecch
Confidence 66777777 9999999999999999885 79999999999999999999999999999999876322 24566666653
Q ss_pred C----CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EE
Q 009373 381 G----PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI 452 (536)
Q Consensus 381 ~----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 452 (536)
. .....+|+| ..+.+|+.|..+++||... ......+.||...|.+++|.+. .|
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~-------------------r~~lyklpGh~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-------------------RRILYKLPGHYGSVNEVDFHPTEPII 323 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeeccc-------------------ccEEEEcCCcceeEEEeeecCCCcEE
Confidence 2 334566776 6899999999999999876 3445567899999999998886 99
Q ss_pred EEecCCCeEEEEe
Q 009373 453 VCGGEEGIVRIWN 465 (536)
Q Consensus 453 ~sg~~Dg~i~vW~ 465 (536)
.+++.|.+|++=+
T Consensus 324 ls~~sdk~i~lge 336 (338)
T KOG0265|consen 324 LSCSSDKTIYLGE 336 (338)
T ss_pred EEeccCceeEeec
Confidence 9999999998743
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-36 Score=267.09 Aligned_cols=274 Identities=21% Similarity=0.306 Sum_probs=235.2
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP 232 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~ 232 (536)
..-..+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++. .++..+++|+.+|.|++|+..-.
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-- 170 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-- 170 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--
Confidence 34456899999999999999999999999999854444444588999888775 89999999999999999986433
Q ss_pred ceecccCcccccceEEeeCC-ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEE
Q 009373 233 HLFDISGSEKQNTQFRLWEH-EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVA 306 (536)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~ 306 (536)
.+..+.+| ...|++++| +...|+++|.||+|+|||....+....+. |.-.|.+++ |...+++
T Consensus 171 ------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 171 ------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred ------------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 23334444 589999999 66789999999999999999888877777 888999998 6777899
Q ss_pred Eec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373 307 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 385 (536)
Q Consensus 307 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 385 (536)
+++ |+.|++||.+++.++.++. +|...|..+.|+|++++|+++|.|..+++||+++. +.+.++++|...|++
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTS 311 (464)
T ss_pred EccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh------HHHHHhhcchhhhee
Confidence 988 8999999999999999996 69999999999999999999999999999999977 678889999999999
Q ss_pred EEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCe
Q 009373 386 LAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGI 460 (536)
Q Consensus 386 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~ 460 (536)
+.|+| ++|.+|+.||.|..|.+... .+...+-.+|...|+++++.+ ..|++|+.|.+
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~------------------~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLE------------------EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT 373 (464)
T ss_pred eccccccccceeeccCCCceEEEecccc------------------ccccCCCcccccceeeeeccccceeEeecCCCcc
Confidence 99987 79999999999999998732 223334467888898888765 59999999999
Q ss_pred EEEEeCC
Q 009373 461 VRIWNFS 467 (536)
Q Consensus 461 i~vW~~~ 467 (536)
+++|.-.
T Consensus 374 ~rfw~r~ 380 (464)
T KOG0284|consen 374 VRFWTRN 380 (464)
T ss_pred eeeeccC
Confidence 9999754
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=281.45 Aligned_cols=337 Identities=19% Similarity=0.265 Sum_probs=260.4
Q ss_pred hccccCCccceeeeeC-ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--C--CCEEEE
Q 009373 141 RSKTFLGRYSIDVLYG-HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--D--KKLLVA 215 (536)
Q Consensus 141 ~~~~~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~s 215 (536)
+.+.+.....++.++. |++||.-++|+|.+.+|++|+.|+.|+|||+..+.+...+.+|++.|.++.+ + ...|++
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee
Confidence 3333333345778888 9999999999999999999999999999999999999999999988877653 2 235777
Q ss_pred EeCCCcEEEEEcccCccc--------------------------------------------------------------
Q 009373 216 GGTDGFIHCWRAVEVLPH-------------------------------------------------------------- 233 (536)
Q Consensus 216 g~~dg~i~vwd~~~~~~~-------------------------------------------------------------- 233 (536)
|+.|+++++||+.+....
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~ 246 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL 246 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc
Confidence 788888888877633210
Q ss_pred ------------------------------------------------------------eeccc---------------
Q 009373 234 ------------------------------------------------------------LFDIS--------------- 238 (536)
Q Consensus 234 ------------------------------------------------------------~~~~~--------------- 238 (536)
+++..
T Consensus 247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI 326 (775)
T KOG0319|consen 247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI 326 (775)
T ss_pred CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence 00000
Q ss_pred ------C-----------c-------ccccceEEeeCCccCEEEEE-E-eCCEEEEEecCCeEEEEeCCCceE----eEe
Q 009373 239 ------G-----------S-------EKQNTQFRLWEHEGPITSLA-L-DLTRIYSGSWDMTVRVWDRALLKC----LKV 288 (536)
Q Consensus 239 ------~-----------~-------~~~~~~~~~~~h~~~v~~l~-~-~~~~l~s~s~dg~i~iwd~~~~~~----~~~ 288 (536)
+ + ........+.||+..|.++. + +|..|+|||.|.++++|.++.+.. +..
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~ 406 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ 406 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence 0 0 00001123448999999998 4 667999999999999998844332 222
Q ss_pred ee-ccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcEE---EE-----EccccccceEEEEEeCCCCEEEEEcCCCc
Q 009373 289 LR-HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLL---TV-----VNGAHVGNTKSLARSHTGDFLFTGGEDGA 355 (536)
Q Consensus 289 ~~-~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~~---~~-----~~~~~~~~i~~l~~~~~~~~l~tg~~dg~ 355 (536)
.. |...|.+++ -...+|++++ |.++++|++...+.. .. ....|...|++++++|+.++++|||.|.+
T Consensus 407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 23 888888887 3456888888 999999999872211 11 12369999999999999999999999999
Q ss_pred EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee
Q 009373 356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 433 (536)
Q Consensus 356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (536)
.+||++... ....++.||...|.++.|++ ..++|+|.|++|+||.+.+ ..+..
T Consensus 487 aKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-------------------fSClk 541 (775)
T KOG0319|consen 487 AKIWDLEQL------RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-------------------FSCLK 541 (775)
T ss_pred eeeecccCc------eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-------------------ceeee
Confidence 999999966 78999999999999999998 4999999999999999998 45667
Q ss_pred eeccccccEEEEEec--CCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373 434 MLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA 511 (536)
Q Consensus 434 ~~~~~~~~v~~~~~~--~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 511 (536)
++.||+..|+...|- +..|+|++.||.|++|++.+++.+.++-. .+.++=++..+|.+.+++++.-++
T Consensus 542 T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~----------H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 542 TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA----------HNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh----------ccceeEEEeecCccceeEecCCCe
Confidence 889999999988874 45999999999999999999988876644 334556777788888777654443
Q ss_pred c
Q 009373 512 K 512 (536)
Q Consensus 512 ~ 512 (536)
.
T Consensus 612 ~ 612 (775)
T KOG0319|consen 612 R 612 (775)
T ss_pred E
Confidence 3
No 18
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=237.98 Aligned_cols=276 Identities=18% Similarity=0.256 Sum_probs=233.2
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 227 (536)
..+.+.+|.++|..+.|+-+|+|.+|++.|.+|++|+...|.+++++.+|+..|+... .|+..+++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 3578899999999999999999999999999999999999999999999999998776 78899999999999999999
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC--ceEeEeee-ccccEEEEeecC
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL--LKCLKVLR-HSDWVYGLAPHD 302 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~-~~~~v~~~~~~~ 302 (536)
.+|+ ....+.+|.+.|+.+.| +...+++|+.|.++++||-++ .++++.+. ..+.|.++.-.+
T Consensus 89 ~TGk-------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 89 NTGK-------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred ccCe-------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 9874 67889999999999999 457899999999999999875 46677776 788999999999
Q ss_pred CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
..+++|+ ||+++.||++.|.....+ ...+|++++|+++++..++++.|+++++.|-.++ +.+..+++|..
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG------klL~sYkGhkn 226 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG------KLLKSYKGHKN 226 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchh------HHHHHhccccc
Confidence 9999999 999999999999887665 4568999999999999999999999999999999 78888999987
Q ss_pred CeEEEEE----cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc-ccEEEEEecCC--EEEE
Q 009373 382 PVNSLAF----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGAD--RIVC 454 (536)
Q Consensus 382 ~v~~l~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~s 454 (536)
.-..+.. +..++++||.||.|++||+........ +..+. ..+.++++.+. .+++
T Consensus 227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk-------------------~~~~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK-------------------LSVVSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred ceeeeeeeecccceeEEeccCCceEEEEEeccceeeee-------------------eccCCceeEEeeecccCccceeE
Confidence 6655544 247999999999999999987433222 22222 34677777775 4555
Q ss_pred ecCCCeEEEEeCC
Q 009373 455 GGEEGIVRIWNFS 467 (536)
Q Consensus 455 g~~Dg~i~vW~~~ 467 (536)
+. ++.+..|.-.
T Consensus 288 A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 288 AT-GHGDLFWYQE 299 (307)
T ss_pred ec-CCceeceeeh
Confidence 54 3446666543
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9e-34 Score=270.10 Aligned_cols=304 Identities=19% Similarity=0.340 Sum_probs=244.5
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCC-CcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD-SIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 227 (536)
++.+.--..+|..++|+..|+.||.|+.. |.+-||+..+...+...++|...+.++. |||.++++|+.||.|+|||.
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT 379 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEec
Confidence 34444455788999999999999988764 8999999999999999999988877765 99999999999999999999
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccE--EEEe--ec
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV--YGLA--PH 301 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~--~~ 301 (536)
..+. +..++..|++.|+.+.| .++.+++.+-||+|+.||+...+..+++..+.++ .|++ |.
T Consensus 380 ~Sgf-------------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 380 QSGF-------------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred cCce-------------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 7653 88899999999999999 8899999999999999999999999999854443 4555 77
Q ss_pred CCEEEEec-C-CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373 302 DTTVASTS-G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379 (536)
Q Consensus 302 ~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 379 (536)
|.++++|+ | -.|.+|++++|+.+..+. ||.++|.+++|+|.+..|++|+.|.+|++||+-... ..+.+ ..+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~-----~~vEt-l~i 519 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS-----GTVET-LEI 519 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccCeEEeccccceEEEEEeeccC-----ceeee-Eee
Confidence 99999988 5 569999999999999885 799999999999999999999999999999987662 12222 246
Q ss_pred CCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE---eeCCCeeeeccccccEEEEEecCCEEEE
Q 009373 380 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI---EVEPPQRMLHGFECNLLSVDIGADRIVC 454 (536)
Q Consensus 380 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~l~s 454 (536)
...+..++|.| ..|+++..||.|.+||.+...+.......+....-. ..........+......+.+++|..+++
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA 599 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILA 599 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEe
Confidence 77889999986 799999999999999998776654332221110000 0000111122334456677888889999
Q ss_pred ecCCCeEEEEeCCchhhHHH
Q 009373 455 GGEEGIVRIWNFSQAFEIER 474 (536)
Q Consensus 455 g~~Dg~i~vW~~~~~~~~~~ 474 (536)
||....|++|++.++..+++
T Consensus 600 gG~sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 600 GGESNSICIYDVPEGVLLKK 619 (893)
T ss_pred cCCcccEEEEECchhheeee
Confidence 99999999999998776653
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-34 Score=240.44 Aligned_cols=281 Identities=20% Similarity=0.219 Sum_probs=233.0
Q ss_pred eeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEE
Q 009373 192 SIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI 266 (536)
Q Consensus 192 ~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 266 (536)
...++.+|.+.|..+. .+.+.+++++.|.++.+|++.... .....+...+.||+..|..+.. ++++.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd--------~~~G~~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD--------IKYGVPVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc--------cccCceeeeeeccceEecceEEccCCceE
Confidence 4567889999999887 346799999999999999986642 1224567889999999999988 89999
Q ss_pred EEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH 342 (536)
Q Consensus 267 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~ 342 (536)
++++.|+++++||+.+++..+.|. |...|.+++ ++++.+++|+ |.+|.+||+............+.+.|+|+.|+|
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 999999999999999998888887 999999988 8899999999 999999999876665555444588999999999
Q ss_pred C--CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373 343 T--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS 418 (536)
Q Consensus 343 ~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 418 (536)
+ ..+|++++.|++|++||+++. +....+.+|++.++.++++| ..+++|+.||.+.+||++..+...
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---- 228 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---- 228 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE----
Confidence 8 679999999999999999998 67788899999999999987 689999999999999999854332
Q ss_pred CCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcccc
Q 009373 419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM 497 (536)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (536)
..+|...|.++.|+++ +.+++..+..|+|||++++..+..+.....+. ......-+..+++|
T Consensus 229 ----------------sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaw 291 (315)
T KOG0279|consen 229 ----------------SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAW 291 (315)
T ss_pred ----------------eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEE
Confidence 2346678899999998 66666667779999999999998876554443 11222334567899
Q ss_pred ccCCCCccee
Q 009373 498 SSKGGRTDQC 507 (536)
Q Consensus 498 ~~~g~~~~~~ 507 (536)
++||..+-+.
T Consensus 292 s~dG~tLf~g 301 (315)
T KOG0279|consen 292 SADGQTLFAG 301 (315)
T ss_pred cCCCcEEEee
Confidence 9999988754
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.4e-33 Score=234.89 Aligned_cols=284 Identities=21% Similarity=0.332 Sum_probs=229.4
Q ss_pred ceeeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCC---ceeeee-CCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009373 150 SIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDG---FSIASS-KPLGCTIRAVA--ADKKLLVAGGTDGFI 222 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~---~~~~~~-~~~~~~v~~~~--~~~~~l~sg~~dg~i 222 (536)
.++.+.||++.|..++|+|- |..||||+.|+.|++|+...+ .+...+ .+|...|..++ |.|++|++|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 47899999999999999998 889999999999999999853 233333 46777776665 899999999999999
Q ss_pred EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc---eEeEeee-ccccEE
Q 009373 223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL---KCLKVLR-HSDWVY 296 (536)
Q Consensus 223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~-~~~~v~ 296 (536)
.||.-..+. ..++..+.||...|.+++| +|++|++++.|+.|-||.+..+ ++...++ |...|.
T Consensus 86 ~Iw~k~~~e-----------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 86 VIWKKEDGE-----------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred EEeecCCCc-----------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence 999865432 5678889999999999999 8899999999999999998743 5666666 888888
Q ss_pred EEe--ecCCEEEEec-CCcEEEEeCCC---CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373 297 GLA--PHDTTVASTS-GSDVYIWDTNS---GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 370 (536)
Q Consensus 297 ~~~--~~~~~l~~~~-d~~i~i~d~~~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 370 (536)
.+. |...+|++++ |++|++|+-.. -.+..++. +|...|.+++|+|.|..|++++.|++++||-....
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------ 227 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------ 227 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeeccC------
Confidence 887 5568999999 99999998762 35677775 79999999999999999999999999999986644
Q ss_pred ceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC-
Q 009373 371 LLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA- 449 (536)
Q Consensus 371 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 449 (536)
.. .-|..+++.++|....|++++.|+.|+++.-....... .+.-....-..|...|.++.+++
T Consensus 228 ~~----~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p------------~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 228 LS----GMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEP------------SWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred cc----hhcccceEeeeecccceEeccCCCEEEEEEecCCCCCc------------hHHHHHhhhcccccccceEEEcCC
Confidence 11 24778999999998899999999999999765310000 00111112345777777877776
Q ss_pred --CEEEEecCCCeEEEEeCC
Q 009373 450 --DRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 450 --~~l~sg~~Dg~i~vW~~~ 467 (536)
++|++||.||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 399999999999999875
No 22
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.1e-34 Score=251.95 Aligned_cols=277 Identities=26% Similarity=0.369 Sum_probs=234.0
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEcccC
Q 009373 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~~~~ 230 (536)
-|.+-|.++... ++.++||++||++++||.. |+....+.+|.+++.++. +....+++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 588999998886 7899999999999999964 889999999999988665 33447999999999999998776
Q ss_pred ccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC-------------------------c
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-------------------------L 283 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~-------------------------~ 283 (536)
.. .........||...|.++.. ++.++++||.|.+|+||+..+ +
T Consensus 180 ~~---------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 180 EN---------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred hh---------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 42 12233344599999999998 889999999999999999321 1
Q ss_pred eEeEeee-ccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373 284 KCLKVLR-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 284 ~~~~~~~-~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd 360 (536)
.++.++. |..+|.++. ++...+++++ |.+|+.||+.++..+.++. ....++++.++|..++|++|+.|..+++||
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred CceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecC
Confidence 2333444 888999988 6677788888 9999999999999998885 567899999999999999999999999999
Q ss_pred cccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc
Q 009373 361 IINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG 437 (536)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (536)
.+++. .-....++.+|.+.|.++.|+| ..|++|+.|+++++||+++. ..+...+.+
T Consensus 329 PR~~~---gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~------------------k~plydI~~ 387 (423)
T KOG0313|consen 329 PRTGD---GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST------------------KAPLYDIAG 387 (423)
T ss_pred CCCCC---CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC------------------CCcceeecc
Confidence 99883 2256778999999999999987 68999999999999999985 335567899
Q ss_pred ccccEEEEEecCC-EEEEecCCCeEEEEeCC
Q 009373 438 FECNLLSVDIGAD-RIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 438 ~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~ 467 (536)
|...|+++++... +++|||.|.+|+++.-.
T Consensus 388 h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 388 HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 9999999999877 99999999999998754
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-34 Score=266.31 Aligned_cols=346 Identities=20% Similarity=0.254 Sum_probs=262.2
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE 229 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~ 229 (536)
+++..|++.|.++.|+|....++++-++|.|.|||.++...++.+.-...+|.+.. ...+.+++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 35566999999999999999999999999999999999999999988888887654 7788999999999999999987
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCc-eEeEeee-ccccEEEEe---ecC
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA---PHD 302 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~---~~~ 302 (536)
+. .+..+..|.+.|.+++.++ .+++|+|+|.+|++||.+.. .+.++++ |...|++++ .+.
T Consensus 87 ~e-------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 87 GE-------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred ce-------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 64 7888999999999999955 68999999999999998754 6677777 999999998 467
Q ss_pred CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC--CEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373 303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379 (536)
Q Consensus 303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 379 (536)
+.+++++ |++|++|.+.+..+..++. +|...|+|+.+-+.| .+|++|+.|.+|+|||..+. .+++++.||
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------~CV~TLeGH 226 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------SCVQTLEGH 226 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH------HHHHHhhcc
Confidence 7899999 9999999999999999996 899999999998855 59999999999999999998 899999999
Q ss_pred CCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCC-ceeeEE----------eeCC-CeeeeccccccEEEE
Q 009373 380 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGK-RVSRVI----------EVEP-PQRMLHGFECNLLSV 445 (536)
Q Consensus 380 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~----------~~~~-~~~~~~~~~~~v~~~ 445 (536)
...|..+.|+| ..+++||.||++++|+-.+........-+- ++-.+. ...+ ....--|...+..++
T Consensus 227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsM 306 (794)
T KOG0276|consen 227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSM 306 (794)
T ss_pred cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceee
Confidence 99999999998 799999999999999988765443332211 111111 1111 111222344555556
Q ss_pred EecCCEEEEecCC-CeEEEE------eCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCcCC
Q 009373 446 DIGADRIVCGGEE-GIVRIW------NFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNG 518 (536)
Q Consensus 446 ~~~~~~l~sg~~D-g~i~vW------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 518 (536)
+.+|..+-+.... -.+.+- ++..|+.+.-..+.+. ...-.++.++.+|+|+.+++| |
T Consensus 307 d~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLg------s~eiyPq~L~hsPNGrfV~Vc----------g 370 (794)
T KOG0276|consen 307 DSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELG------SVEIYPQTLAHSPNGRFVVVC----------G 370 (794)
T ss_pred cCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhcc------ccccchHHhccCCCCcEEEEe----------c
Confidence 6555544333211 111121 1222222211111111 123346788999999999976 4
Q ss_pred CcceeeccccCCCCc
Q 009373 519 NRRSVWHNKRGMSGK 533 (536)
Q Consensus 519 ~~~~~~~~~~~~~~~ 533 (536)
+..+|-|+.-+.+.|
T Consensus 371 dGEyiIyTala~RnK 385 (794)
T KOG0276|consen 371 DGEYIIYTALALRNK 385 (794)
T ss_pred CccEEEEEeeehhhc
Confidence 555666666555554
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-33 Score=255.04 Aligned_cols=293 Identities=18% Similarity=0.269 Sum_probs=232.5
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC---CCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 226 (536)
.+++.|+.-|.|+.|+|||.+++|++.||.|.+||-.+|+.+..+. +|.+.|++++ ||+..+++++.|.+++|||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 4566799999999999999999999999999999999999999887 8999998887 9999999999999999999
Q ss_pred cccCccce------------------------------ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCe
Q 009373 227 AVEVLPHL------------------------------FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT 274 (536)
Q Consensus 227 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~ 274 (536)
+.+..... .++-..........+.||...|+++.. ++.+|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 98764210 001111223356678899999999999 7799999999999
Q ss_pred EEEEeCCCceEeEeee--cc------------------------------------------------------------
Q 009373 275 VRVWDRALLKCLKVLR--HS------------------------------------------------------------ 292 (536)
Q Consensus 275 i~iwd~~~~~~~~~~~--~~------------------------------------------------------------ 292 (536)
|.-||..++..-.... |.
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence 9999976542111000 00
Q ss_pred ----------------------ccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEE-EccccccceEEEEEeCCCCEEE
Q 009373 293 ----------------------DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLF 348 (536)
Q Consensus 293 ----------------------~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~ 348 (536)
....++.|++..++.|+ |+.|++|.+..+..... ....|.++|++++++||+.+||
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE
Confidence 01112236778888888 89999999987654322 2235999999999999999999
Q ss_pred EEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE
Q 009373 349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 426 (536)
Q Consensus 349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 426 (536)
+|...+.+.+||+.+.. .....+.-|++.|++++|+| .++++||.|-.|.||+++.+..
T Consensus 504 ~~Da~rkvv~yd~~s~~-----~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~-------------- 564 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASRE-----VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK-------------- 564 (603)
T ss_pred EeccCCcEEEEEcccCc-----eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh--------------
Confidence 99999999999998884 23445556999999999998 6999999999999999987522
Q ss_pred eeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCC
Q 009373 427 EVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 427 ~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~ 467 (536)
...+...|...|..+.|-.+ .+++.|.|..|++|++.
T Consensus 565 ----~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 565 ----HIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ----heEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 23344567777888887555 99999999999999975
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.2e-34 Score=256.31 Aligned_cols=269 Identities=20% Similarity=0.277 Sum_probs=232.6
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 235 (536)
+..|++++|+.+|.+||+|+.||.++||+. +|..+.++..|.++|+++. ..|++|++++.||++.+||..++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~---- 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT---- 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce----
Confidence 468999999999999999999999999995 5788889999999999987 567899999999999999987763
Q ss_pred cccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-C
Q 009373 236 DISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-G 310 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d 310 (536)
....+.-|+.+-.++.| +.+.|++++.|+.|+++.+....++.++. |.+.|.++. |.+.+|++++ |
T Consensus 310 ---------~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD 380 (524)
T KOG0273|consen 310 ---------VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDD 380 (524)
T ss_pred ---------EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCC
Confidence 44455568887788899 78899999999999999999888888887 999999999 5599999999 8
Q ss_pred CcEEEEeCCCCcEEEEEccccccceEEEEEeCCC---------CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 311 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG---------DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 311 ~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~---------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
++++||+.........+. +|...|+.+.|+|+| ..+++++.|++|++||+..+ .++.++..|..
T Consensus 381 ~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~ 453 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQE 453 (524)
T ss_pred CeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCC
Confidence 999999999888888885 699999999999965 47999999999999999999 88999999999
Q ss_pred CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEE--EEEecCCEEEEecC
Q 009373 382 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGE 457 (536)
Q Consensus 382 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~ 457 (536)
+|.+++|+| .++++|+.||.|.+|+.++.+. .+...+. ..|+ ++...|++|..+-.
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l-------------------~~s~~~~-~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL-------------------VKSYQGT-GGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchhe-------------------eEeecCC-CeEEEEEEcCCCCEEEEEec
Confidence 999999986 7999999999999999988422 2222222 2344 45556779999999
Q ss_pred CCeEEEEeCC
Q 009373 458 EGIVRIWNFS 467 (536)
Q Consensus 458 Dg~i~vW~~~ 467 (536)
||.+++-|+.
T Consensus 514 d~~vcvldlr 523 (524)
T KOG0273|consen 514 DGSVCVLDLR 523 (524)
T ss_pred CCCceEEEec
Confidence 9999998874
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=269.00 Aligned_cols=287 Identities=21% Similarity=0.278 Sum_probs=248.3
Q ss_pred ceeeeeCccccEEEEEEe-cCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVL-ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~-~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 226 (536)
.+..+-|..+.|..|.|- |+.++||.++..+.+|+|++.+..+. .+.+|...|+++. .+|.+|+||+.|.++++|.
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 455667888999999886 56689999999999999999887776 7899999999998 6677999999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE---eEee-------eccc
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC---LKVL-------RHSD 293 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-------~~~~ 293 (536)
++.+. ....+.....+|++.|.++++ ....|+++|.|+++++|++...+. ...+ .|..
T Consensus 394 ~~~~~---------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK 464 (775)
T KOG0319|consen 394 LNNNC---------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK 464 (775)
T ss_pred ecCCc---------chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc
Confidence 84432 223456667899999999999 346899999999999999876211 1111 1888
Q ss_pred cEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373 294 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 370 (536)
Q Consensus 294 ~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 370 (536)
.|++++ |+.+++++|+ |.+.++|++.......++. ||...+.++.|+|..+.++|+|.|++|+||.+.+.
T Consensus 465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f------ 537 (775)
T KOG0319|consen 465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF------ 537 (775)
T ss_pred cccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccc------
Confidence 999887 9999999999 9999999999989888886 79999999999999999999999999999999998
Q ss_pred ceeeeccCCCCCeEEEEE--cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec
Q 009373 371 LLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG 448 (536)
Q Consensus 371 ~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 448 (536)
.++.++.||...|....| ++..|++++.||-|++|++++ ..+...+.+|+..|++++.+
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt-------------------~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT-------------------NECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc-------------------hhhhhhhhhccceeEEEeec
Confidence 899999999999999999 468999999999999999998 56777889999999999977
Q ss_pred CC--EEEEecCCCeEEEEeCCchhhH
Q 009373 449 AD--RIVCGGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 449 ~~--~l~sg~~Dg~i~vW~~~~~~~~ 472 (536)
+. .++||+.||.|.+|.=.+..+.
T Consensus 599 ~~~~~~~tgg~Dg~i~~wkD~Te~~~ 624 (775)
T KOG0319|consen 599 PLLDMFVTGGGDGRIIFWKDVTEEEQ 624 (775)
T ss_pred CccceeEecCCCeEEEEeecCcHHHH
Confidence 65 8999999999999987665444
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-33 Score=270.48 Aligned_cols=281 Identities=21% Similarity=0.269 Sum_probs=231.1
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-------------------------------ceeeeeCC
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-------------------------------FSIASSKP 198 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-------------------------------~~~~~~~~ 198 (536)
...++.--...++|..|++++.+||.|-.|..|++|.+... ....++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 34555566678999999999999999999999999988731 12344678
Q ss_pred CCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCe
Q 009373 199 LGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT 274 (536)
Q Consensus 199 ~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~ 274 (536)
|.++|+..+ |+.++|++++.|+++++|.+.+. .....+.||..+|.++.| .|-+|+|||.|++
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-------------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-------------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccc-------------eeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 999997655 99999999999999999999774 477888999999999999 5679999999999
Q ss_pred EEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEE
Q 009373 275 VRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 350 (536)
Q Consensus 275 i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg 350 (536)
.++|......+.+.+. |-+.|.|+. |+..++++|+ |.+|++||+.+|..++.|. ||.++|.+++|+|+|.+|++|
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeec
Confidence 9999999888888877 888888877 9999999999 8999999999999999995 799999999999999999999
Q ss_pred cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCce-----e
Q 009373 351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV-----S 423 (536)
Q Consensus 351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~ 423 (536)
+.||.|.+||+.++ ..+..+.+|++.|.+|.|+ +..||+|+.|.+|++||+...........-... .
T Consensus 596 ~ed~~I~iWDl~~~------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~ 669 (707)
T KOG0263|consen 596 DEDGLIKIWDLANG------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQ 669 (707)
T ss_pred ccCCcEEEEEcCCC------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccc
Confidence 99999999999999 7889999999999999997 589999999999999999865433111000000 0
Q ss_pred eEEeeCCCeeeeccccccEEEEEecCC
Q 009373 424 RVIEVEPPQRMLHGFECNLLSVDIGAD 450 (536)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~v~~~~~~~~ 450 (536)
...........+.....+|..+.|.-+
T Consensus 670 ~~~~~~~llgs~~tK~tpv~~l~Ftrr 696 (707)
T KOG0263|consen 670 ENNASSLLLGSFYTKNTPVVGLHFTRR 696 (707)
T ss_pred cCCCCcceeeeeeecCceEEEEEEecc
Confidence 000111223344455567888888765
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.1e-32 Score=255.07 Aligned_cols=276 Identities=32% Similarity=0.500 Sum_probs=233.5
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~ 228 (536)
++++.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+ .++++.+++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35778999999999999999999999999999999999998888888887776544 4788899999999999999997
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 303 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 303 (536)
++ .....+..|...|.++.| ++..+++++.||.|.+||+.+++....+. |...+.++. +++.
T Consensus 82 ~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 82 TG-------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cc-------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 64 245566788889999999 34677777779999999999888888877 788888887 6678
Q ss_pred EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373 304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
++++++ ++.+++||+++++.+..+. .|...+.++.|+|+++.+++++.||.|++||++.. ..+..+..|...
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~ 221 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------KCLGTLRGHENG 221 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC------ceecchhhcCCc
Confidence 999888 9999999999988888876 58889999999999999999999999999999887 566677789999
Q ss_pred eEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCC
Q 009373 383 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEE 458 (536)
Q Consensus 383 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~D 458 (536)
|.++.|++ .++++++.||.|++||+.+.. ....+.+|...+.++.+++ .+|++++.|
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-------------------CVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCce-------------------eEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 99999987 567777779999999998632 1222345666777777766 599999999
Q ss_pred CeEEEEe
Q 009373 459 GIVRIWN 465 (536)
Q Consensus 459 g~i~vW~ 465 (536)
|.|++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-32 Score=258.99 Aligned_cols=317 Identities=19% Similarity=0.226 Sum_probs=258.6
Q ss_pred eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCC-CcEEEEEcccC
Q 009373 154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTD-GFIHCWRAVEV 230 (536)
Q Consensus 154 l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d-g~i~vwd~~~~ 230 (536)
+......|++.+|++..+.|++|-..|...+|.+..-..++.+.-...+|..++ ..|+.|+.|+.. |.+.||++.+.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 334458899999999999999999999999999999999998877777777666 459999998876 89999999664
Q ss_pred ccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEE
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV 305 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l 305 (536)
..+...++|...++++++ ||.++++|+.||.|+|||..++-|..++. |...|+.+. ..++.+
T Consensus 341 -------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 341 -------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred -------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE
Confidence 366778899999999999 77899999999999999999999999998 999999887 789999
Q ss_pred EEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-cEEEEEcccCccccccceeeeccCCCCCe
Q 009373 306 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLVATWIPHTGPV 383 (536)
Q Consensus 306 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 383 (536)
++.+ ||+|+.||+...+..+++..+...+..|++..|.|.++++|+.|. .|.+|++.++ +.+..+.||.+||
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPV 481 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPV 481 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcc
Confidence 9998 999999999999999999877777889999999999999999886 4999999999 7889999999999
Q ss_pred EEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeE
Q 009373 384 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV 461 (536)
Q Consensus 384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i 461 (536)
.+++|+| +.|+++|+|.+|++||+-..... ....-..|....+++.|+|+.|+.+..||.|
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-----------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-----------------VETLEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCce-----------------eeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence 9999986 89999999999999998652111 0111123334445555667899999999999
Q ss_pred EEEeCCchhhHHHHHHh--hhcccch--h------HHHhhhhccccccCCCCcce
Q 009373 462 RIWNFSQAFEIERRARA--LRGIRLE--N------RMRRRKLQTEMSSKGGRTDQ 506 (536)
Q Consensus 462 ~vW~~~~~~~~~~~~~~--~~~~~~~--~------~~~~~~~~~~~~~~g~~~~~ 506 (536)
.+||...+.++...... +.+.|.. . ...+.-+.++.++||..|.+
T Consensus 545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA 599 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILA 599 (893)
T ss_pred EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEe
Confidence 99999998877443221 1111111 0 11123456788888888776
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=259.75 Aligned_cols=285 Identities=18% Similarity=0.300 Sum_probs=238.4
Q ss_pred cCCccceeeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCC-CceeeeeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009373 145 FLGRYSIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDG 220 (536)
Q Consensus 145 ~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg 220 (536)
+..+..+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.+|..+|.++. .+|..+++++.|+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 345556899999999999999999 789999999999999999976 899999999999997765 7899999999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e-CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY 296 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~ 296 (536)
.+++||+++|. +...+ .-...+.|+.| + .+.+++|+.|+.|+.||+++++.++.+. |-+.|.
T Consensus 281 ~lKlwDtETG~-------------~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 281 FLKLWDTETGQ-------------VLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred eeeeeccccce-------------EEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 99999999984 23333 23446778888 3 4889999999999999999999998887 888899
Q ss_pred EEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373 297 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 373 (536)
.+. ++++.+++++ |++++||+.+.+-.+..+...+.....++..+|++++++.=+.|..|.+|.+...- ....-
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~---r~nkk 423 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF---RLNKK 423 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc---ccCHh
Confidence 888 8899999888 79999999999887776654455567789999999999999999999999976552 22445
Q ss_pred eeccCCCC--CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC
Q 009373 374 ATWIPHTG--PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA 449 (536)
Q Consensus 374 ~~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 449 (536)
..+.+|.. .-..+.|+| .+|++|+.||.+.+||.++. .....+..|...+..+.+.+
T Consensus 424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-------------------kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-------------------KLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-------------------hhhhccccCCcceEEEEecC
Confidence 56778854 445667776 79999999999999999984 33344677878888888876
Q ss_pred C---EEEEecCCCeEEEEe
Q 009373 450 D---RIVCGGEEGIVRIWN 465 (536)
Q Consensus 450 ~---~l~sg~~Dg~i~vW~ 465 (536)
. .+||+|.||.|++|+
T Consensus 485 ~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 485 VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCcceeEecccCceeEecC
Confidence 5 899999999999996
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-32 Score=242.08 Aligned_cols=279 Identities=19% Similarity=0.220 Sum_probs=234.4
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC--CCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--PLGCTIRAVAADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 227 (536)
....+.||++.|+++.|+.+|.+||||+.+|.|+||...++.....+. .....-++++|.+..|+.|+.||.+.+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 467899999999999999999999999999999999999998888774 334445677799999999999999999998
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--cc--ccEEEEeec
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HS--DWVYGLAPH 301 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~--~~v~~~~~~ 301 (536)
..+ .....+.||+.++++=.| +|++++++..||+|++||..+++++..+. .. .+..++...
T Consensus 178 p~~-------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~ 244 (399)
T KOG0296|consen 178 PSQ-------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA 244 (399)
T ss_pred CCc-------------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccc
Confidence 653 356678899999999988 89999999999999999999999998887 22 333344477
Q ss_pred CCEEEEec-CCcEEEEeCCCCcEEEEEcc-------ccccceEEEEEeC---CCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373 302 DTTVASTS-GSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSH---TGDFLFTGGEDGAIHMYEIINDCTEANV 370 (536)
Q Consensus 302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-------~~~~~i~~l~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 370 (536)
+..++.|+ ++.+++-+..+|+.+..... .+...+.++.+.| .=.+.|+|+-||+|.|||+...
T Consensus 245 ~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~------ 318 (399)
T KOG0296|consen 245 GSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS------ 318 (399)
T ss_pred cceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc------
Confidence 88888888 88999999888888776652 3555566666555 4468899999999999999876
Q ss_pred ceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC
Q 009373 371 LLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA 449 (536)
Q Consensus 371 ~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 449 (536)
.++..-.|..+|+.+.|.+ .+|++++.||.|+.||.+++ .....+.||...|.++..++
T Consensus 319 -~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG-------------------~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 319 -TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG-------------------QLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred -hhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc-------------------ceEEEEecCchheeEEEEcC
Confidence 3444557899999999988 89999999999999999995 44556899999999888766
Q ss_pred C--EEEEecCCCeEEEEeCC
Q 009373 450 D--RIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 450 ~--~l~sg~~Dg~i~vW~~~ 467 (536)
+ +++|+|.|++.+||+++
T Consensus 379 ~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 379 QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCcEEEEecCCCeEEEEecC
Confidence 5 99999999999999875
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.8e-33 Score=242.44 Aligned_cols=325 Identities=16% Similarity=0.156 Sum_probs=261.6
Q ss_pred cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373 149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 226 (536)
.++.+|..|+++|.+++.+|+.++++||+.|....+|+..+|.....+.+|...|.++. .+|.+|+||+.+|.|.||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 36789999999999999999999999999999999999999999999999999988765 7899999999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEE--eec
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL--APH 301 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~--~~~ 301 (536)
..++. ....+...-+.+.=+.| .+..|++|+.||.+-+|.+.+....+.+. |..++++= .|+
T Consensus 135 ~stg~-------------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd 201 (399)
T KOG0296|consen 135 VSTGG-------------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD 201 (399)
T ss_pred cccCc-------------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence 98764 23333333445555566 45789999999999999999876666666 88887764 499
Q ss_pred CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc--eeeeccC
Q 009373 302 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL--LVATWIP 378 (536)
Q Consensus 302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~~~~~~ 378 (536)
|+.++++. ||+|++||+.++.++..+.........++.++..+..++.|+.++.+++-+..+++...-.. .......
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 99999999 89999999999999999875556678889999999999999999999998887773211111 0111124
Q ss_pred CCCCeEEEEEcC-----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC-CEE
Q 009373 379 HTGPVNSLAFEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA-DRI 452 (536)
Q Consensus 379 h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l 452 (536)
+...+.|+.+.| .+.++|+-||+|.|||+.... .+..-.|...|..+.|.+ .+|
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--------------------~R~~c~he~~V~~l~w~~t~~l 341 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--------------------LRHICEHEDGVTKLKWLNTDYL 341 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccch--------------------hheeccCCCceEEEEEcCcchh
Confidence 556666666654 688999999999999998632 223355778899999988 599
Q ss_pred EEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCc
Q 009373 453 VCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPM 516 (536)
Q Consensus 453 ~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 516 (536)
++++.||.|+.||..+|.+.... ...+..+..++.+|+++++.+.|.+.+...|
T Consensus 342 ~t~c~~g~v~~wDaRtG~l~~~y----------~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTGQLKFTY----------TGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred eeeccCceEEeeeccccceEEEE----------ecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 99999999999999999766543 2334557899999999999998887766555
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=226.70 Aligned_cols=243 Identities=21% Similarity=0.299 Sum_probs=205.2
Q ss_pred ccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEE
Q 009373 148 RYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIH 223 (536)
Q Consensus 148 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~ 223 (536)
....++++.....|..+...|+++.||+|+. ..||+||+.++. ++.++.+|...|.++ ..+|+.+++|+.||+++
T Consensus 30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 3457889888999999999999999999885 679999998774 588899997777665 48999999999999999
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA 299 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~ 299 (536)
|||++.. .......|.++|+++.. +...|++|..+|.|++||+....+...+- ....|.++.
T Consensus 109 IWdlR~~--------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~ 174 (311)
T KOG0315|consen 109 IWDLRSL--------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT 174 (311)
T ss_pred EEeccCc--------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE
Confidence 9999763 23334568899999999 55689999999999999999887776664 445666666
Q ss_pred --ecCCEEEEec-CCcEEEEeCCCCc------EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373 300 --PHDTTVASTS-GSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 370 (536)
Q Consensus 300 --~~~~~l~~~~-d~~i~i~d~~~~~------~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 370 (536)
|+|.+++++. .|.+++|++-... ++..+. .|.+.+..+.++|++++|++++.|.+++||+..+. +
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-----~ 248 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-----F 248 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCCc-----e
Confidence 9999999998 6999999997653 344453 69999999999999999999999999999998776 2
Q ss_pred ceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCccc
Q 009373 371 LLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 371 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~ 411 (536)
+....+.+|...++..+|+ +.||++|+.|+.+++||+..++
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 4556778999999999997 4899999999999999998853
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-31 Score=284.45 Aligned_cols=292 Identities=13% Similarity=0.171 Sum_probs=223.1
Q ss_pred eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----c----eeeeeCCCCceEEEEe---cCCCEEEEEeCCCc
Q 009373 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----F----SIASSKPLGCTIRAVA---ADKKLLVAGGTDGF 221 (536)
Q Consensus 153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----~----~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~ 221 (536)
.+.+|.+.|.+++|+|++++||||+.|+.|+||++.+. . ....+.. ...+.++. +++.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCe
Confidence 34569999999999999999999999999999997542 1 1122222 23344443 35789999999999
Q ss_pred EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEE
Q 009373 222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL 298 (536)
Q Consensus 222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 298 (536)
|++||+.++. ....+.+|.+.|.+++| ++.+|++|+.||+|++||++++..+..+.+...+.++
T Consensus 557 v~lWd~~~~~-------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 557 VQVWDVARSQ-------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred EEEEECCCCe-------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 9999997642 55667899999999999 3578999999999999999999998888866778877
Q ss_pred e---ecCCEEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373 299 A---PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 299 ~---~~~~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 373 (536)
. +++.++++|+ |+.|++||+++++ .+..+. +|...|.++.|. ++.+|++++.|+.|++||++.........++
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 6 4688899888 8999999998876 345553 799999999997 6789999999999999999764322223567
Q ss_pred eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--
Q 009373 374 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA-- 449 (536)
Q Consensus 374 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 449 (536)
..+.+|...+++++|++ .+|++|+.|+.|++|+.............. . . .........+...|.++.+++
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~-~---~--~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT-I---D--PVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc-C---C--cccccccCCCCcEEEEEEEcCCC
Confidence 78899999999999975 799999999999999986542221100000 0 0 000011234455566666654
Q ss_pred CEEEEecCCCeEEEEeC
Q 009373 450 DRIVCGGEEGIVRIWNF 466 (536)
Q Consensus 450 ~~l~sg~~Dg~i~vW~~ 466 (536)
..|++|+.||.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 59999999999999986
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.9e-32 Score=266.31 Aligned_cols=279 Identities=24% Similarity=0.403 Sum_probs=233.4
Q ss_pred eeeeeCc-cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEE
Q 009373 151 IDVLYGH-TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 151 ~~~l~~h-~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vw 225 (536)
...+.+| ...|.++.|+++|+.+++++.|+.+++|+..++. ....+.+|...|.++ ++++.++++|+.|++|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4555555 8999999999999999999999999999998877 677778888877655 5999999999999999999
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P 300 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~ 300 (536)
|+... .....++.+|...|++++| +++.+++|+.|++|++||++++++...+. |.+.|.+++ +
T Consensus 231 d~~~~------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 231 DLKDD------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred eccCC------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 99433 3467888999999999999 66899999999999999999999999998 999999887 8
Q ss_pred cCCEEEEec-CCcEEEEeCCCCc--EEEEEcccccc--ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373 301 HDTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 375 (536)
Q Consensus 301 ~~~~l~~~~-d~~i~i~d~~~~~--~~~~~~~~~~~--~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 375 (536)
+++++++++ |+.|++||+.++. +...+.. +.. .++++.|+|++.++++++.|+.+++||+... ..+..
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~------~~~~~ 371 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG------KSVGT 371 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC------cceee
Confidence 899999999 9999999999999 4555543 443 5999999999999999999999999999988 67788
Q ss_pred ccCCCCCeEEEE---Ec--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc-cccEEEEEec-
Q 009373 376 WIPHTGPVNSLA---FE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF-ECNLLSVDIG- 448 (536)
Q Consensus 376 ~~~h~~~v~~l~---~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~- 448 (536)
+.+|...+.++. .. +.++++|+.|+.|++||+.++. ....+.+| ...+..+.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~-------------------~~~~l~~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG-------------------ILQRLEGHSKAAVSDLSSHP 432 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc-------------------hhhhhcCCCCCceeccccCC
Confidence 888887654432 12 3799999999999999998742 22334566 5555555554
Q ss_pred -CCEEEEec--CCCeEEEEeCC
Q 009373 449 -ADRIVCGG--EEGIVRIWNFS 467 (536)
Q Consensus 449 -~~~l~sg~--~Dg~i~vW~~~ 467 (536)
..++++++ .|+.|++|...
T Consensus 433 ~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 433 TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CcCeeeecCcCCCceEEEecCC
Confidence 45888888 79999999864
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-33 Score=245.85 Aligned_cols=278 Identities=18% Similarity=0.230 Sum_probs=229.5
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~v 224 (536)
..+++..|++.|.-+.|+++|++|||++.|.+..+|.+.... ..+++.+|..+|..+ +||.++|++++.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 457889999999999999999999999999999999986543 477888998888655 599999999999999999
Q ss_pred EEcccCccceecccCcccccceEEe-eCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA 299 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~ 299 (536)
||+.+|.. ...+ .+|...+.+.+| |+..+++|+.|+++..||+... .....+ ....|.+++
T Consensus 296 wDv~tgd~-------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 296 WDVDTGDL-------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLA 361 (519)
T ss_pred ccCCcchh-------------hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEE
Confidence 99998742 1111 234578899999 8899999999999999998643 333333 334566666
Q ss_pred --ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373 300 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 376 (536)
Q Consensus 300 --~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 376 (536)
++|+++++.. |..|++|+.++......+. ...+|++++.+.+++++++.-.+..+++||+... ..+..+
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~------~lv~kY 433 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN------KLVRKY 433 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh------hHHHHh
Confidence 8999887776 9999999998876654443 5668999999999999999999999999999977 778888
Q ss_pred cCCCCC--eEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-
Q 009373 377 IPHTGP--VNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD- 450 (536)
Q Consensus 377 ~~h~~~--v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 450 (536)
.||... |..-+|.+ .++++||.|+.|+||+..+ ..+...+.||...|.+++++|.
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------gkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------GKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-------------------CceeEeecCCcceeeEEecCCCC
Confidence 898764 33445543 7999999999999999988 4556778999999999999886
Q ss_pred --EEEEecCCCeEEEEeCCc
Q 009373 451 --RIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 451 --~l~sg~~Dg~i~vW~~~~ 468 (536)
++|+||+||+||||....
T Consensus 495 p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCeEEEecCCc
Confidence 999999999999998874
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-33 Score=242.00 Aligned_cols=245 Identities=24% Similarity=0.291 Sum_probs=217.0
Q ss_pred cccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeeeeCCCCceEEEEe--cCCCEEEEEeCC
Q 009373 143 KTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKKLLVAGGTD 219 (536)
Q Consensus 143 ~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d 219 (536)
+........+.|+||+++|..++|+..|++|++++.|-.+++||.++ .++++.+.+|...|.++. |.|+++++++.|
T Consensus 135 ~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 135 FDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred EEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence 33333344789999999999999999999999999999999999987 567777777776665554 999999999999
Q ss_pred CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE
Q 009373 220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY 296 (536)
Q Consensus 220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~ 296 (536)
.+|+.|++.++. ++.++.+|...|..+.. ||..+++++.|.+|++|-+.++++...++ |..+|-
T Consensus 215 ~tik~We~~tg~-------------cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 215 NTIKAWECDTGY-------------CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred cceeEEecccce-------------eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence 999999998874 78889999999999999 78899999999999999999998888777 776666
Q ss_pred EEe--e---------------cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373 297 GLA--P---------------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM 358 (536)
Q Consensus 297 ~~~--~---------------~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i 358 (536)
+++ | .+.++++++ |++|++||+.++.++.++. +|...|..++|+|.|+||+++.+|+++++
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 665 2 135888888 9999999999999999996 79999999999999999999999999999
Q ss_pred EEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEEC
Q 009373 359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 407 (536)
||+++. .+..++.+|..-|++++|+. .++++|+-|.++++|.-
T Consensus 361 wdl~~~------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNL------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccc------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 78999999999999999974 69999999999999964
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=238.97 Aligned_cols=275 Identities=19% Similarity=0.304 Sum_probs=232.1
Q ss_pred eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE
Q 009373 193 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 268 (536)
Q Consensus 193 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 268 (536)
.+.+.+|.+.|.|+. |.+..+++|+.|++++|||+.++. ...++.||-..|..+++ -..++++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------------LkltltGhi~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------------LKLTLTGHIETVRGVAVSKRHPYLFS 210 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------------EEEeecchhheeeeeeecccCceEEE
Confidence 344578999998887 778899999999999999998874 66788899999999999 4479999
Q ss_pred EecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC
Q 009373 269 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG 344 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~ 344 (536)
++.|+.|+.||++..+.+..+. |-..|+|++ |.-..+++++ |.++++||+++...+..+. ||...|..+.+.|..
T Consensus 211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTD 289 (460)
T ss_pred ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCC
Confidence 9999999999999999888776 999999998 6788888888 9999999999999999996 799999999999988
Q ss_pred CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCce
Q 009373 345 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV 422 (536)
Q Consensus 345 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 422 (536)
..+++|+.|++|++||++.+ +...++..|...|.+++.+| ..+++++.| .|+-|++..+.
T Consensus 290 pqvit~S~D~tvrlWDl~ag------kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~----------- 351 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAG------KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE----------- 351 (460)
T ss_pred CceEEecCCceEEEeeeccC------ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc-----------
Confidence 89999999999999999999 77888899999999999998 466666666 69999998742
Q ss_pred eeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCC
Q 009373 423 SRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKG 501 (536)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 501 (536)
....+.+|...+.+++.+.+ ++++|++.|.+.+||..+|...+.......+-.++ ....+++.+|...|
T Consensus 352 --------f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~--sEagI~as~fDktg 421 (460)
T KOG0285|consen 352 --------FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE--SEAGIFASCFDKTG 421 (460)
T ss_pred --------hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccc--cccceeEEeecccC
Confidence 22336788899999997766 99999999999999999998877664433322221 23345677888888
Q ss_pred CCcceeEe
Q 009373 502 GRTDQCSV 509 (536)
Q Consensus 502 ~~~~~~~~ 509 (536)
.+|.+|--
T Consensus 422 ~rlit~ea 429 (460)
T KOG0285|consen 422 SRLITGEA 429 (460)
T ss_pred ceEEeccC
Confidence 88887743
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-30 Score=239.62 Aligned_cols=342 Identities=18% Similarity=0.197 Sum_probs=260.1
Q ss_pred cCCccceeeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCc
Q 009373 145 FLGRYSIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGF 221 (536)
Q Consensus 145 ~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~ 221 (536)
|...-.+-.+.||...|.+++|-|... .++||+.|++|.+|+-..-+-..++..|..-|.|+ +|||.++++.+.||+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 444456789999999999999998754 89999999999999977777777888888877766 499999999999999
Q ss_pred EEEEEcccCccceecccCcccccceEEee---CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccc---
Q 009373 222 IHCWRAVEVLPHLFDISGSEKQNTQFRLW---EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--- 293 (536)
Q Consensus 222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--- 293 (536)
|.+||-.+++ .+..+. +|.+.|.+++| |+..+++++.|.+++|||+.+.++++++....
T Consensus 214 i~iyDGktge-------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 214 IYIYDGKTGE-------------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred EEEEcCCCcc-------------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 9999988774 333343 89999999999 78899999999999999999999999987333
Q ss_pred --cEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373 294 --WVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 371 (536)
Q Consensus 294 --~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 371 (536)
.|-++-+.+.++....+|.|.+++...+..+..+. +|...|+++..+|++++|++|+.||.|.-|+...+..
T Consensus 281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~----- 354 (603)
T KOG0318|consen 281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS----- 354 (603)
T ss_pred ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc-----
Confidence 33444464444444459999999999999877775 7999999999999999999999999999999988731
Q ss_pred eeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCC--CCCCceee--------------------EEee
Q 009373 372 LVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRP--TSGKRVSR--------------------VIEV 428 (536)
Q Consensus 372 ~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~--------------------~~~~ 428 (536)
.-..-.+|...|.+++-+. ..+++.+.|.++++.++....-.... ..+..... +...
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 1111267999999999987 89999999999999988532111110 00000000 0011
Q ss_pred CCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeE
Q 009373 429 EPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS 508 (536)
Q Consensus 429 ~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 508 (536)
......--+......+++++++.++.|+.||.|+||.+..+...+.... ...+-.++.+++||||..+|+|-
T Consensus 435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~--------~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL--------LEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee--------ecccCCceEEEECCCCcEEEEec
Confidence 1111122344556777888888999999999999999998764332111 11233468999999999999975
Q ss_pred eeccc
Q 009373 509 VAAKK 513 (536)
Q Consensus 509 ~~~~~ 513 (536)
...+.
T Consensus 507 a~rkv 511 (603)
T KOG0318|consen 507 ASRKV 511 (603)
T ss_pred cCCcE
Confidence 44443
No 40
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-32 Score=261.39 Aligned_cols=231 Identities=23% Similarity=0.375 Sum_probs=204.3
Q ss_pred CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373 146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH 223 (536)
Q Consensus 146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~ 223 (536)
......+++.||.++|+.+.|+|+.++|+++|.|++||+|.+.+..++-.+.+|..+|.++. |.|-+++||+.|++.+
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 44456778999999999999999999999999999999999999999999999999987655 8899999999999999
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe-
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA- 299 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~- 299 (536)
+|.... ..+.+.+.+|.+.|.|+.| +..++++||.|.+|++||+.+|..++.|. |.++|.+++
T Consensus 519 LWs~d~-------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 519 LWSTDH-------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred eeeccc-------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 999855 3477788999999999999 66899999999999999999999999998 999999987
Q ss_pred -ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc----------
Q 009373 300 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE---------- 367 (536)
Q Consensus 300 -~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---------- 367 (536)
|+|++|++|+ |+.|.+||+.+++.+..+. +|.+.|+++.|+.+|..||+|+.|.+|++||+......
T Consensus 586 Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~ 664 (707)
T KOG0263|consen 586 SPCGRYLASGDEDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSN 664 (707)
T ss_pred cCCCceEeecccCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccccc
Confidence 9999999999 8999999999999999987 69999999999999999999999999999998654322
Q ss_pred --------cccceeeeccCCCCCeEEEEEcC
Q 009373 368 --------ANVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 368 --------~~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
.....+.++.....+|.+|.|..
T Consensus 665 ~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 665 SAITQENNASSLLLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred ccccccCCCCcceeeeeeecCceEEEEEEec
Confidence 11224455555666888888864
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=253.01 Aligned_cols=279 Identities=18% Similarity=0.260 Sum_probs=239.4
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL 231 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 231 (536)
-.+.||...|.+++++.+...++||+ .+.+++|+..+.++++++...-.-..+|.|.++++++|...|.+.++|+.+..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 56789999999999998887777776 57899999999999999987755556677999999999999999999986642
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC-----ceE--------eEeeeccccEE
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-----LKC--------LKVLRHSDWVY 296 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~-----~~~--------~~~~~~~~~v~ 296 (536)
.+.+...|.+.|.+++. ++..+++||.|.+|++||+.- +.. ..++...+.|.
T Consensus 446 -------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 446 -------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred -------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 44556689999999999 888999999999999999642 111 12344667788
Q ss_pred EEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373 297 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 373 (536)
|++ |++++++++- |++|+||-+.+.+....+. ||.-+|.|+..+||+++++|||.|.+|+||-+.-+ .+.
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG------DCH 585 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG------DCH 585 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccc------hhh
Confidence 876 9999999999 9999999999998887775 79999999999999999999999999999999999 788
Q ss_pred eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE--ecC
Q 009373 374 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGA 449 (536)
Q Consensus 374 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~ 449 (536)
..+.+|...|.++.|-| ..++++|.|+.|+-||-... .....+.+|...|++++ ++|
T Consensus 586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-------------------e~iq~L~~H~~ev~cLav~~~G 646 (888)
T KOG0306|consen 586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-------------------EEIQKLDGHHSEVWCLAVSPNG 646 (888)
T ss_pred hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh-------------------hhheeeccchheeeeeEEcCCC
Confidence 99999999999999988 58899999999999998874 33455778888877776 556
Q ss_pred CEEEEecCCCeEEEEeCCchh
Q 009373 450 DRIVCGGEEGIVRIWNFSQAF 470 (536)
Q Consensus 450 ~~l~sg~~Dg~i~vW~~~~~~ 470 (536)
++++|+|.|.+||+|.-....
T Consensus 647 ~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred CeEEeccCCceeEeeeccCcc
Confidence 699999999999999977643
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.7e-31 Score=261.46 Aligned_cols=250 Identities=27% Similarity=0.407 Sum_probs=224.4
Q ss_pred ccccCCccceee-eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCC
Q 009373 142 SKTFLGRYSIDV-LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG 220 (536)
Q Consensus 142 ~~~~~~~~~~~~-l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg 220 (536)
.+.....+.+.. +.||.+.|.++++...+++|++|+.|.++++||..+|++...+.+|...+.++...+..+++|+.|.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~ 311 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDN 311 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCc
Confidence 333334445555 9999999999999877899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA 299 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 299 (536)
+|++|+++++ ..+..+.+|.++|.++..+++++++|+.|++|++||+.+++++..+. |..+|+++.
T Consensus 312 tVkVW~v~n~-------------~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 312 TVKVWDVTNG-------------ACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred eEEEEeccCc-------------ceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence 9999999765 36677777999999999999999999999999999999999999998 999999999
Q ss_pred ecC-CEEEEec-CCcEEEEeCCCC-cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373 300 PHD-TTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 376 (536)
Q Consensus 300 ~~~-~~l~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 376 (536)
.++ ..+++|+ |++|++||+++. +++.++. +|..-+..+.+ .+++|++++.||+|++||..++ .++.++
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~------~~~~~~ 449 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG------ECLRTL 449 (537)
T ss_pred ecCcceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccccccEEEeecccC------ceeeee
Confidence 877 8999998 999999999999 8888886 68888866655 5789999999999999999998 678888
Q ss_pred cC-CCCCeEEEEEcCCeEEEEeCCCcEEEEECCccccc
Q 009373 377 IP-HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS 413 (536)
Q Consensus 377 ~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 413 (536)
.+ |.+.|.++++....+++++.||.+++||++++...
T Consensus 450 ~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 450 EGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ccCCcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence 88 78999999998788999999999999999986443
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8e-33 Score=245.93 Aligned_cols=269 Identities=19% Similarity=0.244 Sum_probs=220.3
Q ss_pred HhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 009373 109 CERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE 188 (536)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~ 188 (536)
..+|......+.+++.......|......- -..++.|.++|+++.|++++.+++||+.+|.|++|+..
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnF------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNF------------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeH------------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 345655545555555555666675533321 23678999999999999999999999999999999975
Q ss_pred CCceeeeeCCCC-ceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC--
Q 009373 189 DGFSIASSKPLG-CTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL-- 263 (536)
Q Consensus 189 ~~~~~~~~~~~~-~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-- 263 (536)
- ..++.++.|. ..|.++ +|+...+++++.||+|+|||..... ....+.+|.-.|.+++|.+
T Consensus 169 m-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-------------ee~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 169 M-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-------------EERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred h-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-------------hhheeccCCCCcceeccCCcc
Confidence 4 3444444443 666555 5888999999999999999986543 4556789999999999954
Q ss_pred CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEE
Q 009373 264 TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLA 339 (536)
Q Consensus 264 ~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 339 (536)
..+++||.|..|++||.+++.++.++. |...|..+. +++++|++++ |..+++||+++.+.+.++. +|...++++.
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~ 313 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLT 313 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeec
Confidence 689999999999999999999999987 999999987 8899999999 9999999999999888886 7999999999
Q ss_pred EeCC-CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 340 RSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 340 ~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
|+|- ..+|.+|+.||.|..|.+.... .....-.+|...|++++|+| ..|++|+.|.++++|.-..
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~~-----p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLEE-----PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cccccccceeeccCCCceEEEeccccc-----cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 9994 5688999999999999998542 22233358999999999998 7899999999999997653
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-31 Score=249.99 Aligned_cols=370 Identities=17% Similarity=0.289 Sum_probs=284.2
Q ss_pred HHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 009373 105 KEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRM 184 (536)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~i 184 (536)
+.+.+.+|......+.+.+.+.+...|...... -...++||.+.|+..-|..+.+++++.|.|+.|++
T Consensus 108 ~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~------------Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 108 AAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE------------GLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKF 175 (888)
T ss_pred cceEEEEEcccCceEeecCCCccEEEEEeccce------------eeEEeecchHHHhHHhccCCCeEEEEeccCceEEE
Confidence 444455554444444444455555667654443 34589999999999999988899999999999999
Q ss_pred EECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc------------------------c--------
Q 009373 185 WHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL------------------------P-------- 232 (536)
Q Consensus 185 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------------------~-------- 232 (536)
||+++..+..+.-.|.+.+.+++.+++.+++++.|+.+++|++.... .
T Consensus 176 WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s 255 (888)
T KOG0306|consen 176 WDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS 255 (888)
T ss_pred EecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence 99999999999999999999999888999999999999999981100 0
Q ss_pred -------------------------------------c------------------------------------------
Q 009373 233 -------------------------------------H------------------------------------------ 233 (536)
Q Consensus 233 -------------------------------------~------------------------------------------ 233 (536)
.
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~ 335 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE 335 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence 0
Q ss_pred ------------eecccCc------ccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeecccc
Q 009373 234 ------------LFDISGS------EKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW 294 (536)
Q Consensus 234 ------------~~~~~~~------~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 294 (536)
.+.+..+ ........+.+|...|.++++ +.+.++..+..+.+++|+..+.+++.++... .
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y 414 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-Y 414 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-c
Confidence 0000000 000112455689999999999 4444444555789999999999999999855 4
Q ss_pred EEEE--eecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc----
Q 009373 295 VYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE---- 367 (536)
Q Consensus 295 v~~~--~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---- 367 (536)
+.+. .|.+++++.|. .|.+.+||+.+...+.++. +|.+.|.+++.+||+..+++||.|.+|++||..-....
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQ 493 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccc
Confidence 4433 39999999999 7999999999999888886 79999999999999999999999999999997421110
Q ss_pred --------------------------------------------cccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCc
Q 009373 368 --------------------------------------------ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK 401 (536)
Q Consensus 368 --------------------------------------------~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~ 401 (536)
..++....+.||.-||.|+..+| ..++|||.|..
T Consensus 494 ~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 494 KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc
Confidence 11223345678999999998876 78999999999
Q ss_pred EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhh
Q 009373 402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARAL 479 (536)
Q Consensus 402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~ 479 (536)
|++|-+.= ..+.+.+.+|..+|+++.|-|+ .+.|+|.|+.|+-||-..=+.+.....
T Consensus 574 VKiWGLdF-------------------GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-- 632 (888)
T KOG0306|consen 574 VKIWGLDF-------------------GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-- 632 (888)
T ss_pred eEEecccc-------------------chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc--
Confidence 99998753 4566678999999999998887 889999999999999876555544322
Q ss_pred hcccchhHHHhhhhccccccCCCCcceeEeecccCCcC
Q 009373 480 RGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMN 517 (536)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 517 (536)
.....-+++.+|+|+.+.+++.+..-+.+.
T Consensus 633 --------H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 633 --------HHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred --------chheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 233356899999999999999877766554
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=5.4e-31 Score=225.52 Aligned_cols=274 Identities=21% Similarity=0.298 Sum_probs=222.6
Q ss_pred eeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE
Q 009373 193 IASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 268 (536)
Q Consensus 193 ~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 268 (536)
+..+.+|.+.|+.. .|+|..|++|+.|..|.+|++... ......+.+|.++|..+.| +++.+++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd------------ceN~~~lkgHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD------------CENFWVLKGHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc------------ccceeeeccccceeEeeeeccCCCEEEE
Confidence 44567888888765 599999999999999999997543 2345567799999999999 8999999
Q ss_pred EecCCeEEEEeCCCceEeEeee-ccccEEEEeec---CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC
Q 009373 269 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 343 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~ 343 (536)
++.|++|+.||.++|+++..++ |...|+++.|. ..++.+++ |+++++||+++...+.++. ...+++++.|..+
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDT 185 (338)
T ss_pred ecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEeccc
Confidence 9999999999999999999998 88889988843 34566666 7999999999999988874 6778999999999
Q ss_pred CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCc
Q 009373 344 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR 421 (536)
Q Consensus 344 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 421 (536)
+..+.+|+-|+.|++||++.+ .....+.||..+|+.+..++ .++.+-+.|.++++||++.....
T Consensus 186 s~qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-------- 251 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-------- 251 (338)
T ss_pred ccceeeccccCceeeeccccC------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC--------
Confidence 999999999999999999988 78899999999999999975 79999999999999999864322
Q ss_pred eeeEEeeCCCeeeecccc----ccE--EEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcc
Q 009373 422 VSRVIEVEPPQRMLHGFE----CNL--LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT 495 (536)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~----~~v--~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (536)
.++..++.+|. ... .+++++++.+.+|+.|..+++||......+..+ ++ ..-.+.++
T Consensus 252 -------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl----pG------h~gsvn~~ 314 (338)
T KOG0265|consen 252 -------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL----PG------HYGSVNEV 314 (338)
T ss_pred -------CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc----CC------cceeEEEe
Confidence 22233333332 223 345556669999999999999998875444332 22 23346789
Q ss_pred ccccCCCCcceeEeec
Q 009373 496 EMSSKGGRTDQCSVAA 511 (536)
Q Consensus 496 ~~~~~g~~~~~~~~~~ 511 (536)
+|+|.-..|.+|+.+-
T Consensus 315 ~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 315 DFHPTEPIILSCSSDK 330 (338)
T ss_pred eecCCCcEEEEeccCc
Confidence 9999999999998754
No 46
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.9e-31 Score=253.89 Aligned_cols=296 Identities=17% Similarity=0.195 Sum_probs=209.5
Q ss_pred cCCccceeeee-CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE-EEEecCC------------
Q 009373 145 FLGRYSIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI-RAVAADK------------ 210 (536)
Q Consensus 145 ~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~------------ 210 (536)
+..-+..+.+. +|.++|.+|.|++||+|||+|+.||.|+||.+...+....-.+....+ ..+...+
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 34455677788 999999999999999999999999999999986533211111100000 0000000
Q ss_pred --C--EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceE
Q 009373 211 --K--LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKC 285 (536)
Q Consensus 211 --~--~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~ 285 (536)
. ..-.+.....+ +.+ .....-...++..+.||.+.|.++.| ..++|+++|.|+||++|++...+|
T Consensus 333 ~~~~s~~~~~~~s~~~-~~p---------~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~C 402 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCV-LLP---------LKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKEC 402 (712)
T ss_pred cccccccccccCCccc-cCC---------CccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcce
Confidence 0 01111111111 111 01111224577789999999999999 788999999999999999999999
Q ss_pred eEeeeccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373 286 LKVLRHSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361 (536)
Q Consensus 286 ~~~~~~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~ 361 (536)
+..|.|.+.|+|++ -|.+++++|+ |+.|+||++...+.+.-.. ...-|++++|.|+|++.++|+.+|.+++|+.
T Consensus 403 L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 403 LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDT 480 (712)
T ss_pred eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence 99999999999999 4788999999 9999999999887766553 5588999999999999999999999999999
Q ss_pred ccCcccccccee--ee-ccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee
Q 009373 362 INDCTEANVLLV--AT-WIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 435 (536)
Q Consensus 362 ~~~~~~~~~~~~--~~-~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (536)
...+........ .. -..|. .|+++.|.| +.|++.+.|..|+|+|.++.....+... .-
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG---------------~~ 544 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG---------------FR 544 (712)
T ss_pred cCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc---------------cc
Confidence 877432111110 00 01233 899999975 6788899999999999965322211100 00
Q ss_pred ccccccEEEEEecCCEEEEecCCCeEEEEeCCc
Q 009373 436 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 436 ~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~ 468 (536)
.++.-.-.++..+|.+|++|++|..|++|+.+.
T Consensus 545 n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 545 NTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 112223345666888999999999999999854
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1e-31 Score=244.09 Aligned_cols=239 Identities=20% Similarity=0.292 Sum_probs=206.1
Q ss_pred ccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-CCceEEEEecCC-CEEEEEeCCCcEEEE
Q 009373 148 RYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADK-KLLVAGGTDGFIHCW 225 (536)
Q Consensus 148 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~-~~l~sg~~dg~i~vw 225 (536)
+..++++.||..+|..++|+++|..++|+|.|++|++||+++|+++..+.. ....+..+.|++ +.+++|+.|+.|+.|
T Consensus 248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 346899999999999999999999999999999999999999999998854 445667777887 899999999999999
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA 299 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~ 299 (536)
|+++++ .+..+..|-+.|..+.| ++.++++.+.|++++||+.+.+-.++.+. |..+...+.
T Consensus 328 DiRs~k-------------vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~ 394 (503)
T KOG0282|consen 328 DIRSGK-------------VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH 394 (503)
T ss_pred eccchH-------------HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence 998864 56667789999999999 88999999999999999999887766554 666767777
Q ss_pred ecCCEEEEec-CCcEEEEeCCCCcE---EEEEcccccc--ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373 300 PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 300 ~~~~~l~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~--~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 373 (536)
|++.++++-+ |+.|.+|.+...-. ...+ .+|.. --..+.|||||.+|++|+.||.+.+||.++. +.+
T Consensus 395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f-eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~------kl~ 467 (503)
T KOG0282|consen 395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF-EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT------KLV 467 (503)
T ss_pred CCCCeehhhccCceEEEEecccccccCHhhhh-cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh------hhh
Confidence 9999999988 99999998654311 1222 35643 4556889999999999999999999999998 788
Q ss_pred eeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEE
Q 009373 374 ATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLID 406 (536)
Q Consensus 374 ~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd 406 (536)
..+.+|.+++..+.|+| ..+++++.||.|++||
T Consensus 468 ~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 89999999999999987 7999999999999996
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.5e-30 Score=250.51 Aligned_cols=241 Identities=22% Similarity=0.335 Sum_probs=213.7
Q ss_pred eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccC
Q 009373 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~ 230 (536)
.++..+..|..++|+|....++++-..|.|++||..-+.++..+..|.++|..+. |.+.++++|+.|..|+||+..+
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-
Confidence 4556678899999999999999999999999999999999999999999997665 8899999999999999999865
Q ss_pred ccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEE
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV 305 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l 305 (536)
..+..++.||-+.|..+.|+. ..++++|+|.+|+||+..+.+++..+. |...|.|.+ |....+
T Consensus 83 ------------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 83 ------------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred ------------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 458889999999999999954 579999999999999999999999998 999999987 778899
Q ss_pred EEec-CCcEEEEeCCCC----------------------------cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373 306 ASTS-GSDVYIWDTNSG----------------------------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356 (536)
Q Consensus 306 ~~~~-d~~i~i~d~~~~----------------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i 356 (536)
++++ |.+|+|||+..- ..+..+..||...|+-++|+|.-.++++|+.|..|
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 9999 999999998531 11233346899999999999999999999999999
Q ss_pred EEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373 357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 357 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
++|.+...+. -.+-+..+|.+.|.++-|+| +++++.|.|++|+|||+...
T Consensus 231 KlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 231 KLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred eEEEeccccc----eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 9999876532 35677889999999999999 89999999999999999764
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.7e-30 Score=226.42 Aligned_cols=262 Identities=21% Similarity=0.333 Sum_probs=216.3
Q ss_pred hccccCCccceeeeeCccccEEEEEEecCCC---EEEEEeCCCcEEEEECCCCce----eeeeCCCCceEEEEe--cCCC
Q 009373 141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAK---LLFTSGYDSIVRMWHLEDGFS----IASSKPLGCTIRAVA--ADKK 211 (536)
Q Consensus 141 ~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~---~l~sgs~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~--~~~~ 211 (536)
|.+..+|+. ...+.||+++|.+++|.-... .|+++|.|.++++|..+.+.. +....+|...|-+++ +++.
T Consensus 128 riWd~~Gk~-~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt 206 (423)
T KOG0313|consen 128 RIWDLKGKS-IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT 206 (423)
T ss_pred EEEecCCce-EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC
Confidence 445555654 788999999999888865443 599999999999999987754 333468999998887 8899
Q ss_pred EEEEEeCCCcEEEEEcccCcccee------------cccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEE
Q 009373 212 LLVAGGTDGFIHCWRAVEVLPHLF------------DISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVW 278 (536)
Q Consensus 212 ~l~sg~~dg~i~vwd~~~~~~~~~------------~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iw 278 (536)
.+++|+.|.++++|+.++.....+ .........+...+.||..+|.++.| +...+++++.|.+|+.|
T Consensus 207 r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~W 286 (423)
T KOG0313|consen 207 RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVW 286 (423)
T ss_pred eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEE
Confidence 999999999999999443221111 11122345678889999999999999 88899999999999999
Q ss_pred eCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCc--EEEEEccccccceEEEEEeCCCC-EEEEEcC
Q 009373 279 DRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGD-FLFTGGE 352 (536)
Q Consensus 279 d~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~--~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~ 352 (536)
|+.++..+..+......++++ +..++|++|+ |..+++||.+++. .+..-..+|.+.|.++.|+|... .|++|+.
T Consensus 287 Dletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 287 DLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred EeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence 999999999999888899988 7788899888 8999999999863 33333358999999999999664 6889999
Q ss_pred CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECC
Q 009373 353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~ 408 (536)
|+++++||+++.. .++..+.+|...|.++.|.. ..+++||.|.+|+++.-.
T Consensus 367 D~t~klWDvRS~k-----~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 367 DNTVKLWDVRSTK-----APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCeEEEEEeccCC-----CcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 9999999999983 38899999999999999975 699999999999998754
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=215.29 Aligned_cols=269 Identities=18% Similarity=0.244 Sum_probs=211.6
Q ss_pred EEEEEecC-CCEEEEEe-------CCCcEEEEECCCCceeeeeCC--CCceEEEEe---cCCCEEEEEeCCCcEEEEEcc
Q 009373 162 LTVFVLAS-AKLLFTSG-------YDSIVRMWHLEDGFSIASSKP--LGCTIRAVA---ADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 162 ~~v~~~~~-~~~l~sgs-------~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~ 228 (536)
+++.|+|- .++||.+. ..|.+.|-++..++-+..+.. -...+..+. ...+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46788883 23333322 368899999875544443322 223444444 346789999999999999964
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ec
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PH 301 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~ 301 (536)
.. ..++..++.|...|.++.| +...++++|.|++|++|+...++.+.++. |...|+... ..
T Consensus 92 ~~------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 92 MP------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred CC------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence 33 3477888999999999999 55778889999999999999999999988 888888877 35
Q ss_pred CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373 302 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379 (536)
Q Consensus 302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 379 (536)
++++++++ |+.+++||++..-....+. .|..+|.++.|+. +...|+||+.|+.|++||+++-. .++..+.+|
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh 233 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGH 233 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCC
Confidence 77888888 9999999998754444454 6999999999987 55789999999999999999885 568888999
Q ss_pred CCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec---CCEEE
Q 009373 380 TGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---ADRIV 453 (536)
Q Consensus 380 ~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 453 (536)
.-.|..+.|+| ..|++++.|-++++||.... .........|+.-+..++++ +.++|
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~------------------ds~~e~~~~HtEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ------------------DSAIETVDHHTEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEecccccc------------------hhhhhhhhccceEEeccccccccCceee
Confidence 99999999998 69999999999999998753 22233345677777777765 45999
Q ss_pred EecCCCeEEEEeC
Q 009373 454 CGGEEGIVRIWNF 466 (536)
Q Consensus 454 sg~~Dg~i~vW~~ 466 (536)
+.|.|+.++||+.
T Consensus 296 s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 STGWDELLYVWNP 308 (311)
T ss_pred ecccccceeeecc
Confidence 9999999999984
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.5e-30 Score=238.55 Aligned_cols=246 Identities=16% Similarity=0.184 Sum_probs=219.5
Q ss_pred hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEe
Q 009373 140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGG 217 (536)
Q Consensus 140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~ 217 (536)
...|+...+..++.+.-..-+|++..|-+..+.+++|+.|..|+||+..+++.+..+.+|...+.++. |...+++++|
T Consensus 37 V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS 116 (794)
T KOG0276|consen 37 VQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS 116 (794)
T ss_pred eEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC
Confidence 45566667778899999999999999999999999999999999999999999999999999998876 8889999999
Q ss_pred CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccc
Q 009373 218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSD 293 (536)
Q Consensus 218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~ 293 (536)
.|-+|++||++.+ ..+..++.||+..|.+++| |.+.+++++-|++|++|.+.+..+..++. |..
T Consensus 117 DDm~iKlW~we~~------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek 184 (794)
T KOG0276|consen 117 DDMTIKLWDWENE------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK 184 (794)
T ss_pred CccEEEEeeccCc------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence 9999999999765 6688899999999999999 66899999999999999999999999988 999
Q ss_pred cEEEEe----ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccc
Q 009373 294 WVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA 368 (536)
Q Consensus 294 ~v~~~~----~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~ 368 (536)
.|+|+. .+..++++|+ |.+++|||.++..+++++. ||...|..+.|+|.-.++++|++||+++||+-.+-
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---- 259 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---- 259 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcEEEEecCCccEEEecCcce----
Confidence 999998 3455999998 7899999999999999996 79999999999999999999999999999998887
Q ss_pred ccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEE
Q 009373 369 NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSL 404 (536)
Q Consensus 369 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v 404 (536)
+...++.-.-..|+|++-.+ +.++.|..+|.|.+
T Consensus 260 --~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 260 --KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred --ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 45555666678899999753 67777777776654
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.2e-29 Score=210.97 Aligned_cols=237 Identities=24% Similarity=0.358 Sum_probs=200.4
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccC
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~ 230 (536)
.+|+..|++++|+|.|++|++||.|.++.||.-..+ +++.++.+|...|-+++ ++|++||+++.|..|-||.+..+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 479999999999999999999999999999997654 68899999998887665 89999999999999999998754
Q ss_pred ccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCC---CceEeEeee-ccccEEEEe--ecC
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRA---LLKCLKVLR-HSDWVYGLA--PHD 302 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~---~~~~~~~~~-~~~~v~~~~--~~~ 302 (536)
....+...+.+|+..|..+.|++ +.|+++|.|.+|++|+-. ...+.+++. |...|.+++ +.|
T Consensus 138 ----------dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G 207 (312)
T KOG0645|consen 138 ----------DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG 207 (312)
T ss_pred ----------CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence 34567888999999999999977 899999999999999866 446778887 777888886 778
Q ss_pred CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee-eccCCC
Q 009373 303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA-TWIPHT 380 (536)
Q Consensus 303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~ 380 (536)
..+++++ |++++||-..+ .+...|...++.+.|. ...|++++.|+.|++|........+....+. .-..|.
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe 280 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE 280 (312)
T ss_pred ceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccc
Confidence 8999998 89999998663 2334588899999998 5679999999999999877543333344333 445799
Q ss_pred CCeEEEEEcC---CeEEEEeCCCcEEEEECC
Q 009373 381 GPVNSLAFEF---PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 381 ~~v~~l~~~~---~~l~s~s~dg~i~vwd~~ 408 (536)
..|++++|+| ++|++|+.||.|++|.+.
T Consensus 281 ~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 VDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999987 799999999999999874
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.9e-31 Score=234.26 Aligned_cols=269 Identities=17% Similarity=0.247 Sum_probs=215.2
Q ss_pred HhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 009373 111 RWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG 190 (536)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~ 190 (536)
.|+.....+++++.+....+|+..+..+ + ...+++.||..+|.-+.|+||.++|++|+.|..+.+||+.+|
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~--------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDVH-F--------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCcc-e--------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 4444444456666677777888877664 1 246799999999999999999999999999999999999999
Q ss_pred ceeeeeCC-CC--ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCC-ccCEEEEEE--eCC
Q 009373 191 FSIASSKP-LG--CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL--DLT 264 (536)
Q Consensus 191 ~~~~~~~~-~~--~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~ 264 (536)
.....+.. +. ....++.|||..+++|+.|+++..||+.... .....+- ...|.+++. ||+
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--------------~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--------------LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--------------hhcccccccceeEEEEEcCCCc
Confidence 88776643 23 3445566999999999999999999987642 1112222 245778887 999
Q ss_pred EEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccce--EEEE
Q 009373 265 RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNT--KSLA 339 (536)
Q Consensus 265 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i--~~l~ 339 (536)
++++.+.|..|++++.++......+....+|++++ .+++++.+.- +..+++||++..+.++.+. ||...- ..-+
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSC 446 (519)
T ss_pred EEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEec
Confidence 99999999999999999887777777777788776 6777777666 8999999999888888876 566542 2333
Q ss_pred EeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCc
Q 009373 340 RSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 340 ~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~ 409 (536)
|.- +..++++|++|+.|+||+..++ +++..+.||...|++++|+| ..+|+||.||+|+||....
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sg------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISG------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCC------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 432 4479999999999999999999 89999999999999999987 6999999999999998764
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.8e-31 Score=229.58 Aligned_cols=281 Identities=16% Similarity=0.236 Sum_probs=227.2
Q ss_pred cceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373 149 YSIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 227 (536)
.-+..|.||.++|.|++=+|.. ..++||+.||.|+|||+....++.++.+|.+.|..++.+...+++++.|.+|+.|.+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 3467889999999999999976 789999999999999999999999999999999999988799999999999999987
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ec-
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH- 301 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~- 301 (536)
+.. +..++.+ .+.+..+.- .++.++||+. .|.|||.....++..+. ..+.|.++. |.
T Consensus 137 ~~~--------------p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 137 DGP--------------PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred cCC--------------cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCc
Confidence 542 2333322 344555554 4567888875 59999999888888888 667788887 33
Q ss_pred CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373 302 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 380 (536)
Q Consensus 302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 380 (536)
...|+++. |++|.+||++++.++..+. .....+.++|+|.+-.+++|++|..++.||++... .++....+|.
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhv 272 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHV 272 (433)
T ss_pred chheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc-----ccchhhcccc
Confidence 34566664 9999999999999988874 56677899999988889999999999999999875 6788889999
Q ss_pred CCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCC--EEEEe
Q 009373 381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGAD--RIVCG 455 (536)
Q Consensus 381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~l~sg 455 (536)
+.|.+++|+| .-+++||.|.+|+||.++.+.... +.+. .-..|+++.++.+ +++||
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd-------------------iYhtkRMq~V~~Vk~S~Dskyi~SG 333 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD-------------------IYHTKRMQHVFCVKYSMDSKYIISG 333 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchh-------------------hhhHhhhheeeEEEEeccccEEEec
Confidence 9999999997 789999999999999998642110 0111 1134667666554 99999
Q ss_pred cCCCeEEEEeCCchhhH
Q 009373 456 GEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 456 ~~Dg~i~vW~~~~~~~~ 472 (536)
|+|+.|++|.....+.+
T Consensus 334 Sdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 334 SDDGNVRLWKAKASEKL 350 (433)
T ss_pred CCCcceeeeecchhhhc
Confidence 99999999997754443
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=250.99 Aligned_cols=239 Identities=28% Similarity=0.431 Sum_probs=207.9
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 226 (536)
..+.+.+|...|.+++|+|++.++++|+.|++|+|||+ ..+..++++.+|...|.+++ |+++++++|+.|++|++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 35677999999999999999999999999999999999 56689999999999988776 8889999999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce--EeEeee-ccc--cEEEEe
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK--CLKVLR-HSD--WVYGLA 299 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~-~~~--~v~~~~ 299 (536)
++++. +...+.+|.+.|++++| ++..|++++.|+.|++||+.++. +...+. +.. .++++.
T Consensus 275 ~~~~~-------------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 275 VRTGE-------------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ 341 (456)
T ss_pred ccCCe-------------EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence 98753 78889999999999999 88999999999999999999999 455555 222 466665
Q ss_pred --ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccc---eEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373 300 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN---TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 300 --~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 373 (536)
+++.+++++. |+.+++||+..+..+..+. +|... +.+...++.+.++++|+.|+.|++||+.+. ..+
T Consensus 342 fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~------~~~ 414 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG------GIL 414 (456)
T ss_pred ECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc------chh
Confidence 8999999999 7899999999999998886 46553 444556788999999999999999999987 678
Q ss_pred eeccCC-CCCeEEEEEcC--CeEEEEe--CCCcEEEEECC
Q 009373 374 ATWIPH-TGPVNSLAFEF--PWLVSAA--GDGKLSLIDVR 408 (536)
Q Consensus 374 ~~~~~h-~~~v~~l~~~~--~~l~s~s--~dg~i~vwd~~ 408 (536)
..+.+| ...+..+++++ +++++++ .|+.+++|...
T Consensus 415 ~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 415 QRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 888999 89999999986 7888888 68999999754
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=217.67 Aligned_cols=240 Identities=22% Similarity=0.294 Sum_probs=214.1
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE 229 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~ 229 (536)
+.++.||.+.|.+..++.+....|+++.|-+.+|||.-+|..+.++. .|-....+|+.|.++|++|+.+..++|+|++.
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 67999999999999999888899999999999999999999988874 35556677788999999999999999999976
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEE
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV 305 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l 305 (536)
.. .+...+.+|.+.|..+.| ..+.+++.+.|++||+||.+++..++.+.....|+++. ++|+++
T Consensus 132 p~------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 132 PK------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRIL 199 (334)
T ss_pred CC------------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEE
Confidence 53 356668899999999999 66788999999999999999999999999888888876 899999
Q ss_pred EEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec-cCCCCCeE
Q 009373 306 ASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-IPHTGPVN 384 (536)
Q Consensus 306 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~ 384 (536)
..+..+.|.+||..+...+..+. -...|.+...+|+...+++|++|..++.||..++ ..+..+ .+|.++|.
T Consensus 200 Tia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg------eEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 200 TIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG------EEIGSYNKGHFGPVH 271 (334)
T ss_pred EEecCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCC------ceeeecccCCCCceE
Confidence 99999999999999999998875 5667899999999999999999999999999999 445554 89999999
Q ss_pred EEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373 385 SLAFEF--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 385 ~l~~~~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
|+.|+| ...++||.||+|++|.....
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCC
Confidence 999997 68889999999999998654
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.3e-30 Score=229.75 Aligned_cols=281 Identities=19% Similarity=0.258 Sum_probs=228.1
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 226 (536)
...+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..+.+.++. +++..+++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 45778899999999999998999999999999999997766 6677788878887776 7789999999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCE
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTT 304 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 304 (536)
+... ....++.+|++.|+++.| ....+++|+.|.+|++||+....|.+++-....+..|......
T Consensus 248 vd~~-------------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~ 314 (459)
T KOG0288|consen 248 VDSL-------------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISD 314 (459)
T ss_pred ccch-------------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEeccee
Confidence 9664 366788999999999999 3444999999999999999999999988877888888877888
Q ss_pred EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373 305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 383 (536)
Q Consensus 305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 383 (536)
++++. |++|++||.++..+...+. -.+.|+++..+++|..|.+++.|.++.++|+++......+.......+ ...
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a--sDw 390 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA--SDW 390 (459)
T ss_pred eeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc--ccc
Confidence 88888 9999999999999999885 455999999999999999999999999999999843211111111122 337
Q ss_pred EEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCCC
Q 009373 384 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEG 459 (536)
Q Consensus 384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg 459 (536)
+.+.|+| .|+++||.||.|+||++.+++....... .+....|++++| +|..|++++.++
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-----------------s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-----------------STSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-----------------CCCCcceEEEEEcCCCchhhcccCCc
Confidence 8899987 7999999999999999988533221111 111113555555 556999999999
Q ss_pred eEEEEe
Q 009373 460 IVRIWN 465 (536)
Q Consensus 460 ~i~vW~ 465 (536)
.+.+|.
T Consensus 454 ~v~lW~ 459 (459)
T KOG0288|consen 454 AVTLWT 459 (459)
T ss_pred ceEecC
Confidence 999993
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.6e-28 Score=205.66 Aligned_cols=290 Identities=20% Similarity=0.281 Sum_probs=221.9
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE 229 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~ 229 (536)
-.++||..+++.+.|+.+|.+|.+++.|.+..||-..+|+.+.++.+|.+.|+++. .+.+.+++|+.|.++++||+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 36789999999999999999999999999999999999999999999999999987 6678999999999999999998
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-----CCeEEEEeCC-------CceEeEeee-cccc
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRA-------LLKCLKVLR-HSDW 294 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----dg~i~iwd~~-------~~~~~~~~~-~~~~ 294 (536)
|+ .+. ......+|..+.| ++++++.... .+.|.++|++ ..++...+. +...
T Consensus 84 Gk-------------~la-~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 84 GK-------------QLA-TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred Cc-------------EEE-EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 84 222 2345678888888 6666665543 3679999987 344455554 5566
Q ss_pred EEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373 295 VYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 371 (536)
Q Consensus 295 v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 371 (536)
++..- |-++++++|. +|.|..||+++|+.+......|...|+.+.++|+..++++|+.|.+-++||+++- .
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl------~ 223 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL------E 223 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce------e
Confidence 66554 8899999998 8999999999997776665679999999999999999999999999999999987 4
Q ss_pred eeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE--eeCCCeeeeccccccEEEEEe
Q 009373 372 LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI--EVEPPQRMLHGFECNLLSVDI 447 (536)
Q Consensus 372 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~ 447 (536)
.+.++. -..||++.+++| ++++.|+....- |+.+.... .++...++. -+.+......||-+++.++++
T Consensus 224 v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r----~GKFEArFyh~i~eEEigrvkGHFGPINsvAf 295 (327)
T KOG0643|consen 224 VLKTYT-TERPVNTAAISPLLDHVILGGGQEAM---DVTTTSTR----AGKFEARFYHLIFEEEIGRVKGHFGPINSVAF 295 (327)
T ss_pred eEEEee-ecccccceecccccceEEecCCceee---eeeeeccc----ccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence 555543 466999999998 667666654322 22221100 011000000 012223345788888777776
Q ss_pred cCC--EEEEecCCCeEEEEeCCch
Q 009373 448 GAD--RIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 448 ~~~--~l~sg~~Dg~i~vW~~~~~ 469 (536)
+|+ ..+|||+||.||+.-++..
T Consensus 296 hPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CCCCcccccCCCCceEEEEEeccc
Confidence 554 9999999999999988754
No 59
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-27 Score=204.20 Aligned_cols=281 Identities=16% Similarity=0.208 Sum_probs=228.5
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCC--CceEEEEecCCCEEEEEeC--CCcEEEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGT--DGFIHCWR 226 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~--dg~i~vwd 226 (536)
.+.+..-.+.|.++.|+++|.+|++++.|.+++|||..+++.++++..+ +..+.++....+.++.++. |.+|+.-+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3455566788999999999999999999999999999999999988665 6677788766666776666 88999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCC
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDT 303 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 303 (536)
+.+. +.++.+.||...|.+|+. -++.+++++.|++|++||++..++...+. ...++.++.|.|-
T Consensus 87 l~dN-------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GL 153 (311)
T KOG1446|consen 87 LHDN-------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGL 153 (311)
T ss_pred eecC-------------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCc
Confidence 9764 478889999999999999 45899999999999999999999988887 6678888899999
Q ss_pred EEEEecC-CcEEEEeCCCC--cEEEEEc--cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373 304 TVASTSG-SDVYIWDTNSG--CLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 378 (536)
Q Consensus 304 ~l~~~~d-~~i~i~d~~~~--~~~~~~~--~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 378 (536)
++|++.+ ..|++||++.- .+..++. .+...+.+.+.|+|+|++++.++..+.+++.|.-++ ....++.+
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G------~~~~tfs~ 227 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG------TVKSTFSG 227 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC------cEeeeEee
Confidence 9999995 49999999874 3444443 234668899999999999999999999999999888 45555555
Q ss_pred CCCCe---EEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCCEE
Q 009373 379 HTGPV---NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRI 452 (536)
Q Consensus 379 h~~~v---~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l 452 (536)
+...- .+..|.| .++++|+.||+|.+|+++++.+.. .+.+ +...+.++.+++.+.
T Consensus 228 ~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~-------------------~~~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 228 YPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA-------------------VLRGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred ccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee-------------------EecCCCCCCccccccCCcee
Confidence 54322 4566766 799999999999999998853332 2233 567777888999977
Q ss_pred EEecCCCeEEEEeCCch
Q 009373 453 VCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 453 ~sg~~Dg~i~vW~~~~~ 469 (536)
.-++.+..+-+|=....
T Consensus 289 mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 289 MFVSASSNLVFWLPDED 305 (311)
T ss_pred eeeecCceEEEEecccc
Confidence 77777888999977644
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.3e-28 Score=209.62 Aligned_cols=242 Identities=18% Similarity=0.280 Sum_probs=192.8
Q ss_pred eCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCC-Ccee-eeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373 155 YGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED-GFSI-ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE 229 (536)
Q Consensus 155 ~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~ 229 (536)
....+.|.+++|+| ...++++||.||+||+|+++. |..+ +....|.+++++++ .+|..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 35678999999999 566777999999999999987 3333 34567888888776 7899999999999999999987
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEE-e-C--CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEE
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-L--TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV 305 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l 305 (536)
+ ....+..|.++|.++.| . . ..|+|||.|++|+.||.+....+.++..++.++++.-...++
T Consensus 104 ~--------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~ 169 (347)
T KOG0647|consen 104 G--------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMA 169 (347)
T ss_pred C--------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCcee
Confidence 6 45667789999999999 2 2 468999999999999999999999999999999999544444
Q ss_pred -EEecCCcEEEEeCCCCcE-EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcc--ccccceeeecc---C
Q 009373 306 -ASTSGSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT--EANVLLVATWI---P 378 (536)
Q Consensus 306 -~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~~~---~ 378 (536)
++..+..|.+|+++.+.. .........-.++|++..++.+..+.|+-+|.+.|..+..+.. ...+++.+.-. +
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 455599999999977643 2333334556789999999999889999999999999988632 22223333211 1
Q ss_pred CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373 379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
.-..|++|+|+| ..|+|++.||++.+||-...
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 124688999998 79999999999999997754
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.4e-28 Score=205.26 Aligned_cols=277 Identities=18% Similarity=0.169 Sum_probs=223.6
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee--eCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd 226 (536)
+.+++|.+.|.+++|+.+|..|++|+.|+++++|+++....... ..+|...|-.++ +....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 57789999999999999999999999999999999988755443 366776665444 5678999999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCC
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDT 303 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~ 303 (536)
++.++ +........+.+.-... ++++++.++.|..|.+.|.++.+.....+....+.-+. .++.
T Consensus 94 ~r~~k-------------~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 94 IRSGK-------------CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND 160 (313)
T ss_pred eccCc-------------EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence 98764 44444333344433333 88999999999999999999999888887666676666 4455
Q ss_pred EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373 304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
+++..+ .|.|.|.....-+++..+. +|.....|+.|+|+|++||+|+.|-.+.+||+... .+++.+..+.-+
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------iC~R~isRldwp 233 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL------ICERCISRLDWP 233 (313)
T ss_pred EEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHh------hhheeeccccCc
Confidence 555555 6999999999999999996 79999999999999999999999999999999887 889999999999
Q ss_pred eEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCC
Q 009373 383 VNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEE 458 (536)
Q Consensus 383 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~D 458 (536)
|..|.|+ +.+|++||.|..|-|=+++++.+.+.. .+..+.+.++++|+ +||-++.|
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI--------------------~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI--------------------PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCeEEEe--------------------eccCCceeEEecCCCceeeEEecC
Confidence 9999996 689999999999999999987555432 23455667777776 55544443
Q ss_pred ---------CeEEEEeCCc
Q 009373 459 ---------GIVRIWNFSQ 468 (536)
Q Consensus 459 ---------g~i~vW~~~~ 468 (536)
|.|++|-+++
T Consensus 294 k~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 294 KDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred CCCccccccceeEEecCCC
Confidence 5777776653
No 62
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=211.00 Aligned_cols=298 Identities=19% Similarity=0.308 Sum_probs=237.2
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 227 (536)
.++.+.||.++|..++.....+.+.+++.|.+.+||.+++|.++.++.+|.+.|.++. +.+.++++++.|++.+||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 4678889999999999988788999999999999999999999999999999988765 78889999999999999972
Q ss_pred c----cCcc-----------------ceecc------cCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373 228 V----EVLP-----------------HLFDI------SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW 278 (536)
Q Consensus 228 ~----~~~~-----------------~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iw 278 (536)
. .... ...+. .+.....++..+.+|.+.|.+..| .++.+++++.|++..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 1 1110 00011 111223467788899999999999 77899999999999999
Q ss_pred eCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC
Q 009373 279 DRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG 354 (536)
Q Consensus 279 d~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg 354 (536)
|+++++.+..+. |....+-++ |..+++++++ |.+.++||.+..-.-.....||...|+++.|..+ ..+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCc
Confidence 999999999998 888877766 7888888888 9999999999654433333589999999999876 4589999999
Q ss_pred cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373 355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ 432 (536)
Q Consensus 355 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (536)
+|+|||+++.. .++.++. -.++++.++.+. ..++.--.+..|++||+....... -+.
T Consensus 379 TvKvWdLrNMR-----splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR---------------lPr 437 (481)
T KOG0300|consen 379 TVKVWDLRNMR-----SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR---------------LPR 437 (481)
T ss_pred eEEEeeecccc-----Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc---------------CCc
Confidence 99999999874 3444443 466888888864 567777778899999997532211 111
Q ss_pred eeeccccccEEEEEecCC----EEEEecCCCeEEEEeCCch
Q 009373 433 RMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 433 ~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~i~vW~~~~~ 469 (536)
..-.+|..-|.+.++..+ -|.++|.|..+.=|++...
T Consensus 438 tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 438 TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 234678888888888765 6889999999999998764
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1e-27 Score=255.48 Aligned_cols=308 Identities=17% Similarity=0.239 Sum_probs=223.6
Q ss_pred CCcEEEEECCCCceeee-----eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373 179 DSIVRMWHLEDGFSIAS-----SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 251 (536)
Q Consensus 179 dg~v~iwd~~~~~~~~~-----~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (536)
+|.+++|+..+...... +..|...|.++. ++++++++|+.|+.|++|++...... ......+...+ .
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----~~~~~~~~~~~-~ 530 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----GRDIHYPVVEL-A 530 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----ccccccceEEe-c
Confidence 67889999876654433 334677776654 88999999999999999997542100 00001122223 3
Q ss_pred CccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcE
Q 009373 252 HEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCL 323 (536)
Q Consensus 252 h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~ 323 (536)
+...|.+++| ++.+|++++.||+|++||+.+++.+..+. |...|++++ + ++.+|++++ |+.|++||++++..
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 3567899999 35789999999999999999998888876 999999988 3 577888888 89999999999998
Q ss_pred EEEEccccccceEEEEEe-CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-CCeEEEEeCCCc
Q 009373 324 LTVVNGAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGK 401 (536)
Q Consensus 324 ~~~~~~~~~~~i~~l~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~ 401 (536)
+..+. +...+.++.|+ ++|.+|++|+.||.|++||++... .++..+.+|...|.++.|. +.+|++++.|++
T Consensus 611 ~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-----~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ 683 (793)
T PLN00181 611 IGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-----LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT 683 (793)
T ss_pred EEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-----ccceEecCCCCCEEEEEEeCCCEEEEEECCCE
Confidence 88875 34678999995 578999999999999999998762 2456678999999999995 589999999999
Q ss_pred EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE--EecCCEEEEecCCCeEEEEeCCchhhHHHHHH--
Q 009373 402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV--DIGADRIVCGGEEGIVRIWNFSQAFEIERRAR-- 477 (536)
Q Consensus 402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~-- 477 (536)
|++||++....... ..+...+.+|...+..+ ++++.+|++|+.||.|++|+...+..+.....
T Consensus 684 ikiWd~~~~~~~~~-------------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~ 750 (793)
T PLN00181 684 LKLWDLSMSISGIN-------------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT 750 (793)
T ss_pred EEEEeCCCCccccC-------------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence 99999975321000 12234456777655444 45566999999999999999876533211100
Q ss_pred --hhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373 478 --ALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK 513 (536)
Q Consensus 478 --~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 513 (536)
...+.. .........+++|+|+|..+++++.+.+-
T Consensus 751 ~~~~~~~~-~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 751 IDPVSGLE-VDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred CCcccccc-cCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 000000 01122346789999999999988765543
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.8e-29 Score=207.56 Aligned_cols=281 Identities=18% Similarity=0.234 Sum_probs=228.5
Q ss_pred eeeeeCccccEEEEEEec---CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecC--CCEEEEEeCCCcEEEE
Q 009373 151 IDVLYGHTEAVLTVFVLA---SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAAD--KKLLVAGGTDGFIHCW 225 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~---~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~dg~i~vw 225 (536)
..+-.||+.+|..++|+| +|-+|++++.|+.=.+-+-++|.-+.++.+|.+.|+....+ ...-++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 457789999999999986 78899999999999999999999999999999999887744 4467889999999999
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE-eEeee-ccccEEEEe--
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA-- 299 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~-- 299 (536)
|.-++. .+..+ .|..-|.+++| |.++|++|+.++.++|||++..+. ...+. |.+.|..+-
T Consensus 87 ~a~tgd-------------elhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc 152 (334)
T KOG0278|consen 87 DAVTGD-------------ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWC 152 (334)
T ss_pred hhhhhh-------------hhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEe
Confidence 988774 23333 68889999999 778999999999999999987653 33344 888888776
Q ss_pred ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373 300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 378 (536)
Q Consensus 300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 378 (536)
...+.+++++ |++|++||.+++..+.++. ...+|+++.++++|.+|.++ ..+.|.+||..+- ..+..+.
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf------~~lKs~k- 222 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF------GLLKSYK- 222 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccc------cceeecc-
Confidence 4555666655 8999999999999999985 67789999999999977655 5677999998877 3443332
Q ss_pred CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEE
Q 009373 379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVC 454 (536)
Q Consensus 379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s 454 (536)
-...|.+...+| ..+++|+.|+.++.||..++..... ...+|.++|.++.|+++ ..++
T Consensus 223 ~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~------------------~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 223 MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS------------------YNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred CccccccccccCCCceEEecCcceEEEEEeccCCceeee------------------cccCCCCceEEEEECCCCceeec
Confidence 244677778877 6899999999999999998643321 23788889988887766 9999
Q ss_pred ecCCCeEEEEeCCchhhHH
Q 009373 455 GGEEGIVRIWNFSQAFEIE 473 (536)
Q Consensus 455 g~~Dg~i~vW~~~~~~~~~ 473 (536)
||+||+|++|....++...
T Consensus 285 GSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred cCCCceEEEEEecCCCchh
Confidence 9999999999998776553
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.1e-26 Score=188.48 Aligned_cols=284 Identities=17% Similarity=0.254 Sum_probs=225.6
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC------Cc---------eeeeeCCCCceEEE--EecCCCEEEEEe
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED------GF---------SIASSKPLGCTIRA--VAADKKLLVAGG 217 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~------~~---------~~~~~~~~~~~v~~--~~~~~~~l~sg~ 217 (536)
-.-+..|.+++|+|.|.+.+.|+...+.+|-.... +. ..+.-+.|.+.|+| ++|+|.+|++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 34568899999999999999999999999875432 11 11222456666655 559999999999
Q ss_pred CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-e-----CCEEEEEe-cCCeEEEEeCCCceEeEeee
Q 009373 218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-----LTRIYSGS-WDMTVRVWDRALLKCLKVLR 290 (536)
Q Consensus 218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-----~~~l~s~s-~dg~i~iwd~~~~~~~~~~~ 290 (536)
.|.+|++..+..... ........+.-|.+.|..++| + +..|++++ .|..|++-|..+++..+-+.
T Consensus 109 ndk~ik~l~fn~dt~--------~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTC--------NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred CCceEEEEecccccc--------cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 999999987654321 112244556779999999999 2 23566654 57788888999999888887
Q ss_pred -ccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccc-c-----ccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373 291 -HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-H-----VGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361 (536)
Q Consensus 291 -~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~-----~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~ 361 (536)
|.+.|.++- +++-++++|+ |.+|++||++-..++.++... | .+.|.+++..|.|++|++|-.|....+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 999999987 9999999999 899999999999888877431 2 246899999999999999999999999999
Q ss_pred ccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373 362 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 439 (536)
Q Consensus 362 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (536)
+.+ +.++.+.+|...|.++.|+| .++++++.|..|++=|+...... .-+......|.
T Consensus 261 rg~------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~---------------el~~~vv~ehk 319 (350)
T KOG0641|consen 261 RGG------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH---------------ELPIMVVAEHK 319 (350)
T ss_pred eCC------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh---------------cCceEEEEecc
Confidence 999 88999999999999999998 69999999999999998753211 12233445677
Q ss_pred ccEEEEEecCC--EEEEecCCCeEEEEeCC
Q 009373 440 CNLLSVDIGAD--RIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 440 ~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~ 467 (536)
..+....+.+. .+++.+.|.++.+|-+.
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEeccC
Confidence 77777777766 78999999999999764
No 66
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.8e-27 Score=203.84 Aligned_cols=265 Identities=18% Similarity=0.243 Sum_probs=207.7
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 235 (536)
..+.|.+|.|+|.+..|+.+++||++++|++...... ..-.|..++++++ .+...+++|+.||.|+.+|+.++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~----- 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG----- 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeeeccCCceEEEeccCceEEEEEecCC-----
Confidence 4688999999999999999999999999999877433 3345778888888 56789999999999999999886
Q ss_pred cccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEec-CCc
Q 009373 236 DISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSD 312 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~ 312 (536)
....+..|..+|.|+.+ ..+.+++||+|++|++||.+.......+.....|.+++-.++.|+.|. +..
T Consensus 86 ---------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 86 ---------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRK 156 (323)
T ss_pred ---------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCce
Confidence 34557789999999999 468999999999999999998777777777789999997777776655 999
Q ss_pred EEEEeCCCCcEEEEE-ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC---------CC
Q 009373 313 VYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT---------GP 382 (536)
Q Consensus 313 i~i~d~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---------~~ 382 (536)
+.+||+++....... .....-.++++++.|++.-+++++-||.|.+=.+....... ..-..++.|. .+
T Consensus 157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~--skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ--SKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh--hhceeEEeeecccCCceEEEE
Confidence 999999987654422 23456689999999999889999999999886665541111 1222334442 38
Q ss_pred eEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--CCEEEEecC
Q 009373 383 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGE 457 (536)
Q Consensus 383 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~ 457 (536)
|++|+|+| ..++||+.||.|.+||+.+.++.. .++....+|.+++++ |..||.|+.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~-------------------q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK-------------------QLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchhhhh-------------------hccCCCCceEEEEeccCCCeEEEEec
Confidence 99999998 789999999999999998754332 234444555565554 558888764
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.4e-28 Score=208.43 Aligned_cols=284 Identities=15% Similarity=0.258 Sum_probs=226.2
Q ss_pred cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC------------------ceeeeeCCCCceEEEE--ec
Q 009373 149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------------------FSIASSKPLGCTIRAV--AA 208 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~------------------~~~~~~~~~~~~v~~~--~~ 208 (536)
+....+..|.+++.+.+|+|||.++||||.|..|+|.|++.. -.++++..|...|.++ +|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 456788899999999999999999999999999999998721 2466777787777655 58
Q ss_pred CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEe
Q 009373 209 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCL 286 (536)
Q Consensus 209 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~ 286 (536)
....|++|+.|++|+++|+.... .+..+.......+|.++.| .|++|+.|....++++||+++.++.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~s-----------aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTS-----------AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred hhheEEeccCCCeEEEEecccHH-----------HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 88999999999999999985432 1222233345678999999 7789999999999999999999987
Q ss_pred Eeee----ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcccccc-ceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373 287 KVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGGEDGAIHM 358 (536)
Q Consensus 287 ~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~tg~~dg~i~i 358 (536)
..-. |.+.|+++. +.+++.++++ ||.|++||--+++++.++..+|.+ .|.+..|..+|+++++.+.|..+++
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence 6554 888999998 7889999999 999999999999999999888876 7889999999999999999999999
Q ss_pred EEcccCccccccceeeeccCCC--C---CeEEEEEc--CCeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCC
Q 009373 359 YEIINDCTEANVLLVATWIPHT--G---PVNSLAFE--FPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP 430 (536)
Q Consensus 359 wd~~~~~~~~~~~~~~~~~~h~--~---~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 430 (536)
|.+.++ +++..+.|.. + --+...|+ .++++.-.. .+.+.-||.++..+....
T Consensus 332 WEi~t~------R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~-------------- 391 (430)
T KOG0640|consen 332 WEISTG------RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL-------------- 391 (430)
T ss_pred eeecCC------ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc--------------
Confidence 999999 6666665431 1 11233343 256655543 578999999986443222
Q ss_pred CeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCC
Q 009373 431 PQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 431 ~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~ 467 (536)
-.||.+.+..+.-++. -++|+|.|-.+|+|--.
T Consensus 392 ----slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 392 ----SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ----ccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 2467777777776655 89999999999999643
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=218.38 Aligned_cols=293 Identities=15% Similarity=0.173 Sum_probs=217.8
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-------ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIH 223 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~ 223 (536)
-..+.+|+..|.++++.|.|..|+|||.|.+|++||+... +.+.....|....+.+++.++.|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 3578899999999999999999999999999999998754 233344567778888889999999999999999
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce-EeEeeec------cc
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-CLKVLRH------SD 293 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~------~~ 293 (536)
++|-.... ..-...+...........||...++|.+| +.+.+++++.||++++||+...+ ..+.+.+ .-
T Consensus 240 l~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99854321 11112222223344556799999999999 44689999999999999987543 3344431 12
Q ss_pred cEEE--EeecCCEEEEec-CCcEEEEeCCCC--cEEEEEcccccc--ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcc
Q 009373 294 WVYG--LAPHDTTVASTS-GSDVYIWDTNSG--CLLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 366 (536)
Q Consensus 294 ~v~~--~~~~~~~l~~~~-d~~i~i~d~~~~--~~~~~~~~~~~~--~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~ 366 (536)
.++. +.++++.+++|. ||+|.+|+.... .+...+..+|.. .|+|+.|+++|++|++-+.|+++++||++..+
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k- 397 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK- 397 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-
Confidence 3333 348999999888 999999998553 344455567887 99999999999999999999999999999875
Q ss_pred ccccceeeeccC--CCCCeEEEEEcC--CeEEEEeC------CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373 367 EANVLLVATWIP--HTGPVNSLAFEF--PWLVSAAG------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH 436 (536)
Q Consensus 367 ~~~~~~~~~~~~--h~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (536)
+++....+ ...+-+.++|+| .+|++|.. .|.+.+||..+...... +.
T Consensus 398 ----kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k-------------------i~ 454 (641)
T KOG0772|consen 398 ----KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK-------------------ID 454 (641)
T ss_pred ----cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE-------------------ec
Confidence 34443333 334567889998 57777764 47899999887533321 12
Q ss_pred cccccEEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009373 437 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 437 ~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~ 468 (536)
-.+..|..+.|++. .|..|+.||+++||==++
T Consensus 455 i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 22466777777776 889999999999875443
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-27 Score=228.59 Aligned_cols=324 Identities=17% Similarity=0.201 Sum_probs=245.5
Q ss_pred CCCchhhhhhhh-hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE
Q 009373 128 DKSWKELFVERE-FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV 206 (536)
Q Consensus 128 ~~~Wk~~~~~~~-~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 206 (536)
.++|-....... ++.|.++-...+..|.+|.++|+.++|+|++.+++||+.|-.|+||+.++.+++.++.+|-..|..+
T Consensus 20 ~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence 445544332222 3444444445678899999999999999999999999999999999999999999999999988765
Q ss_pred e--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCC
Q 009373 207 A--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRAL 282 (536)
Q Consensus 207 ~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~ 282 (536)
. +.-..|+++|.|.+|+||++.+. .++..+.||...|.|-.|.+ +.++++|-|.+|++||+..
T Consensus 100 ~FHheyPWIlSASDDQTIrIWNwqsr-------------~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 100 FFHHEYPWILSASDDQTIRIWNWQSR-------------KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred eccCCCceEEEccCCCeEEEEeccCC-------------ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence 5 66779999999999999999764 58889999999999999954 7999999999999999742
Q ss_pred ce---------------------------E--eEeee-ccccEEEEee--cCCEEEEec-CCcEEEEeCCCCcEE--EEE
Q 009373 283 LK---------------------------C--LKVLR-HSDWVYGLAP--HDTTVASTS-GSDVYIWDTNSGCLL--TVV 327 (536)
Q Consensus 283 ~~---------------------------~--~~~~~-~~~~v~~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~--~~~ 327 (536)
.+ . ...+. |...|+-.+. .-.++++|+ |..|++|.+...+.- .+.
T Consensus 167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc 246 (1202)
T KOG0292|consen 167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC 246 (1202)
T ss_pred hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh
Confidence 11 0 01122 6666666664 447899998 789999998765432 223
Q ss_pred ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEE
Q 009373 328 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLID 406 (536)
Q Consensus 328 ~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd 406 (536)
.+|.+.|.++-|+|..+++++.|+|++|+|||+... ..+.++....+.-+.++.+| --|++++.|+-+.||.
T Consensus 247 -rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR------t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 247 -RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR------TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred -hcccCCcceEEecCccceeEecCCCccEEEEecccc------cceeeeeccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence 479999999999999999999999999999999888 77888888889999999998 3577777888888998
Q ss_pred CCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchh
Q 009373 407 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLEN 486 (536)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
++.. .+ +...+++.|.-.- |..|+.+|+.+.+...-. .++ ...
T Consensus 320 leRE-----------------------------rp--a~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~--~lr---~~g 362 (1202)
T KOG0292|consen 320 LERE-----------------------------RP--AYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA--SLR---RPG 362 (1202)
T ss_pred Eccc-----------------------------Cc--eEEEcCCEEEEEc-cceEEeeeccccccceeE--ecc---CCC
Confidence 8641 12 2233455444333 889999999984433211 111 111
Q ss_pred HHHhhhhccccccCCCCcceeE
Q 009373 487 RMRRRKLQTEMSSKGGRTDQCS 508 (536)
Q Consensus 487 ~~~~~~~~~~~~~~g~~~~~~~ 508 (536)
.......++..+|.-+.+..|+
T Consensus 363 ~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 363 TLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred cccCCcceeeeccccCeEEEEe
Confidence 1223345677788777777776
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=212.70 Aligned_cols=272 Identities=19% Similarity=0.329 Sum_probs=221.5
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee--------CCCCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--------KPLGCTIRAVA--ADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~~~--~~~~~l~sg~~dg~i~v 224 (536)
.|...-+-|..|+|||++|++||.||.|.+||..+|+..+.+ --+..+|.|++ .|...+++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 366777889999999999999999999999999999765543 33566777766 67889999999999999
Q ss_pred EEcccCccceecccCcccccceEEee-CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe-
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA- 299 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~- 299 (536)
|.+++|. +...+. .|+..|+|+.| |+..+++++.|.++++.-+.+|++++.++ |...|+...
T Consensus 290 Wri~tG~-------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 290 WRIETGQ-------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred EEEecch-------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 9998874 555555 79999999999 88899999999999999999999999998 999998765
Q ss_pred -ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373 300 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 375 (536)
Q Consensus 300 -~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 375 (536)
++|..+++++ ||+|++|+..+.+++.+++. +...+|+++..-|. ...++++...++|+|-++... .+++
T Consensus 357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-------vVrs 429 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-------VVRS 429 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-------EEee
Confidence 8999999988 99999999999999999874 34557888887774 468899999999999998764 3444
Q ss_pred ccC---CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--
Q 009373 376 WIP---HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-- 448 (536)
Q Consensus 376 ~~~---h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 448 (536)
+.. ..+...+...+| .++++.+.|+.++.+.+.++ ...+++.-|...+..+.-.
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG-------------------~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG-------------------KLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC-------------------ceeeeeecccccccccccCcc
Confidence 432 233444555565 79999999999999998874 3334455566666666644
Q ss_pred CCEEEEecCCCeEEEEe
Q 009373 449 ADRIVCGGEEGIVRIWN 465 (536)
Q Consensus 449 ~~~l~sg~~Dg~i~vW~ 465 (536)
.+.+|+-++||.+++|.
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 45999999999999995
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=198.03 Aligned_cols=252 Identities=17% Similarity=0.217 Sum_probs=207.5
Q ss_pred hhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--CCCEEE
Q 009373 137 EREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--DKKLLV 214 (536)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 214 (536)
++..+.|+-.....++++.||...|..++.+.|+..+++|+.|..|.+||+++|+.++.+.+|.+.|.++.+ +...++
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~ 117 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVA 117 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEE
Confidence 344455554455679999999999999999999999999999999999999999999999999999988874 566899
Q ss_pred EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecccc
Q 009373 215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW 294 (536)
Q Consensus 215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 294 (536)
+|+.|.++++||.++.. ..++..+....+.|.++...+..+++||.||+++.||++.|+....+ ...+
T Consensus 118 SgsfD~s~r~wDCRS~s-----------~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy-~g~p 185 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRS-----------FEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHP 185 (307)
T ss_pred eccccceeEEEEcccCC-----------CCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh-cCCc
Confidence 99999999999987743 45677777788999999999999999999999999999988765443 3445
Q ss_pred EEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEE--EEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373 295 VYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS--LARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369 (536)
Q Consensus 295 v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~--l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 369 (536)
|++++ ++++...+++ |+++++.|-.+|+.+..++ +|...-+. .+++.....+++|++||.|++||+.+.
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~----- 259 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE----- 259 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEeccCCceEEEEEeccc-----
Confidence 56555 8999888888 9999999999999999986 68765443 456677789999999999999999988
Q ss_pred cceeeeccCCCCC-eEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373 370 VLLVATWIPHTGP-VNSLAFEF--PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 370 ~~~~~~~~~h~~~-v~~l~~~~--~~l~s~s~dg~i~vwd~~ 408 (536)
..+..+..|... |.+++++| ..++++.. +.+..|--+
T Consensus 260 -~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 260 -TQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE 299 (307)
T ss_pred -eeeeeeccCCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence 667777777777 89999998 34444443 345666433
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6e-28 Score=202.06 Aligned_cols=233 Identities=17% Similarity=0.158 Sum_probs=196.8
Q ss_pred CccccEEEEEEecC-CCEEEEEeCCCcEEEEECCC-CceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccC
Q 009373 156 GHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 156 ~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~ 230 (536)
.-.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|...|.++. .+...+++++.||+|++|+...
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r- 136 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR- 136 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-
Confidence 35688999999986 46889999999999999643 367888899999999997 4567889999999999999754
Q ss_pred ccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ecCC
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHDT 303 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~~~ 303 (536)
...+.++.+|..-|....| .++.++++|.|+++++||++.......+. |...+.++. .+..
T Consensus 137 ------------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 137 ------------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred ------------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc
Confidence 3467789999999999999 67899999999999999998644333355 888999887 6778
Q ss_pred EEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373 304 TVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 380 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 380 (536)
.+++++ |+.|++||++.-+ ++..+ .+|.-.|+.++|+|.. ..|++++.|-+++|||...+. ..+.+..-|+
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-----s~~e~~~~Ht 278 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-----SAIETVDHHT 278 (311)
T ss_pred EEEecCCCceEEEEehhhccccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccch-----hhhhhhhccc
Confidence 888888 9999999999865 45555 5899999999999965 689999999999999987553 4566677899
Q ss_pred CCeEEEEEc---CCeEEEEeCCCcEEEEEC
Q 009373 381 GPVNSLAFE---FPWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 381 ~~v~~l~~~---~~~l~s~s~dg~i~vwd~ 407 (536)
.-|..+.|+ |.++++++.|+.++||+.
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEeccccccccCceeeecccccceeeecc
Confidence 999999996 589999999999999984
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=214.80 Aligned_cols=274 Identities=19% Similarity=0.290 Sum_probs=217.7
Q ss_pred eeeCccccEEEEEEecCCCE-EEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373 153 VLYGHTEAVLTVFVLASAKL-LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE 229 (536)
Q Consensus 153 ~l~~h~~~V~~v~~~~~~~~-l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~ 229 (536)
.+..-.+.|.+++|+|...+ +|+++ .-.|.||+..+....+++......+.+.+ .||.++++|+..|.|+++|..+
T Consensus 21 ~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 21 PVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 34444578999999997553 33333 36799999998888877766666665554 7899999999999999999644
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ecC
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHD 302 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~~ 302 (536)
...+..+.+|+.+|..+.| ++..+++|++|+.+++||+.+......+. |.+.|.|.+ .++
T Consensus 100 -------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~ 166 (487)
T KOG0310|consen 100 -------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAND 166 (487)
T ss_pred -------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCC
Confidence 2356678899999999998 66789999999999999999988644555 999999987 456
Q ss_pred CEEEEec-CCcEEEEeCCCC-cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373 303 TTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 380 (536)
Q Consensus 303 ~~l~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 380 (536)
.++++|+ ||.|++||+++. ..+..+. |..+|..+.+-|.|..+++++. ..|+|||+.++. +.+..+..|.
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~-----qll~~~~~H~ 238 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG-----QLLTSMFNHN 238 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc-----eehhhhhccc
Confidence 6888888 999999999987 6677774 9999999999999999999875 469999999774 4455556699
Q ss_pred CCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEec
Q 009373 381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGG 456 (536)
Q Consensus 381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~ 456 (536)
..|+|+++.. ..|++|+-|+.|++||+.+.+-... -...++|++++.++ +.++.|.
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s--------------------~~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS--------------------WKYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEEccceEEEEe--------------------eecccceeeEEecCCCceEEEec
Confidence 9999999964 8999999999999999766422211 23446777777655 5999999
Q ss_pred CCCeEEEEeCCc
Q 009373 457 EEGIVRIWNFSQ 468 (536)
Q Consensus 457 ~Dg~i~vW~~~~ 468 (536)
.||.+-+=+...
T Consensus 299 snGlv~~rr~~~ 310 (487)
T KOG0310|consen 299 SNGLVSIRRREV 310 (487)
T ss_pred ccceeeeehhhc
Confidence 999988774443
No 74
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.6e-26 Score=216.11 Aligned_cols=237 Identities=30% Similarity=0.432 Sum_probs=204.2
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 227 (536)
....+.+|...+..+.|+|+++++++++.||.|++|++.+++.+..+..|...+.++. +++.++++++.||.|.+||+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 5678889999999999999999999999999999999999888888888887777665 66688888888999999999
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD 302 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~ 302 (536)
.++. ....+..|...|.++.+ ++.++++++.|+.|++||+++++....+. +...+.++. +++
T Consensus 123 ~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 189 (289)
T cd00200 123 ETGK-------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG 189 (289)
T ss_pred CCcE-------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc
Confidence 7542 45556688999999999 34677777779999999999888887777 666888877 677
Q ss_pred CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
+.+++++ ++.+++||+++++.+..+. .|...+.++.|+|++.++++++.||.|++||+.+. .....+..|..
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~------~~~~~~~~~~~ 262 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG------ECVQTLSGHTN 262 (289)
T ss_pred CEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc------eeEEEccccCC
Confidence 6777777 8999999999988888774 58889999999999999999888999999999877 56677778999
Q ss_pred CeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373 382 PVNSLAFEF--PWLVSAAGDGKLSLID 406 (536)
Q Consensus 382 ~v~~l~~~~--~~l~s~s~dg~i~vwd 406 (536)
.|.+++|++ .+|++++.||.|++|+
T Consensus 263 ~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999987 7999999999999996
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=228.61 Aligned_cols=236 Identities=22% Similarity=0.356 Sum_probs=199.1
Q ss_pred ccccEE---EEEEe-cCCCEEEEEeCCCcEEEEECCCCc------eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009373 157 HTEAVL---TVFVL-ASAKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 157 h~~~V~---~v~~~-~~~~~l~sgs~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~v 224 (536)
|...|. .+..+ |.+++|+|||.||.|++|+..... .+..++.|...|..+. .+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444444 33343 457789999999999999985432 3667788988887765 77889999999999999
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce--EeEee----------
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK--CLKVL---------- 289 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~--~~~~~---------- 289 (536)
|+...+. ..+..++..|.+.|.|+++ +...+++|+-|+.|.+||++++. .+..+
T Consensus 100 W~~~~~~-----------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 100 WNAHKDN-----------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred eecccCc-----------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 9986542 2366678889999999999 66789999999999999999873 23222
Q ss_pred eccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcc
Q 009373 290 RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 366 (536)
Q Consensus 290 ~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~ 366 (536)
.+...|++++ +.+..+++|+ .+.+++||.++++.+..+. ||...|.++..++||..+++++.||+|++||+...
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-- 245 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-- 245 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc--
Confidence 1567888888 5666888888 8999999999999999997 89999999999999999999999999999999988
Q ss_pred ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373 367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
+++.++..|...|+++..++ .++++|+.||.|..=|+++.
T Consensus 246 ----rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 246 ----RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ----ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 89999999999999999988 68999999999999999875
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=215.76 Aligned_cols=240 Identities=21% Similarity=0.321 Sum_probs=204.1
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--e-cCCCEEEEEeCCCcEEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--A-ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~-~~~~~l~sg~~dg~i~vwd 226 (536)
..+++.-..+.|+++.|-.||++||+|+..|.|+|||+.+...++.+.+|..++... + .++..+++|+.|+.+++||
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 445566677899999999999999999999999999987777788888888877554 4 4567889999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCc-eEeEeeeccccEEEEe--e
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLA--P 300 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~--~ 300 (536)
+.+.. ....+.+|++.|.|.++ ++..++|||.||+|++||+++. ..+..+.|..+|-.+. |
T Consensus 140 ~s~a~-------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp 206 (487)
T KOG0310|consen 140 LSTAY-------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP 206 (487)
T ss_pred cCCcE-------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC
Confidence 97752 35578899999999999 5568999999999999999987 7778888999999887 8
Q ss_pred cCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373 301 HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 380 (536)
Q Consensus 301 ~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 380 (536)
.|..+++++++.|++||+.+|.........|...|+|+++..++..|++|+-||.|++||+.+. +.+..+ .-.
T Consensus 207 sgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~------Kvv~s~-~~~ 279 (487)
T KOG0310|consen 207 SGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY------KVVHSW-KYP 279 (487)
T ss_pred CCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce------EEEEee-ecc
Confidence 8999999999999999999776554444459999999999999999999999999999997776 455554 457
Q ss_pred CCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
++|.+++.+| ..++.|-.||.+.+=+...
T Consensus 280 ~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cceeeEEecCCCceEEEecccceeeeehhhc
Confidence 8999999987 7999999999887765443
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=198.75 Aligned_cols=236 Identities=17% Similarity=0.264 Sum_probs=203.0
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCC----CEEEEEeCCCcEEEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK----KLLVAGGTDGFIHCWR 226 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~l~sg~~dg~i~vwd 226 (536)
...+..|.++|++++.+ +.++|+||.|-+|+|||+.+...+..+-.|.+.|.++.+.+ ..|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 55788999999999995 99999999999999999999999999999999999988433 3799999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEeecC
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHD 302 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~ 302 (536)
... ......+.+|.+.|+.++. .++.-++.+.|+.+++||+-.|+.-...+ +........+.|
T Consensus 114 ~~~-------------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~G 180 (362)
T KOG0294|consen 114 VGS-------------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQG 180 (362)
T ss_pred cCC-------------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCC
Confidence 844 5578889999999999999 56788899999999999999988766655 555666666999
Q ss_pred CEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373 303 TTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 303 ~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
.+++.+....|-+|.+.+......+. ....+.++.|. ++..|++|++|+.|.+||..+. .+...+.+|...
T Consensus 181 d~F~v~~~~~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~------~~~~~~~AH~~R 251 (362)
T KOG0294|consen 181 DHFVVSGRNKIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD------TPLTEFLAHENR 251 (362)
T ss_pred CEEEEEeccEEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCC------ccceeeecchhh
Confidence 99999999999999999887766664 33567777775 4678999999999999999886 788889999999
Q ss_pred eEEEEE-c-C--CeEEEEeCCCcEEEEECCcc
Q 009373 383 VNSLAF-E-F--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 383 v~~l~~-~-~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
|-++.+ . | .+|+++|.||.|+|||++..
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999996 2 2 69999999999999999874
No 78
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.4e-26 Score=219.43 Aligned_cols=268 Identities=24% Similarity=0.395 Sum_probs=212.4
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--eeCCCCceEEE-Ee---cCCCEEEEEeCCCcEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA--SSKPLGCTIRA-VA---ADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~~v~~-~~---~~~~~l~sg~~dg~i~v 224 (536)
.+.+.||...|..++..+ +..++++|.||++++|+-..++.+. .+.+|.+.+.. ++ .++..+++|+.|+.|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 478999999999998764 5579999999999999987665544 34555554433 33 35567999999999999
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P 300 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~ 300 (536)
|...+. .+...+.+|.+.|.+++. ....+++||.|.++++|-.. ++...+. |...|.++. |
T Consensus 86 ~~~~~~-------------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 86 FKLSQA-------------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP 150 (745)
T ss_pred EecCCC-------------CchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC
Confidence 998654 477889999999999997 45559999999999999864 4444555 999999998 6
Q ss_pred cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373 301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379 (536)
Q Consensus 301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 379 (536)
.+ .+++|+ |.+|++|.- ++.++++. +|..-|+.+++-+++. |++++.||.|+.|++. + ..+..+.+|
T Consensus 151 e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~-g------e~l~~~~gh 218 (745)
T KOG0301|consen 151 EN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLD-G------EVLLEMHGH 218 (745)
T ss_pred CC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCCC-eEeecCCceEEEEecc-C------ceeeeeecc
Confidence 66 555555 999999986 67788886 6999999999998755 7899999999999994 4 478889999
Q ss_pred CCCeEEEEE--cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec-CCEEEEec
Q 009373 380 TGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-ADRIVCGG 456 (536)
Q Consensus 380 ~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg~ 456 (536)
++-|+++.. +...+++++.|+++++|+.....+ .+.--+..+++...- ..-+++|+
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q---------------------~I~lPttsiWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQ---------------------VITLPTTSIWSAKVLLNGDIVVGG 277 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEEEeecCceEE---------------------EEecCccceEEEEEeeCCCEEEec
Confidence 999999995 348999999999999999864321 122222356666643 33689999
Q ss_pred CCCeEEEEeCC
Q 009373 457 EEGIVRIWNFS 467 (536)
Q Consensus 457 ~Dg~i~vW~~~ 467 (536)
+||.||||...
T Consensus 278 SDG~VrVfT~~ 288 (745)
T KOG0301|consen 278 SDGRVRVFTVD 288 (745)
T ss_pred cCceEEEEEec
Confidence 99999999987
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.8e-26 Score=227.80 Aligned_cols=291 Identities=18% Similarity=0.246 Sum_probs=227.9
Q ss_pred ccccEEEEEEecCCCEEEEEe--CCCcEEEEECCC------------CceeeeeCCCCceEEEE--ecCCCEEEEEeCCC
Q 009373 157 HTEAVLTVFVLASAKLLFTSG--YDSIVRMWHLED------------GFSIASSKPLGCTIRAV--AADKKLLVAGGTDG 220 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg 220 (536)
+...|.+++.+|++..++||+ .||.++||+.+. .+.+.+...|.+++.|+ ++||.+||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 899999998742 13345567788877776 59999999999999
Q ss_pred cEEEEEccc-Cccceec----ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-cc
Q 009373 221 FIHCWRAVE-VLPHLFD----ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HS 292 (536)
Q Consensus 221 ~i~vwd~~~-~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~ 292 (536)
.|.||.... +....+. ....+..+....+.+|.+.|.+++| ++.+|++++.|++|.+||..+.+.+..+. |.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999874 1111221 1223456778889999999999999 68899999999999999999999999888 99
Q ss_pred ccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc-----ccccceEEEEEeCCCCEEEEEcC----CCcEEEEE
Q 009373 293 DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-----AHVGNTKSLARSHTGDFLFTGGE----DGAIHMYE 360 (536)
Q Consensus 293 ~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~----dg~i~iwd 360 (536)
+.|..+. |-|+++++-+ |.+|++|++.+......+.. +-...++.+.|+|||++|++... -.++.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 9999887 8899999988 89999999887666655542 12335788999999999998643 34577777
Q ss_pred cccCccccccceeeeccCCCCCeEEEEEcC-------C------------eEEEEeCCCcEEEEECCcccccCCCCCCCc
Q 009373 361 IINDCTEANVLLVATWIPHTGPVNSLAFEF-------P------------WLVSAAGDGKLSLIDVRKLLRSGRPTSGKR 421 (536)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------~------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 421 (536)
-.+. ..-..+.||.+++.+++|+| . .+++||.|++|.||........
T Consensus 252 R~tW------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-------- 317 (942)
T KOG0973|consen 252 RGTW------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL-------- 317 (942)
T ss_pred cCCc------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch--------
Confidence 6555 56677889999999999975 2 6789999999999998653222
Q ss_pred eeeEEeeCCCeeeeccccccEEEEEec--CCEEEEecCCCeEEEEeCCchhh
Q 009373 422 VSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE 471 (536)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~i~vW~~~~~~~ 471 (536)
....+-...+|.+++|+ |-.|..+|.||+|.+..|++.+.
T Consensus 318 ----------~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 318 ----------FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ----------hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 11222233456666665 55999999999999999997543
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8e-26 Score=195.22 Aligned_cols=255 Identities=19% Similarity=0.304 Sum_probs=204.3
Q ss_pred EEEEeCCCcEEEEECCCC------------ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCc
Q 009373 173 LFTSGYDSIVRMWHLEDG------------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS 240 (536)
Q Consensus 173 l~sgs~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 240 (536)
+++|++...|.=+++.-. .++..++.|.+++.+++-++.++++|+.|-+|+|||+...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~---------- 73 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR---------- 73 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch----------
Confidence 567777776666665321 2345568899999999999999999999999999999664
Q ss_pred ccccceEEeeCCccCEEEEEEeC----CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCc
Q 009373 241 EKQNTQFRLWEHEGPITSLALDL----TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSD 312 (536)
Q Consensus 241 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~ 312 (536)
.....+..|.+.|+++.|.+ +.|++|+.||.|.+|+.....++..+. |...|+.++ |.+++.++.+ |+.
T Consensus 74 ---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~ 150 (362)
T KOG0294|consen 74 ---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV 150 (362)
T ss_pred ---hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce
Confidence 35666778999999999943 379999999999999999999999998 888899888 8888877766 999
Q ss_pred EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-CC
Q 009373 313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FP 391 (536)
Q Consensus 313 i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~ 391 (536)
++.||+-.|+.-....-.+ ..+.+.|+|.|.+++.++.++ |-+|.+.+.. ....+. ....+.++.|. ..
T Consensus 151 lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~------v~~~i~-~~~r~l~~~~l~~~ 220 (362)
T KOG0294|consen 151 LRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNAS------VFREIE-NPKRILCATFLDGS 220 (362)
T ss_pred eeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEeccE-EEEEecccHh------Hhhhhh-ccccceeeeecCCc
Confidence 9999999998776665333 334599999999999888765 8999988762 222222 23567788884 68
Q ss_pred eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC----CEEEEecCCCeEEEEeCC
Q 009373 392 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA----DRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 392 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~sg~~Dg~i~vW~~~ 467 (536)
.|++|+.|+.|.+||-.+. .+...+.+|...|-++.+-. .+|+|+|.||.|+|||++
T Consensus 221 ~L~vG~d~~~i~~~D~ds~-------------------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSD-------------------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eEEEecCCceEEEeccCCC-------------------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 9999999999999998863 33445678888888887433 499999999999999999
Q ss_pred ch
Q 009373 468 QA 469 (536)
Q Consensus 468 ~~ 469 (536)
..
T Consensus 282 ~~ 283 (362)
T KOG0294|consen 282 ME 283 (362)
T ss_pred cc
Confidence 76
No 81
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=5.6e-26 Score=219.62 Aligned_cols=363 Identities=17% Similarity=0.234 Sum_probs=265.6
Q ss_pred hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCC-EEEEE
Q 009373 140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKK-LLVAG 216 (536)
Q Consensus 140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg 216 (536)
++.++.+.+..+.+++++...|+++.-+|--+.+|.|..+|+|.++|+..++.+.+++...+.|..++ .||. .+++|
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 45566666778999999999999999999989999999999999999999999999987778888887 4566 67778
Q ss_pred eCCCcEEEEEcccCccc-----------------------------------eecccCcccccceEEeeCCccCEEEEEE
Q 009373 217 GTDGFIHCWRAVEVLPH-----------------------------------LFDISGSEKQNTQFRLWEHEGPITSLAL 261 (536)
Q Consensus 217 ~~dg~i~vwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 261 (536)
+..|.+.+||++..... +++ .+.......+.-.||..+..++.|
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD-~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD-SGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee-CCCCcchheeeccCCCCCchheee
Confidence 88899999999865421 011 001111223344589999999999
Q ss_pred ---eCCEEEEEecCCeEEEEeCCCceEeE---------------eee----ccccEEEEeec-------CCEEEEec-CC
Q 009373 262 ---DLTRIYSGSWDMTVRVWDRALLKCLK---------------VLR----HSDWVYGLAPH-------DTTVASTS-GS 311 (536)
Q Consensus 262 ---~~~~l~s~s~dg~i~iwd~~~~~~~~---------------~~~----~~~~v~~~~~~-------~~~l~~~~-d~ 311 (536)
++..+.+++.|++.+.+++.....-+ ... .-.+|..++.. .+.+++.- +.
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 66789999999999999864321111 110 12345555521 23333333 67
Q ss_pred cEEEEeCCCCcE-EEEEccc----cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec---cCCCCCe
Q 009373 312 DVYIWDTNSGCL-LTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW---IPHTGPV 383 (536)
Q Consensus 312 ~i~i~d~~~~~~-~~~~~~~----~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~~~v 383 (536)
.++.|+.+.... ...+... ....+++++.++.|++.+.|+..|.|-+|++.++ .....+ ..|.++|
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG------i~r~sf~~~~ah~~~V 496 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG------IHRKSFGDSPAHKGEV 496 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC------eeecccccCccccCce
Confidence 899999988765 2333211 3368999999999999999999999999999998 455555 5899999
Q ss_pred EEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE--------------------e--eCCCeeeecccc
Q 009373 384 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI--------------------E--VEPPQRMLHGFE 439 (536)
Q Consensus 384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------------~--~~~~~~~~~~~~ 439 (536)
++++.++ ..+++++.+|.+++||..+.........+..+..+. . .....+.+.||+
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~ 576 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG 576 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc
Confidence 9999986 689999999999999998765333322222211110 0 122345678999
Q ss_pred ccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCcC
Q 009373 440 CNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMN 517 (536)
Q Consensus 440 ~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 517 (536)
..+++++|+++ +|++++.|++||+||+.++..+...... .....+.|+|+|..+|+..++..+
T Consensus 577 nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~~sls~SPngD~LAT~Hvd~~g---- 641 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPCTSLSFSPNGDFLATVHVDQNG---- 641 (910)
T ss_pred cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------CcceeeEECCCCCEEEEEEecCce----
Confidence 99988887766 9999999999999999999887654332 234689999999999998775433
Q ss_pred CCcceeeccc
Q 009373 518 GNRRSVWHNK 527 (536)
Q Consensus 518 ~~~~~~~~~~ 527 (536)
-++|.|+
T Consensus 642 ---IylWsNk 648 (910)
T KOG1539|consen 642 ---IYLWSNK 648 (910)
T ss_pred ---EEEEEch
Confidence 2556555
No 82
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.8e-25 Score=220.23 Aligned_cols=238 Identities=16% Similarity=0.229 Sum_probs=179.9
Q ss_pred eeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------ceeeeeCCCCceEEEEe--cCC-CEEEEEeCCC
Q 009373 152 DVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVA--ADK-KLLVAGGTDG 220 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg 220 (536)
..+.||.+.|++++|+| ++++|++|+.|++|++||+.++ ..+..+.+|...|.++. |++ ++|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 46889999999999999 7899999999999999999765 34667888988887665 654 6999999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE-
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY- 296 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~- 296 (536)
+|++||+.++. ....+.+|...|.+++| ++..|++++.|++|++||+++++.+..+. |.....
T Consensus 149 tVrIWDl~tg~-------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 149 VVNVWDVERGK-------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ 215 (493)
T ss_pred EEEEEECCCCe-------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce
Confidence 99999997653 45567789999999999 77899999999999999999999887776 554322
Q ss_pred EE--eecCCEEEEec-----CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCccc
Q 009373 297 GL--APHDTTVASTS-----GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTE 367 (536)
Q Consensus 297 ~~--~~~~~~l~~~~-----d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~ 367 (536)
.+ .+++..+++++ |+.|++||+++.. ++......+...+....|++++++|++|+ .||.|++||+.++.
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-- 293 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-- 293 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc--
Confidence 22 25555665532 5889999998764 33333222344566677899999999887 49999999999873
Q ss_pred cccceeeec-cCCCCCeEEEEEcCCeEEEEeCCCcEEEEECC
Q 009373 368 ANVLLVATW-IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 368 ~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 408 (536)
.+... ..+..++.+++|.|.+.+-...--..++|.+.
T Consensus 294 ----~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 294 ----LTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALT 331 (493)
T ss_pred ----eEEEeeccCCCCCcceEecccccccccceeeeEEEEec
Confidence 33322 23556788888887544443333344555543
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1e-25 Score=202.41 Aligned_cols=272 Identities=21% Similarity=0.256 Sum_probs=222.9
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 235 (536)
...|+++...|..+.++||+.|.++.++|..+++.+..+.+|...|..+. ++...+++++.|..|+||.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----- 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----- 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-----
Confidence 35788898888878999999999999999999999999999999998876 77889999999999999997543
Q ss_pred cccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeecc---ccEEEEe--ecCCEEEEe
Q 009373 236 DISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS---DWVYGLA--PHDTTVAST 308 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~--~~~~~l~~~ 308 (536)
........|..+|+.+.. .++||++++.||+..+.|++++.++....+. -.+++.. |+|.+|.+|
T Consensus 294 --------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 294 --------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred --------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc
Confidence 245556789999999988 8899999999999999999999998887754 2355554 999999999
Q ss_pred c-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEE
Q 009373 309 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSL 386 (536)
Q Consensus 309 ~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l 386 (536)
. |+.++|||+.++..+..|. +|.++|..++|+.+|-+|+++++|+.|++||+|... .+.++.- ...+|.++
T Consensus 366 t~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------n~kt~~l~~~~~v~s~ 438 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------NFKTIQLDEKKEVNSL 438 (506)
T ss_pred CCCceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc------ccceeeccccccceeE
Confidence 9 9999999999999999996 699999999999999999999999999999999873 3333322 23478999
Q ss_pred EEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEE
Q 009373 387 AFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVR 462 (536)
Q Consensus 387 ~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~ 462 (536)
.|+ +.+|+.++.|=.|++++-.+ +.+ .....++.|.+....+.|... +++++|.|..++
T Consensus 439 ~fD~SGt~L~~~g~~l~Vy~~~k~~--k~W---------------~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 439 SFDQSGTYLGIAGSDLQVYICKKKT--KSW---------------TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred EEcCCCCeEEeecceeEEEEEeccc--ccc---------------eeeehhhhcccccceeeecccceEEeeccchhheE
Confidence 996 48999998876666665433 121 112234556666667777665 999999999999
Q ss_pred EEeC
Q 009373 463 IWNF 466 (536)
Q Consensus 463 vW~~ 466 (536)
++.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8865
No 84
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-26 Score=196.00 Aligned_cols=289 Identities=20% Similarity=0.178 Sum_probs=220.2
Q ss_pred cCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeC
Q 009373 99 SDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGY 178 (536)
Q Consensus 99 ~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~ 178 (536)
..|+ |.+...+|+.....+.+.+.++....|.....+ .+.++.||++.|+|++.+-+.++++||+.
T Consensus 7 ~GHE--RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe------------rlGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 7 QGHE--RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE------------RLGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred ccCc--cccceEEecCCCcEEEEecCCCCceEEEecCCc------------eeeeecCCCceEEEEEecCCcceeeeccc
Confidence 4455 556666666555555555566666667554443 57899999999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEEEEeC-----CCcEEEEEcccCccceecccCcccccceEEeeCC
Q 009373 179 DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGT-----DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH 252 (536)
Q Consensus 179 dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h 252 (536)
|.++++||+++|+++..+... ......++++|++++.... .+.|.++|++..... .....+...+..+
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~------~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD------IDSEEPYLKIPTP 146 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh------hcccCceEEecCC
Confidence 999999999999999988543 3445667788988877654 477999998754211 1224457778888
Q ss_pred ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-e-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEE
Q 009373 253 EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT 325 (536)
Q Consensus 253 ~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~ 325 (536)
.+.++..-| -++.|++|..||.|.+||+++++....- + |...|+.+. ++..++++++ |.+-++||..+-+.+.
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 899999999 6789999999999999999998655443 3 888999887 8899999999 9999999999999999
Q ss_pred EEccccccceEEEEEeCCCCEEEEEcCCCcEEEE--EcccCccccc------cceeeeccCCCCCeEEEEEcC--CeEEE
Q 009373 326 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY--EIINDCTEAN------VLLVATWIPHTGPVNSLAFEF--PWLVS 395 (536)
Q Consensus 326 ~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw--d~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~--~~l~s 395 (536)
++. ...++++.+++|....++.|+.....-|= +.+.++-+.. .+.+...++|-++|++++|+| ...++
T Consensus 227 ty~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 227 TYT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS 304 (327)
T ss_pred Eee--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence 985 77899999999988777776543222111 1111111100 145667889999999999998 68899
Q ss_pred EeCCCcEEEEECCc
Q 009373 396 AAGDGKLSLIDVRK 409 (536)
Q Consensus 396 ~s~dg~i~vwd~~~ 409 (536)
|+.||.|++.-+..
T Consensus 305 GGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 305 GGEDGYVRLHHFDS 318 (327)
T ss_pred CCCCceEEEEEecc
Confidence 99999999986653
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-26 Score=216.84 Aligned_cols=234 Identities=22% Similarity=0.230 Sum_probs=207.8
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-CCceEEEEecCCCEEEEEeCCCcEEEEEcccCccce
Q 009373 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHL 234 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 234 (536)
-+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++.++..+.+|+.||.|..+|++....
T Consensus 215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~-- 292 (484)
T KOG0305|consen 215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH-- 292 (484)
T ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchh--
Confidence 3489999999999999999999999999999999999999988 9999999999999999999999999999977531
Q ss_pred ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ecCCEEEEe
Q 009373 235 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHDTTVAST 308 (536)
Q Consensus 235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~~~~l~~~ 308 (536)
....+.+|...|..+.| ++.++++|+.|+.+.|||.....+...+. |...|.+++ ....+||+|
T Consensus 293 ----------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 293 ----------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred ----------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc
Confidence 12247889999999999 88999999999999999997777777666 999999998 456778877
Q ss_pred c---CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE--EcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373 309 S---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 383 (536)
Q Consensus 309 ~---d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 383 (536)
+ |+.|++||..+++.+..+. ..+.|..+.|++..+-|++ |..++.|.||++.+. ..+..+.+|...|
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------~~~~~l~gH~~RV 434 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------KLVAELLGHTSRV 434 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc------ceeeeecCCccee
Confidence 6 7899999999999999884 6789999999999876665 445778999999887 7889999999999
Q ss_pred EEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 384 NSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
..++++| ..+++|+.|.++++|++-.
T Consensus 435 l~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999987 6999999999999999865
No 86
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=206.61 Aligned_cols=235 Identities=20% Similarity=0.284 Sum_probs=203.2
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 228 (536)
..+.-|.++|.|+.|+.|...||+|+.||.|++|.+.+|.+++.+. +|...|.|++ .|+..+++++.|.++++--+.
T Consensus 257 d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 257 DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence 3556789999999999999999999999999999999999999985 7777666655 788999999999999999987
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe---e
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA---P 300 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~---~ 300 (536)
+|+ ....+.||++.|+...| +|..+++++.||+|++|+..+.+|+.++. ...+|+++- .
T Consensus 337 SGK-------------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 337 SGK-------------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred cch-------------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 764 67778999999999999 88999999999999999999999999987 445677765 3
Q ss_pred cCCEEEEec-CCcEEEEeCCCCcEEEEEccc--cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373 301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA--HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 377 (536)
Q Consensus 301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 377 (536)
+...++.+. .+++.+.++. |+.++.+..| ..+...+.+.+|.|.++.+.++|+.++.|.+.++ ..-.++.
T Consensus 404 npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG------~LE~tl~ 476 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG------KLERTLP 476 (508)
T ss_pred CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC------ceeeeee
Confidence 455666666 8899999875 6777777644 2446677789999999999999999999999999 6777888
Q ss_pred CCCCCeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373 378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLID 406 (536)
Q Consensus 378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 406 (536)
-|...|..++-+| +.|++-+.||.+++|.
T Consensus 477 VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 477 VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccccCcccchhhhhcccchhhhcC
Confidence 8999999999988 7899999999999995
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4e-25 Score=181.99 Aligned_cols=241 Identities=21% Similarity=0.241 Sum_probs=194.4
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-----eeeeCCCCceEEEEe----c--CCCEEEEEe-CC
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IASSKPLGCTIRAVA----A--DKKLLVAGG-TD 219 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~----~--~~~~l~sg~-~d 219 (536)
+.-+.|.+.|+|.+|+|+|.+++||+.|.+|++--.....+ -..+.-|.+.|..++ | .+.+|++++ .|
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 34457999999999999999999999999999976654322 234567888888776 2 244566554 45
Q ss_pred CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEE-EeCCEEEEEecCCeEEEEeCCCceEeEeee---c----
Q 009373 220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA-LDLTRIYSGSWDMTVRVWDRALLKCLKVLR---H---- 291 (536)
Q Consensus 220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~---- 291 (536)
..|++-|..++ .....+.+|++.|.++- |++-.+++|+.|.+|++||++-..++.++. |
T Consensus 163 c~iy~tdc~~g-------------~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 163 CKIYITDCGRG-------------QGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred ceEEEeecCCC-------------CcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 66666666554 35677889999999884 599999999999999999999998888875 2
Q ss_pred -cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc
Q 009373 292 -SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE 367 (536)
Q Consensus 292 -~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~ 367 (536)
...|.+++ |.|+++++|. |....+||++.++.++.+. .|...|.++.|+|...++++|+.|..|++-|+...-
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl-- 306 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL-- 306 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccch--
Confidence 24566655 9999999999 8999999999999999996 599999999999999999999999999999987652
Q ss_pred cccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373 368 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 368 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 408 (536)
....++.....|...+..+.|+| -.+++.+.|.++.+|-+.
T Consensus 307 a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 11134455567999999999998 367888999999999764
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=192.60 Aligned_cols=271 Identities=13% Similarity=0.168 Sum_probs=218.7
Q ss_pred eeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEE
Q 009373 194 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYS 268 (536)
Q Consensus 194 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s 268 (536)
+.+++|...+.+++ .+|..|++|+.|+++.+|+++... ........+|.+.|-.++| +++.|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----------~~~~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----------FRKELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----------hhhhhcccCCCcchhhheeCCCCCcceEE
Confidence 34456666666555 789999999999999999987642 2233456789999999999 6689999
Q ss_pred EecCCeEEEEeCCCceEeEeeec-ccc-EEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC
Q 009373 269 GSWDMTVRVWDRALLKCLKVLRH-SDW-VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD 345 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~~-~~~-v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 345 (536)
++.|++|++||++++++...+.. ... ..+..|+|.++++++ |..|.+.|.++.+...... ....+.-++|+.++.
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSND 160 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCC
Confidence 99999999999999999998873 333 334559999999999 8999999999988877663 566788899998888
Q ss_pred EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCcee
Q 009373 346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 423 (536)
Q Consensus 346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 423 (536)
+++.....|+|.|.....- +++.++.+|.....||.|+| +++++|+.|-.+.+||+...
T Consensus 161 ~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------------- 221 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL------------- 221 (313)
T ss_pred EEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-------------
Confidence 8888888899999998766 88999999999999999987 79999999999999999874
Q ss_pred eEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCC
Q 009373 424 RVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKG 501 (536)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 501 (536)
.+.+.+..+.-+|..++| ++++||+||+|-.|-|=++++|..+.+.....+ ...++|+|+-
T Consensus 222 ------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~-----------t~tVAWHPk~ 284 (313)
T KOG1407|consen 222 ------ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP-----------TFTVAWHPKR 284 (313)
T ss_pred ------hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC-----------ceeEEecCCC
Confidence 333445555555655555 566999999999999999999988776544322 3689999999
Q ss_pred CCcceeEeeccc
Q 009373 502 GRTDQCSVAAKK 513 (536)
Q Consensus 502 ~~~~~~~~~~~~ 513 (536)
..||-+..+-.+
T Consensus 285 ~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 285 PLLAYACDDKDG 296 (313)
T ss_pred ceeeEEecCCCC
Confidence 999976554444
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=207.11 Aligned_cols=236 Identities=16% Similarity=0.234 Sum_probs=198.7
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--CCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--DKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 227 (536)
.+.+|.|-.++|+++.|.+++.++++++.|+.+++|++...+...++.+|...|++... ....+++|+.|.+|+.||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999872 3334999999999999999
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEE
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV 305 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l 305 (536)
.... +..++ -..+.+.+|...+..+++|-.|++|++||.++..+.......+.|+++. +++..+
T Consensus 291 ~k~~-------------C~kt~-l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~l 356 (459)
T KOG0288|consen 291 QKAY-------------CSKTV-LPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLEL 356 (459)
T ss_pred hhhh-------------eeccc-cccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEE
Confidence 6542 21111 2345566677778889999999999999999999999999777999987 888888
Q ss_pred EEec-CCcEEEEeCCCCcEEEEEccc---cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 306 ASTS-GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 306 ~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
.+++ |.++.++|+++.+....+... .....+.+.|+|++.|+++|+.||.|+||++.++ ++...+.....
T Consensus 357 LsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg------KlE~~l~~s~s 430 (459)
T KOG0288|consen 357 LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG------KLEKVLSLSTS 430 (459)
T ss_pred eeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc------eEEEEeccCCC
Confidence 8888 999999999999887776421 2234889999999999999999999999999998 44444443333
Q ss_pred --CeEEEEEcC--CeEEEEeCCCcEEEE
Q 009373 382 --PVNSLAFEF--PWLVSAAGDGKLSLI 405 (536)
Q Consensus 382 --~v~~l~~~~--~~l~s~s~dg~i~vw 405 (536)
.|++++|+| ..|++++.++.+.+|
T Consensus 431 ~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 431 NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CcceEEEEEcCCCchhhcccCCcceEec
Confidence 699999986 799999999999999
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-25 Score=211.74 Aligned_cols=264 Identities=24% Similarity=0.321 Sum_probs=214.5
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcc
Q 009373 164 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE 241 (536)
Q Consensus 164 v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 241 (536)
+.|+ ..+.|+.|. ...|++|+..++........+...++++. ++|.+|++|..+|.|.|||..+.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~----------- 249 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ----------- 249 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc-----------
Confidence 4566 455666665 46899999999986555544456666554 88999999999999999998664
Q ss_pred cccceEEeeC-CccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEe-ee-ccccEEEEe--ecCCEEEEec-CCcEEE
Q 009373 242 KQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVASTS-GSDVYI 315 (536)
Q Consensus 242 ~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i 315 (536)
.....+.+ |...|-+++|++..+.+|+.|+.|..+|++..+.... +. |...|..+. +++.++++|+ |+.+.|
T Consensus 250 --k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I 327 (484)
T KOG0305|consen 250 --KKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI 327 (484)
T ss_pred --cccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence 35556666 9999999999999999999999999999998776555 44 889999887 8999999999 999999
Q ss_pred EeCCCCcEEEEEccccccceEEEEEeCC-CCEEEEEc--CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCe
Q 009373 316 WDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW 392 (536)
Q Consensus 316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (536)
||....+++..+. .|...|.+++|+|- ..+||+|+ .|+.|++||..++ ..+... .-.+.|.+|.|++.+
T Consensus 328 wd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g------~~i~~v-dtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 328 WDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG------ARIDSV-DTGSQVCSLIWSKKY 399 (484)
T ss_pred ccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC------cEeccc-ccCCceeeEEEcCCC
Confidence 9998888888885 69999999999994 56788864 5999999999988 444433 346789999999743
Q ss_pred --EEEE--eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeC
Q 009373 393 --LVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF 466 (536)
Q Consensus 393 --l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~ 466 (536)
|+++ ..++.|.||+..+. .....+.+|...|+.++.+++ .+++|+.|.++++|++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~-------------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSM-------------------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CEEEEecCCCCCcEEEEecccc-------------------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 5544 34778999999873 334567899999988886665 9999999999999999
Q ss_pred Cch
Q 009373 467 SQA 469 (536)
Q Consensus 467 ~~~ 469 (536)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 875
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=6.2e-26 Score=205.50 Aligned_cols=268 Identities=16% Similarity=0.161 Sum_probs=205.2
Q ss_pred ccceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCCce----------eeeeCCCCceEEEEe---cCCCEE
Q 009373 148 RYSIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFS----------IASSKPLGCTIRAVA---ADKKLL 213 (536)
Q Consensus 148 ~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~~~----------~~~~~~~~~~v~~~~---~~~~~l 213 (536)
+..+....-|.+.|..+.+.|.. .++||++..+.|.|||..+-.. -..+.+|...-..++ .....|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 44555666799999999999975 5777888999999999864321 124566665444444 345689
Q ss_pred EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee
Q 009373 214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR 290 (536)
Q Consensus 214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 290 (536)
++|+.|++|.+||+...... .....+...+.+|++.|..++| +.+.|.+++.|+.+.|||++++ .
T Consensus 194 ls~~~d~~i~lwdi~~~~~~------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~----- 261 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKE------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T----- 261 (422)
T ss_pred eeccCCCcEEEEeccccccC------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C-----
Confidence 99999999999999764311 1224567778899999999999 6688999999999999998863 1
Q ss_pred ccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccc
Q 009373 291 HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEAN 369 (536)
Q Consensus 291 ~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~ 369 (536)
.++.... .+|.+.++|++|+|- +..||||+.|++|.+||+|+..
T Consensus 262 ------------------------------~~~~~~~-~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~---- 306 (422)
T KOG0264|consen 262 ------------------------------SKPSHSV-KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN---- 306 (422)
T ss_pred ------------------------------CCCcccc-cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----
Confidence 0111112 369999999999995 4678999999999999999985
Q ss_pred cceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE
Q 009373 370 VLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD 446 (536)
Q Consensus 370 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 446 (536)
.++.++.+|...|..|.|+| ..|++++.|+.+.|||+............. ....+...+-.||...|..++
T Consensus 307 -~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~-----dgppEllF~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 307 -KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE-----DGPPELLFIHGGHTAKVSDFS 380 (422)
T ss_pred -cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc-----cCCcceeEEecCccccccccc
Confidence 57899999999999999998 689999999999999998643332211111 011233344568999999999
Q ss_pred ecCC---EEEEecCCCeEEEEeCCc
Q 009373 447 IGAD---RIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 447 ~~~~---~l~sg~~Dg~i~vW~~~~ 468 (536)
+++. .++|.++|+.+.||++..
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeeccc
Confidence 9887 899999999999999874
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.3e-25 Score=200.78 Aligned_cols=246 Identities=23% Similarity=0.325 Sum_probs=194.6
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee------------------CCCCceEEE--EecCC
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS------------------KPLGCTIRA--VAADK 210 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~------------------~~~~~~v~~--~~~~~ 210 (536)
.+.+..|.-+|.||+++|++.+.++++.||+|.=|++.+|+....+ ..|...+++ +++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4677889999999999999999999999999999999888643110 145555554 45999
Q ss_pred CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV 288 (536)
Q Consensus 211 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~ 288 (536)
++|++|+.|..|.||+.++.. .+..+.+|.+.|.+++| ....+++++.|++|++|+++....+.+
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-------------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred cEEEecCCCceEEEecCcccc-------------hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence 999999999999999998753 56668999999999999 557899999999999999998877776
Q ss_pred ee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 289 LR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 289 ~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
+- |++.|.++. ..++.+.+|+ |.++++|++.....+. ..++.+.+-|++|-.+ ..+++|+.+|.|.+|++...
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli--frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI--FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEeccccceee--eeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence 55 999999998 5566666665 9999999995443332 2468899999999855 56899999999999999877
Q ss_pred ccccccce---eeec---cCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccc
Q 009373 365 CTEANVLL---VATW---IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLR 412 (536)
Q Consensus 365 ~~~~~~~~---~~~~---~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~ 412 (536)
++...... +... ..+...|++|+.-| +++++|+.+|.|++|-+..+.+
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 32211100 0000 11223788999876 8999999999999999987643
No 93
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=5.9e-24 Score=209.61 Aligned_cols=242 Identities=19% Similarity=0.236 Sum_probs=182.5
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-------------eeeCCCCceEEEEe--c-CCCEEEEEeCCC
Q 009373 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-------------ASSKPLGCTIRAVA--A-DKKLLVAGGTDG 220 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~--~-~~~~l~sg~~dg 220 (536)
|-..|.....++++..+++++.+..+..|+...+..+ ..+.+|...|.++. | ++++|++|+.||
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445556666667677777777777777876544322 13567888888776 5 678999999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY 296 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~ 296 (536)
+|++||+.++... .........+.+|...|.+++|+ ++.|++|+.|++|++||+.+++....+. |...|.
T Consensus 99 tIkIWdi~~~~~~------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 99 TIMGWGIPEEGLT------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEEEecCCCccc------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 9999999764210 01123566788999999999994 3689999999999999999999888887 888999
Q ss_pred EEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccc-eEEEEEeCCCCEEEEEc----CCCcEEEEEcccCcccc
Q 009373 297 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN-TKSLARSHTGDFLFTGG----EDGAIHMYEIINDCTEA 368 (536)
Q Consensus 297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~tg~----~dg~i~iwd~~~~~~~~ 368 (536)
+++ +++.+|++++ |+.|++||+++++.+..+. +|.+. +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--- 248 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--- 248 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---
Confidence 887 7899999988 9999999999999888875 57654 45678899888777654 47899999998763
Q ss_pred ccceeeeccCC-CCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcc
Q 009373 369 NVLLVATWIPH-TGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL 410 (536)
Q Consensus 369 ~~~~~~~~~~h-~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~ 410 (536)
.++.....+ ...+....|++ ++|++++ .|+.|++||+.+.
T Consensus 249 --~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 249 --SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred --CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 233333323 34455556664 6788777 5999999999875
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.2e-24 Score=185.48 Aligned_cols=309 Identities=17% Similarity=0.167 Sum_probs=205.7
Q ss_pred hccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-----ee-eeCCCCceEEEEecCCCE-E
Q 009373 141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IA-SSKPLGCTIRAVAADKKL-L 213 (536)
Q Consensus 141 ~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-----~~-~~~~~~~~v~~~~~~~~~-l 213 (536)
+..++..+..+.+|+||.+.|++++|+.||++|+|++.|++|++|++.+-.. ++ .+.....+...|+||-.- +
T Consensus 69 ~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 69 KQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVV 148 (420)
T ss_pred cCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEE
Confidence 3455666777899999999999999999999999999999999999976421 11 122223455677787664 4
Q ss_pred EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-
Q 009373 214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR- 290 (536)
Q Consensus 214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~- 290 (536)
++.-...++++|.+.....-.+.... -......-...|.-.|.++-. ++.+|++++.|..|.+|+++ |+.+..+.
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~-v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHF-VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCccc-ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 44555667999987543210000000 000111112346667777666 56799999999999999998 88888776
Q ss_pred --ccccEEEEeecCCEEEEec-CCcEEEEeCCC---C-----cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373 291 --HSDWVYGLAPHDTTVASTS-GSDVYIWDTNS---G-----CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 359 (536)
Q Consensus 291 --~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~---~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw 359 (536)
....-.+++|+|+++++++ .-.|++|.+-- | ..+..+. ||...|..++|+|+...+++.+.||+++||
T Consensus 227 nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 3444556779999999988 88999998632 2 1233343 799999999999999999999999999999
Q ss_pred EcccCccc-cccceeeec----cCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee
Q 009373 360 EIINDCTE-ANVLLVATW----IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 433 (536)
Q Consensus 360 d~~~~~~~-~~~~~~~~~----~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (536)
|..-.-.. +....+.+. ....+....|+.+| .-+++.+....++++..+++... +...
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~----------------~~~e 369 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDY----------------PELE 369 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccc----------------hhHH
Confidence 97533111 111222221 12233334778887 34555556668999998875322 1122
Q ss_pred eeccccccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373 434 MLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 434 ~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~ 469 (536)
..++......+++++|.+++|+| |..+++..-..|
T Consensus 370 ~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred HhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 23333344444555566999988 678998874443
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.1e-25 Score=184.15 Aligned_cols=250 Identities=18% Similarity=0.193 Sum_probs=192.6
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeeeCCCCceEEEEe---c-CCCEEEEEeCCCcEEE
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVA---A-DKKLLVAGGTDGFIHC 224 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~---~-~~~~l~sg~~dg~i~v 224 (536)
..-.+|.+.|..+...-.|..|||++.|++|+||.+.+. +.+.++.+|.+++..+. | -|.+|++++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 345689999999888888999999999999999999765 46788999999998876 2 5889999999999999
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEee
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAP 300 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 300 (536)
|.-+.+. .........|.+.|++++|. +-.|++++.||.|.|.+.++..
T Consensus 85 Wke~~g~-----------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---------------- 137 (299)
T KOG1332|consen 85 WKEENGR-----------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---------------- 137 (299)
T ss_pred EecCCCc-----------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC----------------
Confidence 9976653 45566677899999999993 3468899999999998875431
Q ss_pred cCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCC---C-----------CEEEEEcCCCcEEEEEcccCcc
Q 009373 301 HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---G-----------DFLFTGGEDGAIHMYEIINDCT 366 (536)
Q Consensus 301 ~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~---~-----------~~l~tg~~dg~i~iwd~~~~~~ 366 (536)
+-....+...|.-.|++++|.|. | +.|++|+.|..|+||+..++
T Consensus 138 --------------------~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-- 195 (299)
T KOG1332|consen 138 --------------------GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-- 195 (299)
T ss_pred --------------------CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--
Confidence 00111122357777777777774 3 56999999999999999886
Q ss_pred ccccceeeeccCCCCCeEEEEEcC------CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373 367 EANVLLVATWIPHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC 440 (536)
Q Consensus 367 ~~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (536)
....-.++.+|.+-|+.++|.| .+|+++|.||++.||..+.....++. ..++....
T Consensus 196 --~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~----------------tll~~f~~ 257 (299)
T KOG1332|consen 196 --SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK----------------TLLEEFPD 257 (299)
T ss_pred --chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc----------------cccccCCc
Confidence 2244556899999999999987 58999999999999987742222211 12233334
Q ss_pred cEE--EEEecCCEEEEecCCCeEEEEeCCc
Q 009373 441 NLL--SVDIGADRIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 441 ~v~--~~~~~~~~l~sg~~Dg~i~vW~~~~ 468 (536)
.++ +++++|+.|+.++.|+.|.+|.-..
T Consensus 258 ~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 444 5556788999999999999998654
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.5e-25 Score=209.54 Aligned_cols=316 Identities=20% Similarity=0.281 Sum_probs=238.2
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw 225 (536)
+..++.|++.|..+....+++.|+++|.|-+|++|+...+ -+..++..|...|.|++ .+..++++|+.|+.|.+|
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW 145 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence 6788999999999999999999999999999999999877 67888999999999887 467799999999999999
Q ss_pred EcccCccceecccCcccccceEEee-CCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-- 299 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~-- 299 (536)
|+.++.... ...........+. |+..+|.+++.++ ..+++|+..+-+++||.++.+.+..+. |.+.|.++.
T Consensus 146 Din~~~~~l---~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 146 DINTGTATL---VASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN 222 (735)
T ss_pred EccCcchhh---hhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEc
Confidence 999874311 1111112222333 8999999999954 489999999999999999999888887 999999886
Q ss_pred ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373 300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 378 (536)
Q Consensus 300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 378 (536)
.+|+.+++++ ||+|++||+...+++.++. .|...+.++..+|+-..+.+|+.||.|..=|+++.. ....+-.
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~------~~tlick 295 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA------KSTLICK 295 (735)
T ss_pred CCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCCcceEEecCCCCcEEecccCCch------hheEeec
Confidence 8898888888 9999999999999999986 699999999999999999999999999999999862 1112223
Q ss_pred CCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCC------CCCCceeeEEeeCCCeeeecc-ccccEEEEEecC
Q 009373 379 HTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRP------TSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGA 449 (536)
Q Consensus 379 h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 449 (536)
...+|..+..+ .+-+-+++.|+.|+-|..+-....... ..............+..+.+| +...-.++--+.
T Consensus 296 ~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dk 375 (735)
T KOG0308|consen 296 EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDK 375 (735)
T ss_pred CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCc
Confidence 45566666665 344578889999999987643221111 000011111111122222333 222222333344
Q ss_pred CEEEEecCCCeEEEEeCCchhhHHHHH
Q 009373 450 DRIVCGGEEGIVRIWNFSQAFEIERRA 476 (536)
Q Consensus 450 ~~l~sg~~Dg~i~vW~~~~~~~~~~~~ 476 (536)
++++|-...|.+.+||+-....++.+.
T Consensus 376 RhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 376 RHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred ceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 599999999999999999888777654
No 97
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.4e-23 Score=205.01 Aligned_cols=225 Identities=16% Similarity=0.168 Sum_probs=172.0
Q ss_pred EEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373 175 TSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 251 (536)
Q Consensus 175 sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (536)
.|+.++.|++|+......+..+.+|...|.++. |+ +.+|++|+.||+|++||+.++..... ....+...+.+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----~i~~p~~~L~g 123 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----EIKDPQCILKG 123 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----ccccceEEeec
Confidence 367789999999988888889999999998776 54 68999999999999999976421100 00123456789
Q ss_pred CccCEEEEEEe--CC-EEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEE
Q 009373 252 HEGPITSLALD--LT-RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT 325 (536)
Q Consensus 252 h~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~ 325 (536)
|...|.+++|+ +. .+++++.|++|++||+++++....+.+...|.+++ ++|.+|++++ |+.|++||+++++.+.
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 99999999994 33 46799999999999999998887777778888887 7899999887 8999999999999988
Q ss_pred EEccccccceEEE-----EEeCCCCEEEEEcCCC----cEEEEEcccCccccccceeee--ccCCCCCeEEEEEc--CCe
Q 009373 326 VVNGAHVGNTKSL-----ARSHTGDFLFTGGEDG----AIHMYEIINDCTEANVLLVAT--WIPHTGPVNSLAFE--FPW 392 (536)
Q Consensus 326 ~~~~~~~~~i~~l-----~~~~~~~~l~tg~~dg----~i~iwd~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~--~~~ 392 (536)
.+. +|.+.+.+. .|++++.+|++++.|+ .|+|||++... .++.. +..+.+.+...... +.+
T Consensus 204 tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----~pl~~~~ld~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 204 SFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----SALVTMSIDNASAPLIPHYDESTGLI 277 (568)
T ss_pred EEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----CceEEEEecCCccceEEeeeCCCCCE
Confidence 875 687754432 3458889999887774 79999998642 23333 22333333333222 358
Q ss_pred EEEEeCCCcEEEEECCcc
Q 009373 393 LVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 393 l~s~s~dg~i~vwd~~~~ 410 (536)
+++|+.|+.|++|++...
T Consensus 278 ~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEEECCCeEEEEEccCC
Confidence 889999999999999753
No 98
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.4e-23 Score=207.74 Aligned_cols=225 Identities=16% Similarity=0.217 Sum_probs=168.6
Q ss_pred cceeeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCCc--------eeeeeCCCCceEEEEe--cCCCE-EEEE
Q 009373 149 YSIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGF--------SIASSKPLGCTIRAVA--ADKKL-LVAG 216 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~~~--~~~~~-l~sg 216 (536)
..+..+.+|.+.|.+++|+|+ +.+|+||+.||+|+|||+.++. .+..+.+|...|.++. |++.. |++|
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 357789999999999999997 7899999999999999997642 3345678888776655 76664 5799
Q ss_pred eCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccc
Q 009373 217 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSD 293 (536)
Q Consensus 217 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~ 293 (536)
+.|++|++||+.++. ....+. |...|.+++| ++..|++++.|+.|++||+++++.+..+. |.+
T Consensus 145 S~DgtIrIWDl~tg~-------------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 145 GFDSFVNIWDIENEK-------------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred eCCCeEEEEECCCCc-------------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence 999999999997753 223333 5678999999 78899999999999999999999888876 665
Q ss_pred cEEE-------EeecCCEEEEec-CC----cEEEEeCCC-CcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373 294 WVYG-------LAPHDTTVASTS-GS----DVYIWDTNS-GCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMY 359 (536)
Q Consensus 294 ~v~~-------~~~~~~~l~~~~-d~----~i~i~d~~~-~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw 359 (536)
.+.+ +.+++.++++++ ++ +|++||++. ++++..+.. .+.+.+......++|.++++|+.|+.|++|
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYY 290 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEE
Confidence 4332 125777777766 53 699999995 556655431 122333333345568899999999999999
Q ss_pred EcccCccccccceeeeccCCCCCeEEEEEcCCe
Q 009373 360 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPW 392 (536)
Q Consensus 360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (536)
++..+. ...+..+. +..++.+++|.|+.
T Consensus 291 e~~~~~----~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 291 QHSLGS----IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EccCCc----EEeecccc-cCCCccceEEcccc
Confidence 997662 12333333 67788999998843
No 99
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-23 Score=180.26 Aligned_cols=277 Identities=15% Similarity=0.205 Sum_probs=196.2
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeeeeCCCCceEEEEe---c-CCCEEEEEeCCCcEEEEE
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA---A-DKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~---~-~~~~l~sg~~dg~i~vwd 226 (536)
.+|.+-|.++.|.+.|+.+|||+.|++|+|||..+. .+....+.|.+.|..+. | -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 589999999999999999999999999999997543 45566788999998886 3 388999999999999997
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecC
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHD 302 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 302 (536)
-.... ....+.......++....+.|+++.| -|-.+++++.||++|||+....-.+....
T Consensus 90 E~~~~----~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~------------ 153 (361)
T KOG2445|consen 90 EQEKS----EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT------------ 153 (361)
T ss_pred ecccc----cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch------------
Confidence 53111 00111234556677788899999999 34578999999999999976543333222
Q ss_pred CEEEEecCCcEEEEeCCCCcE-EEEEccccccceEEEEEeCC---CCEEEEEcCC-----CcEEEEEcccCcccccccee
Q 009373 303 TTVASTSGSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHT---GDFLFTGGED-----GAIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 303 ~~l~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~---~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~ 373 (536)
+...-. +..-...+..+..|+.|+|. ..+|++|+.+ +.++||...... .+...+
T Consensus 154 ---------------Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kv 216 (361)
T KOG2445|consen 154 ---------------LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKV 216 (361)
T ss_pred ---------------hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeee
Confidence 211100 00011235566778889874 3678888876 579999887663 244567
Q ss_pred eeccCCCCCeEEEEEcC------CeEEEEeCCCcEEEEECCcccccCCC---CCCCceeeEEeeCCCeeeeccccccEEE
Q 009373 374 ATWIPHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRP---TSGKRVSRVIEVEPPQRMLHGFECNLLS 444 (536)
Q Consensus 374 ~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 444 (536)
.++.+|..+|+.|+|.| ..|++++.|| |+||+++........ ........+ .-.....+.+|.+.|+.
T Consensus 217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l--~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL--PVEKVSELDDHNGEVWR 293 (361)
T ss_pred hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc--ceEEeeeccCCCCceEE
Confidence 78889999999999987 4799999999 999999853211100 000000000 01122346788888887
Q ss_pred EEe--cCCEEEEecCCCeEEEEeCC
Q 009373 445 VDI--GADRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 445 ~~~--~~~~l~sg~~Dg~i~vW~~~ 467 (536)
+.+ .|..|++.|.||+||+|...
T Consensus 294 v~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 294 VRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEeeeeeEEeecCCCceeeehhhh
Confidence 776 46799999999999999865
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=209.10 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=208.8
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCc----eeeeeCCCCceEE---EE---ecCCCEEEEEeCCCcEEEEEcccC
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGF----SIASSKPLGCTIR---AV---AADKKLLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~~~v~---~~---~~~~~~l~sg~~dg~i~vwd~~~~ 230 (536)
..+|+..++-..++.++. ..++|+.+.... +...+.......+ .+ ..+.++|+|++..|.|.+||+...
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 445566788777777775 467888775432 2222222111111 11 256789999999999999998542
Q ss_pred ccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ecCC
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHDT 303 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~~~ 303 (536)
...+....+..|+..+.++.| .+.+|++||.||+|++||++..+...++. ....|..+. ..+.
T Consensus 121 ----------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 121 ----------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ----------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc
Confidence 113355567889999999999 67899999999999999999888877776 666777776 3467
Q ss_pred EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373 304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
.++++. +|.+++||++..........+|.++|.|+.|+|++.+|||||.|+.|+|||+.+... .+..++ ....+
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~tI-nTiap 265 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKHTI-NTIAP 265 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc----cceeEE-eecce
Confidence 778877 699999999987544443458999999999999999999999999999999987632 222222 23568
Q ss_pred eEEEEEcC---CeEEEEeC--CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC---CEEEE
Q 009373 383 VNSLAFEF---PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---DRIVC 454 (536)
Q Consensus 383 v~~l~~~~---~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s 454 (536)
|..+.|-| .+|++++. |-.|+|||++.+ .-+..++..|...+..+.+.+ ..+.+
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------YIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeeccc------------------cccceeeeccCccccceeccCCCceeeEe
Confidence 99999987 57888775 788999999875 455667888999999998866 28999
Q ss_pred ecCCCeEEEEeCCchhhH
Q 009373 455 GGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 455 g~~Dg~i~vW~~~~~~~~ 472 (536)
++.||+|..=.++++...
T Consensus 328 ~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNATTP 345 (839)
T ss_pred ecCccHHHHhhhhcccCh
Confidence 999999887666665443
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.9e-24 Score=193.86 Aligned_cols=238 Identities=22% Similarity=0.255 Sum_probs=194.7
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP 232 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~ 232 (536)
++|...|.+++.++||++||+|+.|..|.||+.++.+.++.+.+|...|.++. .....+++++.|++|++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~--- 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ--- 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH---
Confidence 49999999999999999999999999999999999999999999999998887 4566899999999999999855
Q ss_pred ceecccCcccccceEEeeCCccCEEEEEE-eCCEEEE-EecCCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEec
Q 009373 233 HLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYS-GSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTS 309 (536)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~ 309 (536)
...+.++.+|.+.|.+|.. .-..++| |+.|+++++|++.....+....+.+.+-|++ -+...+++|+
T Consensus 276 ----------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGS 345 (479)
T KOG0299|consen 276 ----------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGS 345 (479)
T ss_pred ----------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeecc
Confidence 3466678899999999988 5555555 5599999999996555554455888888888 7778888888
Q ss_pred -CCcEEEEeCCCCcEEEEEccccc-----------cceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373 310 -GSDVYIWDTNSGCLLTVVNGAHV-----------GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 377 (536)
Q Consensus 310 -d~~i~i~d~~~~~~~~~~~~~~~-----------~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 377 (536)
+|.|.+|++.+.+++.+...+|. ..|++++..|..+++++|+.+|.|++|-+..+.. .+.++..+.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r--~i~~l~~ls 423 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR--AINLLYSLS 423 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--ccceeeecc
Confidence 79999999999999888765442 2789999999999999999999999999988843 234455544
Q ss_pred CCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECC
Q 009373 378 PHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVR 408 (536)
Q Consensus 378 ~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~ 408 (536)
-.+-|++|+|++ .++++| +....+--|-..
T Consensus 424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred -cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 678999999964 545544 445555555443
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=6.7e-24 Score=190.80 Aligned_cols=241 Identities=19% Similarity=0.230 Sum_probs=204.9
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~ 227 (536)
.+.+|+||+..|+.+.|+|+...+++++.|..|+||.............|..+|..++ |.|.+|++++.||+..+.|+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 4689999999999999999999999999999999999998888888899999998876 99999999999999999999
Q ss_pred ccCccceecccCcccccceEEee--CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P 300 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~ 300 (536)
+++. ...... ...-.+++.+| ||..|.+|+.||.|+|||+.++.....|. |.++|.+++ .
T Consensus 333 ~~g~-------------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE 399 (506)
T KOG0289|consen 333 SSGS-------------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE 399 (506)
T ss_pred cCCc-------------EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc
Confidence 8874 111111 12235888899 77889999999999999999999888887 999999988 6
Q ss_pred cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373 301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379 (536)
Q Consensus 301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 379 (536)
+|-+++++. |+.|++||++.-+...++......++.++.|.+.|.+|+.++.|=.|++++-.+ .++..+..+..|
T Consensus 400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~----k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 400 NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT----KSWTEIKELADH 475 (506)
T ss_pred CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc----ccceeeehhhhc
Confidence 788898888 678999999999988888655566899999999999999998886666665333 244677888889
Q ss_pred CCCeEEEEEcC--CeEEEEeCCCcEEEEEC
Q 009373 380 TGPVNSLAFEF--PWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 380 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 407 (536)
.+..+++.|.. .+++++|.|..++++.+
T Consensus 476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccceeeecccceEEeeccchhheEEeec
Confidence 99999999964 79999999999888754
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.1e-25 Score=193.61 Aligned_cols=274 Identities=18% Similarity=0.259 Sum_probs=214.4
Q ss_pred eeCCCCceEEEEe--cCC-CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEec
Q 009373 195 SSKPLGCTIRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 271 (536)
Q Consensus 195 ~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 271 (536)
.+.+|...|.+++ |.. ..+++|+.||.|++||+.+ ..+...+..|.+.|..|+++.+.+++++.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------------R~~~~~f~AH~G~V~Gi~v~~~~~~tvgd 127 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------------RECIRTFKAHEGLVRGICVTQTSFFTVGD 127 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhh-------------hhhhheeecccCceeeEEecccceEEecC
Confidence 3467888888887 433 5789999999999999965 44788899999999999998899999999
Q ss_pred CCeEEEEeCCCceEeEeeeccccEEEEee-cCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC-CEEEE
Q 009373 272 DMTVRVWDRALLKCLKVLRHSDWVYGLAP-HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFT 349 (536)
Q Consensus 272 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~t 349 (536)
|++|+.|.+.. ....++-....+..++. ...-++++++..|.|||.....++..+.. ....|.++.|+|.. ..|++
T Consensus 128 DKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 128 DKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILAS 205 (433)
T ss_pred CcceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchheee
Confidence 99999999865 46666666777777772 23334444467799999999999998865 45679999999976 46777
Q ss_pred EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373 350 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 427 (536)
Q Consensus 350 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 427 (536)
|+.|+.|.+||++...+ +.... -...-+.|+|+| ..+++|+.|..++.+|++..
T Consensus 206 ~~sDrsIvLyD~R~~~P------l~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l----------------- 261 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASP------LKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL----------------- 261 (433)
T ss_pred eccCCceEEEecccCCc------cceee-eeccccceecCccccceeeccccccceehhhhhh-----------------
Confidence 88999999999999843 32221 133457899998 46888999999999999986
Q ss_pred eCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcc
Q 009373 428 VEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD 505 (536)
Q Consensus 428 ~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 505 (536)
..+.....+|...|+++++++. -+++||.|.+|+||.+..+..-. .....+|+ .+.++.||-|...+.
T Consensus 262 -~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--------iYhtkRMq-~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 262 -SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--------IYHTKRMQ-HVFCVKYSMDSKYII 331 (433)
T ss_pred -cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--------hhhHhhhh-eeeEEEEeccccEEE
Confidence 4555667889999999998765 89999999999999998764322 22222333 578999999999999
Q ss_pred eeEeecccCCcC
Q 009373 506 QCSVAAKKNPMN 517 (536)
Q Consensus 506 ~~~~~~~~~~~~ 517 (536)
++|-+.+.+.+.
T Consensus 332 SGSdd~nvRlWk 343 (433)
T KOG0268|consen 332 SGSDDGNVRLWK 343 (433)
T ss_pred ecCCCcceeeee
Confidence 988777666554
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=6e-24 Score=201.78 Aligned_cols=232 Identities=19% Similarity=0.311 Sum_probs=196.5
Q ss_pred eeeeeCccccEEE-EEEec-CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEc
Q 009373 151 IDVLYGHTEAVLT-VFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 151 ~~~l~~h~~~V~~-v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~ 227 (536)
...+++|.+-|.+ +++.+ ++..+++|+.|++|.+|.+....++.++.+|...|.+++ .....+++||.|.++++|..
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI 129 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc
Confidence 4678889998888 88876 445799999999999999999999999999999999999 44445899999999999987
Q ss_pred ccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 303 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 303 (536)
.. ....+.+|+.+|.+++. ..+.++|||.|++|++|.- ++.++++. |.+.|..++ +++.
T Consensus 130 ~~---------------l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~ 192 (745)
T KOG0301|consen 130 GE---------------LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH 192 (745)
T ss_pred hh---------------hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC
Confidence 43 45558899999999988 5569999999999999985 77888887 999999998 4445
Q ss_pred EEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373 304 TVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 383 (536)
Q Consensus 304 ~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 383 (536)
++-++.||.|++|++ +|+.+.++. +|..-++++...+++..++++++|++++||+.. .+.+.+.-.+..|
T Consensus 193 flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--------e~~q~I~lPttsi 262 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--------ECVQVITLPTTSI 262 (745)
T ss_pred eEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeecC--------ceEEEEecCccce
Confidence 555555999999999 777777775 799999999988888999999999999999965 3455555556688
Q ss_pred EEEEEc-CCeEEEEeCCCcEEEEECCc
Q 009373 384 NSLAFE-FPWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 384 ~~l~~~-~~~l~s~s~dg~i~vwd~~~ 409 (536)
+++.+- ..-+++|+.||.|+||....
T Consensus 263 Wsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 263 WSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEEeeCCCEEEeccCceEEEEEecc
Confidence 888874 57899999999999998763
No 105
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.3e-23 Score=196.25 Aligned_cols=297 Identities=18% Similarity=0.170 Sum_probs=220.4
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCC--EEEEEeCCCcEEEEEc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKK--LLVAGGTDGFIHCWRA 227 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~sg~~dg~i~vwd~ 227 (536)
...+.||++.|.||...|.|.+|++|+.||+|+||.+.+|.+++++.-.. ...+++.|.+. .|+++-... +.+-+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence 45778999999999999999999999999999999999999999875432 23334445443 444444333 656554
Q ss_pred ccCcc--------ceecc---------------cC-cccccceEEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEE
Q 009373 228 VEVLP--------HLFDI---------------SG-SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVW 278 (536)
Q Consensus 228 ~~~~~--------~~~~~---------------~~-~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iw 278 (536)
.-|.. .+... .. .+....+.....|...|..+.| .|++|++...+ ..|.|.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 33310 00000 00 0011123345578899999999 78999887654 578899
Q ss_pred eCCCceEeEeee-ccccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc
Q 009373 279 DRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA 355 (536)
Q Consensus 279 d~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~ 355 (536)
++...+....|. ..+.|.++. |...++++++...|++||+...+.+..+.. ....|..++.+|.|..|+.|+.|+.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEecCCCe
Confidence 988776666664 556666666 777899999999999999999887777653 5668999999999999999999999
Q ss_pred EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee
Q 009373 356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR 433 (536)
Q Consensus 356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (536)
+..||+.-.. ++.+++.-|...|++++|++ .++++|+.||++.|+--.-....... ..--+..
T Consensus 631 ~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn----------pliVPlK 695 (733)
T KOG0650|consen 631 MCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN----------PLIVPLK 695 (733)
T ss_pred eEEEEcccCc-----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC----------CceEeee
Confidence 9999998764 67888899999999999998 68999999999999864321111000 0122345
Q ss_pred eecccccc----EEEEEecCC--EEEEecCCCeEEEE
Q 009373 434 MLHGFECN----LLSVDIGAD--RIVCGGEEGIVRIW 464 (536)
Q Consensus 434 ~~~~~~~~----v~~~~~~~~--~l~sg~~Dg~i~vW 464 (536)
.+.||... |+...|++. +|.|+|.||+|++|
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 56777766 888888887 99999999999998
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.8e-24 Score=191.67 Aligned_cols=241 Identities=19% Similarity=0.299 Sum_probs=198.4
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 235 (536)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+|+. .|+.+|++|+.||.|.+|.+..- .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l----v 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL----V 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee----c
Confidence 57799999999999999999999999999999999999999988888776 78899999999999999997542 1
Q ss_pred cccCcccccceEEeeCCccCEEEEEE-eC---CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec
Q 009373 236 DISGSEKQNTQFRLWEHEGPITSLAL-DL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS 309 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~ 309 (536)
+........+...+.+|+-+|+++.. .| .+++|+|.|.++++||+..+..+.++..+..+.++. |.++.+++|+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence 22222245678889999999999999 33 589999999999999999999999999888888877 8888888888
Q ss_pred -CCcEEEEeCCCCc----------------EEEEEcccccc--ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373 310 -GSDVYIWDTNSGC----------------LLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 370 (536)
Q Consensus 310 -d~~i~i~d~~~~~----------------~~~~~~~~~~~--~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 370 (536)
+|.|.+.++..-. .+..+ .||.+ .|+|++++-||.+|++|+.||.|.|||+.+.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~------ 309 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK------ 309 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH------
Confidence 8999988775422 23333 36777 9999999999999999999999999999888
Q ss_pred ceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCc
Q 009373 371 LLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 371 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~ 409 (536)
.+++++....++|+.+.+.| ..+..-.....+-.|++..
T Consensus 310 Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 310 QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR 351 (476)
T ss_pred HHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence 67777776788999999954 4444444444555565544
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.8e-24 Score=185.17 Aligned_cols=247 Identities=16% Similarity=0.240 Sum_probs=194.4
Q ss_pred CccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee----CCCCceEEEEecCCCEEEEEeCCCcE
Q 009373 147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKKLLVAGGTDGFI 222 (536)
Q Consensus 147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~l~sg~~dg~i 222 (536)
+...+++|..|.+.|+++.|+|....|++|+.|++|++||.......+.+ ..+.....+++|.|.+|++|..-.++
T Consensus 161 ~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 161 RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence 34678999999999999999999999999999999999999765332222 22334445566999999999999999
Q ss_pred EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccc-cEEE
Q 009373 223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSD-WVYG 297 (536)
Q Consensus 223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~-~v~~ 297 (536)
++||+++-..... ...-.+|++.|+++.+ .++..++||.||.|++||--+++|+.++. |.+ .|.+
T Consensus 241 rlYdv~T~Qcfvs----------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 241 RLYDVNTYQCFVS----------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCS 310 (430)
T ss_pred eEEeccceeEeee----------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeee
Confidence 9999987542111 1123469999999999 77899999999999999999999999987 544 4555
Q ss_pred Ee--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccc----cccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccccc
Q 009373 298 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEAN 369 (536)
Q Consensus 298 ~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~ 369 (536)
.. .+++++.+.+ |..+++|.+.+++.+..+..+ ....-+...|+....+++.-.+ .+.+.-||.++...
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr--- 387 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR--- 387 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh---
Confidence 44 7899999888 999999999999999988632 1112234557777787776554 46799999998842
Q ss_pred cceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373 370 VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 370 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 408 (536)
....-.+|++.+..+.-+| .-+++++.|-.+++|--+
T Consensus 388 --~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 388 --VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred --hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 2222358999999999998 689999999999999644
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=187.68 Aligned_cols=283 Identities=15% Similarity=0.218 Sum_probs=215.3
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCce--EEEEecCCC-EEEEEeCCCcEEEEEcccCcc
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCT--IRAVAADKK-LLVAGGTDGFIHCWRAVEVLP 232 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~--v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~ 232 (536)
.++|++|.|+|...+|++|+.|++++||.++.. ..+..+.-...+ ..++.|+|. .+++++.....+.||+++.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 478999999999999999999999999998643 344444433444 456679998 999999999999999988652
Q ss_pred ceecccCcccccceEEeeCCc-cCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEE
Q 009373 233 HLFDISGSEKQNTQFRLWEHE-GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAS 307 (536)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~ 307 (536)
..+..+.++. ..+..+.. ++++|+..+..|.|.+....+++.+..+...+.|..+. .+++.|++
T Consensus 293 -----------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 293 -----------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred -----------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence 2233333443 23333433 78899999999999999999999999999888888776 66776665
Q ss_pred ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEE
Q 009373 308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 386 (536)
Q Consensus 308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 386 (536)
++ +|.|.+||++...++.++.....-.-++++.+++|.+||+|+..|.|.|||..+......++++.++..-...|++|
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 55 89999999999999998864333345677888999999999999999999987766666668888888888999999
Q ss_pred EEcC--CeEEEEeC--CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCe
Q 009373 387 AFEF--PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGI 460 (536)
Q Consensus 387 ~~~~--~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~ 460 (536)
+|++ ..|+.+|. +..+++-.+.+..--.. ++.. .+.-..|.|++|++ .+||.|..+|.
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN------------fP~~----n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSN------------FPTS----NTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceeeecc------------CCCC----CCcccceEEEEecCCCceEEeecCCCc
Confidence 9986 56666664 67888888776321110 0111 11224456666665 49999999999
Q ss_pred EEEEeCC
Q 009373 461 VRIWNFS 467 (536)
Q Consensus 461 i~vW~~~ 467 (536)
|.+|.+.
T Consensus 506 v~l~kL~ 512 (514)
T KOG2055|consen 506 VHLFKLH 512 (514)
T ss_pred eeeEeec
Confidence 9999874
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=6.5e-24 Score=194.11 Aligned_cols=270 Identities=20% Similarity=0.290 Sum_probs=211.1
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeeeCC--CCceEEE--EecCCCEEEEEeCCCcEEEEEcc
Q 009373 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKP--LGCTIRA--VAADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~---~~~~~~~~--~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~ 228 (536)
.|..-|.++.++...++++||+. |-|+|||+... ..+..+.. ....+.+ +.+||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888999999998999999985 78999999643 22333321 2334443 45999999999999999999997
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 303 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 303 (536)
..... ....+....-...+++. |.+..+++..||.|.|||+.+...+..+. |.+.+.|+. .+|.
T Consensus 496 apTpr-----------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 496 APTPR-----------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred CCCcc-----------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence 65421 11222222334455555 77889999999999999999999999998 888888887 7899
Q ss_pred EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373 304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
.|.+|+ |++|+.||+++++.+.... ..+.|.++.++|++.+|++|-+++.+-|-..... .-..+.-|.+.
T Consensus 565 klWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-------~kyqlhlheSc 635 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-------EKYQLHLHESC 635 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEEecCCc-------cceeecccccE
Confidence 999999 9999999999998887753 6789999999999999999999999988887655 23456679999
Q ss_pred eEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEE--EEEecCCEEEEecCC
Q 009373 383 VNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGEE 458 (536)
Q Consensus 383 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~D 458 (536)
|.++.|. +.++++.+.|.-+..|...-+...+... -..+|+ .++++..+++||+.|
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------------------E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------------------ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceeecc--------------------ccCcceeeeeccCceEEEecCCC
Confidence 9999996 5899999999999999887654433221 123444 455566699999999
Q ss_pred CeEEEEeC
Q 009373 459 GIVRIWNF 466 (536)
Q Consensus 459 g~i~vW~~ 466 (536)
....||.+
T Consensus 696 kkATVYeV 703 (705)
T KOG0639|consen 696 KKATVYEV 703 (705)
T ss_pred cceEEEEE
Confidence 99999875
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=5.6e-23 Score=195.56 Aligned_cols=286 Identities=17% Similarity=0.229 Sum_probs=214.1
Q ss_pred eeeeeCccccEEEEEEecC-----------CCEEEEEeCCCcEEEEECCCCc---eeee----------e----------
Q 009373 151 IDVLYGHTEAVLTVFVLAS-----------AKLLFTSGYDSIVRMWHLEDGF---SIAS----------S---------- 196 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~-----------~~~l~sgs~dg~v~iwd~~~~~---~~~~----------~---------- 196 (536)
...+--|...|+.+.--|. ...++|++.|++||+|+++.+. ..+. .
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 3456678888888876652 1358999999999999997631 1100 0
Q ss_pred --------------CC--CCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEE
Q 009373 197 --------------KP--LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 260 (536)
Q Consensus 197 --------------~~--~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 260 (536)
-. .+...++++|++++|++|..-|+++||++..- .....+..|.+.|.|+.
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-------------~~~~~~eAHesEilcLe 508 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-------------EYTCFMEAHESEILCLE 508 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-------------hhhhheecccceeEEEe
Confidence 00 12234567799999999999999999999653 35556778999999999
Q ss_pred E-----eCCEEEEEecCCeEEEEeCCCc-eEeEeee-ccccEEEEe--ecC--CEEEEec-CCcEEEEeCCCCcEEEEEc
Q 009373 261 L-----DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--PHD--TTVASTS-GSDVYIWDTNSGCLLTVVN 328 (536)
Q Consensus 261 ~-----~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~--~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~ 328 (536)
+ ..++|++++.|+.|.+||.... ..++++. |...|+++. .+| ..+++++ |..|.+--.+.......+.
T Consensus 509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 9 2367999999999999998643 4456666 899999987 333 3444444 7666543333211112222
Q ss_pred cc----cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc---CCCCCeEEEEEcC--CeEEEEeCC
Q 009373 329 GA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---PHTGPVNSLAFEF--PWLVSAAGD 399 (536)
Q Consensus 329 ~~----~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s~s~d 399 (536)
.+ ....++.++..|..+++++++.|..|+|||+.++ +..+.++ +|.+....+..+| .||++...|
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg------Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG------KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEecccc------ceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 11 2346899999999999999999999999999999 4444444 5777888888877 699999999
Q ss_pred CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHH
Q 009373 400 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIER 474 (536)
Q Consensus 400 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~ 474 (536)
.++.++|.-+ .++...+.||...|+.+.|.++ .|++.+.||.|.||.++....+.-
T Consensus 663 ktl~~~Df~s-------------------gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~m 720 (1080)
T KOG1408|consen 663 KTLCFVDFVS-------------------GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIRM 720 (1080)
T ss_pred CceEEEEecc-------------------chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhHHH
Confidence 9999999988 4555667899999999999887 999999999999999998655443
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.7e-23 Score=179.60 Aligned_cols=255 Identities=18% Similarity=0.231 Sum_probs=197.6
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee
Q 009373 173 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW 250 (536)
Q Consensus 173 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 250 (536)
+++.-.+++++ .+.++.+.+|...|+.++. ....+.+++.|.+.++|.++++. ++.++.
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------------CL~~Y~ 187 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------------CLATYT 187 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------------ceeeec
Confidence 44444555533 2455667899999988873 34588899999999999998864 888999
Q ss_pred CCccCEEEEEE--eCCEEEEEecCCeEEEEeC------CCc----------------------------------eEeEe
Q 009373 251 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDR------ALL----------------------------------KCLKV 288 (536)
Q Consensus 251 ~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~------~~~----------------------------------~~~~~ 288 (536)
||.+.|+++.| .+.++++++.|++..||.. ... .++..
T Consensus 188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 99999999999 5678899999999999961 110 01111
Q ss_pred ee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 289 LR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 289 ~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
+. |...|.+.. ..++.+++++ |.+..+||+++++.+..+. ||....+.++-+|..+++++++.|.+.++||++..
T Consensus 268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred eeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence 22 444454444 5678888888 9999999999999999885 79999999999999999999999999999999855
Q ss_pred ccccccceeeeccCCCCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec-cccccE
Q 009373 365 CTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFECNL 442 (536)
Q Consensus 365 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 442 (536)
- ..+..|.||+..|+++.|. ...+++|+.|.+|+|||+++...+ ..++. ....+-
T Consensus 347 I-----~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp------------------lATIRtdS~~NR 403 (481)
T KOG0300|consen 347 I-----QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP------------------LATIRTDSPANR 403 (481)
T ss_pred c-----ceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc------------------ceeeecCCccce
Confidence 2 5678899999999999997 489999999999999999986322 11221 222333
Q ss_pred EEEEecCCEEEEecCCCeEEEEeCCchh
Q 009373 443 LSVDIGADRIVCGGEEGIVRIWNFSQAF 470 (536)
Q Consensus 443 ~~~~~~~~~l~sg~~Dg~i~vW~~~~~~ 470 (536)
..++-.+..++.--++..|++||+....
T Consensus 404 vavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 404 VAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eEeecCCceEEeccCCceEEEEecCCCc
Confidence 4555555578888888999999998643
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=199.74 Aligned_cols=237 Identities=18% Similarity=0.225 Sum_probs=200.8
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec-----CCCEEEEEeCCCcEEEEEccc
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA-----DKKLLVAGGTDGFIHCWRAVE 229 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~~~ 229 (536)
.+-..+|.+++.+|+|.+||+|..-|+++||++..-+....+..|...|.|+.. ..++|++++.|..|+|+|+..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 355678999999999999999999999999999999999999999999999973 356899999999999999865
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEE--eC--CEEEEEecCCeEEEEeCCC---ceEeEeee---ccccEEEEe
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL--TRIYSGSWDMTVRVWDRAL---LKCLKVLR---HSDWVYGLA 299 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~dg~i~iwd~~~---~~~~~~~~---~~~~v~~~~ 299 (536)
. .....++.+|.+.|+++.| ++ ..+++++.|+.|.+--.+. +.....-. ....++.+.
T Consensus 536 n------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 536 N------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred c------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 4 4567788999999999999 44 5789999999876543321 22211111 234566666
Q ss_pred --ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc--ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373 300 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 374 (536)
Q Consensus 300 --~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 374 (536)
|..++++++. |..|+|||+.+++..+.|+. +|.+....+...|.|.|+++.+.|.++.++|+.++ +++.
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg------EcvA 677 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG------ECVA 677 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc------hhhh
Confidence 8888888888 99999999999999999975 46677888999999999999999999999999999 8999
Q ss_pred eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 375 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 375 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
.+.||...|+.+.|.+ ++|++.+.||.|.||.+..
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999976 7999999999999999853
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.6e-22 Score=174.62 Aligned_cols=270 Identities=15% Similarity=0.162 Sum_probs=197.2
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCc
Q 009373 205 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALL 283 (536)
Q Consensus 205 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~ 283 (536)
.+++.++.|++++.||++++|++... .......|..++.+.+| +...+++|+.||.|+.+|+.++
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~--------------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPAN--------------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccch--------------hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence 44477888999999999999998653 22234468999999999 7789999999999999999999
Q ss_pred eEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373 284 KCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 284 ~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd 360 (536)
.....-.|...|.++. +....+++|+ |++|++||.+.......+. ....|.++... |+.|++|+.|..|.+||
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~--g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVS--GNRLVVGTSDRKVLIYD 161 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEecc--CCEEEEeecCceEEEEE
Confidence 8888888999999998 5567777888 9999999999866665553 44578887764 78999999999999999
Q ss_pred cccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc
Q 009373 361 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF 438 (536)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (536)
+++..... ...-..-...+.|+++-| .-.++++-||.|.+=.++......+ -+-..+.+.... .....
T Consensus 162 LRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s---kkyaFkCHr~~~-~~~~~-- 231 (323)
T KOG1036|consen 162 LRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS---KKYAFKCHRLSE-KDTEI-- 231 (323)
T ss_pred cccccchh----hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh---hceeEEeeeccc-CCceE--
Confidence 99874321 111223456788999877 6788899999998866654311000 000000000000 00011
Q ss_pred cccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373 439 ECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK 512 (536)
Q Consensus 439 ~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 512 (536)
--+|.+++|++. .|||||.||.|.+||+.+.+.+.++.+- ...+..++|+.+|..+|+++....
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~----------~~SI~slsfs~dG~~LAia~sy~y 297 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY----------ETSISSLSFSMDGSLLAIASSYQY 297 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC----------CCceEEEEeccCCCeEEEEechhh
Confidence 134666676665 8999999999999999998777665443 233578999999999999765433
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.9e-22 Score=172.05 Aligned_cols=272 Identities=14% Similarity=0.145 Sum_probs=202.5
Q ss_pred eeeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEE
Q 009373 194 ASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 269 (536)
Q Consensus 194 ~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 269 (536)
+.+......+.+ ++.+|..+++++.|.++++||..++. ...++..+.-.|..++| ..+.++.+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------------~~~ti~skkyG~~~~~Fth~~~~~i~s 74 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------------QVKTINSKKYGVDLACFTHHSNTVIHS 74 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------------eeeEeecccccccEEEEecCCceEEEc
Confidence 334444455555 45889999999999999999997764 55566666667777777 56667766
Q ss_pred ec--CCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC
Q 009373 270 SW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 343 (536)
Q Consensus 270 s~--dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~ 343 (536)
+. |.+|+..++.+.+.++.+. |...|++++ |-+..+++++ |.+|++||++..++...+ +...-..++|+|+
T Consensus 75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l---~~~~~pi~AfDp~ 151 (311)
T KOG1446|consen 75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL---NLSGRPIAAFDPE 151 (311)
T ss_pred cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE---ecCCCcceeECCC
Confidence 65 8999999999999999998 999999987 8888899888 999999999988877766 3334456789999
Q ss_pred CCEEEEEcCCCcEEEEEcccCccccccceeeecc---CCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373 344 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS 418 (536)
Q Consensus 344 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 418 (536)
|-++|++.....|++||++.-.. .+..++. +.....+.|.|+| ++|+.+...+.+++.|.-++........
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dk----gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDK----GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCC----CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence 99999999888999999987632 1222222 4577889999986 7999999999999999877643221111
Q ss_pred CCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccc
Q 009373 419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMS 498 (536)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (536)
. +. .+....-.++.|+++++++|+.||+|.+|+++++..+........+ ...++.|+
T Consensus 228 ~----------~~----~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~---------~~~~~~fn 284 (311)
T KOG1446|consen 228 Y----------PN----AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGG---------PVSCVRFN 284 (311)
T ss_pred c----------cC----CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCC---------CccccccC
Confidence 0 00 0001123456678889999999999999999999888765443111 23566688
Q ss_pred cCCCCcceeE
Q 009373 499 SKGGRTDQCS 508 (536)
Q Consensus 499 ~~g~~~~~~~ 508 (536)
|.--+.++++
T Consensus 285 P~~~mf~sa~ 294 (311)
T KOG1446|consen 285 PRYAMFVSAS 294 (311)
T ss_pred CceeeeeecC
Confidence 8887777653
No 115
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=8.4e-23 Score=192.26 Aligned_cols=289 Identities=19% Similarity=0.209 Sum_probs=209.7
Q ss_pred eeeeCccccEEE--EEEecC---CCEEEEEeCCCcEEEEECCCCc------eeeeeCCCCceEEEEe--cCCCEEEEEeC
Q 009373 152 DVLYGHTEAVLT--VFVLAS---AKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--ADKKLLVAGGT 218 (536)
Q Consensus 152 ~~l~~h~~~V~~--v~~~~~---~~~l~sgs~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~--~~~~~l~sg~~ 218 (536)
.....|.-+|.- ..|++. ...|+.+.+||.|.++|..... .+.....|...|..+. |....|++++.
T Consensus 41 ~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 41 TSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred cccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence 333344444443 566653 4589999999999999986542 2456678999999887 66668999999
Q ss_pred CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce-----------
Q 009373 219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK----------- 284 (536)
Q Consensus 219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~----------- 284 (536)
|.++++||+.+.. ..-...+.||.+.|.+++| ++..|++|+.||.|.|||++-..
T Consensus 121 DsT~r~Wdvk~s~-----------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 121 DSTIRPWDVKTSR-----------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred Cceeeeeeeccce-----------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 9999999998754 2223347899999999999 77899999999999999975321
Q ss_pred ---------EeEeee--------cccc----EEEEe-ecCCEEEEec--CCcEEEEeCCCCcEEEEEc-------ccc--
Q 009373 285 ---------CLKVLR--------HSDW----VYGLA-PHDTTVASTS--GSDVYIWDTNSGCLLTVVN-------GAH-- 331 (536)
Q Consensus 285 ---------~~~~~~--------~~~~----v~~~~-~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~-------~~~-- 331 (536)
..+.+. +... |+.+. .|...|++++ |+.|+|||++......... ..|
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence 000000 2222 33343 6778888877 8999999999865433221 012
Q ss_pred -ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC---e-EEEEEcCCeEEEEeCCCcEEEEE
Q 009373 332 -VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP---V-NSLAFEFPWLVSAAGDGKLSLID 406 (536)
Q Consensus 332 -~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~---v-~~l~~~~~~l~s~s~dg~i~vwd 406 (536)
.-.+.++..+..|.+|++.+.|+.|++|++..... .++..+.++... | ..+.+++.+|++|+.|...++|.
T Consensus 270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 33678888888899999989999999999988643 344444444321 1 23344568999999999999999
Q ss_pred CCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeEEEEeCCchhhHH
Q 009373 407 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIE 473 (536)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~ 473 (536)
+.+. ..+...+.||...|+++.+.+. -++|+++|-++++|++..+.+-.
T Consensus 346 vs~~------------------e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 346 VSSP------------------EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred ecCc------------------cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 9875 3444567889999998887665 68888999999999998765543
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.9e-22 Score=172.79 Aligned_cols=218 Identities=22% Similarity=0.343 Sum_probs=164.9
Q ss_pred CCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccceec-c-cCcccccceEEeeCCccCEEEEEE---eCCEEEE
Q 009373 197 KPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFD-I-SGSEKQNTQFRLWEHEGPITSLAL---DLTRIYS 268 (536)
Q Consensus 197 ~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~-~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s 268 (536)
..|++.|.++. ..|+++++|+.||.|.+||++.....-.. + .............+|.-.|.++.| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45667777666 45889999999999999999764310000 0 000000011123467788999998 8899999
Q ss_pred EecCCeEEEEeCCCceEeEeeeccccEEEEe--e---cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373 269 GSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P---HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH 342 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~---~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~ 342 (536)
++.|.++++||.++.+....+..++.|++-+ | .--++++|. +-.|++.|+.+|.....+. ||.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEecc
Confidence 9999999999999999999999888887644 2 234566666 7889999999999999985 7999999999999
Q ss_pred CCCE-EEEEcCCCcEEEEEcccCcc---------ccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcc
Q 009373 343 TGDF-LFTGGEDGAIHMYEIINDCT---------EANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 343 ~~~~-l~tg~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 410 (536)
...+ |++|+.||.|++||++.... ......+.+-..|.+.|++++|. +.++++++.|..+++|+..++
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 8875 78899999999999976421 01122334466899999999996 489999999999999999887
Q ss_pred cccCC
Q 009373 411 LRSGR 415 (536)
Q Consensus 411 ~~~~~ 415 (536)
.....
T Consensus 279 ~ntl~ 283 (397)
T KOG4283|consen 279 RNTLR 283 (397)
T ss_pred ccccc
Confidence 55443
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.3e-23 Score=184.53 Aligned_cols=241 Identities=19% Similarity=0.225 Sum_probs=184.0
Q ss_pred CCCEEEEEeCCCcEEEEEcccCccc--eecccCcc------cccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEE
Q 009373 209 DKKLLVAGGTDGFIHCWRAVEVLPH--LFDISGSE------KQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRV 277 (536)
Q Consensus 209 ~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~~~------~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~i 277 (536)
.|+++|.|+.|..|.|||+.--... .+.+.... ..+......+|++.|.+++|+ .+.|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4679999999999999998533211 11111100 011122344799999999994 468999999999999
Q ss_pred EeCCCceEeEeee-ccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcE-EEEEccccccceEEEEEeCCC-CEEEEE
Q 009373 278 WDRALLKCLKVLR-HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTG-DFLFTG 350 (536)
Q Consensus 278 wd~~~~~~~~~~~-~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~~-~~l~tg 350 (536)
||+.++++..++. |...|.++. ..+.++++|+ |++|.+.|.+.... -..+ ...+.|-.++|.|.. ..++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--EeccceEEEEecCCCceeEEEe
Confidence 9999999999999 899999998 4567888888 99999999995322 2222 256789999999865 467888
Q ss_pred cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc---CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373 351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 427 (536)
Q Consensus 351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 427 (536)
..||+|+-+|+|... .++.++.+|.++|.+|.++ |+++++++.|+.|++|++........
T Consensus 349 tddG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v------------ 411 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV------------ 411 (463)
T ss_pred cCCceEEeeecCCCC-----CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc------------
Confidence 899999999999885 7899999999999999997 58999999999999999975322111
Q ss_pred eCCCeeeecccc---ccEEEEEecCC---EEEEecCCCeEEEEeCCchhhHHHHH
Q 009373 428 VEPPQRMLHGFE---CNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIERRA 476 (536)
Q Consensus 428 ~~~~~~~~~~~~---~~v~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~~~~ 476 (536)
..|. ....|++++++ .++.||..+.++|||+.++..+.+.+
T Consensus 412 --------~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 412 --------KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred --------ccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 1111 12445566665 89999999999999999987776543
No 118
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=3.4e-22 Score=199.83 Aligned_cols=262 Identities=16% Similarity=0.166 Sum_probs=206.7
Q ss_pred CCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC------------------
Q 009373 128 DKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED------------------ 189 (536)
Q Consensus 128 ~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~------------------ 189 (536)
..+|......+..+.+...=...+.++..|.+.|+|+.|+|||.+||+||+|+.|.||....
T Consensus 39 ~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~ 118 (942)
T KOG0973|consen 39 IVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVES 118 (942)
T ss_pred ceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccce
Confidence 34787665544333322222235678889999999999999999999999999999999873
Q ss_pred CceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe--CCE
Q 009373 190 GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTR 265 (536)
Q Consensus 190 ~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~ 265 (536)
.++...+.+|...|..+. |++.+|++++.|++|.+||..+. .....+.+|.+.|..+.|| |++
T Consensus 119 wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-------------~~~~vl~~H~s~VKGvs~DP~Gky 185 (942)
T KOG0973|consen 119 WKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-------------ELLKVLRGHQSLVKGVSWDPIGKY 185 (942)
T ss_pred eeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-------------eeeeeeecccccccceEECCccCe
Confidence 135677889999998775 88999999999999999998764 4677899999999999995 589
Q ss_pred EEEEecCCeEEEEeCCCceEeEeee-------ccccEEEEe--ecCCEEEEec--C---CcEEEEeCCCCcEEEEEcccc
Q 009373 266 IYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVYGLA--PHDTTVASTS--G---SDVYIWDTNSGCLLTVVNGAH 331 (536)
Q Consensus 266 l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~--~~~~~l~~~~--d---~~i~i~d~~~~~~~~~~~~~~ 331 (536)
|++-+.|++|++|++.+..+.+.+. .......++ |+|.+|++.. + ..+.|.+-.+-+.-..+. ||
T Consensus 186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-GH 264 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-GH 264 (942)
T ss_pred eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-cC
Confidence 9999999999999988877777765 122333443 9999999876 2 458888887777666664 79
Q ss_pred ccceEEEEEeCC-------------CC----EEEEEcCCCcEEEEEcccCccccccceeee-ccCCCCCeEEEEEcC--C
Q 009373 332 VGNTKSLARSHT-------------GD----FLFTGGEDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF--P 391 (536)
Q Consensus 332 ~~~i~~l~~~~~-------------~~----~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~--~ 391 (536)
.+++.++.|+|. +. .+|+|+.|++|.||..... +++.. ..-....|..++|+| -
T Consensus 265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~------RPl~vi~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP------RPLFVIHNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC------CchhhhhhhhcCceeeeeEcCCCC
Confidence 999999999982 11 6889999999999998666 23222 223467899999985 6
Q ss_pred eEEEEeCCCcEEEEECCc
Q 009373 392 WLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 392 ~l~s~s~dg~i~vwd~~~ 409 (536)
.|+++|.||+|.+..++.
T Consensus 339 ~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 339 SLFACSLDGTVALIHFEE 356 (942)
T ss_pred eEEEEecCCeEEEEEcch
Confidence 899999999999999875
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.4e-22 Score=192.81 Aligned_cols=236 Identities=21% Similarity=0.249 Sum_probs=197.0
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccc
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPH 233 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 233 (536)
++|+.+-+.|+|.|+|.+|++++.||.|++|+.... +...++..++..+.++...++.|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~-- 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE-- 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC--
Confidence 579999999999999999999999999999998766 44444444888999999999999999999999999987663
Q ss_pred eecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEe
Q 009373 234 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAST 308 (536)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~ 308 (536)
....+...+-++.++++ +|++++.||.|-.|++-+..+......+. |.++|.++. |.+++|++.
T Consensus 88 -----------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 88 -----------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred -----------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 12223345678888999 66799999999999999999888877777 999999998 889999998
Q ss_pred c-CCcEEEEeCCCCcEEEEEcc-------ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec--cC
Q 009373 309 S-GSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IP 378 (536)
Q Consensus 309 ~-d~~i~i~d~~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~ 378 (536)
+ ||.|++||+.++....++.. .....+..++|+|+|..+++.+.|+.|++|+..+.. ....+ ..
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we------~~f~Lr~~~ 230 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE------LQFKLRDKL 230 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce------eheeecccc
Confidence 8 99999999999887666532 113467789999998889999999999999988873 33332 23
Q ss_pred CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
+...+..++|+| .|||+++.||.|.|||+++
T Consensus 231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 455599999987 7999999999999999987
No 120
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=7.1e-21 Score=184.66 Aligned_cols=341 Identities=15% Similarity=0.186 Sum_probs=249.6
Q ss_pred CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ce----eeeeCCCCceEEEEe-cC--CCEEEEEe
Q 009373 146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FS----IASSKPLGCTIRAVA-AD--KKLLVAGG 217 (536)
Q Consensus 146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-~~----~~~~~~~~~~v~~~~-~~--~~~l~sg~ 217 (536)
+|+....++.+|...|.-+.. -|..++++..++.+.||+..++ .. +...+.....|.++. |. -+.++.|+
T Consensus 102 rgk~i~~~~~~~~a~v~~l~~--fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs 179 (910)
T KOG1539|consen 102 RGKHIRHTTLLHGAKVHLLLP--FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGS 179 (910)
T ss_pred ccceEEEEeccccceEEEEee--ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEee
Confidence 466667888899988876643 4899999999999999999874 11 112222333377765 44 35789999
Q ss_pred CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeeecc-cc
Q 009373 218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLRHS-DW 294 (536)
Q Consensus 218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~ 294 (536)
..|.+.+|++++++ .+.++.++.+.|+++.-.+ +.++.|..+|+|.+++++.++.+..+++. +.
T Consensus 180 ~~G~lql~Nvrt~K-------------~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~ 246 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGK-------------VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGR 246 (910)
T ss_pred cCCcEEEEEeccCc-------------EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccc
Confidence 99999999998864 7888999999999998855 78999999999999999999999999986 99
Q ss_pred EEEEe--ecCCEEEE-ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc---
Q 009373 295 VYGLA--PHDTTVAS-TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE--- 367 (536)
Q Consensus 295 v~~~~--~~~~~l~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--- 367 (536)
|++++ .+|+.+.+ +. .|.+.+||++..+.+......|.+.|....|.|....+++++.|..+++|=..++...
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence 99998 55765544 44 5999999999999888888789899999999998889999999988777744311100
Q ss_pred ------------------------------------------------------------------cccce---------
Q 009373 368 ------------------------------------------------------------------ANVLL--------- 372 (536)
Q Consensus 368 ------------------------------------------------------------------~~~~~--------- 372 (536)
....+
T Consensus 327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 00000
Q ss_pred -----------------eeec-----------------cCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCC
Q 009373 373 -----------------VATW-----------------IPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRP 416 (536)
Q Consensus 373 -----------------~~~~-----------------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~ 416 (536)
..++ +.....+++++.+ +++.+.|...|.|-+|++.++....+.
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence 0000 0011345555554 588888888899999998876433322
Q ss_pred CCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHH------------------
Q 009373 417 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRA------------------ 476 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~------------------ 476 (536)
. .-..|...|.+++.++. .++|++.||.+++||+..........
T Consensus 487 ~----------------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 487 G----------------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLA 550 (910)
T ss_pred c----------------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhh
Confidence 1 01357788888888775 79999999999999999876322110
Q ss_pred -------------HhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCcC
Q 009373 477 -------------RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMN 517 (536)
Q Consensus 477 -------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 517 (536)
...+-.|....+..+.+.++|||||+.+++++.+.+-+.++
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 00111222334677889999999999999999988877665
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=178.44 Aligned_cols=279 Identities=19% Similarity=0.276 Sum_probs=204.7
Q ss_pred EEeCCC-cEEEEECCCCceeeeeCCCC-ceEEEEe-cCCCEEEEEeC-CCcEEEEEcccCccceecccCcccccceEEee
Q 009373 175 TSGYDS-IVRMWHLEDGFSIASSKPLG-CTIRAVA-ADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW 250 (536)
Q Consensus 175 sgs~dg-~v~iwd~~~~~~~~~~~~~~-~~v~~~~-~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 250 (536)
+++.|. ++.+||+.+|....++++.. ..-.++. -.+.+++++.. -..+.+|.+.... ......
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~-------------~~~q~~ 78 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKD-------------QVVQYI 78 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchh-------------hhhhhc
Confidence 444454 49999999999988887652 2222222 34456666544 4578999885432 111222
Q ss_pred CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCC-----
Q 009373 251 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTN----- 319 (536)
Q Consensus 251 ~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~----- 319 (536)
--.++|.+++- +|.+|+.|+..|.+++|.+.+|..+..+. |-..|+++. -++.++++++ ||.|.+|++.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 34678999988 56677777799999999999999998887 999999987 7889999999 9999999764
Q ss_pred ----CCcEEEEEccccccceEEEEEeCCC--CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C
Q 009373 320 ----SGCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P 391 (536)
Q Consensus 320 ----~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~ 391 (536)
+-+++..+. .|.-+|+.+...+.| .+|+|+|.|.++++||+..+ ..+.++ ....++.+++.+| .
T Consensus 159 ~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g------~LLlti-~fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 159 DNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG------VLLLTI-TFPSSIKAVALDPAER 230 (476)
T ss_pred ccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccc------eeeEEE-ecCCcceeEEEccccc
Confidence 235666675 699999999987754 58999999999999999998 444443 3456889999998 7
Q ss_pred eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc--cEEEEE--ecCCEEEEecCCCeEEEEeCC
Q 009373 392 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVD--IGADRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 392 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~--~~~~~l~sg~~Dg~i~vW~~~ 467 (536)
.++.|+.+|.|.+.++........ +-..............+.||.. .|++++ .++..|++|+.||.|+|||+.
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~---~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSA---GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccc---cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 999999999999999876431110 0001111122334455677776 565555 677799999999999999999
Q ss_pred chhhHHHHHH
Q 009373 468 QAFEIERRAR 477 (536)
Q Consensus 468 ~~~~~~~~~~ 477 (536)
+...+++...
T Consensus 308 S~Q~iRtl~~ 317 (476)
T KOG0646|consen 308 SKQCIRTLQT 317 (476)
T ss_pred hHHHHHHHhh
Confidence 9988887763
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.7e-21 Score=167.59 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=188.9
Q ss_pred ceEEEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEE
Q 009373 201 CTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV 277 (536)
Q Consensus 201 ~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~i 277 (536)
...++|+| ...++++||.||+|++|+++... .........|.++|.+++| +|..+++|+.|+.+++
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----------~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----------QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCC-----------cccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 34566677 56677799999999999997631 1111335579999999999 8899999999999999
Q ss_pred EeCCCceEeEeeeccccEEEEe----ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC
Q 009373 278 WDRALLKCLKVLRHSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 352 (536)
Q Consensus 278 wd~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~ 352 (536)
||+.+++..+.-.|.++|.++. +.-..|++|+ |.+|+.||++...++.++. ..+.++++..- ..+++++..
T Consensus 99 wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~--~pm~vVata 174 (347)
T KOG0647|consen 99 WDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL--YPMAVVATA 174 (347)
T ss_pred EEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhcc--CceeEEEec
Confidence 9999998777777999999987 3345789999 9999999999999998885 66777777653 467888999
Q ss_pred CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccc--cCCCCCCCceeeEEee
Q 009373 353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLR--SGRPTSGKRVSRVIEV 428 (536)
Q Consensus 353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~ 428 (536)
+..|.+|+++++..+. +.+. ..-.-.+.||+.. .+..+.|+-+|.+.+..+..+.+ .+.+..++.
T Consensus 175 ~r~i~vynL~n~~te~--k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~------- 243 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEF--KRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS------- 243 (347)
T ss_pred CCcEEEEEcCCCcchh--hhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc-------
Confidence 9999999998773221 1111 1223456777763 45669999999999999887532 111111110
Q ss_pred CCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcce
Q 009373 429 EPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 506 (536)
Q Consensus 429 ~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 506 (536)
... ..+.--.|.+++|.+. .|+|+|.||+..+||-+....+.+.... ...+++..|+.+|...|-
T Consensus 244 ~~~---~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~----------~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 244 TNS---VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH----------PQPITCCSFNRNGSIFAY 310 (347)
T ss_pred CCC---CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC----------CCccceeEecCCCCEEEE
Confidence 000 0011123445555554 8999999999999998876555443222 223466777777777765
Q ss_pred e
Q 009373 507 C 507 (536)
Q Consensus 507 ~ 507 (536)
+
T Consensus 311 A 311 (347)
T KOG0647|consen 311 A 311 (347)
T ss_pred E
Confidence 3
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.6e-20 Score=172.27 Aligned_cols=298 Identities=18% Similarity=0.246 Sum_probs=214.6
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccce---
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHL--- 234 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~--- 234 (536)
.-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++ .....|++|+.|..|..||-.-.+..-
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccC
Confidence 5699999999887 78999999999999988888777779999999988 444566779999999999832211100
Q ss_pred ------------------------ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373 235 ------------------------FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV 288 (536)
Q Consensus 235 ------------------------~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~ 288 (536)
+-+.+.-.........+|......++. +.+.+++++.|+.+++|+ ..+...+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 001111222233445578888888877 567899999999999999 5566666
Q ss_pred eeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373 289 LRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 365 (536)
Q Consensus 289 ~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~ 365 (536)
....+++.|+. |.| .++.|. .|...+.|.++...+..-. ...++++++|+|+|.+||.|+.|+.|+||-+....
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 55556666655 888 777777 8999999999966555543 37899999999999999999999999999997764
Q ss_pred cccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCC-------------------CCC-----
Q 009373 366 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRP-------------------TSG----- 419 (536)
Q Consensus 366 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-------------------~~~----- 419 (536)
. ....+... |.++|+.+.|++ ++|.+-+.|-.|..|......+.... ..+
T Consensus 481 ~--~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a 556 (626)
T KOG2106|consen 481 R--KYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINA 556 (626)
T ss_pred c--EEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHH
Confidence 2 12233333 348999999975 79999999999999954432222110 000
Q ss_pred -------------CceeeEE-------eeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeC
Q 009373 420 -------------KRVSRVI-------EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF 466 (536)
Q Consensus 420 -------------~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~ 466 (536)
.....+. .+..+.....+|+..+.+++|..+ .+++.+.|..|..|++
T Consensus 557 ~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 557 VARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 0000011 122334456788888888887654 7777779999999986
No 124
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.7e-22 Score=193.30 Aligned_cols=243 Identities=16% Similarity=0.233 Sum_probs=180.5
Q ss_pred Eee-CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC--------------------------------c---------
Q 009373 248 RLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL--------------------------------L--------- 283 (536)
Q Consensus 248 ~~~-~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~--------------------------------~--------- 283 (536)
.+. .|.+.|.++.| +|++||+|+.||.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 79999999999 999999999999999997544 0
Q ss_pred -------------------eEeEeee-ccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe
Q 009373 284 -------------------KCLKVLR-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS 341 (536)
Q Consensus 284 -------------------~~~~~~~-~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~ 341 (536)
+++..+. |.+.|..++ ..+.+|++++ |.+|++|++....++..|. |..-|+|++|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEec
Confidence 0111111 566677777 4566777777 9999999999999999995 99999999999
Q ss_pred C-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373 342 H-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS 418 (536)
Q Consensus 342 ~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 418 (536)
| |.++|++|+-||.|+||++... .+..+..-..-|++++|.| .+.+.|+.+|.+++|+....+......-
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~-------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDK-------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCcC-------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9 6689999999999999999887 3444445558999999976 7999999999999999886432211100
Q ss_pred CCceeeEEeeCCCeeeeccccccEEEEEecC---CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcc
Q 009373 419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT 495 (536)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (536)
. ....+... |. .|+.+.+.+ +.++..+.|..|||+|..+...+..+...... ......
T Consensus 492 ~---------~~~~Kk~~-~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--------~SQ~~A 552 (712)
T KOG0283|consen 492 R---------LHNKKKKQ-GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--------SSQISA 552 (712)
T ss_pred e---------eccCcccc-Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--------Ccceee
Confidence 0 00001111 22 788888753 36888889999999999887777766543332 123567
Q ss_pred ccccCCCCcceeEeecccCCcCCCcceeecc
Q 009373 496 EMSSKGGRTDQCSVAAKKNPMNGNRRSVWHN 526 (536)
Q Consensus 496 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (536)
.|+.||.+|++++- +.. .++|++
T Consensus 553 sfs~Dgk~IVs~se---Ds~-----VYiW~~ 575 (712)
T KOG0283|consen 553 SFSSDGKHIVSASE---DSW-----VYIWKN 575 (712)
T ss_pred eEccCCCEEEEeec---Cce-----EEEEeC
Confidence 88899999998873 333 377765
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=6.4e-22 Score=179.64 Aligned_cols=265 Identities=19% Similarity=0.249 Sum_probs=190.7
Q ss_pred CCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecC
Q 009373 199 LGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD 272 (536)
Q Consensus 199 ~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d 272 (536)
|.+.|.... .+...+++++..+.|.|||.......... .....+...+.+|.+.-.+++| ....|++++.|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---cccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 444444332 45678888999999999998654311110 0133456688899998888999 45689999999
Q ss_pred CeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCC-CCEEEEEc
Q 009373 273 MTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGG 351 (536)
Q Consensus 273 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~ 351 (536)
++|++||+...... +. .-.+...+ .+|...|..++|++. ..+|++++
T Consensus 200 ~~i~lwdi~~~~~~------~~-------------------------~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 200 HTICLWDINAESKE------DK-------------------------VVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CcEEEEeccccccC------Cc-------------------------cccceEEe-ecCCcceehhhccccchhhheeec
Confidence 99999998653221 00 00112223 479999999999995 46888999
Q ss_pred CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEee
Q 009373 352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 428 (536)
Q Consensus 352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 428 (536)
.|+.+.|||+|++ .. ++.....+|.+.|+|++|+| ..||+||.|++|++||+++.
T Consensus 248 dd~~L~iwD~R~~-~~---~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL------------------ 305 (422)
T KOG0264|consen 248 DDGKLMIWDTRSN-TS---KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL------------------ 305 (422)
T ss_pred CCCeEEEEEcCCC-CC---CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc------------------
Confidence 9999999999963 11 55667789999999999987 68999999999999999986
Q ss_pred CCCeeeeccccccEEEEEecCC---EEEEecCCCeEEEEeCCchhhHHHHHHhhhc----ccchhHHHhhhhccccccCC
Q 009373 429 EPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIERRARALRG----IRLENRMRRRKLQTEMSSKG 501 (536)
Q Consensus 429 ~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g 501 (536)
..+...+.+|...|+.+.+++. .|||+|.|+.+.|||+..-.+......+..+ +......+..+....|+|+-
T Consensus 306 ~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 306 NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence 3355667899999999999886 8999999999999999864443322222222 22344556667888999988
Q ss_pred CCcceeEeecccCCcCCCcceeeccc
Q 009373 502 GRTDQCSVAAKKNPMNGNRRSVWHNK 527 (536)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (536)
....+ |+ +..|.+ .||...
T Consensus 386 PW~I~-Sv-aeDN~L-----qIW~~s 404 (422)
T KOG0264|consen 386 PWTIA-SV-AEDNIL-----QIWQMA 404 (422)
T ss_pred CeEEE-Ee-cCCceE-----EEeecc
Confidence 87663 33 333555 666555
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.4e-20 Score=161.36 Aligned_cols=279 Identities=20% Similarity=0.307 Sum_probs=196.7
Q ss_pred eeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCCce----------ee-----eeCCCCceEEEEe---cCCCE
Q 009373 152 DVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS----------IA-----SSKPLGCTIRAVA---ADKKL 212 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~----------~~-----~~~~~~~~v~~~~---~~~~~ 212 (536)
...+.|.+.|.++...+ .|+++++|+.||.|.+||+++... +. .-.+|.-.|.... .|...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 45567999999999988 589999999999999999976531 00 1123444555544 57789
Q ss_pred EEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-----eCCEEEEEecCCeEEEEeCCCceEeE
Q 009373 213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLK 287 (536)
Q Consensus 213 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~i~iwd~~~~~~~~ 287 (536)
+.+++.|.+++|||..+-. ... .....+.|.+-++ ..-++++|..|-.|++-|+.+|.+.+
T Consensus 117 FtssSFDhtlKVWDtnTlQ-------------~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQ-------------EAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred eecccccceEEEeecccce-------------eeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 9999999999999997753 111 1123445555444 34578889999999999999999999
Q ss_pred eee-ccccEEEEe--ecCCE-EEEec-CCcEEEEeCCCC-cEEEEE-------------ccccccceEEEEEeCCCCEEE
Q 009373 288 VLR-HSDWVYGLA--PHDTT-VASTS-GSDVYIWDTNSG-CLLTVV-------------NGAHVGNTKSLARSHTGDFLF 348 (536)
Q Consensus 288 ~~~-~~~~v~~~~--~~~~~-l~~~~-d~~i~i~d~~~~-~~~~~~-------------~~~~~~~i~~l~~~~~~~~l~ 348 (536)
++. |.+.|.++. |...+ |++|+ ||.|++||++.. .+...+ ...|.+.++.++|..++.+++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence 998 999999998 55554 55666 999999999864 222222 246888999999999999999
Q ss_pred EEcCCCcEEEEEcccCccccccceeeeccCCCCC----eEEEE-EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCcee
Q 009373 349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP----VNSLA-FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 423 (536)
Q Consensus 349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~l~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 423 (536)
+++.|..+++|+...+.... ..... ..|... +. +. .+...++---.++.+.++++-.+
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl--~~~g~-~~~n~~~~~~~~-~~~~~s~vfv~~p~~~~lall~~~sg------------- 325 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTL--REFGP-IIHNQTTSFAVH-IQSMDSDVFVLFPNDGSLALLNLLEG------------- 325 (397)
T ss_pred hccCccceEEeecccCcccc--ccccc-ccccccccceEE-EeecccceEEEEecCCeEEEEEccCc-------------
Confidence 99999999999998874211 11000 011111 11 11 12233443444577777777653
Q ss_pred eEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCC
Q 009373 424 RVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~ 467 (536)
...+.+.+|...+.+..+.++ ...+|+.|+.|..|-..
T Consensus 326 ------s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 326 ------SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ------eEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 333455666666777777776 78999999999999874
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.7e-20 Score=172.07 Aligned_cols=312 Identities=15% Similarity=0.155 Sum_probs=225.4
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee---CC-CCceEEEEec-CCCEEEEEeCCCcEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS---KP-LGCTIRAVAA-DKKLLVAGGTDGFIHC 224 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~~-~~~~v~~~~~-~~~~l~sg~~dg~i~v 224 (536)
.....+.-++.|....|+|.+..|+.....+.+..|+.+.+...++. .. ....|+|+.+ .+.-+++|..+|.|.|
T Consensus 192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~I 271 (626)
T KOG2106|consen 192 KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILI 271 (626)
T ss_pred ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEE
Confidence 34455556788999999997765555555789999999988655543 22 2356777773 3446889999999999
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEee
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAP 300 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~ 300 (536)
|+..+.. .......|.+.|.+++. ....|++|+.|+.|..|| ..-+.++..+ ..+.|..+.+
T Consensus 272 w~~~~~~-------------~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 272 WSKGTNR-------------ISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred EeCCCce-------------EEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEec
Confidence 9985542 33334489999999999 666778899999999999 3333333333 6678899884
Q ss_pred cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373 301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379 (536)
Q Consensus 301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 379 (536)
.+.-++.|. .+.|..=.++++-.+..+ +|..+...++.+|+.+.++|++.|+.+++|+ .. ++..+ .--
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~------k~~wt-~~~ 406 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH------KLEWT-KII 406 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc--CC------ceeEE-EEe
Confidence 433354444 677776677777666665 6999999999999999999999999999999 22 12222 123
Q ss_pred CCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCC
Q 009373 380 TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE 458 (536)
Q Consensus 380 ~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D 458 (536)
..++.|+.|+| ..++.|...|...|.|.++..... .+ ..+...++..++++|.+||.|+.|
T Consensus 407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-----------------~~-~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT-----------------IH-TDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred cCceeEeeccCcceEEEeeccceEEEEecccceeEE-----------------EE-ecCCceEEEEEcCCCCEEEEecCC
Confidence 56889999987 699999999999999998721110 00 113335667777888899999999
Q ss_pred CeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373 459 GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK 512 (536)
Q Consensus 459 g~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 512 (536)
+.|++|.++.+.....+....++ ..++.++||+|+..+.+-+.+..
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~g--------s~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSG--------SPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecC--------ceeEEeeecCCCceEEeccCceE
Confidence 99999999976544333222222 34678999999999998665543
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3e-20 Score=176.61 Aligned_cols=266 Identities=14% Similarity=0.052 Sum_probs=181.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEE-EEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 247 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 247 (536)
+++++|++.|+.|++||+.+++.+..+..+.. ...++++++..+ ++++.++.|++||..++. ...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------------~~~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------------VIG 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc-------------EEE
Confidence 35788999999999999999988888765443 335677888876 567789999999987653 222
Q ss_pred EeeCCccCEEEEEE--eCCEEE-EEecCCeEEEEeCCCceEeEeeeccccEEEE--eecCCEEEEec-C-CcEEEEeCCC
Q 009373 248 RLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS-G-SDVYIWDTNS 320 (536)
Q Consensus 248 ~~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d-~~i~i~d~~~ 320 (536)
.+..+.. +..+++ +++.++ +++.|+.+++||+.+.+.+..+.....+.++ .|++.+++++. + ..+.+||..+
T Consensus 68 ~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 68 TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 2333332 455666 566665 4567899999999998887777644444444 48899998887 4 3577889998
Q ss_pred CcEEEEEccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceeeeccCC-------CCCeEEEEEcC--
Q 009373 321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPH-------TGPVNSLAFEF-- 390 (536)
Q Consensus 321 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~-- 390 (536)
++...... ....+..++|+|++++|+++ ..++.|++||+.++. .+..+..+ ......++|++
T Consensus 147 ~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 147 YEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK------VIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred CeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce------eeeeeeecccccccccCCccceEECCCC
Confidence 87766553 33456789999999988654 469999999998873 22222211 11234677875
Q ss_pred CeEE-EEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEe-cCCCeEEEEeCCc
Q 009373 391 PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG-GEEGIVRIWNFSQ 468 (536)
Q Consensus 391 ~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-~~Dg~i~vW~~~~ 468 (536)
++++ +.+.++.|.+||+++..... ....++.....++++++++|+++ +.+|.|++||+.+
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYEVLD------------------YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEE------------------EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4544 44557789999997642110 01122323334455566687765 5799999999999
Q ss_pred hhhHHHH
Q 009373 469 AFEIERR 475 (536)
Q Consensus 469 ~~~~~~~ 475 (536)
++.+.+.
T Consensus 281 ~~~~~~~ 287 (300)
T TIGR03866 281 LKVIKSI 287 (300)
T ss_pred CcEEEEE
Confidence 8766544
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.7e-20 Score=178.50 Aligned_cols=304 Identities=22% Similarity=0.353 Sum_probs=225.2
Q ss_pred ceeeeeCccccEEEEEEecCCC---EEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAK---LLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~---~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~v 224 (536)
.+.++.||..+|+|+.|.|+.. ++++|+.|+.|.+|.++.. .++.++++|...+.|+..........+.|+++.+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV 125 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence 5678999999999999999877 8999999999999999843 4567778888899988866555555589999999
Q ss_pred EEcccCccc-----------------------------------eecccC--cccccceEEeeCCccCEEEEEE-----e
Q 009373 225 WRAVEVLPH-----------------------------------LFDISG--SEKQNTQFRLWEHEGPITSLAL-----D 262 (536)
Q Consensus 225 wd~~~~~~~-----------------------------------~~~~~~--~~~~~~~~~~~~h~~~v~~l~~-----~ 262 (536)
||.+..+.. ...+.+ ..+......+.||.+.|.+++| +
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~ 205 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD 205 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence 999543310 000111 2233566778899999999999 2
Q ss_pred CCEEEEEecCCeEEEEeCCCce---------------------Ee---E-------ee-eccccEEEEe--ecCCEEEEe
Q 009373 263 LTRIYSGSWDMTVRVWDRALLK---------------------CL---K-------VL-RHSDWVYGLA--PHDTTVAST 308 (536)
Q Consensus 263 ~~~l~s~s~dg~i~iwd~~~~~---------------------~~---~-------~~-~~~~~v~~~~--~~~~~l~~~ 308 (536)
.-+|+++|.|..||||.+.-+. .. . .+ .|.++|+++. |.+..|.++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence 3478999999999999753211 11 1 01 2899999998 666556666
Q ss_pred c-CCcEEEEeCCCC--cEEEEEc----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 309 S-GSDVYIWDTNSG--CLLTVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 309 ~-d~~i~i~d~~~~--~~~~~~~----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
+ |.++.+|...+. --+.... .+..+......|+|+++.+++-+.-|..++|...+. ..........||..
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---TFWTQEPVISGHVD 362 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---cceeeccccccccc
Confidence 6 999999987654 2222221 234556889999999999999999999999983332 23344556789999
Q ss_pred CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCC
Q 009373 382 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG 459 (536)
Q Consensus 382 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg 459 (536)
.|..++|+| .+|++.|.|.+-+++-.-. +. ..+.++..|+ .|||.....++-..+-.+++|.+..
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg----------~q-~~wHEiaRPQ--iHGyDl~c~~~vn~~~~FVSgAdEK 429 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWG----------RQ-QEWHEIARPQ--IHGYDLTCLSFVNEDLQFVSGADEK 429 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeecccc----------cc-cceeeecccc--cccccceeeehccCCceeeecccce
Confidence 999999985 8999999999999986441 11 1245555554 5787777666665555999999999
Q ss_pred eEEEEeCCch
Q 009373 460 IVRIWNFSQA 469 (536)
Q Consensus 460 ~i~vW~~~~~ 469 (536)
.+|+|+++..
T Consensus 430 VlRvF~aPk~ 439 (764)
T KOG1063|consen 430 VLRVFEAPKS 439 (764)
T ss_pred eeeeecCcHH
Confidence 9999998754
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.3e-20 Score=173.97 Aligned_cols=278 Identities=18% Similarity=0.218 Sum_probs=208.1
Q ss_pred eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeeeCCC-CceEEEEe-cCCCEEEEEeCCCcEEEEEccc
Q 009373 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPL-GCTIRAVA-ADKKLLVAGGTDGFIHCWRAVE 229 (536)
Q Consensus 153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~-~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~ 229 (536)
.+.--..+|.+++|+.+.+.||.+=.||.|-||++..+=. ...++++ ...|-+++ .++..|.+.+.+|.|.-||+.+
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEeccc
Confidence 3444567899999999999999999999999999987633 3344443 34555555 3588899999999999999977
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe--ecC
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHD 302 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~--~~~ 302 (536)
++ +...+....++|.+++. .++.++.|+.||.+..++...++...... ..+.|.+++ +++
T Consensus 100 lk-------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 100 LK-------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred Cc-------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 53 56667777899999999 55789999999988888887777655433 668999998 667
Q ss_pred CEEEEec-CCcEEEEeCCCCcEEEEEc-------cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373 303 TTVASTS-GSDVYIWDTNSGCLLTVVN-------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 374 (536)
Q Consensus 303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 374 (536)
..+++|+ ||.|++||..++..+.... .+...-|.++.|-.+ ..|++|..-|+|.+||...+ ..+.
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g------TLiq 239 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG------TLIQ 239 (691)
T ss_pred cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc------chhh
Confidence 7788888 9999999999998776221 112335778888755 46899999999999999998 7788
Q ss_pred eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEE
Q 009373 375 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI 452 (536)
Q Consensus 375 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 452 (536)
.+..|.+.|.+|+..+ +++++++.|+.|..+...+....+... ..+ ..|...+-+++.-++.+
T Consensus 240 S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~-------------~~r--~~h~hdvrs~av~~~~l 304 (691)
T KOG2048|consen 240 SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN-------------SRR--DLHAHDVRSMAVIENAL 304 (691)
T ss_pred hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee-------------ccc--cCCcccceeeeeecceE
Confidence 8899999999999975 799999999999999887653322111 111 22333344444445566
Q ss_pred EEecCCCeEEEEe
Q 009373 453 VCGGEEGIVRIWN 465 (536)
Q Consensus 453 ~sg~~Dg~i~vW~ 465 (536)
++||.|+++.+=.
T Consensus 305 ~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 305 ISGGRDFTLAICS 317 (691)
T ss_pred EecceeeEEEEcc
Confidence 6666666655533
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.3e-21 Score=182.65 Aligned_cols=256 Identities=16% Similarity=0.182 Sum_probs=185.6
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee--eCCCCceEEEEe---cCCCEEEEEeCCCcEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA---ADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~sg~~dg~i~v 224 (536)
.......|...|..+.|.|....|++++.|.++++||+++++.... +.+|.+.+-+++ .+...|++|+.||.|.|
T Consensus 92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 3567778999999999999777999999999999999999988776 889998886555 46779999999999999
Q ss_pred EEcccCcccee--------ccc-C-----cccccceEEeeCCcc----CEEEEEE-eCCEEEEEec-CCeEEEEeCCCce
Q 009373 225 WRAVEVLPHLF--------DIS-G-----SEKQNTQFRLWEHEG----PITSLAL-DLTRIYSGSW-DMTVRVWDRALLK 284 (536)
Q Consensus 225 wd~~~~~~~~~--------~~~-~-----~~~~~~~~~~~~h~~----~v~~l~~-~~~~l~s~s~-dg~i~iwd~~~~~ 284 (536)
||++......+ ... + ............|.. .|+.+.| |...|++++. |+.|+|||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 99976542111 000 0 011112222233443 3555677 8899999888 9999999998765
Q ss_pred EeEeee---------c---cccEEEEe--ecCCEE-EEecCCcEEEEeCCCCc--EEEEEcccccc--ceEEEEEeCCCC
Q 009373 285 CLKVLR---------H---SDWVYGLA--PHDTTV-ASTSGSDVYIWDTNSGC--LLTVVNGAHVG--NTKSLARSHTGD 345 (536)
Q Consensus 285 ~~~~~~---------~---~~~v~~~~--~~~~~l-~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--~i~~l~~~~~~~ 345 (536)
...... + .-.+.++. ..|.++ |.|.|+.|++||+.+-. ++..+. ++.. .-..-..+|++.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDC 330 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCc
Confidence 543322 2 12334444 444554 55569999999998743 233332 2211 112234689999
Q ss_pred EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373 346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 411 (536)
++++|+.|...++|.+.+.. .....+.+|.-.|++++|.| .-+++++.|..+++|++..+.
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e-----~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPE-----APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEeccCCCcceeeeeecCcc-----CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 99999999999999998875 45566789999999999976 568888999999999996643
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.7e-21 Score=171.24 Aligned_cols=264 Identities=19% Similarity=0.273 Sum_probs=190.5
Q ss_pred CCCCceEEEEe----cCCCEEEEEeCCCcEEEEEcccCccceecc---cCcccccceEEeeCCccCEEEEEEeC---CEE
Q 009373 197 KPLGCTIRAVA----ADKKLLVAGGTDGFIHCWRAVEVLPHLFDI---SGSEKQNTQFRLWEHEGPITSLALDL---TRI 266 (536)
Q Consensus 197 ~~~~~~v~~~~----~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l 266 (536)
.+|.+.+..+. .+..+.++=+..|.|+||++......+-+. .......+++++.+|.+.=..++|.+ ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 34444444432 345577777889999999986543221111 11134568889999999999999944 668
Q ss_pred EEEecCCeEEEEeCCCceEeEe----eeccccEEEEee---cCCEEEEec-CCcEEEEeCCCCc-EEEEEccccccceEE
Q 009373 267 YSGSWDMTVRVWDRALLKCLKV----LRHSDWVYGLAP---HDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKS 337 (536)
Q Consensus 267 ~s~s~dg~i~iwd~~~~~~~~~----~~~~~~v~~~~~---~~~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~ 337 (536)
++|..-+.|++|...++.-..- ..|...|-.++. ....|++|+ |++|+|||++.+. ....+..+|.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 8999999999999887653321 228888888873 567888888 9999999999982 222222479999999
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccC
Q 009373 338 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSG 414 (536)
Q Consensus 338 l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~ 414 (536)
+.|+....+|++|+.||+++|||++.-+.. .++..+.-|..+|++|.|+| ..|++++.|..|.+||+.......
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 999998889999999999999999987543 68889999999999999997 689999999999999997532211
Q ss_pred CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeEEEEe
Q 009373 415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWN 465 (536)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~vW~ 465 (536)
... ......+..+.+...+.|.....+-.+++... ++++.+.|| +.||.
T Consensus 385 e~~-~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 385 EID-QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhc-cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 100 01111133445555566655566667777654 999999999 55554
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-20 Score=176.84 Aligned_cols=327 Identities=20% Similarity=0.260 Sum_probs=233.3
Q ss_pred cceeeeeCcc-ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009373 149 YSIDVLYGHT-EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 149 ~~~~~l~~h~-~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw 225 (536)
+...+++||. ..|-+++|++ +..|.+.+.+|.|.-||+.+++....+...++++++++ |.+..++.|+.||.+...
T Consensus 59 ~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~ 137 (691)
T KOG2048|consen 59 FLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDF 137 (691)
T ss_pred eeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEE
Confidence 5567777765 5799999994 56688889999999999999999999999999888776 888999999999977777
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---------cccc
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---------HSDW 294 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~ 294 (536)
+...+. ......+....+.|.+++| ++..+++|+.||.|++||..++..+.... ...-
T Consensus 138 s~~p~~-----------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i 206 (691)
T KOG2048|consen 138 SIGPDK-----------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI 206 (691)
T ss_pred ecCCce-----------EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE
Confidence 765543 2233445556789999999 45678999999999999999988877332 1223
Q ss_pred EEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373 295 VYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 372 (536)
Q Consensus 295 v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 372 (536)
|.++. -....+++|. .|+|.+||...+.++..+. .|...|.+++..++++++++++.|+.|.-|...+... +...
T Consensus 207 VWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~ 283 (691)
T KOG2048|consen 207 VWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--EWVI 283 (691)
T ss_pred EEEEEEeecCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--ceee
Confidence 45555 4566677776 7999999999999999886 5999999999999999999999999999998877643 2344
Q ss_pred eeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEE
Q 009373 373 VATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI 452 (536)
Q Consensus 373 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 452 (536)
......|...|.+++..+..+++|+.|..+.+--.+........ +.....+ ..+..+++....+
T Consensus 284 ~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~---------------~~~~~p~-~~~v~~a~~~~L~ 347 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHR---------------QKNLFPA-SDRVSVAPENRLL 347 (691)
T ss_pred eccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhh---------------ccccccc-cceeecCccceEE
Confidence 55566899999999999999999999999988766542111000 0011111 1122333332233
Q ss_pred EEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeE
Q 009373 453 VCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS 508 (536)
Q Consensus 453 ~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 508 (536)
+.- .+..+.+|.+.+........ ...-..+.-...+...+.+.||+|..|+...
T Consensus 348 ~~w-~~h~v~lwrlGS~~~~g~~~-~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st 401 (691)
T KOG2048|consen 348 VLW-KAHGVDLWRLGSVILQGEYN-YIHLLKLFTKEKENISCAAISPDGNLIAIST 401 (691)
T ss_pred EEe-ccccccceeccCcccccccC-hhhheeeecCCccceeeeccCCCCCEEEEee
Confidence 322 24456677766542221100 0001111222345577889999999999854
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=163.36 Aligned_cols=288 Identities=18% Similarity=0.161 Sum_probs=195.2
Q ss_pred eeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC---CEEEEE
Q 009373 195 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSG 269 (536)
Q Consensus 195 ~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~ 269 (536)
.+.+|...|.++ +.||+.|++++.|++|++|+++.-.. .. ...+ ...-.-+.-+.+.|.+ ..++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~e---Hr~~-R~nve~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KE---HRCI-RQNVEYDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hh---hhHh-hccccCCCceEEEECCCcceEEEEE
Confidence 457787777655 58999999999999999999865321 00 0010 0111122455667732 356666
Q ss_pred ecCCeEEEEeCCCc---eEeEe--------ee--ccccEEEE--eecCCEEEEec-CCcEEEEeCCCCcEEEEEcccccc
Q 009373 270 SWDMTVRVWDRALL---KCLKV--------LR--HSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG 333 (536)
Q Consensus 270 s~dg~i~iwd~~~~---~~~~~--------~~--~~~~v~~~--~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~ 333 (536)
-...++++|.+... ..... +. |...+..+ +.++.++++++ |.+|.+|+++ |+.+..+.. ...
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~ 229 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQS 229 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-ccc
Confidence 67778999976422 11111 11 34444443 46788999998 8999999999 888888853 556
Q ss_pred ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc--cccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDC--TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
.-+..+.+|+|+++++++-.--|++|.+--.+ ..++...+..+.||.+.|.+++|++ ..+++.|.||+++|||..-
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 66778899999999999998899999974332 2344566788999999999999987 6999999999999999863
Q ss_pred ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHH
Q 009373 410 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMR 489 (536)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
.-.... ....+.+...+. ...|....-++++|+++.|+... ...++++..++|+...+......+
T Consensus 310 rY~~~q-----Dpk~Lk~g~~pl-~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~-------- 374 (420)
T KOG2096|consen 310 RYEAGQ-----DPKILKEGSAPL-HAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHST-------- 374 (420)
T ss_pred eEecCC-----CchHhhcCCcch-hhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcC--------
Confidence 211100 000001111111 11222333567778888666544 456999999999888877776554
Q ss_pred hhhhccccccCCCCcceeEe
Q 009373 490 RRKLQTEMSSKGGRTDQCSV 509 (536)
Q Consensus 490 ~~~~~~~~~~~g~~~~~~~~ 509 (536)
.+.++.|+++|+.+++|.-
T Consensus 375 -~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 375 -TISSISYSSDGKYIATCGD 393 (420)
T ss_pred -ceeeEEecCCCcEEeeecc
Confidence 3679999999999999843
No 135
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=3.3e-21 Score=177.14 Aligned_cols=257 Identities=18% Similarity=0.208 Sum_probs=177.1
Q ss_pred eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE
Q 009373 193 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 268 (536)
Q Consensus 193 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 268 (536)
-..+.+|...|.++. |.|..|++|+.|.+|++||+....... .............|.++.| .++.|++
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~--------~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM--------RSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc--------hhhhccCcccccccceeeecCCCCeEEE
Confidence 344566777777665 889999999999999999996543211 0011111234457888888 7888988
Q ss_pred EecCCeEEEEeCCCceEeEeee-------------ccccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCc-EEEEEc--
Q 009373 269 GSWDMTVRVWDRALLKCLKVLR-------------HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGC-LLTVVN-- 328 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~-------------~~~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~-~~~~~~-- 328 (536)
.+.....+++|....+...... |...++|.+ |. ...+++++ ||++++||+...+ .+..+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 8888999999976554443322 555556555 32 33455555 9999999998754 333333
Q ss_pred --cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC--CeEEEEEcC--CeEEEEeCCCcE
Q 009373 329 --GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFEF--PWLVSAAGDGKL 402 (536)
Q Consensus 329 --~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i 402 (536)
.+..-.++.++|+|+|++||+|+.||.|.+|+....... .....-.+|.. .|+||.|++ ++|++-+.|+++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~---p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR---PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc---cceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 233447899999999999999999999999998655321 22334457877 999999974 899999999999
Q ss_pred EEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecC------CCeEEEEeCCchhhHHH
Q 009373 403 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFSQAFEIER 474 (536)
Q Consensus 403 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~i~vW~~~~~~~~~~ 474 (536)
++||++...+......+ ........-.+++|+..+|+||.. .|++.+||-.+-..+.+
T Consensus 389 KvWDLrq~kkpL~~~tg--------------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTG--------------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred eeeeccccccchhhhcC--------------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999986544321111 112223344566677778888764 67799999877655543
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.8e-23 Score=195.47 Aligned_cols=217 Identities=24% Similarity=0.390 Sum_probs=182.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373 171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 248 (536)
Q Consensus 171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 248 (536)
.+++.+..+-.+++|+... +..|...+-++. ..++.+++|+.|-.+.+|.+... .....
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-------------~~i~S 65 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-------------NAITS 65 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC-------------chhhe
Confidence 3445555566677888653 234555554544 56789999999999999987443 35556
Q ss_pred eeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCc
Q 009373 249 LWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC 322 (536)
Q Consensus 249 ~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~ 322 (536)
+.+|.++|.++.| ....|++|+.+|+|++||++.++.++++. |...+.++. |.+.++++++ |+.+.+||.+...
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 8999999999999 45678999999999999999999888887 888888877 8888998888 9999999999888
Q ss_pred EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC
Q 009373 323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG 400 (536)
Q Consensus 323 ~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg 400 (536)
+...+. +|...+..+.|+|+|.+++.|++|..++|||...+ .....|..|.+.|.++.|+| -.+++||.|+
T Consensus 146 c~~~~~-s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 146 CSHTYK-SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred ceeeec-CCcceeEEEeecCCCceeeccCCcceeeeeccccc------ccccccccccccccccccCchhhhhccCCCCc
Confidence 888886 59999999999999999999999999999999988 78889999999999999998 4788999999
Q ss_pred cEEEEECCccccc
Q 009373 401 KLSLIDVRKLLRS 413 (536)
Q Consensus 401 ~i~vwd~~~~~~~ 413 (536)
+|++||+++.+..
T Consensus 219 tv~f~dletfe~I 231 (825)
T KOG0267|consen 219 TVRFWDLETFEVI 231 (825)
T ss_pred eeeeeccceeEEe
Confidence 9999999985433
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-20 Score=182.72 Aligned_cols=265 Identities=14% Similarity=0.133 Sum_probs=201.9
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeC
Q 009373 201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR 280 (536)
Q Consensus 201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~ 280 (536)
-+-+++.++|..|++++.||.|++|+..... .....+..+...|.+++...++|++|+.+++|.+|.+
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDE------------EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcc------------cCCchhhccCceeEEEeecccceEEeeccceEEEeeC
Confidence 3556777999999999999999999875431 1111222278889999999999999999999999999
Q ss_pred CCceEe---EeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373 281 ALLKCL---KVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356 (536)
Q Consensus 281 ~~~~~~---~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i 356 (536)
.+++.- ..+..+..+.++.-+|+++++|+ |-.|++.++.+......+. +|.++|.++.|+|.+++||+.+-||.|
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceE
Confidence 887654 34445556666668889999999 7889999999998888886 799999999999999999999999999
Q ss_pred EEEEcccCccccccceeeeccC-C-CCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373 357 HMYEIINDCTEANVLLVATWIP-H-TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ 432 (536)
Q Consensus 357 ~iwd~~~~~~~~~~~~~~~~~~-h-~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (536)
+|||+.++.....+..+..-.. - ...+..++|+| ..++..+.|+.|++|+..+....+.....
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------- 229 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------- 229 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-------------
Confidence 9999998843222111111111 1 45667889998 58888899999999999887555433221
Q ss_pred eeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCccee
Q 009373 433 RMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC 507 (536)
Q Consensus 433 ~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 507 (536)
.......++.++|.|.|||+++.||.|.|||+++- ++ ....+.+.+++|.|++..+...
T Consensus 230 --~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~---~~-----------~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 230 --LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH---ER-----------HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred --ccccceEEEEEcCCCcEEeeeccCCcEEEEecccc---hh-----------ccccceeEEEecCCCCCeeEEE
Confidence 11112456677778889999999999999999981 11 1234567899999999988764
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.5e-22 Score=190.30 Aligned_cols=230 Identities=18% Similarity=0.264 Sum_probs=185.7
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCC---CceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccce
Q 009373 162 LTVFVLA-SAKLLFTSGYDSIVRMWHLED---GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHL 234 (536)
Q Consensus 162 ~~v~~~~-~~~~l~sgs~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~ 234 (536)
..|.|.. +.++|||++..|.|.+||+.. .+.+..+..|.-.+.++. ....+|++|+.||+|++||++...
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--- 167 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--- 167 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc---
Confidence 3455553 467999999999999999987 556667788888887766 467899999999999999997653
Q ss_pred ecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce-EeEeee-ccccEEEEe--ecCCEEEE
Q 009373 235 FDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLA--PHDTTVAS 307 (536)
Q Consensus 235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~--~~~~~l~~ 307 (536)
...++.+....|.++.| .++.|+++.+.|.+.+||++... +...+. |.++|.|+. |++.+||+
T Consensus 168 ----------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lAT 237 (839)
T KOG0269|consen 168 ----------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLAT 237 (839)
T ss_pred ----------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeee
Confidence 44556677889999999 66899999999999999998654 444454 999999998 88999999
Q ss_pred ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEc--CCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373 308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPV 383 (536)
Q Consensus 308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 383 (536)
|+ |+.|+|||..+++......-....++.+++|-|... .|++++ .|-.|+|||++-+- .+..++..|...+
T Consensus 238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----IP~~t~~eH~~~v 312 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----IPYATFLEHTDSV 312 (839)
T ss_pred cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc-----ccceeeeccCccc
Confidence 99 999999999876543322223567899999999875 466655 37789999998773 6788899999999
Q ss_pred EEEEEcC---CeEEEEeCCCcEEEEECCc
Q 009373 384 NSLAFEF---PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 384 ~~l~~~~---~~l~s~s~dg~i~vwd~~~ 409 (536)
+.++|.. ..+.+++.||+|..-.+++
T Consensus 313 t~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 313 TGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cceeccCCCceeeEeecCccHHHHhhhhc
Confidence 9999953 7899999999987766554
No 139
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.9e-21 Score=162.37 Aligned_cols=236 Identities=19% Similarity=0.175 Sum_probs=176.0
Q ss_pred CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-e---CCEEEEEec
Q 009373 198 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D---LTRIYSGSW 271 (536)
Q Consensus 198 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~---~~~l~s~s~ 271 (536)
.|...|.... .-|..|+|++.|++|+|+..+... ....+.++.||.++|..++| + |+.|++++.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY 78 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY 78 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----------CceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence 4555554433 568999999999999999987652 23578889999999999999 4 578999999
Q ss_pred CCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC--CEEEE
Q 009373 272 DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG--DFLFT 349 (536)
Q Consensus 272 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~t 349 (536)
||.|.||.-.+++-.+.. .. ..|...|++++|.|.+ -.|++
T Consensus 79 DgkVIiWke~~g~w~k~~------------------------------------e~-~~h~~SVNsV~wapheygl~Lac 121 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAY------------------------------------EH-AAHSASVNSVAWAPHEYGLLLAC 121 (299)
T ss_pred CceEEEEecCCCchhhhh------------------------------------hh-hhhcccceeecccccccceEEEE
Confidence 999999997766322211 11 2589999999999864 58999
Q ss_pred EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC----------------CeEEEEeCCCcEEEEECCccccc
Q 009373 350 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----------------PWLVSAAGDGKLSLIDVRKLLRS 413 (536)
Q Consensus 350 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----------------~~l~s~s~dg~i~vwd~~~~~~~ 413 (536)
++.||.|.|.+.+.... .........|.-.|++++|.| ..|++|+.|..|+||+..+..
T Consensus 122 asSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-- 196 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-- 196 (299)
T ss_pred eeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence 99999999999987621 123344568999999999964 369999999999999998741
Q ss_pred CCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC------EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhH
Q 009373 414 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD------RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENR 487 (536)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~ 487 (536)
-...+++.+|...|..+++.|. +||+++.||+|.||......+..+. ..+. .
T Consensus 197 ---------------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~-tll~------~ 254 (299)
T KOG1332|consen 197 ---------------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK-TLLE------E 254 (299)
T ss_pred ---------------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc-cccc------c
Confidence 1222347889988888776654 8999999999999998843222221 1111 1
Q ss_pred HHhhhhccccccCCCCccee
Q 009373 488 MRRRKLQTEMSSKGGRTDQC 507 (536)
Q Consensus 488 ~~~~~~~~~~~~~g~~~~~~ 507 (536)
.....-.+.||+.|..|++.
T Consensus 255 f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred CCcceEEEEEeccccEEEEe
Confidence 23345678999999998864
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=3.3e-21 Score=176.52 Aligned_cols=229 Identities=20% Similarity=0.301 Sum_probs=189.5
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--eeCC--CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009373 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA--SSKP--LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP 232 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~--~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 232 (536)
...-|+++.+.|||+.|++|++-.++.|||+....... .+.. ..+..++++||.+..+++..||.|.|||+..
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn--- 540 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN--- 540 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc---
Confidence 34678899999999999999999999999997654322 2222 3445566679999999999999999999965
Q ss_pred ceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEe
Q 009373 233 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAST 308 (536)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~ 308 (536)
...+..+.||++.+.||.+ +|..|.+|+-|.+|+.||+++++.+........|.++. |.+..++.|
T Consensus 541 ----------q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 541 ----------QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred ----------ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence 4578899999999999999 78999999999999999999999988888888999887 999999999
Q ss_pred c-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEE
Q 009373 309 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA 387 (536)
Q Consensus 309 ~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 387 (536)
- ++.+-|......+... + .-|.+-|.++.|.+.|+++++.+.|..+..|....+. .+... ...++|.+..
T Consensus 611 Mens~vevlh~skp~kyq-l-hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa------siFqs-kE~SsVlsCD 681 (705)
T KOG0639|consen 611 MENSNVEVLHTSKPEKYQ-L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA------SIFQS-KESSSVLSCD 681 (705)
T ss_pred cccCcEEEEecCCcccee-e-cccccEEEEEEecccCceeeecCchhhhhhccCcccc------ceeec-cccCcceeee
Confidence 9 7888887766544333 3 2499999999999999999999999999999987772 33222 2356777777
Q ss_pred Ec--CCeEEEEeCCCcEEEEEC
Q 009373 388 FE--FPWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 388 ~~--~~~l~s~s~dg~i~vwd~ 407 (536)
.+ ..+++||+.|....||.+
T Consensus 682 IS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 682 ISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eccCceEEEecCCCcceEEEEE
Confidence 65 589999999999988875
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=8e-20 Score=173.94 Aligned_cols=286 Identities=18% Similarity=0.224 Sum_probs=214.0
Q ss_pred eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee----eee---CCCCceEEE--EecCCCEEEEEeCCCcEE
Q 009373 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI----ASS---KPLGCTIRA--VAADKKLLVAGGTDGFIH 223 (536)
Q Consensus 153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~----~~~---~~~~~~v~~--~~~~~~~l~sg~~dg~i~ 223 (536)
.+.||.+-|+++.|+|.+..|+++|.|.++.+|...+..-+ ..+ .+.....+. +.++++.+++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 44599999999999999999999999999999998655221 112 222222333 458889999999999999
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCc-eEeEeee----ccccEE
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALL-KCLKVLR----HSDWVY 296 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~----~~~~v~ 296 (536)
+|..... ..........||.+.|++++|+ |++|++.|.|.+-|+|-.-.. ..-+.+. |.-.++
T Consensus 342 lWkt~d~----------~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 342 LWKTKDK----------TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred EEeccCc----------cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccce
Confidence 9983222 1233445567999999999994 899999999999999865411 1122222 777888
Q ss_pred EEe--ecCCEEEEecC-CcEEEEeCCC-------------------------------------------CcE----EEE
Q 009373 297 GLA--PHDTTVASTSG-SDVYIWDTNS-------------------------------------------GCL----LTV 326 (536)
Q Consensus 297 ~~~--~~~~~l~~~~d-~~i~i~d~~~-------------------------------------------~~~----~~~ 326 (536)
|++ +....+++|.| .-+|+|+... |.. ..+
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 888 33566677774 6678887631 000 000
Q ss_pred E----------------------------ccccccceEEEEEeCCCCEEEEEcCCC-----cEEEEEcccCcccccccee
Q 009373 327 V----------------------------NGAHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 327 ~----------------------------~~~~~~~i~~l~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~ 373 (536)
. ..||...|++++.+|+|+++|+++... .|++|+..+- ..+
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W------~~~ 565 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW------LQV 565 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch------hhh
Confidence 0 027888999999999999999998754 4999998887 567
Q ss_pred eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-
Q 009373 374 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD- 450 (536)
Q Consensus 374 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 450 (536)
..+.+|.-.|+.|+|+| .+|++.|.|.++.+|......... ........|...|++.+++++
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e---------------~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE---------------FRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh---------------hhhccccccceEEEEcccCccc
Confidence 78899999999999987 799999999999999986532111 112235778888888888776
Q ss_pred -EEEEecCCCeEEEEeCCch
Q 009373 451 -RIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 451 -~l~sg~~Dg~i~vW~~~~~ 469 (536)
+++|+|.|.+|++|.....
T Consensus 631 ~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ceeEEecCCceEEEEeccCc
Confidence 8999999999999999987
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.5e-20 Score=158.43 Aligned_cols=280 Identities=15% Similarity=0.131 Sum_probs=196.6
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 238 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 238 (536)
-.|+.|++.|.+||+|..||.|.|||+.|...-+.+.+|.-+|.+++ ++|+.|+|+|.|..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs------- 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS------- 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-------
Confidence 67999999999999999999999999999988888888887776655 999999999999999999997763
Q ss_pred CcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee--cc---ccEE---EEeecCCEEEE
Q 009373 239 GSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HS---DWVY---GLAPHDTTVAS 307 (536)
Q Consensus 239 ~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~---~~v~---~~~~~~~~l~~ 307 (536)
+...+ ...++|....| +.+..++.-.+..-.+-++..++. ..+. .. +.+- .+.+.|+++++
T Consensus 99 ------~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 99 ------PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred ------ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEE
Confidence 22222 34678888888 334555544444455555543221 1111 11 1111 24478999999
Q ss_pred ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc---cccccceeeeccC--CCC
Q 009373 308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC---TEANVLLVATWIP--HTG 381 (536)
Q Consensus 308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~--h~~ 381 (536)
|. .|.+.++|..+.+++..+.......|..+.++..|..|+.-+.|..||.|+++.-. ....+.+.+.+.. ...
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 99 79999999999999988864344789999999999999999999999999987321 1112222222211 112
Q ss_pred CeEEEEEcC--CeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc-ccEEEEEecCC--EEEEe
Q 009373 382 PVNSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGAD--RIVCG 455 (536)
Q Consensus 382 ~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~sg 455 (536)
.=.++.|++ .|+++++. -..++||.-.. ....++++|.. .....+.+++- .+++-
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~-------------------GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSI-------------------GSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCC-------------------cceeeeecCCchhheeecccccceeeeeec
Confidence 234566654 67777664 46799998766 34556677766 44556666665 55555
Q ss_pred cCCCeEEEEeCCchhhHHHH
Q 009373 456 GEEGIVRIWNFSQAFEIERR 475 (536)
Q Consensus 456 ~~Dg~i~vW~~~~~~~~~~~ 475 (536)
..|.|++|....-+....+
T Consensus 312 -~sg~v~iw~~~~~enwsaf 330 (405)
T KOG1273|consen 312 -ASGVVYIWAVVQVENWSAF 330 (405)
T ss_pred -cCCceEEEEeecccchhhc
Confidence 6789999998765544433
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.5e-20 Score=168.61 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=168.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---eee------------------eCCCCceEEEEecC---CCEEEEEeCCCcEEEE
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFS---IAS------------------SKPLGCTIRAVAAD---KKLLVAGGTDGFIHCW 225 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~---~~~------------------~~~~~~~v~~~~~~---~~~l~sg~~dg~i~vw 225 (536)
|+++|.|+.|..|.|||+.-... ... ..+|+..|.+++.+ .+.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 67999999999999999853211 111 13577777777744 5689999999999999
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE-eEeeeccccEEEEe--
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-LKVLRHSDWVYGLA-- 299 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~-- 299 (536)
|+.+++ +...+..|.+.|.++.| .+..|++|+.|++|.+.|.+.... -..+...+.|-.+.
T Consensus 272 D~~~g~-------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 272 DVDTGK-------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD 338 (463)
T ss_pred EcCCCC-------------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEec
Confidence 998875 56667789999999999 568999999999999999985332 23344666676666
Q ss_pred ec-CCEEEEec-CCcEEEEeCCCC-cEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373 300 PH-DTTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVAT 375 (536)
Q Consensus 300 ~~-~~~l~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 375 (536)
+. ...++++. ||.++-+|+|.. +++.++. +|.++|.++++++.- .+++|++.|+.|++|++..... ..+..
T Consensus 339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~----~~v~~ 413 (463)
T KOG0270|consen 339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP----KSVKE 413 (463)
T ss_pred CCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC----ccccc
Confidence 33 33445555 899999999986 7888886 799999999998754 5789999999999999976632 11111
Q ss_pred ccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcc
Q 009373 376 WIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 376 ~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~ 410 (536)
-.-.-+...|.+++| .+++.|+..+.++|||+.+.
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 111123456667765 58889999999999999874
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.5e-22 Score=188.45 Aligned_cols=221 Identities=27% Similarity=0.366 Sum_probs=194.9
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 228 (536)
.+.+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|-++. ++..+|++|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 356678999999998877889999999999999999988888888999999998876 677899999999999999997
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT 303 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~ 303 (536)
++ ..+.++.+|...+.++.|+ +.++++|+.|+.+++||.+...|...+. |...|..+. |+|+
T Consensus 101 eA-------------k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 101 EA-------------KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR 167 (825)
T ss_pred hh-------------hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence 75 3667899999999999995 4788899999999999999888988888 665555544 9999
Q ss_pred EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373 304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
+++.++ |.++++||+..|+....|. .|.+.+.++.|+|..-++++|+.|+++++||+++- ..+....+....
T Consensus 168 ~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------e~I~s~~~~~~~ 240 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------EVISSGKPETDG 240 (825)
T ss_pred eeeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeecccee------EEeeccCCccCC
Confidence 999999 6999999999999999996 59999999999999999999999999999999877 566666777889
Q ss_pred eEEEEEcCC
Q 009373 383 VNSLAFEFP 391 (536)
Q Consensus 383 v~~l~~~~~ 391 (536)
|.+++|++.
T Consensus 241 v~~~~fn~~ 249 (825)
T KOG0267|consen 241 VRSLAFNPD 249 (825)
T ss_pred ceeeeecCC
Confidence 999999873
No 145
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=1.9e-20 Score=176.19 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=111.1
Q ss_pred CCcEEEEeCCCC-cEEEEEcc--ccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCccc-cccceeeeccCCCCCeE
Q 009373 310 GSDVYIWDTNSG-CLLTVVNG--AHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTE-ANVLLVATWIPHTGPVN 384 (536)
Q Consensus 310 d~~i~i~d~~~~-~~~~~~~~--~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~ 384 (536)
.|.|-||+++.. +....... .....|+.+.|+| |...|+++++||.|++|.+..+... ....+...+.+|...|+
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 566677766542 21111100 1345688999999 5678999999999999999776433 23345667889999999
Q ss_pred EEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCC
Q 009373 385 SLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEG 459 (536)
Q Consensus 385 ~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg 459 (536)
++.|+| +.|++++.|.+|++||+.+.. ....+.||...|++++++++ +++|.+.||
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~-------------------~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg 742 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLANAK-------------------LYSRLVGHTDQIFGIAWSPDGRRIATVCKDG 742 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhhhh-------------------hhheeccCcCceeEEEECCCCcceeeeecCc
Confidence 999998 899999999999999999843 23347899999998887765 999999999
Q ss_pred eEEEEeCCchhhH
Q 009373 460 IVRIWNFSQAFEI 472 (536)
Q Consensus 460 ~i~vW~~~~~~~~ 472 (536)
+|++|+...+++.
T Consensus 743 ~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 743 TLRVYEPRSREQP 755 (1012)
T ss_pred eEEEeCCCCCCCc
Confidence 9999999887654
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.4e-19 Score=157.78 Aligned_cols=289 Identities=17% Similarity=0.205 Sum_probs=204.0
Q ss_pred ceeeeeCccccEEEEEEec-----CCCEEEEEeCCCcEEEEECCCCc---eeeeeC--CCCceEEE--Ee---c-CCCEE
Q 009373 150 SIDVLYGHTEAVLTVFVLA-----SAKLLFTSGYDSIVRMWHLEDGF---SIASSK--PLGCTIRA--VA---A-DKKLL 213 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~-----~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~--~~~~~v~~--~~---~-~~~~l 213 (536)
..+...+|+.+|..++|++ +...++|.+ ...+.+|...... .++.+. .+....+. ++ . ...++
T Consensus 30 t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~l 108 (385)
T KOG1034|consen 30 TNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFL 108 (385)
T ss_pred eeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeE
Confidence 4456778999999999985 233555555 4678888876433 223221 23333322 22 2 24588
Q ss_pred EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee
Q 009373 214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR 290 (536)
Q Consensus 214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 290 (536)
++|+.-|.|+|.|+.++. ....+.+|...|..+.+ ++++++++|.|.+|++|++++..++..+.
T Consensus 109 a~~G~~GvIrVid~~~~~-------------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQ-------------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EeecceeEEEEEecchhh-------------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 999999999999997653 56678899999999999 56799999999999999999999999986
Q ss_pred ----ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEE---------------------------ccccccceE
Q 009373 291 ----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVV---------------------------NGAHVGNTK 336 (536)
Q Consensus 291 ----~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~---------------------------~~~~~~~i~ 336 (536)
|.+.|.++. .++.++++++ |.++++|++...+....+ ..-|...|-
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 999999998 7888999998 999999999843211100 012444555
Q ss_pred EEEEeCCCCEEEEEcCCCcEEEEEcc-cCcc-------ccccceeeeccCCCCCeEEEEEc--C--CeEEEEeCCCcEEE
Q 009373 337 SLARSHTGDFLFTGGEDGAIHMYEII-NDCT-------EANVLLVATWIPHTGPVNSLAFE--F--PWLVSAAGDGKLSL 404 (536)
Q Consensus 337 ~l~~~~~~~~l~tg~~dg~i~iwd~~-~~~~-------~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~v 404 (536)
|+.|- |+++++-+-++.|..|..- -... ......+..+.-....|+-+.|. + +.|+.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 55553 6889999999999999872 2111 11123344555556677777774 4 79999999999999
Q ss_pred EECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373 405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~ 467 (536)
||++....... ........+....-++++-++..|+...+|++|--||.-
T Consensus 334 wdL~~~ep~~~-------------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKC-------------TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccC-------------ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99987533210 011111233444556777777899999999999999853
No 147
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=7.9e-21 Score=176.92 Aligned_cols=248 Identities=22% Similarity=0.306 Sum_probs=189.3
Q ss_pred eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--------ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009373 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--------FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFI 222 (536)
Q Consensus 153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i 222 (536)
++..|.+.|+.+.|+|....|++|+.||++++|+++.. +++.++.+|.++|+|+. .++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 88899999999999999999999999999999999322 56888999999999887 789999999999999
Q ss_pred EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEE
Q 009373 223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYG 297 (536)
Q Consensus 223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~ 297 (536)
+.|++... ...++ ..........+.||++.|..+++ ..+.|++++.||+++.|+...... .++. ..+.-.+
T Consensus 369 ~~w~~p~n-~dp~d--s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 369 RCWNLPPN-QDPDD--SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeccCCC-CCccc--ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99987622 11111 11223345668899999999999 557899999999999999876555 3333 3333344
Q ss_pred EeecC-C--E-EEEecCCcEEEEeCCCCcEEEEEccc------cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc
Q 009373 298 LAPHD-T--T-VASTSGSDVYIWDTNSGCLLTVVNGA------HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE 367 (536)
Q Consensus 298 ~~~~~-~--~-l~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~ 367 (536)
++... + . +++..-+.-.+++......+..+... ....+..+..+|.+.+.+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~--- 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG--- 521 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---
Confidence 54211 1 1 11122344444555555444444321 1235677889999999999999999999999999
Q ss_pred cccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373 368 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 368 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
.++.....|...+++++++| .+|++++.|+.+++|.+...
T Consensus 522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 78888899999999999986 69999999999999998653
No 148
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.9e-19 Score=153.01 Aligned_cols=281 Identities=17% Similarity=0.156 Sum_probs=200.5
Q ss_pred CCCcEEEEECCCCce---eeeeCCCCceEEEEe--c-CCCEEEEEeCC-------CcEEEEEcccCccceecccCccccc
Q 009373 178 YDSIVRMWHLEDGFS---IASSKPLGCTIRAVA--A-DKKLLVAGGTD-------GFIHCWRAVEVLPHLFDISGSEKQN 244 (536)
Q Consensus 178 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~--~-~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~ 244 (536)
.|+.|.+-+++.+.. .+.+..+.+.|..++ | +.+.|+++..+ ..+.||.+...... .......
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~----S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ----SNSSTLE 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc----cccchhh
Confidence 367888877765432 234566777888776 3 55666666542 23678988654311 1111223
Q ss_pred ceEEee-CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE-eEeee------ccccEEEEe----ecCCEEEEecC
Q 009373 245 TQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR------HSDWVYGLA----PHDTTVASTSG 310 (536)
Q Consensus 245 ~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~------~~~~v~~~~----~~~~~l~~~~d 310 (536)
.+..+. .+-+.|.|+.| +++.+++-. |..|.+|++..+.. ...+. +....++-. .+++.+++.+|
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d 192 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD 192 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC
Confidence 333343 45568999999 667777665 89999999987665 33332 122222222 36889999999
Q ss_pred CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc
Q 009373 311 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE 389 (536)
Q Consensus 311 ~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 389 (536)
+++..||+++.+....+..+|...+..+.|+|+.+ +|++|+.||.|+|||.+..+ .++.++.+|...|+++.|+
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEec
Confidence 99999999999999999889999999999999875 68899999999999999875 6789999999999999998
Q ss_pred C---CeEEEEeCCCcEEEEECCcccccCCCCCCCce---------eeEE-eeCCCeeeeccccccEEEEEecCC---EEE
Q 009373 390 F---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV---------SRVI-EVEPPQRMLHGFECNLLSVDIGAD---RIV 453 (536)
Q Consensus 390 ~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~v~~~~~~~~---~l~ 453 (536)
| .++++||.|..|.+|.............+... .+.. -.......+..|...|.+++++.. .+|
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 7 68999999999999987653322111111100 0000 112233467889999999999875 899
Q ss_pred EecCCCeEEEEeCCc
Q 009373 454 CGGEEGIVRIWNFSQ 468 (536)
Q Consensus 454 sg~~Dg~i~vW~~~~ 468 (536)
+-+.||.+.|=+++.
T Consensus 348 SLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 348 SLSYDGRVIISSVPR 362 (370)
T ss_pred EeccCceEEeecCCh
Confidence 999999999877764
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=2.4e-19 Score=162.87 Aligned_cols=287 Identities=16% Similarity=0.130 Sum_probs=200.3
Q ss_pred ceeeeeCccccEEEEEEecCC--CEEEEEeCCCcEEEEECCCC----ceeeeeCCCCceEEEEe---cCCCEEEEEeCCC
Q 009373 150 SIDVLYGHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA---ADKKLLVAGGTDG 220 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~--~~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg 220 (536)
...+.+-|.+.|++++|+|.. +++|+|+.-|.|-+||+.+. ..+..+.+|..+|.++. .+...+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 456777899999999999975 48999999999999999532 34566788988887765 3566899999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE-eEeee-ccccEE
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVY 296 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~-~~~~v~ 296 (536)
+|++-|++... ...+..+......+.++.| +...++.+..=|...+||.+++.. ...+. |...|.
T Consensus 258 tiR~~D~~~~i-----------~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 258 TIRLQDFEGNI-----------SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeeeecchh-----------hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999997753 1222333333445666666 455667777777999999998765 33344 777999
Q ss_pred EEe---ecCCEEEEec-CCcEEEEeCCCCcE-----EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc
Q 009373 297 GLA---PHDTTVASTS-GSDVYIWDTNSGCL-----LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE 367 (536)
Q Consensus 297 ~~~---~~~~~l~~~~-d~~i~i~d~~~~~~-----~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~ 367 (536)
+++ ....++++++ |++.+|||++.-.. +..+ .|...|.+..|+|++..|+|.+.|..|+|||..--..
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa- 403 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA- 403 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCceEeeccCCceEEeecccccc-
Confidence 998 3466788888 99999999986432 3333 5999999999999998899999999999999841110
Q ss_pred cccceeeeccCCCC------CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373 368 ANVLLVATWIPHTG------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 439 (536)
Q Consensus 368 ~~~~~~~~~~~h~~------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (536)
...+..+ ..|.. ......|+| .++++|-.-..|-|+|-..++....... +. ...-
T Consensus 404 -~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~-----------P~----~~tI 466 (498)
T KOG4328|consen 404 -KDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD-----------PE----SSTI 466 (498)
T ss_pred -cCCccce-eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC-----------cc----cccc
Confidence 0011211 12221 234557777 6888888888899999876432221110 00 0111
Q ss_pred ccEEEEEecCC-EEEEecCCCeEEEEeCC
Q 009373 440 CNLLSVDIGAD-RIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 440 ~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~ 467 (536)
..+..+.|-++ .++-|+..|.|+||--+
T Consensus 467 ~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 467 PSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccceeecccccceeccCCccceEEEEecC
Confidence 34566777777 55566678888888644
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=160.45 Aligned_cols=240 Identities=19% Similarity=0.194 Sum_probs=176.6
Q ss_pred eeCccccEEEEEEecCC--CEEEEEeCCCcEEEEECCCC----------------ceeeeeCCCCceEE--EEec-CCCE
Q 009373 154 LYGHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDG----------------FSIASSKPLGCTIR--AVAA-DKKL 212 (536)
Q Consensus 154 l~~h~~~V~~v~~~~~~--~~l~sgs~dg~v~iwd~~~~----------------~~~~~~~~~~~~v~--~~~~-~~~~ 212 (536)
..+|.+.|..+.-++-+ .+.++=+..|.|.||++... +++.++.+|...-+ +++| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677777777777654 46667778999999997432 45666777765444 4444 2346
Q ss_pred EEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCc---eEe
Q 009373 213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL---KCL 286 (536)
Q Consensus 213 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~---~~~ 286 (536)
|++|..-+.|++|...++.-. .-...+.+|+..|..++| ..+.|++||.||+|+|||++.+ .++
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~----------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWK----------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred cccCccccceEeeeeccCcee----------ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 889999999999998776421 123346679999999999 5689999999999999999988 445
Q ss_pred EeeeccccEEEEeecC--CEEEEec-CCcEEEEeCCC---CcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEE
Q 009373 287 KVLRHSDWVYGLAPHD--TTVASTS-GSDVYIWDTNS---GCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMY 359 (536)
Q Consensus 287 ~~~~~~~~v~~~~~~~--~~l~~~~-d~~i~i~d~~~---~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iw 359 (536)
.+-.|.+.|+.+++++ .+|++|+ ||+++|||++. ++++..|+ .|..+|+++.|+|.. ..|++++.|..|.+|
T Consensus 297 ~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 5544999999998543 3788888 79999999986 46777886 599999999999964 578889999999999
Q ss_pred EcccCccccc-----c-----ceeeeccCC--CCCeEEEEEc---CCeEEEEeCCCcEEEE
Q 009373 360 EIINDCTEAN-----V-----LLVATWIPH--TGPVNSLAFE---FPWLVSAAGDGKLSLI 405 (536)
Q Consensus 360 d~~~~~~~~~-----~-----~~~~~~~~h--~~~v~~l~~~---~~~l~s~s~dg~i~vw 405 (536)
|+........ . .+-+-+.-| ...|..+.|+ |.+|++.+.|| +.||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 9965432100 0 111122334 3467788887 48999999998 4444
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.5e-19 Score=154.21 Aligned_cols=269 Identities=20% Similarity=0.312 Sum_probs=191.1
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCc-------e-----eeee-CCCCceEEEEe---------cCCCEEEEEeC
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-------S-----IASS-KPLGCTIRAVA---------ADKKLLVAGGT 218 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-------~-----~~~~-~~~~~~v~~~~---------~~~~~l~sg~~ 218 (536)
...+.|+|||..|++-+.|..+.+|++.... . ...+ ......|+..+ |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3467899999999999999999999985321 0 0011 11233443322 77889999999
Q ss_pred CCcEEEEEcccCccceecccCcccccceEEeeCCccCE---EEEEE--eCCEEEEEecCCeEEEEeC-CCceEeEe---e
Q 009373 219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI---TSLAL--DLTRIYSGSWDMTVRVWDR-ALLKCLKV---L 289 (536)
Q Consensus 219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~--~~~~l~s~s~dg~i~iwd~-~~~~~~~~---~ 289 (536)
+.-|++||.-+|+ .........|.+.+ .+++| ||..|++| ..+.|++||+ +.|+.-.. +
T Consensus 132 ~~PIh~wdaftG~-----------lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 132 DQPIHLWDAFTGK-----------LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred cCceeeeeccccc-----------cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 9999999998875 22333344455444 47788 77787765 4689999998 44443222 2
Q ss_pred e-----ccccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCcEEEE
Q 009373 290 R-----HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMY 359 (536)
Q Consensus 290 ~-----~~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iw 359 (536)
. ..+-+.+++ | +...++.++ ...+-||.-..+.++..+. +|.+.|+.+.|.++|+.|++|.. |-.|-.|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 2 345556665 4 445788888 6788888888888888885 79999999999999999999876 6789999
Q ss_pred EcccCccccccceeeeccCCCC-CeEEEEEc----CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeee
Q 009373 360 EIINDCTEANVLLVATWIPHTG-PVNSLAFE----FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 434 (536)
Q Consensus 360 d~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (536)
|++... .++..+..|.+ .-..|.|+ +++|++|+.||.|++||+++.- .....
T Consensus 279 DiR~~~-----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g------------------n~~sv 335 (406)
T KOG2919|consen 279 DIRYSR-----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG------------------NEVSV 335 (406)
T ss_pred eehhcc-----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC------------------Ccccc
Confidence 999874 56777788876 55567774 3899999999999999998741 22233
Q ss_pred eccccccEEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009373 435 LHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 435 ~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~ 468 (536)
+..+...+..++.++- .++|++.. ++|..++
T Consensus 336 ~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~ 368 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPK 368 (406)
T ss_pred cccccccccceecCcccceeeeccCc---eeecCCC
Confidence 4556677777777776 56666543 4444443
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.4e-20 Score=160.69 Aligned_cols=185 Identities=15% Similarity=0.194 Sum_probs=149.8
Q ss_pred CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEe
Q 009373 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL 286 (536)
Q Consensus 211 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~ 286 (536)
..++++-..|+|++||..++. ....+.++...+..+.| .+..+.+|+.||+|++||+++....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 568899999999999997753 55667788888888888 3468999999999999999987766
Q ss_pred Eeee---cc-ccEEEEe--ecCCEEEEec-----CCcEEEEeCCCCcE-EEEEccccccceEEEEEeCC-CCEEEEEcCC
Q 009373 287 KVLR---HS-DWVYGLA--PHDTTVASTS-----GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHT-GDFLFTGGED 353 (536)
Q Consensus 287 ~~~~---~~-~~v~~~~--~~~~~l~~~~-----d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~-~~~l~tg~~d 353 (536)
..+. ++ .+..+++ ..++.+++|. +..|.+||++..+. +..+...|...|+++.|+|. .++|++|+.|
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 6554 33 4566777 4677888776 35699999999877 78887889999999999995 4799999999
Q ss_pred CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373 354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 411 (536)
|.|.+||+...... ..+.....|...|.++.|.+ +.|.+-+..++..+|+++.+.
T Consensus 188 GLvnlfD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ceEEeeecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 99999999877332 33444456888899999965 479999999999999998754
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-20 Score=188.54 Aligned_cols=277 Identities=16% Similarity=0.141 Sum_probs=200.7
Q ss_pred EEEEecCCC-EEEEE----------eCCCcEEEEECCCCce------eeeeCC-CCceEEEEecCC----CEEEEEeCCC
Q 009373 163 TVFVLASAK-LLFTS----------GYDSIVRMWHLEDGFS------IASSKP-LGCTIRAVAADK----KLLVAGGTDG 220 (536)
Q Consensus 163 ~v~~~~~~~-~l~sg----------s~dg~v~iwd~~~~~~------~~~~~~-~~~~v~~~~~~~----~~l~sg~~dg 220 (536)
.++|+|.+. ++++| +.+.++-||.+..... +..+.. +.-.-+++...+ .+|+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 457888776 55554 3355666666543211 111111 111223333333 3689999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee---cccc
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDW 294 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~ 294 (536)
.|.+||...- ........+.+...|.+.|..+.| .++.|++|+.||.|.|||+...+.-.... ..+.
T Consensus 91 ~I~ly~p~~~-------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 91 NIVLYDPASI-------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred ceEEecchhh-------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 9999997542 111234456677889999999999 45799999999999999998765544442 5678
Q ss_pred EEEEeec---CCEEEEec-CCcEEEEeCCCCcEEEEEcccc-ccceEEEEEeCCCC-EEEEEcCCC---cEEEEEcccCc
Q 009373 295 VYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGD-FLFTGGEDG---AIHMYEIINDC 365 (536)
Q Consensus 295 v~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~~~~~~-~l~tg~~dg---~i~iwd~~~~~ 365 (536)
|.+++++ .+.|++++ +|.+.|||++..+++..+.... ...+..++|+|+.. .|++++.|. .|.+||+|...
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 8999965 45788888 7899999999998887775321 23588999999873 566666553 49999999875
Q ss_pred cccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccE
Q 009373 366 TEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL 442 (536)
Q Consensus 366 ~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 442 (536)
.+++++.+|...|.++.|++ .+|++++.|+.|.+|+.++++.... +......+
T Consensus 244 -----sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~-------------------~p~~~nW~ 299 (1049)
T KOG0307|consen 244 -----SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE-------------------LPAQGNWC 299 (1049)
T ss_pred -----CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee-------------------cCCCCcce
Confidence 57788899999999999964 7999999999999999998543322 23344677
Q ss_pred EEEEecCC---EEEEecCCCeEEEEeCCchh
Q 009373 443 LSVDIGAD---RIVCGGEEGIVRIWNFSQAF 470 (536)
Q Consensus 443 ~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~ 470 (536)
+.+.|.++ .+++++.||.|-|+.+....
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 88888765 89999999999999998755
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.8e-19 Score=163.84 Aligned_cols=253 Identities=15% Similarity=0.188 Sum_probs=192.9
Q ss_pred cEEEEEEecCCC-EEEEEeCCCcEEEEECCCC--c--eeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccce
Q 009373 160 AVLTVFVLASAK-LLFTSGYDSIVRMWHLEDG--F--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHL 234 (536)
Q Consensus 160 ~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 234 (536)
.|.++.|+.... .+++.+.|..+++|.-... + .+....+....++++.....++++|+..+.|+|||++..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k---- 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK---- 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH----
Confidence 388999987554 2334456888999974422 1 122233333344444455689999999999999999643
Q ss_pred ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeecc-ccEE-EEe--ecCC-EEEE
Q 009373 235 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS-DWVY-GLA--PHDT-TVAS 307 (536)
Q Consensus 235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~-~~~--~~~~-~l~~ 307 (536)
.....+.+|.+.|+++.+ ...+|++++..|.|.|..+.++.....+.+. +.+. -+. +..+ +|.+
T Consensus 112 ---------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 112 ---------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred ---------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEe
Confidence 356678899999999999 5689999999999999999999888888854 3333 343 4444 4455
Q ss_pred ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373 308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 385 (536)
Q Consensus 308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 385 (536)
++ +|.|.+||+....++..+...|..+...++|+|.. .+|++.+.|..|.+||.+... ....+ ....+..+
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~------s~~~l-~y~~Plst 255 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA------STDRL-TYSHPLST 255 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc------cccee-eecCCcce
Confidence 55 79999999999999888888899999999999965 578889999999999998762 22222 34568899
Q ss_pred EEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC
Q 009373 386 LAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD 450 (536)
Q Consensus 386 l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 450 (536)
++|.+ .+|++|...|.|..||++.. ..+..+++.|...|.+++|.+.
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~------------------k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRST------------------KAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccC------------------CCCceEeeecccceeEEEeeec
Confidence 99975 79999999999999999975 4566778888888888887654
No 155
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=153.06 Aligned_cols=251 Identities=19% Similarity=0.197 Sum_probs=180.7
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEe-cCCCEEEEEeCCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~ 227 (536)
+...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+. .+...|+.+. ..+..+.+-+.|+.+.+|++
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 4568889999999999987665 8899999999999999999888888 5566777776 33478999999999999998
Q ss_pred ccCccc-------------eecccCcccc---------------------cc--eE----EeeCCccCEEEEEE---eCC
Q 009373 228 VEVLPH-------------LFDISGSEKQ---------------------NT--QF----RLWEHEGPITSLAL---DLT 264 (536)
Q Consensus 228 ~~~~~~-------------~~~~~~~~~~---------------------~~--~~----~~~~h~~~v~~l~~---~~~ 264 (536)
...... .+.+....+. .. +. .-.+..+.+++..+ .+.
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 763210 0000000000 00 00 00123456777775 333
Q ss_pred --EEEEEecCCeEEEEeCCCceEeEeee-----------ccccEEEEeecC---CEEEEecCCcEEEEeCCCC--cEE-E
Q 009373 265 --RIYSGSWDMTVRVWDRALLKCLKVLR-----------HSDWVYGLAPHD---TTVASTSGSDVYIWDTNSG--CLL-T 325 (536)
Q Consensus 265 --~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~---~~l~~~~d~~i~i~d~~~~--~~~-~ 325 (536)
.+++|..+|.|.+||+.++..+-.+. |..+|.++..+. +-+..+.+..+..|++... ... .
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 46788899999999999874333221 777888887432 2222233667888877643 211 1
Q ss_pred EEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEE
Q 009373 326 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLS 403 (536)
Q Consensus 326 ~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~ 403 (536)
....-..-.+..+.+-||++.+||++.|+.||||+.++. .++..+.-|.+.|++++|+| +.++++|.|+.|.
T Consensus 245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl------~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL------NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC------CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 111112335778889999999999999999999999999 78889999999999999998 6999999999999
Q ss_pred EEEC
Q 009373 404 LIDV 407 (536)
Q Consensus 404 vwd~ 407 (536)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 156
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=1.5e-17 Score=157.96 Aligned_cols=240 Identities=13% Similarity=0.089 Sum_probs=168.4
Q ss_pred ceeeeeCccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCCEEEEE-eCCCcEEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAG-GTDGFIHCWR 226 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg-~~dg~i~vwd 226 (536)
.+..+.+|.. +.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+. ....+++++++.++++ +.++.+++||
T Consensus 23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 4566666644 6789999999876 567789999999999998877665433 3455677888877554 5689999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC-eEEEEeCCCceEeEeeeccccEE--EEeec
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-TVRVWDRALLKCLKVLRHSDWVY--GLAPH 301 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~v~--~~~~~ 301 (536)
+.+.. ....+. +...+.++++ ++..+++++.++ .+.+||..+++..........+. .+.++
T Consensus 102 ~~~~~-------------~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d 167 (300)
T TIGR03866 102 IETRK-------------VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD 167 (300)
T ss_pred CCCCe-------------EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence 97642 222222 2234567777 678888888765 56778998887766554333333 44588
Q ss_pred CCEEEEec--CCcEEEEeCCCCcEEEEEccc----cc--cceEEEEEeCCCCEEEE-EcCCCcEEEEEcccCccccccce
Q 009373 302 DTTVASTS--GSDVYIWDTNSGCLLTVVNGA----HV--GNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLL 372 (536)
Q Consensus 302 ~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~----~~--~~i~~l~~~~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~ 372 (536)
++.+++++ ++.|.+||+.+++.+..+... +. .....++|+|+++++++ .+.++.+.+||+.+. +.
T Consensus 168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------~~ 241 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------EV 241 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------cE
Confidence 88775543 799999999999877665311 11 12356889999998554 455678999999876 33
Q ss_pred eeeccCCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECCccc
Q 009373 373 VATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLL 411 (536)
Q Consensus 373 ~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~ 411 (536)
+..+ .+...+.+++|+| .+|+++ +.+|.|.+||+++..
T Consensus 242 ~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 242 LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 3322 2345789999976 677776 468999999999853
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.1e-18 Score=173.56 Aligned_cols=290 Identities=16% Similarity=0.210 Sum_probs=200.6
Q ss_pred eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC---ceEEEEe----cCCCEEEEEeCCCcEEEE
Q 009373 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVA----ADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~~v~~~~----~~~~~l~sg~~dg~i~vw 225 (536)
.+.+...+-..+.|+|-...++++...-.|+|||.+.++.+..+..+. ..|..+. .|..++++|+.||.|+||
T Consensus 1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 334444556778899988999999988899999999999988775543 3444444 466799999999999999
Q ss_pred EcccCccceecccCcccccceEE---ee----CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--cccc
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFR---LW----EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDW 294 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~---~~----~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~ 294 (536)
+-..... .....+.. +. +..+.-.-+.| ..++|++++.-..|+|||.........+. ....
T Consensus 1139 k~y~~~~--------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1139 KDYADKW--------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred ccccccc--------CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence 7432210 00011111 11 11111133455 45667777768999999999888887776 5566
Q ss_pred EEEEe---ecCCEEEEec-CCcEEEEeCCCCcE---EEEEccccccc--eEEEEEeCCCCE-EEEEcCCCcEEEEEcccC
Q 009373 295 VYGLA---PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVGN--TKSLARSHTGDF-LFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 295 v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~--i~~l~~~~~~~~-l~tg~~dg~i~iwd~~~~ 364 (536)
|++++ .+|+.+++|. ||.|++||.+.... +.... .|... |..+.+.+.|-. |++|+.||.|++||++..
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 77887 5688888888 99999999987543 44443 57776 999999987754 999999999999999986
Q ss_pred ccccccceeeeccCCC--C-CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373 365 CTEANVLLVATWIPHT--G-PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 439 (536)
Q Consensus 365 ~~~~~~~~~~~~~~h~--~-~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (536)
... ...+...|. + ..+++..++ ..+++|+. +.|+||++...+..... ....++....
T Consensus 1290 ~~e----~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k-------------~n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1290 SKE----TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK-------------YNPGFMGQRI 1351 (1387)
T ss_pred ccc----ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc-------------cCcccccCcC
Confidence 221 111222232 3 589999976 78888888 99999998753221111 1111223333
Q ss_pred ccEEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009373 440 CNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 440 ~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~ 469 (536)
..+.++.|++. .+|+|+.|.+|.||..+.+
T Consensus 1352 gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 45577888776 8899999999999988764
No 158
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.4e-17 Score=139.35 Aligned_cols=233 Identities=19% Similarity=0.249 Sum_probs=174.7
Q ss_pred CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce------eeee---------CCCCceEEEEecCC
Q 009373 146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS------IASS---------KPLGCTIRAVAADK 210 (536)
Q Consensus 146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~------~~~~---------~~~~~~v~~~~~~~ 210 (536)
.|+.++-..++|.++|+.++|. ..+|++|+ ||.|+-|....... +... .-.....+.+.|..
T Consensus 50 ~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e 126 (325)
T KOG0649|consen 50 PGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE 126 (325)
T ss_pred CCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC
Confidence 4666778889999999999998 56788877 59999998654321 1111 11112233445788
Q ss_pred CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV 288 (536)
Q Consensus 211 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~ 288 (536)
+.++.++.|+.++.||+++|. ....+.+|++.|.++.- ....+++|+.||++++||.+++++++.
T Consensus 127 nSi~~AgGD~~~y~~dlE~G~-------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDGR-------------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred CcEEEecCCeEEEEEEecCCE-------------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence 888888899999999998874 67789999999999998 557899999999999999999999988
Q ss_pred ee-----------ccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEE
Q 009373 289 LR-----------HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH 357 (536)
Q Consensus 289 ~~-----------~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~ 357 (536)
+. ...+|.+++-+...+++|++..+.+|.+++.++...+. -...+..+.|. .+.++++++.+.|.
T Consensus 194 ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfp--ipa~v~~v~F~--~d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP--IPARVHLVDFV--DDCVLIGGEGNHVQ 269 (325)
T ss_pred eccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEe--cccceeEeeee--cceEEEecccccee
Confidence 75 23467888899999999999999999999999998885 66778888886 45688888888899
Q ss_pred EEEcccCccccccceeeeccCCCCCeEEEEE--cC-CeEEEEeCCCcEEEE
Q 009373 358 MYEIINDCTEANVLLVATWIPHTGPVNSLAF--EF-PWLVSAAGDGKLSLI 405 (536)
Q Consensus 358 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~i~vw 405 (536)
-|.+..- .. ..........++..+ +| .+|-.++....+.|+
T Consensus 270 ~~~l~Gv------l~-a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 270 SYTLNGV------LQ-ANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eeeeccE------EE-EeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 9987554 11 112222233444555 35 566666666666665
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=6.6e-19 Score=161.40 Aligned_cols=282 Identities=15% Similarity=0.153 Sum_probs=195.0
Q ss_pred eCCCcEEEEECCCCceeeeeCCCCc--eEEEEecCC-CEEEEE--eCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373 177 GYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADK-KLLVAG--GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 251 (536)
Q Consensus 177 s~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~-~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (536)
+....+++||+........+..|.. .+..+..+. +.|+++ +.|..+++|.-..... ....+....+
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~---------~Vp~~~k~~g 79 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP---------EVPRVRKLTG 79 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC---------ccceeecccc
Confidence 3345799999976554444332221 255555332 225444 5577788886432210 0111112222
Q ss_pred CccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEE
Q 009373 252 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT 325 (536)
Q Consensus 252 h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~ 325 (536)
. .-.|++. ...++++|+..+.|+|||++...+.+.+. |.+.|+++. ....++++++ +|.|.|..+.++....
T Consensus 80 d--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 80 D--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred c--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence 2 2334443 44789999999999999999777777776 999999998 6688999999 6899999999998888
Q ss_pred EEccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCc
Q 009373 326 VVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGK 401 (536)
Q Consensus 326 ~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~ 401 (536)
.+..+....+.-+.|+|..+ +|.+++.+|.|.+||+.... ....-...|..+...|+|+| .+|++.+.|..
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-----p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-----PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-----cccchhhhccCCcCcceecCCccceEEEecccce
Confidence 88654455677899999776 56788999999999998873 23444568999999999987 68999999999
Q ss_pred EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhc
Q 009373 402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRG 481 (536)
Q Consensus 402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~ 481 (536)
|.+||.+..... .+....|.....++..+|.+|+.|...|.|..||+...+..-....+
T Consensus 233 i~~yD~~s~~s~------------------~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa--- 291 (673)
T KOG4378|consen 233 INIYDIRSQAST------------------DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA--- 291 (673)
T ss_pred EEEeeccccccc------------------ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee---
Confidence 999999853211 12233455566667777779999999999999999865433221111
Q ss_pred ccchhHHHhhhhccccccCC
Q 009373 482 IRLENRMRRRKLQTEMSSKG 501 (536)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~g 501 (536)
....+++++|.|--
T Consensus 292 ------h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 ------HDASVTRVAFQPSP 305 (673)
T ss_pred ------cccceeEEEeeecc
Confidence 12236777777754
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=2.9e-18 Score=149.19 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=189.1
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE---------eCCEEEEEecCC
Q 009373 204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL---------DLTRIYSGSWDM 273 (536)
Q Consensus 204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~---------~~~~l~s~s~dg 273 (536)
..++|||..|++-+.|..+++|++........ ............+. .....|.+.+| +..++++.+.|.
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~-~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK-ADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccC-CCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 35789999999999999999999854211000 00000011111111 22345666666 236889999999
Q ss_pred eEEEEeCCCceEeEeee---ccccEE-----EEeecCCEEEEecCCcEEEEeC-CCCcEEEEE------ccccccceEEE
Q 009373 274 TVRVWDRALLKCLKVLR---HSDWVY-----GLAPHDTTVASTSGSDVYIWDT-NSGCLLTVV------NGAHVGNTKSL 338 (536)
Q Consensus 274 ~i~iwd~~~~~~~~~~~---~~~~v~-----~~~~~~~~l~~~~d~~i~i~d~-~~~~~~~~~------~~~~~~~i~~l 338 (536)
-|++||.-+|+....+. |.+.++ +++++|..|++|....|++||+ +.|+-...+ +.+..+-|.++
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~ 213 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF 213 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence 99999999999887775 544443 4459999999999999999999 666432221 12346788999
Q ss_pred EEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC-CCcEEEEECCcccccC
Q 009373 339 ARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSG 414 (536)
Q Consensus 339 ~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~ 414 (536)
+|+|.. ..++.|+....+-||.-... .++..+.+|.+.|+.|.|.+ +.|++|+. |-.|..||++....+.
T Consensus 214 a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred eccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 999965 48999999999999987777 67888899999999999964 78998886 7889999999743322
Q ss_pred CCCCCCceeeEEeeCCCeeeeccc-----cccEEEEEecCCEEEEecCCCeEEEEeCCc-hhhHHHHHHhhhcccchhHH
Q 009373 415 RPTSGKRVSRVIEVEPPQRMLHGF-----ECNLLSVDIGADRIVCGGEEGIVRIWNFSQ-AFEIERRARALRGIRLENRM 488 (536)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~ 488 (536)
. .+..| ....+.+++.+++|++|+.||.|++||+.+ +.++..... .
T Consensus 288 ~------------------~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~----------~ 339 (406)
T KOG2919|consen 288 Y------------------ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN----------Y 339 (406)
T ss_pred h------------------hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc----------c
Confidence 1 11112 233567778888999999999999999998 443322211 2
Q ss_pred HhhhhccccccCCCCcceeE
Q 009373 489 RRRKLQTEMSSKGGRTDQCS 508 (536)
Q Consensus 489 ~~~~~~~~~~~~g~~~~~~~ 508 (536)
..-...+.++|-=..+|+++
T Consensus 340 sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred cccccceecCcccceeeecc
Confidence 23345677777755555543
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=157.15 Aligned_cols=280 Identities=18% Similarity=0.193 Sum_probs=190.1
Q ss_pred eCCCCceEE--EEecCC--CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEE
Q 009373 196 SKPLGCTIR--AVAADK--KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYS 268 (536)
Q Consensus 196 ~~~~~~~v~--~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s 268 (536)
...+...|. +|+|.. +++++|+..|.|-+||+.+.. .....+..+..|.++|.++.| +...+++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---------KDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---------CccCceEEeccCCccccceEecCCChhheee
Confidence 334444444 455543 589999999999999996332 224466778899999999999 5678999
Q ss_pred EecCCeEEEEeCCCceEeEeeec---cccEEEEe--ec-CCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373 269 GSWDMTVRVWDRALLKCLKVLRH---SDWVYGLA--PH-DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH 342 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~--~~-~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~ 342 (536)
.|.||+|++-|++.......+.. .....++. .+ +..++...=|...+||++++..-.....-|...|++++++|
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 99999999999987654433332 22333333 33 34444444479999999998663333335888999999999
Q ss_pred CC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCC
Q 009373 343 TG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG 419 (536)
Q Consensus 343 ~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 419 (536)
.. .+|+|++.|++.+|||++.-..... ++.....|.-.|.+..|+| ..|++.+.|..|+|||..-.....
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~----- 405 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD----- 405 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC-----
Confidence 65 5799999999999999988754332 3445568999999999997 569999999999999985111000
Q ss_pred CceeeEEeeCCCeeeecccc----ccEE--EEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhh
Q 009373 420 KRVSRVIEVEPPQRMLHGFE----CNLL--SVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKL 493 (536)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~----~~v~--~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (536)
.+...+.|.+. ...+ .+.|+..+++.|-.-..|-|+|-..+..+.+...+.... -..
T Consensus 406 ---------~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t--------I~~ 468 (498)
T KOG4328|consen 406 ---------EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST--------IPS 468 (498)
T ss_pred ---------CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc--------ccc
Confidence 01111111111 1122 344555699999999999999998887665543322211 122
Q ss_pred ccccccCCCCcceeE
Q 009373 494 QTEMSSKGGRTDQCS 508 (536)
Q Consensus 494 ~~~~~~~g~~~~~~~ 508 (536)
-.+|+|-+..+++++
T Consensus 469 vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 469 VNEFHPMRDTLAAGG 483 (498)
T ss_pred ceeecccccceeccC
Confidence 357888887666543
No 162
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=4.6e-16 Score=138.21 Aligned_cols=230 Identities=16% Similarity=0.191 Sum_probs=178.7
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCc--EEEEEcccCcccee
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGF--IHCWRAVEVLPHLF 235 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~--i~vwd~~~~~~~~~ 235 (536)
...+..+.|+.+...|..|+.|| -++|+.+...........+..|...-+...+++..+.+.. +++.++..+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~---- 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT---- 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc----
Confidence 34567777998899999999998 5788877655544444455667777777777777766544 7888775431
Q ss_pred cccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEeec--CCEEEEec
Q 009373 236 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLAPH--DTTVASTS 309 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~--~~~l~~~~ 309 (536)
...-.....+|.++.++.++|+++-.+. |+|||+++.+.++++. +...+.+++++ +.+++--+
T Consensus 80 ----------~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~ 148 (391)
T KOG2110|consen 80 ----------TICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG 148 (391)
T ss_pred ----------eEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC
Confidence 1111234578999999999999888765 9999999999999887 44457777754 34776544
Q ss_pred ---CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc-EEEEEcccCccccccceeeeccCC--CCCe
Q 009373 310 ---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIPH--TGPV 383 (536)
Q Consensus 310 ---d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~v 383 (536)
.|.|.+||+.+-+++..+. .|.+.+-+++|+++|.+|||+++.|+ ||||.+.++ ..+..++.. ...|
T Consensus 149 s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G------~kl~eFRRG~~~~~I 221 (391)
T KOG2110|consen 149 STTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG------QKLYEFRRGTYPVSI 221 (391)
T ss_pred CCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc------cEeeeeeCCceeeEE
Confidence 4899999999999999996 79999999999999999999999998 799999998 455555543 3467
Q ss_pred EEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373 384 NSLAFEF--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
.+|+|++ .+|++.|..++|++|.+...
T Consensus 222 ySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 222 YSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 8999986 79999999999999998764
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=155.35 Aligned_cols=272 Identities=13% Similarity=0.177 Sum_probs=202.2
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEecCCeEEE
Q 009373 201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRV 277 (536)
Q Consensus 201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~i~i 277 (536)
..++.|+|....+++++.||++++|.+.... ...+..+.--..+|.+..| +|. .+++++.....+.
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~-----------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-----------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCcc-----------ChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 3455666889999999999999999986542 2234444445678888888 666 8999999999999
Q ss_pred EeCCCceEeEeee---cc---ccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEE
Q 009373 278 WDRALLKCLKVLR---HS---DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 350 (536)
Q Consensus 278 wd~~~~~~~~~~~---~~---~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg 350 (536)
||+.+.+..+.-. +. -.-..+++++++++..+ .|.|.+....+++.+..++ -.+.|..++|+.+++.|+++
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLAS 362 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEE
Confidence 9999887655433 22 22345668999999888 8999999999999999986 78899999999999999999
Q ss_pred cCCCcEEEEEcccCccccccceeeeccCCCCCe--EEEE--EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE
Q 009373 351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPV--NSLA--FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 426 (536)
Q Consensus 351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 426 (536)
+.+|.|.+||++.. .++..+... +.| ++++ .++.+|++||..|.|.|||.++......
T Consensus 363 ~~~GeV~v~nl~~~------~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~----------- 424 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQN------SCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN----------- 424 (514)
T ss_pred cCCceEEEEecCCc------ceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCC-----------
Confidence 99999999999988 566665432 222 3333 4568999999999999999877533322
Q ss_pred eeCCCeeeeccccccEEEEEecCC--EE--EEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCC
Q 009373 427 EVEPPQRMLHGFECNLLSVDIGAD--RI--VCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGG 502 (536)
Q Consensus 427 ~~~~~~~~~~~~~~~v~~~~~~~~--~l--~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 502 (536)
+.+...+..-...|.++.|+++ .| +|-..+..+|+-.+++............ .-..+.+++|||.|+
T Consensus 425 --PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~-------~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 425 --PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT-------KVGHVTCMAFSPNSG 495 (514)
T ss_pred --CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC-------cccceEEEEecCCCc
Confidence 2333444555567888888877 44 4555688899999988665554433222 223468999999999
Q ss_pred CcceeEeecc
Q 009373 503 RTDQCSVAAK 512 (536)
Q Consensus 503 ~~~~~~~~~~ 512 (536)
.+|.+--++.
T Consensus 496 ~lAvGNe~gr 505 (514)
T KOG2055|consen 496 YLAVGNEAGR 505 (514)
T ss_pred eEEeecCCCc
Confidence 9998754443
No 164
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.8e-17 Score=136.18 Aligned_cols=240 Identities=17% Similarity=0.195 Sum_probs=171.7
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCC----------ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009373 160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE 229 (536)
Q Consensus 160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~ 229 (536)
.|.+-+++|.+++|++|+.+|+|.+..+.+. ..+...++|.++++.+.....+|++|+. |.|+-|.+.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 3556678999999999999999999998532 3455568999999999988888888876 9999998865
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCE
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT 304 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~ 304 (536)
.......-.--+...+...-...-..|+++..+ .+.+++++.|+.++-||+++|+...+++ |.+.|.++. .....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 432100000000000111001112356777774 3567777799999999999999999998 999999998 33445
Q ss_pred EEEec-CCcEEEEeCCCCcEEEEEcc--------cc-ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373 305 VASTS-GSDVYIWDTNSGCLLTVVNG--------AH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 374 (536)
Q Consensus 305 l~~~~-d~~i~i~d~~~~~~~~~~~~--------~~-~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 374 (536)
+++|+ ||++++||.++++.+..+.. .| ...|-+++. +..++++|+ ...+.+|+++.. .+..
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss------e~t~ 241 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS------ESTC 241 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC------CceE
Confidence 55555 99999999999999888742 12 223555555 456887775 456999999987 3333
Q ss_pred eccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373 375 TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 375 ~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 410 (536)
.+ +-.++|..+.|..+.+++++....|.-|.+...
T Consensus 242 vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 242 VF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred EE-ecccceeEeeeecceEEEeccccceeeeeeccE
Confidence 33 345678888999999999998889999988653
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5e-18 Score=146.84 Aligned_cols=258 Identities=16% Similarity=0.203 Sum_probs=176.0
Q ss_pred eCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc----eEeEeee-ccccEEEEe----ecCCEEEEec-CCcEEEEe
Q 009373 250 WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL----KCLKVLR-HSDWVYGLA----PHDTTVASTS-GSDVYIWD 317 (536)
Q Consensus 250 ~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d~~i~i~d 317 (536)
.+|.+-|.++.| .|+++++|+.|++|+|||.+.. .+....+ |.+.|..+. .-|+.+++++ |+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468889999999 7899999999999999996543 3334444 899999987 3588999999 99999997
Q ss_pred CCCC---------cEEEEEccccccceEEEEEeCC--CCEEEEEcCCCcEEEEEcccCccccccceeeecc-------CC
Q 009373 318 TNSG---------CLLTVVNGAHVGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-------PH 379 (536)
Q Consensus 318 ~~~~---------~~~~~~~~~~~~~i~~l~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h 379 (536)
-... ....++. ...+.|+.+.|.|. |-.|++++.||.+|||+..+............+. .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred ecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 6211 1223333 36778999999995 5689999999999999987764443333333333 56
Q ss_pred CCCeEEEEEcC-----CeEEEEeCC-----CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC
Q 009373 380 TGPVNSLAFEF-----PWLVSAAGD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA 449 (536)
Q Consensus 380 ~~~v~~l~~~~-----~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 449 (536)
..+..|+.|++ .+|+.|+.+ +.++||......+.+. ....+.+|..+|.+++|.+
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~---------------kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL---------------KVAELPDHTDPIRDISWAP 233 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee---------------eehhcCCCCCcceeeeecc
Confidence 77889999975 578887776 5899998765422211 1123458889999999877
Q ss_pred C------EEEEecCCCeEEEEeCCchhhHHHHHHhhhcc----------cchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373 450 D------RIVCGGEEGIVRIWNFSQAFEIERRARALRGI----------RLENRMRRRKLQTEMSSKGGRTDQCSVAAKK 513 (536)
Q Consensus 450 ~------~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 513 (536)
+ .||+++.|| |+||++......-.....+.+. ......+-+.=.+.|+--|..|++...+++.
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 5 799999999 9999998533111111111110 0111222234456677777777777777776
Q ss_pred CCcCCCcceee
Q 009373 514 NPMNGNRRSVW 524 (536)
Q Consensus 514 ~~~~~~~~~~~ 524 (536)
+........+|
T Consensus 313 RLWkany~n~~ 323 (361)
T KOG2445|consen 313 RLWKANYNNLW 323 (361)
T ss_pred eehhhhhhhhh
Confidence 66554444444
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=5.4e-18 Score=147.92 Aligned_cols=240 Identities=17% Similarity=0.198 Sum_probs=177.4
Q ss_pred CccccEEEEEEecC----CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcc
Q 009373 156 GHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 156 ~h~~~V~~v~~~~~----~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~ 228 (536)
.|...-+.++|+-+ ..++|.|+.-|.|+|.|+.+++....+.+|+..|..+. | +.++++++|.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 47888888999864 45899999999999999999999999999999998876 4 46799999999999999998
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeE-------------------
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK------------------- 287 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~------------------- 287 (536)
+.... ....-+.+|.+.|.++.| +++++++++.|.++++|++...+...
T Consensus 167 ~~~Cv----------~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt 236 (385)
T KOG1034|consen 167 TDVCV----------AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPT 236 (385)
T ss_pred CCeEE----------EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCc
Confidence 76411 122234579999999999 78899999999999999987332110
Q ss_pred ------ee----eccccEEEEeecCCEEEEec-CCcEEEEeC-CCCcE-------------EEEEccccccceEE--EEE
Q 009373 288 ------VL----RHSDWVYGLAPHDTTVASTS-GSDVYIWDT-NSGCL-------------LTVVNGAHVGNTKS--LAR 340 (536)
Q Consensus 288 ------~~----~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~-~~~~~-------------~~~~~~~~~~~i~~--l~~ 340 (536)
.+ .|..+|-|+..-|.++++-+ ++.|..|.. +-++. +..+. -....|.- .+|
T Consensus 237 ~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 237 PKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAF 315 (385)
T ss_pred cccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEee
Confidence 11 05555666667788888877 899999987 22222 11121 12223443 456
Q ss_pred eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECC
Q 009373 341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 408 (536)
+|-++.||.|...|.|.+||++...+....... -......|...+|+ +..|+....|++|.-||..
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~--~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT--HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEE--eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 677899999999999999999988543211111 12234577777785 5899999999999999864
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.7e-17 Score=142.77 Aligned_cols=271 Identities=15% Similarity=0.192 Sum_probs=184.0
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373 201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW 278 (536)
Q Consensus 201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iw 278 (536)
..+..|++.|.+|++|..||.|.|||+.|- .....+.+|..+|++++| +|..|+|+|.|..|.+|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-------------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEE
Confidence 556677899999999999999999999774 245567899999999999 89999999999999999
Q ss_pred eCCCceEeEeeeccccEEEEe--ec--CCEEEEecCCcEEEEeCCCCcEEEEEccccc----cceEEEEEeCCCCEEEEE
Q 009373 279 DRALLKCLKVLRHSDWVYGLA--PH--DTTVASTSGSDVYIWDTNSGCLLTVVNGAHV----GNTKSLARSHTGDFLFTG 350 (536)
Q Consensus 279 d~~~~~~~~~~~~~~~v~~~~--~~--~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~tg 350 (536)
|+..|.+++.+....+|.... |. +..+++--+..-.+.++..+.... +..... ....+..|++.|+++++|
T Consensus 93 Dl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred eccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCCCccccccccccccccCCCCEEEEe
Confidence 999999999999999999887 33 233333335555555555432211 111111 122334688999999999
Q ss_pred cCCCcEEEEEcccCccccccceeeeccCCC-CCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373 351 GEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 427 (536)
Q Consensus 351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 427 (536)
...|.+.+||..+. .++..++-.. ..|..+.++ +.+|+.-+.|..|+.|+++......+-..-..
T Consensus 172 tsKGkllv~~a~t~------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~------ 239 (405)
T KOG1273|consen 172 TSKGKLLVYDAETL------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP------ 239 (405)
T ss_pred cCcceEEEEecchh------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh------
Confidence 99999999999887 5666665544 677888775 58999999999999999985432211100000
Q ss_pred eCCCeeeeccccccEEEEEecCCEEEEec-CCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcce
Q 009373 428 VEPPQRMLHGFECNLLSVDIGADRIVCGG-EEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 506 (536)
Q Consensus 428 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 506 (536)
..+.+.......-...+++-+|.|++.|+ .-..++||.-..|..++-+. |... .....+.|+|--..+++
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh----G~kg-----E~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH----GTKG-----EELLDVNWHPVRPIIAS 310 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec----CCch-----hheeecccccceeeeee
Confidence 00011111122223345555666776655 45679999999988775432 2211 22345667766555554
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=8.7e-17 Score=144.34 Aligned_cols=290 Identities=22% Similarity=0.268 Sum_probs=198.8
Q ss_pred cccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCc---------eeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEE
Q 009373 158 TEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGF---------SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 158 ~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vw 225 (536)
..+|.++.|.+++. .++||+.|..|++|-+..+. .+..+..|...|.++ +|+|++|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999998766 99999999999999886442 234456777766554 5889999999999999999
Q ss_pred EcccCccceecccC-----cccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEE
Q 009373 226 RAVEVLPHLFDISG-----SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG 297 (536)
Q Consensus 226 d~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~ 297 (536)
....-. +++... .+.......+.+|...|..++| ++..+++++.|.++++||+..|+....+. |...+..
T Consensus 93 k~~~~~--~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVR--IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EecCcC--CccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 876321 111111 2334456677889999999999 88899999999999999999999998887 8888888
Q ss_pred Ee--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc-------c-----------cccc----ceEEEEEeCCCCEEEEEcC
Q 009373 298 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN-------G-----------AHVG----NTKSLARSHTGDFLFTGGE 352 (536)
Q Consensus 298 ~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-------~-----------~~~~----~i~~l~~~~~~~~l~tg~~ 352 (536)
++ |.++++++-+ |...+.+++...+.+.... . -|.. -...++|+|+|.++++...
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 77 6677777766 6656666554433222211 0 0111 2456789999999988642
Q ss_pred ----CCc-----EEEEEcccCccccccceeeeccCCCCCeEEEEEcC-------------------CeEEEEeCCCcEEE
Q 009373 353 ----DGA-----IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-------------------PWLVSAAGDGKLSL 404 (536)
Q Consensus 353 ----dg~-----i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------------~~l~s~s~dg~i~v 404 (536)
.+. .++|+-.... ++...+.+...++..+.|+| ..+++......|+|
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~-----rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLK-----RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred eeeeCCceeeceeEeecccccc-----CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 222 3444433221 34555555566666666643 23344444557999
Q ss_pred EECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhH
Q 009373 405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~ 472 (536)
||.++.. +....-.-|-..++.++|+++ .|+..|.||...+-.++..+.-
T Consensus 326 ydtq~~~------------------P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 326 YDTQTLE------------------PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ecccccc------------------ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 9988742 222222335566666666655 9999999999988888765543
No 169
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1e-18 Score=169.66 Aligned_cols=275 Identities=20% Similarity=0.279 Sum_probs=200.3
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 228 (536)
++.|.||..+|+|+.|...|.+++||+.|..|+||..+++.++....+|.+.+..++ .+..++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 567889999999999999999999999999999999999999999999999998887 456688999999999999998
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEee------eccccEEEEe--e
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL------RHSDWVYGLA--P 300 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~--~ 300 (536)
++. ++..+.+|++.|++++|.+.. +.+.||++++||.+ ....... ...+-+.++. .
T Consensus 263 ~~~-------------pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 263 DGA-------------PVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred CCc-------------hHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccc
Confidence 764 667788999999999997765 78899999999987 1111111 1223333333 4
Q ss_pred cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373 301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 378 (536)
Q Consensus 301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 378 (536)
++.-+.+++ ++.-..|....-. .+...+.-+.++.+ ..+.+++-.+-.+.+|++.++ ...+.+.+
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g------~l~H~l~g 393 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG------QLLHNLMG 393 (1113)
T ss_pred cccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccc------hhhhhhcc
Confidence 556667776 6666666543211 11111111111111 245667777888999999998 67888899
Q ss_pred CCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE--EEecCCEEE
Q 009373 379 HTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS--VDIGADRIV 453 (536)
Q Consensus 379 h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~ 453 (536)
|...+..|.++| ....+++.||...|||+-.+.... ....+|. .+.. ++.+|..++
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik------------------~y~~gh~-kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK------------------HYFIGHG-KLVDGKFSQDGTSIA 454 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce------------------eeecccc-eeeccccCCCCceEe
Confidence 999999999986 577899999999999997753221 1112332 2223 334444777
Q ss_pred EecCCCeEEEEeCCchhhHH
Q 009373 454 CGGEEGIVRIWNFSQAFEIE 473 (536)
Q Consensus 454 sg~~Dg~i~vW~~~~~~~~~ 473 (536)
....-|.++|.....++...
T Consensus 455 lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 455 LSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred cCCCCCceEEeccCCCcccc
Confidence 77778888888777665443
No 170
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=8.4e-17 Score=162.85 Aligned_cols=259 Identities=13% Similarity=0.119 Sum_probs=176.6
Q ss_pred cceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-------ceeeeeC--CCCceEEEEecCCCEEEEEeC
Q 009373 149 YSIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDG-------FSIASSK--PLGCTIRAVAADKKLLVAGGT 218 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~-------~~~~~~~--~~~~~v~~~~~~~~~l~sg~~ 218 (536)
..+..|+.|+..|..++.++.. .+++|||.||+|++||...- +...++. +.....+.+++.++.+|+|+.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4589999999999999998765 89999999999999998532 2233333 333444555689999999999
Q ss_pred CCcEEEEEcccCccceecccCcccccceEEeeCC-ccCEEEE-EE---eCC-EEEEEecCCeEEEEeCCCceEeEeee--
Q 009373 219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSL-AL---DLT-RIYSGSWDMTVRVWDRALLKCLKVLR-- 290 (536)
Q Consensus 219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l-~~---~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~-- 290 (536)
||.|.+.+++........ .........+ .+.+.++ ++ ... .++.+..-+.|..||+++......++
T Consensus 1119 DG~v~~~~id~~~~~~~~------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRV------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred CCeEEEEEccccccccce------eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999998652111000 0111111112 2334444 33 334 78888999999999999887777666
Q ss_pred -ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC---EEEE-Ec-CCCcEEEEEc
Q 009373 291 -HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD---FLFT-GG-EDGAIHMYEI 361 (536)
Q Consensus 291 -~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~---~l~t-g~-~dg~i~iwd~ 361 (536)
..+.|++++ +.+..++.|+ .|.+.+||++-+.++.....++..+|+.+..+|-.. ..++ |+ ..+.|.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 456777776 8888999998 799999999999999988777778899888887433 4444 44 4678999999
Q ss_pred ccCcccccc------ceeeecc-------CCCCCeEEEEE-c-CCeEEEEeCCCcEEEEECCccccc
Q 009373 362 INDCTEANV------LLVATWI-------PHTGPVNSLAF-E-FPWLVSAAGDGKLSLIDVRKLLRS 413 (536)
Q Consensus 362 ~~~~~~~~~------~~~~~~~-------~h~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~~~~~~ 413 (536)
.++.....+ ..+.... .+.-......+ + ..++.+|+.|..|+.||.......
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 887432100 0000000 11111111222 2 379999999999999998765444
No 171
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.5e-18 Score=154.09 Aligned_cols=291 Identities=19% Similarity=0.177 Sum_probs=210.9
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CCCCceEEE--Eec--CCCEEEEEeCCCcEEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRA--VAA--DKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~v~~--~~~--~~~~l~sg~~dg~i~vw 225 (536)
...|.+|.+.|..|.|+..|..|++||.|..|.+||...+.....+ .+|...|.. |-| +...+++.+.||.|++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4578899999999999999999999999999999999988877666 456555533 333 45689999999999987
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee----ccc---cE
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSD---WV 295 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~---~v 295 (536)
.+... ........+..|.++|..++. .+..|++++.|+.+.-+|+++......+. +.. ..
T Consensus 215 ~i~~t----------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 215 EILET----------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred eeccc----------cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence 76432 112335567789999999998 56789999999999999998776544443 222 33
Q ss_pred EEEe--ecC-CEEEEec-CCcEEEEeCCCCcE------EEEEcc-----ccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373 296 YGLA--PHD-TTVASTS-GSDVYIWDTNSGCL------LTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 296 ~~~~--~~~-~~l~~~~-d~~i~i~d~~~~~~------~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd 360 (536)
++++ |.. ..+++++ |.-+++||.+.-.. +..+-. ...-.|++++|+.++.-|.++..|-.|+++.
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 4555 443 3666666 88899999875321 222221 2334799999998888788888888899995
Q ss_pred cccCcc--cc--c--ccee-eeccCCCC--CeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEee
Q 009373 361 IINDCT--EA--N--VLLV-ATWIPHTG--PVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 428 (536)
Q Consensus 361 ~~~~~~--~~--~--~~~~-~~~~~h~~--~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 428 (536)
-..+.. +. . -..+ ..+++|.. .|.++-|-+ .|+++||.-|.|.||+-.++
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~------------------ 426 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG------------------ 426 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh------------------
Confidence 433211 00 0 0112 23678854 578888853 79999999999999998874
Q ss_pred CCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchh
Q 009373 429 EPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAF 470 (536)
Q Consensus 429 ~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~ 470 (536)
+..+.+.+....|.|+.+.+- .|||.|-|.-|+||...+.+
T Consensus 427 -eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 427 -EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred -HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 333444555558889998887 89999999999999985443
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.2e-18 Score=172.49 Aligned_cols=235 Identities=16% Similarity=0.157 Sum_probs=182.3
Q ss_pred ccEEEEEEecCCCE----EEEEeCCCcEEEEECCC---C---ceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009373 159 EAVLTVFVLASAKL----LFTSGYDSIVRMWHLED---G---FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 159 ~~V~~v~~~~~~~~----l~sgs~dg~v~iwd~~~---~---~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw 225 (536)
..-+.++|.+.+.. +|.|..||.|.+||... + ..+.+...|.+.|..+. ..++.|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678889887664 89999999999999865 2 34566788999998876 346799999999999999
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEEeC---CEEEEEecCCeEEEEeCCCceEeEeee-ccc--cEEEEe
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLR-HSD--WVYGLA 299 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~--~v~~~~ 299 (536)
|+....... ...-....+.|.+++|+. ..|++++.+|.+.|||++..+.+-.+. +.. .+..+.
T Consensus 145 Dlnn~~tP~-----------~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 145 DLNKPETPF-----------TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLA 213 (1049)
T ss_pred ccCCcCCCC-----------CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeee
Confidence 996632110 000122467899999944 579999999999999999887777666 332 244555
Q ss_pred --ec-CCEEEEec--C--CcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccccc
Q 009373 300 --PH-DTTVASTS--G--SDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANV 370 (536)
Q Consensus 300 --~~-~~~l~~~~--d--~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~ 370 (536)
|+ ...+++++ | -.|.+||++... +++.+ .+|...|.++.|++.+ .+|++++.|+.|.+|+..++
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg------ 286 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG------ 286 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCCc------
Confidence 33 33444444 3 359999998754 44444 5799999999999977 89999999999999999998
Q ss_pred ceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373 371 LLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 371 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 411 (536)
+.+..+......+..+.|.| ..+++++-||.|.|+.+....
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 67888888888999999975 689999999999999998653
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=6.5e-15 Score=147.06 Aligned_cols=283 Identities=29% Similarity=0.467 Sum_probs=212.1
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeeeeCCCCc-eE--EEE-ecCCC-EEEEEeC-CCcEEE
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-SIASSKPLGC-TI--RAV-AADKK-LLVAGGT-DGFIHC 224 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~-~v--~~~-~~~~~-~l~sg~~-dg~i~v 224 (536)
..+.+|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+..... .+ ..+ .+++. .++..+. |+.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3678899999999999999999999999999999998886 6666655322 22 233 55666 4555444 999999
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CCeEEEEeCCCceEeEeee-ccccEEEEe-
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR-HSDWVYGLA- 299 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~-~~~~v~~~~- 299 (536)
|+.... ......+..|...|..++| ++..+++++. |+.+++|+...+..+..+. |...|.++.
T Consensus 139 ~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 139 WDLSTP------------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred EEecCC------------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence 998651 2356678889999999999 5567888875 9999999999877877777 788898887
Q ss_pred -ecCC-EEEEec-CCcEEEEeCCCCcEEE-EEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373 300 -PHDT-TVASTS-GSDVYIWDTNSGCLLT-VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 375 (536)
Q Consensus 300 -~~~~-~l~~~~-d~~i~i~d~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 375 (536)
+++. .+++++ |+.+++||...+.... .+ .+|.... ...|+|++.++++++.|+.+++|+...... .+..
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~ 279 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL-SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-----LLRT 279 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeec-CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----EEEE
Confidence 6666 555535 8999999999887777 45 3577765 348999998999999999999999987732 2333
Q ss_pred ccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CE
Q 009373 376 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DR 451 (536)
Q Consensus 376 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 451 (536)
+.+|...|.++.|.| ..+++++.|+.+.+||..+........ ...|...+..+.+.+ ..
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 342 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-----------------LKGHEGPVSSLSFSPDGSL 342 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-----------------ecccCCceEEEEECCCCCE
Confidence 368899999999987 778889999999999887642221100 123444455555522 35
Q ss_pred EEEe-cCCCeEEEEeCCchh
Q 009373 452 IVCG-GEEGIVRIWNFSQAF 470 (536)
Q Consensus 452 l~sg-~~Dg~i~vW~~~~~~ 470 (536)
++.+ ..|+.+.+|+.....
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeecCCCcEEeeecCCCc
Confidence 5555 788999999999875
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=8.7e-17 Score=138.11 Aligned_cols=231 Identities=17% Similarity=0.287 Sum_probs=171.7
Q ss_pred eCccccEEEEEEecCC-----CEEEEEeCCCcEEEEECCCC--cee--ee-----eCCCCceEEEEe---cCCCEEEEEe
Q 009373 155 YGHTEAVLTVFVLASA-----KLLFTSGYDSIVRMWHLEDG--FSI--AS-----SKPLGCTIRAVA---ADKKLLVAGG 217 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~-----~~l~sgs~dg~v~iwd~~~~--~~~--~~-----~~~~~~~v~~~~---~~~~~l~sg~ 217 (536)
..|.-+++.+.|.|+. ++|||++ ..+|+|.+... +.. .. -..+..++++|. .+.++|.+.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 5789999999999986 3676654 47999998742 111 11 123455777776 5788999999
Q ss_pred CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-e--CCEEEEEecCCeEEEEeCCCceEeEeee----
Q 009373 218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D--LTRIYSGSWDMTVRVWDRALLKCLKVLR---- 290 (536)
Q Consensus 218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~---- 290 (536)
-|-+..|||++++. ......++..|...|..++| . -+.|++.+.||.|++||++..+-...+-
T Consensus 171 iDTTCTiWdie~~~----------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 171 IDTTCTIWDIETGV----------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred ccCeEEEEEEeecc----------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 99999999998862 12245567899999999999 3 3789999999999999998765444332
Q ss_pred ccccEEEEe---ecCCEEEEec--CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEccc
Q 009373 291 HSDWVYGLA---PHDTTVASTS--GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIIN 363 (536)
Q Consensus 291 ~~~~v~~~~---~~~~~l~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~ 363 (536)
...+...++ .+.+++++-. ...|.+.|++... ++..+. +|.+.|++++|.|.. ..|++++.|..+.+||+..
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 244556666 4566777655 4779999999864 555664 799999999999964 6899999999999999987
Q ss_pred CccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCC
Q 009373 364 DCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGD 399 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~d 399 (536)
........++..+. ..+.|+.+.|++ ++++.+...
T Consensus 320 ~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 320 MPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 64422233444444 577999999974 788877654
No 175
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=8.4e-16 Score=150.94 Aligned_cols=260 Identities=16% Similarity=0.163 Sum_probs=174.8
Q ss_pred CCcEEEEECCCCc-eeeee-CCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccC
Q 009373 179 DSIVRMWHLEDGF-SIASS-KPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP 255 (536)
Q Consensus 179 dg~v~iwd~~~~~-~~~~~-~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 255 (536)
++.+.||++.... +-..+ ......+.+++ .++.+++.|..+|.|.+||+..+.... ..........|..+
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSGLSALEVSHSEP 293 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------CcccccccccCCcC
Confidence 3579999998763 22223 22334455555 578899999999999999998764211 11122334468999
Q ss_pred EEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEe---e----------eccccEEEEe---ecCCEEEEec-CCcEE
Q 009373 256 ITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKV---L----------RHSDWVYGLA---PHDTTVASTS-GSDVY 314 (536)
Q Consensus 256 v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~---~----------~~~~~v~~~~---~~~~~l~~~~-d~~i~ 314 (536)
|+.+.| .+.-+++++.||.|..|+++....... . .....++++. .+...++.|+ +|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 999999 235699999999999998764332111 0 1122345555 4556677777 68877
Q ss_pred EEe---CCCCc-----EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc-cCccccccceeeeccCCCCCeEE
Q 009373 315 IWD---TNSGC-----LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNS 385 (536)
Q Consensus 315 i~d---~~~~~-----~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~ 385 (536)
--+ .+.+. ....+ ..|.+.|+++.++|-+..++..+.|.+++||... .. .++..+..+...|++
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~------~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA------SPLLSLDSSPDYVTD 446 (555)
T ss_pred EEeccCCcccccccccccccc-cccCcceEeeecCCCccceeeeeccceeEeccccCCC------Ccchhhhhccceeee
Confidence 633 33222 11122 3588999999999987665555559999999977 44 577778888888999
Q ss_pred EEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeee--eccccccEEEEEecCCEEEEecCCCe
Q 009373 386 LAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM--LHGFECNLLSVDIGADRIVCGGEEGI 460 (536)
Q Consensus 386 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~Dg~ 460 (536)
++|+| ..++++..||.|.+||+...... +... ..........++..+..|+.|+..|.
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~-----------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~ 509 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEE-----------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGT 509 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccC-----------------CcccccccccccceeecCCCCcEEEEecCCCc
Confidence 99986 68999999999999999753111 1111 11111223344455779999999999
Q ss_pred EEEEeCCch
Q 009373 461 VRIWNFSQA 469 (536)
Q Consensus 461 i~vW~~~~~ 469 (536)
+.+|++...
T Consensus 510 ~~~~~l~~~ 518 (555)
T KOG1587|consen 510 THILKLSES 518 (555)
T ss_pred EEEEEcCch
Confidence 999999743
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.7e-16 Score=140.36 Aligned_cols=298 Identities=13% Similarity=0.137 Sum_probs=202.0
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC------ceeeee-CCCCceEEEEec--CCCEEEEEeCCC
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------FSIASS-KPLGCTIRAVAA--DKKLLVAGGTDG 220 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~------~~~~~~-~~~~~~v~~~~~--~~~~l~sg~~dg 220 (536)
..+-+.+|.+.|.++.|+.++++|++|+.|..+++|+++.. +++... ..|...|.|+.+ .+..+++|+.++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 34578899999999999999999999999999999998643 444433 456678888874 467999999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCC---ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce-EeEee---ec
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH---EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK-CLKVL---RH 291 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~-~~~~~---~~ 291 (536)
+|..-|+++.. ......| .+.|..+.. ..+.|++.+.+|.|.+||.+... ....+ ..
T Consensus 128 ~VI~HDiEt~q--------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 128 TVIKHDIETKQ--------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred eeEeeecccce--------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 99999998753 1122233 348888877 55889999999999999987654 22211 23
Q ss_pred cccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcE-EEEEc--ccc---ccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373 292 SDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCL-LTVVN--GAH---VGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361 (536)
Q Consensus 292 ~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~--~~~---~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~ 361 (536)
.....++. | ...+|++.+ .+.+-+||.+.... +.... .+. ...-.++.|+|+|..|.+--....-.+||+
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 33333333 3 345666666 68899999987532 11110 011 122356789999998887766666677888
Q ss_pred ccCccccccceeeeccCC-------CCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCC-CCC---ceeeEEeeC
Q 009373 362 INDCTEANVLLVATWIPH-------TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPT-SGK---RVSRVIEVE 429 (536)
Q Consensus 362 ~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~---~~~~~~~~~ 429 (536)
-... .++..+ .| ...+.+++|-+ .-+++|+.+-.|++|.+.......... .+. ....-.-+.
T Consensus 274 ~S~R-----~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 274 ISQR-----CFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred eccc-----ceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 7652 122222 22 23566777855 468999999999999987543322211 111 111112335
Q ss_pred CCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCC
Q 009373 430 PPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 430 ~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~ 467 (536)
....++.||...+..+.|++. +|++.|-...+++|.-.
T Consensus 348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 556788999988888877765 88899999999999643
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.2e-16 Score=142.72 Aligned_cols=208 Identities=17% Similarity=0.261 Sum_probs=159.7
Q ss_pred eeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009373 152 DVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 230 (536)
-.+.||+++|..++|+| +...+||||.|.+|.||++..+.....+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l---------------------------------- 120 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL---------------------------------- 120 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc----------------------------------
Confidence 46679999999999999 4668999999999999998765333221
Q ss_pred ccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEE
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV 305 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l 305 (536)
..++..+.+|...|--++|+ .+.|++++.|.+|.+||+.+++.+.++.|.+-|++++ .+|.++
T Consensus 121 ------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 121 ------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLL 188 (472)
T ss_pred ------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCcee
Confidence 12566688999999999994 4789999999999999999999999999999999988 789999
Q ss_pred EEec-CCcEEEEeCCCCcEEEEEcccccc-ceEEEEEeCCCCEEEEEc---CCCcEEEEEcccCccccccceeeeccCCC
Q 009373 306 ASTS-GSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATWIPHT 380 (536)
Q Consensus 306 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 380 (536)
++++ |..|+|||.++++.+..-. +|.+ .-..+.|-.+|.++-||- .+..+-+||..+-..+ ....++.. .
T Consensus 189 ~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP---~~~~elDt-S 263 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP---IALQELDT-S 263 (472)
T ss_pred eeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCceeeeccccccccceeccCcccccCc---ceeEEecc-C
Confidence 9988 9999999999999998874 5665 455666888888555553 3678999998776422 23333332 3
Q ss_pred CCeEEEEEcC--CeEE-EEeCCCcEEEEECCcc
Q 009373 381 GPVNSLAFEF--PWLV-SAAGDGKLSLIDVRKL 410 (536)
Q Consensus 381 ~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~ 410 (536)
+.|.-=-|++ +.++ +|-.|+.|+.|.+...
T Consensus 264 nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 264 NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 3343334454 4554 4556999999998764
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=1.6e-14 Score=144.22 Aligned_cols=307 Identities=30% Similarity=0.479 Sum_probs=219.4
Q ss_pred ceeeeeCcc-ccEEEEEE-ecCCC-EEEEEeC-CCcEEEEECCC-CceeeeeCCCCceEEE--EecCCCEEEEEeC-CCc
Q 009373 150 SIDVLYGHT-EAVLTVFV-LASAK-LLFTSGY-DSIVRMWHLED-GFSIASSKPLGCTIRA--VAADKKLLVAGGT-DGF 221 (536)
Q Consensus 150 ~~~~l~~h~-~~V~~v~~-~~~~~-~l~sgs~-dg~v~iwd~~~-~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~-dg~ 221 (536)
.+..+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...+.. +.+++..+++++. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 456666644 37777777 77777 5555455 99999999998 7788888888877764 4588888888886 999
Q ss_pred EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEecCCeEEEEeCCCceEeE-eee-cccc-E
Q 009373 222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKCLK-VLR-HSDW-V 295 (536)
Q Consensus 222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~i~iwd~~~~~~~~-~~~-~~~~-v 295 (536)
+++|+...+ .....+.+|...|.++++ ++. .+++++.|+.|++||...+.... .+. |... +
T Consensus 180 ~~~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 246 (466)
T COG2319 180 IKLWDLRTG-------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246 (466)
T ss_pred eEEEEcCCC-------------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCccee
Confidence 999998653 255566679999999999 444 45555999999999988777777 454 5544 4
Q ss_pred EEEeecCCEEEEec-CCcEEEEeCCCCcE-EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373 296 YGLAPHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 296 ~~~~~~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 373 (536)
..+.+++.++++++ ++.+++||+..... ...+ .+|...+.++.|+|++..+++++.|+.+.+||..... ..
T Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~ 319 (466)
T COG2319 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK------LL 319 (466)
T ss_pred EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc------eE
Confidence 45668887777666 89999999997765 4444 4688999999999988888889999999999888773 23
Q ss_pred eec--cCCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec
Q 009373 374 ATW--IPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG 448 (536)
Q Consensus 374 ~~~--~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 448 (536)
... ..|...+..+.+.+ ..++.+ ..|+.+.+|++..... ......... +..+.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------------~~~~~~~~~-~~~~~~~ 379 (466)
T COG2319 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP-------------------LKTLEGHSN-VLSVSFS 379 (466)
T ss_pred EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce-------------------eEEecCCce-EEEEEEC
Confidence 333 47887899999932 355555 6789999999987420 001111111 3333332
Q ss_pred C-CEEE-EecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcce
Q 009373 449 A-DRIV-CGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 506 (536)
Q Consensus 449 ~-~~l~-sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 506 (536)
. ..++ .+..++.+.+|+.............. .......+++++..++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 429 (466)
T COG2319 380 PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT----------SRVTSLDFSPDGKSLAS 429 (466)
T ss_pred CCCCEEEEecCCCceEEEecccCeeeeeccCCC----------CcEEEEEECCCCcEEEE
Confidence 2 3333 47899999999999876654433321 34456677777777765
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=149.20 Aligned_cols=335 Identities=17% Similarity=0.223 Sum_probs=223.5
Q ss_pred cceeeeeCccccEEEEEEecCC---CEEEEEeCCCcEEEEECCCCceeeeeC----------------------------
Q 009373 149 YSIDVLYGHTEAVLTVFVLASA---KLLFTSGYDSIVRMWHLEDGFSIASSK---------------------------- 197 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~~---~~l~sgs~dg~v~iwd~~~~~~~~~~~---------------------------- 197 (536)
..++.+.+|..+++.+.+.|.. .++++++.||+|++||...+..++++.
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~ 127 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY 127 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence 4578999999999999999864 478899999999999987664433310
Q ss_pred ---------------------------------------------------------------------------CCCc-
Q 009373 198 ---------------------------------------------------------------------------PLGC- 201 (536)
Q Consensus 198 ---------------------------------------------------------------------------~~~~- 201 (536)
.|.-
T Consensus 128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~ 207 (792)
T KOG1963|consen 128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN 207 (792)
T ss_pred eeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc
Confidence 0111
Q ss_pred -eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373 202 -TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW 278 (536)
Q Consensus 202 -~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iw 278 (536)
.+.+++|+++++++|..||.|.+|.--.. .........+.-|...|.+++| +|.+|++|+..|.+.+|
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGS---------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccc---------ccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 23466789999999999999999974220 1122344556678999999999 89999999999999999
Q ss_pred eCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc----------cccccceEEEEEeCCCC
Q 009373 279 DRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN----------GAHVGNTKSLARSHTGD 345 (536)
Q Consensus 279 d~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~----------~~~~~~i~~l~~~~~~~ 345 (536)
.+.+++....-+-.++|..+. |++.+.+... |+.|.+....+.+...++. ....+-.+.++++|.-+
T Consensus 279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 999998333233778887766 8888776665 9999999876655444432 11244567888999777
Q ss_pred EEEEEcCCCcEEEEEcccCccccccceeeecc-----CCCCCeEEEEEc--CCeEEEEeC--------C--CcEEEEECC
Q 009373 346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWI-----PHTGPVNSLAFE--FPWLVSAAG--------D--GKLSLIDVR 408 (536)
Q Consensus 346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~--~~~l~s~s~--------d--g~i~vwd~~ 408 (536)
.++-.+..|.|.+||+.+.....++.....-. .+.-.+++++.+ +.+++|+-. | -.+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 88889999999999998875433322221111 112245555544 467766542 2 246778766
Q ss_pred cccccCCCCCCCceeeEEeeCCCeeeeccccccE--EEEEe--cCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccc
Q 009373 409 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL--LSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRL 484 (536)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~--~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~ 484 (536)
...+.+... ..+...|.... +++.. .....+|+|.||.++||-+...+.+......---...
T Consensus 439 ~~~kt~~L~--------------T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i 504 (792)
T KOG1963|consen 439 PNSKTFILN--------------TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI 504 (792)
T ss_pred CCcceeEEE--------------EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence 543332211 01123344333 33332 2238999999999999999766655543332222222
Q ss_pred hhHHHhhhhccccccCCCCcce
Q 009373 485 ENRMRRRKLQTEMSSKGGRTDQ 506 (536)
Q Consensus 485 ~~~~~~~~~~~~~~~~g~~~~~ 506 (536)
....+......+|+.||..++.
T Consensus 505 ~sy~k~~i~a~~fs~dGslla~ 526 (792)
T KOG1963|consen 505 GSYHKTPITALCFSQDGSLLAV 526 (792)
T ss_pred eccccCcccchhhcCCCcEEEE
Confidence 2235667789999999977764
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=146.65 Aligned_cols=212 Identities=16% Similarity=0.134 Sum_probs=150.9
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CCCCceEEEEe----cCCCEEEEEeCCCcEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAVA----ADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~----~~~~~l~sg~~dg~i~v 224 (536)
.-+.|.||++.|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.+.. .++..+++|+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45789999999999999999999999999999999999877777766 67888888776 35679999999999999
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE-------eEeee--c-
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-------LKVLR--H- 291 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~--~- 291 (536)
+|+...+....+ .........+..|...|..|+. .++.+.+++.||+|+-+|++.... ...+. +
T Consensus 122 fdl~~~~~~~~d---~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 122 FDLDSSKEGGMD---HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred Eecccccccccc---cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999753211100 0112345556789999999988 447899999999999999976321 11111 1
Q ss_pred ---cccEEEEe-ecCCEEEEec-CCcEEEEeCCCC------------------cEEEEEcccccc-----------ceEE
Q 009373 292 ---SDWVYGLA-PHDTTVASTS-GSDVYIWDTNSG------------------CLLTVVNGAHVG-----------NTKS 337 (536)
Q Consensus 292 ---~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~------------------~~~~~~~~~~~~-----------~i~~ 337 (536)
......++ .+..+|++|+ +--.++||.+.. .++..+..+|.. .++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 11223344 4566777777 788999994321 123333333331 2456
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 338 LARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 338 l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
+.|+|+|.-|++.-..-.|+++|+...
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 789999987777666667999988543
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=3.3e-16 Score=145.30 Aligned_cols=257 Identities=15% Similarity=0.143 Sum_probs=182.4
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeeeCCCC-ce---EEEEe----cCCCEEEEEeCCCcEEEEE
Q 009373 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPLG-CT---IRAVA----ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~-~~---v~~~~----~~~~~l~sg~~dg~i~vwd 226 (536)
-|...|.|+.|+.+...+.+++.+..+.-||+.+... +..+.... .+ +...+ .....++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 4667778999987777777666555555555543321 11111100 01 11111 1235789999999998886
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-eccccEEEEe--ec
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA--PH 301 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~--~~ 301 (536)
-. .........|.+.+.+-.| +|.-|++++.||.|++|.- +|-...++ +...+|+|++ |+
T Consensus 92 k~--------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 92 KS--------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred cc--------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC
Confidence 32 2234456789999999999 7889999999999999985 34333333 3677899988 78
Q ss_pred CCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 302 DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 302 ~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
.+-++-+..+.+.|=-+.....+...+ +|.+-|.++.|++..+++++|++|-..+|||-... .+.+-..|..
T Consensus 157 S~~vl~c~g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-------~Lf~S~~~ey 228 (737)
T KOG1524|consen 157 SNSIVFCQGGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-------NLFTSAAEEY 228 (737)
T ss_pred CCceEEecCCeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccCc-------ccccCChhcc
Confidence 888888888888888887776666665 69999999999999999999999999999996554 5667788999
Q ss_pred CeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCCC
Q 009373 382 PVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEG 459 (536)
Q Consensus 382 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg 459 (536)
+|++++|.|+.++..+.-.++++=.. ..++|+.+++ +|..+++|...|
T Consensus 229 ~ITSva~npd~~~~v~S~nt~R~~~p------------------------------~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 229 AITSVAFNPEKDYLLWSYNTARFSSP------------------------------RVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred ceeeeeeccccceeeeeeeeeeecCC------------------------------CccceEEEEEcCCCceeeccccCc
Confidence 99999999976555544445552211 2245555555 455899998888
Q ss_pred eEEEEe
Q 009373 460 IVRIWN 465 (536)
Q Consensus 460 ~i~vW~ 465 (536)
.+.+=-
T Consensus 279 ~v~~A~ 284 (737)
T KOG1524|consen 279 QLIVAY 284 (737)
T ss_pred eEEEee
Confidence 876633
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.2e-15 Score=149.78 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=176.5
Q ss_pred eeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCCce--eee----eCCCCceEEEEe----cCCCEEEEEeCCC
Q 009373 152 DVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFS--IAS----SKPLGCTIRAVA----ADKKLLVAGGTDG 220 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~~--~~~----~~~~~~~v~~~~----~~~~~l~sg~~dg 220 (536)
.....-...|+|+.|+|. ..+++.|.++|.|.+||+..+.. ... ...|..+++++. +.+.-+++++.||
T Consensus 236 e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG 315 (555)
T KOG1587|consen 236 ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG 315 (555)
T ss_pred eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC
Confidence 333445678999999995 56888999999999999987754 222 245777887775 3346699999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCC---Cce-----EeEee
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA---LLK-----CLKVL 289 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~---~~~-----~~~~~ 289 (536)
.|..|+++.-............... ..-..-...+++++| ++..++.|+.+|.|.-=+.. ... ....+
T Consensus 316 ~i~~W~~~~l~~P~e~~~~~~~~~~-~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~ 394 (555)
T KOG1587|consen 316 SICSWDTDMLSLPVEGLLLESKKHK-GQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF 394 (555)
T ss_pred cEeeeeccccccchhhccccccccc-ccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence 9999987643321111111000000 001122346788888 78899999999999873322 222 11122
Q ss_pred e-ccccEEEEe---ecCCEEEEecCCcEEEEeCC-CCcEEEEEccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEccc
Q 009373 290 R-HSDWVYGLA---PHDTTVASTSGSDVYIWDTN-SGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIIN 363 (536)
Q Consensus 290 ~-~~~~v~~~~---~~~~~l~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~ 363 (536)
. |.+.|+++. .....+.+++|.++++|... ...++..+. .+...+++++|||... .|+++..||.+.+||+..
T Consensus 395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 2 888999998 34556667779999999988 666666664 4777799999999764 677888899999999977
Q ss_pred CccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 364 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
... .++.+...+....+.+.|++ ..|++|...|++.+|++..
T Consensus 474 ~~~----~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 474 DDE----EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc----CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 633 34555555566667777765 6899999999999999975
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=4.6e-15 Score=127.64 Aligned_cols=249 Identities=18% Similarity=0.219 Sum_probs=172.0
Q ss_pred eeeeeCccccEEEEEEec--C-CCEEEEEeC----CCcEEEEECC--CCceeeee-CCCCceEEEEe--cCC-----CEE
Q 009373 151 IDVLYGHTEAVLTVFVLA--S-AKLLFTSGY----DSIVRMWHLE--DGFSIASS-KPLGCTIRAVA--ADK-----KLL 213 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~--~-~~~l~sgs~----dg~v~iwd~~--~~~~~~~~-~~~~~~v~~~~--~~~-----~~l 213 (536)
+..+..| -.++++.|+. + +.+||.|+. .+.|.|-.+. +++.+..- ..|.-++..+. |+. ++|
T Consensus 38 iy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 4444433 4577888873 2 457888875 4566665543 44433322 34555555544 443 356
Q ss_pred EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE----e
Q 009373 214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC----L 286 (536)
Q Consensus 214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~----~ 286 (536)
++.+ ..+++|.+......... .. .-....-..+.++++++.| +++++.++|-|-+..|||++++.. .
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~-~~---~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVEL-QS---VLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred hccc--CeEEEEeccCcCCceeh-hh---hhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 5544 47999998643211100 00 0000112246679999999 789999999999999999998733 2
Q ss_pred EeeeccccEEEEeec---CCEEEEec-CCcEEEEeCCCCcEEEEEcc-cc-ccceEEEEEeCCC-CEEEEEcCC-CcEEE
Q 009373 287 KVLRHSDWVYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNG-AH-VGNTKSLARSHTG-DFLFTGGED-GAIHM 358 (536)
Q Consensus 287 ~~~~~~~~v~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~-~~~i~~l~~~~~~-~~l~tg~~d-g~i~i 358 (536)
+.+.|..+|..++.. -..+++.+ ||++++||++..+.-..+.+ +. ..+...++|++.. +++|+-..| ..|.|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 334599999999932 35677766 99999999998765554432 22 4577888898754 677776655 45999
Q ss_pred EEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373 359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 411 (536)
.|++.+. .++..+.+|.+.|++++|.| ..|++++.|..+.+||+....
T Consensus 271 LDiR~P~-----tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 271 LDIRVPC-----TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred EEecCCC-----cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 9999885 67899999999999999976 799999999999999998753
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=1.5e-15 Score=144.45 Aligned_cols=264 Identities=14% Similarity=0.193 Sum_probs=190.6
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373 160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 237 (536)
Q Consensus 160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 237 (536)
.|..++|-|||..|+.+. +..+.+||...|..+.++.+|...|.+++ .+|+.+++|+.|..|.+|+-.-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-------- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-------- 84 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc--------
Confidence 789999999999887765 45799999999999999999999998876 7999999999999999998522
Q ss_pred cCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCc
Q 009373 238 SGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSD 312 (536)
Q Consensus 238 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~ 312 (536)
.-. --..|.+.|.|+.|++ ..|++++-. ..-+|...... +...+....+.+.+ .+|.+++.|- +|+
T Consensus 85 ------EG~-LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGT 155 (1081)
T KOG1538|consen 85 ------EGI-LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGT 155 (1081)
T ss_pred ------cce-eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCce
Confidence 112 2347999999999966 567887753 45678765432 22333445556655 7899999998 899
Q ss_pred EEEEeCCCCcEEEEE-ccccccceEEEEEeCCC-----CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEE
Q 009373 313 VYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTG-----DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 386 (536)
Q Consensus 313 i~i~d~~~~~~~~~~-~~~~~~~i~~l~~~~~~-----~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 386 (536)
|.+-+....+.+..- +.|...+|.+++|+|.. ..+++.....++.+|.+.... +..-..-.-...|+
T Consensus 156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IGKDRALNFDPCCI 228 (1081)
T ss_pred EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-------ecccccCCCCchhh
Confidence 999865443333222 24577899999999964 478888888888888876542 21111112233566
Q ss_pred EE--cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE--ecCCEEEEecCCCeEE
Q 009373 387 AF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGADRIVCGGEEGIVR 462 (536)
Q Consensus 387 ~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~Dg~i~ 462 (536)
.+ ++.++..|+.|+.+++|.-+.. .. .+.......++++. |++++++.|+.||+|.
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fTR~Gv-rL-------------------GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFTRDGV-RL-------------------GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEeecCe-EE-------------------eeccccceeEEEEEEccCCceEEEEEccCeee
Confidence 66 4589999999999999975431 11 11222334555554 6667999999999999
Q ss_pred EEeCCc
Q 009373 463 IWNFSQ 468 (536)
Q Consensus 463 vW~~~~ 468 (536)
.|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 999764
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.3e-15 Score=130.85 Aligned_cols=252 Identities=20% Similarity=0.248 Sum_probs=177.3
Q ss_pred ccceeeeeCccccEEEEEEecCC-CEEEEEeCC-------CcEEEEECCCCc---------eeeeeC-CCCceEEE--Ee
Q 009373 148 RYSIDVLYGHTEAVLTVFVLASA-KLLFTSGYD-------SIVRMWHLEDGF---------SIASSK-PLGCTIRA--VA 207 (536)
Q Consensus 148 ~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~d-------g~v~iwd~~~~~---------~~~~~~-~~~~~v~~--~~ 207 (536)
.....+|..|.+.|..++-+|-. ++|+|+..+ -.+.||.+.... ++..+. .+-+.+.| +.
T Consensus 53 ~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~ 132 (370)
T KOG1007|consen 53 ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWE 132 (370)
T ss_pred hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEc
Confidence 34456888899999999999965 466665442 246799986432 222332 22234444 45
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCc
Q 009373 208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALL 283 (536)
Q Consensus 208 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~ 283 (536)
|++..+++-. |..|.+|++..+......+..+.. .+|....++-+| +++.+++ ..|+++..||+++.
T Consensus 133 Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s-------~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 133 PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES-------AEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM 203 (370)
T ss_pred CCCCeeEEec-cCceEEEEcccCcchheeeccccc-------ccccceecccccCCCCccceEEE-eCCCcEEEEEccch
Confidence 9888888766 889999999876532221111111 124555666677 4455655 45899999999999
Q ss_pred eEeEeee--ccccEEEEe--ecCC-EEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC-CEEEEEcCCCc
Q 009373 284 KCLKVLR--HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGA 355 (536)
Q Consensus 284 ~~~~~~~--~~~~v~~~~--~~~~-~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~ 355 (536)
++...++ |...|..+. |+.+ +|++++ ||.|++||.+..+ ++..+ .+|...|.++.|+|.. +++++|+.|..
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-PGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-CCCceEEEEEEecCccceEEEecCCCce
Confidence 9888887 888888888 5444 566666 7999999998765 45555 4799999999999954 68889999999
Q ss_pred EEEEEcccCccc------------------cc-----cceeeeccCCCCCeEEEEEc---CCeEEEEeCCCcEEEEECCc
Q 009373 356 IHMYEIINDCTE------------------AN-----VLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 356 i~iwd~~~~~~~------------------~~-----~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~ 409 (536)
|.+|....-..+ .. -..+.++..|...|++++|+ |-.+++-|.||.+.|=.+..
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 999976432211 01 12345678899999999996 46888999999998877654
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.4e-16 Score=137.58 Aligned_cols=247 Identities=17% Similarity=0.197 Sum_probs=171.0
Q ss_pred ceeeeeCccccEEEEEEec--CCCEEEEEeCCCcEEEEECCCCceeeee--CCCC-ceEEEEe--cCCCEEEEEe----C
Q 009373 150 SIDVLYGHTEAVLTVFVLA--SAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLG-CTIRAVA--ADKKLLVAGG----T 218 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~-~~v~~~~--~~~~~l~sg~----~ 218 (536)
.+..+++|...+..+.|.. ....+.+|+.||+|++||+.+......+ ..+. .+..++. ..++.+++|. .
T Consensus 62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s 141 (376)
T KOG1188|consen 62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRS 141 (376)
T ss_pred hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccC
Confidence 4678899999999999987 4678999999999999999877554433 3333 4556666 4677888875 3
Q ss_pred CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce----EeEeeec
Q 009373 219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK----CLKVLRH 291 (536)
Q Consensus 219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~ 291 (536)
+-.|.+||++.... ....-...|.+.|+++.| +++.|++||.||.|.+||+.... ...++++
T Consensus 142 ~A~v~lwDvR~~qq-----------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~ 210 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQ-----------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH 210 (376)
T ss_pred ceEEEEEEeccccc-----------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc
Confidence 67799999976531 122224579999999999 77999999999999999987542 3455667
Q ss_pred cccEEEEeec--C--CEEEEecCCcEEEEeCCCCcEEEEEccccc-----------cceEEEEEeC-CCCEEEEEcC-CC
Q 009373 292 SDWVYGLAPH--D--TTVASTSGSDVYIWDTNSGCLLTVVNGAHV-----------GNTKSLARSH-TGDFLFTGGE-DG 354 (536)
Q Consensus 292 ~~~v~~~~~~--~--~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~~i~~l~~~~-~~~~l~tg~~-dg 354 (536)
...|.++.+. + +....+...+..+|+++.+.....+..... ..+... .+| ++..++.++. -|
T Consensus 211 ~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n 289 (376)
T KOG1188|consen 211 GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSN 289 (376)
T ss_pred cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccC
Confidence 7778877733 2 334444489999999998876555432100 011111 123 3445555444 56
Q ss_pred cEEEEEcccCccccccceeeeccC-CCCCeEEEEEc--CCeEEEEeCCCcEEEEECC
Q 009373 355 AIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 355 ~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 408 (536)
...++-+...........+..+.+ |...|+++.|. ..+++||+.||.+.+|...
T Consensus 290 ~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 290 KGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 666666554322233345555666 77888899886 4899999999999999964
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.6e-15 Score=151.46 Aligned_cols=273 Identities=16% Similarity=0.155 Sum_probs=181.9
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee---CCccCEEEEEE----eCCEEEEEecCCeE
Q 009373 203 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW---EHEGPITSLAL----DLTRIYSGSWDMTV 275 (536)
Q Consensus 203 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~----~~~~l~s~s~dg~i 275 (536)
+..++|-...++++...-.|.|||.+.+.. ...+. .....|+.+.+ |...+++|+.||.|
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-------------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRL-------------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCce-------------eccccCCCCCCCccceeeeecccchhheeeeccCceE
Confidence 445556667788888888999999987642 11121 23457888888 44689999999999
Q ss_pred EEEeCC-----CceEeEeee----------ccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEE
Q 009373 276 RVWDRA-----LLKCLKVLR----------HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLA 339 (536)
Q Consensus 276 ~iwd~~-----~~~~~~~~~----------~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 339 (536)
+||+-- ..+.+.-.. ..+-+.... ..|.++++|.-..|+|||.........+..+....++++.
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 999632 222222221 112233333 4556666665688999999999988888766777788876
Q ss_pred EeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC--eEEEEEcC---CeEEEEeCCCcEEEEECCccccc
Q 009373 340 RSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP--VNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRS 413 (536)
Q Consensus 340 ~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~ 413 (536)
-+. .|+.+++|..||.|++||.+..... ..+...+.|... |..+.+.+ ..|++|+.||.|++||++.....
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc
Confidence 543 4689999999999999999987432 456777888887 99999964 57999999999999999973111
Q ss_pred CCCCCCCceeeEEeeCCCeeeec--cccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhh
Q 009373 414 GRPTSGKRVSRVIEVEPPQRMLH--GFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRR 491 (536)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
.... ...-. |.....+.++.+...+|||+. +.|+||++.....-... ...+. .......
T Consensus 1293 ~~~~--------------iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k--~n~~F--~~q~~gs 1353 (1387)
T KOG1517|consen 1293 TFLT--------------IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK--YNPGF--MGQRIGS 1353 (1387)
T ss_pred ccce--------------eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc--cCccc--ccCcCCC
Confidence 1000 00001 212333444445569999998 99999999864332211 11111 1122333
Q ss_pred hhccccccCCCCcceeEee
Q 009373 492 KLQTEMSSKGGRTDQCSVA 510 (536)
Q Consensus 492 ~~~~~~~~~g~~~~~~~~~ 510 (536)
..+++|+|.--++|+++.+
T Consensus 1354 ~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred cceeeecchhHhhhhccCC
Confidence 4788999998888877443
No 188
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=2.4e-15 Score=152.52 Aligned_cols=271 Identities=14% Similarity=0.192 Sum_probs=176.8
Q ss_pred CceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC
Q 009373 190 GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT 264 (536)
Q Consensus 190 ~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~ 264 (536)
|..+.+++.|...+..++ +++.++++||.||+|++|+...-... ........++..-.+.+.++.+ +++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------GGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC------cceeeeeEEEeccCCceEEEEeccCCC
Confidence 567777888887776554 56689999999999999998653210 0112233334334567777766 889
Q ss_pred EEEEEecCCeEEEEeCCCce-------EeEeee--ccccEEEEe----ecCC-EEEEec-CCcEEEEeCCCCcEEEEEcc
Q 009373 265 RIYSGSWDMTVRVWDRALLK-------CLKVLR--HSDWVYGLA----PHDT-TVASTS-GSDVYIWDTNSGCLLTVVNG 329 (536)
Q Consensus 265 ~l~s~s~dg~i~iwd~~~~~-------~~~~~~--~~~~v~~~~----~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~ 329 (536)
.++.++.||.|++.++.... +..... ..+.+.++. .... .++.+. .+.|..||+++.....+++.
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 99999999999999987521 111111 445566554 2233 555566 68999999998766555432
Q ss_pred -ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc-CCCCCeEEEEEcC-----CeEEEEe--CCC
Q 009373 330 -AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF-----PWLVSAA--GDG 400 (536)
Q Consensus 330 -~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~-----~~l~s~s--~dg 400 (536)
...+.|++++.+|.+.+++.|+..|.+.+||++-+ .++..+. ++..+|..+..++ ...++++ ..+
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC------ceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 24578999999999999999999999999999988 4555443 5567888888764 3444444 478
Q ss_pred cEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc-ccEEEEEecC-CEEEEecCCCeEEEEeCCchhhH
Q 009373 401 KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGA-DRIVCGGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 401 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~l~sg~~Dg~i~vW~~~~~~~~ 472 (536)
.|.+|++.++...........+..+....+.......+. ..+.+.-.++ ..+.+||.|+.||.||....+..
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 899999998755443322211111111011000000111 1122222333 38999999999999999876544
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.70 E-value=8.6e-16 Score=137.44 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=144.7
Q ss_pred EeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE-------eEeee-ccccEEEEeec---CCEEEEec-CCc
Q 009373 248 RLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-------LKVLR-HSDWVYGLAPH---DTTVASTS-GSD 312 (536)
Q Consensus 248 ~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~ 312 (536)
.+.||+++|..++| +...+++||.|.+|.||++..+.. +..+. |...|--+.++ .+.|++++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46699999999999 668999999999999999875432 33333 77777777733 34555544 999
Q ss_pred EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC--CeEEEEEc-
Q 009373 313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFE- 389 (536)
Q Consensus 313 i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~- 389 (536)
|.+||+.+|+.+.++. |...|+++.|+.+|.+|++.+.|..|+|||.+.+ ..+..-.+|.+ +...+-..
T Consensus 156 v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------TVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCC------cEeeecccccCCCcceeEEecc
Confidence 9999999999998885 9999999999999999999999999999999999 56666677765 33344333
Q ss_pred CCeEEEEe----CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeEE
Q 009373 390 FPWLVSAA----GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVR 462 (536)
Q Consensus 390 ~~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~ 462 (536)
+. +++.+ .+..+-+||..+...+.. ...+.+.++..+- -++++ ..++|-.|+.||
T Consensus 228 g~-i~tTGfsr~seRq~aLwdp~nl~eP~~----------------~~elDtSnGvl~P-FyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 228 GK-IFTTGFSRMSERQIALWDPNNLEEPIA----------------LQELDTSNGVLLP-FYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred Cc-eeeeccccccccceeccCcccccCcce----------------eEEeccCCceEEe-eecCCCCEEEEEecCCcceE
Confidence 35 54444 367899999887533211 1122233332222 23333 567888899999
Q ss_pred EEeCCchh
Q 009373 463 IWNFSQAF 470 (536)
Q Consensus 463 vW~~~~~~ 470 (536)
.|.+.+..
T Consensus 290 YyEit~d~ 297 (472)
T KOG0303|consen 290 YFEITNEP 297 (472)
T ss_pred EEEecCCC
Confidence 99998765
No 190
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=4.2e-15 Score=139.85 Aligned_cols=234 Identities=16% Similarity=0.241 Sum_probs=172.9
Q ss_pred eeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC----CEEE
Q 009373 194 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TRIY 267 (536)
Q Consensus 194 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~ 267 (536)
..+.+|.+.|.+++ |.|..|++|+.||+|+||.+.++. ++.+. ...+.|.|++|++ ..|+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------------cvr~~-~~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------------CVRTV-QFDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------------EEEEE-eecceeEEEEecCCCCceeEE
Confidence 34578999999887 889999999999999999998874 33222 2345788888833 2233
Q ss_pred EEecC--------------------------------CeEEEEeCCCc---e--EeEeeeccccEEEEe--ecCCEEEEe
Q 009373 268 SGSWD--------------------------------MTVRVWDRALL---K--CLKVLRHSDWVYGLA--PHDTTVAST 308 (536)
Q Consensus 268 s~s~d--------------------------------g~i~iwd~~~~---~--~~~~~~~~~~v~~~~--~~~~~l~~~ 308 (536)
++-.+ +.+..|.-... + .-..+.|...|..+. ..|.+|++.
T Consensus 460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 33222 22233322210 0 112344777777777 457898886
Q ss_pred c-C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373 309 S-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 384 (536)
Q Consensus 309 ~-d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 384 (536)
. + ..|.|+++...+...-|. ...+.|.++.|+|...+|++++. ..|+|||+... ..+..+......|.
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq------elvKkL~tg~kwiS 611 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ------ELVKKLLTGSKWIS 611 (733)
T ss_pred ccCCCcceEEEEecccccccCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHH------HHHHHHhcCCeeee
Confidence 6 2 569999998877665553 36678999999999999988865 56999999887 66777777788899
Q ss_pred EEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCe
Q 009373 385 SLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGI 460 (536)
Q Consensus 385 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~ 460 (536)
+++.+| +.|+.|+.|+.+..+|+.-. ..+-+.+.-|...+.++++++. ++++|+.||+
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldls------------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLS------------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccC------------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 999987 89999999999999999754 2334456778888999999888 8999999999
Q ss_pred EEEEeCC
Q 009373 461 VRIWNFS 467 (536)
Q Consensus 461 i~vW~~~ 467 (536)
+.|+.-.
T Consensus 674 v~Vfhg~ 680 (733)
T KOG0650|consen 674 VIVFHGM 680 (733)
T ss_pred EEEEeee
Confidence 9998643
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.3e-14 Score=140.10 Aligned_cols=291 Identities=13% Similarity=0.135 Sum_probs=200.8
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC--C--ceeeeeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--G--FSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~--~--~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 228 (536)
..|+..++|.+++|+++++|+|..||.|.+|.--. + .....++=| ...+++++++|.+|++|+..|.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999997432 1 223334445 44556667999999999999999999998
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeecc------------c-
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS------------D- 293 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------~- 293 (536)
+++. .-+..-.++|..+.+ +++..+....|..|.+....+.....++.+- +
T Consensus 282 T~~k--------------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 282 TGKK--------------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred CCCc--------------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 8742 224456788999999 7888888889999999987666554444311 1
Q ss_pred -cEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcc----------ccccceEEEEEeCCCCEEEEEcC--------C
Q 009373 294 -WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG----------AHVGNTKSLARSHTGDFLFTGGE--------D 353 (536)
Q Consensus 294 -~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~----------~~~~~i~~l~~~~~~~~l~tg~~--------d 353 (536)
...++.|..+.++-.+ .+.|.+||+-+.+.+..+.. .+...+++++.+..|.+++|+-. |
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 1233446444444444 89999999998877765531 12335778888888999988642 3
Q ss_pred C--cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373 354 G--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 427 (536)
Q Consensus 354 g--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 427 (536)
| .+++|..........+ ......+|...+....+.+ ...++++.||.+++|-+............-
T Consensus 428 ~e~~LKFW~~n~~~kt~~L-~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W------- 499 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFIL-NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNW------- 499 (792)
T ss_pred ceEEEEEEEEcCCcceeEE-EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccce-------
Confidence 3 4788987665322111 1233457888777777743 489999999999999996654433322211
Q ss_pred eCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCch
Q 009373 428 VEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 428 ~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~ 469 (536)
.+...-+-|..++.+..|+++ .+++.|.|++|.+||..+.
T Consensus 500 --~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 500 --TCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred --EEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 111111224455666666665 7888888999999999984
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=2.1e-15 Score=128.02 Aligned_cols=241 Identities=17% Similarity=0.230 Sum_probs=168.1
Q ss_pred eeeeeCCCCceEEEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE-eCCEEEE
Q 009373 192 SIASSKPLGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL-DLTRIYS 268 (536)
Q Consensus 192 ~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~-~~~~l~s 268 (536)
+...+++|...+.++.+ .+.+|++|...|.|++|++.+.. ....+. .|...|+.+.. .++.+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r-------------~~~~~r~~g~~~it~lq~~p~d~l~t 72 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTER-------------DLPLIRLFGRLFITNLQSIPNDSLDT 72 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCc-------------cchhhhhhccceeeceeecCCcchhh
Confidence 34456688888888774 35579999999999999997753 222333 45677888877 5588999
Q ss_pred EecCCeEEEEeCCCceEeEe--------------e-----------e-----------------------------cccc
Q 009373 269 GSWDMTVRVWDRALLKCLKV--------------L-----------R-----------------------------HSDW 294 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~--------------~-----------~-----------------------------~~~~ 294 (536)
-+.|+.+.+|++.-+..+.. + . ..+.
T Consensus 73 qgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 73 QGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred cCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence 99999999998754211100 0 0 0112
Q ss_pred EEEEe---ec-CC-EEEEec-CCcEEEEeCCCCcEEEEEc---------cccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373 295 VYGLA---PH-DT-TVASTS-GSDVYIWDTNSGCLLTVVN---------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 359 (536)
Q Consensus 295 v~~~~---~~-~~-~l~~~~-d~~i~i~d~~~~~~~~~~~---------~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw 359 (536)
+++.. .. .. ++++|. +|.+.+||+.++..+..++ ..|..++.++.+.+.-..=++|+.+..+..|
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 23333 11 22 344555 7999999999984333322 2588899999999876667788888889999
Q ss_pred EcccCccccccceeeeccCCCCCeEEEEE--cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc
Q 009373 360 EIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG 437 (536)
Q Consensus 360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (536)
++......-......++ ....|..+.. +.+.++++++|+.|+||..++. .+...+.-
T Consensus 233 Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-------------------~pLAVLky 291 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-------------------NPLAVLKY 291 (323)
T ss_pred eeccccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccC-------------------Cchhhhhh
Confidence 98765222111222222 2334555555 5689999999999999999984 45566778
Q ss_pred ccccEEEEEecCC--EEEEecCCCeEEEEeC
Q 009373 438 FECNLLSVDIGAD--RIVCGGEEGIVRIWNF 466 (536)
Q Consensus 438 ~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~ 466 (536)
|...|.+++|+++ .+|++|.|++|.+|++
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8888999998887 9999999999999986
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=2.8e-13 Score=118.45 Aligned_cols=228 Identities=18% Similarity=0.263 Sum_probs=162.6
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC--ceEEEEecCCCEEE-EEeCC------CcEEEEEcccCc
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--CTIRAVAADKKLLV-AGGTD------GFIHCWRAVEVL 231 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~-sg~~d------g~i~vwd~~~~~ 231 (536)
..+++|+.|...++.|..+| .+||+.+.-+.....+.+. ..+..+-...++|+ +|+.+ ..|.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-- 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-- 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc--
Confidence 44589999999888888766 8999987644332222222 22223334444443 44433 5699999321
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCC-CceEeEeee---ccccEEEEeec--CCEE
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA-LLKCLKVLR---HSDWVYGLAPH--DTTV 305 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~---~~~~v~~~~~~--~~~l 305 (536)
..++.++ ....+|.++.+..+.+++.- .+.|.+|... ..+.+..+. .+....++.|. ..+|
T Consensus 85 -----------~~~i~el-~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 85 -----------ERCIIEL-SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred -----------CcEEEEE-EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 1233333 45789999999999888776 4789999987 566666665 34556677743 3344
Q ss_pred EEec--CCcEEEEeCCCCcE--EEEEccccccceEEEEEeCCCCEEEEEcCCCc-EEEEEcccCccccccceeeeccC--
Q 009373 306 ASTS--GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIP-- 378 (536)
Q Consensus 306 ~~~~--d~~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~-- 378 (536)
+.-+ -|.|+|-|+...+. ...+ .+|.+.|.|++.+.+|..+||+|..|+ |||||..++ ..+..+..
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I-~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g------~~l~E~RRG~ 224 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSII-NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG------TLLQELRRGV 224 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEE-EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC------cEeeeeecCC
Confidence 4444 48999999987665 3444 479999999999999999999999998 899999999 55555543
Q ss_pred CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccc
Q 009373 379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 411 (536)
....|.+|+|+| .+|+++|..|+|.|+.++...
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 356899999997 699999999999999998643
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=4.4e-14 Score=125.81 Aligned_cols=228 Identities=17% Similarity=0.243 Sum_probs=173.5
Q ss_pred EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCC--eEEEEeCCCc
Q 009373 206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM--TVRVWDRALL 283 (536)
Q Consensus 206 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg--~i~iwd~~~~ 283 (536)
+..+...|..|+.||. ++++.+.-. .........-.|..+-|...+++..+.+. .+++.+++.+
T Consensus 13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~-------------k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDGY-KIFSCSPFE-------------KCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred eccceeEEEccCCCce-eEEecCchH-------------HhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC
Confidence 3455667888888874 466553321 11111222335666677888777766554 4999999999
Q ss_pred eEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccc--cccceEEEEEeCCCCEEEEEc--CCCcEEEE
Q 009373 284 KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGA--HVGNTKSLARSHTGDFLFTGG--EDGAIHMY 359 (536)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~tg~--~dg~i~iw 359 (536)
..+..+.....|.++..+.+.++++-...|+|||+++.+.+.++..- +...+.++.+++.+.+++.-+ ..|.|.+|
T Consensus 79 ~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred ceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 99999999999999999999888888777999999999999888643 556677777777777888643 36889999
Q ss_pred EcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCc-EEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373 360 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK-LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH 436 (536)
Q Consensus 360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (536)
|..+- .++..+..|.+++.+++|++ .+|||+|..|+ |+|+.+.++++..++.-|.
T Consensus 159 d~~nl------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---------------- 216 (391)
T KOG2110|consen 159 DTINL------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---------------- 216 (391)
T ss_pred Ecccc------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----------------
Confidence 99888 78888899999999999975 79999999997 7999998876554332221
Q ss_pred cccccEEEEEecCC--EEEEecCCCeEEEEeCCchh
Q 009373 437 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAF 470 (536)
Q Consensus 437 ~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~ 470 (536)
....+.+++|+++ +|++.|..++|.+|.++...
T Consensus 217 -~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 217 -YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred -eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 1355666776655 99999999999999998644
No 195
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.67 E-value=9e-15 Score=128.81 Aligned_cols=245 Identities=16% Similarity=0.214 Sum_probs=180.6
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCce---eeeeCCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFS---IASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~-~~~~~---~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw 225 (536)
..+.++||.+.|+....-|...-+++.+.|.++|||-- +.++. +....+....+.....+...|+.|-.+|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 35678999999999999999999999999999999954 44443 333445556666777888999999999999888
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCC
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDT 303 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 303 (536)
.+.... +..........|...|..+-| ....+++.+.|..+.---.+.+..+..+.......++..+-.
T Consensus 96 s~sedf---------nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 96 ALSEDF---------NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL 166 (404)
T ss_pred Ehhhhh---------hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE
Confidence 765432 223345556789999999999 668899999998876555555554443332222222221111
Q ss_pred EEEEec-CCcEEEEe--CCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373 304 TVASTS-GSDVYIWD--TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 380 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 380 (536)
+...|. .|.|..-. ...-.++.++. +|.+.+++++|.|....|++|..|..+.+||+.... .....+.+|.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-----g~~~el~gh~ 240 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-----GTAYELQGHN 240 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-----ceeeeeccch
Confidence 334444 45554433 33445666664 799999999999999999999999999999997663 3566778999
Q ss_pred CCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
..|..+..-+ ..+++++.||.|.+||++.
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999998854 7999999999999999864
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.7e-15 Score=140.45 Aligned_cols=214 Identities=18% Similarity=0.268 Sum_probs=152.3
Q ss_pred ccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----------ceeeeeCCCCceEEEE--ecCCCEEEE
Q 009373 148 RYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRAV--AADKKLLVA 215 (536)
Q Consensus 148 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~--~~~~~~l~s 215 (536)
..++.+|++|.++|.|+++.+++..+++|+-||+|+.|++... .....+.+|...++.+ +.....|++
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 3578999999999999999999999999999999999976522 2234567888888554 467778999
Q ss_pred EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCC---EEEEEecCCeEEEEeCCCceEeEeeec-
Q 009373 216 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLT---RIYSGSWDMTVRVWDRALLKCLKVLRH- 291 (536)
Q Consensus 216 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~- 291 (536)
++.||+++.|+.....+. .+....-.+.-.++.+... ..++...-+.--++++.....+..+..
T Consensus 414 cs~DgTvr~w~~~~~~~~------------~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~ 481 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESPC------------TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS 481 (577)
T ss_pred ecCCceEEeeccCCcCcc------------ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc
Confidence 999999999998655321 1111122234455666332 223332333333444444444444431
Q ss_pred -------cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373 292 -------SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361 (536)
Q Consensus 292 -------~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~ 361 (536)
...+.-+. +...+.+++. +..|+++|..+++.+.... .|...++++++.|+|.+|++|+.||.+++|.+
T Consensus 482 ~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 482 ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-eccceecceeecCCCceEEeecCCceeehhhc
Confidence 12233333 6666777777 8999999999999998875 69999999999999999999999999999998
Q ss_pred ccCccccccceeeeccCCC
Q 009373 362 INDCTEANVLLVATWIPHT 380 (536)
Q Consensus 362 ~~~~~~~~~~~~~~~~~h~ 380 (536)
... .++.....|.
T Consensus 561 d~k------~~~~es~~~r 573 (577)
T KOG0642|consen 561 DVK------TCVLESTAHR 573 (577)
T ss_pred cch------heeecccccc
Confidence 776 4555555553
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=8.5e-14 Score=121.65 Aligned_cols=232 Identities=14% Similarity=0.092 Sum_probs=175.0
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 226 (536)
..+.--..+|+|.+|++|...+|.+-....|.||.....+ ...++..|...+..+. |..+.|++++.|..-++|.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 3444456899999999999999999999999999987654 5677888888776655 8899999999999999998
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe-----eeccccEEEEe
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-----LRHSDWVYGLA 299 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~ 299 (536)
...+ ...++...+..++...+++.| ..+.|++||.-+.|.||-++....-.. ..+...|.+++
T Consensus 84 ~~~~----------~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 84 QPSG----------GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred cCCC----------CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 7433 336677788899999999999 678999999999999998765443321 12667889998
Q ss_pred --ecCCEEEEec-CCcEEEEeCC-----C-------------CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373 300 --PHDTTVASTS-GSDVYIWDTN-----S-------------GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM 358 (536)
Q Consensus 300 --~~~~~l~~~~-d~~i~i~d~~-----~-------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i 358 (536)
|++-++++|+ |+.+++|..- . |+++..+. ...+.+..+.|+|+|..|+-.+.|+.+.+
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence 7788888888 9999998542 1 12223332 35678999999999999999999999999
Q ss_pred EEcccCccccccceeeeccCCCCCeEEEEE-cCCeEEEEeCC
Q 009373 359 YEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGD 399 (536)
Q Consensus 359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d 399 (536)
=|...+.+ .+.......-+..++.| +.+.++.++.|
T Consensus 233 ~da~~p~~-----~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 233 VDAAGPSE-----RVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred eecCCCch-----hccchhhccCCceeeEeecCCceeecCCC
Confidence 99876631 22222223356677777 34445555544
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=1.3e-14 Score=138.27 Aligned_cols=232 Identities=13% Similarity=0.176 Sum_probs=170.4
Q ss_pred cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373 149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd 226 (536)
..+++++||.+.|+|++|+.||..+|+|+.|..|.+|+-+-...++. .|+..|.|++ |-...|++++.+ ..-+|.
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY--SH~D~IQCMsFNP~~h~LasCsLs-dFglWS 120 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY--SHNDAIQCMSFNPITHQLASCSLS-DFGLWS 120 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee--ccCCeeeEeecCchHHHhhhcchh-hccccC
Confidence 35789999999999999999999999999999999999764444443 4566666655 667788888765 456787
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe-
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA- 299 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~- 299 (536)
.+... +. -......|.+.+| ||.+++.|-.||+|.+-+-. ++....+. ...+|.+++
T Consensus 121 ~~qK~--------------V~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 121 PEQKS--------------VS-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred hhhhh--------------HH-hhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEe
Confidence 64321 11 1122456777888 88999999999999998653 44433333 567888887
Q ss_pred -ec-----CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373 300 -PH-----DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 372 (536)
Q Consensus 300 -~~-----~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 372 (536)
|. ...+++.. +.++.+|.+. |+.+..-. ...-...|+.+.++|.+++.|+.|+.+++|- +.+ ..
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G------vr 255 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG------VR 255 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEEEEccCCCceEEEe-ecC------eE
Confidence 22 23455555 6677777764 33333221 2344567899999999999999999999996 444 46
Q ss_pred eeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373 373 VATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 373 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 408 (536)
+.++......|++++..| .+++.|+.||+|..|++-
T Consensus 256 LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 256 LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 677767788999999987 699999999999999874
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=9.1e-13 Score=126.60 Aligned_cols=267 Identities=10% Similarity=0.108 Sum_probs=160.2
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eeeeeCC-CCceEEEEecCCCEEEEEe-CCCcEEEEEccc-CccceecccCcccccce
Q 009373 173 LFTSGYDSIVRMWHLED-GF--SIASSKP-LGCTIRAVAADKKLLVAGG-TDGFIHCWRAVE-VLPHLFDISGSEKQNTQ 246 (536)
Q Consensus 173 l~sgs~dg~v~iwd~~~-~~--~~~~~~~-~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~ 246 (536)
+++...|+.|++|++.+ ++ .+..+.. .....++++|++++|++++ .++.|.+|++.. +. ....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-----------l~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-----------LTFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-----------eEEe
Confidence 44457799999999964 33 4444432 2234467789999887764 578899999862 21 1111
Q ss_pred EEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCc----eEeEeeeccccEE--EEeecCCEEEEec--CCcEEE
Q 009373 247 FRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALL----KCLKVLRHSDWVY--GLAPHDTTVASTS--GSDVYI 315 (536)
Q Consensus 247 ~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~----~~~~~~~~~~~v~--~~~~~~~~l~~~~--d~~i~i 315 (536)
... ...+....+++ +++++++++ .++.|.+|++.+. +....+....... .+.|++++++++. ++.|.+
T Consensus 74 ~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 74 AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 111 12234567777 567777766 4889999998642 2222222222223 3558888886665 689999
Q ss_pred EeCCCCcEEEE-----EccccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccccccceeeeccC------CCCCe
Q 009373 316 WDTNSGCLLTV-----VNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIP------HTGPV 383 (536)
Q Consensus 316 ~d~~~~~~~~~-----~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v 383 (536)
||+.+...+.. ...........+.|+|+|++++++.. ++.|.+|++..... ....+..+.. +....
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccc
Confidence 99987432211 11112345678999999999988876 89999999974211 1122222211 11223
Q ss_pred EEEEEcC--CeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEec-CCC
Q 009373 384 NSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG-EEG 459 (536)
Q Consensus 384 ~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg 459 (536)
..+.++| ++++++.. ++.|.+|++........ ... ....+....-+.+++++++|+++. .++
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~-----~~~---------~~~~~~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS-----FEG---------HQPTETQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE-----EeE---------EEeccccCCceEECCCCCEEEEEEccCC
Confidence 4577876 57887754 78999999865211100 000 000111222346677788776555 599
Q ss_pred eEEEEeCC
Q 009373 460 IVRIWNFS 467 (536)
Q Consensus 460 ~i~vW~~~ 467 (536)
+|.+|+++
T Consensus 297 ~v~v~~~~ 304 (330)
T PRK11028 297 HISVYEID 304 (330)
T ss_pred cEEEEEEc
Confidence 99999885
No 200
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.61 E-value=3.2e-14 Score=128.06 Aligned_cols=230 Identities=22% Similarity=0.217 Sum_probs=158.7
Q ss_pred CCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECC--------C-
Q 009373 119 APLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--------D- 189 (536)
Q Consensus 119 ~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~--------~- 189 (536)
..+..++.+.++|+....+-.-.. ..-.-...|..|...|+++.|+|+|.+||||+.+|.|.+|... +
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred eecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence 455566777888986543311100 0112356788999999999999999999999999999999865 2
Q ss_pred -------CceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEE
Q 009373 190 -------GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 260 (536)
Q Consensus 190 -------~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 260 (536)
....+.+.+|...++.++ +++.++++|+.|.++++||+..|. ....+.+|...|..++
T Consensus 106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-------------l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-------------LLAILDDHEHYVQGVA 172 (434)
T ss_pred hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-------------eEeeccccccccceee
Confidence 123455677888887655 999999999999999999998764 4445556666777766
Q ss_pred EeC--CEEEEEecCCeEEEEeCCCceEeE---------------------------------------------------
Q 009373 261 LDL--TRIYSGSWDMTVRVWDRALLKCLK--------------------------------------------------- 287 (536)
Q Consensus 261 ~~~--~~l~s~s~dg~i~iwd~~~~~~~~--------------------------------------------------- 287 (536)
||+ .++++-+.|...+.+.+...+.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 633 445555554433333221110000
Q ss_pred ------------------------eee-ccccEEEEe--------------------ecCCEEEEecCCcEEEEeCCCCc
Q 009373 288 ------------------------VLR-HSDWVYGLA--------------------PHDTTVASTSGSDVYIWDTNSGC 322 (536)
Q Consensus 288 ------------------------~~~-~~~~v~~~~--------------------~~~~~l~~~~d~~i~i~d~~~~~ 322 (536)
.+. ...++..+. |.+-.++.++.+.|.+||.++-.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~ 332 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE 332 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence 000 000000000 22335666778899999999999
Q ss_pred EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 323 ~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
++....+-|-..|+.++|+++|..|+..+.||.+.+-.+...
T Consensus 333 P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 333 PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 888887789999999999999999999999999888877665
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.8e-14 Score=128.48 Aligned_cols=191 Identities=21% Similarity=0.220 Sum_probs=140.5
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccC
Q 009373 162 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG 239 (536)
Q Consensus 162 ~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 239 (536)
.+++|+++|..|++|+.||++|||+..+...+.....|...|-++ +||++.|++-+.| ..+||+.+++..... ...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~-~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR-KTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh-cCC
Confidence 688999999999999999999999998888888888888877655 5999999999999 999999988732110 000
Q ss_pred cccccceEEeeCCccCEEEEEE--eC---CE-E-EEEecCCeEEEEeCCCceE------eEeeeccccEEEEe--ecCCE
Q 009373 240 SEKQNTQFRLWEHEGPITSLAL--DL---TR-I-YSGSWDMTVRVWDRALLKC------LKVLRHSDWVYGLA--PHDTT 304 (536)
Q Consensus 240 ~~~~~~~~~~~~h~~~v~~l~~--~~---~~-l-~s~s~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~--~~~~~ 304 (536)
.+-.-....+.| ++ .+ + +....-+.|+.||+....- .+.+.....|.+++ .+|++
T Consensus 226 ----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 226 ----------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred ----------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 011112233334 22 11 2 2223334566655432221 11112334566655 99999
Q ss_pred EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
++.|+ +|.|.+++..+.+.+..++..|..-|+.+.|+|+.+++++-+.|....+..+.-.
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 99999 9999999999999999999999999999999999999999999999998887653
No 202
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.58 E-value=5.5e-14 Score=133.23 Aligned_cols=236 Identities=17% Similarity=0.170 Sum_probs=155.5
Q ss_pred EecCCCEEEE--EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeC
Q 009373 206 VAADKKLLVA--GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDR 280 (536)
Q Consensus 206 ~~~~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~ 280 (536)
++.+...+++ .+..|.|-||++...... ..-...-.-....|+++.| |...|+.++.||.|++|.+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrL---------PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRL---------PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCC---------CcccccccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 3344444444 456789999998654210 0011111123467999999 6689999999999999998
Q ss_pred CCce-------EeEeee-ccccEEEEeec---CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE
Q 009373 281 ALLK-------CLKVLR-HSDWVYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF 348 (536)
Q Consensus 281 ~~~~-------~~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 348 (536)
..+. ....+. |...|+++..+ ...|++++ |.+|++||+++++....+. +|.+.|..++|+|+|+.++
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCccee
Confidence 6542 333444 88889998843 45666666 9999999999999888885 7999999999999999999
Q ss_pred EEcCCCcEEEEEcccCccccccceeeeccCCC-CCeEEEEE--cCCeEEEEeCC----CcEEEEECCcccccCCCCCCCc
Q 009373 349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAF--EFPWLVSAAGD----GKLSLIDVRKLLRSGRPTSGKR 421 (536)
Q Consensus 349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~ 421 (536)
+.+.||+|++|+.+... .+++.-.+.. ..-..|.| ++.++++.+.| ..|.+||..+.... .
T Consensus 737 tVcKDg~~rVy~Prs~e-----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~-------p 804 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSRE-----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLR-------P 804 (1012)
T ss_pred eeecCceEEEeCCCCCC-----CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCC-------c
Confidence 99999999999998874 2333322211 11223334 56777777765 46788887663200 0
Q ss_pred eeeEEeeCCCeeeecc-ccccEEEEEecCC-EEEEecCCCeEEEEeCCchhh
Q 009373 422 VSRVIEVEPPQRMLHG-FECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFE 471 (536)
Q Consensus 422 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~ 471 (536)
+. ...+.- -..-+-..+++.. .++||-.|..|.+|++-....
T Consensus 805 l~--------t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 805 LY--------TQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ce--------eeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 00 000000 0011222233333 789999999999999876544
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=3e-13 Score=126.09 Aligned_cols=213 Identities=16% Similarity=0.195 Sum_probs=148.0
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee------eeeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEcc
Q 009373 160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI------ASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~------~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~~ 228 (536)
.++...++-.|++|+-.- ...+.+|+...+..+ ..+.+....+.++. +.+--++.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 344444554566655432 245788887643221 12233334444442 667788999999999998864
Q ss_pred cCccc-eecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCC--------------ceEeEeee
Q 009373 229 EVLPH-LFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRAL--------------LKCLKVLR 290 (536)
Q Consensus 229 ~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~ 290 (536)
..... ++. . ...-....|+++.| +...++.+-.+|.+++||..- +.......
T Consensus 204 ~~~~sklfn--------e--~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t 273 (636)
T KOG2394|consen 204 NFEVSKLFN--------E--ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT 273 (636)
T ss_pred hhHHHHhhh--------h--cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee
Confidence 42100 000 0 00012378999999 567888889999999997531 11111111
Q ss_pred ---------------ccccEEE--EeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC
Q 009373 291 ---------------HSDWVYG--LAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 352 (536)
Q Consensus 291 ---------------~~~~v~~--~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~ 352 (536)
..+.|.. ++++|++|++.+ ||.++|||..+.+.+..++ ..-+...|++|+|||++|++|++
T Consensus 274 ~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 274 SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCC
Confidence 1223333 348999999999 9999999999988887775 36778999999999999999999
Q ss_pred CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373 353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
|..|.||.+... +.+..-.+|.+.|+.++|+|
T Consensus 353 DDLVtVwSf~er------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 353 DDLVTVWSFEER------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEEEeccc------eEEEeccccccceeeEeecc
Confidence 999999999988 78888899999999999998
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.7e-13 Score=134.38 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=155.5
Q ss_pred ccCCccceeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCce--eeeeCCCCceEEEEecCCCEEEEEe-
Q 009373 144 TFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFS--IASSKPLGCTIRAVAADKKLLVAGG- 217 (536)
Q Consensus 144 ~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sg~- 217 (536)
...|.. .+.+..|...|.+.+|+|+|+.|+.++.+ ..|++||+.+++. +..+.++.. ..+++|||+.|+.++
T Consensus 190 d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 190 DYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASS 267 (429)
T ss_pred CCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEe
Confidence 344443 46678889999999999999999987754 3699999988753 444444433 357889999888764
Q ss_pred CCCcEEEEE--cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCc-eEeEeeec
Q 009373 218 TDGFIHCWR--AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALL-KCLKVLRH 291 (536)
Q Consensus 218 ~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~ 291 (536)
.+|.+.+|. +.++ ....+..+...+.+..| +++.|+.++ .+|...||++... .....+.+
T Consensus 268 ~~g~~~Iy~~d~~~~--------------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~ 333 (429)
T PRK01742 268 KDGVLNIYVMGANGG--------------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG 333 (429)
T ss_pred cCCcEEEEEEECCCC--------------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC
Confidence 688766664 4333 23345566667778888 777666554 5788888876432 22222333
Q ss_pred cccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373 292 SDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 371 (536)
Q Consensus 292 ~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 371 (536)
......++|+++.++..+...+.+||+.+++...... .+ ....+.|+|+|++|+.++.+|.+.+|++.+... .
T Consensus 334 ~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G----~ 406 (429)
T PRK01742 334 RGYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG----R 406 (429)
T ss_pred CCCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC----C
Confidence 3222345699999988876667779999887653322 22 235678999999999999999999888743210 4
Q ss_pred eeeeccCCCCCeEEEEEcCC
Q 009373 372 LVATWIPHTGPVNSLAFEFP 391 (536)
Q Consensus 372 ~~~~~~~h~~~v~~l~~~~~ 391 (536)
....+..|.+.+...+|+|.
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 56667788888888999873
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=3.1e-15 Score=145.85 Aligned_cols=260 Identities=19% Similarity=0.226 Sum_probs=190.6
Q ss_pred ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEE
Q 009373 191 FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI 266 (536)
Q Consensus 191 ~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 266 (536)
+.++.+.+|...|+|.. ..|.++++|+.|..++||..+++. +.....||.+.|+.++. +.-++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------------~lAs~rGhs~ditdlavs~~n~~i 247 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------------CLASCRGHSGDITDLAVSSNNTMI 247 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------------hhccCCCCccccchhccchhhhhh
Confidence 34556688998888876 568899999999999999987753 67788999999999999 55678
Q ss_pred EEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEE----ccccccceEEEEEe
Q 009373 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVV----NGAHVGNTKSLARS 341 (536)
Q Consensus 267 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~i~~l~~~ 341 (536)
+++|.|..|++|.+.++.++..+. |.+.|++++..... .++.||++++||.+- .+.... ......-+-++.|.
T Consensus 248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-cCCCCCceEeccccc-cccccCCCCCCcccccceeeeecc
Confidence 999999999999999999999887 99999999844443 334489999999982 111111 11123456677788
Q ss_pred CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc---CCeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373 342 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTS 418 (536)
Q Consensus 342 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 418 (536)
..+..++||+.|+.-..|.+.... .+...+.-+.++ ..+.+++-.+-.+++|++.++.
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~------- 386 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQLA------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ------- 386 (1113)
T ss_pred ccccccccccCCcccccchhhHhh------------hhccceEEEeccccccccceeeeeeeEeeeeecccch-------
Confidence 888999999999999888764431 122222222222 2567777778899999998752
Q ss_pred CCceeeEEeeCCCeeeeccccccEEEEEecC---CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcc
Q 009373 419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT 495 (536)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (536)
....+.+|...+..+.+++ ....+++.||...|||+-.|..++..... +-....-
T Consensus 387 ------------l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g----------h~kl~d~ 444 (1113)
T KOG0644|consen 387 ------------LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG----------HGKLVDG 444 (1113)
T ss_pred ------------hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc----------cceeecc
Confidence 2233456666666666444 47789999999999999998877654421 3345667
Q ss_pred ccccCCCCcce
Q 009373 496 EMSSKGGRTDQ 506 (536)
Q Consensus 496 ~~~~~g~~~~~ 506 (536)
+||+||..++.
T Consensus 445 kFSqdgts~~l 455 (1113)
T KOG0644|consen 445 KFSQDGTSIAL 455 (1113)
T ss_pred ccCCCCceEec
Confidence 89999988875
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.1e-14 Score=127.69 Aligned_cols=189 Identities=24% Similarity=0.294 Sum_probs=140.0
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373 201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW 278 (536)
Q Consensus 201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iw 278 (536)
..++++..+|..+++|+.||++++|++... ........|.+.|.++.| |++.|++.+.| ..+||
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSM-------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcc-------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEE
Confidence 367788899999999999999999997543 345556789999999999 88899999999 99999
Q ss_pred eCCCceEeEeee--ccccEEE---EeecC---CEE-EEec--CCcEEEEeCCCCcE-----EEEEccccccceEEEEEeC
Q 009373 279 DRALLKCLKVLR--HSDWVYG---LAPHD---TTV-ASTS--GSDVYIWDTNSGCL-----LTVVNGAHVGNTKSLARSH 342 (536)
Q Consensus 279 d~~~~~~~~~~~--~~~~v~~---~~~~~---~~l-~~~~--d~~i~i~d~~~~~~-----~~~~~~~~~~~i~~l~~~~ 342 (536)
+.+++..+.... ..++..+ +..++ .+. ++.. .+.|+.||+....- .+... .....|++++.++
T Consensus 213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD 291 (398)
T ss_pred EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC
Confidence 999997666655 2222221 11222 222 3322 36677776644321 11111 2345799999999
Q ss_pred CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 343 TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 343 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
+|++++.|+.||.|-|++..+.+ .....-..|...|+.+.|+| +++++.+.|..+.|..+.-
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq-----~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQ-----RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceee-----eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999988773 23344568999999999998 6899999998888887754
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.8e-14 Score=132.19 Aligned_cols=229 Identities=20% Similarity=0.252 Sum_probs=155.0
Q ss_pred ceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe----ecCCEEEEec-CCcEEE
Q 009373 245 TQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTS-GSDVYI 315 (536)
Q Consensus 245 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~-d~~i~i 315 (536)
....+.||++-|.++.| +|.+|++||.|-.+.|||.-..+.+..+. |...|.++. .+++.+++|. |..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44568899999999999 88999999999999999999888888887 899999987 3566777777 899999
Q ss_pred EeCCCC----------cEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccccc----ceeeeccCCC
Q 009373 316 WDTNSG----------CLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANV----LLVATWIPHT 380 (536)
Q Consensus 316 ~d~~~~----------~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~----~~~~~~~~h~ 380 (536)
||+... +....+ ..|...|..++..|++ ..+.++++||+|+-||++....-..- ..+..+.+.-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999852 222333 3588899999999988 78999999999999999885321110 1111111222
Q ss_pred CCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCC---------CceeeEEeeCCCeeeecc----ccccEEE
Q 009373 381 GPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSG---------KRVSRVIEVEPPQRMLHG----FECNLLS 444 (536)
Q Consensus 381 ~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~v~~ 444 (536)
-...++..+| .+|++|+.|-..++||.+...+....... .++.-+. ... .+...+ ....++.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~h-lkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGH-LKNSQGNLDRYITCCTY 278 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-Ccc-ccCcccccccceeeeEE
Confidence 3456777775 79999999999999997654333221110 0010000 000 001111 0111334
Q ss_pred EEecCC---EEEEecCCCeEEEEeCCchhhHHHHHH
Q 009373 445 VDIGAD---RIVCGGEEGIVRIWNFSQAFEIERRAR 477 (536)
Q Consensus 445 ~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~~~~~ 477 (536)
+.|+++ .|++-+.+ .|+++|+..++.+.....
T Consensus 279 vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred EEECCCCcEEEEeeCCe-EEEEEeecCCCCceeecC
Confidence 445554 77777765 699999998876655443
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=1.8e-14 Score=131.67 Aligned_cols=224 Identities=16% Similarity=0.233 Sum_probs=171.6
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEe
Q 009373 201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWD 279 (536)
Q Consensus 201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd 279 (536)
..-...+.+|..++.|+.-|.|..+|+.++. ....+ .-...|.++.| ....+++......+.|||
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-------------L~~Ei-~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD 197 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-------------LHFEI-NVMETVRDVTFLHNEQFFAVAQKKYVYVYD 197 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccce-------------eeeee-ehhhhhhhhhhhcchHHHHhhhhceEEEec
Confidence 3345566788899999999999999987753 11122 23456888888 555566666778999999
Q ss_pred CCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373 280 RALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356 (536)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i 356 (536)
- .|..++.+.....|..+. |.--+|++++ .|-++.-|+.+|+.+..+.. ..+.+..++-+|-...+-+|...|+|
T Consensus 198 ~-~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 198 N-NGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred C-CCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceE
Confidence 5 466777777667777776 7777778877 68999999999999988864 66788889999999999999999999
Q ss_pred EEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeee
Q 009373 357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 434 (536)
Q Consensus 357 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (536)
.+|..... .++..+..|.++|.+|++++ .|++|++.|..++|||+++..++...
T Consensus 276 SlWSP~sk------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~------------------ 331 (545)
T KOG1272|consen 276 SLWSPNSK------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY------------------ 331 (545)
T ss_pred EecCCCCc------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee------------------
Confidence 99998887 67777889999999999975 89999999999999999986433211
Q ss_pred eccccccEEEEEecCCEEEEecCCCeEEEEeC
Q 009373 435 LHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 466 (536)
Q Consensus 435 ~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~ 466 (536)
... .....++++..-+++.|....|.||.=
T Consensus 332 ~tp--~~a~~ls~SqkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 332 RTP--HPASNLSLSQKGLLALSYGDHVQIWKD 361 (545)
T ss_pred ecC--CCccccccccccceeeecCCeeeeehh
Confidence 111 223355566665566666667999963
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=6.7e-13 Score=119.20 Aligned_cols=240 Identities=14% Similarity=0.171 Sum_probs=176.3
Q ss_pred eeCccccEEEEEEecCCC--EEEEEeCCCcEEEEECCCCceeee------eCCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373 154 LYGHTEAVLTVFVLASAK--LLFTSGYDSIVRMWHLEDGFSIAS------SKPLGCTIRAVAADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 154 l~~h~~~V~~v~~~~~~~--~l~sgs~dg~v~iwd~~~~~~~~~------~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw 225 (536)
..+-...|..++|.-++. .+...+.|..+..+..+....... ......+|..+......|++|-.+|.+.+|
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVR 130 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEE
Confidence 334566788888876554 566666777888888776654433 344556777777777789999999999999
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecC--CeEEEEeCCCceEeEeee----------
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD--MTVRVWDRALLKCLKVLR---------- 290 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~---------- 290 (536)
....+... ......+..+ ..+..+.- ++..+++|+.. ..+++||+++.+.+..-.
T Consensus 131 ~~k~~d~h---------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 131 HDKSGDLH---------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred eccCCccc---------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 98755311 1122222222 33333333 45678889998 899999999886555432
Q ss_pred ccccEEEEe--ec--CCEEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 291 HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 291 ~~~~v~~~~--~~--~~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
-+-+++++. +. ...|++++ -+.+++||.+.++ ++..+. -...+++++...|+++++++|..-|.+..||++.+
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 223444444 33 56777777 7999999999874 566664 46789999999999999999999999999999998
Q ss_pred ccccccceee-eccCCCCCeEEEEEcCC--eEEEEeCCCcEEEEECCcc
Q 009373 365 CTEANVLLVA-TWIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 365 ~~~~~~~~~~-~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~ 410 (536)
.... .+.+-.+.|++|..+|. +|+++|-|..|+|+|+.+.
T Consensus 280 ------kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 280 ------KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ------eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 4443 48889999999999985 9999999999999999984
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=1.6e-14 Score=132.06 Aligned_cols=223 Identities=14% Similarity=0.161 Sum_probs=169.7
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD 236 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 236 (536)
-+-+.+.++.+|++|+.|+.-|.|-.+|..++.....+... ..|.++. .+.++++ ......++|||-..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~A-VAQK~y~yvYD~~G------- 200 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFA-VAQKKYVYVYDNNG------- 200 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHH-hhhhceEEEecCCC-------
Confidence 34567889999999999999999999999999877665432 2333333 3334444 44556788888432
Q ss_pred ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-C
Q 009373 237 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-G 310 (536)
Q Consensus 237 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d 310 (536)
..+..+..| ..|..+.| ..-+|++++..|.++--|+.+|+.+..+. ..+.+..+. |.+-.+-.|. +
T Consensus 201 -------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghsn 272 (545)
T KOG1272|consen 201 -------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSN 272 (545)
T ss_pred -------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCC
Confidence 244445444 45778888 33467888999999999999999998887 445555554 7777777777 8
Q ss_pred CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373 311 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 311 ~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
|+|.+|.....+++..+. .|.++|.++++.++|.+++|.+.|..++|||++.- ..+.++.. .-+...+++|.
T Consensus 273 GtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~------~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF------YQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred ceEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccc------cccceeec-CCCcccccccc
Confidence 999999999999988886 59999999999999999999999999999999987 33333333 34667888888
Q ss_pred CeEEEEeCCCcEEEEE
Q 009373 391 PWLVSAAGDGKLSLID 406 (536)
Q Consensus 391 ~~l~s~s~dg~i~vwd 406 (536)
.-+++.|....|.+|.
T Consensus 345 kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 345 KGLLALSYGDHVQIWK 360 (545)
T ss_pred ccceeeecCCeeeeeh
Confidence 7777777777899995
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=6.6e-13 Score=118.98 Aligned_cols=318 Identities=15% Similarity=0.104 Sum_probs=202.5
Q ss_pred HHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCC------CCCCCCCCC--CCCCchhhhhhhhhhccc
Q 009373 73 SEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIA------SAPLGAGFS--DDKSWKELFVEREFRSKT 144 (536)
Q Consensus 73 ~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~------~~~~~~~~~--~~~~Wk~~~~~~~~~~~~ 144 (536)
++|-+||..+.|.....|-+.|+.-...--+.++=...++|.-.. ...+++|.. ....|...-... .
T Consensus 17 ~~i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---~-- 91 (609)
T KOG4227|consen 17 FKIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---R-- 91 (609)
T ss_pred ceeeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh---h--
Confidence 456677777777777777777764432222222222233442221 222333322 245564321110 0
Q ss_pred cCCccceeeee-CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC--CCceEEEEe--cCCCEEEEEeCC
Q 009373 145 FLGRYSIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVA--ADKKLLVAGGTD 219 (536)
Q Consensus 145 ~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~--~~~~~l~sg~~d 219 (536)
+...+++... .|...|.|++|....+.|++|..+++|...|+++.+.+..+.. ..+.|+.+. |..+.|++.+.+
T Consensus 92 -k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~ 170 (609)
T KOG4227|consen 92 -KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA 170 (609)
T ss_pred -cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC
Confidence 1112344443 4668999999999999999999999999999999988876643 334676665 888999999999
Q ss_pred CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEe-Ee------e
Q 009373 220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCL-KV------L 289 (536)
Q Consensus 220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~-~~------~ 289 (536)
|.|.+||.+... .......+........++.| .+.+|++.+..+-+-+||.+..... .. +
T Consensus 171 ~~V~~~D~Rd~~----------~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L 240 (609)
T KOG4227|consen 171 KLVSFIDNRDRQ----------NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL 240 (609)
T ss_pred ceEEEEeccCCC----------CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC
Confidence 999999987642 11122333334455667777 4578999999999999998754321 11 1
Q ss_pred ec--cccEEE-EeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccc-------cceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373 290 RH--SDWVYG-LAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-------GNTKSLARSHTGDFLFTGGEDGAIHM 358 (536)
Q Consensus 290 ~~--~~~v~~-~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------~~i~~l~~~~~~~~l~tg~~dg~i~i 358 (536)
.. ..+... +.++|+.+.+-- ...-.+||+.+.++...-. .|. ..+.+++|.-+.. +++|+.+-.|++
T Consensus 241 ~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 241 PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHI 318 (609)
T ss_pred cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee-eeccCcccceEE
Confidence 11 111222 237788777766 4445678887755432221 222 2466777875544 999999999999
Q ss_pred EEcccCccccc-----------------cceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373 359 YEIINDCTEAN-----------------VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 359 wd~~~~~~~~~-----------------~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 408 (536)
|.+........ -..+..+.+|.+.++.+.|++ .+|++.+-...+++|.-.
T Consensus 319 WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 319 WKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 99854322111 123566889999999999987 677888889999999754
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.5e-12 Score=122.51 Aligned_cols=260 Identities=16% Similarity=0.197 Sum_probs=176.5
Q ss_pred eEEEEecCCCE-EEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCc-cCEEEEEE---eCCEEEEEecCCeEE
Q 009373 202 TIRAVAADKKL-LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLAL---DLTRIYSGSWDMTVR 276 (536)
Q Consensus 202 ~v~~~~~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~---~~~~l~s~s~dg~i~ 276 (536)
.-..++|||++ +++|..--.|++||+.. ....+..|. +.+..+.. |-..++.--.|++|-
T Consensus 55 t~ik~s~DGqY~lAtG~YKP~ikvydlan---------------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKPQIKVYDLAN---------------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred ceeEecCCCcEEEEecccCCceEEEEccc---------------ceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 34456799986 56677788999999854 333444453 34444444 334566666777777
Q ss_pred EEeCCCceEeEeeeccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc
Q 009373 277 VWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA 355 (536)
Q Consensus 277 iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~ 355 (536)
+...-.......+...+.=.+.. ++-.++++|++..|+-+++..|+-+..+.. ..+.++++..++...+|++|+.+|.
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCce
Confidence 65432111111111222222333 777888888899999999999999888863 5688999999999999999999999
Q ss_pred EEEEEcccCccccccceeeeccCCCC-----CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEee
Q 009373 356 IHMYEIINDCTEANVLLVATWIPHTG-----PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 428 (536)
Q Consensus 356 i~iwd~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 428 (536)
|.+||.++......+........|.+ .|+++.|+. -.+++|..+|.|.|||+++....
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl--------------- 263 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL--------------- 263 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce---------------
Confidence 99999998855444333333344444 499999964 58999999999999999985322
Q ss_pred CCCeeeeccccccEEEEEecC----CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCc
Q 009373 429 EPPQRMLHGFECNLLSVDIGA----DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT 504 (536)
Q Consensus 429 ~~~~~~~~~~~~~v~~~~~~~----~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 504 (536)
...-|+...++..+.|.+ +.++|.. ...++|||-.+|+........ -....+++-|+++++
T Consensus 264 ---~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-----------~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 264 ---LVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-----------SDLNDFCFVPGSGMF 328 (703)
T ss_pred ---eecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeecccc-----------CCcCceeeecCCceE
Confidence 233355667777777633 2666665 467999999999876543221 124567788888777
Q ss_pred cee
Q 009373 505 DQC 507 (536)
Q Consensus 505 ~~~ 507 (536)
-.+
T Consensus 329 f~A 331 (703)
T KOG2321|consen 329 FTA 331 (703)
T ss_pred EEe
Confidence 653
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=2.3e-11 Score=116.84 Aligned_cols=239 Identities=10% Similarity=0.089 Sum_probs=146.8
Q ss_pred cccEEEEEEecCCCEEEEEe-CCCcEEEEECC-CCce--eeeeCC-CCceEEEEecCCCEEEEEeC-CCcEEEEEcccCc
Q 009373 158 TEAVLTVFVLASAKLLFTSG-YDSIVRMWHLE-DGFS--IASSKP-LGCTIRAVAADKKLLVAGGT-DGFIHCWRAVEVL 231 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs-~dg~v~iwd~~-~~~~--~~~~~~-~~~~v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~ 231 (536)
.+....++++|++++|++++ .++.|.+|+++ ++.. +..... ....-.+++|+++.+++++. ++.|.+|++.+..
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 45577889999999887765 48899999996 3432 222221 12234566799998888764 8899999986421
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEE--eCCEEE-EEecCCeEEEEeCCCceEeE-------eeeccccEE--EEe
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLK-------VLRHSDWVY--GLA 299 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~iwd~~~~~~~~-------~~~~~~~v~--~~~ 299 (536)
.. ......+. +......+++ ++++++ +...++.|.+||+.+...+. ......... .+.
T Consensus 114 ~~---------~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 114 IP---------VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred CC---------CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 00 01111121 2223455666 566775 45567999999997633221 111122223 445
Q ss_pred ecCCEEEEec--CCcEEEEeCCC--Cc--EEEEEcc-----ccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccc
Q 009373 300 PHDTTVASTS--GSDVYIWDTNS--GC--LLTVVNG-----AHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTE 367 (536)
Q Consensus 300 ~~~~~l~~~~--d~~i~i~d~~~--~~--~~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~ 367 (536)
|++++++++. +++|.+||+.. ++ .+..+.. .+......+.++|++++++++.. ++.|.+|++......
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 9999887776 68999999973 32 2333321 01122346889999999998854 789999999654211
Q ss_pred cccceeeeccCCCCCeEEEEEcC--CeEEEEeC-CCcEEEEECCc
Q 009373 368 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRK 409 (536)
Q Consensus 368 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~ 409 (536)
...+..... ......+.+++ ++|+++.. +++|.+|++..
T Consensus 264 --~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 264 --LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred --EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 112222211 12445678875 67777665 89999998753
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=4.5e-12 Score=113.99 Aligned_cols=205 Identities=14% Similarity=0.097 Sum_probs=156.4
Q ss_pred eeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCce----EeEeeeccccEEEEe---ecCCEEEEec-C--CcEEEEeC
Q 009373 249 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK----CLKVLRHSDWVYGLA---PHDTTVASTS-G--SDVYIWDT 318 (536)
Q Consensus 249 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~---~~~~~l~~~~-d--~~i~i~d~ 318 (536)
....+++|..++.....|++|-.+|.+.+|....+. .+..+.....+..+. ....++++|+ . ..+.+||+
T Consensus 101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence 445677888888888889999999999999987443 233334445555555 3345555566 5 67999999
Q ss_pred CCCcEEEEEcccc--------ccceEEEEEeCC--CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE
Q 009373 319 NSGCLLTVVNGAH--------VGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF 388 (536)
Q Consensus 319 ~~~~~~~~~~~~~--------~~~i~~l~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 388 (536)
...+++..-+... .-.++++.|-+. ...|++++.-+.+++||.+.+. +++..+.--..+|+++..
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGL 255 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeee
Confidence 9986665543211 225678889887 7889999999999999999775 677777777889999888
Q ss_pred cC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEE
Q 009373 389 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIW 464 (536)
Q Consensus 389 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW 464 (536)
.| +++++|..-|.+..+|++.+... ...+.+..+.+.++..++. +++++|-|..|||+
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~------------------g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLL------------------GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred cCCCcEEEEecccchhheecccCceee------------------ccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence 65 89999999999999999985322 2335667788888887776 99999999999999
Q ss_pred eCCchhhHHHHH
Q 009373 465 NFSQAFEIERRA 476 (536)
Q Consensus 465 ~~~~~~~~~~~~ 476 (536)
|+.+...+....
T Consensus 318 D~ktrkll~kvY 329 (412)
T KOG3881|consen 318 DIKTRKLLHKVY 329 (412)
T ss_pred ecccchhhhhhh
Confidence 999977665543
No 215
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=131.03 Aligned_cols=266 Identities=13% Similarity=0.142 Sum_probs=177.7
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEEE----EecCCCEEEEEeCCCcEEEEEcccCccc
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRA----VAADKKLLVAGGTDGFIHCWRAVEVLPH 233 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~----~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 233 (536)
+++++..+-. ++|++|+ .-.+.+||+..+..+..+.... ..+.. +...+..++++..-+.+..=+....
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~--- 81 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQ--- 81 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhh---
Confidence 4455555543 5666554 4579999999886655442211 11111 1123445666665555544332111
Q ss_pred eecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEE-------EeecCCEEE
Q 009373 234 LFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTVA 306 (536)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l~ 306 (536)
....+..+-.. ..+-++...++.++.+..+-+||...+.....+.+...+.- .+++.-+++
T Consensus 82 -----------~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~ 149 (967)
T KOG0974|consen 82 -----------IIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIA 149 (967)
T ss_pred -----------hhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEE
Confidence 11111111111 23334778889999999999999988877777665443322 225666788
Q ss_pred Eec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373 307 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 385 (536)
Q Consensus 307 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 385 (536)
+|+ -+.|.+|+....+....+ .+|.+.|.++.++.+|.++++.|+|.++++|++.+.+. ...+..+|...|..
T Consensus 150 ~gsv~~~iivW~~~~dn~p~~l-~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-----~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 150 SGSVFGEIIVWKPHEDNKPIRL-KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-----LGCTGFGHSARVWA 223 (967)
T ss_pred eccccccEEEEeccccCCccee-cccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-----cCcccccccceeEE
Confidence 888 799999998744333334 48999999999999999999999999999999999842 22366799999999
Q ss_pred EEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc-ccEEEEEecCC--EEEEecCCCeEE
Q 009373 386 LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGAD--RIVCGGEEGIVR 462 (536)
Q Consensus 386 l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~sg~~Dg~i~ 462 (536)
+.|.|+.+++++.|.+.++|+.....- ..+.+|. ..+..+..... .++|++.||.++
T Consensus 224 ~~~~~n~i~t~gedctcrvW~~~~~~l--------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 224 CCFLPNRIITVGEDCTCRVWGVNGTQL--------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred EEeccceeEEeccceEEEEEeccccee--------------------hhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 999999999999999999996653210 1233333 23455554444 899999999999
Q ss_pred EEeCCc
Q 009373 463 IWNFSQ 468 (536)
Q Consensus 463 vW~~~~ 468 (536)
+|++..
T Consensus 284 ~~~l~~ 289 (967)
T KOG0974|consen 284 LWDLNG 289 (967)
T ss_pred hhhhhc
Confidence 999875
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=8.6e-13 Score=121.68 Aligned_cols=294 Identities=17% Similarity=0.122 Sum_probs=195.2
Q ss_pred eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEE
Q 009373 193 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRI 266 (536)
Q Consensus 193 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l 266 (536)
...+.+|.+.|..+. ..|..|++|+.|..|.+||+..+.. ...-..+|...|..-.| +...+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------------~l~f~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------------KLSFESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc------------ccccccccccchhhhhccCCCCCcCc
Confidence 345678888887776 5689999999999999999977642 22234468777777677 44679
Q ss_pred EEEecCCeEEEEeCC-CceEeEee---eccccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCcEEEEEc--ccccc---
Q 009373 267 YSGSWDMTVRVWDRA-LLKCLKVL---RHSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVN--GAHVG--- 333 (536)
Q Consensus 267 ~s~s~dg~i~iwd~~-~~~~~~~~---~~~~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~--~~~~~--- 333 (536)
++++.||.|++=.+. ++.+..+. .|.+.|..++ |+ ..-|.+++ |+.+.-+|++.+.+...+. ..+..
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 999999999987764 34333232 3888888777 44 34455555 8999999999876544332 22333
Q ss_pred ceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccC------CCCCeEEEEEc--CCeEEEEeCCCcEEE
Q 009373 334 NTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIP------HTGPVNSLAFE--FPWLVSAAGDGKLSL 404 (536)
Q Consensus 334 ~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~s~s~dg~i~v 404 (536)
..++++.+|... .+++|+.|-.+++||.+.-........+..+.. ..-.|++++|+ +.-|.++-.|-.|++
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 678889998665 899999999999999876543322222233322 24478999997 455666667778999
Q ss_pred EECCcccccCCCCCCCceeeEEeeCCCeeeecccccc--EEEEEe---cCCEEEEecCCCeEEEEeCCchhhHHHHHHhh
Q 009373 405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN--LLSVDI---GADRIVCGGEEGIVRIWNFSQAFEIERRARAL 479 (536)
Q Consensus 405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~---~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~ 479 (536)
+.-...... .+...... -....+.+.||... |-.+.| ...|+++|+.-|.|.||+-.+++.+.-.
T Consensus 363 F~~~~~~G~-~p~~~s~~-----~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M---- 432 (559)
T KOG1334|consen 363 FNKSMGDGS-EPDPSSPR-----EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM---- 432 (559)
T ss_pred eccccccCC-CCCCCcch-----hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----
Confidence 954332111 00000000 01111235666543 444444 3459999999999999999998766533
Q ss_pred hcccchhHHHhhhhccccccCCCCcceeEeecccC
Q 009373 480 RGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKN 514 (536)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 514 (536)
++.+ .-+.+++-+|.-..||++.++....
T Consensus 433 egDr------~VVNCLEpHP~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 433 EGDR------HVVNCLEPHPHLPVLASSGIDHDVK 461 (559)
T ss_pred hccc------ceEeccCCCCCCchhhccCCcccee
Confidence 2221 2467899999999999987766544
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.6e-11 Score=114.26 Aligned_cols=283 Identities=14% Similarity=0.105 Sum_probs=182.5
Q ss_pred CccccEEEEEEecCCCE-EEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE---ecCCCEEEEEeCCCcEEEEEcccCc
Q 009373 156 GHTEAVLTVFVLASAKL-LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV---AADKKLLVAGGTDGFIHCWRAVEVL 231 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~-l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~---~~~~~~l~sg~~dg~i~vwd~~~~~ 231 (536)
+|...-+.|..+|||.| +|||.+--.|++||+.+-.... -......++.| +.|-..++.-..|.+|.+-.-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF-ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G-- 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF-ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-- 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeee-eecccccceeEEEeccchhhheEeecCceeeehhhcC--
Confidence 67888899999999996 5678889999999987543221 11222233333 33444455555566664432100
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEE
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVA 306 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~ 306 (536)
....+ .-...-.+++++ .--|+.++....|+=++++.|+.+..+. ..+.++++. +...+|+
T Consensus 126 -------------~hy~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 126 -------------RHYRT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred -------------eeeee-ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence 00000 011122344441 1234555556778889999999999888 446666665 6677888
Q ss_pred Eec-CCcEEEEeCCCCcEEEEEcc-----cccc-----ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373 307 STS-GSDVYIWDTNSGCLLTVVNG-----AHVG-----NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 375 (536)
Q Consensus 307 ~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~-----~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 375 (536)
+|+ +|.|..||.++...+..+.. .|.+ .|+++.|+.+|-.+++|+.+|.|.|||++... ..+..
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-----pl~~k 266 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-----PLLVK 266 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----ceeec
Confidence 888 89999999999876666532 2333 39999999999999999999999999999983 12222
Q ss_pred ccCCCCCeEEEEEcC----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCE
Q 009373 376 WIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADR 451 (536)
Q Consensus 376 ~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 451 (536)
-.+..-+|..+.|.+ +.+++. ....++|||-.++....... ..+...-+|.-++..+
T Consensus 267 dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE------------------pt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE------------------PTSDLNDFCFVPGSGM 327 (703)
T ss_pred ccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc------------------ccCCcCceeeecCCce
Confidence 233456888888843 344443 45679999988764332211 1223444566677779
Q ss_pred EEEecCCCeEEEEeCCchhhHHHHHHhh
Q 009373 452 IVCGGEEGIVRIWNFSQAFEIERRARAL 479 (536)
Q Consensus 452 l~sg~~Dg~i~vW~~~~~~~~~~~~~~~ 479 (536)
+.++-+++.+..|=++.-.+.-+....+
T Consensus 328 ~f~Ane~~~m~~yyiP~LGPaPrWCSfL 355 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPSLGPAPRWCSFL 355 (703)
T ss_pred EEEecCCCcceeEEccccCCCchhhhHH
Confidence 9999999999888877654444443333
No 218
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.46 E-value=6.8e-11 Score=115.84 Aligned_cols=264 Identities=14% Similarity=0.065 Sum_probs=171.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEe
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 249 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 249 (536)
+..+++++.+|.|..+|..+|+.+...............++..+++++.+|.+..+|..+++.. ...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~-------------W~~ 131 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKEL-------------WRA 131 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEe-------------eee
Confidence 6788889999999999999999887765443322233456788999999999999999887521 111
Q ss_pred eCCccCEEE-EEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEE-------EeecCCEEEEec-CCcEEEEeCCC
Q 009373 250 WEHEGPITS-LALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTVASTS-GSDVYIWDTNS 320 (536)
Q Consensus 250 ~~h~~~v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l~~~~-d~~i~i~d~~~ 320 (536)
. ..+.+.+ ....++.++.++.+|.+..||.++++.+..+........ +..++ .++.+. ++.+..+|+++
T Consensus 132 ~-~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~-~v~~~~~~g~v~ald~~t 209 (377)
T TIGR03300 132 K-LSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG-GVLVGFAGGKLVALDLQT 209 (377)
T ss_pred c-cCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC-EEEEECCCCEEEEEEccC
Confidence 1 1112221 223567788888999999999999998887763332211 11334 455555 79999999999
Q ss_pred CcEEEEEcccccc---c---eEEEEEeC--CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCe
Q 009373 321 GCLLTVVNGAHVG---N---TKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW 392 (536)
Q Consensus 321 ~~~~~~~~~~~~~---~---i~~l~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (536)
|+.+......... . ...+.-+| .+..+++++.+|.++.||..++. .+.... ..........++.
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~------~~W~~~--~~~~~~p~~~~~~ 281 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR------VLWKRD--ASSYQGPAVDDNR 281 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc------EEEeec--cCCccCceEeCCE
Confidence 9877554311110 0 00010011 35678888899999999998873 322222 1122334456788
Q ss_pred EEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373 393 LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 393 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~ 472 (536)
++.++.||.|..+|..++...+.... +.+. ...+....++.+++++.||.|+++|..+|+.+
T Consensus 282 vyv~~~~G~l~~~d~~tG~~~W~~~~----------------~~~~--~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 282 LYVTDADGVVVALDRRSGSELWKNDE----------------LKYR--QLTAPAVVGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred EEEECCCCeEEEEECCCCcEEEcccc----------------ccCC--ccccCEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence 99999999999999988754433210 0000 11122234678999999999999999998776
Q ss_pred HH
Q 009373 473 ER 474 (536)
Q Consensus 473 ~~ 474 (536)
.+
T Consensus 344 ~~ 345 (377)
T TIGR03300 344 AR 345 (377)
T ss_pred EE
Confidence 53
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=8.1e-11 Score=103.27 Aligned_cols=235 Identities=11% Similarity=0.201 Sum_probs=159.7
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEE-EEecC------CeEE
Q 009373 204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY-SGSWD------MTVR 276 (536)
Q Consensus 204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~d------g~i~ 276 (536)
.++..|..-+++|..+| .+||+.+.-+ ......+....-.+..+-|..++|+ .|+.+ ..|.
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~k-----------e~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFK-----------ESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchh-----------hhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEE
Confidence 44556666677766665 7888874311 0001111111123334444555544 34333 4799
Q ss_pred EEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCC-CCcEEEEEccc-cccceEEEEEeCCCCEEEE-EcCC
Q 009373 277 VWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTN-SGCLLTVVNGA-HVGNTKSLARSHTGDFLFT-GGED 353 (536)
Q Consensus 277 iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~-~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~t-g~~d 353 (536)
|||=...+++.++....+|.++......+++.-.+.|.||... +.+.++.+... ......+++-..+..+||. |-.-
T Consensus 79 IWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 79 IWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred EEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 9998888899999999999999999999999999999999988 44566655421 2334444444334445554 4456
Q ss_pred CcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCc-EEEEECCcccccCCCCCCCceeeEEeeCC
Q 009373 354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGK-LSLIDVRKLLRSGRPTSGKRVSRVIEVEP 430 (536)
Q Consensus 354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 430 (536)
|.|+|-|+...... ......+|.+.|.|++.+ +..+||+|..|+ |+|||..++.......-|
T Consensus 159 GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG----------- 223 (346)
T KOG2111|consen 159 GQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG----------- 223 (346)
T ss_pred ceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-----------
Confidence 99999999876321 235667999999999996 689999999998 899999987544332211
Q ss_pred CeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhh
Q 009373 431 PQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFE 471 (536)
Q Consensus 431 ~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~ 471 (536)
.....+.+++|+++ +|+.+|+-|+|.|+.+.....
T Consensus 224 ------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 224 ------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 12256778887776 999999999999999987543
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=121.43 Aligned_cols=182 Identities=19% Similarity=0.229 Sum_probs=135.7
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 228 (536)
-+.+..|.+.|.|-.|+|+|.-|+|++.||.|++|. .+|....++.....+|+|.. |+.+.++-+.. +.+.+=.+.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~ 174 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecc
Confidence 356778999999999999999999999999999999 45655555555556666665 66554443322 344443332
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCE
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTT 304 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~ 304 (536)
. .........|.+-|.++.| ..+.+++|+.|-..++||.........-.|.-+|++++ |+ +.
T Consensus 175 ~-------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 175 A-------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred c-------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cc
Confidence 2 3456678899999999999 56899999999999999976444444444889999998 44 56
Q ss_pred EEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373 305 VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 305 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd 360 (536)
++.++-++++ +.....+.|..++|++||..++.|+..|.+.+=.
T Consensus 241 ~~v~S~nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 241 YLLWSYNTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeeeeee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 6666655555 3345778899999999999999999999876543
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.41 E-value=8.7e-11 Score=103.10 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=151.0
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEe
Q 009373 202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD 279 (536)
Q Consensus 202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd 279 (536)
.+.++..|...++++.....|.||..... .......++..|...|+.++| ..+.|++|+.|+.-++|.
T Consensus 14 tchAwn~drt~iAv~~~~~evhiy~~~~~----------~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGA----------DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred eeeeecCCCceEEeccCCceEEEEEecCC----------CCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 34455688999999999999999987554 225577888999999999999 667999999999999999
Q ss_pred C-CCceEe---EeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEE---EEEccccccceEEEEEeCCCCEEEE
Q 009373 280 R-ALLKCL---KVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLL---TVVNGAHVGNTKSLARSHTGDFLFT 349 (536)
Q Consensus 280 ~-~~~~~~---~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~t 349 (536)
. ..++-. ..++++...+++. |.++.|++|+ ...|.||-++..+.- ..++..+.+.|+++.|+|++-+|++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 8 333322 2334888888887 8899999998 466888877654432 1122357788999999999999999
Q ss_pred EcCCCcEEEEEcccCcccc-----------c-cceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcc
Q 009373 350 GGEDGAIHMYEIINDCTEA-----------N-VLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 350 g~~dg~i~iwd~~~~~~~~-----------~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 410 (536)
|+.|+.++||..--..... . -..+..+....+.|..+.|+ +..|+-.+.|+.+.+=|....
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 9999999999753211110 0 01233344567889999998 489999999999999998765
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=6.2e-10 Score=106.85 Aligned_cols=298 Identities=14% Similarity=0.098 Sum_probs=173.2
Q ss_pred CEE-EEEeCCCcEEEEECCCCceeeeeCCCCce--EEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373 171 KLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 247 (536)
Q Consensus 171 ~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 247 (536)
+++ ++-..++.|.+.|..+.+.+..+...... ...+++|++++++++.||.|.++|+.+.+ .+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------------~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------------VVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------------EEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------------EEE
Confidence 444 45567899999999999999998764442 24567999999999999999999997753 333
Q ss_pred EeeCCccCEEEEEE--eCCEEEEE-ecCCeEEEEeCCCceEeEeeec--------cccEEEEe--ecCC-EEEEecC-Cc
Q 009373 248 RLWEHEGPITSLAL--DLTRIYSG-SWDMTVRVWDRALLKCLKVLRH--------SDWVYGLA--PHDT-TVASTSG-SD 312 (536)
Q Consensus 248 ~~~~h~~~v~~l~~--~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~--------~~~v~~~~--~~~~-~l~~~~d-~~ 312 (536)
++... ....++++ +|++++++ ..++.+.++|.++.+.++.+.. ...+.++. +... ++++--+ +.
T Consensus 73 ~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 73 TIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp EEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred EEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 44332 33456666 88888766 4789999999999999988762 23455654 5555 4444454 88
Q ss_pred EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceee-eccCCCCCeEEEE---
Q 009373 313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVA-TWIPHTGPVNSLA--- 387 (536)
Q Consensus 313 i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~--- 387 (536)
|.+.|....+.+..-............|+|++++++++ ..+..|-++|..+..... .+. --..|..++..+-
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~---~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA---LIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE---EEE-SSSBEETTEEEEEETT
T ss_pred EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE---EeeccccccccccccccCCC
Confidence 98889887654432221244567788999999987664 567789999988773211 110 0123444444332
Q ss_pred --------EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccE-EEEEecCCEEEEe---
Q 009373 388 --------FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL-LSVDIGADRIVCG--- 455 (536)
Q Consensus 388 --------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg--- 455 (536)
-.....++.-....+.+||..+.+ .+ +.+....... ...+|++.++...
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk---------vv----------~~I~~~G~glFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK---------VV----------KTIPTQGGGLFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTS---------EE----------EEEE-SSSS--EE--TT-SEEEEE-TT
T ss_pred cceEEeeccccceecccccCCccccchhhcCe---------EE----------EEEECCCCcceeecCCCCccEEeeccC
Confidence 112222222222344455544421 11 1122222222 2335666677666
Q ss_pred -cCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373 456 -GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK 513 (536)
Q Consensus 456 -~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 513 (536)
...+.|.++|..+.+.+....... ..+..+++|+++|+.+-.+.++.++
T Consensus 290 ~~~~~~v~viD~~tl~~~~~i~~~~---------~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 290 NPDADTVQVIDKKTLKVVKTITPGP---------GKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp -SSHT-EEEEECCGTEEEE-HHHHH---------T--EEEEEE-TTSSEEEEEEE--TT
T ss_pred CCCCceEEEEECcCcceeEEEeccC---------CCcEeccEECCCCCEEEEEEecCCC
Confidence 556899999999986655543221 1226789999999999988887664
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=8.7e-11 Score=103.37 Aligned_cols=303 Identities=14% Similarity=0.104 Sum_probs=183.4
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCC-CceEEEEecCCC-EEEEEeCCCcEEEEEcccCccceecccCc
Q 009373 163 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGS 240 (536)
Q Consensus 163 ~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 240 (536)
-++|+|+|+++|+++.- .+.|=|.++-+..+-+..- ...-..+..+.. .|.....++.|.+|++...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--------- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--------- 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce---------
Confidence 35799999999999865 7778887776544332111 011122334444 45566788999999996542
Q ss_pred ccccceEEeeCCccCEEEEEE--eC-CEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEeecCCEEEEec--CC--
Q 009373 241 EKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS--GS-- 311 (536)
Q Consensus 241 ~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~-- 311 (536)
-...+.....++.+++| +| ..|.+...|-.|.+|.+.+.+....-. +.....++.++|++.+..+ |-
T Consensus 83 ----w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkd 158 (447)
T KOG4497|consen 83 ----WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKD 158 (447)
T ss_pred ----eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHH
Confidence 34455667788999999 66 456778889999999998877654432 4445556668888776665 21
Q ss_pred ---------------------------------cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373 312 ---------------------------------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM 358 (536)
Q Consensus 312 ---------------------------------~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i 358 (536)
.+.+||.--.-.+..+ ...-++..++|+|.+++|++|+.|+.+||
T Consensus 159 yv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 159 YVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhh
Confidence 1223322111111111 12346888999999999999999999888
Q ss_pred EEcccCccc------------------------------------------------------cccceeeec------cC
Q 009373 359 YEIINDCTE------------------------------------------------------ANVLLVATW------IP 378 (536)
Q Consensus 359 wd~~~~~~~------------------------------------------------------~~~~~~~~~------~~ 378 (536)
.+--+-+.- .....+..+ ..
T Consensus 237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn 316 (447)
T KOG4497|consen 237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN 316 (447)
T ss_pred hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence 653211100 000011111 12
Q ss_pred CCCCeEEEEEcC--CeEEEEeCC--CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EE
Q 009373 379 HTGPVNSLAFEF--PWLVSAAGD--GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI 452 (536)
Q Consensus 379 h~~~v~~l~~~~--~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 452 (536)
....+.-++|++ .+++|-... +.+-+||++..+.-. ...+.| +|.++.+++. .|
T Consensus 317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a------------------vLiQk~--piraf~WdP~~prL 376 (447)
T KOG4497|consen 317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA------------------VLIQKH--PIRAFEWDPGRPRL 376 (447)
T ss_pred cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh------------------hhhhcc--ceeEEEeCCCCceE
Confidence 234567788876 355544332 568999998742111 011233 3445555543 56
Q ss_pred EEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373 453 VCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK 512 (536)
Q Consensus 453 ~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 512 (536)
+.+.....+++|.......+..... | ..++.+.|..+|..++.|+-++.
T Consensus 377 ~vctg~srLY~W~psg~~~V~vP~~---G--------F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 377 VVCTGKSRLYFWAPSGPRVVGVPKK---G--------FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEcCCceEEEEcCCCceEEecCCC---C--------ceeeeEEecCCCcEEEEEcCCce
Confidence 5555566799999887554432222 2 34678999999999988765543
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2e-10 Score=113.65 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=141.1
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeC---CCcEEEEECCCCcee--eeeCCCCceEEEEecCCCEEEEE-eCCC--cEE
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAG-GTDG--FIH 223 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~---dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg-~~dg--~i~ 223 (536)
+.+..+...+.+.+|+|||+.|+..+. +..+.+|++.+++.. ..+.++.. ...++|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEE
Confidence 455667788999999999998886543 457999999888543 33334332 35788999988754 4455 488
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC-Ce--EEEEeCCCceEeEeeeccccE--E
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-MT--VRVWDRALLKCLKVLRHSDWV--Y 296 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~v--~ 296 (536)
+||+.++. ...+..+...+....| +++.|+..+.+ +. |.++|+.+++........... .
T Consensus 271 ~~d~~tg~--------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~ 336 (429)
T PRK03629 271 VMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 336 (429)
T ss_pred EEECCCCC--------------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 88887652 2233344455677788 77878776654 44 555577666543322222222 4
Q ss_pred EEeecCCEEEEec-C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc---EEEEEcccCccccc
Q 009373 297 GLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA---IHMYEIINDCTEAN 369 (536)
Q Consensus 297 ~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~---i~iwd~~~~~~~~~ 369 (536)
.++|+|+.++... + ..|.+||+.+++.. .+... .......|+|||+.|+.++.++. +.++++...
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----- 408 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----- 408 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-----
Confidence 4569999887755 2 35888999888644 33222 22346789999999999888765 566666433
Q ss_pred cceeeeccCCCCCeEEEEEcC
Q 009373 370 VLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 370 ~~~~~~~~~h~~~v~~l~~~~ 390 (536)
....+.+|.+.+...+|+|
T Consensus 409 --~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 --FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --CeEECccCCCCcCCcccCC
Confidence 3455667888888888876
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=9.1e-10 Score=98.36 Aligned_cols=246 Identities=19% Similarity=0.199 Sum_probs=152.5
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC---CCCceEEEEecCC-CEEEEEeCCCcEEEEEcccCccce
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVAADK-KLLVAGGTDGFIHCWRAVEVLPHL 234 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~ 234 (536)
-.+..++|++.-..+|++..|-.|++||-.. .+...++ ..+..++++.|.+ ..|++|... -|.+|.........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4567788988777788999999999999776 3333332 2333444555654 456666655 58899865321100
Q ss_pred ecc-cCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCceEeEeee-ccccE--EEEeecCCEEEE
Q 009373 235 FDI-SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLKVLR-HSDWV--YGLAPHDTTVAS 307 (536)
Q Consensus 235 ~~~-~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~v--~~~~~~~~~l~~ 307 (536)
-.. ..+.....+....+| .+|+++.| |+..+++++ .|..|.|||..++..+.... ..+.+ ...+|++.++++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 000 011122334455566 78999999 778888887 46789999999988776664 33334 344599999998
Q ss_pred ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc---------cceeeec-
Q 009373 308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN---------VLLVATW- 376 (536)
Q Consensus 308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~---------~~~~~~~- 376 (536)
+. |+..++|+............ ..+.|...+|+|+|.+|+.... |.-++|.+.-...... ...+..+
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 88 99999996554332222222 3458999999999987654432 3345565543321111 1111111
Q ss_pred -----cC---CCCCeEEEEEcC--CeEEEEeCCC--------cEEEEECCc
Q 009373 377 -----IP---HTGPVNSLAFEF--PWLVSAAGDG--------KLSLIDVRK 409 (536)
Q Consensus 377 -----~~---h~~~v~~l~~~~--~~l~s~s~dg--------~i~vwd~~~ 409 (536)
.+ -.+++.+++|+| .+|++.-..+ .|.+||.+.
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 11 256889999987 6888766543 356676654
No 226
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=1.3e-09 Score=106.88 Aligned_cols=259 Identities=15% Similarity=0.029 Sum_probs=158.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373 169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 248 (536)
Q Consensus 169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 248 (536)
++..++.++.++.+..+|..+|+.+................+..++.++.+|.+..||..+++..- ..... .....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~---~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLW-TYSRV---TPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceee-EEccC---CCcee
Confidence 467788889999999999999998876654322111112345678888899999999998875211 10000 00000
Q ss_pred eeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecccc-----------E-EEEeecCCEEEEe-cCCcEEE
Q 009373 249 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-----------V-YGLAPHDTTVAST-SGSDVYI 315 (536)
Q Consensus 249 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~l~~~-~d~~i~i 315 (536)
..... +....++.++.+..+|.+..+|..+++.+........ + .+....+..++.+ .++.+..
T Consensus 180 ~~~~~----sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 180 LRGSA----SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred ecCCC----CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 11111 1123346788888899999999999987765431100 0 0111233444444 4899999
Q ss_pred EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEEEEcCCeEE
Q 009373 316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLV 394 (536)
Q Consensus 316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~ 394 (536)
+|..+|+.+..... . ...... ..+..+++++.||.+..+|..++. .+..... ......+....++.|+
T Consensus 256 ~d~~tG~~~W~~~~--~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~------~~W~~~~~~~~~~ssp~i~g~~l~ 324 (377)
T TIGR03300 256 LDLRSGRVLWKRDA--S-SYQGPA--VDDNRLYVTDADGVVVALDRRSGS------ELWKNDELKYRQLTAPAVVGGYLV 324 (377)
T ss_pred EECCCCcEEEeecc--C-CccCce--EeCCEEEEECCCCeEEEEECCCCc------EEEccccccCCccccCEEECCEEE
Confidence 99999988776541 1 111222 246778888899999999998883 3322211 1112233334568999
Q ss_pred EEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEE
Q 009373 395 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIW 464 (536)
Q Consensus 395 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW 464 (536)
+++.+|.|+++|..+++..++...+ ......+....++.|+.++.||.|+.+
T Consensus 325 ~~~~~G~l~~~d~~tG~~~~~~~~~------------------~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 325 VGDFEGYLHWLSREDGSFVARLKTD------------------GSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEcC------------------CCccccCCEEECCEEEEEeCCceEEEe
Confidence 9999999999999876443321110 001122223445678899999999876
No 227
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.35 E-value=9.4e-13 Score=85.10 Aligned_cols=45 Identities=33% Similarity=0.637 Sum_probs=40.4
Q ss_pred ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHH
Q 009373 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFY 108 (536)
Q Consensus 64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~ 108 (536)
+..||+|++.+||+||+++||.++++|||+|++++.++.+|+.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 468999999999999999999999999999999999899999864
No 228
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1e-10 Score=116.07 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=132.2
Q ss_pred CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEe--eec
Q 009373 219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKV--LRH 291 (536)
Q Consensus 219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~--~~~ 291 (536)
+..|.+||.... ....+..|...+.+..| +++.|+.++.+ ..|++||+.+++.... +..
T Consensus 183 ~~~i~i~d~dg~--------------~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g 248 (429)
T PRK01742 183 PYEVRVADYDGF--------------NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG 248 (429)
T ss_pred eEEEEEECCCCC--------------CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC
Confidence 468999987543 23345677888999999 77888887654 3799999988764332 221
Q ss_pred cccEEEEeecCCEEEEec--CCcE--EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCcc
Q 009373 292 SDWVYGLAPHDTTVASTS--GSDV--YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCT 366 (536)
Q Consensus 292 ~~~v~~~~~~~~~l~~~~--d~~i--~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~ 366 (536)
...-..++|+|+.|+.+. ++.+ .+||+.+++.. .+. .+...+....|+|+|+.|+.++ .+|...||++.....
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 122245669999887754 5654 45577666543 343 3666788999999999766554 678899998765421
Q ss_pred ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE
Q 009373 367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS 444 (536)
Q Consensus 367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 444 (536)
. ...+ .+.. ....|+| ++|+.++.++ +.+||+.++.... ....+.....+
T Consensus 327 ~-----~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-------------------lt~~~~~~~~~ 378 (429)
T PRK01742 327 G-----ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-------------------LSSTFLDESPS 378 (429)
T ss_pred C-----eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-------------------ecCCCCCCCce
Confidence 1 1111 2333 3466765 6787777765 6669987642110 00111112345
Q ss_pred EEecCCEEEEecCCCeEEEEeCC
Q 009373 445 VDIGADRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 445 ~~~~~~~l~sg~~Dg~i~vW~~~ 467 (536)
+++++++|+.++.+|.+.+|.+.
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEE
Confidence 77888899999999999888864
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.34 E-value=2.1e-09 Score=103.25 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=165.5
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEEEEEe-CCCcEEEEEc
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVAGG-TDGFIHCWRA 227 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~-~dg~i~vwd~ 227 (536)
.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++..... .-.++++||++++++. .++.+.++|.
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 4566665544445578999999999999999999999999999988865443 4467789999888775 6899999998
Q ss_pred ccCccceecccCcccccceEEeeC-------CccCEEEEEE--eCCEEEEE-ecCCeEEEEeCCCceEe--EeeeccccE
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWE-------HEGPITSLAL--DLTRIYSG-SWDMTVRVWDRALLKCL--KVLRHSDWV 295 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~--~~~~l~s~-s~dg~i~iwd~~~~~~~--~~~~~~~~v 295 (536)
++.+ .+..+.. ....+..+.. ....++.. -.-+.|-+-|....+.+ ..+......
T Consensus 108 ~tle-------------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 108 ETLE-------------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp TT---------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred cccc-------------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 7754 2222211 2345666654 33434444 44588888887665433 233333333
Q ss_pred E--EEeecCCEEEEec--CCcEEEEeCCCCcEEEEEcc---ccccceEEEEEeCCCCEE-EEEc---------CCCcEEE
Q 009373 296 Y--GLAPHDTTVASTS--GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFL-FTGG---------EDGAIHM 358 (536)
Q Consensus 296 ~--~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l-~tg~---------~dg~i~i 358 (536)
. .+.+++++++++. .+.|-++|..+++.+..+.. .|..+...+ .+|....+ +++. ....+.+
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCcccc
Confidence 3 3448888877765 68899999999988776642 355555444 34433222 2221 1223334
Q ss_pred EEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEE----eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373 359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA----AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ 432 (536)
Q Consensus 359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (536)
||.... +.+.++....++ .-+..+| .++.+. ...+.|.++|.++.......
T Consensus 254 ~d~~~w------kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i---------------- 310 (369)
T PF02239_consen 254 HDDYAW------KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI---------------- 310 (369)
T ss_dssp STTTBT------SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H----------------
T ss_pred chhhcC------eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE----------------
Confidence 554444 667777666666 6666676 677777 44589999999985221110
Q ss_pred eeeccccccEEEEEecC--C--EEEEecCCCeEEEEeCCchhhHHHHH
Q 009373 433 RMLHGFECNLLSVDIGA--D--RIVCGGEEGIVRIWNFSQAFEIERRA 476 (536)
Q Consensus 433 ~~~~~~~~~v~~~~~~~--~--~l~sg~~Dg~i~vW~~~~~~~~~~~~ 476 (536)
..+....+..+.++. + ++.....+|.|.+||..+.+++.+..
T Consensus 311 --~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 311 --TPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp --HHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred --eccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 011112255555554 4 44455555589999999987776543
No 230
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=7.7e-10 Score=98.15 Aligned_cols=247 Identities=12% Similarity=0.203 Sum_probs=151.6
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeeeCCCCc------------eEEEEe----cCCCEEEE
Q 009373 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGC------------TIRAVA----ADKKLLVA 215 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~~~~------------~v~~~~----~~~~~l~s 215 (536)
-.+-|.+|.|...|.+||||..+|.|.+|.-+... ....++.|.. .|..+. .+...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999999754332 2333444432 122222 24457888
Q ss_pred EeCCCcEEEEEcccCccce--ecccCcc--------------------cccceEE-eeCCccCEEEEEE--eCCEEEEEe
Q 009373 216 GGTDGFIHCWRAVEVLPHL--FDISGSE--------------------KQNTQFR-LWEHEGPITSLAL--DLTRIYSGS 270 (536)
Q Consensus 216 g~~dg~i~vwd~~~~~~~~--~~~~~~~--------------------~~~~~~~-~~~h~~~v~~l~~--~~~~l~s~s 270 (536)
.+.|.+|++|.+....... +...... ...+... -..|+-.|.+|.+ |...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 8999999999986543222 0000000 0001111 1257888999999 44555554
Q ss_pred cCCeEEEEeCCCce-EeEeee--------ccccEEEEe--ec-CC-EEEEecCCcEEEEeCCCCcEEE------------
Q 009373 271 WDMTVRVWDRALLK-CLKVLR--------HSDWVYGLA--PH-DT-TVASTSGSDVYIWDTNSGCLLT------------ 325 (536)
Q Consensus 271 ~dg~i~iwd~~~~~-~~~~~~--------~~~~v~~~~--~~-~~-~l~~~~d~~i~i~d~~~~~~~~------------ 325 (536)
.|=.|.+|+++-.. ...... ...-|++-. |. -+ ++.+++.|+|++-|++.....-
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 57789999986322 221111 111223322 22 23 4445558999999998532110
Q ss_pred ---EEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC------------Ce---EEEE
Q 009373 326 ---VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG------------PV---NSLA 387 (536)
Q Consensus 326 ---~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~------------~v---~~l~ 387 (536)
.+..+-...|..+.|+++|+++++-+. -+|++||+.... .++.+..-|.. .| ..++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~-----~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA-----KPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC-----CcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 111123346889999999999988543 579999996553 34444444421 22 3467
Q ss_pred EcC--CeEEEEeCCCcEEEEECCcc
Q 009373 388 FEF--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 388 ~~~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
|++ .+++||+....++++++..+
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EcCCcceEecccccceEEEecCCCC
Confidence 776 49999999999999997654
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=4.3e-10 Score=113.60 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=147.0
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE------EEEecCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373 164 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI------RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 237 (536)
Q Consensus 164 v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v------~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 237 (536)
..+.-+...++.++.++.+.+||...+..........-.. .-.+++.-++++|+.-+.|.+|++....
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn------ 166 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN------ 166 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC------
Confidence 3444567788888899999999998887666654433222 1223666789999999999999986321
Q ss_pred cCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeE--eeeccccEEEEeecCCEEEEec-CCc
Q 009373 238 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--VLRHSDWVYGLAPHDTTVASTS-GSD 312 (536)
Q Consensus 238 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~-d~~ 312 (536)
....+.+|.+.|.++.+ ++.++++.|+|+++++|++++.+... .+.|...|..+......+++++ |-+
T Consensus 167 -------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedct 239 (967)
T KOG0974|consen 167 -------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCT 239 (967)
T ss_pred -------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceE
Confidence 22268899999999999 99999999999999999999988765 4559999998884444788777 999
Q ss_pred EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373 313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 365 (536)
Q Consensus 313 i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~ 365 (536)
.++|+.. +..+..+.......|..++..++...++|++.||.+++||+....
T Consensus 240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 9999655 444446654345589999999999999999999999999987653
No 232
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3.4e-11 Score=127.22 Aligned_cols=183 Identities=17% Similarity=0.295 Sum_probs=136.6
Q ss_pred eEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEE
Q 009373 202 TIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV 277 (536)
Q Consensus 202 ~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~i 277 (536)
.+.++. |...+.+||+.||.|++|....+. ........+. +.|+.+.| .|+.+..+..||.+.+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~-----------~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ-----------QVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCC-----------eEEEeeccCc-chhhhhhhcccCCceeeeccCCceee
Confidence 344554 777899999999999999986543 1122222233 77888888 7899999999999999
Q ss_pred EeCCCceEeEeee-ccccEEEEeecCCEEEEec----CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC
Q 009373 278 WDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS----GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 352 (536)
Q Consensus 278 wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~ 352 (536)
|... .+.....+ |......+..-+..+++++ ++.+.+||..-.....-+...|.+.++++++.|..++|++|+.
T Consensus 2278 ~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred cccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 9987 34444444 7777777765556666654 4789999976543333333579999999999999999999999
Q ss_pred CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCccc
Q 009373 353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~ 411 (536)
+|.|++||++.. ...+++.. +. ...++++|+..|.|+||++....
T Consensus 2357 ~G~v~l~D~rqr------ql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQR------QLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred cCcEEEeehHHH------HHHHHhhh-------hh-hhheeeccCcccceEEEEccccc
Confidence 999999999887 44444433 22 35799999999999999998753
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=7.5e-10 Score=110.12 Aligned_cols=215 Identities=14% Similarity=0.113 Sum_probs=138.1
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeee--eCCCCceEEEEecCCCEEE-EEeCCC--cE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDG--FI 222 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg--~i 222 (536)
.+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... +.+. .....++|+|+.|+ +.+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCCCCceE
Confidence 45667788889999999999999987743 4699999988865332 2221 22356789998765 455555 58
Q ss_pred EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CCe--EEEEeCCCceEeEeeeccccE--
Q 009373 223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMT--VRVWDRALLKCLKVLRHSDWV-- 295 (536)
Q Consensus 223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~v-- 295 (536)
++||+.++. ...+..+.......+| +++.|+.++. +|. |.++|+.+++...........
T Consensus 275 y~~d~~~g~--------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~ 340 (433)
T PRK04922 275 YVMDLGSRQ--------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR 340 (433)
T ss_pred EEEECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence 889987652 2234445444556777 7777776664 444 666777766543322222222
Q ss_pred EEEeecCCEEEEec-C-C--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC---CcEEEEEcccCcccc
Q 009373 296 YGLAPHDTTVASTS-G-S--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEA 368 (536)
Q Consensus 296 ~~~~~~~~~l~~~~-d-~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~ 368 (536)
.+++|+|+.++..+ + + .|.+||+.+++.. .+. +........|+|+|++++..+.+ +.+.++++...
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~---- 413 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR---- 413 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence 35669999888764 2 2 5999999888755 332 22234567899999987776653 34777776443
Q ss_pred ccceeeeccCCCCCeEEEEEcC
Q 009373 369 NVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 369 ~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
....+..+.+.+...+|+|
T Consensus 414 ---~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 ---VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---ceEEcccCCCCCCCCccCC
Confidence 2333444455666666665
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.28 E-value=6.2e-10 Score=105.84 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=149.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373 168 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 247 (536)
Q Consensus 168 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 247 (536)
|...++|....||.+++|+..+++....+.+. +..+..++-..|.+.-+..+. ...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~--------------~~~s~t~~~~~w~L~~~~s~~----------k~~ 58 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI--------------ASLSGTCTYTKWGLSADYSPM----------KWL 58 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc--------------hhccCcceeEEEEEEeccchH----------HHH
Confidence 44678999999999999999998877766542 222233344445432211000 000
Q ss_pred EeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCC
Q 009373 248 RLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG 321 (536)
Q Consensus 248 ~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~ 321 (536)
........+-+...++-|...|.|.+|+...++....+. |.+.|.++. .+-..|.+++ |..+..|+...+
T Consensus 59 ----~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 59 ----SLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK 134 (541)
T ss_pred ----hHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence 000111112244568889999999999999999988886 889999887 4445666766 899999999999
Q ss_pred cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-------CC-eE
Q 009373 322 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-------FP-WL 393 (536)
Q Consensus 322 ~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------~~-~l 393 (536)
+.++.+. .....+.+++++|||..+++++ +.|++||+.+. +.+.++.+|.++|++++|- +. +|
T Consensus 135 ~~~~~~~-~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 135 VIIRIWK-EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred eeeeeec-cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEeccccccceee
Confidence 9988886 4677889999999999999886 57999999999 7899999999999999993 23 45
Q ss_pred EEEeCCCcEEEEECCc
Q 009373 394 VSAAGDGKLSLIDVRK 409 (536)
Q Consensus 394 ~s~s~dg~i~vwd~~~ 409 (536)
.+...+..+.+|-+..
T Consensus 206 ssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEK 221 (541)
T ss_pred eccccccceeEEEEEc
Confidence 5555677788887765
No 235
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=4.6e-11 Score=115.79 Aligned_cols=286 Identities=14% Similarity=0.231 Sum_probs=183.4
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ce---eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCc
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FS---IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL 231 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-~~---~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~ 231 (536)
.+++.++..+|.|+-+|.++.-| +.+-|+... .. +..+.+-...-+.++ +...+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s- 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS- 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC-
Confidence 45677888999999999988776 455666543 22 233322222223343 34445555555556668887543
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEe-Eeee-ccccEEEEe---ecCC
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCL-KVLR-HSDWVYGLA---PHDT 303 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~---~~~~ 303 (536)
......+.+.+|+..|+.+.| +++.+++++.|-.+..||+++.... .... -......+. .++.
T Consensus 102 ---------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 102 ---------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred ---------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence 334566778899999999999 5678999999999999999876532 2222 112222333 5677
Q ss_pred EEEEecCCcEEEEeCCCCc-EEEEEccccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 304 TVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 304 ~l~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
.+++..+..|.+||++.|. ++..++ +|...|+.+.|..- ...+.+++.||+|++||........+ .......
T Consensus 173 vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~-----~~vtt~~ 246 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK-----RTVTTNF 246 (1081)
T ss_pred hhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc-----eeccccC
Confidence 7777778999999999875 555555 58889999988653 34688999999999999876532211 1122334
Q ss_pred CeEEEEEcC---C-eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec---------
Q 009373 382 PVNSLAFEF---P-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--------- 448 (536)
Q Consensus 382 ~v~~l~~~~---~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------- 448 (536)
+|..-.+-| . ++.---.+..+.+++-++....+ .......+...+.||...|..+-+-
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~---------n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW---------NVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred cceeccccccCceeEeccccCCeeeeeccccchhhhh---------ccccCCcceeeecCcchHHHHHhhhhcccccCCC
Confidence 555544433 1 22222222244444444322221 1112256677789999888776541
Q ss_pred -CC--EEEEecCCCeEEEEeCCch
Q 009373 449 -AD--RIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 449 -~~--~l~sg~~Dg~i~vW~~~~~ 469 (536)
.+ .|+|-+.|..+|+|.+.+.
T Consensus 318 d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CccceeEEEeecCCceEeeeccHH
Confidence 11 7999999999999999864
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.2e-09 Score=108.20 Aligned_cols=217 Identities=15% Similarity=0.109 Sum_probs=135.4
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeee--eCCCCceEEEEecCCCEEE-EEeCCCcEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDGFIHC 224 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg~i~v 224 (536)
.+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... +.+ ......++|||+.|+ +.+.+|...+
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceE
Confidence 34566788899999999999998877653 3599999998865432 222 223456789998776 5677888777
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CCeEEEEeC--CCceEeEeeeccc--cEEE
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDR--ALLKCLKVLRHSD--WVYG 297 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~--~~~~~~~~~~~~~--~v~~ 297 (536)
|.+.... .....+..+.+......| |++.|+..+. +|...+|.+ .+++......... .-..
T Consensus 267 y~~d~~~------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~ 334 (427)
T PRK02889 267 YTVNADG------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPR 334 (427)
T ss_pred EEEECCC------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceE
Confidence 7653211 112334445555566677 7777776554 456666654 4444322221222 1235
Q ss_pred EeecCCEEEEec-CC---cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-c--EEEEEcccCcccccc
Q 009373 298 LAPHDTTVASTS-GS---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-A--IHMYEIINDCTEANV 370 (536)
Q Consensus 298 ~~~~~~~l~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~--i~iwd~~~~~~~~~~ 370 (536)
++|+|+.++..+ ++ .|.+||+.+++..... . ........|+|+|+.|+.++.++ . +.+.++. +
T Consensus 335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g------ 404 (427)
T PRK02889 335 ISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G------ 404 (427)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C------
Confidence 669999988765 32 5999999988754332 2 22346789999999888776554 3 4444542 2
Q ss_pred ceeeeccCCCCCeEEEEEcC
Q 009373 371 LLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 371 ~~~~~~~~h~~~v~~l~~~~ 390 (536)
.....+..+.+.+...+|+|
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CceEEeecCCCCCCCCccCC
Confidence 22333344556666677765
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.25 E-value=8.6e-10 Score=95.86 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=159.7
Q ss_pred cccEEEEEEec---CCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCc--------eEEEEecCCCEEEEEeCCCcEEEE
Q 009373 158 TEAVLTVFVLA---SAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGC--------TIRAVAADKKLLVAGGTDGFIHCW 225 (536)
Q Consensus 158 ~~~V~~v~~~~---~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~~~l~sg~~dg~i~vw 225 (536)
+..+..|.|.. +|. .++-+-.+|.|.++..........+.+-.+ -.+.+++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34455555553 334 556667788999998766555555544321 223344778889999999999855
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCC-CceEeEee--eccccEEEEe
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVL--RHSDWVYGLA 299 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~-~~~~~~~~--~~~~~v~~~~ 299 (536)
+..... .......+.|.-+..-..| +++.+++|+.|+.+..||++ .++.+..- .|...|.++.
T Consensus 149 ~~t~~~-----------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 149 YETEMV-----------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY 217 (339)
T ss_pred ecceee-----------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence 543321 2344467789888888888 77899999999999999998 33444332 2888899987
Q ss_pred ---ecCCEEEEec-CCcEEEEeCCC-CcEEEEEccccccceEEEEEeCCC--CEEEEEcCCCcEEEEEcccCccccccce
Q 009373 300 ---PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLL 372 (536)
Q Consensus 300 ---~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 372 (536)
|.+.++++|+ |..|++||.++ ++++..- .-.+.|..+..+|.- ..|+++-.+| .+|-+......+ .-..
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e-~~~~ 293 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE-FQIV 293 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc-hhee
Confidence 6678999999 99999999994 6666554 356899999999953 3444444444 777777666432 1123
Q ss_pred eeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEE-EEECCc
Q 009373 373 VATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLS-LIDVRK 409 (536)
Q Consensus 373 ~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~-vwd~~~ 409 (536)
....+.|.+-+..-.|+. .+|+|++ .|..++ +|-.-+
T Consensus 294 ~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 294 LPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred eeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 445567777777777743 4677765 366644 665433
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.7e-09 Score=96.60 Aligned_cols=235 Identities=18% Similarity=0.238 Sum_probs=144.6
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE---eCCEEEEEecCCeEEEE
Q 009373 203 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL---DLTRIYSGSWDMTVRVW 278 (536)
Q Consensus 203 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~---~~~~l~s~s~dg~i~iw 278 (536)
..++++.-..++++..|-.|++|+-... ....++ .....|++++| .+..|+.|+. +-|.+|
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~ksst--------------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW 167 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSST--------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIW 167 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCCC--------------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEE
Confidence 3444454456888999999999986442 111222 23567999999 4456777765 568999
Q ss_pred eCCCc----e--------EeEeee--ccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEE
Q 009373 279 DRALL----K--------CLKVLR--HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR 340 (536)
Q Consensus 279 d~~~~----~--------~~~~~~--~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~ 340 (536)
..... . ....++ ...+|+++. ++|..+++++ +..|.|||+.++..+.... ...+.++-+.|
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkw 246 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKW 246 (445)
T ss_pred EcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEE
Confidence 75421 1 112233 235788887 7889999888 6889999999987665543 35677889999
Q ss_pred eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCC-C
Q 009373 341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGR-P 416 (536)
Q Consensus 341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~-~ 416 (536)
+|||.+|++++-|+..++|+.... .....+.-..+.|....|+| ..|++.+..-.++--.......... .
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q~------wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQS------WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred cCCCCEEEEecccceeeeehhccc------ceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCc
Confidence 999999999999999999965443 12222233455899999987 3555665554443332222111111 1
Q ss_pred CCCCceeeEEeeCCCe----eeeccccccEEEEEecCCEEEEecCCC
Q 009373 417 TSGKRVSRVIEVEPPQ----RMLHGFECNLLSVDIGADRIVCGGEEG 459 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~l~sg~~Dg 459 (536)
...+.+..+.++.+.. +.+-+.....++++++|.+||+.-..+
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 1111111111111111 122344556778888888888755433
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=2.4e-10 Score=107.12 Aligned_cols=158 Identities=14% Similarity=0.121 Sum_probs=114.8
Q ss_pred ccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373 159 EAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 237 (536)
Q Consensus 159 ~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 237 (536)
..|+|+.|-|.+. .++.+-.+|.+.++|.+. ..+...+.....+++..+.....-+.
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p~~~~~k~~~~f~i~t~ksk---------------- 277 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAPSYQALKDGDQFAILTSKSK---------------- 277 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCCcccccCCCCeeEEeeeecc----------------
Confidence 7899999999654 666677899999998721 11122222233344554443321110
Q ss_pred cCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CC
Q 009373 238 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS 311 (536)
Q Consensus 238 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~ 311 (536)
....++..+.--.+.|..++| |+.+|++.+.||.++|||..+.+.+...+ .-+...|++ |||+++++|+ |.
T Consensus 278 ---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 278 ---KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred ---ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 001233444444568999999 88999999999999999999988777766 445566665 9999999999 89
Q ss_pred cEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373 312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSH 342 (536)
Q Consensus 312 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~ 342 (536)
-|.||.+...+.+..-. +|...|+.++|+|
T Consensus 355 LVtVwSf~erRVVARGq-GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 355 LVTVWSFEERRVVARGQ-GHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEeccceEEEecc-ccccceeeEeecc
Confidence 99999999999988875 7999999999987
No 240
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=8.4e-11 Score=124.34 Aligned_cols=224 Identities=17% Similarity=0.233 Sum_probs=165.2
Q ss_pred CccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEE--EEecCCCEEEEEeCCCcEE
Q 009373 147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIR--AVAADKKLLVAGGTDGFIH 223 (536)
Q Consensus 147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~--~~~~~~~~l~sg~~dg~i~ 223 (536)
++..-..++.|-..|.++.-+|...+.+||+.||.|++|....++.+..+...+ ..+. .++..|+.+..+..||.+.
T Consensus 2197 ~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2197 SRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred cccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCcee
Confidence 333445666778889999999999999999999999999999888877764322 3343 3457899999999999999
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEe---cCCeEEEEeCCCceEeEe--eeccccEEEE
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS---WDMTVRVWDRALLKCLKV--LRHSDWVYGL 298 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~--~~~~~~v~~~ 298 (536)
+|.+. ..+....+.|.....++.|-+..+++++ .++.+.+||..-...... ..|...++++
T Consensus 2277 l~q~~--------------pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2277 LWQAS--------------PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred ecccC--------------CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence 99874 2356667789999999999667777764 578999999653322222 2377777777
Q ss_pred e--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373 299 A--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT 375 (536)
Q Consensus 299 ~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 375 (536)
+ |...++++|+ +|.|++||++..+....+.. ++ ...++++|+..|.++||++.... .+.+
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~------ll~~ 2405 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFG------LLHT 2405 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccc------hhhc
Confidence 6 8999999999 89999999998887766642 33 56789999999999999998773 2222
Q ss_pred cc---CCCC--Ce--EEEEEc-CCeEEEEeCCCc
Q 009373 376 WI---PHTG--PV--NSLAFE-FPWLVSAAGDGK 401 (536)
Q Consensus 376 ~~---~h~~--~v--~~l~~~-~~~l~s~s~dg~ 401 (536)
+. +|.+ .+ ..+... .++|.+++.||+
T Consensus 2406 ~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2406 FPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred CchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 21 1111 11 222222 278889888874
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=4.7e-09 Score=104.58 Aligned_cols=196 Identities=13% Similarity=0.030 Sum_probs=129.2
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeC---CCcEEEEECCCCceeeeeCCCCce--EEEEecCCCEEE-EEeCCCc--E
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLV-AGGTDGF--I 222 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~---dg~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~-sg~~dg~--i 222 (536)
.+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++... +..+... ..+++|+|+.|+ +.+.+|. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 4667788899999999999998887764 4689999999886533 2222222 346779998765 5566665 6
Q ss_pred EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC--eEEEEeCCCceEeEeeeccccEE-
Q 009373 223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDWVY- 296 (536)
Q Consensus 223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~v~- 296 (536)
++||+.++. ...+..+.+......| +++.++..+. +| .|.++|+.+++..........+.
T Consensus 273 y~~d~~~~~--------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~ 338 (435)
T PRK05137 273 YTMDLRSGT--------------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST 338 (435)
T ss_pred EEEECCCCc--------------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence 667776542 2334445555666777 7787777663 33 68888987665543332333333
Q ss_pred -EEeecCCEEEEec-C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC------CcEEEEEcccC
Q 009373 297 -GLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED------GAIHMYEIIND 364 (536)
Q Consensus 297 -~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d------g~i~iwd~~~~ 364 (536)
.++|+|+.++... + ..|.+||+..+.. ..+.. ...+....|+|+|+.|+..+.+ ..+.++|+...
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 3569999887765 2 3588889865543 33332 2346788999999988765443 25777777654
No 242
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=8.3e-11 Score=110.38 Aligned_cols=204 Identities=20% Similarity=0.247 Sum_probs=149.7
Q ss_pred eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE
Q 009373 193 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 268 (536)
Q Consensus 193 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 268 (536)
+..+.+|...|.++. .+.+.+++++.|.+|++|.++... .+.....+..++..|..+|.++.| +..+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg------D~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~- 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG------DEIGTSACQFTYQAHKKPIHDIGFLADLRSIA- 800 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc------CccccceeeeEhhhccCcccceeeeeccceee-
Confidence 345677888887776 567789999999999999986532 122234578889999999999999 444554
Q ss_pred EecCCeEEEEeCCCceEeEeee------ccccEEEEee-cCCEEEEe-c-CCcEEEEeCCCCcEEEEEc----cccccce
Q 009373 269 GSWDMTVRVWDRALLKCLKVLR------HSDWVYGLAP-HDTTVAST-S-GSDVYIWDTNSGCLLTVVN----GAHVGNT 335 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~-~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~----~~~~~~i 335 (536)
+.||.|.+||.--++.+.... ..+.|.++.. +...+.++ + ..+|+++|.+.++....++ .+...-+
T Consensus 801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 558999999987777665433 2344566653 55555555 4 7999999999988766654 2345678
Q ss_pred EEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE-cCCeEEEEeCCCcEEE-EECCcc
Q 009373 336 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSL-IDVRKL 410 (536)
Q Consensus 336 ~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~v-wd~~~~ 410 (536)
.+++..+.|+.+++|-.+|+|.+.|.+++ ..+..+.+.......++- +...|+....|.++.| |..-++
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G------~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNG------KVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCC------ceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCC
Confidence 99999999999999999999999999999 556656555544444443 3367888888888888 875543
No 243
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.19 E-value=1.1e-08 Score=100.77 Aligned_cols=265 Identities=10% Similarity=0.031 Sum_probs=167.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc---------eEE--EEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC---------TIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 238 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~---------~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 238 (536)
+..+++++.+|.+.-+|.++|+.+........ ... ....++..++.++.+|.+..+|.++++..-
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W---- 144 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAW---- 144 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcc----
Confidence 66788888899999999999998877643220 010 122356778889999999999998885211
Q ss_pred CcccccceEEeeCCccCEE-EEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEE-------EEeecCCEEEEecC
Q 009373 239 GSEKQNTQFRLWEHEGPIT-SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY-------GLAPHDTTVASTSG 310 (536)
Q Consensus 239 ~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~-------~~~~~~~~l~~~~d 310 (536)
+.... +.+. +....++.++.++.++.+..+|..+|+.+.......+.. -+..++..++...+
T Consensus 145 ---------~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~ 214 (394)
T PRK11138 145 ---------QTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN 214 (394)
T ss_pred ---------cccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC
Confidence 11111 1121 122356778888889999999999999988876332211 11134445555558
Q ss_pred CcEEEEeCCCCcEEEEEcccccc------ceEEEEEeC--CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373 311 SDVYIWDTNSGCLLTVVNGAHVG------NTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 311 ~~i~i~d~~~~~~~~~~~~~~~~------~i~~l~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
+.+..+|..+|+.+......... ....+..+| .+..++.++.+|.+..+|..+++ .+-... .+.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~------~~W~~~--~~~ 286 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ------IVWKRE--YGS 286 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC------EEEeec--CCC
Confidence 99999999999876654311110 011111122 24567777889999999998883 222111 112
Q ss_pred eEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEE
Q 009373 383 VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVR 462 (536)
Q Consensus 383 v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~ 462 (536)
...+...++.|+.++.+|.+..+|..++...+..... .+ ....+....+.+++.++.||.|.
T Consensus 287 ~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----------------~~--~~~~sp~v~~g~l~v~~~~G~l~ 348 (394)
T PRK11138 287 VNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL----------------LH--RLLTAPVLYNGYLVVGDSEGYLH 348 (394)
T ss_pred ccCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc----------------CC--CcccCCEEECCEEEEEeCCCEEE
Confidence 2234556788999999999999999887554432110 00 00111222367888899999999
Q ss_pred EEeCCchhhHHH
Q 009373 463 IWNFSQAFEIER 474 (536)
Q Consensus 463 vW~~~~~~~~~~ 474 (536)
+.|..+|+.+.+
T Consensus 349 ~ld~~tG~~~~~ 360 (394)
T PRK11138 349 WINREDGRFVAQ 360 (394)
T ss_pred EEECCCCCEEEE
Confidence 999999876543
No 244
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.6e-10 Score=108.59 Aligned_cols=240 Identities=17% Similarity=0.194 Sum_probs=160.5
Q ss_pred cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-------CceeeeeCCCCceEEEEecCCCEEEEEeCCCc
Q 009373 149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-------GFSIASSKPLGCTIRAVAADKKLLVAGGTDGF 221 (536)
Q Consensus 149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~ 221 (536)
..+..+.||+..|..++--.+.+-+++++.|++|++|.+.. ..+..+++.|..+|.++..-...-..++.||.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g 805 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG 805 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence 45678889999999998888888999999999999999853 24667788999988877643333344567899
Q ss_pred EEEEEcccCccceecccCcccccceEEe--eCCccCEEEEEE-eCCEEEEE-ecCCeEEEEeCCCceEeEeee------c
Q 009373 222 IHCWRAVEVLPHLFDISGSEKQNTQFRL--WEHEGPITSLAL-DLTRIYSG-SWDMTVRVWDRALLKCLKVLR------H 291 (536)
Q Consensus 222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~------~ 291 (536)
|++||.--+... .....- .+..+.|.++.- +...++.| +...+|+++|.+..+-...++ .
T Consensus 806 iHlWDPFigr~L----------aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 806 IHLWDPFIGRLL----------AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred ceeecccccchh----------HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 999996443210 000011 122334555544 44445444 789999999999887766665 2
Q ss_pred cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE-EEcccCccc
Q 009373 292 SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM-YEIINDCTE 367 (536)
Q Consensus 292 ~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i-wd~~~~~~~ 367 (536)
...+.+++ +.|+.++++- +|.|.+.|.++|+.+..... -......++ .|..+.|+....|.++.+ |...++
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldg--- 950 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG--- 950 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---
Confidence 23455554 8888888877 89999999999998877642 222233332 355677787778888888 876665
Q ss_pred cccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEE
Q 009373 368 ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 406 (536)
Q Consensus 368 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 406 (536)
......++...+..-+.--+..|+++.....+.||.
T Consensus 951 ---imh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 951 ---IMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred ---eeeeccCCCCcchhhhhccCceeEEeccCcEEEEEe
Confidence 233333333333333333345677777777788885
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.7e-08 Score=94.27 Aligned_cols=284 Identities=12% Similarity=0.134 Sum_probs=168.4
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEE-----eC-----CCcEEEEEc
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG-----GT-----DGFIHCWRA 227 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-----~~-----dg~i~vwd~ 227 (536)
..+++..+++++|+++|.+. +..++|++..++..+.+.......-+-++|.+.+|.+= .. .-.+.+|++
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 44467788999898877654 67899999998866555555444445566878777652 11 234779999
Q ss_pred ccCccceecccCc--c----------c--------c--------cceEEeeCCccCEEEEEEeCC----EEE-----EEe
Q 009373 228 VEVLPHLFDISGS--E----------K--------Q--------NTQFRLWEHEGPITSLALDLT----RIY-----SGS 270 (536)
Q Consensus 228 ~~~~~~~~~~~~~--~----------~--------~--------~~~~~~~~h~~~v~~l~~~~~----~l~-----s~s 270 (536)
+++... +.+... . . . .....-.-|...|+.+.+.+. .++ ..+
T Consensus 113 et~~~~-s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 113 ETGVQR-SQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred ccceeh-hheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 884321 100000 0 0 0 000011123344555555221 222 233
Q ss_pred cCCeEEEEeCCCceEeEeee-----ccccEEEEe--ecCC--EEEEec--C---------CcEEEEeCCCCcEEEEEccc
Q 009373 271 WDMTVRVWDRALLKCLKVLR-----HSDWVYGLA--PHDT--TVASTS--G---------SDVYIWDTNSGCLLTVVNGA 330 (536)
Q Consensus 271 ~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~--~~~~--~l~~~~--d---------~~i~i~d~~~~~~~~~~~~~ 330 (536)
.-+.|+||...-......+. ..+.| .+. ..|. ++++.+ | .+++++++........+ .
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~ 268 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--L 268 (566)
T ss_pred CCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--C
Confidence 44567777654222111111 11111 122 2222 222222 3 24888888744444443 3
Q ss_pred cccceEEEEEeCCCCEEEE--EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEE
Q 009373 331 HVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLS 403 (536)
Q Consensus 331 ~~~~i~~l~~~~~~~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~ 403 (536)
..++|.++.|+|++.-+++ |-.-..+.|||++.. ++..+ ..++=+++-|+| ++|+.+|-+ |.|-
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-------~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-------PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-------EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceE
Confidence 6889999999999976554 566788999998765 34333 467778999987 677766654 8999
Q ss_pred EEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecC------CCeEEEEeCCchhhHHH
Q 009373 404 LIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFSQAFEIER 474 (536)
Q Consensus 404 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~i~vW~~~~~~~~~~ 474 (536)
|||+.+.+... .+......++.++++|.+++|+.. |+.++||++.....-+.
T Consensus 340 vwDv~n~K~i~-------------------~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 340 VWDVPNRKLIA-------------------KFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred EEeccchhhcc-------------------ccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 99998843332 234455778899999998877764 78899999876544443
No 246
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=2.8e-08 Score=98.48 Aligned_cols=206 Identities=12% Similarity=0.089 Sum_probs=127.3
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe---cCCeEEEEeCCCceEeEeeecccc-
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS---WDMTVRVWDRALLKCLKVLRHSDW- 294 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~- 294 (536)
.|.++|.... ....+..+...+.+.+| +++.|+..+ .+..|.+||+.+++..........
T Consensus 180 ~l~~~d~dg~--------------~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~ 245 (429)
T PRK03629 180 ELRVSDYDGY--------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN 245 (429)
T ss_pred eEEEEcCCCC--------------CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc
Confidence 6888877543 12334456678888999 777877654 245799999988865443332222
Q ss_pred -EEEEeecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCcEEEE--EcccCcc
Q 009373 295 -VYGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMY--EIINDCT 366 (536)
Q Consensus 295 -v~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iw--d~~~~~~ 366 (536)
-..++|+|+.|+... ++ .|++||+.+++..... .+...+....|+|+|+.|+..+. +|...|| |+.++.
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~- 322 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA- 322 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-
Confidence 245669999887653 34 5999999988765443 24456788999999998876665 4555555 544441
Q ss_pred ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccccc
Q 009373 367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 441 (536)
Q Consensus 367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (536)
...+..+........|+| ++|+..+.+ ..|.+||+.++... .+. ......
T Consensus 323 ------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-------------~Lt------~~~~~~ 377 (429)
T PRK03629 323 ------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-------------VLT------DTFLDE 377 (429)
T ss_pred ------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-------------EeC------CCCCCC
Confidence 122223334455677876 567665543 35888998764211 000 111122
Q ss_pred EEEEEecCCEEEEecCCCe---EEEEeCCc
Q 009373 442 LLSVDIGADRIVCGGEEGI---VRIWNFSQ 468 (536)
Q Consensus 442 v~~~~~~~~~l~sg~~Dg~---i~vW~~~~ 468 (536)
..++++++.+|+.++.|+. +.+++++.
T Consensus 378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3467788888888887765 67777754
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.13 E-value=5.1e-09 Score=93.09 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=132.7
Q ss_pred eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC----CceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373 155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED----GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~ 228 (536)
..-..+++++.+.++...|+.|-..|++.-+.+.. ...++....|.+.+.++- .....+++.+.|..+.---.+
T Consensus 65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE 144 (404)
T ss_pred hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence 34457889999999999999999999999987643 345566677888887765 446688888888766322222
Q ss_pred cCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCC--CceEeEeee-ccccEEEEe--ecCC
Q 009373 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA--LLKCLKVLR-HSDWVYGLA--PHDT 303 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~~--~~~~ 303 (536)
.+.. . --..+ ...-+++.++-.+.+.|...|.|.+-.+. .-..+.++. |.+.+.++. +...
T Consensus 145 ~~~~----------l-g~Y~~---~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~ 210 (404)
T KOG1409|consen 145 SGNR----------L-GGYNF---ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR 210 (404)
T ss_pred cCCc----------c-cceEe---eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc
Confidence 2210 0 00000 01111222222244455555555554432 334444554 888999988 5567
Q ss_pred EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
.++++. |..+.+||+.-++-......+|...|..+...+--+.+++++.||.|.+|++...
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 788887 8999999998766555555579999999998888889999999999999998653
No 248
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.13 E-value=6.1e-08 Score=95.41 Aligned_cols=260 Identities=11% Similarity=0.066 Sum_probs=158.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEe
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 249 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 249 (536)
+..++.++.+|.+..+|.++|+.+...........+-...+..++.++.+|.+..+|..+++..- ..... ......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W-~~~~~---~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKW-TVNLD---VPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEee-eecCC---CCcccc
Confidence 56677888999999999999998887654432111111235677788889999999998886321 11100 000001
Q ss_pred eCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecccc--------EE----E-EeecCCEEEEecCCcEEEE
Q 009373 250 WEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW--------VY----G-LAPHDTTVASTSGSDVYIW 316 (536)
Q Consensus 250 ~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------v~----~-~~~~~~~l~~~~d~~i~i~ 316 (536)
.+...++ ..++.++.++.+|.+..+|..+++.........+ .. + +..++..++++.++.+..+
T Consensus 196 ~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 196 RGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 1111222 2345677788899999999999987766541110 00 1 1134445555558999999
Q ss_pred eCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEEEEcCCeEEE
Q 009373 317 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLVS 395 (536)
Q Consensus 317 d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s 395 (536)
|..+|+.+.....+. ...+. ..+..++.++.+|.+..+|..++. .+-.... ......+....+.+|+.
T Consensus 272 d~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~------~~W~~~~~~~~~~~sp~v~~g~l~v 340 (394)
T PRK11138 272 DLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGV------ELWSQSDLLHRLLTAPVLYNGYLVV 340 (394)
T ss_pred ECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCc------EEEcccccCCCcccCCEEECCEEEE
Confidence 999998876653211 11222 246678888899999999998873 2221111 01122233345688999
Q ss_pred EeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeC
Q 009373 396 AAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 466 (536)
Q Consensus 396 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~ 466 (536)
++.||.|.+.|..+++..++... .+ ..........++.|+.++.||.|+.++.
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~-----------------~~-~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKV-----------------DS-SGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEc-----------------CC-CcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 99999999999988643322110 00 0111122234668888999999988765
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3.6e-08 Score=98.32 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=127.9
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec---CCeEEEEeCCCceEeEeeeccccE
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLKCLKVLRHSDWV 295 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~v 295 (536)
.|.++|.... ....+..|...+.+..| +++.|+..+. +..|.+||+.+++......+.+.+
T Consensus 183 ~l~~~d~dg~--------------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~ 248 (435)
T PRK05137 183 RLAIMDQDGA--------------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMT 248 (435)
T ss_pred EEEEECCCCC--------------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcc
Confidence 6777776443 23445677888999999 7788877663 468999999988764433344444
Q ss_pred E--EEeecCCEEEEe-c-CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CC--cEEEEEcccCcc
Q 009373 296 Y--GLAPHDTTVAST-S-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCT 366 (536)
Q Consensus 296 ~--~~~~~~~~l~~~-~-d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~ 366 (536)
. .++|+|+.++.. + ++ .|.+||+.+++... +. .+........|+|||+.|+..+. +| .|+++|+..+.
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~- 325 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN- 325 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-
Confidence 3 455899877543 3 44 48888998876544 32 35556677899999998887664 33 57777876542
Q ss_pred ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccccc
Q 009373 367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 441 (536)
Q Consensus 367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (536)
...+..+.+.+....|+| +.|+..+.+ ..|.+||+...... ....+....
T Consensus 326 ------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-------------------~lt~~~~~~ 380 (435)
T PRK05137 326 ------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-------------------ILTSGFLVE 380 (435)
T ss_pred ------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-------------------eccCCCCCC
Confidence 222233344566778876 577665543 35788887542110 001112223
Q ss_pred EEEEEecCCEEEEecC-C-----CeEEEEeCCch
Q 009373 442 LLSVDIGADRIVCGGE-E-----GIVRIWNFSQA 469 (536)
Q Consensus 442 v~~~~~~~~~l~sg~~-D-----g~i~vW~~~~~ 469 (536)
...++++++.|+..+. . ..+.+.++..+
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 3466777776554333 2 35777787654
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.11 E-value=1.8e-08 Score=100.41 Aligned_cols=194 Identities=14% Similarity=0.069 Sum_probs=123.0
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEE-EEeCCC--cEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLV-AGGTDG--FIH 223 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~-sg~~dg--~i~ 223 (536)
.+.+..+...+.+.+|+|+|++|+.++.+ ..|++||+.+++........ .....+++|+++.|+ +.+.++ .|+
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 45666777889999999999999887654 47999999988654322211 122356779998765 445444 588
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC-C--eEEEEeCCCceEeEeeeccccEE--
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSDWVY-- 296 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~v~-- 296 (536)
+|++.++. ...+..+........| +++.|+..+.. + .|.++|+.+++......+...+.
T Consensus 262 ~~d~~~~~--------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 262 VMDLDGKQ--------------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP 327 (417)
T ss_pred EEECCCCC--------------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence 88876652 1223333333445566 77777766543 3 58888887766543332333333
Q ss_pred EEeecCCEEEEec-CC---cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC---cEEEEEc
Q 009373 297 GLAPHDTTVASTS-GS---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AIHMYEI 361 (536)
Q Consensus 297 ~~~~~~~~l~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg---~i~iwd~ 361 (536)
.++++++.++.+. ++ .|.+||+.++.... +.. ........|+|+|+.|+..+.++ .+.+.+.
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 4458899888776 43 68999998865433 221 12234568999999888777654 3444443
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.10 E-value=5.8e-08 Score=85.95 Aligned_cols=264 Identities=16% Similarity=0.137 Sum_probs=152.1
Q ss_pred cccEEEEEEecCCCEEE-EEeCCCcEEEEECCCCceeeeeCCCCceE--EEEecCCC-EEEEEeCCCcEEEEEcccCccc
Q 009373 158 TEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKK-LLVAGGTDGFIHCWRAVEVLPH 233 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~ 233 (536)
-+.|.-+.|..|.-+++ ....|+.|.+|++...+-...+......+ .+++|+|+ .|.+...+-.|.||.+.+....
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 45677788888776555 45678899999998877766665555544 45669995 6677788999999999775421
Q ss_pred eecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe------------------------------------cCCeE
Q 009373 234 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS------------------------------------WDMTV 275 (536)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s------------------------------------~dg~i 275 (536)
. +.-....+..++| ++++.+.++ ++..+
T Consensus 128 ~--------------~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 128 L--------------LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred E--------------ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 1 1111112223333 222222221 12233
Q ss_pred EEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEE----------------------------
Q 009373 276 RVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLL---------------------------- 324 (536)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~---------------------------- 324 (536)
.+||.--.-.+..+...-.+..++ |.+++++.|+ |+.+++.+--+-+..
T Consensus 194 aVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred EEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 444422111111222222333333 5666666666 666555432211110
Q ss_pred --------------------------------EEEc-----cccccceEEEEEeCCCCEEEEEcCC--CcEEEEEcccCc
Q 009373 325 --------------------------------TVVN-----GAHVGNTKSLARSHTGDFLFTGGED--GAIHMYEIINDC 365 (536)
Q Consensus 325 --------------------------------~~~~-----~~~~~~i~~l~~~~~~~~l~tg~~d--g~i~iwd~~~~~ 365 (536)
..++ ......+.-++|++|..+++|-.+. ..+-+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 0000 0112346778999999998886543 568999998762
Q ss_pred cccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEE
Q 009373 366 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL 443 (536)
Q Consensus 366 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 443 (536)
+...-....+|....|+| ..|+.+.....+++|..........+ ..|....-+
T Consensus 354 -------l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP------------------~~GF~i~~l 408 (447)
T KOG4497|consen 354 -------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP------------------KKGFNIQKL 408 (447)
T ss_pred -------hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC------------------CCCceeeeE
Confidence 233334567899999998 56777777778999987653222111 233344445
Q ss_pred EEEecCCEEEEecCCCe
Q 009373 444 SVDIGADRIVCGGEEGI 460 (536)
Q Consensus 444 ~~~~~~~~l~sg~~Dg~ 460 (536)
.+..+|+.++-.+.|..
T Consensus 409 ~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 409 QWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EecCCCcEEEEEcCCce
Confidence 55567778888888864
No 252
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.09 E-value=2.9e-09 Score=91.00 Aligned_cols=200 Identities=18% Similarity=0.210 Sum_probs=130.1
Q ss_pred cCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccE-------EEEeecCCEEEEecC------CcEEEEeCCC
Q 009373 254 GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV-------YGLAPHDTTVASTSG------SDVYIWDTNS 320 (536)
Q Consensus 254 ~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v-------~~~~~~~~~l~~~~d------~~i~i~d~~~ 320 (536)
++-.....-++.++++..||.+.+++.+.. ..+.+.-++ .++...++++.++.- +..+.|+++.
T Consensus 92 ~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 92 DPNDACTMTDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred CCcccccccCCceEecCCCceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccc
Confidence 344455556788999999999999987651 111122211 222245555555442 4456666654
Q ss_pred CcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEE
Q 009373 321 GCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSA 396 (536)
Q Consensus 321 ~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~ 396 (536)
.+.+..-.. ....|++++-+|.. +.+++|+.||.+.+||.+... .++..+..|..+|+.+-|+| ..|+++
T Consensus 169 ~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 169 IKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred ccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEe
Confidence 433222211 22348999999965 567788999999999999884 46777889999999999975 799999
Q ss_pred eCCCcEEEEECCcc-cccC-------CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEe
Q 009373 397 AGDGKLSLIDVRKL-LRSG-------RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 465 (536)
Q Consensus 397 s~dg~i~vwd~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~ 465 (536)
+.||.+-.||..+. .... ....+..+....++. ..+......|.+++..+..|++|+.-+.|++++
T Consensus 243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~---~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEIT---SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeee---ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999998742 1110 001111111111111 123444566778888899999999999999875
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.09 E-value=1.7e-08 Score=87.84 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=82.8
Q ss_pred CccCEEEEEE--eCCEEEE--EecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec----CCcEEEEeCCCC
Q 009373 252 HEGPITSLAL--DLTRIYS--GSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS----GSDVYIWDTNSG 321 (536)
Q Consensus 252 h~~~v~~l~~--~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~----d~~i~i~d~~~~ 321 (536)
..++|.+++| +++.|++ |..++.|.+||++ ++.+..+. ...+..+. |+|++++.++ .|.+.+||+++.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3457999999 5666544 4567899999996 55555554 34445554 9999999876 367999999998
Q ss_pred cEEEEEccccccceEEEEEeCCCCEEEEEcC------CCcEEEEEcccC
Q 009373 322 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE------DGAIHMYEIIND 364 (536)
Q Consensus 322 ~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~------dg~i~iwd~~~~ 364 (536)
+.+.... |. .++.++|+|+|++|++++. |..++||+....
T Consensus 136 ~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 136 KKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 8887763 43 4789999999999999874 778999998543
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=2.3e-07 Score=87.13 Aligned_cols=294 Identities=11% Similarity=0.088 Sum_probs=185.8
Q ss_pred cccEEEEEEecCCCEEEEEeCCC---------------cEEEEECCCCceeeeeCCCCce-----EEEEecCCCEEEEEe
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDS---------------IVRMWHLEDGFSIASSKPLGCT-----IRAVAADKKLLVAGG 217 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg---------------~v~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~l~sg~ 217 (536)
...|.-+.|+|.+++|.|=+..+ .+.+||..+|..+..+.....+ +..++.+..+++--
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 35688899999999999876543 4999999999999888665443 77888777765544
Q ss_pred CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEE-----EEecCCeEEEEeCCCceEeEe
Q 009373 218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIY-----SGSWDMTVRVWDRALLKCLKV 288 (536)
Q Consensus 218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~-----s~s~dg~i~iwd~~~~~~~~~ 288 (536)
....++|+++ ++... ..+...+. ...|....+. +..|+ ....++++++|.+..++.+.+
T Consensus 150 v~~sl~i~e~-t~n~~---------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t 217 (561)
T COG5354 150 VGSSLYIHEI-TDNIE---------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT 217 (561)
T ss_pred ccCeEEEEec-CCccc---------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee
Confidence 3457889987 33210 11111111 2345555552 22333 246778999999886666554
Q ss_pred ee---ccccEEEEeecCCEEEEe------------cCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE--Ec
Q 009373 289 LR---HSDWVYGLAPHDTTVAST------------SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GG 351 (536)
Q Consensus 289 ~~---~~~~v~~~~~~~~~l~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t--g~ 351 (536)
.. ..+--.-..+.|+++..- +...+++++++........ ...++|...+|.|.++.+++ |.
T Consensus 218 k~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~ 295 (561)
T COG5354 218 KNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGY 295 (561)
T ss_pred eeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecc
Confidence 33 111111122445444321 1246888888744333322 46889999999999887665 45
Q ss_pred CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEEEEECCcccccCCCCCCCceeeEE
Q 009373 352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVI 426 (536)
Q Consensus 352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~ 426 (536)
.+-.+.++|++.. .. +......=+.+.|+| ++++.++-| |.|-+||.....
T Consensus 296 ~pa~~s~~~lr~N------l~---~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf--------------- 351 (561)
T COG5354 296 MPASVSVFDLRGN------LR---FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF--------------- 351 (561)
T ss_pred cccceeecccccc------eE---EecCCcccccccccCcccEEEEecCCccccceEEeccCCce---------------
Confidence 7888999999876 11 123344556778877 677777665 789999986521
Q ss_pred eeCCCeeeeccccccEEEEEecCCEEEEec------CCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccC
Q 009373 427 EVEPPQRMLHGFECNLLSVDIGADRIVCGG------EEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK 500 (536)
Q Consensus 427 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~------~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (536)
.....+.+.......+++++.++.+.- .|..|+||++...... ..+.+.|.|.
T Consensus 352 ---~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------------------el~~~~W~p~ 410 (561)
T COG5354 352 ---KVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------------------ELTNITWDPS 410 (561)
T ss_pred ---EEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------------------hhhhccccCC
Confidence 111134555566777888888554432 4888999999865433 1356778887
Q ss_pred CCCcceeEeec
Q 009373 501 GGRTDQCSVAA 511 (536)
Q Consensus 501 g~~~~~~~~~~ 511 (536)
|+...+.|...
T Consensus 411 ~~~~ttsSs~~ 421 (561)
T COG5354 411 GQYVTTSSSCP 421 (561)
T ss_pred cccceeeccCC
Confidence 77777655554
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=8.3e-09 Score=91.74 Aligned_cols=254 Identities=11% Similarity=0.160 Sum_probs=150.9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCC------------ccCEEEEEE----eCCEEE
Q 009373 204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH------------EGPITSLAL----DLTRIY 267 (536)
Q Consensus 204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~----~~~~l~ 267 (536)
..+...|.+|++|..+|.|.++.-+..... .......++.| ...|..+.| +...++
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKG--------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred EEeecccceEeecCCCCeEEEeeccccccc--------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 344578999999999999999864332110 01112222233 245777888 345788
Q ss_pred EEecCCeEEEEeCCCce-----------------------------------EeEeee--ccccEEEEe--ecCCEEEEe
Q 009373 268 SGSWDMTVRVWDRALLK-----------------------------------CLKVLR--HSDWVYGLA--PHDTTVAST 308 (536)
Q Consensus 268 s~s~dg~i~iwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~--~~~~~l~~~ 308 (536)
..+.|++|++|.+.... +.+.+. |.-.|++++ .+...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88999999999764221 111111 455566666 678888998
Q ss_pred cCCcEEEEeCCCCcEEE---EEcc----ccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccc----------cc
Q 009373 309 SGSDVYIWDTNSGCLLT---VVNG----AHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEA----------NV 370 (536)
Q Consensus 309 ~d~~i~i~d~~~~~~~~---~~~~----~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~----------~~ 370 (536)
.|=.|.+|++.--..-. .++. ....-|++..|+|.. +.++-.+..|+|++-|++....-. ..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 89999999987543222 2221 123468899999965 577888899999999998542110 00
Q ss_pred ceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCce--eeEEeeCCCeeeeccccccEEEEE
Q 009373 371 LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV--SRVIEVEPPQRMLHGFECNLLSVD 446 (536)
Q Consensus 371 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~ 446 (536)
....-+..-...|..+.|+. +++++-+. -+|++||+....++.....-... ..+..+.+...+ -.-+.+.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I-----fdKFec~ 336 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI-----FDKFECS 336 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch-----hheeEEE
Confidence 11111222345778889964 56666543 58999999654322111000000 000000000001 1123455
Q ss_pred ecCC--EEEEecCCCeEEEEeCCchhh
Q 009373 447 IGAD--RIVCGGEEGIVRIWNFSQAFE 471 (536)
Q Consensus 447 ~~~~--~l~sg~~Dg~i~vW~~~~~~~ 471 (536)
++|+ +++|||....+++++...|..
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCcc
Confidence 6666 999999999999999766543
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=6.3e-08 Score=96.69 Aligned_cols=215 Identities=15% Similarity=0.070 Sum_probs=132.9
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeee--CCCCceEEEEecCCCEEE-EEeCCC--cE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASS--KPLGCTIRAVAADKKLLV-AGGTDG--FI 222 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~-sg~~dg--~i 222 (536)
.+.+..|...+....|+|||+.|+..+.+ ..|.+||+.+++..... .++ .....++|+|+.|+ +.+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~-~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL-NGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC-cCCeEECCCCCEEEEEEccCCCceE
Confidence 45666778889999999999988876644 36899999988654322 222 22357789998776 444555 57
Q ss_pred EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC--eEEEEeCCCceEeEeee--ccccE
Q 009373 223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLR--HSDWV 295 (536)
Q Consensus 223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~--~~~~v 295 (536)
++||+.++. ...+..+........| +++.++..+. +| .|.++|+.+++...... .....
T Consensus 270 y~~d~~~~~--------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~ 335 (430)
T PRK00178 270 YVMDLASRQ--------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR 335 (430)
T ss_pred EEEECCCCC--------------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence 788887653 2223344444555667 6777765553 33 57778887776433222 11223
Q ss_pred EEEeecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-C--cEEEEEcccCcccc
Q 009373 296 YGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-G--AIHMYEIINDCTEA 368 (536)
Q Consensus 296 ~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-g--~i~iwd~~~~~~~~ 368 (536)
..++|+++.++... ++ .|.++|+.+++... +... .......|+|+|+.++..+.+ | .+.++++...
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~---- 408 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR---- 408 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence 35668999887765 33 58889998886533 3221 122356899999988776543 3 3566666433
Q ss_pred ccceeeeccCCCCCeEEEEEcC
Q 009373 369 NVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 369 ~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
....+..+.+.+...+|+|
T Consensus 409 ---~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 409 ---VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ---ceEECcCCCCCcCCCccCC
Confidence 1223334445566666665
No 257
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.07 E-value=1.8e-07 Score=85.39 Aligned_cols=214 Identities=15% Similarity=0.090 Sum_probs=139.1
Q ss_pred CCCcEEEEECCCCceeeeeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCcc
Q 009373 178 YDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG 254 (536)
Q Consensus 178 ~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 254 (536)
.+|+|..||..+|+.+..... ....+....+++..+++++.++.+..||..+++. .........
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~-------------~W~~~~~~~ 67 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV-------------LWRFDLPGP 67 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE-------------EEEEECSSC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE-------------EEEeecccc
Confidence 368999999999999887743 3333333445777888889999999999988752 111111110
Q ss_pred CEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEee-ecc----c--cEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEE
Q 009373 255 PITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHS----D--WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTV 326 (536)
Q Consensus 255 ~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~----~--~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~ 326 (536)
........++.++.++.|+.+..+|..+++.+... ... . ........+..++++. ++.|..+|+.+|+.+..
T Consensus 68 ~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 68 ISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp GGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 00013447788888889999999999999999884 311 1 1122334566666666 89999999999999887
Q ss_pred Ecccccc---------ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE-EEEcCCeEEEE
Q 009373 327 VNGAHVG---------NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEFPWLVSA 396 (536)
Q Consensus 327 ~~~~~~~---------~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~ 396 (536)
....... .+..-....++ .++.++.+|.+.-+|+.++. .+.... ...+.. ...+...|+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~------~~w~~~--~~~~~~~~~~~~~~l~~~ 218 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE------KLWSKP--ISGIYSLPSVDGGTLYVT 218 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE------EEEEEC--SS-ECECEECCCTEEEEE
T ss_pred eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC------EEEEec--CCCccCCceeeCCEEEEE
Confidence 7532211 11222222234 77778888864444998883 222222 223444 55567889988
Q ss_pred eCCCcEEEEECCccccc
Q 009373 397 AGDGKLSLIDVRKLLRS 413 (536)
Q Consensus 397 s~dg~i~vwd~~~~~~~ 413 (536)
+.++.|..||+++++..
T Consensus 219 ~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ETTTEEEEEETTTTEEE
T ss_pred eCCCEEEEEECCCCCEE
Confidence 89999999999987543
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.06 E-value=4.5e-09 Score=91.52 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=82.9
Q ss_pred EEEEccccccceEEEEEeCCCCEEEE--EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC-
Q 009373 324 LTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG- 398 (536)
Q Consensus 324 ~~~~~~~~~~~i~~l~~~~~~~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~- 398 (536)
...+.....++|.+++|+|+|+.|++ |..++.|.+||++. ..+..+ +...++.+.|+| ++|++++.
T Consensus 51 ~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-------~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~ 121 (194)
T PF08662_consen 51 VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-------KKIFSF--GTQPRNTISWSPDGRFLVLAGFG 121 (194)
T ss_pred cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-------cEeEee--cCCCceEEEECCCCCEEEEEEcc
Confidence 34443335567999999999998654 44678999999963 345544 356788999997 68888774
Q ss_pred --CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecC------CCeEEEEeCCc
Q 009373 399 --DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFSQ 468 (536)
Q Consensus 399 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~i~vW~~~~ 468 (536)
.|.|.+||+++...... .........+++|+|++++++.. |..++||++..
T Consensus 122 n~~G~l~~wd~~~~~~i~~-------------------~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 122 NLNGDLEFWDVRKKKKIST-------------------FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCcEEEEEECCCCEEeec-------------------cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 46799999986433321 12223455677778888888764 78899999964
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.04 E-value=1.3e-06 Score=82.14 Aligned_cols=263 Identities=14% Similarity=0.080 Sum_probs=155.4
Q ss_pred CcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeC----------CCcEEEEEcccCccceecccCcccccceEEe
Q 009373 180 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT----------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 249 (536)
Q Consensus 180 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 249 (536)
++|.+.|..+++.+..+.....+-..+++|++.|+++.. +..|.+||..+.+. ...+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-------------~~~i 93 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-------------IADI 93 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-------------EeEE
Confidence 899999999999888875433333348999998888766 78999999988642 2222
Q ss_pred e---------CCccCEEEEEEeCCEEEEEe-c-CCeEEEEeCCCceEeEeeeccccEEEE-eecCCEEEEecCCcEEEEe
Q 009373 250 W---------EHEGPITSLALDLTRIYSGS-W-DMTVRVWDRALLKCLKVLRHSDWVYGL-APHDTTVASTSGSDVYIWD 317 (536)
Q Consensus 250 ~---------~h~~~v~~l~~~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~d~~i~i~d 317 (536)
. +.......+.-++++++... . +..|.+.|+.+++.+..+.-.+...-+ ..+....+.+.||......
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEE
Confidence 1 11122344444888888665 3 789999999999999988743322222 2334444445555544433
Q ss_pred CCC-CcEE-EEEccccc--cce-EEEEEeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeecc-------CCCCCeE
Q 009373 318 TNS-GCLL-TVVNGAHV--GNT-KSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-------PHTGPVN 384 (536)
Q Consensus 318 ~~~-~~~~-~~~~~~~~--~~i-~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~ 384 (536)
+.+ |+.. ....-.+. ..+ ..-.|.+ +|.++++..+ |.|.+.|+........ .....+. -..+.+.
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcce
Confidence 322 2211 11000011 000 0003455 8888888776 9999999755432111 1222111 1223334
Q ss_pred EEEEcC--CeEEEEe----------CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-E
Q 009373 385 SLAFEF--PWLVSAA----------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-R 451 (536)
Q Consensus 385 ~l~~~~--~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 451 (536)
-+++++ +.++... ..+.|.++|..+.+.... ..-++...-..++++++ +
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~------------------i~vG~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK------------------IELGHEIDSINVSQDAKPL 313 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE------------------EeCCCceeeEEECCCCCeE
Confidence 488874 5666532 125799999887533322 12244444455666667 6
Q ss_pred EEEec-CCCeEEEEeCCchhhHHHH
Q 009373 452 IVCGG-EEGIVRIWNFSQAFEIERR 475 (536)
Q Consensus 452 l~sg~-~Dg~i~vW~~~~~~~~~~~ 475 (536)
|++.. .++.|.+.|..+++.+.+.
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEeee
Confidence 65444 6889999999999887765
No 260
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=6.1e-08 Score=96.52 Aligned_cols=207 Identities=14% Similarity=0.114 Sum_probs=124.6
Q ss_pred CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEeeecccc
Q 009373 220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDW 294 (536)
Q Consensus 220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~ 294 (536)
..|.+||.... ....+..+...+.+.+| +++.|+..+.+ ..|.+||+.+++........+.
T Consensus 184 ~~l~i~D~~g~--------------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~ 249 (433)
T PRK04922 184 YALQVADSDGY--------------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI 249 (433)
T ss_pred EEEEEECCCCC--------------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC
Confidence 35888887433 23345566778888888 77888877643 4699999988776443333332
Q ss_pred E--EEEeecCCEEEEe-c-CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCc--EEEEEcccCc
Q 009373 295 V--YGLAPHDTTVAST-S-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDC 365 (536)
Q Consensus 295 v--~~~~~~~~~l~~~-~-d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~--i~iwd~~~~~ 365 (536)
. ..++|+|+.++.. + ++ .|++||+.+++... +. .+.......+|+|+|+.|+.++. +|. |+++|+.++.
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 2 3456899877543 3 43 59999999887543 32 34445567899999998877654 555 5555655542
Q ss_pred cccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC---cEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373 366 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG---KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC 440 (536)
Q Consensus 366 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (536)
...+..+.......+|+| ++|+..+.++ .|.+||+.++... . ...+...
T Consensus 328 -------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~------------------Lt~~~~~ 381 (433)
T PRK04922 328 -------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T------------------LTPGSLD 381 (433)
T ss_pred -------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E------------------CCCCCCC
Confidence 111112223344678875 6776655433 5999998764211 0 0111112
Q ss_pred cEEEEEecCCEEEEecC---CCeEEEEeCCc
Q 009373 441 NLLSVDIGADRIVCGGE---EGIVRIWNFSQ 468 (536)
Q Consensus 441 ~v~~~~~~~~~l~sg~~---Dg~i~vW~~~~ 468 (536)
.-.++++++++++..+. .+.|.++++..
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 22366777776655444 34577777754
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.7e-07 Score=93.40 Aligned_cols=214 Identities=14% Similarity=0.081 Sum_probs=129.6
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCceee--eeCCCCceEEEEecCCCEEEE-EeCCCc--EE
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYD-S--IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVA-GGTDGF--IH 223 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~d-g--~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s-g~~dg~--i~ 223 (536)
+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... .+.+.. .-..++|+|+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~-~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN-GAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc-CCeeECCCCCEEEEEEeCCCCeEEE
Confidence 4556667788899999999988876543 3 58889998876432 222222 23567899997764 566665 66
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC--eEEEEeCCCceEeEeeecccc--EE
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDW--VY 296 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~--v~ 296 (536)
++|+.++. ...+..+.......+| +++.++..+. ++ .|.++|+.+++.......... -.
T Consensus 290 ~~dl~tg~--------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~ 355 (448)
T PRK04792 290 VVDIATKA--------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG 355 (448)
T ss_pred EEECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence 77776542 2233344445566677 6777665543 33 466678877765432212111 23
Q ss_pred EEeecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCc--EEEEEcccCccccc
Q 009373 297 GLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDCTEAN 369 (536)
Q Consensus 297 ~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~--i~iwd~~~~~~~~~ 369 (536)
+++|+|+.++..+ ++ .|.++|+.+++... +.... ......|+|+|+.|+..+. +|. +.+++....
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~----- 427 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR----- 427 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-----
Confidence 5669999887765 33 46668888876533 32211 1224579999998776554 343 666665332
Q ss_pred cceeeeccCCCCCeEEEEEcC
Q 009373 370 VLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 370 ~~~~~~~~~h~~~v~~l~~~~ 390 (536)
....+..+.+.+...+|+|
T Consensus 428 --~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 --FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --ceEECcCCCCCcCCCccCC
Confidence 3333444555666677765
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.98 E-value=4.9e-06 Score=80.19 Aligned_cols=273 Identities=14% Similarity=0.167 Sum_probs=159.9
Q ss_pred EEEEeCC----CcEEEEEC--CCCce--eeee-CCCCceEEEEecCCCEEEEEeC----CCcEEEEEcccCccceecccC
Q 009373 173 LFTSGYD----SIVRMWHL--EDGFS--IASS-KPLGCTIRAVAADKKLLVAGGT----DGFIHCWRAVEVLPHLFDISG 239 (536)
Q Consensus 173 l~sgs~d----g~v~iwd~--~~~~~--~~~~-~~~~~~v~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~ 239 (536)
++.|++. +.|.+|++ ++++. +... ......-+++++++++|++... +|.|..|++....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-------- 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-------- 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT--------
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc--------
Confidence 4566666 68888887 44432 2222 3344455677899999999877 5789999876531
Q ss_pred cccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCC-ceEeEe---eec-----------cccEEEE--e
Q 009373 240 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LKCLKV---LRH-----------SDWVYGL--A 299 (536)
Q Consensus 240 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~-~~~~~~---~~~-----------~~~v~~~--~ 299 (536)
.....+............+++ ++++|+++. .+|+|.++++.. +..... +.+ .....++ .
T Consensus 74 -g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 74 -GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp -TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred -ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 011222233223344556777 677777776 589999999986 433322 211 1223344 4
Q ss_pred ecCCEEEEec--CCcEEEEeCCCCc--E--EEEEccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCc-cccccc
Q 009373 300 PHDTTVASTS--GSDVYIWDTNSGC--L--LTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDC-TEANVL 371 (536)
Q Consensus 300 ~~~~~l~~~~--d~~i~i~d~~~~~--~--~~~~~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~-~~~~~~ 371 (536)
|+++++++.. ...|.+|++.... . ...+........+.+.|+|+++++.+. -.++.|.+|++.... ......
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 8899888876 4679999997754 3 223333456678999999999987655 457889999998321 111111
Q ss_pred eeeeccC---CCCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE
Q 009373 372 LVATWIP---HTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV 445 (536)
Q Consensus 372 ~~~~~~~---h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 445 (536)
.+..+.. .......|+++| ++|+++. .++.|.+|++.... .....+... ...+....-+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--------g~l~~~~~~-----~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--------GTLTLVQTV-----PTGGKFPRHFAF 299 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--------TTEEEEEEE-----EESSSSEEEEEE
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--------CceEEEEEE-----eCCCCCccEEEE
Confidence 1222211 122577888875 6666655 56789999994310 011111100 012333445666
Q ss_pred EecCCEEE-EecCCCeEEEEeCC
Q 009373 446 DIGADRIV-CGGEEGIVRIWNFS 467 (536)
Q Consensus 446 ~~~~~~l~-sg~~Dg~i~vW~~~ 467 (536)
++++++|+ +...++.|.+|+++
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEe
Confidence 77888665 45578899999875
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.97 E-value=6.3e-08 Score=92.49 Aligned_cols=179 Identities=13% Similarity=0.235 Sum_probs=140.8
Q ss_pred CEEEEEecCCeEEEEeCCCceEeEeee----ccccEEE----Ee------------------ecCCEEEEec-CCcEEEE
Q 009373 264 TRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYG----LA------------------PHDTTVASTS-GSDVYIW 316 (536)
Q Consensus 264 ~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~----~~------------------~~~~~l~~~~-d~~i~i~ 316 (536)
.+++..+.||.+++||...++....+. ..+..++ +. .+...++-|. .|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 578899999999999999988877765 1121111 11 1233566666 7999999
Q ss_pred eCCCCcEEEEEc-cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCC--eE
Q 009373 317 DTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP--WL 393 (536)
Q Consensus 317 d~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l 393 (536)
++..|+....+. ..|.+.|.++.++.+-..|.+++.|+.+..|+.... ..+..+......+.+++.+|+ .+
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~------~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK------VIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc------eeeeeeccCCCccceEEEcCCCCEE
Confidence 999999988887 579999999999999899999999999999999888 678888888889999999886 77
Q ss_pred EEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec-------CC-EEEEecCCCeEEEEe
Q 009373 394 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-------AD-RIVCGGEEGIVRIWN 465 (536)
Q Consensus 394 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~-~l~sg~~Dg~i~vW~ 465 (536)
++++ +.|++||+++ .+....+.||...|.+++|. |. .|.+...+..+.+|-
T Consensus 160 ~~as--~~ik~~~~~~-------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIET-------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred Eecc--ceEEEEEccC-------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 7665 5799999998 44556788899888887763 23 455666677788888
Q ss_pred CCch
Q 009373 466 FSQA 469 (536)
Q Consensus 466 ~~~~ 469 (536)
+...
T Consensus 219 v~~~ 222 (541)
T KOG4547|consen 219 VEKE 222 (541)
T ss_pred EEcc
Confidence 7763
No 264
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=4.3e-07 Score=82.85 Aligned_cols=216 Identities=16% Similarity=0.144 Sum_probs=134.8
Q ss_pred CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEE-
Q 009373 219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY- 296 (536)
Q Consensus 219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~- 296 (536)
+|+|..||..+++.. -...+..-.....+... +++.+++++.++.+..||..+|+.+..+.....+.
T Consensus 2 ~g~l~~~d~~tG~~~-----------W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKEL-----------WSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG 70 (238)
T ss_dssp TSEEEEEETTTTEEE-----------EEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS
T ss_pred CCEEEEEECCCCCEE-----------EEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc
Confidence 577888888766411 01111111222332234 88889999999999999999999988877333221
Q ss_pred -EEeecCCEEEEecCCcEEEEeCCCCcEEEEE-cccc--ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373 297 -GLAPHDTTVASTSGSDVYIWDTNSGCLLTVV-NGAH--VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 372 (536)
Q Consensus 297 -~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~-~~~~--~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 372 (536)
.+..++..++...++.++.+|..+|+.+... .... ............++.++++..++.|..+|++++. .
T Consensus 71 ~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~------~ 144 (238)
T PF13360_consen 71 APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK------L 144 (238)
T ss_dssp GEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE------E
T ss_pred eeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc------E
Confidence 2335555555666889999999999998874 3211 0112222233347888888889999999999983 3
Q ss_pred eeeccCCCCC-----------eEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccccc
Q 009373 373 VATWIPHTGP-----------VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 441 (536)
Q Consensus 373 ~~~~~~h~~~-----------v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (536)
+......... ...+.+....++.++.++.+.-+|+.++...+... ...
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~---------------------~~~ 203 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP---------------------ISG 203 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC---------------------SS-
T ss_pred EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec---------------------CCC
Confidence 3333322211 13334444688888888864334998864332110 011
Q ss_pred EEE-EEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373 442 LLS-VDIGADRIVCGGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 442 v~~-~~~~~~~l~sg~~Dg~i~vW~~~~~~~~ 472 (536)
... ....++.|+.++.|+.|..||+.+|+.+
T Consensus 204 ~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 204 IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 222 5567778888879999999999998754
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.96 E-value=1.9e-06 Score=81.00 Aligned_cols=224 Identities=11% Similarity=0.035 Sum_probs=136.5
Q ss_pred EecCCCEEEEEeC----------CCcEEEEECCCCceeeeeCCCC---------ceEEEEecCCCEEEEEe-C-CCcEEE
Q 009373 166 VLASAKLLFTSGY----------DSIVRMWHLEDGFSIASSKPLG---------CTIRAVAADKKLLVAGG-T-DGFIHC 224 (536)
Q Consensus 166 ~~~~~~~l~sgs~----------dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~l~sg~-~-dg~i~v 224 (536)
++||++.|+.+.. +..|.+||+.+++.+..+.... ....++++||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998777655 7899999999999998875322 23678889999998776 3 689999
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCC-ceE-eEe--eecc-------c
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRAL-LKC-LKV--LRHS-------D 293 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~-~~~-~~~--~~~~-------~ 293 (536)
.|+.+++. +..+.- .+...-+......+.+.+.||......+.+ ++. ... +-+. .
T Consensus 133 vD~~~~kv-------------v~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~r 198 (352)
T TIGR02658 133 VDLEGKAF-------------VRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINH 198 (352)
T ss_pred EECCCCcE-------------EEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccC
Confidence 99987642 111111 111111111111122223333333322211 110 000 0011 1
Q ss_pred cEEEEe-ecCCEEEEecCCcEEEEeCCCC-----cEEEEEccc------cccceEEEEEeCCCCEEEEEc----------
Q 009373 294 WVYGLA-PHDTTVASTSGSDVYIWDTNSG-----CLLTVVNGA------HVGNTKSLARSHTGDFLFTGG---------- 351 (536)
Q Consensus 294 ~v~~~~-~~~~~l~~~~d~~i~i~d~~~~-----~~~~~~~~~------~~~~i~~l~~~~~~~~l~tg~---------- 351 (536)
+ .+. .+++.++.+..|+|.+.|+... +....+..+ ..+.+.-++++|+++.+++..
T Consensus 199 P--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 199 P--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred C--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 1 223 3788888888899999996443 333332111 233445599999999888743
Q ss_pred CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-eEEEEe-CCCcEEEEECCcccc
Q 009373 352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLR 412 (536)
Q Consensus 352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~ 412 (536)
..+.|.++|..+. +.+..+.. ...+..+++++ + +|++.. .++.|.++|..+.+.
T Consensus 277 ~~~~V~ViD~~t~------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 277 ASRFLFVVDAKTG------KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCEEEEEECCCC------eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 1247999999888 44444432 44788999986 4 666665 578899999988543
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=2.7e-08 Score=86.76 Aligned_cols=190 Identities=19% Similarity=0.201 Sum_probs=128.7
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 235 (536)
-.++.|++.+.-++++..+|.+.+-+...... ++..++|.-.+.... .+.+++++|+.||.+..||++-..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---- 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---- 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc----
Confidence 35778899899999999999998666554433 346778877665444 567899999999999999997332
Q ss_pred cccCcccccceEE-eeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCC-CceEeEeeeccccEEEEeec----CCEEE
Q 009373 236 DISGSEKQNTQFR-LWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVLRHSDWVYGLAPH----DTTVA 306 (536)
Q Consensus 236 ~~~~~~~~~~~~~-~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~----~~~l~ 306 (536)
..+.. ..-|...|.+|.- .+.++++|+.|-.|++||.+ -++++..-...+.|..+... ..+++
T Consensus 200 --------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 200 --------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred --------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHH
Confidence 12222 4468889999988 45699999999999999998 45566555566788887722 33455
Q ss_pred EecCCcEEEEeCCCCcE----EEEEccccccceEEEEEeCCCCEEEEEc-CCCcEE-EEEcc
Q 009373 307 STSGSDVYIWDTNSGCL----LTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIH-MYEII 362 (536)
Q Consensus 307 ~~~d~~i~i~d~~~~~~----~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~-iwd~~ 362 (536)
++--+..+|-+...+.. .......|.+-++.-.|......|+|++ .|..++ +|-.-
T Consensus 272 ~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred HHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 55555566666554421 2222235777777777755556788865 355544 55433
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6.8e-07 Score=84.82 Aligned_cols=306 Identities=13% Similarity=0.069 Sum_probs=185.6
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeC-----------CCcEEEEEcccC
Q 009373 162 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT-----------DGFIHCWRAVEV 230 (536)
Q Consensus 162 ~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~ 230 (536)
+-+.|||-|.||+|--.-| |.+|--++-..++.+.........++|..++|+|-+. ...+.|||+.+|
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 4577999999999987655 7899877777777777777888899999999998653 256999999998
Q ss_pred ccceecccCcccccceEEeeCCc--cCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEE
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHE--GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV 305 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l 305 (536)
... .....+.+.. -++..-++|+++++--.. .+|.||+..+...+-.-. ....|..++ |.+.+|
T Consensus 293 ~lk----------rsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 293 LLK----------RSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred chh----------cceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 521 1111111111 122222337777766555 678999877644332221 233444444 777777
Q ss_pred EEec---C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc----------CCCcEEEEEcccCccccc
Q 009373 306 ASTS---G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG----------EDGAIHMYEIINDCTEAN 369 (536)
Q Consensus 306 ~~~~---d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~ 369 (536)
+--. + ..+.+-.+.+++.+++..- +.-.=..+.|-.+|.+|+.-- .-..+.|+.++....
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nl-fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--- 437 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNL-FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--- 437 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccc-eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---
Confidence 7654 1 3477778888777776542 333333466777888876532 122366677666532
Q ss_pred cceeeeccCCCCCeEEEEEcC--CeEEEEeC---CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE
Q 009373 370 VLLVATWIPHTGPVNSLAFEF--PWLVSAAG---DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS 444 (536)
Q Consensus 370 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 444 (536)
++... .-...|...+|.| +.+++-+. ..++.+|.+++.... ......+.....+-..
T Consensus 438 --pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~---------------~~lVk~~dk~~~N~vf 499 (698)
T KOG2314|consen 438 --PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK---------------PSLVKELDKKFANTVF 499 (698)
T ss_pred --Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc---------------hhhhhhhcccccceEE
Confidence 22211 2356788889977 44443333 357889988752111 1111223333455567
Q ss_pred EEecCCEEEE---ecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373 445 VDIGADRIVC---GGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA 511 (536)
Q Consensus 445 ~~~~~~~l~s---g~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 511 (536)
++|.|++++. +|..|.+.++|.+-......-.. .+-.-..+.|.|.|+.+.+|+.--
T Consensus 500 wsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~----------eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 500 WSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP----------EHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred EcCCCcEEEEEEecccccceEEEecchhhhhhccCc----------cccccccceECCCCCEEEEeeehh
Confidence 7888886654 44578999999885221111000 112235799999999999986533
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.94 E-value=2e-07 Score=80.31 Aligned_cols=193 Identities=12% Similarity=0.047 Sum_probs=128.7
Q ss_pred EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEE---EEeCCEEEEEecCCeEEEEeCCC
Q 009373 206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSL---ALDLTRIYSGSWDMTVRVWDRAL 282 (536)
Q Consensus 206 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l---~~~~~~l~s~s~dg~i~iwd~~~ 282 (536)
+.-.-.+|+.|+..|...+|...+... .......|...|+-+ +-..-.+..++.|.++++.++.-
T Consensus 80 ~~~kc~~la~gG~~g~fd~~~~~tn~~------------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 80 FINKCVTLADGGASGQFDLFACNTNDG------------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred hhccccEEEeccccceeeeecccCccc------------ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 334456899999999999999876532 222222333333222 22334577788999999998865
Q ss_pred ceEeEeee-ccccEEE--EeecCCEEEEecC-CcEEEEeCCCC-c-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373 283 LKCLKVLR-HSDWVYG--LAPHDTTVASTSG-SDVYIWDTNSG-C-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356 (536)
Q Consensus 283 ~~~~~~~~-~~~~v~~--~~~~~~~l~~~~d-~~i~i~d~~~~-~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i 356 (536)
+....... ..-.+.+ ++++++++++.+| ..|..|.+... + .+..........-.+..|+.....+|++..||++
T Consensus 148 ~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~ 227 (344)
T KOG4532|consen 148 DSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC 227 (344)
T ss_pred CcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE
Confidence 43322222 1112444 4489999999885 77888887653 2 2232222344556678899999999999999999
Q ss_pred EEEEcccCccccccceeeeccCCCCCeEEEEEcC----CeEEEEeCCCcEEEEECCccc
Q 009373 357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 357 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~ 411 (536)
.|||++....+.. ....+-..|.+.+..+.|++ ++|+..-.-+.+.|-|+++..
T Consensus 228 ~I~DVR~~~tpm~-~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 228 AIYDVRNMATPMA-EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEEEecccccchh-hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 9999998753221 12233345899999999985 577777777899999999853
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.90 E-value=5.6e-07 Score=89.72 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=100.9
Q ss_pred EEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEeeeccccEE--EEeecCCEEEEe-c-C--CcEEE
Q 009373 247 FRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVAST-S-G--SDVYI 315 (536)
Q Consensus 247 ~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~-~-d--~~i~i 315 (536)
..+..+...+.+..| ++++|+.++.+ ..|++||+.+++......+...+. .++|+++.|+.. . + ..|++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 334456667888888 77888876644 479999999886554433333333 445888877643 3 3 35999
Q ss_pred EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CC--cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--
Q 009373 316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-- 390 (536)
Q Consensus 316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-- 390 (536)
||+.++...... .+........|+|+|+.|+..+. ++ .|+++|+.++. ...+..+...+....|+|
T Consensus 263 ~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 263 MDLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred EECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCC
Confidence 999887654332 24444556789999998876554 34 47777766552 223333455667778876
Q ss_pred CeEEEEeCCC---cEEEEECCc
Q 009373 391 PWLVSAAGDG---KLSLIDVRK 409 (536)
Q Consensus 391 ~~l~s~s~dg---~i~vwd~~~ 409 (536)
.+++.++.++ .|.+||+.+
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCC
Confidence 6777777765 788888876
No 270
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=5.8e-07 Score=89.25 Aligned_cols=156 Identities=21% Similarity=0.158 Sum_probs=96.2
Q ss_pred EeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEeeeccccE--EEEeecCCEEEE-ec-CCc--EEEE
Q 009373 248 RLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAS-TS-GSD--VYIW 316 (536)
Q Consensus 248 ~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~-~~-d~~--i~i~ 316 (536)
.+..+...+.+.+| +++.|+..+.+ ..|.+||+.+++........+.+ ..++|+++.++. .+ ++. |.++
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 34467778888888 77888776643 45999999988765433333333 345589988764 34 565 4445
Q ss_pred eCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeE
Q 009373 317 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL 393 (536)
Q Consensus 317 d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l 393 (536)
|+..+. ...+. .+........|+|||+.|+..+. +|...+|.+..... ....+ ++.+ ......+|+| ++|
T Consensus 270 d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~l-t~~g--~~~~~~~~SpDG~~I 342 (427)
T PRK02889 270 NADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRV-TFTG--SYNTSPRISPDGKLL 342 (427)
T ss_pred ECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEE-ecCC--CCcCceEECCCCCEE
Confidence 665554 34443 24455667889999998776554 56777776643211 11111 1222 2334567775 677
Q ss_pred EEEeCCC---cEEEEECCcc
Q 009373 394 VSAAGDG---KLSLIDVRKL 410 (536)
Q Consensus 394 ~s~s~dg---~i~vwd~~~~ 410 (536)
+..+.++ .|.+||+.++
T Consensus 343 a~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEEEccCCcEEEEEEECCCC
Confidence 7766554 6999998764
No 271
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=2.5e-06 Score=84.25 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=82.0
Q ss_pred EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeC----------CCcEEEEECCcccccC
Q 009373 346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAG----------DGKLSLIDVRKLLRSG 414 (536)
Q Consensus 346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~----------dg~i~vwd~~~~~~~~ 414 (536)
+++.|...|+|.++|+.++ .....+..|.+.|.++.|-+ ..|++.+. -+.+.|=|++++....
T Consensus 439 LvAvGT~sGTV~vvdvst~------~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~ 512 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTN------AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR 512 (1062)
T ss_pred eEEeecCCceEEEEEecch------hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc
Confidence 6889999999999999998 67778889999999999976 44555443 2456778888764332
Q ss_pred CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhh
Q 009373 415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALR 480 (536)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~ 480 (536)
..... .-.........++..++||+..-.|.-+.+||+.+-..+.....+++
T Consensus 513 fR~l~--------------~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P 564 (1062)
T KOG1912|consen 513 FRGLQ--------------KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALP 564 (1062)
T ss_pred cccCC--------------CCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCC
Confidence 11000 00112234455666788999999999999999988877776665555
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=4.2e-07 Score=88.68 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=130.8
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---------------eeeeeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---------------SIASSKPLGCTIRAVA--ADKKLLVAGGTDG 220 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg 220 (536)
.....|+.|+....++|.|+.||.++|-.+.+.. .-+++.+|...|.-+. .+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4557899999999999999999999999886532 1234678888876665 5567899999999
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEE--------EEeCC---------
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVR--------VWDRA--------- 281 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~--------iwd~~--------- 281 (536)
.|.||-+-.+... ....-....+.|.+++| +|..++....||.|. ||.-+
T Consensus 94 lIiVWmlykgsW~-----------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv 162 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWC-----------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV 162 (1189)
T ss_pred eEEEEeeecccHH-----------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccce
Confidence 9999988655310 11111123445666666 555555555555443 44211
Q ss_pred --------------CceEeE-----------------eee-----ccccEEEE----------eecCCEEEEec-CCcEE
Q 009373 282 --------------LLKCLK-----------------VLR-----HSDWVYGL----------APHDTTVASTS-GSDVY 314 (536)
Q Consensus 282 --------------~~~~~~-----------------~~~-----~~~~v~~~----------~~~~~~l~~~~-d~~i~ 314 (536)
.+++.. ... .+..+..+ .|+...++.+. +|.+.
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 011000 000 00001111 13455666666 57666
Q ss_pred EEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC---------cEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373 315 IWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---------AIHMYEIINDCTEANVLLVATWIPHTGPVNS 385 (536)
Q Consensus 315 i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 385 (536)
+-.-.+......+. ..-.+....|+++|..|++++.+. .|.+|..-. ..+.+++.....|++
T Consensus 243 iMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-------~i~gtlkvpg~~It~ 313 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-------HIVGTLKVPGSCITG 313 (1189)
T ss_pred hhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-------hheEEEecCCceeee
Confidence 65444333333332 335788899999999999988653 455555332 356777777888999
Q ss_pred EEEcC
Q 009373 386 LAFEF 390 (536)
Q Consensus 386 l~~~~ 390 (536)
++|.+
T Consensus 314 lsWEg 318 (1189)
T KOG2041|consen 314 LSWEG 318 (1189)
T ss_pred eEEcC
Confidence 99965
No 273
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=3.4e-08 Score=98.76 Aligned_cols=179 Identities=18% Similarity=0.271 Sum_probs=134.8
Q ss_pred eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEE
Q 009373 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLA 339 (536)
Q Consensus 262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 339 (536)
++..++.|+....+..+|+++.+..+... ..+.|.-+..+++++.+|. .|+|.+-|.++.+.+.++. .|.+.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee-ccccceeeee
Confidence 66778888888899999999998888777 4446888889999999999 7999999999999999996 6999998765
Q ss_pred EeCCCCEEEEEcC---------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEEC
Q 009373 340 RSHTGDFLFTGGE---------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 340 ~~~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~ 407 (536)
. .|+.|++++. |.-|+|||++.. +.+..+.-+.++ .-+.|.| ..+++++..|...+-|.
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm------ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM------RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhh------hccCCcccccCc-hhhhhcccccceEEEEecccceeeccc
Confidence 5 5899999886 445899999988 333333334433 4566776 68999999999999985
Q ss_pred CcccccCCCCCCCceeeEEeeCCCeeeec--cccccEEEEEecCCEEEEecCCCeEEEEe
Q 009373 408 RKLLRSGRPTSGKRVSRVIEVEPPQRMLH--GFECNLLSVDIGADRIVCGGEEGIVRIWN 465 (536)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~ 465 (536)
.+...+. ......+ +.....++++.+++.++-|..+|.|.+|.
T Consensus 296 ~~lsNP~---------------~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPP---------------AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCc---------------cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4432110 0011112 22234556667778999999999999998
No 274
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=7.6e-08 Score=82.52 Aligned_cols=243 Identities=19% Similarity=0.176 Sum_probs=139.5
Q ss_pred ceeeeeCccc-cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee------------eCC--CCceEEEEecCCCEEE
Q 009373 150 SIDVLYGHTE-AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS------------SKP--LGCTIRAVAADKKLLV 214 (536)
Q Consensus 150 ~~~~l~~h~~-~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~------------~~~--~~~~v~~~~~~~~~l~ 214 (536)
.+....+|.+ .|+.+.++. ...|+++..++.+.......+.+... +.. ...+..+++.-++.++
T Consensus 27 ~vD~i~~~~d~~~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~ 105 (319)
T KOG4714|consen 27 LVDEIMQHADVKLSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVC 105 (319)
T ss_pred chhhcccccceEEEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceE
Confidence 3444445544 245555553 44677777777776666554433221 111 1223334444567899
Q ss_pred EEeCCCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE--eCCEEEEEe-----cCCeEEEEeCCCceEe
Q 009373 215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGS-----WDMTVRVWDRALLKCL 286 (536)
Q Consensus 215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s-----~dg~i~iwd~~~~~~~ 286 (536)
++..||.+.+.+.+.... ...+.. .|.+. .+.++ .++.+.++. .-+..++|+++..+..
T Consensus 106 ~~~~dg~~~v~s~~~~~~------------~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 106 IGYADGSLAVFSTDKDLA------------LMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred ecCCCceEEEEechHHHh------------hhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccc
Confidence 999999999998754210 000000 11111 11111 333333322 1234455655433322
Q ss_pred Eeee-ccccEEEEe--ecCC-EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEE
Q 009373 287 KVLR-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 287 ~~~~-~~~~v~~~~--~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd 360 (536)
..-. ....|.+++ |..+ .+++|+ ||.+.+||.+.......+...|+.+++.+.|+| ++..|+++++||.+--||
T Consensus 173 ~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 173 IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 2111 333477776 5544 455555 799999999998666666568999999999999 467899999999999999
Q ss_pred cccCccc-----------------cc-cceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEE
Q 009373 361 IINDCTE-----------------AN-VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 406 (536)
Q Consensus 361 ~~~~~~~-----------------~~-~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 406 (536)
..+.... .. +.....+......|+++...+..|++|+.-+.|++++
T Consensus 253 as~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 253 ASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 7742110 00 0011111223345666666778999999989898875
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.82 E-value=7.2e-06 Score=89.64 Aligned_cols=245 Identities=10% Similarity=0.006 Sum_probs=143.6
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeeeCC--C--------------CceEEEEecCCCEEEEEe-CCCcEE
Q 009373 162 LTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKP--L--------------GCTIRAVAADKKLLVAGG-TDGFIH 223 (536)
Q Consensus 162 ~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~--------------~~~v~~~~~~~~~l~sg~-~dg~i~ 223 (536)
..+++++. ++++++-+.++.|++||.. +..+..+.+ . ...-+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35778764 6677888888999999976 444433322 0 112245556777666554 457799
Q ss_pred EEEcccCccceecccCcccccceEEeeC-------CccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeeec--
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWE-------HEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLRH-- 291 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-- 291 (536)
++|+.++....+.-.+.... ...+ .-..-..++++ +..+++.+.++.|++||..++........
T Consensus 650 ~id~~~~~V~tlag~G~~g~----~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGS----DYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred EEecCCCEEEEEeccCcccC----CCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 99987654222111100000 0000 01122467773 34566777889999999887654321110
Q ss_pred -------c------ccE--EEEeecCCEEEE-ec-CCcEEEEeCCCCcEEEEEc-----------cc---------cccc
Q 009373 292 -------S------DWV--YGLAPHDTTVAS-TS-GSDVYIWDTNSGCLLTVVN-----------GA---------HVGN 334 (536)
Q Consensus 292 -------~------~~v--~~~~~~~~~l~~-~~-d~~i~i~d~~~~~~~~~~~-----------~~---------~~~~ 334 (536)
. ... .++++++..+++ .. ++.|++||+.++....... .+ ....
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0 112 234477774444 44 6899999998765321110 00 1113
Q ss_pred eEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce-e------eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEE
Q 009373 335 TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL-V------ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLI 405 (536)
Q Consensus 335 i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~------~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vw 405 (536)
...++++++|.++++-+.++.|++||..++........ . ....+.-.....|++++ ..+++-+.++.|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 56899999999999999999999999877621100000 0 00112223567888864 677777889999999
Q ss_pred ECCccc
Q 009373 406 DVRKLL 411 (536)
Q Consensus 406 d~~~~~ 411 (536)
|+.+..
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 998753
No 276
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.81 E-value=2e-05 Score=75.95 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=147.5
Q ss_pred cccEEEEEEecCCCEEEEEeC----CCcEEEEECCCC--c--eeeee--CCCCceEEEEecCCCEEEEEe-CCCcEEEEE
Q 009373 158 TEAVLTVFVLASAKLLFTSGY----DSIVRMWHLEDG--F--SIASS--KPLGCTIRAVAADKKLLVAGG-TDGFIHCWR 226 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~----dg~v~iwd~~~~--~--~~~~~--~~~~~~v~~~~~~~~~l~sg~-~dg~i~vwd 226 (536)
......++++|++++|++... ++.|..|.+... . .+... .+....-.++.+++++|+++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344566789999999999877 578999988764 2 22222 233334466779999888886 489999999
Q ss_pred cccCccceecccCcccccceEEe--------eCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCce--Ee--Eeee-
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRL--------WEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLK--CL--KVLR- 290 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~~--~~--~~~~- 290 (536)
+........ ....... ........++.+ +++++++.. ....|.+|++.... .. ..+.
T Consensus 116 l~~~g~l~~-------~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 116 LDDDGSLGE-------VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp ECTTSEEEE-------EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred ccCCcccce-------eeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 976311000 0000000 012244667777 566776654 34579999987654 22 2222
Q ss_pred -ccccEEE--EeecCCEEEEec--CCcEEEEeCC--CCc--EEEEEcc---cc--ccceEEEEEeCCCCEEEEEc-CCCc
Q 009373 291 -HSDWVYG--LAPHDTTVASTS--GSDVYIWDTN--SGC--LLTVVNG---AH--VGNTKSLARSHTGDFLFTGG-EDGA 355 (536)
Q Consensus 291 -~~~~v~~--~~~~~~~l~~~~--d~~i~i~d~~--~~~--~~~~~~~---~~--~~~i~~l~~~~~~~~l~tg~-~dg~ 355 (536)
....... +.+++++++... +++|.+|++. ++. .+..+.. +. ......++++|+|++|.++. .++.
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 3333444 448888887766 6889999888 442 2222221 11 12578899999999887765 4678
Q ss_pred EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEEEEECC
Q 009373 356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR 408 (536)
Q Consensus 356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~ 408 (536)
|.+|++.... ..+..+..........+.++++| ++|+++. .++.|.+|++.
T Consensus 269 I~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 269 ISVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 9999994321 12233444443344578999965 7777776 56789999875
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=1.9e-08 Score=62.22 Aligned_cols=37 Identities=16% Similarity=0.460 Sum_probs=35.6
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 186 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd 186 (536)
.++++++|.+.|++|+|+|++.+|+||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5789999999999999999999999999999999997
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.80 E-value=1.1e-06 Score=82.62 Aligned_cols=296 Identities=14% Similarity=0.141 Sum_probs=182.1
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCC---------------
Q 009373 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG--------------- 220 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg--------------- 220 (536)
.-.-++..+++||.|.+|++.... -|.+|.-..+..+..+......-+.++|.+++|.+=+..+
T Consensus 30 ~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 30 SENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred ccCcchhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 356788899999999999987654 4899999888877777777777788899999999865543
Q ss_pred cEEEEEcccCccceecccCcccccceEEeeCCccC-----EEEEEEeCCEEEEEecCCeEEEEeCCCceEeE-eee--cc
Q 009373 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP-----ITSLALDLTRIYSGSWDMTVRVWDRALLKCLK-VLR--HS 292 (536)
Q Consensus 221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~--~~ 292 (536)
.+.+||+.++. .+..+.....+ +.....+..+++-. ....++|+++ ++.... .+. ..
T Consensus 109 ~~~vwd~~sg~-------------iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 109 NVFVWDIASGM-------------IVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred ceeEEeccCce-------------eEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence 48999998774 22333332222 44444466554433 2356889986 333221 111 12
Q ss_pred ccEEEEe--ec--CCEEEEe------cCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc-----------
Q 009373 293 DWVYGLA--PH--DTTVAST------SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG----------- 351 (536)
Q Consensus 293 ~~v~~~~--~~--~~~l~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~----------- 351 (536)
..+..++ |. +..|+.- ..+.+++|.+..+..+.+..- ....-..+.|.+.|++|+.--
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEEEeeeccccee
Confidence 3333333 33 2233332 246799999987776655421 222334678888888765421
Q ss_pred CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--Ce--EEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373 352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PW--LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 427 (536)
Q Consensus 352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~--l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 427 (536)
.+..+++++++... +.....-.++|....|+| +. +++|-.+-.+.++|++....-.
T Consensus 253 gesnLyl~~~~e~~-------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~------------- 312 (561)
T COG5354 253 GESNLYLLRITERS-------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFY------------- 312 (561)
T ss_pred ccceEEEEeecccc-------cceeccccccceeeeecccCCceeEEecccccceeecccccceEEe-------------
Confidence 13457888887442 222225578999999976 33 4445678899999998632111
Q ss_pred eCCCeeeeccccccEEEEEecCCEEEEecCC---CeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCc
Q 009373 428 VEPPQRMLHGFECNLLSVDIGADRIVCGGEE---GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT 504 (536)
Q Consensus 428 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D---g~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 504 (536)
+.........++++.++++.+|.| |.|-+|+......+.....+... .-.+|+|||..+
T Consensus 313 -------~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-----------s~~~wspd~qF~ 374 (561)
T COG5354 313 -------FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-----------SYCDWSPDGQFY 374 (561)
T ss_pred -------cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc-----------eEeeccCCceEE
Confidence 111112233455666777776654 56889988876655422222221 245789999887
Q ss_pred ce
Q 009373 505 DQ 506 (536)
Q Consensus 505 ~~ 506 (536)
.+
T Consensus 375 ~~ 376 (561)
T COG5354 375 DT 376 (561)
T ss_pred Ee
Confidence 76
No 279
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.79 E-value=6e-06 Score=83.35 Aligned_cols=277 Identities=13% Similarity=0.077 Sum_probs=162.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc------eEE--EEecCC-CEEEEEeCCCcEEEEEcccCccceecccCc
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC------TIR--AVAADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGS 240 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 240 (536)
+..++.++.++.|.-.|..+|+.+..+..... .+. .+...+ ..++.++.+|.|..+|.++++..-. .
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~-~--- 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWK-F--- 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeee-e---
Confidence 55677788899999999999988877644322 111 112223 7888899999999999988863211 0
Q ss_pred ccccceEEeeCC---ccCE-EEEEEeCCEEEEEe---------cCCeEEEEeCCCceEeEeeecc-c-------------
Q 009373 241 EKQNTQFRLWEH---EGPI-TSLALDLTRIYSGS---------WDMTVRVWDRALLKCLKVLRHS-D------------- 293 (536)
Q Consensus 241 ~~~~~~~~~~~h---~~~v-~~l~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~-~------------- 293 (536)
....+ ...+ .+..+.++.++.++ .+|.+..+|..+++.+..+... .
T Consensus 137 -------~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~ 209 (488)
T cd00216 137 -------GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQ 209 (488)
T ss_pred -------cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcc
Confidence 00011 0001 11223445565554 4688999999999988877521 1
Q ss_pred -------cE---EEEeecCCEEEEec-CC------------------cEEEEeCCCCcEEEEEcccccc-----ceEEEE
Q 009373 294 -------WV---YGLAPHDTTVASTS-GS------------------DVYIWDTNSGCLLTVVNGAHVG-----NTKSLA 339 (536)
Q Consensus 294 -------~v---~~~~~~~~~l~~~~-d~------------------~i~i~d~~~~~~~~~~~~~~~~-----~i~~l~ 339 (536)
.+ ..+.+.+..++.++ ++ .+.-+|..+|+..-.+...+.. ......
T Consensus 210 ~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~ 289 (488)
T cd00216 210 MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS 289 (488)
T ss_pred eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe
Confidence 01 12223345555554 44 6999999999998876532211 101111
Q ss_pred Ee----CCCC---EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEe---------------
Q 009373 340 RS----HTGD---FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA--------------- 397 (536)
Q Consensus 340 ~~----~~~~---~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s--------------- 397 (536)
+. -++. .+++++.+|.+...|..+++ .+-..... ...++.+++.++.++
T Consensus 290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~------~~W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~ 360 (488)
T cd00216 290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK------LISARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRC 360 (488)
T ss_pred EEeccccCCCeeEEEEEECCCceEEEEECCCCc------EeeEeEee---ccccccCCceEEEccccccccCcccccCCC
Confidence 11 1333 68888999999999999984 33221110 112233444444432
Q ss_pred ---CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHH
Q 009373 398 ---GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER 474 (536)
Q Consensus 398 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~ 474 (536)
.+|.|.-.|+.+++..++.......... . .+.......+...++.++.|+.||.|+.+|..+|+++.+
T Consensus 361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~--------~-~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSW--------N-IGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred CCCCceEEEEEeCCCCcEeeEeeCCcccccc--------c-cCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 4678888888887766654332110000 0 000011112344678899999999999999999988876
Q ss_pred H
Q 009373 475 R 475 (536)
Q Consensus 475 ~ 475 (536)
.
T Consensus 432 ~ 432 (488)
T cd00216 432 F 432 (488)
T ss_pred E
Confidence 4
No 280
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.79 E-value=1.4e-07 Score=94.49 Aligned_cols=180 Identities=14% Similarity=0.218 Sum_probs=136.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373 169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 248 (536)
Q Consensus 169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 248 (536)
++..++.|+.-..+..+|+.+.+..+...-....+.-+..+++.+.+|...|+|.+-|..+. ..+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~-------------~~iht 212 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF-------------ETIHT 212 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC-------------ceeee
Confidence 45567778877888889999888877776655557777789999999999999999998664 47888
Q ss_pred eeCCccCEEEEEEeCCEEEEEec---------CCeEEEEeCCCceEeEeee-ccc-cEEEEee--cCCEEEEecCCcEEE
Q 009373 249 LWEHEGPITSLALDLTRIYSGSW---------DMTVRVWDRALLKCLKVLR-HSD-WVYGLAP--HDTTVASTSGSDVYI 315 (536)
Q Consensus 249 ~~~h~~~v~~l~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~-~~~-~v~~~~~--~~~~l~~~~d~~i~i 315 (536)
+..|++.|.++...|+.|++++. |.-|+|||++..+.+..+. +.+ ....+.| ..+.+++...|...+
T Consensus 213 ~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 213 FDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred eeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceee
Confidence 99999999999999999999985 5568999999888777666 222 2222332 233444455899999
Q ss_pred EeCC---CCc-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373 316 WDTN---SGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII 362 (536)
Q Consensus 316 ~d~~---~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~ 362 (536)
-|.. ... -+..+ ......+.+++++++|+.++.|..+|.|.+|.-+
T Consensus 293 vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 9843 221 12222 2355569999999999999999999999999843
No 281
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.77 E-value=8.1e-09 Score=64.76 Aligned_cols=40 Identities=35% Similarity=0.514 Sum_probs=38.5
Q ss_pred CcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHH
Q 009373 67 LPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKE 106 (536)
Q Consensus 67 Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~ 106 (536)
||+|++.+||.+|++.++..+++|||+|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999974
No 282
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.77 E-value=5e-09 Score=68.20 Aligned_cols=45 Identities=38% Similarity=0.624 Sum_probs=39.4
Q ss_pred ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHH
Q 009373 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFY 108 (536)
Q Consensus 64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~ 108 (536)
+.+||+|++.+||+||++.++..+++||+.|++++.++.+|...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 678999999999999999999999999999999999999998743
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=1.1e-07 Score=86.69 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=99.1
Q ss_pred CCEEEEEecCCeEEEEeCCCce----EeEeee---ccccEEEEeecCCEEEEecC---CcEEEEeCCCCcEEEEEccccc
Q 009373 263 LTRIYSGSWDMTVRVWDRALLK----CLKVLR---HSDWVYGLAPHDTTVASTSG---SDVYIWDTNSGCLLTVVNGAHV 332 (536)
Q Consensus 263 ~~~l~s~s~dg~i~iwd~~~~~----~~~~~~---~~~~v~~~~~~~~~l~~~~d---~~i~i~d~~~~~~~~~~~~~~~ 332 (536)
+.+++.+..+....+++..... ...... ....+..+..+...+++-.- ..+.+|....+.....+ ||-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l--Ghv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL--GHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh--hhh
Confidence 3456666666665566554322 222222 22223333344444444333 44555555555555444 799
Q ss_pred cceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee-ccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcc
Q 009373 333 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 333 ~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~ 410 (536)
..++.++++||+++|+++..|..|+|-..... ..+.. ..||..-|..++.-+ ..|++||.|++|++||++++
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~------f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT------FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCcc------cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccC
Confidence 99999999999999999999999999887665 23333 347999999999976 56799999999999999998
Q ss_pred cccCCCC
Q 009373 411 LRSGRPT 417 (536)
Q Consensus 411 ~~~~~~~ 417 (536)
.......
T Consensus 226 k~L~t~d 232 (390)
T KOG3914|consen 226 KLLDTCD 232 (390)
T ss_pred Ccccccc
Confidence 7765443
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.74 E-value=2.8e-05 Score=72.79 Aligned_cols=172 Identities=13% Similarity=0.100 Sum_probs=119.6
Q ss_pred ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-cEEEEEcccCccccccceeeeccC
Q 009373 300 PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLVATWIP 378 (536)
Q Consensus 300 ~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 378 (536)
.+|.+++..+-|...+.+...+-.++. ++.+.|.-..+.-+++-++.|..|| .+-|||..++ .+..+..
T Consensus 330 ~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------e~kr~e~ 399 (668)
T COG4946 330 VNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------EVKRIEK 399 (668)
T ss_pred CCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-------eEEEeeC
Confidence 457777777777777777666554443 5777788888888888899999999 8999999887 3555667
Q ss_pred CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEE
Q 009373 379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVC 454 (536)
Q Consensus 379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s 454 (536)
.-+.|-++..++ .+++.+.....|-+.|+.++... ..-.....-++.+.++++ ++|-
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-------------------~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-------------------LIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-------------------EecccccceeEEEEEcCCceeEEE
Confidence 788999999976 67888888888999999875211 111222344566665554 7775
Q ss_pred ecCCC----eEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373 455 GGEEG----IVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA 511 (536)
Q Consensus 455 g~~Dg----~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 511 (536)
+--+| .|+++|+.+++....... .-...+-+|.|||+.+--.|..+
T Consensus 461 afP~gy~tq~Iklydm~~~Kiy~vTT~-----------ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGKIYDVTTP-----------TAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred ecCcceeeeeEEEEecCCCeEEEecCC-----------cccccCcccCCCCcEEEEEeccc
Confidence 55554 589999998765532211 12246778999999887654433
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=1.2e-07 Score=83.41 Aligned_cols=291 Identities=15% Similarity=0.144 Sum_probs=161.6
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009373 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL 231 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 231 (536)
..+.|+++.|...|.+|++|...|.|.+|.-+... ....+++|... +|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E----------------------FDY---- 78 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE----------------------FDY---- 78 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccc----------------------hhh----
Confidence 35679999999999999999999999999855332 11112222111 000
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEeee----------ccccEEE
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR----------HSDWVYG 297 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~v~~ 297 (536)
...+ .-...|..+.| ....++..+.|++|++|.+........-+ ..+++++
T Consensus 79 --------------LkSl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s 143 (460)
T COG5170 79 --------------LKSL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTS 143 (460)
T ss_pred --------------hhhc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCC
Confidence 0000 12345667777 22467788899999999986542211111 1222222
Q ss_pred Ee--------ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373 298 LA--------PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369 (536)
Q Consensus 298 ~~--------~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 369 (536)
.. .+..+++ + .+.+.+...|.-.|+++.++.|...++++ .|=.|.+|++.-....
T Consensus 144 ~~~l~lprls~hd~iia-a-------------~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s-- 206 (460)
T COG5170 144 TKELLLPRLSEHDEIIA-A-------------KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS-- 206 (460)
T ss_pred HHHhhcccccccceEEE-e-------------ccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCc--
Confidence 11 0111111 1 12223335688899999999998887775 5778999998654221
Q ss_pred cceeeeccCC-----CCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccccc
Q 009373 370 VLLVATWIPH-----TGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 441 (536)
Q Consensus 370 ~~~~~~~~~h-----~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (536)
..+...++| +..|++..|+| ..+.-.+..|.|++-|++....-... ...............+.+...+
T Consensus 207 -FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~---~klfe~~~D~v~~~ff~eivsS 282 (460)
T COG5170 207 -FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS---KKLFELTIDGVDVDFFEEIVSS 282 (460)
T ss_pred -eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc---hhhhhhccCcccchhHHHHhhh
Confidence 223334444 34788999988 67777888999999999842111000 0000000001111123333445
Q ss_pred EEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcc------cchhHHHhhhhccccccCCCCcceeEee
Q 009373 442 LLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGI------RLENRMRRRKLQTEMSSKGGRTDQCSVA 510 (536)
Q Consensus 442 v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 510 (536)
+..+.|++ +++++-+. -+|++||+...+..-.....+... .-+.-.--.+..+.||.|+..+.++++.
T Consensus 283 ISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 283 ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred hcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 55666554 46666654 589999998654321111100000 0111222345778999999998887653
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.72 E-value=1.7e-05 Score=86.72 Aligned_cols=263 Identities=9% Similarity=0.035 Sum_probs=138.6
Q ss_pred EEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeC
Q 009373 205 AVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDR 280 (536)
Q Consensus 205 ~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~ 280 (536)
++.+ ++.++++-+.++.|.++|............+......-..-..+-.....+++ +++.|+.+. ..+.|+++|.
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence 4444 45567777778889999875432111100000000000000011223467777 356555554 4578999998
Q ss_pred CCceEeEeeec-----------------cccE--EEEee-cCCEEEEec-CCcEEEEeCCCCcEEEEEcc-------c--
Q 009373 281 ALLKCLKVLRH-----------------SDWV--YGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNG-------A-- 330 (536)
Q Consensus 281 ~~~~~~~~~~~-----------------~~~v--~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-------~-- 330 (536)
.++........ -... .++.+ ++.++++.. ++.|++||..++........ +
T Consensus 654 ~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~ 733 (1057)
T PLN02919 654 VNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS 733 (1057)
T ss_pred CCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc
Confidence 77653221110 0011 23446 455555555 68899999988754321110 0
Q ss_pred ----cccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCcccccc-------ceeeeccC--------CCCCeEEEEEcC
Q 009373 331 ----HVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANV-------LLVATWIP--------HTGPVNSLAFEF 390 (536)
Q Consensus 331 ----~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~--------h~~~v~~l~~~~ 390 (536)
.......++++|+++ ++++-+.++.|++||+.++...... .....+.. .-....++++++
T Consensus 734 ~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~ 813 (1057)
T PLN02919 734 GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK 813 (1057)
T ss_pred cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence 112456799999998 5556667799999998865311000 00000100 111345788875
Q ss_pred --CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCc
Q 009373 391 --PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 391 --~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~ 468 (536)
..+++-+.++.|++||..+.........+..- ... ... ..-......-.+++.+++.+++-+.++.|++||+.+
T Consensus 814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G--~~d-G~~-~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG--FKD-GKA-LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC--CCC-Ccc-cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 57777778899999998764322111000000 000 000 000001122345666777889999999999999998
Q ss_pred hhh
Q 009373 469 AFE 471 (536)
Q Consensus 469 ~~~ 471 (536)
+..
T Consensus 890 ~~~ 892 (1057)
T PLN02919 890 GEA 892 (1057)
T ss_pred Ccc
Confidence 765
No 287
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=5.6e-05 Score=68.72 Aligned_cols=251 Identities=13% Similarity=0.113 Sum_probs=159.2
Q ss_pred CccceeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCC--Cceee----eeCCCCceEEEEecCCCEEEEEe
Q 009373 147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLED--GFSIA----SSKPLGCTIRAVAADKKLLVAGG 217 (536)
Q Consensus 147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~--~~~~~----~~~~~~~~v~~~~~~~~~l~sg~ 217 (536)
|......+-.+.+.++-|+|+|++++|+++-.+ |.|-.|.++. |+... ...++...-.++++++++++++.
T Consensus 28 g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An 107 (346)
T COG2706 28 GELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN 107 (346)
T ss_pred cccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE
Confidence 444455566778889999999999999988654 7788877764 43321 22344445567889999988887
Q ss_pred C-CCcEEEEEcccCccceecccCcccccceEEeeCCccC----------EEEEEE--eCCEEEEEec-CCeEEEEeCCCc
Q 009373 218 T-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP----------ITSLAL--DLTRIYSGSW-DMTVRVWDRALL 283 (536)
Q Consensus 218 ~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~--~~~~l~s~s~-dg~i~iwd~~~~ 283 (536)
. .|.|.++-+.+... .........|.+. +....+ ++++|++.+. --.|.+|++..+
T Consensus 108 Y~~g~v~v~p~~~dG~----------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 108 YHSGSVSVYPLQADGS----------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred ccCceEEEEEcccCCc----------cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 5 48899998865311 1122222233333 555556 6677777653 246889999876
Q ss_pred eEeEee----eccccEE--EEeecCCEEEEec--CCcEEEEeCCCC-c---EEEEE---ccc--cccceEEEEEeCCCCE
Q 009373 284 KCLKVL----RHSDWVY--GLAPHDTTVASTS--GSDVYIWDTNSG-C---LLTVV---NGA--HVGNTKSLARSHTGDF 346 (536)
Q Consensus 284 ~~~~~~----~~~~~v~--~~~~~~~~l~~~~--d~~i~i~d~~~~-~---~~~~~---~~~--~~~~i~~l~~~~~~~~ 346 (536)
+....- ....... .+.|++++..... +++|.+|..... . .++.+ +.. -.....++..+|+|++
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence 554322 2223333 3448999887777 799999988773 2 22222 111 2335678889999999
Q ss_pred EEEEcC-CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC-CcEEEEECCc
Q 009373 347 LFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD-GKLSLIDVRK 409 (536)
Q Consensus 347 l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d-g~i~vwd~~~ 409 (536)
|.++.. ...|-+|.+..... .+..+.....+....+...+++ ++|+++..+ ..|.+|.+..
T Consensus 258 LYasNRg~dsI~~f~V~~~~g--~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPDGG--KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEecCCCCeEEEEEEcCCCC--EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 988754 34688888766532 1233333344444466777754 788888775 4688887764
No 288
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=5.9e-06 Score=81.71 Aligned_cols=219 Identities=15% Similarity=0.080 Sum_probs=123.5
Q ss_pred eeeeCccccEEEEEEecCCCE---EEEEeCCC--cEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeC-CC---
Q 009373 152 DVLYGHTEAVLTVFVLASAKL---LFTSGYDS--IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGT-DG--- 220 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~---l~sgs~dg--~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~-dg--- 220 (536)
+.+......+.+-+|+|||+. +++...+| .|.+.++.+++... .+.+.. ..-.++|||+.|+..+. +|
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~-~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ-LMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc-cceEECCCCCEEEEEECCCCCcc
Confidence 345555666778899999974 23444444 57777888775433 333322 23578899988876553 23
Q ss_pred -cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEE--eCCC-ceEeEeee-cc
Q 009373 221 -FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVW--DRAL-LKCLKVLR-HS 292 (536)
Q Consensus 221 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iw--d~~~-~~~~~~~~-~~ 292 (536)
.+..|++..+. .........++.+.....+| ||+.|+..+ .+|...+| ++.. +.....+. ..
T Consensus 257 i~~~~~~~~~g~----------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~ 326 (428)
T PRK01029 257 LFIQSFSLETGA----------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY 326 (428)
T ss_pred eeEEEeecccCC----------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC
Confidence 33445654321 00111112122233445677 777777655 46655555 4432 22233333 22
Q ss_pred ccE--EEEeecCCEEEEec--C--CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC---CCcEEEEEccc
Q 009373 293 DWV--YGLAPHDTTVASTS--G--SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIIN 363 (536)
Q Consensus 293 ~~v--~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~---dg~i~iwd~~~ 363 (536)
..+ ..++|+|+.|+... + ..|.+||+.+++...... ....+....|+|+|+.|+..+. ...|.++|+..
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 232 34569999887665 2 369999999887654332 2345678899999998775433 34578888876
Q ss_pred CccccccceeeeccCCCCCeEEEEEcC
Q 009373 364 DCTEANVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
+. . ..+....+.+...+|+|
T Consensus 405 g~------~-~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 405 KK------T-RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred CC------E-EEeecCCCcccCceecC
Confidence 62 1 12222334455566665
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=3.3e-07 Score=83.64 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=103.7
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCce----eeeeC-CCCceEEEEecCCCEEEEEeCC---CcEEEEEcccCcc
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS----IASSK-PLGCTIRAVAADKKLLVAGGTD---GFIHCWRAVEVLP 232 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~----~~~~~-~~~~~v~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~ 232 (536)
+..+..++++++||.+..+....++++..... +.... +.......+..+......+..- ..+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc---
Confidence 44556778889999998888877777754432 11111 1111122222333333333333 4444444322
Q ss_pred ceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe-ecCCEEEE
Q 009373 233 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVAS 307 (536)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~ 307 (536)
.......||-+-++++++ |+.+++++..|..|++-.......+..+- |...|..++ .++..|++
T Consensus 142 -----------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS 210 (390)
T KOG3914|consen 142 -----------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLS 210 (390)
T ss_pred -----------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeee
Confidence 234456699999999999 88999999999999998877666666554 999999998 55666677
Q ss_pred ec-CCcEEEEeCCCCcEEEEE
Q 009373 308 TS-GSDVYIWDTNSGCLLTVV 327 (536)
Q Consensus 308 ~~-d~~i~i~d~~~~~~~~~~ 327 (536)
++ |+++++||+++|+.+.++
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cCCCCcEEEEecccCCccccc
Confidence 66 999999999999988766
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.68 E-value=8.5e-05 Score=79.89 Aligned_cols=305 Identities=14% Similarity=0.131 Sum_probs=178.3
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEE----ECCCCc--eeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcc-
Q 009373 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMW----HLEDGF--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV- 228 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iw----d~~~~~--~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~- 228 (536)
...+.|.++.+-++...++.+..+|.|.+. +..+.. .+.. -..+....+++||+..|+..+.+|++.+-+-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~-vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS-VDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE-EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 544432 2222 23345556777999999999999998776321
Q ss_pred ---c---------Cccce---------ecccCccccc-------c------eEEeeCCccCEEEEEE--eCCEEEEEec-
Q 009373 229 ---E---------VLPHL---------FDISGSEKQN-------T------QFRLWEHEGPITSLAL--DLTRIYSGSW- 271 (536)
Q Consensus 229 ---~---------~~~~~---------~~~~~~~~~~-------~------~~~~~~h~~~v~~l~~--~~~~l~s~s~- 271 (536)
. +.... ..+.++.... + ...+. +.+.-..|+| ||.++++.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 0 00000 0001111000 0 01122 3445668889 8889888764
Q ss_pred --C---CeEEEEeCCCceEeEeee---ccccEEEEeecCCEEEEec--C--CcEEEEeCCCCcEEEEEcc---ccccceE
Q 009373 272 --D---MTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS--G--SDVYIWDTNSGCLLTVVNG---AHVGNTK 336 (536)
Q Consensus 272 --d---g~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~---~~~~~i~ 336 (536)
. +.++||+-+ |....+-+ .-....+..|.|+++++.. . ..|.+|.- +|-....|.. .....|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence 2 579999976 55444333 1112233449999999887 2 34666653 4433333321 3456899
Q ss_pred EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc-CCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccc
Q 009373 337 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR 412 (536)
Q Consensus 337 ~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~ 412 (536)
.+.|++++..||.-..|. |.+|-..+.. +-.-+.+. .....+..+.|+| ..|...+.+|.+..+++.-...
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH----WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~ 383 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYH----WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS 383 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCE----EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence 999999999999977665 9999987762 11111222 2233455599986 5677777777776655432111
Q ss_pred --cCCCC-CCCceeeEE------------eeCCCeeee-ccccccEEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009373 413 --SGRPT-SGKRVSRVI------------EVEPPQRML-HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 413 --~~~~~-~~~~~~~~~------------~~~~~~~~~-~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~ 469 (536)
..... ....+..+. .+++|.... -....+|.+++++.+ .+++-..||.|.+|.....
T Consensus 384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 11111 111111111 112222111 122345666666554 6999999999999996654
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=7.6e-05 Score=67.88 Aligned_cols=266 Identities=11% Similarity=0.118 Sum_probs=156.5
Q ss_pred CCcEEEEECCCCce----eeee-CCCCceEEEEecCCCEEEEEeCC---CcEEEEEccc--CccceecccCcccccceEE
Q 009373 179 DSIVRMWHLEDGFS----IASS-KPLGCTIRAVAADKKLLVAGGTD---GFIHCWRAVE--VLPHLFDISGSEKQNTQFR 248 (536)
Q Consensus 179 dg~v~iwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~l~sg~~d---g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~ 248 (536)
+.-|.+|++++..- +... .....+-+.+.++++.|+++..+ |.|..|.+.. |... .+-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-----------~ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-----------FLNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-----------Eeec
Confidence 46799999874321 1111 22344567788999989888655 7777777654 2211 1111
Q ss_pred eeCCccCEEEEEE--eCCEEEEEec-CCeEEEEeCCC-ceEe---Eeeecccc----------EEE--EeecCCEEEEec
Q 009373 249 LWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRAL-LKCL---KVLRHSDW----------VYG--LAPHDTTVASTS 309 (536)
Q Consensus 249 ~~~h~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~~~-~~~~---~~~~~~~~----------v~~--~~~~~~~l~~~~ 309 (536)
......+-+.+++ ++++++++.. -|.|.++-++. |... ..+.|.+. +-. +.|+++++++..
T Consensus 84 ~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 1111223356666 6677777654 57899998865 3322 33334433 333 349999999988
Q ss_pred --CCcEEEEeCCCCcEEEEEc--cccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCc-cccccceeeeccC---CC
Q 009373 310 --GSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDC-TEANVLLVATWIP---HT 380 (536)
Q Consensus 310 --d~~i~i~d~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~-~~~~~~~~~~~~~---h~ 380 (536)
-..|.+|++..|+....-. -......+-|.|+|++++....++ +++|.+|...... ....+..+.++.. -.
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 4679999999876533211 124557889999999998766654 8999999998751 1111122222221 12
Q ss_pred CCeEEEEEc--CCeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecC
Q 009373 381 GPVNSLAFE--FPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE 457 (536)
Q Consensus 381 ~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~ 457 (536)
....+|..+ +++|+++.. ...|.++.+...... .. +. ......|....-+.+++++++|++++.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~--------L~-~~----~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK--------LE-LV----GITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE--------EE-EE----EEeccCCcCCccceeCCCCCEEEEEcc
Confidence 344455555 467777654 347888877642110 00 00 011124444566788888887666654
Q ss_pred -CCeEEEEeCCc
Q 009373 458 -EGIVRIWNFSQ 468 (536)
Q Consensus 458 -Dg~i~vW~~~~ 468 (536)
+..|.+|..+.
T Consensus 311 ~sd~i~vf~~d~ 322 (346)
T COG2706 311 KSDNITVFERDK 322 (346)
T ss_pred CCCcEEEEEEcC
Confidence 55688888764
No 292
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=9.6e-06 Score=81.05 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=95.9
Q ss_pred EEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEeeeccccE--EEEeecCCEEEEe-c-CC--cEEE
Q 009373 247 FRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAST-S-GS--DVYI 315 (536)
Q Consensus 247 ~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~-~-d~--~i~i 315 (536)
..+..+...+....| +++.|+..+.+ ..|.+||+.+++........+.+ ..++|+|+.++.. . ++ .|.+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 334456778888888 77888766543 36899999888664433322222 3556899887643 3 33 6888
Q ss_pred EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CC--cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--
Q 009373 316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-- 390 (536)
Q Consensus 316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-- 390 (536)
+|+.+++... +. .+........|+|+|+.|+..+. +| .|+++|+.++.. ..+ +..+ .......|+|
T Consensus 272 ~d~~~~~~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~l-t~~~--~~~~~~~~Spdg 342 (430)
T PRK00178 272 MDLASRQLSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERV-TFVG--NYNARPRLSADG 342 (430)
T ss_pred EECCCCCeEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEe-ecCC--CCccceEECCCC
Confidence 9999886543 32 34455667889999997766553 44 466667665521 111 1122 2223456765
Q ss_pred CeEEEEeC-CC--cEEEEECCcc
Q 009373 391 PWLVSAAG-DG--KLSLIDVRKL 410 (536)
Q Consensus 391 ~~l~s~s~-dg--~i~vwd~~~~ 410 (536)
+.|+..+. ++ .|.+||+.++
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CEEEEEEccCCceEEEEEECCCC
Confidence 56666554 33 5788888764
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=1.3e-07 Score=92.57 Aligned_cols=213 Identities=17% Similarity=0.183 Sum_probs=134.0
Q ss_pred eeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc-eeeeeC--CCCceEEEEecCCCEEEEEeCCCcEEEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGF-SIASSK--PLGCTIRAVAADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~~-~~~~~~--~~~~~v~~~~~~~~~l~sg~~dg~i~vwd 226 (536)
--.+.||+.+|+.+.|+|.. ..+++++.|..|..||+.+.. .+..+. ....+-+.+......+.+.+....|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 35788999999999999965 589999999999999998753 233322 12234445553333445556677899999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeE--eeeccccEEEEeec
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLK--VLRHSDWVYGLAPH 301 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~ 301 (536)
.+.+ ..+...+.+|...|..+.|+ ...+.+++.||+|+.||........ +.....+|..
T Consensus 187 ~r~g------------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~---- 250 (1081)
T KOG0309|consen 187 LRKG------------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR---- 250 (1081)
T ss_pred ccCC------------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee----
Confidence 9877 34677788899999999993 4678999999999999976432211 1111111110
Q ss_pred CCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373 302 DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381 (536)
Q Consensus 302 ~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 381 (536)
++++ .-+.-.++-+...++.+-.-.-+..-..|+..+.. .++.++.||..
T Consensus 251 ~r~~-------------------------Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~-----~pVh~F~GH~D 300 (1081)
T KOG0309|consen 251 GRYL-------------------------PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN-----TPVHTFVGHDD 300 (1081)
T ss_pred cccc-------------------------ccCceeEeccccCCeeeeeccccchhhhhccccCC-----cceeeecCcch
Confidence 0000 00011111111111111111112223344444442 67899999999
Q ss_pred CeEEEEEc------C------CeEEEEeCCCcEEEEECCc
Q 009373 382 PVNSLAFE------F------PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 382 ~v~~l~~~------~------~~l~s~s~dg~i~vwd~~~ 409 (536)
.|....|- + -.|+|-|.|..+++|-+.+
T Consensus 301 ~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 301 VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 99877772 1 2699999999999999865
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=84.27 Aligned_cols=135 Identities=12% Similarity=0.140 Sum_probs=103.8
Q ss_pred EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc-----eEe
Q 009373 214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-----KCL 286 (536)
Q Consensus 214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~-----~~~ 286 (536)
++.+.+..|-+-|++++.. ..+ ...+.|.++.| .++.++.|...|.|..+|++.. .+.
T Consensus 228 fs~G~sqqv~L~nvetg~~--------------qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ--------------QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred ecccccceeEEEEeecccc--------------ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 5566677788888887632 112 25677888888 5688999999999999999854 566
Q ss_pred EeeeccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcE---EEEEccccccceEE--EEEeCCCCEEEEEcCCCcEE
Q 009373 287 KVLRHSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVGNTKS--LARSHTGDFLFTGGEDGAIH 357 (536)
Q Consensus 287 ~~~~~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~i~~--l~~~~~~~~l~tg~~dg~i~ 357 (536)
..+-|...|+++. .++.+|++.+ +|+|.+||++.-++ +..+. ||...-.- +...+....+++++.|...+
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccceEEEccCeeEEE
Confidence 7777999999987 4677777777 99999999998776 77774 57553332 23455667889999999999
Q ss_pred EEEcccC
Q 009373 358 MYEIIND 364 (536)
Q Consensus 358 iwd~~~~ 364 (536)
||.++.+
T Consensus 372 iWsl~~g 378 (425)
T KOG2695|consen 372 IWSLDSG 378 (425)
T ss_pred EEecccC
Confidence 9999988
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=5.2e-08 Score=86.86 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=110.9
Q ss_pred ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373 300 PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379 (536)
Q Consensus 300 ~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 379 (536)
..+..+.+|.+..+-+-|+.+|..... ...+.|.++.|...+++++.|..+|.|..+|++....... .+... .-|
T Consensus 223 i~gyhfs~G~sqqv~L~nvetg~~qsf---~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~r-lyh 297 (425)
T KOG2695|consen 223 IMGYHFSVGLSQQVLLTNVETGHQQSF---QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQR-LYH 297 (425)
T ss_pred cceeeecccccceeEEEEeeccccccc---ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-cceEE-EEc
Confidence 344445566688888899888754332 2567788999999899999999999999999998743222 22222 248
Q ss_pred CCCeEEEE---EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccE----EEEEecCCEE
Q 009373 380 TGPVNSLA---FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL----LSVDIGADRI 452 (536)
Q Consensus 380 ~~~v~~l~---~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~l 452 (536)
.+.|+++. |+..+|++.+.+|+|++||.+..+... ......||.... ..+......+
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----------------~V~qYeGHvN~~a~l~~~v~~eeg~I 361 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----------------SVMQYEGHVNLSAYLPAHVKEEEGSI 361 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhccc----------------ceeeeecccccccccccccccccceE
Confidence 88888875 467899999999999999998643211 122234443322 2334445589
Q ss_pred EEecCCCeEEEEeCCchhhHHHH
Q 009373 453 VCGGEEGIVRIWNFSQAFEIERR 475 (536)
Q Consensus 453 ~sg~~Dg~i~vW~~~~~~~~~~~ 475 (536)
+++|.|...|||.+..|..+.+.
T Consensus 362 ~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred EEccCeeEEEEEecccCceeecc
Confidence 99999999999999998877654
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.63 E-value=7.9e-06 Score=70.76 Aligned_cols=191 Identities=10% Similarity=-0.001 Sum_probs=124.0
Q ss_pred eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe----ecCCEEEEecCCcEEEEeCCCCcEEEEEcccccc--
Q 009373 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVG-- 333 (536)
Q Consensus 262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~-- 333 (536)
.-.+|+.|+.-|...+|...+.+....+- +...|.-+. .....+.+..|.++++.++.-+...... |..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---HNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---ecccc
Confidence 44689999999999999998766544433 333333222 3344555555888888877655433333 322
Q ss_pred ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee-eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373 334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA-TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 410 (536)
...+++++++++++++.+....|..|.+...... .+. .....+..-.+..|+. ..+|++..||++.|||++..
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey----~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY----IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccce----eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 3789999999999999999999999999876421 111 2233344446677764 68999999999999999976
Q ss_pred cccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--C--CEEEEecCCCeEEEEeCCchhhHH
Q 009373 411 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--A--DRIVCGGEEGIVRIWNFSQAFEIE 473 (536)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~sg~~Dg~i~vW~~~~~~~~~ 473 (536)
..+...... .-..|.+.+....|+ + ++|.-.-.-+.+.+-|+.++...+
T Consensus 236 ~tpm~~~ss--------------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 236 ATPMAEISS--------------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred ccchhhhcc--------------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 433221111 112355555555555 2 255544456789999999876544
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.62 E-value=0.00015 Score=68.08 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=118.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCC-cEEEEEcccCccceecccCcccccceE
Q 009373 169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG-FIHCWRAVEVLPHLFDISGSEKQNTQF 247 (536)
Q Consensus 169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 247 (536)
+|++++..|. |.+.|.+...+-.++.-......-..+..+++-++.|..|| .+-|+|..++ ...
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------e~k 395 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------EVK 395 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------eEE
Confidence 4677777775 66777776666555543333333445556777899999999 8999998876 334
Q ss_pred EeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-C----CcEEEEe
Q 009373 248 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-G----SDVYIWD 317 (536)
Q Consensus 248 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d----~~i~i~d 317 (536)
.+.+.-+.|.++.. +|+.++.+.....+-+.|+.++.....-+ ..+-|+.+. +++++++-+- + ..|++||
T Consensus 396 r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 396 RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 45566788999988 77889988888899999999987654443 556677766 8888988876 4 3599999
Q ss_pred CCCCcEEEEEccccccceEEEEEeCCCCEEEEE
Q 009373 318 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 350 (536)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg 350 (536)
+..++...... ..+.=.+-+|.|++++|.--
T Consensus 476 m~~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 476 MDGGKIYDVTT--PTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred cCCCeEEEecC--CcccccCcccCCCCcEEEEE
Confidence 99988765542 33334466788999876543
No 298
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=1.9e-05 Score=78.81 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=90.8
Q ss_pred eeCCccCEEEEEE--eCCEEEEEecC-C--eEEEEeCCCceEeEeeeccc--cEEEEeecCCEEEEec--CC--cEEEEe
Q 009373 249 LWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTS--GS--DVYIWD 317 (536)
Q Consensus 249 ~~~h~~~v~~l~~--~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i~i~d 317 (536)
+..+...+.+..| |++.|+..+.+ + .|.+||+.+++......... .-..++|+++.++... ++ .|.++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 4455667888888 77777766543 3 58889998876533322222 2235569999776543 44 488889
Q ss_pred CCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCc--EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--Ce
Q 009373 318 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PW 392 (536)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~ 392 (536)
+.+++... +. .+........|+|+|+.|+..+. +|. |.++|+.++.. ..+ ++.++ .....+|+| ++
T Consensus 293 l~tg~~~~-lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~L-t~~g~--~~~~~~~SpDG~~ 363 (448)
T PRK04792 293 IATKALTR-IT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRL-TFEGE--QNLGGSITPDGRS 363 (448)
T ss_pred CCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEE-ecCCC--CCcCeeECCCCCE
Confidence 98876543 32 24455677899999998766553 444 55556655521 111 12222 233457765 56
Q ss_pred EEEEeC-CC--cEEEEECCcc
Q 009373 393 LVSAAG-DG--KLSLIDVRKL 410 (536)
Q Consensus 393 l~s~s~-dg--~i~vwd~~~~ 410 (536)
|+..+. ++ .|.++|+.++
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred EEEEEecCCceEEEEEECCCC
Confidence 655544 44 3555676653
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=2.5e-06 Score=84.24 Aligned_cols=232 Identities=12% Similarity=0.017 Sum_probs=154.4
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cC------------CCEEEEEeCCCcEE
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD------------KKLLVAGGTDGFIH 223 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~------------~~~l~sg~~dg~i~ 223 (536)
...-.++.|+|.| ++|-|+ ...|.+-|..+-+.+..+.-|...|..+. |. .-.|+++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3345678898755 566665 46788999999999999988888777654 21 12678888899999
Q ss_pred EEEcccCccceecccCcccccceEEeeCCccCEEEEEE-----eC-CEEEEEecCCeEEEEeCCCceEeEeeeccccE-E
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DL-TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV-Y 296 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v-~ 296 (536)
+||+..+. ....+..|.+++..++| +. +.|++-....++.+|+..+|+..........+ .
T Consensus 93 l~d~~~~s-------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 93 LVDFVLAS-------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred EEEehhhh-------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence 99987653 44556778899999999 23 56777788899999999999999888744444 3
Q ss_pred EEe---ecCC-EEEEecCCcEEEEeCCC-------CcEEEEEcccccc------------c-------------eEEEEE
Q 009373 297 GLA---PHDT-TVASTSGSDVYIWDTNS-------GCLLTVVNGAHVG------------N-------------TKSLAR 340 (536)
Q Consensus 297 ~~~---~~~~-~l~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~------------~-------------i~~l~~ 340 (536)
|+. .+.+ +.+.++.|.+.+-+.-. ++..+.- ..|.. . .-.++|
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~-sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT-SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe-cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 455 3333 44555577666655422 1222211 11211 0 112456
Q ss_pred eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE--cC--CeEEEEeCCCcEEEEECCccc
Q 009373 341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EF--PWLVSAAGDGKLSLIDVRKLL 411 (536)
Q Consensus 341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~dg~i~vwd~~~~~ 411 (536)
+|.-+.++-......+.++|+.-. .++....-..+.+.-+.+ +| +.|++.-.||.+.+|--+...
T Consensus 239 ~p~~rn~lfi~~prellv~dle~~------~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 239 SPHWRNILFITFPRELLVFDLEYE------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred ChhhhceEEEEeccceEEEcchhh------ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 776554444556777999999877 444444334444444555 33 689999999999999876543
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.2e-06 Score=86.97 Aligned_cols=150 Identities=19% Similarity=0.100 Sum_probs=115.4
Q ss_pred ccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcccc
Q 009373 253 EGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH 331 (536)
Q Consensus 253 ~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~ 331 (536)
...+.|.++.+..|+.|+.+|.|++++.... ....+.|... ...|.++++|+ ||+|.|..+-+.+...++. .
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f 111 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN-PKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--F 111 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc-cccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe--c
Confidence 4567777888999999999999999987533 2333334333 56799999999 8999999999988887764 6
Q ss_pred ccceEEEEEeCC-----CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEE
Q 009373 332 VGNTKSLARSHT-----GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 406 (536)
Q Consensus 332 ~~~i~~l~~~~~-----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 406 (536)
..++.+++++|+ .+.+++|+.-| +.++.-+--+.. ..+ .+....++|.++.|.+++++=++.+| |+|||
T Consensus 112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---~~v-~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---DSV-VLSEGEGPIHSIKWRGNLIAWANDDG-VKVYD 185 (846)
T ss_pred CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc---cce-eeecCccceEEEEecCcEEEEecCCC-cEEEe
Confidence 678999999997 46799999999 777764332111 112 45566889999999999999999887 89999
Q ss_pred CCcccccCC
Q 009373 407 VRKLLRSGR 415 (536)
Q Consensus 407 ~~~~~~~~~ 415 (536)
+.+......
T Consensus 186 ~~~~~~l~~ 194 (846)
T KOG2066|consen 186 TPTRQRLTN 194 (846)
T ss_pred ccccceeec
Confidence 988655543
No 301
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.4e-05 Score=74.77 Aligned_cols=225 Identities=12% Similarity=0.127 Sum_probs=140.8
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeeeCCCCceEEEEecC--CCEEEE-----EeCCCcEEEEEcccCccc
Q 009373 162 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPLGCTIRAVAAD--KKLLVA-----GGTDGFIHCWRAVEVLPH 233 (536)
Q Consensus 162 ~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s-----g~~dg~i~vwd~~~~~~~ 233 (536)
++..|++|..+.+ =-..+.|.+|++.+.+. ...+......-..++|. ...+++ ++.-+.|++|........
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 5778887765433 22346799999876432 33344444455566654 334444 455577999987522110
Q ss_pred eecccCcccccceEEeeCCccCEEEEEEe--C-CEEE--EEecC---------CeEEEEeCCCceEeEeeeccccEEEEe
Q 009373 234 LFDISGSEKQNTQFRLWEHEGPITSLALD--L-TRIY--SGSWD---------MTVRVWDRALLKCLKVLRHSDWVYGLA 299 (536)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~-~~l~--s~s~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~ 299 (536)
.......+. ...=..+.|+ + ..|+ +..-| .++++.++....+...+...++|.++.
T Consensus 208 --------~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 208 --------QPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred --------chhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 000011110 1112234442 1 1222 22223 478888888667777777899999998
Q ss_pred --ecCCEEEEec---CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC---CCcEEEEEcccCccccccc
Q 009373 300 --PHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVL 371 (536)
Q Consensus 300 --~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~ 371 (536)
++++-++++. -..+.|||++ +.++..+ ..++=+++-|+|.|++++.++- -|.|-|||+.+. +
T Consensus 278 W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~------K 347 (566)
T KOG2315|consen 278 WSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR------K 347 (566)
T ss_pred ECCCCCEEEEEEecccceEEEEcCC-CCEeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch------h
Confidence 6676666655 4889999987 4556655 4556678999999999888775 488999999887 5
Q ss_pred eeeeccCCCCCeEEEEEcC--CeEEEEeC------CCcEEEEECCc
Q 009373 372 LVATWIPHTGPVNSLAFEF--PWLVSAAG------DGKLSLIDVRK 409 (536)
Q Consensus 372 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~ 409 (536)
++..+..... +-..|+| .+++|+.. |+.++||+...
T Consensus 348 ~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 348 LIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred hccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 6666554443 3456765 68887765 78899999853
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.54 E-value=0.0004 Score=63.53 Aligned_cols=206 Identities=14% Similarity=0.028 Sum_probs=125.6
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcc
Q 009373 163 TVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE 241 (536)
Q Consensus 163 ~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 241 (536)
++.|.+ ++.++++--..+.|..|+..++.......+. ..-..+...+..++.+..++. .++|..++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~--------- 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKV--------- 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEE---------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCce-EEEecCCCcE---------
Confidence 567887 6777778778999999999887654422222 223334423455666665544 4558776531
Q ss_pred cccceEEee--C-CccCEEEEEE--eCCEEEEEecC--------CeEEEEeCCCceEeEeeeccccEEEE--eecCCEEE
Q 009373 242 KQNTQFRLW--E-HEGPITSLAL--DLTRIYSGSWD--------MTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVA 306 (536)
Q Consensus 242 ~~~~~~~~~--~-h~~~v~~l~~--~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~ 306 (536)
....... . .....+++++ +|+..++.... |.|..++.. ++.......-...+.+ +++++.|+
T Consensus 73 --~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 73 --TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp --EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred --EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchhee
Confidence 1222221 1 3456778888 55655554433 567777877 5554444433444444 48888776
Q ss_pred Eec--CCcEEEEeCCCCcE----EEEEcc--ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373 307 STS--GSDVYIWDTNSGCL----LTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 378 (536)
Q Consensus 307 ~~~--d~~i~i~d~~~~~~----~~~~~~--~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 378 (536)
.+. .+.|..|++..... ...+.. ...+..-.+++..+|++.++....+.|.++|.. + ..+..+..
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G------~~~~~i~~ 222 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G------KLLREIEL 222 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S------CEEEEEE-
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c------cEEEEEcC
Confidence 544 68899998863221 122211 122347789999999988888889999999987 5 34444444
Q ss_pred CCCCeEEEEEc
Q 009373 379 HTGPVNSLAFE 389 (536)
Q Consensus 379 h~~~v~~l~~~ 389 (536)
....+++++|.
T Consensus 223 p~~~~t~~~fg 233 (246)
T PF08450_consen 223 PVPRPTNCAFG 233 (246)
T ss_dssp SSSSEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 45588999994
No 303
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.6e-05 Score=75.81 Aligned_cols=239 Identities=14% Similarity=0.152 Sum_probs=136.5
Q ss_pred cEEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCceeeeeCCC-----CceEEEEecCCCEEEEEeCCCcEE
Q 009373 160 AVLTVFVLASAKLLFTSGY-----------DSIVRMWHLEDGFSIASSKPL-----GCTIRAVAADKKLLVAGGTDGFIH 223 (536)
Q Consensus 160 ~V~~v~~~~~~~~l~sgs~-----------dg~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~sg~~dg~i~ 223 (536)
.|.-+.|||+.+||+|-|. ...+.|||+.+|...+.+... .-++..++.|++++|--.. .+|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4778899999999999764 257999999999988887652 2356778899998887666 4677
Q ss_pred EEEcccCcc------ce-----ecccC-----------cccccceEEe------------eCCccCEEEEEE--eCCEEE
Q 009373 224 CWRAVEVLP------HL-----FDISG-----------SEKQNTQFRL------------WEHEGPITSLAL--DLTRIY 267 (536)
Q Consensus 224 vwd~~~~~~------~~-----~~~~~-----------~~~~~~~~~~------------~~h~~~v~~l~~--~~~~l~ 267 (536)
||+...-.. .+ |.... .........+ .-|.-.=..+.| +|++|+
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 887643110 00 00000 0000000000 001111112333 455554
Q ss_pred EEe----------cCCeEEEEeCCCce-EeEeeeccccEEEEe--ecCCEEEEec----CCcEEEEeCCC-C---cEEEE
Q 009373 268 SGS----------WDMTVRVWDRALLK-CLKVLRHSDWVYGLA--PHDTTVASTS----GSDVYIWDTNS-G---CLLTV 326 (536)
Q Consensus 268 s~s----------~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~--~~~~~l~~~~----d~~i~i~d~~~-~---~~~~~ 326 (536)
.-- .-..+-|+.++... ++..+.....|..++ |.|..+++-+ ..++.+|-+++ . +.+..
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 321 11123334333222 122233556666666 7787666544 36799998874 2 23333
Q ss_pred EccccccceEEEEEeCCCCEEEEEc---CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC--
Q 009373 327 VNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD-- 399 (536)
Q Consensus 327 ~~~~~~~~i~~l~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d-- 399 (536)
+ .....+.+.|+|.|++++.+. ..|.+.++|+... ....+-.......+.+.|+| .|+++++.-
T Consensus 490 ~---dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a------~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 490 L---DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA------DLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred h---cccccceEEEcCCCcEEEEEEecccccceEEEecchh------hhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 3 235677899999999988764 5788999998753 11111122233557788987 788888763
Q ss_pred ----CcEEEEECC
Q 009373 400 ----GKLSLIDVR 408 (536)
Q Consensus 400 ----g~i~vwd~~ 408 (536)
.--++|++.
T Consensus 561 hk~d~GYri~tfq 573 (698)
T KOG2314|consen 561 HKVDNGYRIFTFQ 573 (698)
T ss_pred hccccceEEEEee
Confidence 334556554
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=3.9e-06 Score=83.49 Aligned_cols=182 Identities=14% Similarity=0.117 Sum_probs=129.6
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 237 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 237 (536)
.+.++|++++ +++|+-|+.+|.|++.+....- .+...|... ..+|.++++|+.||+|.|-.+-+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~------ 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD------ 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc----ccCCceEEEecCCCcEEEeeccCCc------
Confidence 4677888886 7899999999999999976432 222223222 5679999999999999998876542
Q ss_pred cCcccccceEEeeCCccCEEEEEEeC-------CEEEEEecCCeEEEEeCCC---ceEeEeeeccccEEEEeecCCEEEE
Q 009373 238 SGSEKQNTQFRLWEHEGPITSLALDL-------TRIYSGSWDMTVRVWDRAL---LKCLKVLRHSDWVYGLAPHDTTVAS 307 (536)
Q Consensus 238 ~~~~~~~~~~~~~~h~~~v~~l~~~~-------~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~v~~~~~~~~~l~~ 307 (536)
.. .......++.++++++ +.+++|+.-| +.++.-+- ...+..-...++|.++.+.|++++-
T Consensus 105 -------~~-~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAW 175 (846)
T KOG2066|consen 105 -------EI-TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAW 175 (846)
T ss_pred -------cc-eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEE
Confidence 11 1123456788888855 4689999888 77775431 1222112267899999999999999
Q ss_pred ecCCcEEEEeCCCCcEEEEEcccccc-----ceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 308 TSGSDVYIWDTNSGCLLTVVNGAHVG-----NTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 308 ~~d~~i~i~d~~~~~~~~~~~~~~~~-----~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
++|-.|++||+.+++.+..+...+.. -...+.|.++ ..|+.|-.| +|+|..++.+
T Consensus 176 and~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 176 ANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIKKR 235 (846)
T ss_pred ecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEecc
Confidence 99999999999999988887654422 1234667654 456666544 6999998833
No 305
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=6.4e-05 Score=73.97 Aligned_cols=188 Identities=12% Similarity=0.008 Sum_probs=113.6
Q ss_pred cEEEEEEecCCCE-EEEEeCC---CcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEEE-EeCC--CcEEEEEcccCc
Q 009373 160 AVLTVFVLASAKL-LFTSGYD---SIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVA-GGTD--GFIHCWRAVEVL 231 (536)
Q Consensus 160 ~V~~v~~~~~~~~-l~sgs~d---g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s-g~~d--g~i~vwd~~~~~ 231 (536)
.+..-.|+|||+. ++..+.+ ..|.++|+.+++...-.... ......++|||+.++. .+.+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 7788999999984 6544443 56899999888655433322 2234568899986654 3334 457777765542
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC--eEEEEeCCCceEeEeeeccccEEEEeecCCEEE
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA 306 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~ 306 (536)
...+..+.+......| ||+.|+..+. .+ .|.+.|+.+++.............++|+|+.++
T Consensus 269 --------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia 334 (419)
T PRK04043 269 --------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIV 334 (419)
T ss_pred --------------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEE
Confidence 2223233322223356 7777666553 23 678888887776443332222346779999887
Q ss_pred Eec-C---------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-Cc--EEEEEcccC
Q 009373 307 STS-G---------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-GA--IHMYEIIND 364 (536)
Q Consensus 307 ~~~-d---------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-g~--i~iwd~~~~ 364 (536)
... . ..|.+.|+.++... .+..+ .......|+|||+.|+..+.+ +. +.+.++...
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 665 2 25888899888653 33221 223357899999977665543 33 555555443
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.49 E-value=4.4e-07 Score=55.99 Aligned_cols=38 Identities=29% Similarity=0.551 Sum_probs=34.6
Q ss_pred cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373 322 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 322 ~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd 360 (536)
+++..+. +|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4566775 7999999999999999999999999999997
No 307
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=0.0002 Score=62.15 Aligned_cols=272 Identities=14% Similarity=0.112 Sum_probs=133.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCC-CceEEEE-ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAV-AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 247 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 247 (536)
|++++.|.+.|.+++-+.++|.....+... ...+.+. .+++..+..|+.|++.+..|..+.. .+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-------------cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-------------CVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-------------eEE
Confidence 778999999999999999999777766443 2344443 4899999999999999999986642 333
Q ss_pred EeeCCccCEEE--EEEeCCEEEEEecCCeEEEEeCCCc--eEeEeeeccccEEEE-eecCCEE-EEecCCcEEEEeCCCC
Q 009373 248 RLWEHEGPITS--LALDLTRIYSGSWDMTVRVWDRALL--KCLKVLRHSDWVYGL-APHDTTV-ASTSGSDVYIWDTNSG 321 (536)
Q Consensus 248 ~~~~h~~~v~~--l~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~-~~~~~~l-~~~~d~~i~i~d~~~~ 321 (536)
..+...+...+ ++.-+..|+.+...|.|.--..++. ..+.......++.+- ..-+..+ .++-||.+.-+| ..|
T Consensus 130 kskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG 208 (354)
T KOG4649|consen 130 KSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESG 208 (354)
T ss_pred ecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCC
Confidence 32221111111 2222344555555565554444433 222222223333321 1112222 233366666666 555
Q ss_pred cEEEEEccccccceEEE-EE-eCCCCEEEEEcCCCc--------EEEEEcccCccccc-cceeeeccCCCCCeEEEEEcC
Q 009373 322 CLLTVVNGAHVGNTKSL-AR-SHTGDFLFTGGEDGA--------IHMYEIINDCTEAN-VLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 322 ~~~~~~~~~~~~~i~~l-~~-~~~~~~l~tg~~dg~--------i~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~ 390 (536)
+++.++. ..++|..- +- .|..+.+..+.++.. --+|....+..... ..+-..+..|.-.+. .+
T Consensus 209 ~qvwr~~--t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S----~~ 282 (354)
T KOG4649|consen 209 RQVWRPA--TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGIS----YP 282 (354)
T ss_pred cEEEeec--CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCc----ch
Confidence 5555442 33333210 11 133344444443332 23444444310000 000000111111110 04
Q ss_pred CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373 391 PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 391 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~ 469 (536)
.+|..++.||++.|--.+...... ...+..+..+...+-...++ +.++. -+.+|+.|+.|..|+-||+.+.
T Consensus 283 ~ll~~~s~dgkv~il~~~~sl~~~-~s~~g~lq~~~~~el~~eIF---sSPvi----i~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 283 KLLRRSSGDGKVMILMTSKSLAEI-SSNGGELQNLEAIELSNEIF---SSPVI----IDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hhhhhhcCCCcEEEEEeccccccc-ccCCCccceEEEeecCcccc---cCCeE----EccEEEEEEccCeEEEEecccc
Confidence 678888999999887655432111 11222222222111111111 11111 1246888999999999999864
No 308
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=4.3e-05 Score=75.26 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=104.3
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC--CCCc-eEEEEecCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--PLGC-TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~-~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 235 (536)
..|.--+++..+.+++.|+.-|.+.+|+-..++....-. .+.. .+.+++++..++|.|+..|.|.++-+....+.-
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~- 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD- 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc-
Confidence 334444456678999999999999999988776554333 2333 334566888899999999999999876543211
Q ss_pred cccCcccccceEE-eeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc-----eEeEeeeccccEEEEeecCCEEEE
Q 009373 236 DISGSEKQNTQFR-LWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-----KCLKVLRHSDWVYGLAPHDTTVAS 307 (536)
Q Consensus 236 ~~~~~~~~~~~~~-~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~ 307 (536)
...... -..|...|++++| ++..+++|...|+|..-.+.+. .....+.....|..+..-..++..
T Consensus 113 -------~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLV 185 (726)
T KOG3621|consen 113 -------LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLV 185 (726)
T ss_pred -------ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehH
Confidence 111111 1137889999999 7889999999999999888762 111222366778788855555555
Q ss_pred ecCCcEEEEeCCCCc
Q 009373 308 TSGSDVYIWDTNSGC 322 (536)
Q Consensus 308 ~~d~~i~i~d~~~~~ 322 (536)
++-....+++++.+.
T Consensus 186 Stl~r~~Lc~tE~et 200 (726)
T KOG3621|consen 186 STLTRCILCQTEAET 200 (726)
T ss_pred hhhhhhheeecchhH
Confidence 554445566665543
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=6e-06 Score=80.93 Aligned_cols=204 Identities=9% Similarity=0.132 Sum_probs=130.6
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCccceec--ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEe
Q 009373 204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD--ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD 279 (536)
Q Consensus 204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd 279 (536)
..+..+..+++.|+.||.++|..+.+....... +........-.++.||.+.|.-+.| +...|-+...+|.|.+|-
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 344467789999999999999998775432211 1122333445678899999999999 446788899999999998
Q ss_pred CCCceEeEeee---ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC
Q 009373 280 RALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 353 (536)
Q Consensus 280 ~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d 353 (536)
+-.+.-..... ..+.|.+++ .+|..+.... ||.|.+=.+..++....-. .......+.|++|.+.++.+-.+
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHHHHhhhcC
Confidence 76654332221 445566666 5666666666 7777666555443221110 11223467899999988888899
Q ss_pred CcEEEEEcccCcccc-ccce----eeeccCCCCCeEEEEEc--------C--CeEEEEeCCCcEEEEECCc
Q 009373 354 GAIHMYEIINDCTEA-NVLL----VATWIPHTGPVNSLAFE--------F--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 354 g~i~iwd~~~~~~~~-~~~~----~~~~~~h~~~v~~l~~~--------~--~~l~s~s~dg~i~vwd~~~ 409 (536)
|.+.+||....-... ...+ ...+......|..+.|. | ..|+.+-.+|.+.+-.-.+
T Consensus 178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 999999976542110 0011 11122222346666662 1 5889999999888765443
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.8e-05 Score=72.58 Aligned_cols=237 Identities=12% Similarity=0.167 Sum_probs=138.8
Q ss_pred eeeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR 226 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd 226 (536)
.+.+.+|...|..++|+|..+ ++..++.+..|+|.|+++..++..+..+ ..+++++ .+.++|+.|..+|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 457778899999999999877 8889999999999999999888888776 4555444 3467899999999999999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--------eCCEEEEEecCCeEEEEeCC----CceEeEeeecccc
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--------DLTRIYSGSWDMTVRVWDRA----LLKCLKVLRHSDW 294 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~ 294 (536)
++.....+..+...- ...+|..++. .+..++..+.+ ...|++. ...++..++..+.
T Consensus 265 ~R~~~~~~~e~~a~~----------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 265 MRQPEGPLMELVANV----------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred ccCCCchHhhhhhhh----------ccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence 987643222221111 2234444443 23334333332 3455442 2223333334555
Q ss_pred EEEEeec--CCEEEEec--CC---cEE----EEeCCCCcEEEEEcccccc-ce------EEEEEeCCCCEE-EEEcCCCc
Q 009373 295 VYGLAPH--DTTVASTS--GS---DVY----IWDTNSGCLLTVVNGAHVG-NT------KSLARSHTGDFL-FTGGEDGA 355 (536)
Q Consensus 295 v~~~~~~--~~~l~~~~--d~---~i~----i~d~~~~~~~~~~~~~~~~-~i------~~l~~~~~~~~l-~tg~~dg~ 355 (536)
+.+++.+ .+.++... +. +++ --|-.+|.++.....++.+ .- .++.-.++.+++ .+|+..+.
T Consensus 333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~ 412 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE 412 (463)
T ss_pred eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence 6666532 23333332 21 111 1233445544443333321 11 111112344444 45556678
Q ss_pred EEEEEcccCccccccceeeeccCCCCCeEEEEEc---C-CeEEEEeCCCcEEEEECC
Q 009373 356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---F-PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~-~~l~s~s~dg~i~vwd~~ 408 (536)
+.+||+.+. ..++++.- ..+|..+... + .+|++-. |..++||..+
T Consensus 413 lil~D~~s~------evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 413 LILQDPHSF------EVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eEEeccchh------heeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 999999988 55555543 3788877763 2 4666554 4568887654
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.3e-06 Score=79.23 Aligned_cols=265 Identities=14% Similarity=0.134 Sum_probs=168.6
Q ss_pred CCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC
Q 009373 198 PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM 273 (536)
Q Consensus 198 ~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg 273 (536)
-|...|..+. ...+++++++.||.++.|.-..- .....+..+..|.+.|.+++. ++-.+.|.+. |.
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~i----------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRI----------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDH 76 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCc----------cceeehhhhHHHHHHHHhhhccccceeEeeccCccc
Confidence 3556666555 45679999999999999964221 112234445567788887776 7778888777 99
Q ss_pred eEEEEeCCCceEeEeee---ccccEEEEeecC---CEEEEec--CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC
Q 009373 274 TVRVWDRALLKCLKVLR---HSDWVYGLAPHD---TTVASTS--GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG 344 (536)
Q Consensus 274 ~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~---~~l~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~ 344 (536)
.++++|+.+...+..+. .++.+..+...| ..++++. ++.+.++|-.... +...+..-|..+|..+.+.+.+
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 99999998776654444 455555555333 2344444 6899999987654 4445555699999999999999
Q ss_pred CEEEEEcCCCcEEEEEcccCcccc------cc---ceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccccc
Q 009373 345 DFLFTGGEDGAIHMYEIINDCTEA------NV---LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS 413 (536)
Q Consensus 345 ~~l~tg~~dg~i~iwd~~~~~~~~------~~---~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~ 413 (536)
..+++....|.|.-|.....-..+ ++ .-+..+.-......++.|+| ..+.+-+.|..|++++++++...
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 999999999999999977311000 00 11122223455678888876 68888889999999999886544
Q ss_pred CCCCCCCcee--------eEE--eeC---CCeeeecccc---ccEEEEEecCCEEEEecCCCeEEEEeCCchhhHH
Q 009373 414 GRPTSGKRVS--------RVI--EVE---PPQRMLHGFE---CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE 473 (536)
Q Consensus 414 ~~~~~~~~~~--------~~~--~~~---~~~~~~~~~~---~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~ 473 (536)
.......... .+. ++. ...+.+..|. ..-..++-++++|+-|+-=| |++.++.++..++
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 3221110000 000 000 0001111122 22334556677888777666 8888888876544
No 312
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=8.4e-05 Score=73.62 Aligned_cols=198 Identities=12% Similarity=0.005 Sum_probs=108.0
Q ss_pred CCccCEEEEEE--eCCE--E-EEEecCC--eEEEEeCCCceEeEeeeccc--cEEEEeecCCEEEEecC--C--cE--EE
Q 009373 251 EHEGPITSLAL--DLTR--I-YSGSWDM--TVRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTSG--S--DV--YI 315 (536)
Q Consensus 251 ~h~~~v~~l~~--~~~~--l-~s~s~dg--~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~d--~--~i--~i 315 (536)
.....+.+-.| ||+. + ++...+| .|.+.++.+++........+ ....++|+|+.|+...+ | .+ ..
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 34445556677 5544 2 2444443 57777888776544433222 23356699988876652 3 33 44
Q ss_pred EeCCCC--cEEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--
Q 009373 316 WDTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-- 390 (536)
Q Consensus 316 ~d~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-- 390 (536)
|++..+ .....+..+..+.....+|+|||+.|+..+ .+|...+|.+...... .....+..+...+....|+|
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---QSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---cceEEeccCCCCccceeECCCC
Confidence 677653 122233222333446789999999777655 4676666654321000 11233334445667788986
Q ss_pred CeEEEEeCC---CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCCEEE-Eec--CCCeEEE
Q 009373 391 PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIV-CGG--EEGIVRI 463 (536)
Q Consensus 391 ~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~-sg~--~Dg~i~v 463 (536)
+.|+..+.+ ..|.+||+.++.... ...+ .......++++++.|+ ++. ..+.|++
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-------------------Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-------------------LTTSPENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-------------------ccCCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 566655443 468999987642210 0011 1122245666777555 333 2457888
Q ss_pred EeCCchh
Q 009373 464 WNFSQAF 470 (536)
Q Consensus 464 W~~~~~~ 470 (536)
|++.+++
T Consensus 400 vdl~~g~ 406 (428)
T PRK01029 400 ISLITKK 406 (428)
T ss_pred EECCCCC
Confidence 9988764
No 313
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.35 E-value=0.00021 Score=63.13 Aligned_cols=188 Identities=14% Similarity=0.093 Sum_probs=103.6
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCC-------CceEEEEe---cC-----CCEEEEEeCCCcEE
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-------GCTIRAVA---AD-----KKLLVAGGTDGFIH 223 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~---~~-----~~~l~sg~~dg~i~ 223 (536)
-.=+-++|+||+.+||.+...|+|++||+... .+..+.+. ...|..+. .. ...|++-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 34467899999999999999999999998753 33333221 12232222 11 22566677777777
Q ss_pred EEEcccCccceecccCcccccceEEeeCC-ccCEEEEEEeC--CEEEEEecCCe-EEEEeCCCceEeEeeeccccEEEEe
Q 009373 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLALDL--TRIYSGSWDMT-VRVWDRALLKCLKVLRHSDWVYGLA 299 (536)
Q Consensus 224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~--~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~ 299 (536)
-|-+..+... .-.....+.+..| ...|.++.+++ +.|+.|+.... -..+. .....+++..
T Consensus 123 Sy~vs~gt~q------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWR 186 (282)
T PF15492_consen 123 SYLVSVGTNQ------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWR 186 (282)
T ss_pred eEEEEcccCC------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEE
Confidence 7765332100 0111223334333 67899999954 45555553221 00000 0011111111
Q ss_pred -----ecCCEEEEecCC------cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 300 -----PHDTTVASTSGS------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 300 -----~~~~~l~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
|.-+.+....++ +-.+|.+-+.+.... .......|..+..+|||..||+...+|.|.+|++..-
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeeccceeeeec-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 222221211111 112333332222111 1235678999999999999999999999999999876
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.4e-05 Score=74.24 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=136.6
Q ss_pred CccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCc
Q 009373 252 HEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGC 322 (536)
Q Consensus 252 h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~ 322 (536)
|.+.|+.+.. ..+++++++.||.++.|--..-.-+.... |...+.++. .++.++.+.+ |..++++|+.+-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 7777877766 67899999999999999754322222222 666666554 7777888755 6899999998765
Q ss_pred EEEEEccccccceEEEEEeC-CC---CEEEEE-cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEE
Q 009373 323 LLTVVNGAHVGNTKSLARSH-TG---DFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS 395 (536)
Q Consensus 323 ~~~~~~~~~~~~i~~l~~~~-~~---~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s 395 (536)
.+..++.. .....+.|.. .| ..++++ -.+|.+.|+|-..... .....-.-|..+|..+.+.+ +.+++
T Consensus 88 minmiKL~--~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 88 MINMIKLV--DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred hhhhcccc--cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC----ccceecccccCceEEEEeeccccceee
Confidence 55433211 1111222222 22 134443 4578999999776632 23344456999999999976 77888
Q ss_pred EeCCCcEEEEECCc-ccccCCC--CCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373 396 AAGDGKLSLIDVRK-LLRSGRP--TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 396 ~s~dg~i~vwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~ 472 (536)
....|.|.-|.... .+.+... ..-+....+..+.. .......+.+++++..+.+-+.|..|+++++.+|..+
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-----~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-----AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccc-----cccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 88889999999873 1111110 00000111111111 1122345677777889999999999999999999988
Q ss_pred HHHHHh
Q 009373 473 ERRARA 478 (536)
Q Consensus 473 ~~~~~~ 478 (536)
+.....
T Consensus 237 qeiDE~ 242 (558)
T KOG0882|consen 237 QEIDEV 242 (558)
T ss_pred hhhhcc
Confidence 766443
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=0.00077 Score=58.64 Aligned_cols=218 Identities=16% Similarity=0.138 Sum_probs=123.8
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccc
Q 009373 166 VLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ 243 (536)
Q Consensus 166 ~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 243 (536)
..+++.++..|+.|++...-|..+..++...+-.+.... ++.+....|+.+...|.+.--+..+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~------------- 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY------------- 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC-------------
Confidence 456789999999999999999999988887655443322 33454556666677776655544332
Q ss_pred cceEEeeCC--ccCEEEE-EEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEE---Ee-ecCCEEEEecCC-----
Q 009373 244 NTQFRLWEH--EGPITSL-ALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG---LA-PHDTTVASTSGS----- 311 (536)
Q Consensus 244 ~~~~~~~~h--~~~v~~l-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~---~~-~~~~~l~~~~d~----- 311 (536)
....+..| .++|.+- .+-+..+..+.-||.+.-+| ..|+.+..+...++|.. .+ |..+.+..+..+
T Consensus 168 -~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~ 245 (354)
T KOG4649|consen 168 -SSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAP 245 (354)
T ss_pred -CcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEe
Confidence 11222222 2344332 22344555566777777777 56666666655555542 22 333444444433
Q ss_pred ----cEEEEeCCCCcEEEEEccccccceEEEEEe-C---CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373 312 ----DVYIWDTNSGCLLTVVNGAHVGNTKSLARS-H---TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV 383 (536)
Q Consensus 312 ----~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~-~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 383 (536)
.-.+|..++|.....+... -...+++ | ..++|..++.||.+.|.-.+.. +.....|.+.+
T Consensus 246 ~p~~ghL~w~~~~g~t~~vy~~p----~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--------l~~~~s~~g~l 313 (354)
T KOG4649|consen 246 LPIAGHLLWATQSGTTLHVYLSP----KLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--------LAEISSNGGEL 313 (354)
T ss_pred ccccceEEEEecCCcEEEEEeCc----ccceeccCCCCcchhhhhhhcCCCcEEEEEeccc--------ccccccCCCcc
Confidence 3345555555333332110 0011111 1 1356778889998877754332 33333444433
Q ss_pred EEEE--------E-cC----CeEEEEeCCCcEEEEECCcc
Q 009373 384 NSLA--------F-EF----PWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 384 ~~l~--------~-~~----~~l~s~s~dg~i~vwd~~~~ 410 (536)
..+. | +| ..|+.|+.|..++-||+.+.
T Consensus 314 q~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 314 QNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred ceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence 3322 2 23 68999999999999999763
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=6e-07 Score=89.76 Aligned_cols=188 Identities=10% Similarity=0.118 Sum_probs=129.9
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--CCCEEEEEeCCC--cEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--DKKLLVAGGTDG--FIHCW 225 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~dg--~i~vw 225 (536)
..++++.|+...+|++|+-+.++|+.|+..|.|++|++.+|........|+.+++-+.| +|..+++.+... ...+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 35688999999999999999999999999999999999999999999999999998875 566666554433 46788
Q ss_pred EcccCccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeee-------ccccEE
Q 009373 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVY 296 (536)
Q Consensus 226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~v~ 296 (536)
++.+. ......+ ..-.++.|.. ..-+.|..-..+.+||+.++..+.++- ......
T Consensus 1173 ~~~s~------------~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1173 DASST------------GGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred ccccc------------cCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 87442 1122222 2334566622 222334444678899999988776632 112222
Q ss_pred EEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 297 GLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 297 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
.++|...+++-- | .+||++..+.+..|.. .. .--.-.|+|.|.-++..+ .|||+++-
T Consensus 1237 ~FsP~D~LIlnd--G--vLWDvR~~~aIh~FD~-ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1237 HFSPCDTLILND--G--VLWDVRIPEAIHRFDQ-FT-DYGGGGFHPSGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred ccCCCcceEeeC--c--eeeeeccHHHHhhhhh-he-ecccccccCCCceEEeec-----hhhhhHHH
Confidence 344666655432 2 5799998877777642 22 112335999999888875 48999987
No 317
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=98.27 E-value=4.5e-07 Score=80.42 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=59.1
Q ss_pred ccCCcHHHHHHHhcC-----CChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCC-CCCCCCCCCchhhhhh
Q 009373 64 ITDLPPALISEILNC-----LDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPL-GAGFSDDKSWKELFVE 137 (536)
Q Consensus 64 l~~Lp~ei~~~I~~~-----L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~-~~~~~~~~~Wk~~~~~ 137 (536)
|..||+|+++.||.. ||.++|.++++|||.|+..++++.+|+..|.+.|+........ .........|+.++.+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE 186 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence 678999999999976 7889999999999999999999999999888999754332211 1113335678887776
Q ss_pred hh
Q 009373 138 RE 139 (536)
Q Consensus 138 ~~ 139 (536)
|-
T Consensus 187 Rp 188 (366)
T KOG2997|consen 187 RP 188 (366)
T ss_pred Cc
Confidence 43
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00012 Score=73.92 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=124.3
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCce-EEEEe--cCCCEEEEEeCCC-----cEEEEEcccCc
Q 009373 160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVA--ADKKLLVAGGTDG-----FIHCWRAVEVL 231 (536)
Q Consensus 160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~--~~~~~l~sg~~dg-----~i~vwd~~~~~ 231 (536)
.|.| +++.+..++.|+.+|.|.+.+- .-+.+..++.+... +..+. ....+|++.+.|+ .+++|+++.-.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6665 5778889999999999887772 23344667766665 33333 2335777777664 48999986542
Q ss_pred cceecccCcccccce--EEeeC-----CccCEEEEEE--eCCEEEEEecCCeEEEEeCC--C--c-eEeEeeeccccEEE
Q 009373 232 PHLFDISGSEKQNTQ--FRLWE-----HEGPITSLAL--DLTRIYSGSWDMTVRVWDRA--L--L-KCLKVLRHSDWVYG 297 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~--~~~~~-----h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~--~--~-~~~~~~~~~~~v~~ 297 (536)
. .....+. ....+ ...++.+++. +-..++.|-.||.|..+.-+ . + +.........+|+.
T Consensus 104 ~-------n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg 176 (933)
T KOG2114|consen 104 K-------NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG 176 (933)
T ss_pred C-------CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence 1 0101111 12222 2456777777 55788999999999998421 1 1 11112226678998
Q ss_pred Ee--ecCCE-EEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 298 LA--PHDTT-VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 298 ~~--~~~~~-l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
+. .++.. +++++...|.+|.+....+.......|....+|..+++....+++++.. .+.+||....
T Consensus 177 L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~ 245 (933)
T KOG2114|consen 177 LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGR 245 (933)
T ss_pred eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCc
Confidence 87 44544 6666778899999984443334334688899999998866645555443 5999998765
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.0005 Score=69.55 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=122.2
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccC-EEEEEE-eC-CEEEEEecCC-----
Q 009373 202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP-ITSLAL-DL-TRIYSGSWDM----- 273 (536)
Q Consensus 202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~-~~-~~l~s~s~dg----- 273 (536)
.+.++++.+..++.|+.+|.|.+.+-. ......+..+... |..+.. ++ +.|++.+.|+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s--------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ 92 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS--------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV 92 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc--------------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence 788889999999999999999888731 2233455566655 555544 33 5788877765
Q ss_pred eEEEEeCCC------ceEe---Eeee-----ccccEEEE--eecCCEEEEec-CCcEEEEeCC--CCc-EEEEEcccccc
Q 009373 274 TVRVWDRAL------LKCL---KVLR-----HSDWVYGL--APHDTTVASTS-GSDVYIWDTN--SGC-LLTVVNGAHVG 333 (536)
Q Consensus 274 ~i~iwd~~~------~~~~---~~~~-----~~~~v~~~--~~~~~~l~~~~-d~~i~i~d~~--~~~-~~~~~~~~~~~ 333 (536)
.++|||++. ..++ ..+. .+.++.++ +.+-+.+|+|- +|.|..+.-. ..+ ....+......
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~ 172 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE 172 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence 489999863 3344 2222 12334444 46677788887 8888888421 111 11222223566
Q ss_pred ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-Ce-EEEEeCCCcEEEEECCcc
Q 009373 334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PW-LVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~-l~s~s~dg~i~vwd~~~~ 410 (536)
+|+.+.+..++..++-...-..|.+|.+.... .....+..|..+++|..+++ .. +++++ +..+.+||....
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 99999999988873333344569999998441 23455778888999999975 33 44444 346999998753
No 320
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.20 E-value=0.0026 Score=64.68 Aligned_cols=186 Identities=13% Similarity=0.041 Sum_probs=113.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEE----------EEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIR----------AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 238 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~----------~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 238 (536)
+..|+.++.++.|.-.|..+|+.+..+..... .+. .+...+..++.++.|+.+...|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~-- 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK-- 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec--
Confidence 55777788889999999999998887643211 111 11234567888899999999999888632110
Q ss_pred CcccccceEEeeCCc--cCEEE-EEEeCCEEEEEec------CCeEEEEeCCCceEeEeee--ccc--------------
Q 009373 239 GSEKQNTQFRLWEHE--GPITS-LALDLTRIYSGSW------DMTVRVWDRALLKCLKVLR--HSD-------------- 293 (536)
Q Consensus 239 ~~~~~~~~~~~~~h~--~~v~~-l~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~--~~~-------------- 293 (536)
....+. ..+++ -...++.++.+.. +|.|..+|.++|+.+..+. ...
T Consensus 147 ---------~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~ 217 (527)
T TIGR03075 147 ---------KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGE 217 (527)
T ss_pred ---------ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccc
Confidence 000111 11211 1223445655543 6899999999999887765 111
Q ss_pred ----------------cE---EEEeecCCEEEEec-C-----C-----------cEEEEeCCCCcEEEEEccc-ccc---
Q 009373 294 ----------------WV---YGLAPHDTTVASTS-G-----S-----------DVYIWDTNSGCLLTVVNGA-HVG--- 333 (536)
Q Consensus 294 ----------------~v---~~~~~~~~~l~~~~-d-----~-----------~i~i~d~~~~~~~~~~~~~-~~~--- 333 (536)
.+ .++.+...++..+. + + +|.-.|+++|+..-.+... |..
T Consensus 218 ~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 218 PGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY 297 (527)
T ss_pred cccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence 01 13334444554443 1 1 5777899999988776532 211
Q ss_pred ----ceEEEEEeCCCC---EEEEEcCCCcEEEEEcccCcc
Q 009373 334 ----NTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT 366 (536)
Q Consensus 334 ----~i~~l~~~~~~~---~l~tg~~dg~i~iwd~~~~~~ 366 (536)
...-+....+|+ .++.+..+|.+++.|-.+++.
T Consensus 298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 112222334665 788999999999999988854
No 321
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.17 E-value=0.0033 Score=67.96 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=139.9
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEECC-------------CC----------ceeeeeCCC-------------
Q 009373 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-------------DG----------FSIASSKPL------------- 199 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~-------------~~----------~~~~~~~~~------------- 199 (536)
.-..+|.+++||||+.+|+..+.++++.+-+-. -| +.-..|+|.
T Consensus 118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 346789999999999999999999988776421 00 111111110
Q ss_pred -------------CceEEEEecCCCEEEEEeC---C---CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEE
Q 009373 200 -------------GCTIRAVAADKKLLVAGGT---D---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 260 (536)
Q Consensus 200 -------------~~~v~~~~~~~~~l~sg~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 260 (536)
...-.++..||.++++.+. . ..++||+-+ |. ....-..-.+--.+++
T Consensus 198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-------------L~stSE~v~gLe~~l~ 263 (928)
T PF04762_consen 198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-------------LQSTSEPVDGLEGALS 263 (928)
T ss_pred CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-------------EEeccccCCCccCCcc
Confidence 1122344578899998875 2 468888754 21 1111111122233567
Q ss_pred E--eCCEEEEEec---CCeEEEEeCCCceEeEeee-----ccccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEE--EE
Q 009373 261 L--DLTRIYSGSW---DMTVRVWDRALLKCLKVLR-----HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLL--TV 326 (536)
Q Consensus 261 ~--~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~--~~ 326 (536)
| .|+.+++.-. ...|.+|.- +|-....|. ....|..+. +++..|+......|.+|-..+-... +.
T Consensus 264 WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 264 WRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQE 342 (928)
T ss_pred CCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEE
Confidence 7 6777777654 345666664 333333333 345677776 7788888877767999988775422 22
Q ss_pred EccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEccc----Ccc--c------------------------cccceeee
Q 009373 327 VNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIIN----DCT--E------------------------ANVLLVAT 375 (536)
Q Consensus 327 ~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~----~~~--~------------------------~~~~~~~~ 375 (536)
+.......+..+.|+|.. ..|...+.+|.+..+++.- ... . +.+-....
T Consensus 343 i~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 343 IRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred EEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 221233345558899854 4566666667766655421 100 0 00001111
Q ss_pred ccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 376 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 376 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
+ .-..+|.+++|++ ..+++-..||.|.+|....
T Consensus 423 l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 423 L-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred E-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1 1356899999976 3499999999999998654
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.16 E-value=0.0014 Score=66.39 Aligned_cols=232 Identities=16% Similarity=0.187 Sum_probs=133.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeCCCCce-----EE-EEecCCCEEEEEe---------CCCcEEEEEcccCcccee
Q 009373 171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----IR-AVAADKKLLVAGG---------TDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~ 235 (536)
..++.++.++.|.-+|.++|+.+......... +. .....+..++.++ .+|.+..+|..+++..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W- 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW- 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee-
Confidence 67888889999999999999998877543220 11 1112235566654 36788999998886322
Q ss_pred cccCcccccceEE-------eeCCc-cCEE-EEEE--eCCEEEEEecCC------------------eEEEEeCCCceEe
Q 009373 236 DISGSEKQNTQFR-------LWEHE-GPIT-SLAL--DLTRIYSGSWDM------------------TVRVWDRALLKCL 286 (536)
Q Consensus 236 ~~~~~~~~~~~~~-------~~~h~-~~v~-~l~~--~~~~l~s~s~dg------------------~i~iwd~~~~~~~ 286 (536)
............. ...+. ..|. +.++ .++.++.++.++ .|.-+|..+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1111000000000 00111 1121 2333 356777777665 7999999999999
Q ss_pred Eeeecc---cc---------EEEEe-ecCC---EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE
Q 009373 287 KVLRHS---DW---------VYGLA-PHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT 349 (536)
Q Consensus 287 ~~~~~~---~~---------v~~~~-~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t 349 (536)
..++.. .. +..+. -++. .++.++ +|.+..+|.++|+.+-..... ...+..+| ..++.
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv 343 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYL 343 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEE
Confidence 887621 11 11111 1232 455555 899999999999988776421 11223333 22332
Q ss_pred E------------------cCCCcEEEEEcccCccccccceeeeccCC--C------CCe--EEEEEcCCeEEEEeCCCc
Q 009373 350 G------------------GEDGAIHMYEIINDCTEANVLLVATWIPH--T------GPV--NSLAFEFPWLVSAAGDGK 401 (536)
Q Consensus 350 g------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~------~~v--~~l~~~~~~l~s~s~dg~ 401 (536)
+ ..+|.+.-.|+.+++. +-..... . .+. ..+...++.|+.++.||.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~------~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~ 417 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV------VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY 417 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcE------eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe
Confidence 2 2356787888877732 2211111 0 111 234556789999999999
Q ss_pred EEEEECCcccccCC
Q 009373 402 LSLIDVRKLLRSGR 415 (536)
Q Consensus 402 i~vwd~~~~~~~~~ 415 (536)
|+.+|.++++..++
T Consensus 418 l~ald~~tG~~lW~ 431 (488)
T cd00216 418 FRAFDATTGKELWK 431 (488)
T ss_pred EEEEECCCCceeeE
Confidence 99999999766554
No 323
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.10 E-value=0.0077 Score=55.06 Aligned_cols=183 Identities=20% Similarity=0.179 Sum_probs=113.1
Q ss_pred Eec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC
Q 009373 206 VAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL 282 (536)
Q Consensus 206 ~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~ 282 (536)
+.+ ++.++++--..+.|..|+..++.. ..+... . ...+++ .++.++.+..++ +.++|..+
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~--------------~~~~~~-~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~ 69 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEV--------------EVIDLP-G-PNGMAFDRPDGRLYVADSGG-IAVVDPDT 69 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEE--------------EEEESS-S-EEEEEEECTTSEEEEEETTC-EEEEETTT
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeE--------------EEEecC-C-CceEEEEccCCEEEEEEcCc-eEEEecCC
Confidence 344 556666666788899998866531 111111 2 555566 356777777655 45559988
Q ss_pred ceEeEeeec------cccEEEEe--ecCCEEEEecC---------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC
Q 009373 283 LKCLKVLRH------SDWVYGLA--PHDTTVASTSG---------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD 345 (536)
Q Consensus 283 ~~~~~~~~~------~~~v~~~~--~~~~~l~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 345 (536)
++....... ....+.+. ++|++.++... +.+..++.. ++..... ......+.++|+|+++
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~--~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA--DGLGFPNGIAFSPDGK 146 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE--EEESSEEEEEEETTSS
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe--cCcccccceEECCcch
Confidence 866554442 23344444 88887777652 347777777 5543333 2456688999999998
Q ss_pred EEE-EEcCCCcEEEEEcccCcc-ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373 346 FLF-TGGEDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 346 ~l~-tg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 408 (536)
.|+ +-+..+.|..|++..... ......+..+....+..-.++++. ++.++....+.|.++|.+
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 665 667788899999875432 112223333333334578899974 555555678899999976
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.06 E-value=0.0021 Score=58.72 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=111.6
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeC-----CCcEEEEECC-CCceeeeeCCCCceE--EEEecCCCEEEEEeC----
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGY-----DSIVRMWHLE-DGFSIASSKPLGCTI--RAVAADKKLLVAGGT---- 218 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~-----dg~v~iwd~~-~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~---- 218 (536)
-+.|.|| -.|++||++|+|.-. .|.|-|||.. +-+.+..+..+...- +.+.||+..|+++-.
T Consensus 49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET 122 (305)
T ss_pred CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence 4678888 359999999998644 5889999998 556777776655433 234688877776532
Q ss_pred ---CCcEEEEEcccCccceecc-cCcccccceEEe--eCCccCEEEEEEeC-CEEEEEe-cCC-------eEEEEeCCCc
Q 009373 219 ---DGFIHCWRAVEVLPHLFDI-SGSEKQNTQFRL--WEHEGPITSLALDL-TRIYSGS-WDM-------TVRVWDRALL 283 (536)
Q Consensus 219 ---dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~--~~h~~~v~~l~~~~-~~l~s~s-~dg-------~i~iwd~~~~ 283 (536)
.|..++ |+.+..+.+.-+ ...........+ ..|..+|..+++++ ..++.|. ..| -|-+++..
T Consensus 123 hpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g-- 199 (305)
T PF07433_consen 123 HPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG-- 199 (305)
T ss_pred CcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--
Confidence 133322 333333332222 111112223334 34777888888833 2333332 222 23333322
Q ss_pred eEeEeee--------ccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc
Q 009373 284 KCLKVLR--------HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG 351 (536)
Q Consensus 284 ~~~~~~~--------~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~ 351 (536)
+.+..+. ...++-+|+ .++..+++++ .+.+.+||..+++.+.... -..+..++..+++ ++++.
T Consensus 200 ~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ss- 274 (305)
T PF07433_consen 200 GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSS- 274 (305)
T ss_pred CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeC-
Confidence 2222222 345677777 5677887777 7899999999999887763 3446667666666 55544
Q ss_pred CCCcE
Q 009373 352 EDGAI 356 (536)
Q Consensus 352 ~dg~i 356 (536)
..|.+
T Consensus 275 G~G~~ 279 (305)
T PF07433_consen 275 GQGQL 279 (305)
T ss_pred CCccE
Confidence 44543
No 325
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.05 E-value=0.003 Score=56.06 Aligned_cols=99 Identities=18% Similarity=0.078 Sum_probs=64.6
Q ss_pred cCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--------ccccEEEEe---------ecCCEEEEecCCcEE
Q 009373 254 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------HSDWVYGLA---------PHDTTVASTSGSDVY 314 (536)
Q Consensus 254 ~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~---------~~~~~l~~~~d~~i~ 314 (536)
..-..++| |+..|+.+...|+|++||+..... ..+. ....|..+. ...++++....|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 34567788 778999999999999999875333 3332 123344332 233567777788777
Q ss_pred EEeCCCC-----cEEE--EEccccccceEEEEEeCCCCEEEEEcCC
Q 009373 315 IWDTNSG-----CLLT--VVNGAHVGNTKSLARSHTGDFLFTGGED 353 (536)
Q Consensus 315 i~d~~~~-----~~~~--~~~~~~~~~i~~l~~~~~~~~l~tg~~d 353 (536)
-|-+..+ +... .+...+...|.++.++|..++|++|+..
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence 7665322 2222 2333457799999999998888877654
No 326
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.01 E-value=0.0069 Score=57.86 Aligned_cols=216 Identities=16% Similarity=0.158 Sum_probs=123.8
Q ss_pred cEEEEECCCCceeeeeCC-CCceEEEEe----c-----CCCEEEEEeC----------CCcEEEEEcccCccceecccCc
Q 009373 181 IVRMWHLEDGFSIASSKP-LGCTIRAVA----A-----DKKLLVAGGT----------DGFIHCWRAVEVLPHLFDISGS 240 (536)
Q Consensus 181 ~v~iwd~~~~~~~~~~~~-~~~~v~~~~----~-----~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~ 240 (536)
.|++.|..+.+.+.++.- ....+.++. . ...+|++|.. .|.|.++++..... ..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------~~ 76 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------NN 76 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc------cc
Confidence 577888777776655422 122333332 1 1457777753 28899999876300 00
Q ss_pred ccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCce-EeEeee--ccccEEEEeecCCEEEEec-CCcEEEE
Q 009373 241 EKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR--HSDWVYGLAPHDTTVASTS-GSDVYIW 316 (536)
Q Consensus 241 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~l~~~~-d~~i~i~ 316 (536)
...... .-....++|++++.-+++|+.+. .+.|.+|++...+ ....-. ....+.++...+++++.|. -..+.++
T Consensus 77 ~~l~~i-~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 77 FKLKLI-HSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp -EEEEE-EEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred eEEEEE-EEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEE
Confidence 011111 22345789999998555555444 5899999998777 443333 4557888888788888887 6777766
Q ss_pred --eCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc----c-ccceeeeccCCCCCeEEE---
Q 009373 317 --DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----A-NVLLVATWIPHTGPVNSL--- 386 (536)
Q Consensus 317 --d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~----~-~~~~~~~~~~h~~~v~~l--- 386 (536)
+....+....-.......++++.+-++++.++++..+|.+.++........ . .+.....+. ....|+++
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~ 233 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRG 233 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE-
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEE
Confidence 442222222222234557889999877779999999999999998642111 1 112222222 24567777
Q ss_pred EEcC----------CeEEEEeCCCcEEEE
Q 009373 387 AFEF----------PWLVSAAGDGKLSLI 405 (536)
Q Consensus 387 ~~~~----------~~l~s~s~dg~i~vw 405 (536)
.+.+ ..++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 3322 148888889988843
No 327
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.01 E-value=0.013 Score=54.66 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=130.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCc-cccc
Q 009373 169 SAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS-EKQN 244 (536)
Q Consensus 169 ~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~ 244 (536)
.++.|+.|..+| +.++++... .......... |..+. ++-+.+++-+ |+.+.++++..-.......... ....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~--I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS--ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecce--EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 578899999998 899998333 2222222222 55554 5555555544 4999999986643211100000 0000
Q ss_pred ceEEeeCCccCEEEEE----EeCCEEEEEecCCeEEEEeCCCc-----eEeEeeeccccEEEEeecCCEEEEecCCcEEE
Q 009373 245 TQFRLWEHEGPITSLA----LDLTRIYSGSWDMTVRVWDRALL-----KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYI 315 (536)
Q Consensus 245 ~~~~~~~h~~~v~~l~----~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i 315 (536)
...........+..++ ..+...+.....+.|.+|..... +..+.+...+.+.++...++.++.+......+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~ 161 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYL 161 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEE
Confidence 0001112334455555 13444455555669998877543 45566667888999998899999998888999
Q ss_pred EeCCCCcEEEEEcccc-----------ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373 316 WDTNSGCLLTVVNGAH-----------VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 384 (536)
Q Consensus 316 ~d~~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 384 (536)
.|+.++.....+.... ..++..+.. +++.+|++- |..-.+.|..... .. .....+ ...+.
T Consensus 162 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~-~r--~~~i~W---~~~p~ 232 (275)
T PF00780_consen 162 IDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEP-SR--KSTIQW---SSAPQ 232 (275)
T ss_pred EecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCc-Cc--ccEEEc---CCchh
Confidence 9999876554432111 112333333 345666543 3333444543321 10 112222 23567
Q ss_pred EEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373 385 SLAFEFPWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 385 ~l~~~~~~l~s~s~dg~i~vwd~~~~ 410 (536)
++++...+|++.+.++ |.||++.++
T Consensus 233 ~~~~~~pyli~~~~~~-iEV~~~~~~ 257 (275)
T PF00780_consen 233 SVAYSSPYLIAFSSNS-IEVRSLETG 257 (275)
T ss_pred EEEEECCEEEEECCCE-EEEEECcCC
Confidence 7888878888877755 999999985
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00041 Score=63.97 Aligned_cols=153 Identities=18% Similarity=0.054 Sum_probs=92.8
Q ss_pred EEEEECCCCceeeeeCCCCceEEEEe--cCCC-EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEE
Q 009373 182 VRMWHLEDGFSIASSKPLGCTIRAVA--ADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS 258 (536)
Q Consensus 182 v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 258 (536)
|++.+..+.+....+..++..|..++ |..+ ++..++.+..|+|.|+++.. ....+..+ ..+.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------~vssy~a~-~~~wS 240 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------VVSSYIAY-NQIWS 240 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------------eeeheecc-CCcee
Confidence 56666555555555566666676554 5544 88999999999999997742 44455556 78999
Q ss_pred EEE---eCCEEEEEecCCeEEEEeCCCceEeE-eee---ccccEEEEe--------ecCCEEEEecCCcEEEEeCCC--C
Q 009373 259 LAL---DLTRIYSGSWDMTVRVWDRALLKCLK-VLR---HSDWVYGLA--------PHDTTVASTSGSDVYIWDTNS--G 321 (536)
Q Consensus 259 l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~---~~~~v~~~~--------~~~~~l~~~~d~~i~i~d~~~--~ 321 (536)
++| +.++++.|...|.|.+||++..+-.. .+. ...+|..++ +.+.+++... -.+..|.+.. +
T Consensus 241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~ 319 (463)
T KOG1645|consen 241 CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAE 319 (463)
T ss_pred eeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhcccc
Confidence 999 45789999999999999998654322 121 334455544 2233333322 2344454432 2
Q ss_pred cEEEEEccccccceEEEEEeCCCCEEEE
Q 009373 322 CLLTVVNGAHVGNTKSLARSHTGDFLFT 349 (536)
Q Consensus 322 ~~~~~~~~~~~~~i~~l~~~~~~~~l~t 349 (536)
........+..+...++.+++..+.++.
T Consensus 320 ~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 320 CLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred CCCcccccCCCcceeeeeecCccceEEE
Confidence 2222222234566667777765554443
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.99 E-value=0.0024 Score=62.79 Aligned_cols=226 Identities=12% Similarity=0.092 Sum_probs=114.9
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeC
Q 009373 202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDR 280 (536)
Q Consensus 202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~ 280 (536)
..++.+|+|+.+++ ..||.-.++..... ... ..+.-...+| ..+.+++-...++|.++.-
T Consensus 36 ~~ls~npngr~v~V-~g~geY~iyt~~~~---------------r~k---~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 36 QSLSHNPNGRFVLV-CGDGEYEIYTALAW---------------RNK---AFGSGLSFVWSSRNRYAVLESSSTIKIYKN 96 (443)
T ss_dssp SEEEE-TTSSEEEE-EETTEEEEEETTTT---------------EEE---EEEE-SEEEE-TSSEEEEE-TTS-EEEEET
T ss_pred eeEEECCCCCEEEE-EcCCEEEEEEccCC---------------ccc---ccCceeEEEEecCccEEEEECCCeEEEEEc
Confidence 34556688888888 55667767763211 111 1234445667 5577888888899999743
Q ss_pred CCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373 281 ALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd 360 (536)
-+.+....+..+..+..+-. |.+|...+++.|.+||..+++.++.+. . ..|..+.|+++|.+++..+.+ .+.|++
T Consensus 97 ~~~~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~--v-~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 97 FKNEVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRID--V-SAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp TEE-TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred CccccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEe--c-CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 23333334443333444444 888888888899999999999999984 2 248999999999999988766 577776
Q ss_pred cccCc----cccccc-eeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee
Q 009373 361 IINDC----TEANVL-LVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML 435 (536)
Q Consensus 361 ~~~~~----~~~~~~-~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (536)
..... ...... .+.....-...|.+..|.++.++-.+.. .|+.+- .+ ....+..+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~--~G----------e~~~i~~ld------ 232 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLV--NG----------ETGIIAHLD------ 232 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEE--TT----------EEEEEEE-S------
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEE--cC----------CcceEEEcC------
Confidence 54330 000000 1222222256788888877654444444 666532 11 001111111
Q ss_pred ccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373 436 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 472 (536)
Q Consensus 436 ~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~ 472 (536)
...-++...+..+.+.....|+.|..+.++.....
T Consensus 233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~ 267 (443)
T PF04053_consen 233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDLSELE 267 (443)
T ss_dssp --S--EEEEEETTTTEEEEE-TT--EEEEE--HHHHH
T ss_pred --CceEEEEEEccCCEEEEEECCCCEEEEEECHHHHH
Confidence 11223333333478999999999999998865543
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.98 E-value=0.0025 Score=67.22 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=124.6
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc----ccCcc
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA----VEVLP 232 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~----~~~~~ 232 (536)
.+.|.++.|..+++-++.+..+|.|.+-|.++... +......+..+.+++||+..++..+..+++.+-+- -...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 36899999999999999999999999999887643 23333445566777899999999998888876432 11110
Q ss_pred c---------ee---------cccCcccccceEEeeC---------CccCEEEEEE--eCCEEEE-----EecCCeEEEE
Q 009373 233 H---------LF---------DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYS-----GSWDMTVRVW 278 (536)
Q Consensus 233 ~---------~~---------~~~~~~~~~~~~~~~~---------h~~~v~~l~~--~~~~l~s-----~s~dg~i~iw 278 (536)
. .. .+.++........... -.+.=++++| ||+++++ ...-+.|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 00 0000000000000000 1112245788 7778876 2333899999
Q ss_pred eCCCceEeEeee---ccccEEEEeecCCEEEEec----CCcEEEEeCCCC---cEEEEEccccccceEEEEEeCCCCEEE
Q 009373 279 DRALLKCLKVLR---HSDWVYGLAPHDTTVASTS----GSDVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTGDFLF 348 (536)
Q Consensus 279 d~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~----d~~i~i~d~~~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~ 348 (536)
|.+ |..-..-. ......+..|.|..+++-. ++.|.+|.-+.- +-...+. ....++..++|+.++..|+
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCcee
Confidence 987 33322221 2223344448888888754 467888875432 1111121 1333489999999999988
Q ss_pred E---EcCCCcEEEEEcccC
Q 009373 349 T---GGEDGAIHMYEIIND 364 (536)
Q Consensus 349 t---g~~dg~i~iwd~~~~ 364 (536)
+ ......|++|-+.+.
T Consensus 306 v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecccccceEEEEEecCe
Confidence 7 555556999988765
No 331
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.013 Score=57.79 Aligned_cols=143 Identities=9% Similarity=0.083 Sum_probs=86.9
Q ss_pred EEEecCCCE-EEEEeCC---CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEE-EEecC--Ce
Q 009373 204 RAVAADKKL-LVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWD--MT 274 (536)
Q Consensus 204 ~~~~~~~~~-l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~d--g~ 274 (536)
-.++|+|+. ++..+.+ ..|.++|+.++. ...+....+......| |++.++ +.+.+ ..
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcE
Confidence 456799984 5544433 568888887763 1222223444445556 776654 34333 56
Q ss_pred EEEEeCCCceEeEeeeccc--cEEEEeecCCEEEEecC--C--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE
Q 009373 275 VRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTSG--S--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF 348 (536)
Q Consensus 275 i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 348 (536)
|.++|+.+++......+.. .-..++|+|+.++..++ + .|.+.|+.+++..+....+. ....|+|+|+.|+
T Consensus 259 Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia 334 (419)
T PRK04043 259 IYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIV 334 (419)
T ss_pred EEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEE
Confidence 8888988776443322322 22346699987777663 2 68888998887644432221 1248999999887
Q ss_pred EEcCC---------CcEEEEEcccC
Q 009373 349 TGGED---------GAIHMYEIIND 364 (536)
Q Consensus 349 tg~~d---------g~i~iwd~~~~ 364 (536)
..+.. ..|.+.|+.++
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCC
Confidence 66543 25777787666
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.94 E-value=0.00024 Score=69.13 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=64.2
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009373 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP 232 (536)
Q Consensus 156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 232 (536)
.....|.|++++|+...|+.|+.||+|.+||...+.....-..-.....+++|+|..+++|+..|.+.+||+.-...
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 46778999999999999999999999999999877554443334456678889999999999999999999865543
No 333
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.85 E-value=0.022 Score=52.17 Aligned_cols=219 Identities=14% Similarity=0.101 Sum_probs=129.3
Q ss_pred EEEEec-CCCEEEEEeCCCc-EEEEECCCCceeeeeCCCCceE----EEEecCCCEEEEEeC-----CCcEEEEEcccCc
Q 009373 163 TVFVLA-SAKLLFTSGYDSI-VRMWHLEDGFSIASSKPLGCTI----RAVAADKKLLVAGGT-----DGFIHCWRAVEVL 231 (536)
Q Consensus 163 ~v~~~~-~~~~l~sgs~dg~-v~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~l~sg~~-----dg~i~vwd~~~~~ 231 (536)
.++.+| ....++.+-.-|+ ..+||..+++....+......- -.+++||++|++.-. .|.|-|||...+.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 566788 4556666666654 6789999998887775544332 367899999998644 4889999997432
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEE------------------ecCCeEEEEeCCCceEeEeee-
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG------------------SWDMTVRVWDRALLKCLKVLR- 290 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~------------------s~dg~i~iwd~~~~~~~~~~~- 290 (536)
..+..+..|.-.-..+.+ ++..|+.+ +.+-++...|..+++.+....
T Consensus 89 ------------~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 89 ------------RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred ------------EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 233334333322333333 44344433 234456666777888776643
Q ss_pred ----ccccEEEEe--ecCCEEEEec-CCc-------EEEEeCCCCcEEEEEc------cccccceEEEEEeCCCCEEEEE
Q 009373 291 ----HSDWVYGLA--PHDTTVASTS-GSD-------VYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTG 350 (536)
Q Consensus 291 ----~~~~v~~~~--~~~~~l~~~~-d~~-------i~i~d~~~~~~~~~~~------~~~~~~i~~l~~~~~~~~l~tg 350 (536)
|...+.-++ .+|..++... .+. +-+++... .+..+. ..-.+.+-+|++++++.++++.
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence 445566555 5555555544 221 33443332 222221 1234578899999999877655
Q ss_pred c-CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEE
Q 009373 351 G-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLS 403 (536)
Q Consensus 351 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~ 403 (536)
+ .-|.+.+||..++ ..+... .-..+..++..+.-++..+..|.+.
T Consensus 235 sPrGg~~~~~d~~tg------~~~~~~--~l~D~cGva~~~~~f~~ssG~G~~~ 280 (305)
T PF07433_consen 235 SPRGGRVAVWDAATG------RLLGSV--PLPDACGVAPTDDGFLVSSGQGQLI 280 (305)
T ss_pred CCCCCEEEEEECCCC------CEeecc--ccCceeeeeecCCceEEeCCCccEE
Confidence 5 5678999999988 333322 2234566666553344444445543
No 334
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.3e-05 Score=71.06 Aligned_cols=44 Identities=39% Similarity=0.559 Sum_probs=41.5
Q ss_pred ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHH
Q 009373 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107 (536)
Q Consensus 64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~ 107 (536)
...||+||++.||+.|.-++|.+++.|||+|+++++|+.+|..+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 45899999999999999999999999999999999999999863
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.03 Score=55.15 Aligned_cols=206 Identities=16% Similarity=0.082 Sum_probs=101.1
Q ss_pred cEEEEECCCCceeeeeCCCCceEEEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEE
Q 009373 181 IVRMWHLEDGFSIASSKPLGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSL 259 (536)
Q Consensus 181 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 259 (536)
.|.||+.. |+.+.++.=..+.+.++.. +...|+.-..||.++++|+.... .+.+.. ......-....+...
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~-----~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGE-----EIEEEKVLECRIFAI 133 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhh-----hccccCccccccccc
Confidence 58999864 5666655333367777773 45678888899999999985332 111100 010111111222222
Q ss_pred EE-eCCEEEEEecCCeEEEEeCCCce-EeEeee-c------------cccEEEEeecCCEEEEec-CCcEEEEeCCCCcE
Q 009373 260 AL-DLTRIYSGSWDMTVRVWDRALLK-CLKVLR-H------------SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCL 323 (536)
Q Consensus 260 ~~-~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~------------~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 323 (536)
.+ +.+ ++.-..++.+.+.+-.... ....+. . ...+..+..+....+... ++.+.+.+....+.
T Consensus 134 ~~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 134 WFYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred ccCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc
Confidence 33 223 2222334444443221111 111110 0 001111222233323222 44555444332211
Q ss_pred EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEEEEcCCeEEEEeCCCcE
Q 009373 324 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLVSAAGDGKL 402 (536)
Q Consensus 324 ~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i 402 (536)
+ ...+++..+++||+|+++|.-..+|.+.+.+..-. ..+..+.. -......+.|.++-.+.......|
T Consensus 213 ---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~------~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l 281 (410)
T PF04841_consen 213 ---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS------EKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDEL 281 (410)
T ss_pred ---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc------ceeEEeecCcCCCCcEEEEECCCcEEEEeCCEE
Confidence 1 13468999999999999999999999988875444 22333222 234566777776422222224445
Q ss_pred EEEE
Q 009373 403 SLID 406 (536)
Q Consensus 403 ~vwd 406 (536)
.+..
T Consensus 282 ~lvg 285 (410)
T PF04841_consen 282 LLVG 285 (410)
T ss_pred EEEC
Confidence 5554
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.79 E-value=0.006 Score=59.23 Aligned_cols=199 Identities=14% Similarity=0.060 Sum_probs=113.0
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-------------------------------------------ee
Q 009373 160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-------------------------------------------SS 196 (536)
Q Consensus 160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~-------------------------------------------~~ 196 (536)
.|+.+.|.++..-|+.|...|.|.||.....+... -+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998999999999999999653221110 01
Q ss_pred CCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-------eC---CE
Q 009373 197 KPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-------DL---TR 265 (536)
Q Consensus 197 ~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-------~~---~~ 265 (536)
+...++|.++. .+=.+++.|..+|.+.|.|++... .++...-.+ ...-......|+++.| |+ -.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~----~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA-VIYNENIRE----SFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG------T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe-EEeeccccc----cccccccccCeeEEEEEEEecCCCcccceE
Confidence 22345666776 466799999999999999996543 222211000 0001123456777877 22 35
Q ss_pred EEEEecCCeEEEEeCC--C-ceEeE----ee-eccccEEEEee------------------------cCCEEEEecCCcE
Q 009373 266 IYSGSWDMTVRVWDRA--L-LKCLK----VL-RHSDWVYGLAP------------------------HDTTVASTSGSDV 313 (536)
Q Consensus 266 l~s~s~dg~i~iwd~~--~-~~~~~----~~-~~~~~v~~~~~------------------------~~~~l~~~~d~~i 313 (536)
+++|...|.+.+|.+. . +.... .. .+.+.|..+.+ -..+++++++..+
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 8899999999999764 1 21111 11 24455544431 0236788889999
Q ss_pred EEEeCCCCcEEEEEccccccceEEEEEe-----CCCCEEEEEcCCCcEEEEEcccC
Q 009373 314 YIWDTNSGCLLTVVNGAHVGNTKSLARS-----HTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 314 ~i~d~~~~~~~~~~~~~~~~~i~~l~~~-----~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
+++...+.+....... .......+.+- ..+..|++-..+|.|++|.+..-
T Consensus 238 rv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp EEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred EEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 9999998877666542 22233334442 35667888889999999999776
No 337
>PHA02713 hypothetical protein; Provisional
Probab=97.77 E-value=0.0032 Score=64.66 Aligned_cols=214 Identities=11% Similarity=0.035 Sum_probs=114.5
Q ss_pred CcEEEEECCCCcee--eeeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEcccCccceecccCcccccceEEeeC
Q 009373 180 SIVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 251 (536)
Q Consensus 180 g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (536)
..+..||..+++-. ..+............++..++.||.+ ..+..||..+... .....+..
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-----------~~~~~m~~ 340 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-----------VELPPMIK 340 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-----------eeCCCCcc
Confidence 35677888776422 22221111112233577788888754 3467777655421 11111111
Q ss_pred CccCEEEEEEeCCEEEEEecCC-----eEEEEeCCCceEeE--eeecc-ccEEEEeecCCEEEEec-C------------
Q 009373 252 HEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLK--VLRHS-DWVYGLAPHDTTVASTS-G------------ 310 (536)
Q Consensus 252 h~~~v~~l~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~--~~~~~-~~v~~~~~~~~~l~~~~-d------------ 310 (536)
..........++...+.|+.++ ++..||..+.+-.. .+... .....+..++.+.+.|+ +
T Consensus 341 ~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred hhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccc
Confidence 1122233444777778888764 47889987654322 11211 11122335677777665 3
Q ss_pred -----------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC------cEEEEEccc-Cccccccce
Q 009373 311 -----------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG------AIHMYEIIN-DCTEANVLL 372 (536)
Q Consensus 311 -----------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg------~i~iwd~~~-~~~~~~~~~ 372 (536)
..+..||+.+.+....-. -.......-...-++++.+.|+.++ .+..||..+ .. +..
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~ 495 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WEL 495 (557)
T ss_pred cccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC----eeE
Confidence 247788988775432211 1111111111223567777777542 467888876 31 234
Q ss_pred eeeccCCCCCeEEEEEcCCeEEEEeCCC--cEEEEECCc
Q 009373 373 VATWIPHTGPVNSLAFEFPWLVSAAGDG--KLSLIDVRK 409 (536)
Q Consensus 373 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg--~i~vwd~~~ 409 (536)
+..+.........+.+++...++|+.|| .+..||+.+
T Consensus 496 ~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 496 ITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ccccCcccccceeEEECCEEEEEeeecceeehhhcCccc
Confidence 4445445555666667788888999888 677888776
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.77 E-value=1.6e-05 Score=77.30 Aligned_cols=242 Identities=16% Similarity=0.160 Sum_probs=139.1
Q ss_pred cccEEEEEEecCC--CEEEEEeCCCcEEEEECCCCce--eeeeCCCCceEEEEe---cCCCEEEEEe----CCCcEEEEE
Q 009373 158 TEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA---ADKKLLVAGG----TDGFIHCWR 226 (536)
Q Consensus 158 ~~~V~~v~~~~~~--~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~---~~~~~l~sg~----~dg~i~vwd 226 (536)
...+.|+++.-+. .+++.|..+|.|.+-.+....- .....++..++.+++ .|.+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3456677665443 4788999999999988754322 233345555565555 3556777763 357799999
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE-eEeeeccccEE--EEee-
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLRHSDWVY--GLAP- 300 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~--~~~~- 300 (536)
+.++....+ ....+.- +-.....+++| +.+.+++|...+.+.++|++.... ...+ ....+. .+.|
T Consensus 136 i~s~ltvPk-------e~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPK-------ESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NTKYVQGITVDPF 206 (783)
T ss_pred cccccCCCc-------ccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hhhhcccceecCC
Confidence 987632110 1111111 13344557888 667889999999999999873221 1111 122233 3445
Q ss_pred cCCEEEEecCCcEEEEe-CCCCc-EEEEEc---cccccceEEEEEeCCCC-EEEEEcC-CCcEEEEEcccCcccccc---
Q 009373 301 HDTTVASTSGSDVYIWD-TNSGC-LLTVVN---GAHVGNTKSLARSHTGD-FLFTGGE-DGAIHMYEIINDCTEANV--- 370 (536)
Q Consensus 301 ~~~~l~~~~d~~i~i~d-~~~~~-~~~~~~---~~~~~~i~~l~~~~~~~-~l~tg~~-dg~i~iwd~~~~~~~~~~--- 370 (536)
.+.++++..+|.|.+|| .+.-+ ++..+. ......+..++|+|... .+++... .++|+.||+.........
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~ 286 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS 286 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence 78898888899999999 33322 222221 11223588999999643 4455444 578999998654322110
Q ss_pred --ceeee---ccCC--CCCeEEEEEcC----CeEEEEeCCCcEEEEECC
Q 009373 371 --LLVAT---WIPH--TGPVNSLAFEF----PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 371 --~~~~~---~~~h--~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~ 408 (536)
..... ++.. ...|.+..|++ ...+++-..-.+.-+++.
T Consensus 287 ~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 287 VFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred ceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 01111 1111 24566666654 345555555555555554
No 339
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.75 E-value=0.0037 Score=64.08 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=129.5
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEcccCccce
Q 009373 169 SAKLLFTSGYDS------IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRAVEVLPHL 234 (536)
Q Consensus 169 ~~~~l~sgs~dg------~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~~ 234 (536)
.+.+++.|+.++ .+..+|..+++-.. .+............++...++|+.| .++..||..++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--- 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--- 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc---
Confidence 466777887773 67888888773322 2222222333334677888999998 346667765543
Q ss_pred ecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCe-----EEEEeCCCceEeEeeeccccE---EEEeecCCEEE
Q 009373 235 FDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMT-----VRVWDRALLKCLKVLRHSDWV---YGLAPHDTTVA 306 (536)
Q Consensus 235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~v---~~~~~~~~~l~ 306 (536)
......+............++...+.|+.||. |-.||..+.+-...-...... -....++.+.+
T Consensus 361 --------W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 361 --------WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred --------eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 22222232233333334448888899999874 677887665433322211122 22236777777
Q ss_pred Eec-C------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc-----EEEEEcccCccccccceee
Q 009373 307 STS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-----IHMYEIINDCTEANVLLVA 374 (536)
Q Consensus 307 ~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~-----i~iwd~~~~~~~~~~~~~~ 374 (536)
+|+ + .++..||..++.....-.-.....-..++. -++.+.+.|+.|+. |..||..+.. +..+.
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~----W~~v~ 507 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ----WTMVA 507 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc----eeEcc
Confidence 776 4 248899998876433221001111111222 25778888887763 7778887762 23444
Q ss_pred eccCCCCCeEEEEEcCCeEEEEeCCC-----cEEEEECCc
Q 009373 375 TWIPHTGPVNSLAFEFPWLVSAAGDG-----KLSLIDVRK 409 (536)
Q Consensus 375 ~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~ 409 (536)
.+......+.....+....++|+.|| +|..||..+
T Consensus 508 ~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cCccccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 44455556666666777888888775 466666554
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.73 E-value=0.026 Score=52.61 Aligned_cols=221 Identities=14% Similarity=0.153 Sum_probs=124.9
Q ss_pred ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce
Q 009373 207 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK 284 (536)
Q Consensus 207 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~ 284 (536)
...++.|+.|..+| +.+++..... ..... .+...|..+.. +-+.+++-+ |+.+.++++....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~------------~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPS------------KPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCc------------cceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence 35678899999998 8899872211 11111 12333888888 345555554 5999999987554
Q ss_pred EeE---------------eeeccccEEEEe-----ecCCEEEEecCCcEEEEeCCCC-----cEEEEEccccccceEEEE
Q 009373 285 CLK---------------VLRHSDWVYGLA-----PHDTTVASTSGSDVYIWDTNSG-----CLLTVVNGAHVGNTKSLA 339 (536)
Q Consensus 285 ~~~---------------~~~~~~~v~~~~-----~~~~~l~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~i~~l~ 339 (536)
... .+.....+..++ .....++++...+|.+|..... +....+. -...+.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~ 145 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIA 145 (275)
T ss_pred cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEE
Confidence 433 222223333333 3344566666778888877653 4555553 557888999
Q ss_pred EeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc----------CCCCCeEEEEEcC-CeEEEEeCCCcEEEEECC
Q 009373 340 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI----------PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 340 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~ 408 (536)
|. ++.++.|..++ ..+.|+.++.. ..+.... ....++..+..+. .+|++- |..-.+.|..
T Consensus 146 ~~--~~~i~v~~~~~-f~~idl~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~ 216 (275)
T PF00780_consen 146 FL--GNKICVGTSKG-FYLIDLNTGSP----SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKN 216 (275)
T ss_pred Ee--CCEEEEEeCCc-eEEEecCCCCc----eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCC
Confidence 98 56777776555 78889886632 1111111 1223455555553 444432 2233333332
Q ss_pred cccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHH
Q 009373 409 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER 474 (536)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~ 474 (536)
. .... . ..+. -.....++.....||+..+.++ |.||++.+++.++.
T Consensus 217 G-~~~r----------------~-~~i~-W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 217 G-EPSR----------------K-STIQ-WSSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQT 262 (275)
T ss_pred C-CcCc----------------c-cEEE-cCCchhEEEEECCEEEEECCCE-EEEEECcCCcEEEE
Confidence 2 1110 0 0011 1123345555667888887755 99999999966543
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.72 E-value=0.026 Score=53.90 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=89.7
Q ss_pred CeEEEEeCCCc-----eE--eEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC
Q 009373 273 MTVRVWDRALL-----KC--LKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG 344 (536)
Q Consensus 273 g~i~iwd~~~~-----~~--~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~ 344 (536)
|.|.++++... +. +......++|+++.+-+..++++.++.|.+|++...+ ....-.......+.++... +
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 89999999884 22 2333478999999976777888889999999998887 4444321223355555554 6
Q ss_pred CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCc
Q 009373 345 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 345 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 409 (536)
+++++|..-..+.++.++... ..+..+.. ......++++.|- .+.++.+..+|.+.++....
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~--~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEEN--NKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTT--E-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cEEEEEEcccCEEEEEEEccC--CEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 799999998899988766531 11222222 2234457777773 46999999999999998863
No 342
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=3.8e-05 Score=77.42 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=117.2
Q ss_pred eeeeeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEE
Q 009373 192 SIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY 267 (536)
Q Consensus 192 ~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~ 267 (536)
..++++.+....+ +|+.+.+.|+.|+..|.|+++++.+|. ......+|.++|+-+.. +|..++
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------------~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------------MEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------------ccccccccccccccccccCCcceee
Confidence 3445555655444 455678899999999999999998874 44456789999999987 777666
Q ss_pred EEec-CC-eEEEEeCCC-ceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccc---cccceEEEEE
Q 009373 268 SGSW-DM-TVRVWDRAL-LKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLAR 340 (536)
Q Consensus 268 s~s~-dg-~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~~i~~l~~ 340 (536)
+.+. .. -..+|++.+ +...+.+.....| .++.....-+.|. .....+||++++..+.++..+ ....-++..|
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~~Hsf~ed~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFDEDKAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred eeccccCchHHHhccccccCcccccccccee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 5443 33 467899764 3344444322221 1222222223333 577899999999887764322 2223367889
Q ss_pred eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccccc
Q 009373 341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS 413 (536)
Q Consensus 341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~ 413 (536)
+|+..+++ .|| .+||++.. ..++.+...+..+ .=.|+| .-++.-+ .|||+++....
T Consensus 1239 sP~D~LIl---ndG--vLWDvR~~------~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIP------EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred CCCcceEe---eCc--eeeeeccH------HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHH
Confidence 99988776 466 46999887 3444433222111 113444 3444433 47888876443
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.65 E-value=0.0046 Score=47.00 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=66.1
Q ss_pred EEEEEE---eC---CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEE
Q 009373 256 ITSLAL---DL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVV 327 (536)
Q Consensus 256 v~~l~~---~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 327 (536)
|+++++ ++ +.|++||.|..|++|+- .+.+..+...+.|.++. ..+..++.+. +|+|-+|+-. ..+..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeee
Confidence 566665 33 58999999999999984 46778888888899888 3334455444 8999999763 233334
Q ss_pred ccccccceEEEEEeC-CC---CEEEEEcCCCcEE
Q 009373 328 NGAHVGNTKSLARSH-TG---DFLFTGGEDGAIH 357 (536)
Q Consensus 328 ~~~~~~~i~~l~~~~-~~---~~l~tg~~dg~i~ 357 (536)
+ ....+.++.+.. ++ .-|++|-.+|.|-
T Consensus 78 K--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 K--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3 333466666543 32 3689999999874
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.61 E-value=0.00043 Score=67.43 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=67.0
Q ss_pred EEEEeCCCCcE--EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373 313 VYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 313 i~i~d~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
-.+|++..++. +....-.....+.+++++|+...++.|+.||+|.+||...+ +..+....-.++.++|+|
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHP 309 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcC
Confidence 44566655432 22222247889999999999999999999999999998766 222223445678999987
Q ss_pred --CeEEEEeCCCcEEEEECCc
Q 009373 391 --PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 391 --~~l~s~s~dg~i~vwd~~~ 409 (536)
..+++|+.-|.+.+||+.-
T Consensus 310 ~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCcEEEEEcCCceEEEEEeec
Confidence 5999999999999999863
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.60 E-value=0.00016 Score=43.70 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=33.7
Q ss_pred ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 009373 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 186 (536)
Q Consensus 150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd 186 (536)
....+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3567789999999999999999999999999999996
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.59 E-value=0.022 Score=55.38 Aligned_cols=249 Identities=19% Similarity=0.178 Sum_probs=110.0
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcccCccce------------------------ecccC------cccccceEEeeCCc
Q 009373 204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHL------------------------FDISG------SEKQNTQFRLWEHE 253 (536)
Q Consensus 204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~------------------------~~~~~------~~~~~~~~~~~~h~ 253 (536)
.+++++...|++|...|.|.+|.+......- .+... .+...+...+....
T Consensus 7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~ 86 (395)
T PF08596_consen 7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQ 86 (395)
T ss_dssp EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S
T ss_pred EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccC
Confidence 4556788899999999999999886543211 00000 00011122222334
Q ss_pred cCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccc
Q 009373 254 GPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHV 332 (536)
Q Consensus 254 ~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~ 332 (536)
++|++++. |=.+++.|..+|.+.|.|++....+..-.-.. ........
T Consensus 87 g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------------------~~~~~~~~ 135 (395)
T PF08596_consen 87 GPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------------------SFLSKSSS 135 (395)
T ss_dssp -SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---------------------------------T-SS--
T ss_pred CcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------------------cccccccc
Confidence 55555555 44555555555555555555444443321110 00000122
Q ss_pred cceEEEEEeC-----CC---CEEEEEcCCCcEEEEEccc-CccccccceeeeccCCCCCeEEEEE-cC------------
Q 009373 333 GNTKSLARSH-----TG---DFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAF-EF------------ 390 (536)
Q Consensus 333 ~~i~~l~~~~-----~~---~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~-~~------------ 390 (536)
..++++.|.. |+ -.+++|+..|.+.+|.+.- ...............+.++|..|.. +.
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~ 215 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISA 215 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHH
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhH
Confidence 2455555542 22 3678888888888888752 2111122222222345566655542 10
Q ss_pred ----------CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE-----EecCCEEEEe
Q 009373 391 ----------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV-----DIGADRIVCG 455 (536)
Q Consensus 391 ----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~l~sg 455 (536)
+.++....+..++++...+.+...+.. .. .......++ ...+..|++-
T Consensus 216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-----------~~------~~~~~~~~vv~~~~~~~~~~Lv~l 278 (395)
T PF08596_consen 216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-----------DD------PFLCSSASVVPTISRNGGYCLVCL 278 (395)
T ss_dssp HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE------------SS-------EEEEEEEEEEEE-EEEEEEEEEE
T ss_pred hhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-----------cc------ccccceEEEEeecccCCceEEEEE
Confidence 234444556779999887643221111 00 001111122 1234488899
Q ss_pred cCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcce
Q 009373 456 GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 506 (536)
Q Consensus 456 ~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 506 (536)
..||.|+++.++.-+++....-. ...-.+......++++|..+..
T Consensus 279 ~~~G~i~i~SLP~Lkei~~~~l~------~~~d~~~~~~ssis~~Gdi~~~ 323 (395)
T PF08596_consen 279 FNNGSIRIYSLPSLKEIKSVSLP------PPLDSRRLSSSSISRNGDIFYW 323 (395)
T ss_dssp ETTSEEEEEETTT--EEEEEE-S------S---HHHHTT-EE-TTS-EEEE
T ss_pred ECCCcEEEEECCCchHhhcccCC------CccccccccccEECCCCCEEEE
Confidence 99999999999986665433221 1111233456777888886654
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.52 E-value=0.022 Score=56.13 Aligned_cols=223 Identities=12% Similarity=0.049 Sum_probs=114.2
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEE-Eccc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW-RAVE 229 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw-d~~~ 229 (536)
++.+....-....+.++|+|++++.++ ||.-.|+.....+....-. +.-..+.. .+.+++-..+++|.++ ++..
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~---g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGS---GLSFVWSS-RNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE----SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCc---eeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence 344555555678999999999998854 7777888844443332211 11233444 4557777778889986 3322
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEE
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAS 307 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~ 307 (536)
.. .....+ ...+..|-. |..|...+. +.|.+||..+++.+..+.... |..+. +++++++.
T Consensus 100 ~~------------~k~i~~---~~~~~~If~-G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 100 EV------------VKSIKL---PFSVEKIFG-GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVAL 161 (443)
T ss_dssp -T------------T--------SS-EEEEE--SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEE
T ss_pred cc------------ceEEcC---CcccceEEc-CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEE
Confidence 10 001111 112333322 666665554 489999999999999998654 66665 66889999
Q ss_pred ecCCcEEEEeCCCC-----------cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373 308 TSGSDVYIWDTNSG-----------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 376 (536)
Q Consensus 308 ~~d~~i~i~d~~~~-----------~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~ 376 (536)
.++.++.+++.... .....+. .....|.+.+|..+ .++-.+.. .++. +..+.. ..+..+
T Consensus 162 ~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~----~~i~~l 231 (443)
T PF04053_consen 162 VTKDSIYILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET----GIIAHL 231 (443)
T ss_dssp E-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE----EEEEE-
T ss_pred EeCCeEEEEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc----ceEEEc
Confidence 99888888775443 0222221 12457888888765 44433333 5665 444421 223322
Q ss_pred cCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 377 IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 377 ~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
..++.=+.+.+ +.++....|+.|..+.+..
T Consensus 232 ---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 232 ---DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ---CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 34566666666 7888888888888887753
No 348
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.48 E-value=0.012 Score=60.30 Aligned_cols=226 Identities=16% Similarity=0.170 Sum_probs=119.7
Q ss_pred CCCEEEEEeCCC------cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecC------CeE
Q 009373 209 DKKLLVAGGTDG------FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWD------MTV 275 (536)
Q Consensus 209 ~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d------g~i 275 (536)
.+.+++.|+.++ .+..+|..++. ......+.... .-.+++. ++...++|+.| .++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-----------w~~~a~m~~~r-~~~~~~~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNE-----------WSSLAPMPSPR-CRVGVAVLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCc-----------EeecCCCCccc-ccccEEEECCEEEEEccccCCCcccceE
Confidence 355667777663 57777776652 11122222222 2334444 77778889888 357
Q ss_pred EEEeCCCceEeEeee--ccccEEEEe-ecCCEEEEec-CC-----cEEEEeCCCCcEEEEEccccccceEEEE-EeCCCC
Q 009373 276 RVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVASTS-GS-----DVYIWDTNSGCLLTVVNGAHVGNTKSLA-RSHTGD 345 (536)
Q Consensus 276 ~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~~~-d~-----~i~i~d~~~~~~~~~~~~~~~~~i~~l~-~~~~~~ 345 (536)
..||..+.+-...-. ....-.+++ .+|.+.++|+ || ++-.||..+.+.-..-. ......... ..-+|.
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGK 429 (571)
T ss_pred EEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCE
Confidence 788887766333211 111112233 6777777777 64 48889988865432221 111111111 122577
Q ss_pred EEEEEcCCC------cEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCc-----EEEEECCcccccC
Q 009373 346 FLFTGGEDG------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGK-----LSLIDVRKLLRSG 414 (536)
Q Consensus 346 ~l~tg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~ 414 (536)
+.++||.++ ++..||..++. +..+..+..-........+++...+.||.|+. |..||..+.+-.
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~----W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~- 504 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNT----WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT- 504 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCc----eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCcee-
Confidence 888888654 46788877763 12233332222333344456677777887763 677877653111
Q ss_pred CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCe-----EEEEeCCch
Q 009373 415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGI-----VRIWNFSQA 469 (536)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~-----i~vW~~~~~ 469 (536)
.. ..+......+-....++...+.||.||. |..||..++
T Consensus 505 ------------~v----~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 505 ------------MV----APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ------------Ec----ccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 00 0011122223334455668889998876 455655543
No 349
>PHA02713 hypothetical protein; Provisional
Probab=97.46 E-value=0.018 Score=59.26 Aligned_cols=188 Identities=9% Similarity=-0.030 Sum_probs=95.5
Q ss_pred EeCCEEEEEecC------CeEEEEeCCCceEeEee--ec-cccEEEEeecCCEEEEec-CC-----cEEEEeCCCCcEEE
Q 009373 261 LDLTRIYSGSWD------MTVRVWDRALLKCLKVL--RH-SDWVYGLAPHDTTVASTS-GS-----DVYIWDTNSGCLLT 325 (536)
Q Consensus 261 ~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~--~~-~~~v~~~~~~~~~l~~~~-d~-----~i~i~d~~~~~~~~ 325 (536)
.++..++.|+.+ ..+..||..+..-...- .. .........++++.+.|+ ++ ++..||..+++...
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 366777777754 34778888766432211 11 112223336777777776 42 48889998775433
Q ss_pred EEccccccceEEEEEeCCCCEEEEEcCCC-----------------------cEEEEEcccCccccccceeeeccCCCCC
Q 009373 326 VVNGAHVGNTKSLARSHTGDFLFTGGEDG-----------------------AIHMYEIINDCTEANVLLVATWIPHTGP 382 (536)
Q Consensus 326 ~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 382 (536)
.-.-.....-.+++ .-+|.+.+.|+.++ .+..||..+.. +..+..+......
T Consensus 382 ~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~----W~~v~~m~~~r~~ 456 (557)
T PHA02713 382 LPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI----WETLPNFWTGTIR 456 (557)
T ss_pred CCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe----EeecCCCCccccc
Confidence 11101111111121 22577777787653 47778876652 1222222222222
Q ss_pred eEEEEEcCCeEEEEeCCC------cEEEEECCc-ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEe
Q 009373 383 VNSLAFEFPWLVSAAGDG------KLSLIDVRK-LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG 455 (536)
Q Consensus 383 v~~l~~~~~~l~s~s~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 455 (536)
...+.+.+...+.|+.++ .+..||..+ .. +. ...+ +.......-....++...+.|
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~-----------~~~~----m~~~r~~~~~~~~~~~iyv~G 519 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WE-----------LITT----TESRLSALHTILHDNTIMMLH 519 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC--ee-----------Eccc----cCcccccceeEEECCEEEEEe
Confidence 223445566666666542 356788765 21 11 0011 111112223344567788999
Q ss_pred cCCC--eEEEEeCCchh
Q 009373 456 GEEG--IVRIWNFSQAF 470 (536)
Q Consensus 456 ~~Dg--~i~vW~~~~~~ 470 (536)
|.|| .+..||+.+++
T Consensus 520 g~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 520 CYESYMLQDTFNVYTYE 536 (557)
T ss_pred eecceeehhhcCccccc
Confidence 9998 66667766643
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.44 E-value=0.014 Score=58.75 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=85.6
Q ss_pred ecCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-------------------------
Q 009373 300 PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE------------------------- 352 (536)
Q Consensus 300 ~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~------------------------- 352 (536)
++|+.+...+ .+.+.+.|..+.+...++. -.+....+.++|+|+++++.+.
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 4555554333 3567777887776666653 2234456677777777766641
Q ss_pred ---------------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEE-EeCCCcEEEEECCcccccC
Q 009373 353 ---------------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS-AAGDGKLSLIDVRKLLRSG 414 (536)
Q Consensus 353 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-~s~dg~i~vwd~~~~~~~~ 414 (536)
++.|.+.|.++.... . ..+.....-......++++| .++++ +..+.+|.|.|+.+....+
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~-~-~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANA-G-SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccC-C-cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 233555554440000 0 11122222334556778876 55554 4558999999998865432
Q ss_pred CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373 415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA 469 (536)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~ 469 (536)
.-...-......+ ..-|-...-+.++..+....|---|..|..||+...
T Consensus 358 ~~~~~~~~~vvae------vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 358 DGKIKPRDAVVAE------PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred hccCCccceEEEe------eccCCCcceEEECCCCCEEEeEeecceeEEEehHHH
Confidence 1110000000000 001222223455555568888888999999999874
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0014 Score=66.27 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=80.8
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEECCCCceeeee-CCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373 162 LTVFVLASAKLLFTSGY----DSIVRMWHLEDGFSIASS-KPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 236 (536)
Q Consensus 162 ~~v~~~~~~~~l~sgs~----dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 236 (536)
+-.+|+|...+++.++. .|.|.||- ++|++.... .+.....+|++|..-.|+.|-.-|.+.+|...+.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e----- 92 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE----- 92 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-----
Confidence 34569999999988864 58888885 566644332 22223347778888899999999999999876542
Q ss_pred ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC
Q 009373 237 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL 282 (536)
Q Consensus 237 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~ 282 (536)
.......|..+|..+.| +|+.++++..-|.|.+|....
T Consensus 93 --------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 93 --------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred --------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 22334469999999999 889999999999999998763
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.43 E-value=0.11 Score=48.53 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=138.7
Q ss_pred CcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCccceecccCcccccceEEe
Q 009373 180 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 249 (536)
Q Consensus 180 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 249 (536)
+.+.|+|.++++.+..+...-..-..++|+++.+++++ ..-.|.+||..+-.... ++.-... +.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~-EI~iP~k--~R~-~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG-EIEIPPK--PRA-Q 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE-EEEETTS---B---
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc-eEecCCc--chh-e
Confidence 47999999999888777655455566889999888753 34568999987753211 0000000 000 0
Q ss_pred eCCccCEEEEEEeCCEEEEE--ecCCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEecCCcEEEEeCC-CCcEEE
Q 009373 250 WEHEGPITSLALDLTRIYSG--SWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTN-SGCLLT 325 (536)
Q Consensus 250 ~~h~~~v~~l~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~-~~~~~~ 325 (536)
.........+.-++++++.. +--..|.|-|+...+.+..+..++...-.- .+..+...|.||++.-..+. .|+...
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 01111222333356655443 334567778888888877777554333332 34456677779999888887 455442
Q ss_pred EEc---cccccc-eEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC----------CCCCeEEEEEcC-
Q 009373 326 VVN---GAHVGN-TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP----------HTGPVNSLAFEF- 390 (536)
Q Consensus 326 ~~~---~~~~~~-i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~~- 390 (536)
+.. .....+ +..-++...+..++--+.+|.|+--|+...... ....+.. -.+.-.-+++++
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~----~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK----FGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE----EEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc----ccCcccccCccccccCcCCcceeeeeeccc
Confidence 221 111111 222334445555555788999998888776321 1111110 011223355543
Q ss_pred -CeEEEEe---C-----CC--cEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEE-EecC
Q 009373 391 -PWLVSAA---G-----DG--KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIV-CGGE 457 (536)
Q Consensus 391 -~~l~s~s---~-----dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~-sg~~ 457 (536)
+.|+.-- . |+ .|-++|+.+.++.. ++. -.+......++-+.. +|. ....
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~---------Ri~---------l~~~~~Si~Vsqd~~P~L~~~~~~ 310 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA---------RIP---------LEHPIDSIAVSQDDKPLLYALSAG 310 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE---------EEE---------EEEEESEEEEESSSS-EEEEEETT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE---------EEe---------CCCccceEEEccCCCcEEEEEcCC
Confidence 3333321 1 12 35555666543221 111 112222334443344 554 4567
Q ss_pred CCeEEEEeCCchhhHHHHH
Q 009373 458 EGIVRIWNFSQAFEIERRA 476 (536)
Q Consensus 458 Dg~i~vW~~~~~~~~~~~~ 476 (536)
++.+.+||..+|+.+.+..
T Consensus 311 ~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 311 DGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTEEEEEETTT--EEEEE-
T ss_pred CCeEEEEeCcCCcEEeehh
Confidence 8999999999998776543
No 353
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.085 Score=47.35 Aligned_cols=276 Identities=12% Similarity=0.051 Sum_probs=166.6
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee--CCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 236 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 236 (536)
+.+..+.++ ++++..+..+.-++|.|+.+....... -...+...++.-.|++..++..|.-+.+.|+.+...
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss---- 160 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS---- 160 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC----
Confidence 344555665 667788888888999999876543322 223356677788899999999777778889876532
Q ss_pred ccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeE---eeeccccEEEEeecCCEE-EEecCCc
Q 009373 237 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK---VLRHSDWVYGLAPHDTTV-ASTSGSD 312 (536)
Q Consensus 237 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~l-~~~~d~~ 312 (536)
......+......-..++..|++-+.+..|+-+.+-|+....... .......+.++.+.+++. ++..+..
T Consensus 161 ------P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 161 ------PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred ------ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc
Confidence 222333334445557788899999999999999999987654433 333555778888554444 4444777
Q ss_pred EEEEeCCCCcEEEEEccccccceEEE-EEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCC
Q 009373 313 VYIWDTNSGCLLTVVNGAHVGNTKSL-ARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP 391 (536)
Q Consensus 313 i~i~d~~~~~~~~~~~~~~~~~i~~l-~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 391 (536)
+.+-|....+....+-.-....+.++ .+.-.+++......+.-+.+-|+.++..+ .....+......-..+...+.
T Consensus 235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp---fl~ss~~t~g~~a~gi~ay~~ 311 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP---FLSSSLDTAGYQAAGIRAYGN 311 (370)
T ss_pred eEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC---chhccccCCCccccceEEecC
Confidence 88888877765544422122222222 22224666666666767778888776321 222222222334456666777
Q ss_pred eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373 392 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 392 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~ 467 (536)
++..+..+ ...+-+....+....... .... ....++..+.+.+-+...++-+.+|+..
T Consensus 312 y~yiadkn-~g~vV~~s~~s~m~~~~g--------------~~ti---~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 312 YNYIADKN-TGAVVDASPPSMMDKRPG--------------RPTI---GQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred eeEeccCC-ceEEEeCCChhhcccccC--------------cceE---eeecceEEEeeEEEEeecCCCEEEEEec
Confidence 77777666 555666554322211100 0001 1122333445578888889999999853
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.41 E-value=0.077 Score=53.60 Aligned_cols=179 Identities=12% Similarity=-0.094 Sum_probs=107.9
Q ss_pred EecCCCEEE-EEeCCCcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEEEEeCCC----cEEEEEcccCccceecccC
Q 009373 166 VLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDG----FIHCWRAVEVLPHLFDISG 239 (536)
Q Consensus 166 ~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~~ 239 (536)
+.|||+.+. +.-+.+.+.+.|.++.+...++.-. ......+.++++++++.+.+. ++..-+..+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e---------- 269 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE---------- 269 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc----------
Confidence 445665443 3334577888888887766655332 233556778888888776432 122211110
Q ss_pred cccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCC-----ceEeEeeeccccEE--EEeecCCEEEEec--C
Q 009373 240 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRAL-----LKCLKVLRHSDWVY--GLAPHDTTVASTS--G 310 (536)
Q Consensus 240 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~v~--~~~~~~~~l~~~~--d 310 (536)
......+. -..+..+.-++++... .++.|.+.|..+ .+....+.-..... .++|+|+++++++ +
T Consensus 270 ---~d~~vvfn--i~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 270 ---RDWVVVFN--IARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred ---CceEEEEc--hHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC
Confidence 00000000 0001111115555554 367899999988 45666666444444 4559999999888 7
Q ss_pred CcEEEEeCCCCcE------------EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEccc
Q 009373 311 SDVYIWDTNSGCL------------LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 363 (536)
Q Consensus 311 ~~i~i~d~~~~~~------------~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~ 363 (536)
.++.|+|+.+.+. ..... -.......+|.++|....+-.-|..|..|++..
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9999999988653 33332 233445678999998888888899999999876
No 355
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.40 E-value=0.00065 Score=60.43 Aligned_cols=238 Identities=13% Similarity=0.169 Sum_probs=121.6
Q ss_pred CccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce-Ee----Eeee-c------------cccEEEEe---e--cCCEEE
Q 009373 252 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK-CL----KVLR-H------------SDWVYGLA---P--HDTTVA 306 (536)
Q Consensus 252 h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~-~~----~~~~-~------------~~~v~~~~---~--~~~~l~ 306 (536)
....|+++.| .|.++++|...|.|.+|.-.... |. ..++ | ...|..+. + ...+|+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467889999 56899999999999999754322 11 1121 2 22344444 2 345788
Q ss_pred EecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee-ccCCCCCeEE
Q 009373 307 STSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNS 385 (536)
Q Consensus 307 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~ 385 (536)
++.|.+|++|.+........-.......+ -+|.+.-+.+.. .+++=.+..........+.+. -..|...|++
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~~---~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTSTK---ELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccccccc----ccccCCCcCCHH---HhhcccccccceEEEeccceeccccceeEeee
Confidence 88899999999876532221111011111 111111010000 000000000000000011111 2578889999
Q ss_pred EEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeE
Q 009373 386 LAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIV 461 (536)
Q Consensus 386 l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i 461 (536)
+.|.. .-.+..+.|=.|.+|++.-....+.. ..+.+ ..+..-...+++..|++. .+.-.+..|.|
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnI---------VDiKP--~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNI---------VDIKP--HNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEE---------EeccC--ccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 99975 33344456778999998753222111 11111 001112233455555554 56666778999
Q ss_pred EEEeCCchhhHHHHHH----hhhc--ccchhHHHhhhhccccccCCCCccee
Q 009373 462 RIWNFSQAFEIERRAR----ALRG--IRLENRMRRRKLQTEMSSKGGRTDQC 507 (536)
Q Consensus 462 ~vW~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~ 507 (536)
++-|+.....-..... ..-+ ..-....-+.+..+.|+++|+.|++-
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 9999984332211111 1111 11233455667889999999999874
No 356
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.37 E-value=0.11 Score=55.64 Aligned_cols=190 Identities=16% Similarity=0.114 Sum_probs=117.1
Q ss_pred ceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEE
Q 009373 201 CTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVR 276 (536)
Q Consensus 201 ~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~ 276 (536)
..|.++. .+++.++.+..+|.|.+-|.++.. ......-.+.|.+++| |.+.++..+.++++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--------------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--------------LEIVGNVDNGISAASWSPDEELLALITGRQTLL 134 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc--------------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence 4666666 678889999999999999876642 2223334678999999 777888888878876
Q ss_pred EEeC----CCceEe-------------------Eeee-------------c---------cccEEEEe--ecCCEEEEe-
Q 009373 277 VWDR----ALLKCL-------------------KVLR-------------H---------SDWVYGLA--PHDTTVAST- 308 (536)
Q Consensus 277 iwd~----~~~~~~-------------------~~~~-------------~---------~~~v~~~~--~~~~~l~~~- 308 (536)
+-+- -..+.+ ..+. + .+.=++++ .+|.++++.
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 6431 111111 0111 0 00112244 678888873
Q ss_pred ----cC-CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc---CCCcEEEEEcccCccccccceeeeccCCC
Q 009373 309 ----SG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATWIPHT 380 (536)
Q Consensus 309 ----~d-~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 380 (536)
.+ ..|++||-+ |..-. ......+.-.+++|-|.|..+++-. .|+.|.+|.-+.-.. . .....+....
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g--~f~l~~p~de 289 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-G--EFVLPFPLDE 289 (1265)
T ss_pred EeccCCceeEEEeccc-chhhc-ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-c--ccccCCcccc
Confidence 34 679999987 43322 2223444556899999999988753 456799998543311 1 1122233334
Q ss_pred CCeEEEEEcC--CeEEE---EeCCCcEEEEECCc
Q 009373 381 GPVNSLAFEF--PWLVS---AAGDGKLSLIDVRK 409 (536)
Q Consensus 381 ~~v~~l~~~~--~~l~s---~s~dg~i~vwd~~~ 409 (536)
.+|..++|+. +.|++ ......|++|-+.+
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 4589999964 56665 44445599998875
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.36 E-value=7.3e-05 Score=72.86 Aligned_cols=194 Identities=13% Similarity=0.148 Sum_probs=118.0
Q ss_pred ccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEe-Eee--eccccEEEEe---ecCCEEEEec-----CCcEEEEe
Q 009373 253 EGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL-KVL--RHSDWVYGLA---PHDTTVASTS-----GSDVYIWD 317 (536)
Q Consensus 253 ~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~-~~~--~~~~~v~~~~---~~~~~l~~~~-----d~~i~i~d 317 (536)
...+.|+++ +...++.|..+|.|.+-..+..... ..+ .+....++++ -+.+.|++|- +..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345666665 2246788999999999877654333 222 2566677776 3456777775 35699999
Q ss_pred CCCC--cEE--EEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc---C
Q 009373 318 TNSG--CLL--TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---F 390 (536)
Q Consensus 318 ~~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~ 390 (536)
+.++ .+. ..+..+......+++|..+.+++.+|.....+.++|++... .....-.+..+..+..+ +
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-------~~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-------DSVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-------hhhhhhhhhhcccceecCCCC
Confidence 9887 222 22222234456689999889999999999999999998542 11111223345555555 4
Q ss_pred CeEEEEeCCCcEEEEE-CCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEec-CCCeEEEEe
Q 009373 391 PWLVSAAGDGKLSLID-VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGG-EEGIVRIWN 465 (536)
Q Consensus 391 ~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~-~Dg~i~vW~ 465 (536)
+++++-. ||.|.+|| .++.+.+....... -......++.+++.+. .+++.. ..++|++++
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~--------------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRN--------------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhC--------------CCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 7887776 99999999 44432221111000 0001123556666554 455444 457889998
Q ss_pred CCc
Q 009373 466 FSQ 468 (536)
Q Consensus 466 ~~~ 468 (536)
+..
T Consensus 274 i~~ 276 (783)
T KOG1008|consen 274 ICV 276 (783)
T ss_pred ccc
Confidence 763
No 358
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00013 Score=63.37 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=60.6
Q ss_pred cccccCCcHHHHHHHhcCC-ChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhh
Q 009373 61 RSTITDLPPALISEILNCL-DPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVER 138 (536)
Q Consensus 61 ~~~l~~Lp~ei~~~I~~~L-~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~ 138 (536)
-..+.+||.|+.+.|+..| |..||..++||--..+.+.++..+||+++.-+|....-......+......||.+|...
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L 277 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQL 277 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHH
Confidence 3458899999999999766 79999999999999999999999999987766753332223333444457899998763
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.0011 Score=65.70 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=83.7
Q ss_pred EEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373 295 VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373 (536)
Q Consensus 295 v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 373 (536)
.+|++..+++++.|+ -|.+++|+-..++....-..+..+.+..+..+++..++|+|+..|.|.++-+........ ..+
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~-~~~ 116 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL-DYV 116 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc-eee
Confidence 356667777777777 577888877766655444344556677778899999999999999999999887533222 222
Q ss_pred ee-ccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373 374 AT-WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 374 ~~-~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
.. -..|...|+++.|++ ..+++|..-|+|..-.+.+
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22 234788999999986 6899999999999988876
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.28 E-value=0.0058 Score=63.68 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=97.1
Q ss_pred eCCCcEEEEECCCCceeeeeCCCCc-eEEEEecC-------CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373 177 GYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAAD-------KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR 248 (536)
Q Consensus 177 s~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~-------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 248 (536)
.....|+-.|++.|+.+..+..+.. ++..+.|+ +...+.|-.+..+..||.+-....+. .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-------~~~~k- 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-------DSQSK- 572 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-------ecccc-
Confidence 4567899999999999999987764 48888764 34567888889999999864321110 00011
Q ss_pred eeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEecCCcEEEEeCC
Q 009373 249 LWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTN 319 (536)
Q Consensus 249 ~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~ 319 (536)
.........|++- ..++|+.|+.+|.||+||--..+....+. ...+|..|. .+|++++++++..+.+++..
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 1133456777777 66899999999999999954333333343 578898887 89999999999999998863
No 361
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.27 E-value=0.16 Score=47.35 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=112.7
Q ss_pred EEEecCCCEEEEEe--CCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcc
Q 009373 164 VFVLASAKLLFTSG--YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE 241 (536)
Q Consensus 164 v~~~~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 241 (536)
.+++.|+++++... --..|.|-|+..++.+..+...++...--. .++.+.+-+.||++.-..+......
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~-------- 170 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKE-------- 170 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSE--------
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-CCCceEEEecCCceEEEEECCCCCE--------
Confidence 45677888766543 345688888888888877765544322212 2346888899999988888643211
Q ss_pred cccceEEeeCCccCEE-EEEE--eCCEEEEEecCCeEEEEeCCCceEe--Eeee-------------ccccEEEEee-cC
Q 009373 242 KQNTQFRLWEHEGPIT-SLAL--DLTRIYSGSWDMTVRVWDRALLKCL--KVLR-------------HSDWVYGLAP-HD 302 (536)
Q Consensus 242 ~~~~~~~~~~h~~~v~-~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-------------~~~~v~~~~~-~~ 302 (536)
.......+..-..++. .-++ .++.++.-+.+|.|+--|+...... ..+. ..-.+.++.+ .+
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 1111111222223332 2222 3456777888899988887654322 1221 1113455553 34
Q ss_pred CEEEEec---CC-------cEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEE-EcCCCcEEEEEcccC
Q 009373 303 TTVASTS---GS-------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFT-GGEDGAIHMYEIIND 364 (536)
Q Consensus 303 ~~l~~~~---d~-------~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~t-g~~dg~i~iwd~~~~ 364 (536)
++++.-. ++ .|-++|+.+++.+.++. -..++.++..+.+.+ +|++ ...++.+.+||..++
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 4443322 12 38899999999999986 345677899998775 5544 456899999999998
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.17 E-value=0.054 Score=41.33 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=63.6
Q ss_pred EEEEEEec-CC---CEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373 161 VLTVFVLA-SA---KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 161 V~~v~~~~-~~---~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 235 (536)
|++|++.. ++ +.|+.||.|..||+|+-+ +.+..+.. ...+..+. ..+..++.|..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc------
Confidence 66777664 22 589999999999999944 44444443 34455555 4557899999999999997422
Q ss_pred cccCcccccceEEeeCCccCEEEEEE-eC-----CEEEEEecCCeEE
Q 009373 236 DISGSEKQNTQFRLWEHEGPITSLAL-DL-----TRIYSGSWDMTVR 276 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~-----~~l~s~s~dg~i~ 276 (536)
....... ...++++++ |- ..|++|-.+|.|-
T Consensus 73 ---------RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ---------RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---------eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222222 233666666 22 2688888888764
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.15 E-value=0.011 Score=61.65 Aligned_cols=136 Identities=11% Similarity=0.087 Sum_probs=88.0
Q ss_pred CEEEEE-eCCCcEEEEEcccCccceecccCcccccceEEeeCCcc-CEEEEEE-------eCCEEEEEecCCeEEEEeCC
Q 009373 211 KLLVAG-GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG-PITSLAL-------DLTRIYSGSWDMTVRVWDRA 281 (536)
Q Consensus 211 ~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~-------~~~~l~s~s~dg~i~iwd~~ 281 (536)
++|+.. .....|+-.|++.|+ .+.....|.. +|..++. .+...+.|-.+..+..||.+
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GK-------------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGK-------------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred ceEeecCCCCCceEEEecCCCc-------------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence 344433 345778888887764 3444444443 3677765 23456778888999999988
Q ss_pred Cce--EeE----eeeccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC
Q 009373 282 LLK--CLK----VLRHSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 353 (536)
Q Consensus 282 ~~~--~~~----~~~~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d 353 (536)
-.. ++. .+.......|++ ...-+||+|+ +|.||+||- .|+.-.+...+...+|..|..+.||++|++.+ +
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~ 638 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-K 638 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-c
Confidence 532 221 122444556666 3334555555 899999994 44444444446788999999999999987765 4
Q ss_pred CcEEEEEc
Q 009373 354 GAIHMYEI 361 (536)
Q Consensus 354 g~i~iwd~ 361 (536)
..+.+++.
T Consensus 639 tyLlLi~t 646 (794)
T PF08553_consen 639 TYLLLIDT 646 (794)
T ss_pred ceEEEEEE
Confidence 56777775
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.05 E-value=0.0018 Score=38.70 Aligned_cols=37 Identities=32% Similarity=0.653 Sum_probs=31.5
Q ss_pred EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373 323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 323 ~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd 360 (536)
....+. .|...|.++.|++.+..+++++.|+.+++|+
T Consensus 4 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 444453 5888999999999999999999999999996
No 365
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.017 Score=58.80 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=58.2
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcc
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~ 228 (536)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..++ +.++++|+.++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999999999999999999999988877666666676655 5667999999999999999999875
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.88 E-value=0.31 Score=43.83 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=107.5
Q ss_pred EEEEEEecCCCEEEEEeCCC--cEEEEECCCCceeeeeCCCC-ceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373 161 VLTVFVLASAKLLFTSGYDS--IVRMWHLEDGFSIASSKPLG-CTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFD 236 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg--~v~iwd~~~~~~~~~~~~~~-~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 236 (536)
...+.|..+|.++-+.+.-| .|+.+|+.+|+......-.. .---.+. .++....-.=.++...+||..+-+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~----- 121 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK----- 121 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE-----
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce-----
Confidence 34677767788888887766 78999999998765542211 1111122 233444445567888888876532
Q ss_pred ccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEE---Ee-ecCCEEEEec
Q 009373 237 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYG---LA-PHDTTVASTS 309 (536)
Q Consensus 237 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~---~~-~~~~~l~~~~ 309 (536)
...++ ...+.=..++.+++.|+.......+.++|..+.+....+. ...+|.. +. .+|...+-.-
T Consensus 122 --------~~~~~-~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW 192 (264)
T PF05096_consen 122 --------KIGTF-PYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVW 192 (264)
T ss_dssp --------EEEEE-E-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEET
T ss_pred --------EEEEE-ecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeC
Confidence 22222 2234556777888888888888899999999888877776 3334443 33 4454444444
Q ss_pred -CCcEEEEeCCCCcEEEEEcc--------------ccccceEEEEEeCCCCEEEEEcC
Q 009373 310 -GSDVYIWDTNSGCLLTVVNG--------------AHVGNTKSLARSHTGDFLFTGGE 352 (536)
Q Consensus 310 -d~~i~i~d~~~~~~~~~~~~--------------~~~~~i~~l~~~~~~~~l~tg~~ 352 (536)
...|...|..+|+....+.- ....-.+.++++|..+.|...+.
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 67899999999998877631 01345889999998765554443
No 367
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.88 E-value=0.32 Score=43.89 Aligned_cols=200 Identities=12% Similarity=0.096 Sum_probs=101.9
Q ss_pred eeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCC---ceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373 152 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVAADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sg~~dg~i~vwd~ 227 (536)
+.+.+-.+.+..++|+|+.+ ++++....+.|...+. +|+.++.+.-.+ ..-.++.-++.++++.-.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 46677777899999999755 6667777888888886 477777663322 223333355556665556899999988
Q ss_pred ccCccceecccCcccccceEE--e-eCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCC---ceEeEeee---------
Q 009373 228 VEVLPHLFDISGSEKQNTQFR--L-WEHEGPITSLALDL--TRIYSGSWDMTVRVWDRAL---LKCLKVLR--------- 290 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~--~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~---~~~~~~~~--------- 290 (536)
......+.. ....... + ..++..+-.++|+. +.|+.+-......+|.+.. ........
T Consensus 94 ~~~~~~~~~-----~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 94 DDDTTSLDR-----ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp ----TT--E-----EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred eccccccch-----hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 443211100 0000111 1 13556789999944 6777777777777776643 22222111
Q ss_pred ccccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcEEEEEc--ccc------ccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373 291 HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVN--GAH------VGNTKSLARSHTGDFLFTGGEDGAIHM 358 (536)
Q Consensus 291 ~~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~--~~~------~~~i~~l~~~~~~~~l~tg~~dg~i~i 358 (536)
....+.+++ | .+++++.+. +..+..+| .+|+.+..+. .+. -.+.-.|+|.++|.+.+++ +-+..++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 112234444 3 355666655 67788899 6777666553 211 1367889999998755554 5555554
Q ss_pred E
Q 009373 359 Y 359 (536)
Q Consensus 359 w 359 (536)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 368
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.83 E-value=0.00056 Score=63.96 Aligned_cols=44 Identities=27% Similarity=0.533 Sum_probs=41.5
Q ss_pred ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHH
Q 009373 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107 (536)
Q Consensus 64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~ 107 (536)
...||+|+++++|++||..+|++++++|+.|+.++.|..-|..+
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~i 115 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHI 115 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceee
Confidence 45699999999999999999999999999999999999999875
No 369
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.75 E-value=0.4 Score=43.19 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=101.3
Q ss_pred cCCCEEEEEeCCC--cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEE-EEecCCeEEEEeCCCce
Q 009373 208 ADKKLLVAGGTDG--FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY-SGSWDMTVRVWDRALLK 284 (536)
Q Consensus 208 ~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~dg~i~iwd~~~~~ 284 (536)
.++.++-+.+.-| .|+.+|+.+++.. ....+ ...---..++.-++.|+ -.=.++...+||..+.+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~-----------~~~~l-~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVL-----------QSVPL-PPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEE-----------EEEE--TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEE-----------EEEEC-CccccceeEEEECCEEEEEEecCCeEEEEccccce
Confidence 5666777777666 6888998887421 11111 11112233444344444 34467889999999999
Q ss_pred EeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccc----cccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373 285 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMY 359 (536)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~tg~~dg~i~iw 359 (536)
.+.++.....=..++.++..|+.+. ...++++|..+.+....+.-. .-..++-+.+- +|...|=.-....|...
T Consensus 122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 9999987777778887777766666 688999999988777666421 12245566665 56666666666778888
Q ss_pred EcccCccccccce--e-e------eccCCCCCeEEEEEcC---CeEEEE
Q 009373 360 EIINDCTEANVLL--V-A------TWIPHTGPVNSLAFEF---PWLVSA 396 (536)
Q Consensus 360 d~~~~~~~~~~~~--~-~------~~~~h~~~v~~l~~~~---~~l~s~ 396 (536)
|..++........ + . ...+.....+.||++| .+++||
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8877743221100 0 0 0011246789999976 355555
No 370
>PHA03098 kelch-like protein; Provisional
Probab=96.70 E-value=0.2 Score=51.77 Aligned_cols=184 Identities=11% Similarity=0.038 Sum_probs=92.4
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceeee--eCCCCceEEEEecCCCEEEEEeCC-----CcEEEEEcccCcccee
Q 009373 169 SAKLLFTSGYDS------IVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTD-----GFIHCWRAVEVLPHLF 235 (536)
Q Consensus 169 ~~~~l~sgs~dg------~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~ 235 (536)
++.+++.|+.++ .+..||..+.+-... +............++..++.||.+ ..+..||..++...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-- 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-- 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee--
Confidence 466777777543 577788776643221 111111222334577788888875 34667776654311
Q ss_pred cccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC------CeEEEEeCCCceEeEeee---ccccEEEEeecCCEEE
Q 009373 236 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD------MTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVA 306 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~ 306 (536)
....+............++..++.|+.+ ..+..||..+.+-...-. ......++..++.+++
T Consensus 372 ---------~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv 442 (534)
T PHA03098 372 ---------EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV 442 (534)
T ss_pred ---------eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE
Confidence 1111111111112223466666777632 457889987654332211 1111122335666666
Q ss_pred Eec-C--------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccC
Q 009373 307 STS-G--------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND 364 (536)
Q Consensus 307 ~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~ 364 (536)
.|+ + ..+.+||..+++....-.......-.+++. -++.+++.|+.+ ..+.+||+.+.
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 665 2 128889998876443211111111111222 256777777764 46888887765
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.69 E-value=1.1 Score=47.37 Aligned_cols=303 Identities=11% Similarity=0.088 Sum_probs=153.6
Q ss_pred cccEEEEEEecCC------CEEEEEeCCCcEEEEEC-CCCceeeee--CCC--CceE--EEEecCCCEEEEEeCCCcEEE
Q 009373 158 TEAVLTVFVLASA------KLLFTSGYDSIVRMWHL-EDGFSIASS--KPL--GCTI--RAVAADKKLLVAGGTDGFIHC 224 (536)
Q Consensus 158 ~~~V~~v~~~~~~------~~l~sgs~dg~v~iwd~-~~~~~~~~~--~~~--~~~v--~~~~~~~~~l~sg~~dg~i~v 224 (536)
...|.|+.++|-| ++++.|.++..+.+--. .+...+... .+. .-.+ .++.-+..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4578999999742 38999998877665543 333322222 111 1122 334456889999999999988
Q ss_pred EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe-
Q 009373 225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA- 299 (536)
Q Consensus 225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~- 299 (536)
+.+....-...+ .....-...++.--.| .+..-+.+..|+-..+|-.+..-+...+. .-..+..+.
T Consensus 610 fv~d~~tg~lsd---------~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s 680 (1096)
T KOG1897|consen 610 FVLDINTGQLSD---------RKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNS 680 (1096)
T ss_pred EEEEcccceEcc---------ccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhccccc
Confidence 766543211111 1101112334444444 33333444456666666554333333332 222333333
Q ss_pred -ecCCEEEEecCCcEEEEeCCCCc--EEEEEccccccceEEEEEeCCCCEEEEEcC-----------CC---cEEEEEcc
Q 009373 300 -PHDTTVASTSGSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGDFLFTGGE-----------DG---AIHMYEII 362 (536)
Q Consensus 300 -~~~~~l~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-----------dg---~i~iwd~~ 362 (536)
.-+..++.+..+.+.+.-+..-+ .++++. -......+++.+....+++.+. .. .++++|-.
T Consensus 681 ~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n 758 (1096)
T KOG1897|consen 681 DAYPDSLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN 758 (1096)
T ss_pred ccCCceEEEecCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence 33556777777887777655422 233332 4445667777764444444332 11 24555544
Q ss_pred cCccccccceeeeccCC--CCCeEEEEEc--C-CeEEEEeC----------CCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373 363 NDCTEANVLLVATWIPH--TGPVNSLAFE--F-PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIE 427 (536)
Q Consensus 363 ~~~~~~~~~~~~~~~~h--~~~v~~l~~~--~-~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 427 (536)
+-.. .....+... ...|.+..|. | .+++.|.. .|.|.|+.+....
T Consensus 759 Tf~v----l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~---------------- 818 (1096)
T KOG1897|consen 759 TFEV----LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN---------------- 818 (1096)
T ss_pred ceeE----EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC----------------
Confidence 3310 111111111 1234444563 2 46666653 3556666554411
Q ss_pred eCCCeeeecc--ccccEEEEE-ecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCc
Q 009373 428 VEPPQRMLHG--FECNLLSVD-IGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT 504 (536)
Q Consensus 428 ~~~~~~~~~~--~~~~v~~~~-~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 504 (536)
.....+. -.+.+.++. +++.++|.-+ ..|++|++.++++++...... .....+...-.|..+
T Consensus 819 ---~L~~v~e~~v~Gav~aL~~fngkllA~In--~~vrLye~t~~~eLr~e~~~~----------~~~~aL~l~v~gdeI 883 (1096)
T KOG1897|consen 819 ---SLELVAETVVKGAVYALVEFNGKLLAGIN--QSVRLYEWTTERELRIECNIS----------NPIIALDLQVKGDEI 883 (1096)
T ss_pred ---ceeeeeeeeeccceeehhhhCCeEEEecC--cEEEEEEccccceehhhhccc----------CCeEEEEEEecCcEE
Confidence 1111111 223445544 5666666554 589999999986665444332 223455666666666
Q ss_pred ce
Q 009373 505 DQ 506 (536)
Q Consensus 505 ~~ 506 (536)
++
T Consensus 884 ~V 885 (1096)
T KOG1897|consen 884 AV 885 (1096)
T ss_pred EE
Confidence 66
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.69 E-value=0.78 Score=45.64 Aligned_cols=231 Identities=16% Similarity=0.099 Sum_probs=118.3
Q ss_pred cEEEEEEecCCCEEEEE-eCCC----cEEEEECCCCceeeee-CCCCceEEEEecCCCEEEEEeCCC-----------cE
Q 009373 160 AVLTVFVLASAKLLFTS-GYDS----IVRMWHLEDGFSIASS-KPLGCTIRAVAADKKLLVAGGTDG-----------FI 222 (536)
Q Consensus 160 ~V~~v~~~~~~~~l~sg-s~dg----~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sg~~dg-----------~i 222 (536)
.+....++|+|+++|-+ +..| +++++|+++|+.+... ......-..+.++++.|+....+. .|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 44467899999988854 3334 5999999999776533 222222267778877665554333 36
Q ss_pred EEEEcccCccceecccCcccccceEEeeCCccC--EEEEEE--eCCEEEEEecC----CeEEEEeCCCc-----eEeEee
Q 009373 223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP--ITSLAL--DLTRIYSGSWD----MTVRVWDRALL-----KCLKVL 289 (536)
Q Consensus 223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~--~~~~l~s~s~d----g~i~iwd~~~~-----~~~~~~ 289 (536)
+.|++.++. ......+...... ...+.. ++++++..+.. ..+.+.|+..+ ......
T Consensus 205 ~~~~~gt~~-----------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 205 YRHKLGTPQ-----------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp EEEETTS-G-----------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred EEEECCCCh-----------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 777775542 1112233333322 445555 66776543322 34777788764 233333
Q ss_pred ecc-ccEEEEeecCC-EEEEec----CCcEEEEeCCCCcE---EEEEcccccc--ceEEEEEeCCCCEEEE-EcCCC--c
Q 009373 290 RHS-DWVYGLAPHDT-TVASTS----GSDVYIWDTNSGCL---LTVVNGAHVG--NTKSLARSHTGDFLFT-GGEDG--A 355 (536)
Q Consensus 290 ~~~-~~v~~~~~~~~-~l~~~~----d~~i~i~d~~~~~~---~~~~~~~~~~--~i~~l~~~~~~~~l~t-g~~dg--~ 355 (536)
... +....+...+. +++.+. .+.|.-.++..... ...+. .+.. .+..+.. .+++|+. ...++ .
T Consensus 274 ~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 274 PREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSSR 350 (414)
T ss_dssp ESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred CCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCccE
Confidence 333 33344443344 444443 25677788887652 22332 3444 3444443 4555544 44444 4
Q ss_pred EEEEEcc-cCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeC---CCcEEEEECCcc
Q 009373 356 IHMYEII-NDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAG---DGKLSLIDVRKL 410 (536)
Q Consensus 356 i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~---dg~i~vwd~~~~ 410 (536)
|+++++. .. ........-.+.|..+..++ .+.++.+. =++++.||+.++
T Consensus 351 l~v~~~~~~~------~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 351 LRVYDLDDGK------ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEETT-TE------EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEECCCCc------EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 8888888 33 11111122234455555432 23333332 256778888764
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.021 Score=59.93 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=52.7
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEc
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~ 227 (536)
.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..++.+...+- .++..++++...|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 57899999999999999999999999999999988887766555443332 33446777777776 5654
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.62 E-value=0.34 Score=49.53 Aligned_cols=105 Identities=14% Similarity=0.042 Sum_probs=65.3
Q ss_pred eCCEEEEEecCCeEEEEeCCCceEeEeeeccc--cEE----------EEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEc
Q 009373 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVY----------GLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVN 328 (536)
Q Consensus 262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v~----------~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 328 (536)
.++.++.++.++.|.-.|..+++.+..+.... .+. .+. .+++.++...++.+.-+|..+|+.+-...
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 46778888888999999999999988776321 111 122 23444544459999999999999987764
Q ss_pred cccccceEEEEEeC--CCCEEEEEcC------CCcEEEEEcccCcc
Q 009373 329 GAHVGNTKSLARSH--TGDFLFTGGE------DGAIHMYEIINDCT 366 (536)
Q Consensus 329 ~~~~~~i~~l~~~~--~~~~l~tg~~------dg~i~iwd~~~~~~ 366 (536)
......-..+.-+| .+..++++.. +|.|.-+|..+++.
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 22111001111111 1234555432 68899999988743
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.008 Score=62.84 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=75.7
Q ss_pred ccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373 293 DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 371 (536)
Q Consensus 293 ~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 371 (536)
..+.+.+..+..++.|+ .|.+...|.+..-....-...-.++|++++|+.+|..++.|-.+|.|.+||+..+ +
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~------k 163 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA------K 163 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC------c
Confidence 34444555566667776 6888888887642211111234678999999999999999999999999999988 5
Q ss_pred eeeeccCCCCCeEEEEEc----C-CeEEEEeCCCcEEEEEC
Q 009373 372 LVATWIPHTGPVNSLAFE----F-PWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 372 ~~~~~~~h~~~v~~l~~~----~-~~l~s~s~dg~i~vwd~ 407 (536)
.++.+..|..+.+++-+. . ..++++..-|. +|.+
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 667777777777666653 2 45777777776 5554
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.52 E-value=0.0091 Score=37.82 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=29.9
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS 192 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~ 192 (536)
...|.+++|+|..+++|.|+.||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5544
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=1 Score=44.16 Aligned_cols=188 Identities=18% Similarity=0.184 Sum_probs=124.8
Q ss_pred EEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEEEeC---CCcEEEEEcccCccceec
Q 009373 162 LTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFD 236 (536)
Q Consensus 162 ~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~ 236 (536)
..++.++.++ ..++...++.|.+.|..+........ +....-..+.++++.++++.. ++++.+.|..+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----- 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----- 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-----
Confidence 4567777777 45555556899999988777766653 334455677788887777665 6788888876653
Q ss_pred ccCcccccceEEeeCCccCEEEEEE--eCCEEEEE-ecCCeEEEEeCCCceEeE-e----ee--ccccEEEEeecCCEEE
Q 009373 237 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG-SWDMTVRVWDRALLKCLK-V----LR--HSDWVYGLAPHDTTVA 306 (536)
Q Consensus 237 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~-s~dg~i~iwd~~~~~~~~-~----~~--~~~~v~~~~~~~~~l~ 306 (536)
.......-..+ ..+++ +++.++.+ ..++.|.+.|..+..... . .. .......+.+++..+.
T Consensus 152 --------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 152 --------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred --------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEE
Confidence 22222222233 66666 66755544 478999999987766553 1 22 2233455668888666
Q ss_pred Eec--C--CcEEEEeCCCCcEEEE-EccccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccC
Q 009373 307 STS--G--SDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIIND 364 (536)
Q Consensus 307 ~~~--d--~~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~ 364 (536)
... + +.+...|..++..... ...+.. ....+..+|+|..+.+... .+.+.+.|..+.
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 655 2 4899999998877765 222222 5667889999998887744 488999998776
No 378
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.41 E-value=1.1 Score=44.19 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=74.7
Q ss_pred cCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee---c-----cccEEEEe-ecCCEEEEecCCcEEEEeCCCCc-
Q 009373 254 GPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR---H-----SDWVYGLA-PHDTTVASTSGSDVYIWDTNSGC- 322 (536)
Q Consensus 254 ~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~-----~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~- 322 (536)
+.|.++.| +...|+....||.+++||+.... ...+. . ...+.... .+.-.++...++.+.+.+-....
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~ 159 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPV 159 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccc
Confidence 78999999 66788899999999999986333 11111 1 11122222 21223344445555444322221
Q ss_pred EEEEE---ccc----ccc-ceEE-EEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C
Q 009373 323 LLTVV---NGA----HVG-NTKS-LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P 391 (536)
Q Consensus 323 ~~~~~---~~~----~~~-~i~~-l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~ 391 (536)
..+.+ ... +.. .... ..++.+....+....++.+.+.+-... .. ....+++..++.+| +
T Consensus 160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~------~~----i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF------KQ----IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc------cc----ccCCCCeEEEEECCCCC
Confidence 11111 100 000 0000 223444444444445555554442221 01 12346899999986 6
Q ss_pred eEEEEeCCCcEEEEECC
Q 009373 392 WLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 392 ~l~s~s~dg~i~vwd~~ 408 (536)
+|+.-..+|.+.+....
T Consensus 230 ~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 230 FIALFTDSGNLWVVSSD 246 (410)
T ss_pred EEEEEECCCCEEEEECc
Confidence 88888888998887643
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.024 Score=56.02 Aligned_cols=73 Identities=16% Similarity=0.040 Sum_probs=61.2
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE---EEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI---RAVAADKKLLVAGGTDGFIHCWRAVEVL 231 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v---~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 231 (536)
...|.-+.|+|.-.++|++..+|.|-+..+. .+.+.++..++..+ +|+.|||+.|++|-.||+|++-|++++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3457788999999999999999999999887 77777776555444 4666999999999999999999998764
No 380
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.76 Score=41.53 Aligned_cols=120 Identities=17% Similarity=0.229 Sum_probs=83.5
Q ss_pred eEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccc-cceEEEEEeCCCCEEEEEcCCCcEEEEEccc
Q 009373 286 LKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-GNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 363 (536)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~ 363 (536)
+..+...+-+..+...++++..+. +..++++|+.+......+..-.. +--+++.. .|++..++..|.-+.+.|+.+
T Consensus 80 ~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 80 LSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred EEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence 334445555666667777777777 68899999988765444321112 33344444 588888888666688999988
Q ss_pred CccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373 364 DCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 410 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 410 (536)
+.. +............-..++.++++-+.+..|+-+.+-|+...
T Consensus 158 pss---P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 158 PSS---PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred CCC---ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCC
Confidence 743 24444555555556788899999999999999999999874
No 381
>PHA02790 Kelch-like protein; Provisional
Probab=96.34 E-value=0.29 Score=49.57 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=91.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeCC--CcEEEEEcccCccceecccC
Q 009373 169 SAKLLFTSGYDS-----IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD--GFIHCWRAVEVLPHLFDISG 239 (536)
Q Consensus 169 ~~~~l~sgs~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~ 239 (536)
++.+++.|+.++ ++..||..++.-.. .+............++...+.|+.+ .++..||..++.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~-------- 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA-------- 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe--------
Confidence 456677787653 46678877654222 2221111222234677777888764 357777764432
Q ss_pred cccccceEEeeCCccCEEEEEEeCCEEEEEecCC---eEEEEeCCCceEeEee--ecc-ccEEEEeecCCEEEEecCCcE
Q 009373 240 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM---TVRVWDRALLKCLKVL--RHS-DWVYGLAPHDTTVASTSGSDV 313 (536)
Q Consensus 240 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~--~~~-~~v~~~~~~~~~l~~~~d~~i 313 (536)
......+............++...+.|+.++ .+..||..+.+-...- ... .....+..++++.+.| |.+
T Consensus 343 ---W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 343 ---WVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNA 417 (480)
T ss_pred ---EEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--Cce
Confidence 1111111111112223344777777777654 4678887765433221 111 1112223566666665 356
Q ss_pred EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccC
Q 009373 314 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND 364 (536)
Q Consensus 314 ~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~ 364 (536)
.+||..+++-...-...+...-.+++. -++++.+.|+.+ ..+..||..++
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 789988775443221111111112222 356777888754 34667776655
No 382
>PHA03098 kelch-like protein; Provisional
Probab=96.33 E-value=0.23 Score=51.28 Aligned_cols=189 Identities=11% Similarity=0.017 Sum_probs=92.4
Q ss_pred EEecCCCEEEEEeCCC------cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC-----C
Q 009373 205 AVAADKKLLVAGGTDG------FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----M 273 (536)
Q Consensus 205 ~~~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g 273 (536)
++..++..++.|+.++ .+..||..+.... ....+.........+..++..++.|+.+ .
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-----------~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~ 358 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-----------KVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLN 358 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee-----------ECCCCCcccccceEEEECCEEEEEeCCCCCEecc
Confidence 3446677778887653 4667776654311 1101111111222334477777777765 3
Q ss_pred eEEEEeCCCceEeEe--eeccc-cEEEEeecCCEEEEec-C------CcEEEEeCCCCcEEEEEccccccceEEEEEeCC
Q 009373 274 TVRVWDRALLKCLKV--LRHSD-WVYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 343 (536)
Q Consensus 274 ~i~iwd~~~~~~~~~--~~~~~-~v~~~~~~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~ 343 (536)
.+..||..+.+-... +.... .......++.+++.|+ + ..+..||+.+++....-.......-.++. ..+
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~ 437 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHD 437 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EEC
Confidence 577788776543221 11111 1112235666666665 2 35889998876543221100111111222 235
Q ss_pred CCEEEEEcCCC--------cEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCc
Q 009373 344 GDFLFTGGEDG--------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK 409 (536)
Q Consensus 344 ~~~l~tg~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~ 409 (536)
+.+++.|+.++ .+.+||..+..= ..+..+.........+.+++..++.|+.+ ..|.+||..+
T Consensus 438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKW----TELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CEEEEECCccCCCCCcccceEEEecCCCCce----eeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 66667776432 378888876521 11211111112222334455666666654 4677888765
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=0.0078 Score=51.77 Aligned_cols=138 Identities=17% Similarity=0.090 Sum_probs=78.8
Q ss_pred EEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEE-EEEccccccceEEEEE
Q 009373 265 RIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLL-TVVNGAHVGNTKSLAR 340 (536)
Q Consensus 265 ~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~i~~l~~ 340 (536)
.+..-+.||.|+-++++..+....-. +... ..+. .+..+++.+++|.|.+|+..-.... ..+..+.......+.-
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 35566788999888876543322211 2222 3444 3444444455999999987632111 1111111112222333
Q ss_pred eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC-CCeEEEEEc--CCeEEEE--eCCCcEEEEECCc
Q 009373 341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFE--FPWLVSA--AGDGKLSLIDVRK 409 (536)
Q Consensus 341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~--s~dg~i~vwd~~~ 409 (536)
..++.+..+++.||.|+.|++... +.+.....|+ .++..+... ..+++.+ |.|..++.|++..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPN------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccceeEEeccCCceeeeccccC------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 345568899999999999998877 4444445555 444444432 3566666 7777777777765
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.081 Score=51.33 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=92.4
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCC-------EEEEEeCCCcEEEEEcccCccceecccCccccc
Q 009373 173 LFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKK-------LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN 244 (536)
Q Consensus 173 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~-------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 244 (536)
|.++..-..++--|++.|+.+....-+.. ++..+.|+.+ .-+.|-.|..|.-||.+-.. ..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~-----------~~ 417 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG-----------KN 417 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccC-----------cc
Confidence 44555556677788999999988877665 6666665432 34567788889999976321 11
Q ss_pred ceEEeeCC----ccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEe-ee-ccccEEEEe--ecCCEEEEecCCcEEE
Q 009373 245 TQFRLWEH----EGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVASTSGSDVYI 315 (536)
Q Consensus 245 ~~~~~~~h----~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~d~~i~i 315 (536)
.+....+| .....|++- ...+++.||.+|-|++||- .+...++ +. ...+|..+. .+|+.++++++..+.+
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 11122222 234556655 6689999999999999997 4444333 33 667787766 8999999999999888
Q ss_pred EeCC
Q 009373 316 WDTN 319 (536)
Q Consensus 316 ~d~~ 319 (536)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 8764
No 385
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.02 Score=56.49 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=55.1
Q ss_pred ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceE-EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373 300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK-SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI 377 (536)
Q Consensus 300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 377 (536)
|.-.++|.+. +|.+.+..+. .+.+.++.. +...++ +++|.|||+.|++|-.||+|++.|+..+... .....
T Consensus 30 P~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l-----~~~~~ 102 (665)
T KOG4640|consen 30 PKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL-----VSFLF 102 (665)
T ss_pred CccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce-----ecccc
Confidence 3334445444 4555555555 344444432 444555 9999999999999999999999999988421 22123
Q ss_pred CCCCCeEEEEEcCC
Q 009373 378 PHTGPVNSLAFEFP 391 (536)
Q Consensus 378 ~h~~~v~~l~~~~~ 391 (536)
.-...|.++-|++.
T Consensus 103 s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 103 SVETDISKGIWDRI 116 (665)
T ss_pred ccccchheeecccc
Confidence 34567777777643
No 386
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.18 E-value=2.2 Score=45.50 Aligned_cols=68 Identities=18% Similarity=0.072 Sum_probs=48.1
Q ss_pred eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEE-------------EEe-----ecCCEEEEec----------CCcE
Q 009373 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY-------------GLA-----PHDTTVASTS----------GSDV 313 (536)
Q Consensus 262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~-------------~~~-----~~~~~l~~~~----------d~~i 313 (536)
.+++++.++.|+.+.-.|.++|+....+...+.|. .+. .++..++.++ +|.|
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44688899999999999999999987765433321 111 2344444432 4679
Q ss_pred EEEeCCCCcEEEEEcc
Q 009373 314 YIWDTNSGCLLTVVNG 329 (536)
Q Consensus 314 ~i~d~~~~~~~~~~~~ 329 (536)
+-+|.++|+.+-.+..
T Consensus 339 ~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 339 RAFDVNTGALVWAWDP 354 (764)
T ss_pred EEEECCCCcEeeEEec
Confidence 9999999999988753
No 387
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.11 E-value=2.5 Score=45.17 Aligned_cols=195 Identities=14% Similarity=0.022 Sum_probs=113.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCCCce--------EEEEe------------------cCCCEEEEEeCCCcEE
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT--------IRAVA------------------ADKKLLVAGGTDGFIH 223 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~~~------------------~~~~~l~sg~~dg~i~ 223 (536)
+..|+.++.++.|.-.|..+|+.+..+...... +..+. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 667888888999999999999998877543211 10111 1345888999999999
Q ss_pred EEEcccCccce-ecccCcccccceEEeeCCcc---CEEE-EEEeCCEEEEEec----------CCeEEEEeCCCceEeEe
Q 009373 224 CWRAVEVLPHL-FDISGSEKQNTQFRLWEHEG---PITS-LALDLTRIYSGSW----------DMTVRVWDRALLKCLKV 288 (536)
Q Consensus 224 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~h~~---~v~~-l~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~ 288 (536)
-.|.++|+..- +...+. ......+..... .+++ -...++.++.|+. +|.|+-+|.++|+.+..
T Consensus 274 ALDA~TGk~~W~fg~~G~--vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGT--VDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecCCCc--eeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999886431 111000 000000000000 0111 1224556666643 68999999999999887
Q ss_pred eecc----------cc-----------EEEEeecCCEEEEec-------------------CCcEEEEeCCCCcEEEEEc
Q 009373 289 LRHS----------DW-----------VYGLAPHDTTVASTS-------------------GSDVYIWDTNSGCLLTVVN 328 (536)
Q Consensus 289 ~~~~----------~~-----------v~~~~~~~~~l~~~~-------------------d~~i~i~d~~~~~~~~~~~ 328 (536)
+... +. ..++.+...+++... .++|.-.|.++|+..-.+.
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 6511 11 111222222222211 2457778889998887775
Q ss_pred cccc-c-------ceEEEEEeC-CCC---EEEEEcCCCcEEEEEcccCcc
Q 009373 329 GAHV-G-------NTKSLARSH-TGD---FLFTGGEDGAIHMYEIINDCT 366 (536)
Q Consensus 329 ~~~~-~-------~i~~l~~~~-~~~---~l~tg~~dg~i~iwd~~~~~~ 366 (536)
..|. . ...-+.+.. +|+ .++.++.+|.+.++|-++++.
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 4221 1 112222322 553 799999999999999988854
No 388
>PHA02790 Kelch-like protein; Provisional
Probab=96.00 E-value=0.48 Score=48.00 Aligned_cols=183 Identities=7% Similarity=-0.066 Sum_probs=91.4
Q ss_pred cCCCEEEEEeCCC-----cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC--CeEEEEeC
Q 009373 208 ADKKLLVAGGTDG-----FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD--MTVRVWDR 280 (536)
Q Consensus 208 ~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--g~i~iwd~ 280 (536)
.++..+++|+.++ ++..||..++.. .....+.........+..++...+.|+.+ .++..||.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W-----------~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp 338 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNW-----------IPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFH 338 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEE-----------EECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEEC
Confidence 4556677777653 466677655421 11111111111122234467777777754 35778887
Q ss_pred CCceEeEe--eeccc-cEEEEeecCCEEEEec-C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC
Q 009373 281 ALLKCLKV--LRHSD-WVYGLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 353 (536)
Q Consensus 281 ~~~~~~~~--~~~~~-~v~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d 353 (536)
.+.+-... +.... .......++++.+.|+ + ..+..||..+++....-.......-.+++ .-++.+.+.|+
T Consensus 339 ~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG-- 415 (480)
T PHA02790 339 GDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR-- 415 (480)
T ss_pred CCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC--
Confidence 65533221 22111 1222336777777766 3 35778998876544321111111111222 23566666663
Q ss_pred CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCc
Q 009373 354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK 409 (536)
Q Consensus 354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~ 409 (536)
.+.+||..++. ...+..+.........+..++...+.||.+ ..+..||..+
T Consensus 416 -~~e~ydp~~~~----W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 416 -NAEFYCESSNT----WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred -ceEEecCCCCc----EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 57789886652 223333332233334455566777777754 3466777665
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.014 Score=50.22 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=62.5
Q ss_pred eCCEEEEEecCCeEEEEeCCCceEeEe-ee-ccccEEEEeecC---CEEEEec-CCcEEEEeCCCCcEEEEEccccc-cc
Q 009373 262 DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLAPHD---TTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-GN 334 (536)
Q Consensus 262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~ 334 (536)
.+..++.|+.+|.|.+|+......... +. ....|-++-|.+ .+..++. ++.|+.|++.-++.+.... .|. .+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCC
Confidence 557789999999999998762211111 11 223333333433 3444444 8999999999888777663 465 44
Q ss_pred eEEEEEeCCCCEEEEE--cCCCcEEEEEcccC
Q 009373 335 TKSLARSHTGDFLFTG--GEDGAIHMYEIIND 364 (536)
Q Consensus 335 i~~l~~~~~~~~l~tg--~~dg~i~iwd~~~~ 364 (536)
+..+..+..+..++.+ |.|..++.|++...
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 5555555555666666 66666666766543
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.86 E-value=1.8 Score=41.47 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=78.7
Q ss_pred ECCCCceeeeeCCCCceEE-------EEecCCCEEEEE-eCCCc--EEEEEcccCccceecccCcccccceEEeeCCcc-
Q 009373 186 HLEDGFSIASSKPLGCTIR-------AVAADKKLLVAG-GTDGF--IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG- 254 (536)
Q Consensus 186 d~~~~~~~~~~~~~~~~v~-------~~~~~~~~l~sg-~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 254 (536)
|..||..+..+........ ++..+|+.|+.+ ..||. +.+.|+.++. ..++....+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--------------i~QLTdg~g~ 81 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--------------ITQLTDGPGD 81 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------------EEE---SS-B
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--------------EEECccCCCC
Confidence 5677877777766555443 445677655554 44555 5555666552 222332221
Q ss_pred --CEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccE---EEE-eecCCEEEEec----C-------------
Q 009373 255 --PITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV---YGL-APHDTTVASTS----G------------- 310 (536)
Q Consensus 255 --~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v---~~~-~~~~~~l~~~~----d------------- 310 (536)
.-..++-+.+.++-......|+-.|+.+.+....+. ....+ +-+ ..++..++... +
T Consensus 82 ~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 82 NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp -TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 112233355666555556788888999887766555 33332 222 24555554432 1
Q ss_pred ------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC----c-EEEEEcccCc
Q 009373 311 ------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG----A-IHMYEIINDC 365 (536)
Q Consensus 311 ------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg----~-i~iwd~~~~~ 365 (536)
..|.-.|+.+|+....+. ....+.-+.|+|....+++=+.+| . -|||-+++..
T Consensus 162 ~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp HHC---EEEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred HhhCCCceEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 126667888887665553 455677888999766555544333 1 4778777653
No 391
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.79 E-value=1.7 Score=40.76 Aligned_cols=178 Identities=19% Similarity=0.172 Sum_probs=93.3
Q ss_pred EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-e-CCEEEEEecCCeEEEEeCCCceEeEee
Q 009373 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-LTRIYSGSWDMTVRVWDRALLKCLKVL 289 (536)
Q Consensus 212 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~~~l~s~s~dg~i~iwd~~~~~~~~~~ 289 (536)
++.+--..+.|.-|+..++.. ..+ .+.+.+.++.. + +..|+++. ..+.+++.+++.....+
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~--------------~~~-~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK--------------RVF-PSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLL 101 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce--------------EEE-ECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEe
Confidence 445555566777777654421 111 22333444444 3 34555543 33556666555543322
Q ss_pred e---cc---ccEE--EEeecCCEEEEecC------------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE
Q 009373 290 R---HS---DWVY--GLAPHDTTVASTSG------------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT 349 (536)
Q Consensus 290 ~---~~---~~v~--~~~~~~~~l~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t 349 (536)
. .. ...+ .+.++|.+.++... |.++.+|. .+...+.+. .+-...+.++||||++.|..
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEE
Confidence 2 11 1222 23377777776443 33555554 455554443 45667789999999987777
Q ss_pred EcC-CCcEEEEEccc-CccccccceeeeccCCCCCeEEEEEcC-CeEE-EEeCCC-cEEEEECC
Q 009373 350 GGE-DGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAFEF-PWLV-SAAGDG-KLSLIDVR 408 (536)
Q Consensus 350 g~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~-s~s~dg-~i~vwd~~ 408 (536)
+.. .+.|.-|++.. ............+....+..-.++.+. ..+. ++..+| .|.+|+..
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 655 47788888763 111111122222223445556666653 3333 444444 88888876
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.74 Score=41.41 Aligned_cols=197 Identities=18% Similarity=0.258 Sum_probs=99.8
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCC-ceeeeeCCCCceE--EEEecCCCEEEEEeCCCcEE
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYD-----SIVRMWHLEDG-FSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIH 223 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~d-----g~v~iwd~~~~-~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~ 223 (536)
+.+.||. .|+|||.+|+..-.| |.|-|||...+ +.+..+..|...- +.+.+||+.++.+.. -|.
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIe 184 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIE 184 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--cee
Confidence 4555663 389999999876544 78999998755 3455555555433 445589998887643 232
Q ss_pred EE--------EcccCccceeccc-CcccccceEEee--CCccCEEEEEEe-CCEEEEEe-cCCe-----EEEEeCCCceE
Q 009373 224 CW--------RAVEVLPHLFDIS-GSEKQNTQFRLW--EHEGPITSLALD-LTRIYSGS-WDMT-----VRVWDRALLKC 285 (536)
Q Consensus 224 vw--------d~~~~~~~~~~~~-~~~~~~~~~~~~--~h~~~v~~l~~~-~~~l~s~s-~dg~-----i~iwd~~~~~~ 285 (536)
.- |+++.++.+.-+. .........++. .+.-.|..++.+ .+.+..|. ..|. -.+=-...++.
T Consensus 185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc
Confidence 22 2222221111111 001111112222 334456666662 22222222 1110 01111122333
Q ss_pred eEeee--------ccccEEEEee--cCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC
Q 009373 286 LKVLR--------HSDWVYGLAP--HDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 353 (536)
Q Consensus 286 ~~~~~--------~~~~v~~~~~--~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d 353 (536)
+..+. ....|-+++. +..+++.++ ++...+||..+|..+..-.- .....+ .+...-+++.+.+
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l---~daaGv--a~~~~gf~vssg~ 339 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL---PDAAGV--AAAKGGFAVSSGQ 339 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc---cccccc--eeccCceEEecCC
Confidence 33332 2345556663 355566555 56788999999987765421 112222 2334456777788
Q ss_pred CcEEEEEc
Q 009373 354 GAIHMYEI 361 (536)
Q Consensus 354 g~i~iwd~ 361 (536)
|.+.++.-
T Consensus 340 G~~~~~s~ 347 (366)
T COG3490 340 GRIIFYSR 347 (366)
T ss_pred ceEEeccc
Confidence 99988853
No 393
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.7 Score=39.52 Aligned_cols=168 Identities=19% Similarity=0.157 Sum_probs=96.6
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceeeeeCCCCceEEE--EecCCCEEE-EEeCCCcEEEEEcccCccceecccCcccc
Q 009373 169 SAKLLFTSGY--DSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLV-AGGTDGFIHCWRAVEVLPHLFDISGSEKQ 243 (536)
Q Consensus 169 ~~~~l~sgs~--dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 243 (536)
+|.++.+.+. ...|++||+.+|+.+....-....+.. +..-++.+. -.-.+|.-..+|..+.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~------------ 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE------------ 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh------------
Confidence 4566666554 346999999999887654322111111 111223222 23345666677765432
Q ss_pred cceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe----ecCCEEEEec-CCcEEE
Q 009373 244 NTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA----PHDTTVASTS-GSDVYI 315 (536)
Q Consensus 244 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~----~~~~~l~~~~-d~~i~i 315 (536)
....+ .-.+.=..++.++..|+.++...+++.-|.++.....++. ...+|..+. -+|...+-.- ...|..
T Consensus 123 -~lg~~-~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~r 200 (262)
T COG3823 123 -ELGRF-SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIAR 200 (262)
T ss_pred -hhccc-ccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEE
Confidence 11111 2245556777778778887777788888887766555544 333444333 3455544443 566777
Q ss_pred EeCCCCcEEEEEc-----------cccccceEEEEEeCCCC-EEEEE
Q 009373 316 WDTNSGCLLTVVN-----------GAHVGNTKSLARSHTGD-FLFTG 350 (536)
Q Consensus 316 ~d~~~~~~~~~~~-----------~~~~~~i~~l~~~~~~~-~l~tg 350 (536)
.|..+|+.+..+. ..+..-.+.+++.|++. +++||
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 7777777665542 13455678899999885 45554
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.58 E-value=0.036 Score=35.11 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=28.5
Q ss_pred cccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373 331 HVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361 (536)
Q Consensus 331 ~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~ 361 (536)
....|.+++|+|..++||.|+.+|.|.+|.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 4457899999999999999999999999998
No 395
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.54 E-value=1.9 Score=44.69 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=40.0
Q ss_pred ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEE
Q 009373 332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSL 404 (536)
Q Consensus 332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v 404 (536)
...+..+.|.+++.++ ++..++...+|.+.-..... ....-.....++.+|+-++..++....+|.+.+
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~---~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS---DALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEEEecCCccc---cccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 3345788999988854 55555555566654432111 110111135677888877777777777774443
No 396
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.38 E-value=0.88 Score=44.95 Aligned_cols=185 Identities=15% Similarity=0.045 Sum_probs=101.7
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEe---CC-CcEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEE-EeCCCcEEE
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSG---YD-SIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVA-GGTDGFIHC 224 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs---~d-g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s-g~~dg~i~v 224 (536)
.+.+..-...+..-+|+|++..++-.+ .. ..+.++++.+++...... ......-.++|||+.|+. ...||...+
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 445555556677778999887655432 22 458999999886554443 222344578899886654 455666544
Q ss_pred E--EcccCccceecccCcccccceEEeeCCccC--EEEEEEeCCEEEEEe-cCCe--EEEEeCCCceEeEee-e-ccccE
Q 009373 225 W--RAVEVLPHLFDISGSEKQNTQFRLWEHEGP--ITSLALDLTRIYSGS-WDMT--VRVWDRALLKCLKVL-R-HSDWV 295 (536)
Q Consensus 225 w--d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~-~-~~~~v 295 (536)
| |+.++. ...+..-.+. -.++.-+|+.++..+ ..|. |.+.|.+........ . .....
T Consensus 265 y~~dl~~~~--------------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~ 330 (425)
T COG0823 265 YLMDLDGKN--------------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSN 330 (425)
T ss_pred EEEcCCCCc--------------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcC
Confidence 4 554432 1112111111 112222777766554 4443 566676655542222 1 22224
Q ss_pred EEEeecCCEEEEec--CCc--EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc
Q 009373 296 YGLAPHDTTVASTS--GSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG 351 (536)
Q Consensus 296 ~~~~~~~~~l~~~~--d~~--i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~ 351 (536)
-.++|+|+.++..+ +|. |.+.|+.++...+.+. .......-.+.|+|..+...+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEec
Confidence 45569999988877 455 7777777666444432 333333445666666555433
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.28 E-value=4.3 Score=43.15 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=91.6
Q ss_pred CCeEEEEeCCCceEeE---eeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE
Q 009373 272 DMTVRVWDRALLKCLK---VLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF 348 (536)
Q Consensus 272 dg~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 348 (536)
.|.|.++.+...+.+. ...-.+.+.++..-+..++++-+..|++|+..+++.++.- ..+..++..+...-.|+.++
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e-~~~~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIE-CNISNPIIALDLQVKGDEIA 884 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehhh-hcccCCeEEEEEEecCcEEE
Confidence 4677777766533332 2336677888874444555666889999999998766654 35888899999999999999
Q ss_pred EEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE-cCCeEEEEeCCCcEEEEECCc
Q 009373 349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~ 409 (536)
+|.-=+++.+-..+..+ ..+..+. -.-+...++++.+ +.+.++.+..+|.+.+-...+
T Consensus 885 VgDlm~Sitll~y~~~e--g~f~evA-rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDE--GNFEEVA-RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EeeccceEEEEEEeccC--CceEEee-hhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence 99988888877766552 1111221 1235566777776 557777777888888876654
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.17 E-value=2 Score=41.61 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=100.2
Q ss_pred CCEEEEEe-cCCeEEEEeCC----CceEeEeeec-----cccEE---EE-e-ecCCEEEEec---C----CcEEEEeCCC
Q 009373 263 LTRIYSGS-WDMTVRVWDRA----LLKCLKVLRH-----SDWVY---GL-A-PHDTTVASTS---G----SDVYIWDTNS 320 (536)
Q Consensus 263 ~~~l~s~s-~dg~i~iwd~~----~~~~~~~~~~-----~~~v~---~~-~-~~~~~l~~~~---d----~~i~i~d~~~ 320 (536)
.++|+..+ ..+.|.|.|+. ..+..++++. ...+. .+ + |+|++++++- + |.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666665 77899999987 4455555541 11111 12 2 7787777753 2 4599999998
Q ss_pred CcEEEEEcccc--ccceEEEEEeCCCCEEEEEcC--------------------CCcEEEEEcccCccccccceeeeccC
Q 009373 321 GCLLTVVNGAH--VGNTKSLARSHTGDFLFTGGE--------------------DGAIHMYEIINDCTEANVLLVATWIP 378 (536)
Q Consensus 321 ~~~~~~~~~~~--~~~i~~l~~~~~~~~l~tg~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 378 (536)
.+......... ..--+.+-+.|..+.+++... ..++.+||+... +.++++.-
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r------~~~Q~idL 240 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR------KLLQTIDL 240 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT------EEEEEEES
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC------cEeeEEec
Confidence 88877765422 234566778888888887642 346999999998 45555443
Q ss_pred C--CCCeEEEEE--cC--Ce-EEEEeCCCcEEEEEC-CcccccCCCCCCCceeeEEeeCCC----------eeeeccccc
Q 009373 379 H--TGPVNSLAF--EF--PW-LVSAAGDGKLSLIDV-RKLLRSGRPTSGKRVSRVIEVEPP----------QRMLHGFEC 440 (536)
Q Consensus 379 h--~~~v~~l~~--~~--~~-l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 440 (536)
- ...+..|.| +| .+ ++.+.-.++|..|-- ..+. + .+..+.++... .+.+.....
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W------~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--W------AAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--E------EEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--e------eeeEEEECCCcccCcccccccccccccCCC
Confidence 2 234667777 34 22 333334445554433 2211 0 01111111111 011111123
Q ss_pred cEEE--EEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhh-h--------cccchhHHHhhhhccccccCCCCccee
Q 009373 441 NLLS--VDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARAL-R--------GIRLENRMRRRKLQTEMSSKGGRTDQC 507 (536)
Q Consensus 441 ~v~~--~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~ 507 (536)
-++. ++.+++ +.++.=.+|.||.||++.....+...... . ......+....++-+..|.||+++-.+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 3445 445555 45666679999999999755433221100 0 111122334445678899999999875
No 399
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.82 E-value=3 Score=37.77 Aligned_cols=160 Identities=13% Similarity=0.056 Sum_probs=88.0
Q ss_pred EeeCCccCEEEEEEeC--C-EEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe--ecCCEEEEec-CCcEEEEeCC
Q 009373 248 RLWEHEGPITSLALDL--T-RIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTN 319 (536)
Q Consensus 248 ~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~ 319 (536)
.+.+-...+..++|++ + .+++....+.|..++. +|+.+..+. ..+..-.+. .++.++++.. ++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4556666799999943 4 5566677788888886 578887776 223445555 4444555444 7888888883
Q ss_pred CCc------EEEEEc----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc-----eeeeccCCCCCeE
Q 009373 320 SGC------LLTVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL-----LVATWIPHTGPVN 384 (536)
Q Consensus 320 ~~~------~~~~~~----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~h~~~v~ 384 (536)
... ....+. ..+...+-.++|+|.++.|+++-+..-..+|.+.......... ...........+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 1244568999999998888888887778888887511000000 0111223445678
Q ss_pred EEEEcC---CeEEEEeCCCcEEEEECC
Q 009373 385 SLAFEF---PWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 385 ~l~~~~---~~l~s~s~dg~i~vwd~~ 408 (536)
+++++| .+++.......|..+|..
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred ceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 899987 366666667788888844
No 400
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=3 Score=37.71 Aligned_cols=225 Identities=11% Similarity=0.049 Sum_probs=120.8
Q ss_pred EEEEecCCC-EEEEEeCCCc-EEEEECCCCceeeeeCCCCceE----EEEecCCCEEEEEeCC-----CcEEEEEcccCc
Q 009373 163 TVFVLASAK-LLFTSGYDSI-VRMWHLEDGFSIASSKPLGCTI----RAVAADKKLLVAGGTD-----GFIHCWRAVEVL 231 (536)
Q Consensus 163 ~v~~~~~~~-~l~sgs~dg~-v~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~ 231 (536)
.|+|+|... -++.+=.-|+ ..++|..+.+...++......- -.+++||.+|+..-.| |.|-|||.+.+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 566777543 4555555554 5689998887666553332221 2578999999886544 789999987653
Q ss_pred cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec------------------CCeEEEEeCCCceEeEeee-
Q 009373 232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------------------DMTVRVWDRALLKCLKVLR- 290 (536)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------------------dg~i~iwd~~~~~~~~~~~- 290 (536)
..+-.+..|.-.-..+.+ ||..++.+.. .-.+.+.|..++..+.+..
T Consensus 152 ------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 152 ------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred ------------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 234445555555555555 7776665432 1123333444444443332
Q ss_pred ----ccccEEEEe--ecCCEEEEec-CCc-----EEEEeCCCCcEEEEEcc------ccccceEEEEEeCCCCEEEEEcC
Q 009373 291 ----HSDWVYGLA--PHDTTVASTS-GSD-----VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGE 352 (536)
Q Consensus 291 ----~~~~v~~~~--~~~~~l~~~~-d~~-----i~i~d~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l~tg~~ 352 (536)
+.-.+.-++ .++..++.+. .|. -.+=-...++.+..+.- .....|-+++.+.+..+++..+-
T Consensus 220 p~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 220 PASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred chhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC
Confidence 222333333 5555555543 111 11111122333333321 12234667777766666665555
Q ss_pred C-CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEEC
Q 009373 353 D-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 353 d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 407 (536)
. +...+||..++. .+..- .-.....++-...-++..+.+|.+.++.-
T Consensus 300 ~GN~~vi~da~tG~------vv~~a--~l~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 300 RGNRAVIWDAATGA------VVSEA--ALPDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CCCeEEEEEcCCCc------EEecc--cccccccceeccCceEEecCCceEEeccc
Confidence 4 457889999983 22211 11122334444566677778888888743
No 401
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.75 E-value=4.6 Score=39.57 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=52.3
Q ss_pred EEEEecCCCEEEEEeCCCcEEE---EECC-----CCceeeee----CCC-CceEEEEe-------------cCCCEEEEE
Q 009373 163 TVFVLASAKLLFTSGYDSIVRM---WHLE-----DGFSIASS----KPL-GCTIRAVA-------------ADKKLLVAG 216 (536)
Q Consensus 163 ~v~~~~~~~~l~sgs~dg~v~i---wd~~-----~~~~~~~~----~~~-~~~v~~~~-------------~~~~~l~sg 216 (536)
.++.+|++++||.|..+..+.+ |+.. .+...... ... ...|+++. +|...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4577899999999988777665 6431 11111111 111 13444332 345689999
Q ss_pred eCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE
Q 009373 217 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL 261 (536)
Q Consensus 217 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 261 (536)
..+|.|++|.-.. ..+..-.-|..+|..+..
T Consensus 86 ~ssG~vrfyte~G--------------~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 86 TSSGYVRFYTENG--------------VLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred ecccEEEEEeccc--------------hHHHHHhcCccceEEEEe
Confidence 9999999998522 133333457888888887
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=0.83 Score=44.74 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=85.9
Q ss_pred EEEEecCCeEEEEeCCCceEeEeeeccccE--EEEeec--------CCEEEEecCCcEEEEeCCCCcE-EEEEcccc---
Q 009373 266 IYSGSWDMTVRVWDRALLKCLKVLRHSDWV--YGLAPH--------DTTVASTSGSDVYIWDTNSGCL-LTVVNGAH--- 331 (536)
Q Consensus 266 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~~--------~~~l~~~~d~~i~i~d~~~~~~-~~~~~~~~--- 331 (536)
|.++.....++-.|++.|+.+........| ..+.|+ ...|+.-++..|.-||++-... ......+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 455666677888899999999888733333 333333 3456777789999999985322 11111122
Q ss_pred -ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECC
Q 009373 332 -VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 332 -~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 408 (536)
.....|.+-..+ .++++||.+|.|++||- .+. ..-..+.+-..+|..+..+ +.+|++. .+..+.+.++.
T Consensus 429 ~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~-----~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGR-----RAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred cccccceeeecCC-ceEEEeecCCcEEeehh-hhh-----hhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 223455554444 47999999999999996 331 2233456677888888774 5555544 45677777764
No 403
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.45 E-value=5.1 Score=38.81 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=42.9
Q ss_pred ecCCCEEEEE---------eCCCcEEEEECCCCceeeeeCC-CCceEEEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009373 167 LASAKLLFTS---------GYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL 231 (536)
Q Consensus 167 ~~~~~~l~sg---------s~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 231 (536)
|||+++++.. +..+...|+|+++++....... ....-..++|+|+.++... ++.|.+++..++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 5677766653 2346789999999765544333 3455667889999888775 5789999876663
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=7.2 Score=40.33 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=36.1
Q ss_pred CCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccC
Q 009373 179 DSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 179 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~ 230 (536)
--.|+||+.. |+.+.++.-..+.+..+. .+...|+.-..+|++++|++-..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence 3568888864 666655544344677777 45667888999999999998543
No 405
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=94.05 E-value=0.062 Score=41.63 Aligned_cols=68 Identities=22% Similarity=0.410 Sum_probs=51.4
Q ss_pred ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhh
Q 009373 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVE 137 (536)
Q Consensus 64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~ 137 (536)
+..+|.+++.-||..+.|..|..+..-|.... ..++.||+.++.+.|+..... ....+...|+.+|..
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~----~~~~~~~~Wr~~Y~~ 71 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKR----QKPKEPESWRELYEK 71 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhc----ccccccchHHHHHHH
Confidence 77899999999999999999999998884332 357899999988899641111 122334589999865
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.50 E-value=2.7 Score=36.86 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=40.0
Q ss_pred EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373 337 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 337 ~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
.+++..+|.+.++.-..|+|...|+.++ +.+.++.-....|+|++|-+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tG------K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTG------KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCC------cEEEEEEcCCCceEEEEecC
Confidence 3445668898888888999999999999 67777777799999999975
No 407
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.23 E-value=8.8 Score=37.40 Aligned_cols=95 Identities=15% Similarity=0.254 Sum_probs=50.8
Q ss_pred cCCeEEEEeCCCceEeEeeecc---ccEEEEe----ecCCEEEEec--CCcEEEEeC-CCCc----EEEEEccc------
Q 009373 271 WDMTVRVWDRALLKCLKVLRHS---DWVYGLA----PHDTTVASTS--GSDVYIWDT-NSGC----LLTVVNGA------ 330 (536)
Q Consensus 271 ~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~----~~~~~l~~~~--d~~i~i~d~-~~~~----~~~~~~~~------ 330 (536)
...++.+||+.+.+.++++... .-...+. |+..+-+++. .++|..|-- ..++ .+..+...
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3478999999999999999832 2223333 4444444333 666655543 4443 22222110
Q ss_pred ----------cccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCc
Q 009373 331 ----------HVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDC 365 (536)
Q Consensus 331 ----------~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~ 365 (536)
-..-|+.+.+|.|.++|..+. .+|.|+.||+.+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 024578999999999876654 58999999998874
No 408
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.09 E-value=8.7 Score=36.94 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=81.6
Q ss_pred EEecCCCEEEE-EeCCCc--EEEEECCCCceeeeeCCCC--ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccC
Q 009373 165 FVLASAKLLFT-SGYDSI--VRMWHLEDGFSIASSKPLG--CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG 239 (536)
Q Consensus 165 ~~~~~~~~l~s-gs~dg~--v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 239 (536)
+|.++|+.|+- +..||. +.+-|+.+++..+-..+.. ..-..++++.+.++-...+..|.-.|+.+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~------- 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE------- 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-------
Confidence 46778865554 444554 6666788876655443221 11245567777776555556788888877642
Q ss_pred cccccceEEeeCCccCEEEEEE----eCCEEEE----------------------EecCCeEEEEeCCCceEeEeeeccc
Q 009373 240 SEKQNTQFRLWEHEGPITSLAL----DLTRIYS----------------------GSWDMTVRVWDRALLKCLKVLRHSD 293 (536)
Q Consensus 240 ~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s----------------------~s~dg~i~iwd~~~~~~~~~~~~~~ 293 (536)
..+..+ ....+-...| ++..++- +-....|.--|+.+++....+....
T Consensus 115 ----~~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 115 ----RVVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp ----EEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred ----EEEEEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence 111111 2222222222 2222211 1112355666788888777777667
Q ss_pred cEEEEe---ecCCEEEEecCC-----cEEEEeCCC-CcEEEEEcccc-ccceEEEEEeCCCCEEEEE-----cCCCcEEE
Q 009373 294 WVYGLA---PHDTTVASTSGS-----DVYIWDTNS-GCLLTVVNGAH-VGNTKSLARSHTGDFLFTG-----GEDGAIHM 358 (536)
Q Consensus 294 ~v~~~~---~~~~~l~~~~d~-----~i~i~d~~~-~~~~~~~~~~~-~~~i~~l~~~~~~~~l~tg-----~~dg~i~i 358 (536)
++.-+. .++.+++-|..| .-+||-+++ +.....+.... ...+.-=-|.|+|..|.-- +.+..|.-
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 766665 455566666532 236665543 33333332111 1223333478888765432 22445666
Q ss_pred EEcccC
Q 009373 359 YEIIND 364 (536)
Q Consensus 359 wd~~~~ 364 (536)
+|+.++
T Consensus 269 ~d~~t~ 274 (386)
T PF14583_consen 269 YDPDTG 274 (386)
T ss_dssp E-TTT-
T ss_pred eCCCCC
Confidence 777665
No 409
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.92 E-value=9.5 Score=36.93 Aligned_cols=212 Identities=15% Similarity=0.065 Sum_probs=107.6
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CC------------------CCceEEEEecCCCEEEEEeC
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KP------------------LGCTIRAVAADKKLLVAGGT 218 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~------------------~~~~v~~~~~~~~~l~sg~~ 218 (536)
...+....|+|+|+.++-.. ++.|.+++..++...+-. .+ .....+-++||++.|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 66788899999999988876 678999998877544322 11 11234567788888887655
Q ss_pred C-CcEEEEEcccCccceecccCcccccceEEeeCCc---cCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-e-
Q 009373 219 D-GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE---GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R- 290 (536)
Q Consensus 219 d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~- 290 (536)
| ..|..+.+.. ..... ..+..+.+ -|..-.. -.+.++|+.+++....- .
T Consensus 121 d~~~v~~~~~~~-------------------~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 121 DEREVPEYPLPD-------------------YSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp E-TTS-EEEEEE-------------------ESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---H
T ss_pred CCcCCceEEeec-------------------cCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeecc
Confidence 4 3444443311 11111 12334443 1211111 14566788777653211 1
Q ss_pred ----ccccEEEEe--ecCC-EEEEec--C---CcEEEEeCCCCcEEEEEccccccc---eEEEEEe-CCCC-EEEEEcCC
Q 009373 291 ----HSDWVYGLA--PHDT-TVASTS--G---SDVYIWDTNSGCLLTVVNGAHVGN---TKSLARS-HTGD-FLFTGGED 353 (536)
Q Consensus 291 ----~~~~v~~~~--~~~~-~l~~~~--d---~~i~i~d~~~~~~~~~~~~~~~~~---i~~l~~~-~~~~-~l~tg~~d 353 (536)
....+..+. +++. +++.-. + ..+.++|..+++..........+. .....+. +++. ++.....|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 233444554 6666 343333 2 237778888776544333222222 2244554 5554 55566678
Q ss_pred CcEEEEEcccCccccccceeeeccCCCCCeEE-EEEcC--C-eEEEEeC
Q 009373 354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEF--P-WLVSAAG 398 (536)
Q Consensus 354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~-~l~s~s~ 398 (536)
|.-+||-+.... .....+....-.|+. +.+++ + ..+++..
T Consensus 258 G~~hly~~~~~~-----~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 258 GYRHLYLYDLDG-----GKPRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp SSEEEEEEETTS-----SEEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred CCcEEEEEcccc-----cceeccccCceeecccceEcCCCCEEEEEecC
Confidence 876666555442 123345555666755 44554 3 3445554
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.76 E-value=1.3 Score=39.38 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=29.5
Q ss_pred cCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373 254 GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV 288 (536)
Q Consensus 254 ~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 288 (536)
.++..+..+++++++.+.+|.+++||+.+++.+..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~ 47 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLP 47 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccC
Confidence 45666777999999999999999999999877544
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.66 E-value=6.2 Score=40.77 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=66.5
Q ss_pred cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe--CCCCEEEEEcCCCcEEEEEcc-----cCccccccce
Q 009373 301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS--HTGDFLFTGGEDGAIHMYEII-----NDCTEANVLL 372 (536)
Q Consensus 301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~l~tg~~dg~i~iwd~~-----~~~~~~~~~~ 372 (536)
-++..++.+ ...+.|||.+.+.......-...+.|..+.|. |+|+.+++.+..+.|.+|.-. ... +...+
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~--p~w~~ 117 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG--PSWAP 117 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC--cccce
Confidence 344444444 56799999999875544332357789999885 678888888888999988542 111 11222
Q ss_pred eee--ccCCC-CCeEEEEEcC-CeEEEEeCCCcEEEEEC
Q 009373 373 VAT--WIPHT-GPVNSLAFEF-PWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 373 ~~~--~~~h~-~~v~~l~~~~-~~l~s~s~dg~i~vwd~ 407 (536)
+.. +..|+ .+|.+..|-+ ..+++|+ ++.+.|+|-
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 222 23444 5788899965 5666555 446888874
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.64 E-value=0.6 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=26.6
Q ss_pred ccEEEEEEecCC---CEEEEEeCCCcEEEEECCCC
Q 009373 159 EAVLTVFVLASA---KLLFTSGYDSIVRMWHLEDG 190 (536)
Q Consensus 159 ~~V~~v~~~~~~---~~l~sgs~dg~v~iwd~~~~ 190 (536)
++|.+|.|+|++ .+|+.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999854 48888888899999999853
No 413
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.61 E-value=11 Score=37.01 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=78.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCce----eeeeCCCCceEEEEec-------CCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFS----IASSKPLGCTIRAVAA-------DKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 238 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 238 (536)
...+++||..|.++||+...+.. +.--..-..+|+.+.. +...|++ =.-..+.+|.+...... ..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~---~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT---VE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC---cc
Confidence 45899999999999999854431 1111223456666651 1223333 45566777776322100 00
Q ss_pred CcccccceEEeeCCcc--CEEEEE---E---e-CCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEeecCCEEE
Q 009373 239 GSEKQNTQFRLWEHEG--PITSLA---L---D-LTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVA 306 (536)
Q Consensus 239 ~~~~~~~~~~~~~h~~--~v~~l~---~---~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~ 306 (536)
. ...........|.- ....++ | . .+.++.-+.||.+.+|+-+.......+. .++++.-+...+.++.
T Consensus 113 ~-g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 H-GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred c-CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence 0 00112222223322 222222 3 2 3678999999999999977655444444 5555544444444555
Q ss_pred EecCCcEEEEeC
Q 009373 307 STSGSDVYIWDT 318 (536)
Q Consensus 307 ~~~d~~i~i~d~ 318 (536)
+.++..+..|..
T Consensus 192 ~sss~~l~~Yky 203 (418)
T PF14727_consen 192 ASSSWTLECYKY 203 (418)
T ss_pred ecCceeEEEecH
Confidence 555677777754
No 414
>PF13013 F-box-like_2: F-box-like domain
Probab=92.28 E-value=0.18 Score=38.58 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=29.1
Q ss_pred ccccCCcHHHHHHHhcCCChhhHHHHhhhhHHH
Q 009373 62 STITDLPPALISEILNCLDPKELGIVSCVSPIL 94 (536)
Q Consensus 62 ~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~ 94 (536)
-.+.+||.||+..||.|.+..++..++.+|+..
T Consensus 20 ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~ 52 (109)
T PF13013_consen 20 LTLLDLPWELLQLIFDYCNDPILLALSRTCRAY 52 (109)
T ss_pred cchhhChHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 347889999999999999999999999998833
No 415
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.27 E-value=13 Score=38.75 Aligned_cols=74 Identities=16% Similarity=0.020 Sum_probs=43.8
Q ss_pred ccceEEEEEeCCCCEEEEEcCCCcEEEEEc---ccCccccccceeeeccC-CCCCeEEEEEcC-CeEEEEeCCCcEEEEE
Q 009373 332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLID 406 (536)
Q Consensus 332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~---~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd 406 (536)
.+.|..+.|+|||..++... +|.|.+=-+ ..+. ..+.....+.. -...+.++.|.+ ..|+.+..++...+|.
T Consensus 447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~ 523 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWY 523 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEE
Confidence 45799999999999887765 577777332 2221 11111122222 233468899964 4566666666556666
Q ss_pred CC
Q 009373 407 VR 408 (536)
Q Consensus 407 ~~ 408 (536)
+.
T Consensus 524 v~ 525 (591)
T PRK13616 524 VN 525 (591)
T ss_pred Ee
Confidence 54
No 416
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.12 E-value=5.1 Score=31.92 Aligned_cols=97 Identities=8% Similarity=0.079 Sum_probs=66.2
Q ss_pred EEEEEecCCeEEEEeCCC--------ceEeEeeeccccEEEEe-------ecCCEEEEecCCcEEEEeCCCCcEEEEEcc
Q 009373 265 RIYSGSWDMTVRVWDRAL--------LKCLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYIWDTNSGCLLTVVNG 329 (536)
Q Consensus 265 ~l~s~s~dg~i~iwd~~~--------~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~ 329 (536)
.|+.++.-|.|.|++... ...+..+.....|++++ .....|+.|+...+..||+.....+..-
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyk-- 89 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYK-- 89 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhh--
Confidence 577788889999998763 33556677778888886 2356899999999999999887665433
Q ss_pred ccccceEEEEEeC----CCCEEEEEcCCCcEEEEEcccC
Q 009373 330 AHVGNTKSLARSH----TGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 330 ~~~~~i~~l~~~~----~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
.-...++++.+-. ...++++| .+..|.-||....
T Consensus 90 e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 90 EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 2446677777633 23444444 4556666665443
No 417
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.12 E-value=9.3 Score=34.94 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=95.5
Q ss_pred CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccc--cEEEEe--ecCCEEEEec-CCcEEEEeCCCCcE
Q 009373 251 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL 323 (536)
Q Consensus 251 ~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~ 323 (536)
+-...|.++.| +.+.|++......-.++=...|+.+.++...+ ..-++. -++.++++-. +..+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44556999999 45678888877777787777888888876211 112233 3344444444 67777776655422
Q ss_pred EEEE-----c---ccc-ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC-------CCCeEEEE
Q 009373 324 LTVV-----N---GAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-------TGPVNSLA 387 (536)
Q Consensus 324 ~~~~-----~---~~~-~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~ 387 (536)
+... . ..+ ....-.++|+|....|+.+-+-.-+.||.+...... ..+.....+ -..|.++.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccccccCcccccceEeeccccce
Confidence 2111 1 112 556789999999999999988888888887754211 111111122 23466777
Q ss_pred EcC---CeEEEEeCCCcEEEEECCc
Q 009373 388 FEF---PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 388 ~~~---~~l~s~s~dg~i~vwd~~~ 409 (536)
|++ ..|+-+..++.+.-.|...
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCC
Confidence 874 4666666677777676653
No 418
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.99 E-value=4 Score=40.43 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=73.9
Q ss_pred CeEEEEeCCCceEeEeee--ccccEEEEeecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCE
Q 009373 273 MTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF 346 (536)
Q Consensus 273 g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 346 (536)
..+.++|+.+++...... .....-.++|+|+.++.+. ++ .|.++|+..+...+ +.. ..+.-..=.|+|+|+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGSK 295 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc-CCccccCccCCCCCCE
Confidence 468899999887766655 4445556779999888776 44 48888998877443 432 2222235568999997
Q ss_pred EEEEc-CCCc--EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC-CCc--EEEEECCc
Q 009373 347 LFTGG-EDGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGK--LSLIDVRK 409 (536)
Q Consensus 347 l~tg~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~--i~vwd~~~ 409 (536)
++-.+ ..|. |.+++..... ....+..+-... .-.++| ++++..+. +|. |.+.|+.+
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~-----~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQ-----VTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCc-----eeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 76554 4565 4444444442 112222222222 333444 56665554 344 55555544
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.96 E-value=0.59 Score=28.72 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=26.3
Q ss_pred cceEEEEEeCCC---CEEEEEcCCCcEEEEEcccC
Q 009373 333 GNTKSLARSHTG---DFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 333 ~~i~~l~~~~~~---~~l~tg~~dg~i~iwd~~~~ 364 (536)
+.+.++.|+|.+ ++|+.+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999854 48888888899999999964
No 420
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.94 E-value=13 Score=36.31 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=10.7
Q ss_pred EEEecCCEEEEecCC
Q 009373 444 SVDIGADRIVCGGEE 458 (536)
Q Consensus 444 ~~~~~~~~l~sg~~D 458 (536)
++..++..++.||..
T Consensus 339 av~~~~~iyv~GG~~ 353 (376)
T PRK14131 339 SVSWNNGVLLIGGET 353 (376)
T ss_pred EEEeCCEEEEEcCCC
Confidence 556677788888764
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.89 E-value=20 Score=38.22 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.8
Q ss_pred cccceEEEEEeCC---CCEEEEEcCCCcEEEEEcccCc
Q 009373 331 HVGNTKSLARSHT---GDFLFTGGEDGAIHMYEIINDC 365 (536)
Q Consensus 331 ~~~~i~~l~~~~~---~~~l~tg~~dg~i~iwd~~~~~ 365 (536)
+...|..+.|+|. +..|++=..|+++|+||+....
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 4557888899986 4688888889999999997653
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.68 E-value=13 Score=38.95 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=65.3
Q ss_pred CEEEEEE----eCCEEEEEecCCeEEEEeCCC-------c-------------eEeEeeeccccEEEEee----cCCEEE
Q 009373 255 PITSLAL----DLTRIYSGSWDMTVRVWDRAL-------L-------------KCLKVLRHSDWVYGLAP----HDTTVA 306 (536)
Q Consensus 255 ~v~~l~~----~~~~l~s~s~dg~i~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~----~~~~l~ 306 (536)
.|+-|.. +.+.|+.|.+||.|.+|.+++ . ++...+.....+.+++. ..+++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 3555544 557899999999999996421 0 01122234455666663 366777
Q ss_pred EecC-CcEEEEeCCC--CcEEEEEccccccceEEEEEeCCC---C---EEEEEcCCCcEEEEEc
Q 009373 307 STSG-SDVYIWDTNS--GCLLTVVNGAHVGNTKSLARSHTG---D---FLFTGGEDGAIHMYEI 361 (536)
Q Consensus 307 ~~~d-~~i~i~d~~~--~~~~~~~~~~~~~~i~~l~~~~~~---~---~l~tg~~dg~i~iwd~ 361 (536)
++++ ..|.||-... .+....-...+...|-+|+|-++. . .|++++-.|.+-+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7774 5566654332 221111111356678899987743 2 7888999999999888
No 423
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.67 E-value=12 Score=35.58 Aligned_cols=106 Identities=12% Similarity=-0.025 Sum_probs=52.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCce---eeeeCCCC---ceEEEEecCCCEEEEEeCC-----CcEEEEEcccCcc
Q 009373 169 SAKLLFTSGYD-----SIVRMWHLEDGFS---IASSKPLG---CTIRAVAADKKLLVAGGTD-----GFIHCWRAVEVLP 232 (536)
Q Consensus 169 ~~~~l~sgs~d-----g~v~iwd~~~~~~---~~~~~~~~---~~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~ 232 (536)
++.+++.|+.+ ..+..+|+.+.+- ...+..-. ....+...++.+.+.|+.. ..+..||+.+..-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 46677777764 3466677766542 12222111 1112223567777777642 3577777765431
Q ss_pred ceecccCcccccceEEeeC-CccCEEEEEEeCCEEEEEecCC----eEEEEeCCCceE
Q 009373 233 HLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWDM----TVRVWDRALLKC 285 (536)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg----~i~iwd~~~~~~ 285 (536)
. ....+.. ....-..+..++...+.|+.++ .+..||..+.+-
T Consensus 152 ~-----------~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 F-----------ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred e-----------ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 1 1111111 0111122344667777777654 356788876543
No 424
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.25 E-value=14 Score=35.23 Aligned_cols=93 Identities=10% Similarity=0.039 Sum_probs=46.0
Q ss_pred EeCCEEEEEec-----CCeEEEEeCCCceEeEe--eec--cccEEEEeecCCEEEEec-CC----cEEEEeCCCCcEEEE
Q 009373 261 LDLTRIYSGSW-----DMTVRVWDRALLKCLKV--LRH--SDWVYGLAPHDTTVASTS-GS----DVYIWDTNSGCLLTV 326 (536)
Q Consensus 261 ~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~--~~~--~~~v~~~~~~~~~l~~~~-d~----~i~i~d~~~~~~~~~ 326 (536)
+++...+.|+. ...+..||+.+.+-... +.. ......+..++++.+.|+ ++ .+.+||+.+.+-...
T Consensus 122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~ 201 (323)
T TIGR03548 122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV 201 (323)
T ss_pred ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC
Confidence 36666666664 23578888876543221 111 111122335666666665 42 367899888754322
Q ss_pred Eccc---cccc--eEEEEEeCCCCEEEEEcCC
Q 009373 327 VNGA---HVGN--TKSLARSHTGDFLFTGGED 353 (536)
Q Consensus 327 ~~~~---~~~~--i~~l~~~~~~~~l~tg~~d 353 (536)
-... .... ..+.....++.+++.|+.+
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 1100 0000 0111122356778888876
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.05 E-value=23 Score=37.70 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=24.9
Q ss_pred CccCEEEEEE-----eCCEEEEEecCCeEEEEeCCCc
Q 009373 252 HEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALL 283 (536)
Q Consensus 252 h~~~v~~l~~-----~~~~l~s~s~dg~i~iwd~~~~ 283 (536)
+...|..+.| ++..|+.-..|+++++||+...
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 3456777777 3568889999999999998653
No 426
>PRK10115 protease 2; Provisional
Probab=91.01 E-value=25 Score=37.62 Aligned_cols=192 Identities=10% Similarity=-0.055 Sum_probs=97.0
Q ss_pred ccEEEEEEecCCCEEEEEeC-----CCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEc
Q 009373 159 EAVLTVFVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRA 227 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~ 227 (536)
-.+..+.++|++++|+-+.. ...|++-|+.+|..+...-.......++.+|++.|+....+ ..|+.+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 34667889999998885532 34588999998864433222222346777888766555432 35667777
Q ss_pred ccCccceecccCcccccceEEeeCCccCEE-EEE-E-eCCEEEEEe---cCCeEEEEeCC--CceEeEeee-ccccEEEE
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHEGPIT-SLA-L-DLTRIYSGS---WDMTVRVWDRA--LLKCLKVLR-HSDWVYGL 298 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~-~-~~~~l~s~s---~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~ 298 (536)
.++.. .....+........ ... . ++.+++..+ .++.+.+++.. ++.....+. ..+....+
T Consensus 207 gt~~~-----------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (686)
T PRK10115 207 GTPAS-----------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSL 275 (686)
T ss_pred CCChh-----------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEE
Confidence 66521 11111222122222 111 2 556554433 34578888843 333222232 22233333
Q ss_pred e-ecCCEEEEec-C---CcEEEEeCCCCcEEEEEcccc-ccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373 299 A-PHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEII 362 (536)
Q Consensus 299 ~-~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~ 362 (536)
. ..+.+++... + ..|...++........+.... ...+..+.+. .+.++++...+|.-+++-+.
T Consensus 276 ~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 276 DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3 3334444433 2 234444555222222332222 2367778877 33566666677776665544
No 427
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.74 E-value=18 Score=35.62 Aligned_cols=142 Identities=11% Similarity=0.094 Sum_probs=82.1
Q ss_pred CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe------CCEEEEEecCCeEEEEeCCC-
Q 009373 210 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD------LTRIYSGSWDMTVRVWDRAL- 282 (536)
Q Consensus 210 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~~l~s~s~dg~i~iwd~~~- 282 (536)
...|++|+..|.++||+....... .....--..-..+|..+... ....++.=.-+.+.+|.+..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~---------~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~ 107 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQ---------PEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLV 107 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCC---------CccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEec
Confidence 468999999999999997443211 11122222345677777651 12233334456677776521
Q ss_pred -c--------eEeEeeeccc--cEEEEe------ec-CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC
Q 009373 283 -L--------KCLKVLRHSD--WVYGLA------PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 343 (536)
Q Consensus 283 -~--------~~~~~~~~~~--~v~~~~------~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~ 343 (536)
+ +....++|.- ....+. .. ..++.+-+ ||.+.+|+-+.-.....+. ..--...+.|.+.
T Consensus 108 ~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~ 185 (418)
T PF14727_consen 108 DGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPR 185 (418)
T ss_pred CCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeec
Confidence 1 1111222222 222222 22 24555555 9999999977654444432 2333445778888
Q ss_pred CCEEEEEcCCCcEEEEEcc
Q 009373 344 GDFLFTGGEDGAIHMYEII 362 (536)
Q Consensus 344 ~~~l~tg~~dg~i~iwd~~ 362 (536)
.+.|++++.+..+..|...
T Consensus 186 tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 186 TDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCEEEEecCceeEEEecHH
Confidence 8999999999999999864
No 428
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.23 E-value=19 Score=35.09 Aligned_cols=181 Identities=11% Similarity=0.060 Sum_probs=98.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeCCCC--ceEEE-EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccce
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--CTIRA-VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQ 246 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~~v~~-~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 246 (536)
+..++.+..||.|.-.|.+++..+....... ..+.. .......++.++.+|.++.+|..++.. .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~-------------~ 134 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTL-------------V 134 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcE-------------E
Confidence 3445566888999999999988765433221 11000 001134488899999888888866641 1
Q ss_pred EEeeCCc-cCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEE-------eecCCEEEEec--CCcEEE
Q 009373 247 FRLWEHE-GPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL-------APHDTTVASTS--GSDVYI 315 (536)
Q Consensus 247 ~~~~~h~-~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~~--d~~i~i 315 (536)
....... -.+..-.. ....++.++.++.+...|..+++.......... ... ..++..++... ++.+.-
T Consensus 135 W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~~~~~a 213 (370)
T COG1520 135 WSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYDGILYA 213 (370)
T ss_pred EEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCcceEEE
Confidence 1221122 01111112 344555555789999999999988877663322 111 12333333333 346777
Q ss_pred EeCCCCcEEEEEccccccceEE---EEEeC-----CCCEEEEEcCCCcEEEEEcccC
Q 009373 316 WDTNSGCLLTVVNGAHVGNTKS---LARSH-----TGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 316 ~d~~~~~~~~~~~~~~~~~i~~---l~~~~-----~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
+|..+|......+..+...-.. ..... .+.-+..++.+|.+...|..++
T Consensus 214 ~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G 270 (370)
T COG1520 214 LNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG 270 (370)
T ss_pred EEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC
Confidence 8888887776642111111110 00000 1123456677787888888877
No 429
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.07 E-value=21 Score=35.38 Aligned_cols=187 Identities=13% Similarity=0.176 Sum_probs=95.1
Q ss_pred EEEecCCCEEEEE-eCCC----cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC----
Q 009373 204 RAVAADKKLLVAG-GTDG----FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---- 272 (536)
Q Consensus 204 ~~~~~~~~~l~sg-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---- 272 (536)
.+++|++++++.+ +..| .+++.|+.++.. ..-.+... .-..+.| +++.|+....|
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------------l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------------LPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------------EEEEEEEE--ESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------------cCCccccc--ccceEEEeCCCCEEEEEEeCcccc
Confidence 4566999987755 3444 499999988731 01111111 1123788 54555544432
Q ss_pred -------CeEEEEeCCCceEe--Eeee--cccc-EEEE--eecCCEEEEec----C-CcEEEEeCCCC----cEEEEEcc
Q 009373 273 -------MTVRVWDRALLKCL--KVLR--HSDW-VYGL--APHDTTVASTS----G-SDVYIWDTNSG----CLLTVVNG 329 (536)
Q Consensus 273 -------g~i~iwd~~~~~~~--~~~~--~~~~-v~~~--~~~~~~l~~~~----d-~~i~i~d~~~~----~~~~~~~~ 329 (536)
..|+.|.+.+.... ..+. .... ...+ +.++++++... + ..+.+.|+..+ .....+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 24788888765432 3343 2222 3333 37888877544 2 45888899875 22333322
Q ss_pred ccccceEEEEEeCCCCEEEEEcC---CCcEEEEEcccCccccccceeeeccCCCC--CeEEEEEcCCeEEEEeC-CC--c
Q 009373 330 AHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFEFPWLVSAAG-DG--K 401 (536)
Q Consensus 330 ~~~~~i~~l~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~l~s~s~-dg--~ 401 (536)
...+....+... .+.+++.... .+.|.-.++...... .....+..|.. .+..+....++|+.... ++ .
T Consensus 275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~---~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA---EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR 350 (414)
T ss_dssp SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG---GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc---cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence 223333334333 3444443322 355666676665321 11113444544 56677766666555544 43 5
Q ss_pred EEEEECC
Q 009373 402 LSLIDVR 408 (536)
Q Consensus 402 i~vwd~~ 408 (536)
|+++++.
T Consensus 351 l~v~~~~ 357 (414)
T PF02897_consen 351 LRVYDLD 357 (414)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 7888887
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.88 E-value=4.8 Score=39.53 Aligned_cols=135 Identities=11% Similarity=0.024 Sum_probs=82.6
Q ss_pred EEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCC-------CEEEEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373 175 TSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK-------KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 247 (536)
Q Consensus 175 sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 247 (536)
.|+....+.--|++-|+.+.....|...++.+.|.. ..-++|-.+..|.-.|.+-..- .....
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN----------Ki~v~ 554 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN----------KIKVV 554 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC----------ceeee
Confidence 455556677778888998888888877777776532 2334455555555555432110 00000
Q ss_pred Eee--CCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEecCCcEEEEeCC
Q 009373 248 RLW--EHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTN 319 (536)
Q Consensus 248 ~~~--~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~ 319 (536)
... .......|..- ...+++.||..|-|++||.-..+....+. ....|..+. .+|.++++.+...+.+-|++
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 000 01112223222 67899999999999999965433333333 455565554 88999999998888888875
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.79 E-value=21 Score=37.59 Aligned_cols=109 Identities=9% Similarity=0.048 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCcEEEEEcccCcc--------------ccccceeeeccCCCCCeEEEEEc--C--CeEEEEeCCCcEEE
Q 009373 343 TGDFLFTGGEDGAIHMYEIINDCT--------------EANVLLVATWIPHTGPVNSLAFE--F--PWLVSAAGDGKLSL 404 (536)
Q Consensus 343 ~~~~l~tg~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~v 404 (536)
....|+.+.+||.|.+|.+..-.. ...+.+...+. -...+++++++ . ++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 446899999999999997632100 00111222222 24478999997 3 67777777788888
Q ss_pred EECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC---C---EEEEecCCCeEEEEeC
Q 009373 405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---D---RIVCGGEEGIVRIWNF 466 (536)
Q Consensus 405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~---~l~sg~~Dg~i~vW~~ 466 (536)
|-............ ...+.|..+..++-.+. . .|++++=.|.+-+|++
T Consensus 192 Faf~l~~~r~~~~~--------------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVP--------------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecccccccccc--------------ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 87654211111000 01144555544444322 2 7888999999999888
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.79 E-value=13 Score=32.48 Aligned_cols=156 Identities=20% Similarity=0.174 Sum_probs=84.1
Q ss_pred ecCCEEEEecCCcEEEEeCC--CCcEEEEEccccccceEEEEEeCCCCEEEEEcCC---C---cEEEE-EcccCcccccc
Q 009373 300 PHDTTVASTSGSDVYIWDTN--SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED---G---AIHMY-EIINDCTEANV 370 (536)
Q Consensus 300 ~~~~~l~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d---g---~i~iw-d~~~~~~~~~~ 370 (536)
..+.+++++++..|.+|++. ..+...+|. .-+.|..+.++..|++|+|--.+ . .+|+| +.+........
T Consensus 27 g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 27 GPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred CCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 33445555668889999988 345566664 56889999999999999985432 2 45665 22222111100
Q ss_pred ceeeeccC---------------------CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373 371 LLVATWIP---------------------HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 427 (536)
Q Consensus 371 ~~~~~~~~---------------------h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 427 (536)
..+ .+-| -..++.+++-.| .-|+.|+ ++++.+|.+....... ....+..
T Consensus 105 v~v-RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~------~~~~~lD 176 (215)
T PF14761_consen 105 VRV-RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQS------EKFSFLD 176 (215)
T ss_pred EEE-EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEec------ccccEEe
Confidence 110 1111 133455565544 3444444 4578999887532210 0001111
Q ss_pred eCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373 428 VEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 467 (536)
Q Consensus 428 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~ 467 (536)
+. .....+........+++-++|+|..+. -.+++..+.
T Consensus 177 Fe-~~l~~~~~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 177 FE-RSLIDHIDNFKPTQVAICEGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred ch-hhhhheecCceEEEEEEEeeEEEEecC-CEEEEEEEe
Confidence 11 111122233445667777888888874 457776653
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=13 Score=32.26 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=72.2
Q ss_pred EecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEc----cccccceEEEEEeCC
Q 009373 269 GSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN----GAHVGNTKSLARSHT 343 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~----~~~~~~i~~l~~~~~ 343 (536)
.-.||....+|.++.+++..+..++.=..+..++.-++.+. ..+++.-|..+.....++. ...-..++-+.|- +
T Consensus 107 Tw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-d 185 (262)
T COG3823 107 TWKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-D 185 (262)
T ss_pred EeccceeEEEChHHhhhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-c
Confidence 34577888999999999999988888888887777666666 5778888887654433332 1111222333332 3
Q ss_pred CCEEEEEcCCCcEEEEEcccCccccc------cceeeeccCCCCCeEEEEEcC---CeEEEE
Q 009373 344 GDFLFTGGEDGAIHMYEIINDCTEAN------VLLVATWIPHTGPVNSLAFEF---PWLVSA 396 (536)
Q Consensus 344 ~~~l~tg~~dg~i~iwd~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~---~~l~s~ 396 (536)
|...|-.-.+..|...|..+++...- ...+..-..|....+.+++.| .++++|
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44444333333444444444421100 011122234566778899976 355555
No 434
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=89.36 E-value=0.34 Score=46.27 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=32.3
Q ss_pred ccCCcHHHHHHHhcCCC-hhhHHHHhhhhHHHHHHhcC
Q 009373 64 ITDLPPALISEILNCLD-PKELGIVSCVSPILHRLASD 100 (536)
Q Consensus 64 l~~Lp~ei~~~I~~~L~-~~~l~~~~~v~~~~~~l~~~ 100 (536)
-+.||+|++..|...|+ .-|+.+++.||+.||..+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 35799999999999995 44999999999999987763
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.80 E-value=2.4 Score=37.72 Aligned_cols=70 Identities=9% Similarity=0.110 Sum_probs=45.8
Q ss_pred EeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc--------CCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCc
Q 009373 340 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--------PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 340 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~ 409 (536)
+..++.+|++-+.+|.+++||+.+.+.......+..+- .....|..+..+. ...+..-.+|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 44568899999999999999999885433221121111 3556777777753 3333344567889998653
No 436
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.78 E-value=33 Score=35.76 Aligned_cols=158 Identities=11% Similarity=0.176 Sum_probs=94.3
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCC-CCc------eEEEEe--cCCCEEEEEeC-CC---cE
Q 009373 158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKP-LGC------TIRAVA--ADKKLLVAGGT-DG---FI 222 (536)
Q Consensus 158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~-~~~------~v~~~~--~~~~~l~sg~~-dg---~i 222 (536)
.+.|..+.|.+++..+++.-.+|.|.+||...+. .+..+.. +.. -|..+. ....++++-+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6788999999999999999999999999993332 1111111 111 111111 11334444443 32 24
Q ss_pred EEEEcccCccceecccCcccccceEEee-----CCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecc-----
Q 009373 223 HCWRAVEVLPHLFDISGSEKQNTQFRLW-----EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS----- 292 (536)
Q Consensus 223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----- 292 (536)
+++.+.... .....+. .+...=..+++..+.|+-- .+++|.+|++...+..+++.-.
T Consensus 209 kL~~l~~~~------------~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~ 275 (670)
T PF10395_consen 209 KLISLSNES------------SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDK 275 (670)
T ss_pred EEEEeccCC------------cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhcc
Confidence 445441111 1111221 1222223445544444443 6789999999988877776622
Q ss_pred --ccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEc
Q 009373 293 --DWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVN 328 (536)
Q Consensus 293 --~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 328 (536)
..+.++. +..+.+..+.++.|++.|+.-...+..+.
T Consensus 276 ~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 276 ESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 3566666 88889999999999999998766665554
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=8.3 Score=42.61 Aligned_cols=137 Identities=15% Similarity=0.287 Sum_probs=83.6
Q ss_pred EecCCeEEEEeCCCceEeEeee-ccccEEEEe---ec--------CCEEEEecCCcEEEEeCC----CCcEE-----EEE
Q 009373 269 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PH--------DTTVASTSGSDVYIWDTN----SGCLL-----TVV 327 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~--------~~~l~~~~d~~i~i~d~~----~~~~~-----~~~ 327 (536)
.+-|..+.+|+.+++.....+. ....|..+. |. ..+|+.++.-.|.++-+. ++..- ..+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 4668999999999876666665 444555543 32 235566666666665332 22111 111
Q ss_pred ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc-----------------cc-cceeeecc-CCCCCeEEEEE
Q 009373 328 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE-----------------AN-VLLVATWI-PHTGPVNSLAF 388 (536)
Q Consensus 328 ~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-----------------~~-~~~~~~~~-~h~~~v~~l~~ 388 (536)
. .....|+++....+|+.+++| .|| .+|.+.-.... .. +..+..+. .+..+|..+..
T Consensus 175 ~-~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 175 S-VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred e-cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 1 124568888877888877666 555 45554321110 00 01122223 56789999999
Q ss_pred cC--CeEEEEeCCCcEEEEECCc
Q 009373 389 EF--PWLVSAAGDGKLSLIDVRK 409 (536)
Q Consensus 389 ~~--~~l~s~s~dg~i~vwd~~~ 409 (536)
+. +.+++-+..|+|.+||+..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 75 7899999999999999976
No 438
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.50 E-value=10 Score=39.28 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=69.6
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEe----cCCCEEEEEeCCCcEEEEEcccCccc
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA----ADKKLLVAGGTDGFIHCWRAVEVLPH 233 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~----~~~~~l~sg~~dg~i~vwd~~~~~~~ 233 (536)
....-+.-+.-++..++-+....+.|||...+.....-. .....|.++. |+++.+++.+....|.++.-..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R---- 105 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR---- 105 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc----
Confidence 334444444445555555556689999998876433221 3456676664 8999999999999999986421
Q ss_pred eecc-cCcccccc--eEEeeCCc-cCEEEEEE-eCCEEEEEecCCeEEEEeC
Q 009373 234 LFDI-SGSEKQNT--QFRLWEHE-GPITSLAL-DLTRIYSGSWDMTVRVWDR 280 (536)
Q Consensus 234 ~~~~-~~~~~~~~--~~~~~~h~-~~v~~l~~-~~~~l~s~s~dg~i~iwd~ 280 (536)
++. ...+.... ...+..|+ .+|.+..| .++.++.|+ +..+.|+|-
T Consensus 106 -~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 106 -YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred -hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 110 01111222 22334555 68889999 555555555 367888874
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.06 E-value=12 Score=29.88 Aligned_cols=109 Identities=16% Similarity=0.084 Sum_probs=64.8
Q ss_pred EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---e----CCEEEEEecCCeEEEEeCCCce
Q 009373 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---D----LTRIYSGSWDMTVRVWDRALLK 284 (536)
Q Consensus 212 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~----~~~l~s~s~dg~i~iwd~~~~~ 284 (536)
.|+.++.-|.|.|.+.......... ......+..-...|++++- + .+.|+.|+. .++..||+....
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~------~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~ 84 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGR------QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS 84 (136)
T ss_pred eEEEEecCCEEEEECCCcccccccc------ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence 4555566666666654332110000 1111222234556777765 2 356776664 688999998776
Q ss_pred EeEeeeccccEEEEe------ecCCEEEEecCCcEEEEeCCCCcEEEEE
Q 009373 285 CLKVLRHSDWVYGLA------PHDTTVASTSGSDVYIWDTNSGCLLTVV 327 (536)
Q Consensus 285 ~~~~~~~~~~v~~~~------~~~~~l~~~~d~~i~i~d~~~~~~~~~~ 327 (536)
.+....-++.|.++. ....++++|++..|.-||..-.+...+.
T Consensus 85 d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 85 DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 665555567777765 2566777888888888887766655443
No 440
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.67 E-value=25 Score=33.12 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=60.8
Q ss_pred EEEeecCCEEEEec--CCcEEEEeCCC--C----cEEEEEccccccceEEEEEeCCCCEEEEEcCCC-cEEEEEcccCcc
Q 009373 296 YGLAPHDTTVASTS--GSDVYIWDTNS--G----CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCT 366 (536)
Q Consensus 296 ~~~~~~~~~l~~~~--d~~i~i~d~~~--~----~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~i~iwd~~~~~~ 366 (536)
.+++|+++.+..+. .+.|.-|++.. + +..........+..-.++...+|.+.+++..+| .|.+|+.. +
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-- 244 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-- 244 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C--
Confidence 34558998777766 47788887752 1 211222222445566777888888775555554 89999988 5
Q ss_pred ccccceeeeccCCCCCeEEEEEcC---CeEEEEeC
Q 009373 367 EANVLLVATWIPHTGPVNSLAFEF---PWLVSAAG 398 (536)
Q Consensus 367 ~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~ 398 (536)
+.+....-....+++++|-+ +.|+..+.
T Consensus 245 ----~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 245 ----KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ----cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 45665555667888999964 45544443
No 441
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.57 E-value=46 Score=36.08 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=20.4
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC
Q 009373 167 LASAKLLFTSGYDSIVRMWHLEDG 190 (536)
Q Consensus 167 ~~~~~~l~sgs~dg~v~iwd~~~~ 190 (536)
...|+.|..|+.||.+.+|.+.+.
T Consensus 23 a~~~~~l~vGt~~G~L~lY~i~~~ 46 (877)
T KOG2063|consen 23 AAYGNHLYVGTRDGDLYLYSIYER 46 (877)
T ss_pred HHhCCEEEEEcCCCcEEEEecccc
Confidence 345889999999999999998654
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.85 E-value=18 Score=35.99 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=23.0
Q ss_pred cceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373 333 GNTKSLARSHTGDFLFTGGEDGAIHMYE 360 (536)
Q Consensus 333 ~~i~~l~~~~~~~~l~tg~~dg~i~iwd 360 (536)
-.|..+..++.|..++-.+.+|.+.++=
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 3577888999999999999999776654
No 443
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.40 E-value=8 Score=37.46 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=101.8
Q ss_pred eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-eee-CCCCce----EE---EEecCCCEEEEEeCCCc
Q 009373 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASS-KPLGCT----IR---AVAADKKLLVAGGTDGF 221 (536)
Q Consensus 151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~-~~~~~~----v~---~~~~~~~~l~sg~~dg~ 221 (536)
++.+..--..|..+-..|||+.|+.-+. .++.++++.+.... +.+ ....+. |. .+-..|..+++++.||.
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 4445666677888889999998876665 68889998764321 111 111111 11 11245667899999999
Q ss_pred EEEE-EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEE
Q 009373 222 IHCW-RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVY 296 (536)
Q Consensus 222 i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~ 296 (536)
|.-| |+..+. +.....++.+.-...++..+.. +.+-+++-+..|++.++.....+.+-.-. ....+.
T Consensus 292 vsQWFdvr~~~--------~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~ 363 (733)
T COG4590 292 VSQWFDVRRDG--------QPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLV 363 (733)
T ss_pred eeeeeeeecCC--------CCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCccee
Confidence 9888 333221 1111222222222344544544 33568888899999888765544433222 455667
Q ss_pred EEeecCCEEEEecCCcEEEEeCCCCcE
Q 009373 297 GLAPHDTTVASTSGSDVYIWDTNSGCL 323 (536)
Q Consensus 297 ~~~~~~~~l~~~~d~~i~i~d~~~~~~ 323 (536)
.++|++.++++-..|.++++.+++..+
T Consensus 364 ~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheeecCCceEEEEecCCCC
Confidence 788999999998899999998877544
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=6.3 Score=43.45 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=96.6
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe---cCC-------CEEEEEeCCCcEEEEE
Q 009373 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADK-------KLLVAGGTDGFIHCWR 226 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~---~~~-------~~l~sg~~dg~i~vwd 226 (536)
|...=..|-+-|.=+.... +-|+.+.+|+.+++.....+.+....|..+. |.. ++++.-+.--.|.++-
T Consensus 77 ~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg 155 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG 155 (1311)
T ss_pred CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence 3333344444444232222 4588999999999888888877777776654 433 2444444455566665
Q ss_pred cccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEE
Q 009373 227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV 305 (536)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l 305 (536)
+.-..... +........++....-.|.++.. +.+.++-++.|| .+|.+.-.. ..++-..
T Consensus 156 V~~~~~~~----~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~------~~gWf~~-------- 215 (1311)
T KOG1900|consen 156 VSFDEFTG----ELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQA------EDGWFGS-------- 215 (1311)
T ss_pred EEeccccC----cccccccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEec------cCchhhc--------
Confidence 43221000 00001111233334556788886 555555566666 455431000 0000000
Q ss_pred EEecCCcEEEEeCCCCc------EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373 306 ASTSGSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 365 (536)
Q Consensus 306 ~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~ 365 (536)
..+..++..+. .+..+...+..+|..+......+.+.+=++.|+|.+||+....
T Consensus 216 ------rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 216 ------RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ------ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 01111111100 0111113477899999999999999999999999999997743
No 445
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.37 E-value=21 Score=37.05 Aligned_cols=165 Identities=12% Similarity=0.074 Sum_probs=83.9
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 236 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 236 (536)
...-++++.-+|.+.-++.+..||.|++|+.......+.... ..+-..+...+.-|++...|..+.-|.-..-....|+
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhgl~~~tsdrr~la~~~dgvvqqqfd 91 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHGLVTATSDRRALAWKEDGVVQQQFD 91 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccceEEEeccchhheeeccCcchhhcc
Confidence 345577888899999999999999999999865543211110 1111122233445777778888877764332222222
Q ss_pred ccCcccccceEEee---------CCccCEEEEEE-------eCCEEEEEecCCeEEEEeCCCceEeEeeecccc-EEEEe
Q 009373 237 ISGSEKQNTQFRLW---------EHEGPITSLAL-------DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-VYGLA 299 (536)
Q Consensus 237 ~~~~~~~~~~~~~~---------~h~~~v~~l~~-------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~~~ 299 (536)
............+- .--+.|..+.. .+++=.+--.-..|.+-|+.++.....+.|.+. |--+.
T Consensus 92 yndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~aidelk 171 (1636)
T KOG3616|consen 92 YNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDELK 171 (1636)
T ss_pred ccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcchhhhh
Confidence 22111110000000 01122322222 111112222234566666666665555554432 22222
Q ss_pred --ecCCEEEEecCCcEEEEeCCCCc
Q 009373 300 --PHDTTVASTSGSDVYIWDTNSGC 322 (536)
Q Consensus 300 --~~~~~l~~~~d~~i~i~d~~~~~ 322 (536)
-..+++++-...+|.+=|+++.+
T Consensus 172 ilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 172 ILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred hccccceEEeeccccEEEeecccch
Confidence 34566776667888888887754
No 446
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=86.33 E-value=35 Score=33.44 Aligned_cols=231 Identities=16% Similarity=0.078 Sum_probs=129.6
Q ss_pred cEEEEEEecCCCEEE-EEeCCCcEEEEECCCCceeeeeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCcccee
Q 009373 160 AVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLF 235 (536)
Q Consensus 160 ~V~~v~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~ 235 (536)
....+...+++..+. +-.....+...+............ ....-.++.+.+. ..++...+..|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--- 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--- 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce---
Confidence 344566777774333 333333455555442211111111 1122345556666 455555568899998654321
Q ss_pred cccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec---CCeEEEEeCCCceEeEeeecc-cc-EEEEeecCCEEEEe
Q 009373 236 DISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLKCLKVLRHS-DW-VYGLAPHDTTVAST 308 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~-~~-v~~~~~~~~~l~~~ 308 (536)
......+. ....+++ +++.++.+.. ++++.+.|..+.+......-. .+ -..+.|++..++.+
T Consensus 109 ---------~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~ 177 (381)
T COG3391 109 ---------LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVT 177 (381)
T ss_pred ---------eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEE
Confidence 11111122 3344555 6666655544 789999999999988886522 22 23344899977666
Q ss_pred c--CCcEEEEeCCCCcEEE-EEc--cccccceEEEEEeCCCCEEEEEcCC---CcEEEEEcccCccccccceeee-ccCC
Q 009373 309 S--GSDVYIWDTNSGCLLT-VVN--GAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVAT-WIPH 379 (536)
Q Consensus 309 ~--d~~i~i~d~~~~~~~~-~~~--~~~~~~i~~l~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~-~~~h 379 (536)
. ++.+.++|........ ... ..-......+.++|+|..+.+.... +.+...|..++. .... ....
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------v~~~~~~~~ 251 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------VTATDLPVG 251 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce------EEEeccccc
Confidence 6 7899999977766553 100 1123345678899999966554443 588888888773 2221 1111
Q ss_pred CCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcc
Q 009373 380 TGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL 410 (536)
Q Consensus 380 ~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~ 410 (536)
......+..+| ..+.+.. ..+.+.+.|..+.
T Consensus 252 ~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 252 SGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred cCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 11234455554 5665553 3478888888764
No 447
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.31 E-value=29 Score=32.52 Aligned_cols=229 Identities=11% Similarity=0.043 Sum_probs=98.2
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceeeeeC--CC---CceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009373 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFSIASSK--PL---GCTIRAVAADKKLLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~-~~~~~~~~~~--~~---~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 230 (536)
-...+..|.|.....-+++|. .++| +.. +.|+.-.... .. .....++.+.+.....++..|.| +...+.+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~l-l~T~DgG 90 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLL-LHTTDGG 90 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEE-EEESSTT
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceE-EEecCCC
Confidence 345789999985555566554 4543 333 3333222211 11 12344555444444444555543 2222222
Q ss_pred ccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe--ecCCEE
Q 009373 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTV 305 (536)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l 305 (536)
.....+..-..-.+....+.. +......++..|.|..= .+.++.-..+. ....+..+. ++++++
T Consensus 91 ----------~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~v 159 (302)
T PF14870_consen 91 ----------KTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYV 159 (302)
T ss_dssp ----------SS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EE
T ss_pred ----------CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEE
Confidence 111111110111222333333 55555555555554332 22232222221 345566655 889999
Q ss_pred EEecCCcE-EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc-ceeeeccCCCCCe
Q 009373 306 ASTSGSDV-YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV-LLVATWIPHTGPV 383 (536)
Q Consensus 306 ~~~~d~~i-~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~h~~~v 383 (536)
+++..|.+ .-||.-...-.. ........|.++.|.|++.+.+++ ..|.|++=+..... ... +.+.........+
T Consensus 160 avs~~G~~~~s~~~G~~~w~~-~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ 235 (302)
T PF14870_consen 160 AVSSRGNFYSSWDPGQTTWQP-HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGI 235 (302)
T ss_dssp EEETTSSEEEEE-TT-SS-EE-EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE--EEE---B-TTSS--S-E
T ss_pred EEECcccEEEEecCCCccceE-EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc--cccccccCCcccCceee
Confidence 99987665 467754322111 112356789999999998866654 88888887722211 000 1111122234457
Q ss_pred EEEEEcC-CeEEEEeCCCcEEE
Q 009373 384 NSLAFEF-PWLVSAAGDGKLSL 404 (536)
Q Consensus 384 ~~l~~~~-~~l~s~s~dg~i~v 404 (536)
..++|.+ +.+.+++..|.+.+
T Consensus 236 ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp EEEEESSSS-EEEEESTT-EEE
T ss_pred EEEEecCCCCEEEEeCCccEEE
Confidence 8999975 66777777776654
No 448
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.26 E-value=6.4 Score=38.61 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=57.1
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe----cCC---------------C-
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADK---------------K- 211 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~----~~~---------------~- 211 (536)
..|......+.++..+|++++.|+...=|.|.++|+.++..++-+++-...-..+. ... .
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 44555666789999999999999988889999999999988877776554333322 111 1
Q ss_pred -EEEEEeCCCcEEEEEcccC
Q 009373 212 -LLVAGGTDGFIHCWRAVEV 230 (536)
Q Consensus 212 -~l~sg~~dg~i~vwd~~~~ 230 (536)
+++-+-.-|.|.||.++++
T Consensus 381 ~LvIyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQG 400 (415)
T ss_pred EEEEEeccCCeEEEEecCCC
Confidence 2344566788999988765
No 449
>PLN02153 epithiospecifier protein
Probab=85.79 E-value=34 Score=32.85 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCceeeeeCCC----Cc---eEEEEecCCCEEEEEeCC-----CcEEEEEccc
Q 009373 169 SAKLLFTSGYD-------SIVRMWHLEDGFSIASSKPL----GC---TIRAVAADKKLLVAGGTD-----GFIHCWRAVE 229 (536)
Q Consensus 169 ~~~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~~----~~---~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~ 229 (536)
++.+++.|+.+ ..+.+||+.+.+-.. .... .. .......++.+++.|+.+ ..+.+||+.+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSI-APANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEE-cCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence 45666667653 357788887653221 1111 10 122334567777787754 3467777765
Q ss_pred C
Q 009373 230 V 230 (536)
Q Consensus 230 ~ 230 (536)
.
T Consensus 111 ~ 111 (341)
T PLN02153 111 N 111 (341)
T ss_pred C
Confidence 4
No 450
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.68 E-value=35 Score=32.85 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCcEEEEEccccc-cceEEEEEeCCCCEEEEEcCC
Q 009373 311 SDVYIWDTNSGCLLTVVNGAHV-GNTKSLARSHTGDFLFTGGED 353 (536)
Q Consensus 311 ~~i~i~d~~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~tg~~d 353 (536)
..+.+||..+++-...-..... ..-.+++ ..++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 3588899887654332111111 1112222 2356777777653
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.92 E-value=2 Score=45.09 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=94.0
Q ss_pred CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccccc-ceeeeccCCCCCeEEEE
Q 009373 310 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANV-LLVATWIPHTGPVNSLA 387 (536)
Q Consensus 310 d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~l~ 387 (536)
.+.+++-+..+......+..+..+.+-.+.|.... ..+. -.-|.+.|||+.--.-.-.. ..+.....-...+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 34455555443321112223455666666664311 1111 33467889987642111111 12333334445556666
Q ss_pred EcC-----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEE
Q 009373 388 FEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVR 462 (536)
Q Consensus 388 ~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~ 462 (536)
|.| -++..+-.++.|++.+..+..+.....++..... ...+...-..+-+++++|..++.++.||.++
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d-------~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTD-------MAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCccc-------HHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 754 5777777889999887765432111111111100 0111112233455788888999999999999
Q ss_pred EEeCCc-hhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373 463 IWNFSQ-AFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK 513 (536)
Q Consensus 463 vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 513 (536)
+|.+.- |... .....+|.|++++--+|+.+.+.
T Consensus 261 f~Qiyi~g~~~------------------~rclhewkphd~~p~vC~lc~~~ 294 (1283)
T KOG1916|consen 261 FYQIYITGKIV------------------HRCLHEWKPHDKHPRVCWLCHKQ 294 (1283)
T ss_pred eeeeeeecccc------------------HhhhhccCCCCCCCceeeeeccc
Confidence 998752 2211 12456788999888888885444
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.63 E-value=25 Score=34.81 Aligned_cols=133 Identities=16% Similarity=0.162 Sum_probs=79.0
Q ss_pred EEEecCCeEEEEeCCCceEeEeee-ccccEEEEee--------cCCEEEEecCCcEEEEeCCCCc-EEEEEccccccceE
Q 009373 267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAP--------HDTTVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTK 336 (536)
Q Consensus 267 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~--------~~~~l~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~i~ 336 (536)
..|+....++--|++.|+.+.... +.+.+....| +...|+.-++..|.-.|.+... .+.... .....+
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e--sKdY~t 561 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE--SKDYKT 561 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee--ehhccc
Confidence 345555667777888888888877 4444333333 3456777778777777876532 222211 111122
Q ss_pred EEEEe----CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECC
Q 009373 337 SLARS----HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 337 ~l~~~----~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 408 (536)
.-.|+ ....++++|+..|-|++||--.. ..-..+.+-...|..+... +.++++.+. ..+.+-|++
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~------rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGK------RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhhcc------hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 22222 23468999999999999995443 2223344556677777764 456555544 467777775
No 453
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.32 E-value=34 Score=31.50 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=80.1
Q ss_pred eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009373 152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 228 (536)
+.+.|-...|.++.|+|+.+.|++......-.|+=..+|+.+.++.- +........-++.+.++--.++.+.++.+.
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 34556667799999999999999888888888888888988887643 222333444556666666677888887765
Q ss_pred cCccceecccCcccccceEEee--CC-ccCEEEEEE--eCCEEEEEecCCeEEEEeCC
Q 009373 229 EVLPHLFDISGSEKQNTQFRLW--EH-EGPITSLAL--DLTRIYSGSWDMTVRVWDRA 281 (536)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~--~h-~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~ 281 (536)
.....+. . ......+. .+ +.....++| ....|+.+-.-.-+.||...
T Consensus 159 ~~t~~~~-~-----~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 159 ADTTVIS-A-----KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCccEEe-c-----cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 5421110 0 00011111 22 556778888 34567777777777777665
No 454
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.30 E-value=41 Score=32.41 Aligned_cols=62 Identities=21% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCCEEEEEeCC-CcEEEEECCCC----ceeeeeCC-CCceEEEEecCCCEEEEEeCC-----------CcEEEEEcccC
Q 009373 169 SAKLLFTSGYD-SIVRMWHLEDG----FSIASSKP-LGCTIRAVAADKKLLVAGGTD-----------GFIHCWRAVEV 230 (536)
Q Consensus 169 ~~~~l~sgs~d-g~v~iwd~~~~----~~~~~~~~-~~~~v~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~ 230 (536)
++.+.+.|+.. ..+..+|+... ..+..+.. ..........++.+.+.|+.+ ..+..||..+.
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 45555555542 45666776322 12222221 111222334677777888753 24666776554
No 455
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.08 E-value=52 Score=33.49 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=85.1
Q ss_pred ccCEEEEEE-eCCEEEEEe---cCCeEEEEeCCCceEeEeeeccccEEEEe--e-----cCCEEEEecCCcEEEEeCC--
Q 009373 253 EGPITSLAL-DLTRIYSGS---WDMTVRVWDRALLKCLKVLRHSDWVYGLA--P-----HDTTVASTSGSDVYIWDTN-- 319 (536)
Q Consensus 253 ~~~v~~l~~-~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~-----~~~~l~~~~d~~i~i~d~~-- 319 (536)
-.+|..++| ||+.++-.. .+|.+++=| .+.+..|+ .|..++ | ...+||.-....|.||.+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 357889999 887655432 344444433 22333443 345554 1 2356777778999999875
Q ss_pred ---CCcEEEEEc----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--C
Q 009373 320 ---SGCLLTVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--F 390 (536)
Q Consensus 320 ---~~~~~~~~~----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~ 390 (536)
+++.+..-. ....--...+.|+|....|++-.....-.+++++... ..+..-....+.|.|.+|. +
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~-----srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS-----SRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC-----ceEEEeccCCceEEEEEecCcC
Confidence 223322211 1111123467799999888776666655677776653 2232223567889999994 4
Q ss_pred CeEE-EEeCCCcEEEEECCc
Q 009373 391 PWLV-SAAGDGKLSLIDVRK 409 (536)
Q Consensus 391 ~~l~-s~s~dg~i~vwd~~~ 409 (536)
.+|+ +.+..=.-++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 4444 444445578898543
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.65 E-value=18 Score=34.59 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=34.5
Q ss_pred ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee-eeccCCCCCeEEEEEcC
Q 009373 334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV-ATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~ 390 (536)
..++|+|.|+|.++++ ...|.|++++ ..+.....+..+ ............++++|
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence 4678999999987665 5599999999 333211111111 12234566889999998
No 457
>PLN02153 epithiospecifier protein
Probab=83.06 E-value=45 Score=32.02 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=52.1
Q ss_pred EeCCEEEEEecC-------CeEEEEeCCCceEeEeeec---cc----cEEEEeecCCEEEEec-C-----CcEEEEeCCC
Q 009373 261 LDLTRIYSGSWD-------MTVRVWDRALLKCLKVLRH---SD----WVYGLAPHDTTVASTS-G-----SDVYIWDTNS 320 (536)
Q Consensus 261 ~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~---~~----~v~~~~~~~~~l~~~~-d-----~~i~i~d~~~ 320 (536)
.++..++.|+.+ ..+.+||+.+.+-...-.. .. ....+..++.+++.|+ + ..+.+||+.+
T Consensus 31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence 355666666653 3577888876543221111 11 1222335666666665 2 3588899987
Q ss_pred CcEEEEEcc-----ccccceEEEEEeCCCCEEEEEcCC-----------CcEEEEEcccC
Q 009373 321 GCLLTVVNG-----AHVGNTKSLARSHTGDFLFTGGED-----------GAIHMYEIIND 364 (536)
Q Consensus 321 ~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~d-----------g~i~iwd~~~~ 364 (536)
.+-...-.. .....-.+++ .-++++.+.|+.+ ..+.+||+.+.
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~ 169 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG 169 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence 654321110 0011111222 2345667777754 24777887765
No 458
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=82.47 E-value=62 Score=33.17 Aligned_cols=231 Identities=12% Similarity=0.047 Sum_probs=111.7
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCC-ccCEEEEEE-eCC--EEEEEecCC--eEEEEeCC
Q 009373 208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL-DLT--RIYSGSWDM--TVRVWDRA 281 (536)
Q Consensus 208 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~-~~~--~l~s~s~dg--~i~iwd~~ 281 (536)
.++..++.+..+|.+....+..... .......+. .....++++ +.+ +++.||.-| .+.-|...
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~-----------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~ 288 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGG-----------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS 288 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEE-----------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCC-----------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC
Confidence 4577899999999999887754310 112222222 445567777 666 888888644 55555655
Q ss_pred CceEeEeeeccccEEEEee-----c-C-------CEEEEec---CCcEEEEeCCCCcEEE--E---EccccccceEEEEE
Q 009373 282 LLKCLKVLRHSDWVYGLAP-----H-D-------TTVASTS---GSDVYIWDTNSGCLLT--V---VNGAHVGNTKSLAR 340 (536)
Q Consensus 282 ~~~~~~~~~~~~~v~~~~~-----~-~-------~~l~~~~---d~~i~i~d~~~~~~~~--~---~~~~~~~~i~~l~~ 340 (536)
..+.+..+..-++|..+.- . . +++++++ +|.+++.. .|-... . ........++.+..
T Consensus 289 ~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~ 366 (504)
T PF10433_consen 289 NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKL 366 (504)
T ss_dssp SEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-S
T ss_pred CcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeee
Confidence 5566666777778887761 1 1 3344443 47787763 332222 1 11111334455543
Q ss_pred eC-CCCEEEEEcCCCcEEEEEcccCccccccceee--eccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCC
Q 009373 341 SH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVA--TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPT 417 (536)
Q Consensus 341 ~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 417 (536)
.. ++.+|+.+..+ .-+++.+...........+. .+......+.+-.+..+.++=....+ |++.+.........
T Consensus 367 ~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~-i~l~~~~~~~~~~~-- 442 (504)
T PF10433_consen 367 SSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKG-IRLIDLEDGKLTQE-- 442 (504)
T ss_dssp SSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSE-EEEEESSSTSEEEE--
T ss_pred cCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCe-EEEEECCCCeEEEE--
Confidence 32 24566666554 45566664200001111111 12222233333333345555444443 66776544211100
Q ss_pred CCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhh
Q 009373 418 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 471 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~ 471 (536)
........|.+.+..+.+++.+-.+|.+..+.+.....
T Consensus 443 ----------------w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 443 ----------------WKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp ----------------EE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEE
T ss_pred ----------------EeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCce
Confidence 00113345666677777777777788999998876543
No 459
>PLN02193 nitrile-specifier protein
Probab=82.18 E-value=61 Score=32.87 Aligned_cols=148 Identities=14% Similarity=-0.001 Sum_probs=71.4
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCceeeeeCC-----C-C-ceEEEEecCCCEEEEEeCCC-----cEEEEEccc
Q 009373 169 SAKLLFTSGYD-------SIVRMWHLEDGFSIASSKP-----L-G-CTIRAVAADKKLLVAGGTDG-----FIHCWRAVE 229 (536)
Q Consensus 169 ~~~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~-----~-~-~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~ 229 (536)
++.+++.|+.+ ..+.+||+.+.+-.. ... . . ........++.+.+.|+.++ .+.++|+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 35566666643 247778887653221 111 1 0 11122335667777777653 577788765
Q ss_pred CccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCC-----eEEEEeCCCceEeEeee------ccccEEEE
Q 009373 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLR------HSDWVYGL 298 (536)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~------~~~~v~~~ 298 (536)
..-........ . ......-.....++..++.|+.++ .+..||+.+.+-...-. ........
T Consensus 254 ~~W~~l~~~~~---~-----P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~ 325 (470)
T PLN02193 254 NEWKLLTPVEE---G-----PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE 325 (470)
T ss_pred CEEEEcCcCCC---C-----CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence 43211100000 0 000111122233566666776543 46778877654322111 01111122
Q ss_pred eecCCEEEEec-C----CcEEEEeCCCCcEEE
Q 009373 299 APHDTTVASTS-G----SDVYIWDTNSGCLLT 325 (536)
Q Consensus 299 ~~~~~~l~~~~-d----~~i~i~d~~~~~~~~ 325 (536)
..++++++.++ + ..+.+||+.+.+...
T Consensus 326 ~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred EECCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence 35666666655 3 468999998876543
No 460
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.13 E-value=84 Score=34.45 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=71.0
Q ss_pred CCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEeecCCEEEEec-CCcE--EEEeCCCCcEE
Q 009373 251 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS-GSDV--YIWDTNSGCLL 324 (536)
Q Consensus 251 ~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-d~~i--~i~d~~~~~~~ 324 (536)
.-.+.|.+++--.+++++| ....+++||+...+.++... .+..|..+...+..++.|. ...+ ..|+...++.+
T Consensus 933 ~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred CCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Confidence 3456777777755555544 45799999998877766554 3667788888888888877 4444 44565555555
Q ss_pred EEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373 325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII 362 (536)
Q Consensus 325 ~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~ 362 (536)
......-...++++.+- |...++.|..=|.+.+-.+.
T Consensus 1012 ~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 54444445566766655 44567777777776665543
No 461
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.52 E-value=92 Score=34.89 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=26.0
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 009373 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLED 189 (536)
Q Consensus 159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~ 189 (536)
.....++|+|...++|.|..+|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3455778999999999999999999998653
No 462
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.50 E-value=56 Score=31.97 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=29.9
Q ss_pred CCCEEEEEeC-CCcEEEEECCCC----ceeeeeCC-CCceEEEEecCCCEEEEEeCCC-----------cEEEEEcccC
Q 009373 169 SAKLLFTSGY-DSIVRMWHLEDG----FSIASSKP-LGCTIRAVAADKKLLVAGGTDG-----------FIHCWRAVEV 230 (536)
Q Consensus 169 ~~~~l~sgs~-dg~v~iwd~~~~----~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg-----------~i~vwd~~~~ 230 (536)
++.+.+.|+. +..+.++|+... ..+..+.. ..........++.+.+.|+.+. .+..||..+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 3454444443 445677777532 11122211 1112223345677777777542 4666776554
No 463
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.25 E-value=31 Score=34.40 Aligned_cols=27 Identities=11% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEecC--CEEEEecCCCeEEEEeCCc
Q 009373 442 LLSVDIGA--DRIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 442 v~~~~~~~--~~l~sg~~Dg~i~vW~~~~ 468 (536)
+..+..++ +.+++...+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 66666554 4899999999999999974
No 464
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=80.56 E-value=59 Score=31.63 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=23.9
Q ss_pred cccccEEEEEecCC-EEEEecCCCeEEEEeCCc
Q 009373 437 GFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQ 468 (536)
Q Consensus 437 ~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~ 468 (536)
.....+..++..|+ .+++=+.+..|.+|...+
T Consensus 428 s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~~ 460 (465)
T KOG2714|consen 428 SAGGLIVRLSSGGDRLFVVRSVESPVTVWEVLE 460 (465)
T ss_pred ccCCcEEEEecCCeeEEEEEeccCceeEEEecC
Confidence 34456778888888 566777788899998765
No 465
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.42 E-value=35 Score=37.15 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=83.7
Q ss_pred CeEEEEeCC-Cce---EeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEcccc-ccceEEEEEeCCCCEE
Q 009373 273 MTVRVWDRA-LLK---CLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFL 347 (536)
Q Consensus 273 g~i~iwd~~-~~~---~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l 347 (536)
|.++.|++- .++ .++...-.+.+.++.|...++.+|-+..+++||+...++++.....+ ...|+.+.+ .+..+
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI 989 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARI 989 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEE
Confidence 445555542 333 22222356678888888889999889999999999988877665444 456666666 46788
Q ss_pred EEEcCCCcEEEEEcccCccccccceeeeccC--CCCCeEEEEE-cCCeEEEEeCCCcEEEEECC
Q 009373 348 FTGGEDGAIHMYEIINDCTEANVLLVATWIP--HTGPVNSLAF-EFPWLVSAAGDGKLSLIDVR 408 (536)
Q Consensus 348 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~ 408 (536)
++|...-.|.++-.+... ..+..+.. -.-.|+++.+ +.+.++.+..=|.+.+-.+.
T Consensus 990 ~VgD~qeSV~~~~y~~~~-----n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 990 VVGDIQESVHFVRYRRED-----NQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEeeccceEEEEEEecCC-----CeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECC
Confidence 888877777776665442 22222222 2234555555 56788888888888777664
No 466
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=79.14 E-value=3.6 Score=43.28 Aligned_cols=117 Identities=10% Similarity=0.135 Sum_probs=70.5
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCce-------------EEEEecCCCEEEEEeCCCcEEEEEc
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-------------IRAVAADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~sg~~dg~i~vwd~ 227 (536)
|.-+-|.++.-++..+-.+++|++-+..+... .-+.+|... +-.++|||..++.+..||.++.|.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 33333445667888888899999887765432 222334332 3457799999999999999999976
Q ss_pred ccCccceecccCcccccceEEeeCCc-cCEEEEEEeC-----------CEEEE-EecCCeEEEEeCCCceEe
Q 009373 228 VEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLALDL-----------TRIYS-GSWDMTVRVWDRALLKCL 286 (536)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~-----------~~l~s-~s~dg~i~iwd~~~~~~~ 286 (536)
.-. +.....+......|. ++-.|..++. .++++ ......+++|.....+|+
T Consensus 265 yi~--------g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YIT--------GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eee--------ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 311 112233444455565 3333333421 12344 345667999988777776
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.03 E-value=39 Score=33.77 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=38.2
Q ss_pred ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec--cCCCCCeEEEEEcCCe
Q 009373 332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IPHTGPVNSLAFEFPW 392 (536)
Q Consensus 332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~ 392 (536)
-...+.|+|.|+|.+|++--..|.|++++..+.... ....+... ....+....|+++|++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCCc
Confidence 446789999999988777655799999976544211 00011111 1136778999999865
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.01 E-value=8.6 Score=23.19 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=20.0
Q ss_pred ecCCEEEEec--CCcEEEEeCCCCcEEEEEc
Q 009373 300 PHDTTVASTS--GSDVYIWDTNSGCLLTVVN 328 (536)
Q Consensus 300 ~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~ 328 (536)
|+++.++++. +++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 3455555544 5788888888887777764
No 469
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.83 E-value=46 Score=32.63 Aligned_cols=148 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCEEEEecCCcEEEEeCCCC--cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373 302 DTTVASTSGSDVYIWDTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 379 (536)
Q Consensus 302 ~~~l~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 379 (536)
++.+++...|.+.-|-+... .....+.....++|.++.|++|.+.+|+--.|.+|.+++..... .......+.+..
T Consensus 34 NkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~--~~l~~~~~ck~k 111 (657)
T KOG2377|consen 34 NKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN--SQLEYTQECKTK 111 (657)
T ss_pred cceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc--hhhHHHHHhccC
Q ss_pred CCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC----EEEEe
Q 009373 380 TGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD----RIVCG 455 (536)
Q Consensus 380 ~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~sg 455 (536)
+..|.+..|..+.=++--.+.-+-+|-+... ....+....+...|.-..+.++ .|+|+
T Consensus 112 ~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pe------------------krslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 112 NANILGFCWTSSTEIAFITDQGIEFYQVLPE------------------KRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred cceeEEEEEecCeeEEEEecCCeEEEEEchh------------------hhhhhhhhhcccCccEEEEccccceEeeecc
Q ss_pred cCCCeEEEEeCCch
Q 009373 456 GEEGIVRIWNFSQA 469 (536)
Q Consensus 456 ~~Dg~i~vW~~~~~ 469 (536)
-..+++.=+.+.++
T Consensus 174 ~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 174 VLENVLNPFHFRAG 187 (657)
T ss_pred ccccccccEEEeec
No 470
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=78.82 E-value=73 Score=31.72 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=25.8
Q ss_pred cceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373 333 GNTKSLARSHTGDFLFTGGEDGAIHMYEIIND 364 (536)
Q Consensus 333 ~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~ 364 (536)
..|.+++..+..+.+++-+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999999999999999999999999753
No 471
>PRK13684 Ycf48-like protein; Provisional
Probab=78.48 E-value=65 Score=30.91 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=60.5
Q ss_pred cccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373 292 SDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369 (536)
Q Consensus 292 ~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 369 (536)
...+.++. +++.+++++..|.+..-.-..++.......+-...++++.+.+++..+++| ..|.+++=....+. .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~---s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE---S 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC---c
Confidence 34556665 677777777777655421122333333333455688999999999877765 56765432233331 1
Q ss_pred cceeeec-cCCCCCeEEEEEcC-CeEEEEeCCCcEEE
Q 009373 370 VLLVATW-IPHTGPVNSLAFEF-PWLVSAAGDGKLSL 404 (536)
Q Consensus 370 ~~~~~~~-~~h~~~v~~l~~~~-~~l~s~s~dg~i~v 404 (536)
...+..- ......+.++.+.+ ..++.++.+|.|..
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~ 284 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV 284 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE
Confidence 1111110 11224577888875 46777777886653
No 472
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=78.33 E-value=7.7 Score=21.93 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=17.2
Q ss_pred CCEEEEEecCCeEEEEeCCCceEeEe
Q 009373 263 LTRIYSGSWDMTVRVWDRALLKCLKV 288 (536)
Q Consensus 263 ~~~l~s~s~dg~i~iwd~~~~~~~~~ 288 (536)
++.++.++.+|.+..+|..+++....
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 34566677777777777777666544
No 473
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.84 E-value=38 Score=37.23 Aligned_cols=120 Identities=15% Similarity=0.068 Sum_probs=68.8
Q ss_pred EEEEecCCeEEEEeCCCceEeEe-----ee-------ccccEEEEeec----CCEEEEecCCcEEEEeCCCCcEE-EEEc
Q 009373 266 IYSGSWDMTVRVWDRALLKCLKV-----LR-------HSDWVYGLAPH----DTTVASTSGSDVYIWDTNSGCLL-TVVN 328 (536)
Q Consensus 266 l~s~s~dg~i~iwd~~~~~~~~~-----~~-------~~~~v~~~~~~----~~~l~~~~d~~i~i~d~~~~~~~-~~~~ 328 (536)
++..+.+-.|..||+++...... +. ......++.++ ...++.-.|..|++..+...... ..+
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~- 195 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF- 195 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-
Confidence 33444555788999875432221 11 11122233322 23334444888888766543322 222
Q ss_pred cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373 329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF 390 (536)
Q Consensus 329 ~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 390 (536)
......++++|+|.|+.++.|-..|++.-|...-..... ..+... -....|.+|.|-.
T Consensus 196 -p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-ip~Pp~--~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 196 -PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-IPEPPV--EENYRVLSVTWLS 253 (1405)
T ss_pred -CcccceeeEEeccccceeeEecCCCeEEEeecccceeec-ccCCCc--CCCcceeEEEEec
Confidence 356678999999999999999999999999765441100 000000 1157899999954
No 474
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=76.35 E-value=7.7 Score=21.18 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCeEEEEeCCCcEEEEE
Q 009373 381 GPVNSLAFEFPWLVSAAGDGKLSLID 406 (536)
Q Consensus 381 ~~v~~l~~~~~~l~s~s~dg~i~vwd 406 (536)
..|.+++..+++++.+.+-+.+++|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 35789999999999999999999873
No 475
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=75.48 E-value=64 Score=29.32 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=44.4
Q ss_pred CccCEEEEEE------e---CCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe-------ecCCEEEEecCCcEEE
Q 009373 252 HEGPITSLAL------D---LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYI 315 (536)
Q Consensus 252 h~~~v~~l~~------~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~i 315 (536)
+...|+|++- + ...|+.|.++|.|.|.|......+....-.+....+. -+.+.++++-||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 4567888876 1 1579999999999999999888888877443323332 2234455555888765
Q ss_pred E
Q 009373 316 W 316 (536)
Q Consensus 316 ~ 316 (536)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 3
No 476
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=75.24 E-value=57 Score=28.62 Aligned_cols=148 Identities=8% Similarity=0.071 Sum_probs=84.4
Q ss_pred EEEEeC-CEEEEEecCCeEEEEeCC--CceEeEeeeccccEEEEe--ecCCEEEEec-C---C---cEEEE---eCC--C
Q 009373 258 SLALDL-TRIYSGSWDMTVRVWDRA--LLKCLKVLRHSDWVYGLA--PHDTTVASTS-G---S---DVYIW---DTN--S 320 (536)
Q Consensus 258 ~l~~~~-~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d---~---~i~i~---d~~--~ 320 (536)
.++..+ +.|+.+...+.|.+|++. ..+....+..-+.|..+. ..|+++++-. + . .+|+| ... .
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 334434 666666777889999988 344556666668888887 6788888865 1 2 45664 222 1
Q ss_pred CcEEE---------------------EEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc--
Q 009373 321 GCLLT---------------------VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-- 377 (536)
Q Consensus 321 ~~~~~---------------------~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-- 377 (536)
..++. .+.-+-..++.+++..|-..-|++|+ ++.+.+|.+........-..+..+.
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence 11111 11112334567777777544466665 4578999887653211000111111
Q ss_pred --C-C-CCCeEEEEEcCCeEEEEeCCCcEEEEEC
Q 009373 378 --P-H-TGPVNSLAFEFPWLVSAAGDGKLSLIDV 407 (536)
Q Consensus 378 --~-h-~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 407 (536)
. | .-.+..+++..+|+|..+.. .+++..+
T Consensus 181 l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 1 2 22356778888888887755 4666544
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.46 E-value=8.4 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=15.7
Q ss_pred EEEEecCCeEEEEeCCCceEeEeee
Q 009373 266 IYSGSWDMTVRVWDRALLKCLKVLR 290 (536)
Q Consensus 266 l~s~s~dg~i~iwd~~~~~~~~~~~ 290 (536)
++.++.||.|...|.++|+.+..++
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4455666666666666666666554
No 478
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.18 E-value=14 Score=38.38 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=44.6
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCc---cceecccCccc-----ccceE-----EeeCCccCEEEEEE------eCCEEEE
Q 009373 208 ADKKLLVAGGTDGFIHCWRAVEVL---PHLFDISGSEK-----QNTQF-----RLWEHEGPITSLAL------DLTRIYS 268 (536)
Q Consensus 208 ~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~~~~-----~~~~~-----~~~~h~~~v~~l~~------~~~~l~s 268 (536)
.++..++.+..||.+......... ........... ..... ......+.+.++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 378889999999999888776411 10000000000 00000 00011122333333 4578999
Q ss_pred EecCCeEEEEeCCCceEeEeee
Q 009373 269 GSWDMTVRVWDRALLKCLKVLR 290 (536)
Q Consensus 269 ~s~dg~i~iwd~~~~~~~~~~~ 290 (536)
.+.|+++|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 479
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.94 E-value=9.2 Score=21.59 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=20.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeee
Q 009373 170 AKLLFTSGYDSIVRMWHLEDGFSIAS 195 (536)
Q Consensus 170 ~~~l~sgs~dg~v~iwd~~~~~~~~~ 195 (536)
+..++.++.+|.+..+|.++|+.+..
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 33677888899999999998887654
No 480
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=73.04 E-value=0.58 Score=42.91 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=43.7
Q ss_pred ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHh
Q 009373 64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW 112 (536)
Q Consensus 64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~ 112 (536)
+..+|..++..++++|.++++.+++.|+++...+.+...+|.+.+.+.|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 5678888999999999999999999999999999999999997554555
No 481
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.89 E-value=8.1 Score=40.06 Aligned_cols=39 Identities=28% Similarity=0.504 Sum_probs=29.2
Q ss_pred ccEEEEEEec----CCCEEEEEeCCCcEEEEECCCCceeeeeC
Q 009373 159 EAVLTVFVLA----SAKLLFTSGYDSIVRMWHLEDGFSIASSK 197 (536)
Q Consensus 159 ~~V~~v~~~~----~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 197 (536)
..+..++.++ +..+|++-+.|+++|+||+.+++++.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 4455555655 67899999999999999999999977653
No 482
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=72.39 E-value=87 Score=29.45 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=50.7
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-------ceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-------CTIRAVAADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~l~sg~~dg~i~vwd~ 227 (536)
|.+|...++|++|+|.=.-.+|.+.|-.+|+.+..+.+.. ....+...+.+.+-.+..++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 6677788889999999888999999999999999987662 222333455555656677888888874
No 483
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.37 E-value=0.55 Score=45.49 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=85.7
Q ss_pred eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEee--cCCEE-EEec-CCcEEEEeCCCCcEEEE-EccccccceE
Q 009373 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAP--HDTTV-ASTS-GSDVYIWDTNSGCLLTV-VNGAHVGNTK 336 (536)
Q Consensus 262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~i~ 336 (536)
.+.-++.++.+..+..||-. ++.......++....++. ++..+ +.+. .+.+.+||+.+...... +...|....
T Consensus 45 e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl- 122 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL- 122 (615)
T ss_pred CCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH-
Confidence 44457778888888889853 333333334444444442 33333 3333 78999999986532211 111122222
Q ss_pred EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEE
Q 009373 337 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLS 403 (536)
Q Consensus 337 ~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~ 403 (536)
+.|++.+..++.|...|.+.|++..+. +.+.....|...++++++.+ ++.+.++.|..+.
T Consensus 123 -l~wsKg~~el~ig~~~gn~viynhgts------R~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 123 -LAWSKGTPELVIGNNAGNIVIYNHGTS------RRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred -HhhccCCccccccccccceEEEeccch------hhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 678998899999999999999998777 44444444899999999986 6777777765443
No 484
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=71.92 E-value=86 Score=30.52 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=39.1
Q ss_pred cceEEEEEeCCCCEEEEEc-----------CCC-cEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCC
Q 009373 333 GNTKSLARSHTGDFLFTGG-----------EDG-AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDG 400 (536)
Q Consensus 333 ~~i~~l~~~~~~~~l~tg~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg 400 (536)
.....++|.++|+++++-. ..+ .|.+++-.++.- .......+.......+.+++.++-|++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG--~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG--KYDKSNVFAEELSMVTGLAVAVGGVYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC--CcceeEEeecCCCCccceeEecCCEEEeCCCe
Confidence 4567889999999777643 223 677776443311 11122233333345678888653366655554
Q ss_pred cEEEEEC
Q 009373 401 KLSLIDV 407 (536)
Q Consensus 401 ~i~vwd~ 407 (536)
..++.|.
T Consensus 92 i~~~~d~ 98 (367)
T TIGR02604 92 ILFLRDK 98 (367)
T ss_pred EEEEeCC
Confidence 3333344
No 485
>PLN02193 nitrile-specifier protein
Probab=71.91 E-value=1.2e+02 Score=30.80 Aligned_cols=145 Identities=12% Similarity=0.014 Sum_probs=70.3
Q ss_pred EeCCEEEEEecC-------CeEEEEeCCCceEeEeee---ccc----cEEEEeecCCEEEEec-C-----CcEEEEeCCC
Q 009373 261 LDLTRIYSGSWD-------MTVRVWDRALLKCLKVLR---HSD----WVYGLAPHDTTVASTS-G-----SDVYIWDTNS 320 (536)
Q Consensus 261 ~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~---~~~----~v~~~~~~~~~l~~~~-d-----~~i~i~d~~~ 320 (536)
.++..++.|+.+ ..+.+||+.+.+-...-. .+. ....+..++.+++.|+ + +.+..||+.+
T Consensus 174 ~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 355556666643 247788887654332111 111 1112235566666655 3 3588999988
Q ss_pred CcEEEEEcc---ccccceEEEEEeCCCCEEEEEcCCC-----cEEEEEcccCccccccceeee---ccCCCCCeEEEEEc
Q 009373 321 GCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLVAT---WIPHTGPVNSLAFE 389 (536)
Q Consensus 321 ~~~~~~~~~---~~~~~i~~l~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~ 389 (536)
.+....-.. .....-.+++. -++++.+.|+.++ .+..||+.+..- ..+.. .......-....+.
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W----~~~~~~~~~~~~R~~~~~~~~~ 328 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW----FHCSTPGDSFSIRGGAGLEVVQ 328 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE----EeCCCCCCCCCCCCCcEEEEEC
Confidence 754332110 01111112222 2456677777543 366777766521 11111 01111122233455
Q ss_pred CCeEEEEeCC----CcEEEEECCcc
Q 009373 390 FPWLVSAAGD----GKLSLIDVRKL 410 (536)
Q Consensus 390 ~~~l~s~s~d----g~i~vwd~~~~ 410 (536)
+..++.++.+ ..+.+||+.+.
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCC
Confidence 6666777655 45888888763
No 486
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=70.76 E-value=16 Score=21.95 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=22.3
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCceeeeeCC
Q 009373 168 ASAKLLFTSG-YDSIVRMWHLEDGFSIASSKP 198 (536)
Q Consensus 168 ~~~~~l~sgs-~dg~v~iwd~~~~~~~~~~~~ 198 (536)
|+++.|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4666555544 588999999988877776543
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.50 E-value=1.6e+02 Score=32.19 Aligned_cols=79 Identities=19% Similarity=0.053 Sum_probs=44.7
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCc
Q 009373 205 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALL 283 (536)
Q Consensus 205 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~ 283 (536)
|+..-|+.++.|+.+|.+.+|.+.+...........+.......+ +..+|..+.. ...-++-.-.|+.|.++++.+.
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~--~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF--SKKPINKLLVCASLELLLILSDSQIAVHKLPEL 98 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh--ccchhHHHhhcchhcchheecCCcceeeecCcc
Confidence 666778999999999999999986542111000000000000011 2455665555 3333444555788888888766
Q ss_pred eE
Q 009373 284 KC 285 (536)
Q Consensus 284 ~~ 285 (536)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 55
No 488
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.99 E-value=81 Score=28.10 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=41.4
Q ss_pred ceEEEEEeCCCCEEE-EEcCCCcEEEEE--cccCccccccceeeeccC---CCC-Ce--EEEEEcCCeEEEEeCCCcEEE
Q 009373 334 NTKSLARSHTGDFLF-TGGEDGAIHMYE--IINDCTEANVLLVATWIP---HTG-PV--NSLAFEFPWLVSAAGDGKLSL 404 (536)
Q Consensus 334 ~i~~l~~~~~~~~l~-tg~~dg~i~iwd--~~~~~~~~~~~~~~~~~~---h~~-~v--~~l~~~~~~l~s~s~dg~i~v 404 (536)
--+.++|+.+.+.+. +-+.+-.|.-|| ..++... +...+..++. ... .. .++.-++.+.++.-..|+|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s-nr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS-NRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCccccc-CcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 345778887776544 455666777777 4443221 1111221111 111 11 223334567777777888999
Q ss_pred EECCccc
Q 009373 405 IDVRKLL 411 (536)
Q Consensus 405 wd~~~~~ 411 (536)
.|..+++
T Consensus 238 ~dp~tGK 244 (310)
T KOG4499|consen 238 VDPTTGK 244 (310)
T ss_pred ECCCCCc
Confidence 9988853
No 489
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=69.66 E-value=11 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=16.7
Q ss_pred ecCCCEEEEEeCCCcEEEEEcc
Q 009373 207 AADKKLLVAGGTDGFIHCWRAV 228 (536)
Q Consensus 207 ~~~~~~l~sg~~dg~i~vwd~~ 228 (536)
...+..++.++.||.++.+|.+
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT
T ss_pred EEECCEEEEEcCCCEEEEEeCC
Confidence 3457788999999999988864
No 490
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.17 E-value=68 Score=35.46 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=59.1
Q ss_pred EEEEEEeC---CEEEEEecCCeEEEEeCCCce-EeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc
Q 009373 256 ITSLALDL---TRIYSGSWDMTVRVWDRALLK-CLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN 328 (536)
Q Consensus 256 v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 328 (536)
..++.|++ ...+.+..|+.|++..+.... ....+.....+++++ +.|+.++.|. +|++.-|-.. .+....+.
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip 236 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIP 236 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeeccc
Confidence 44556654 346777889999888765322 223344455566666 8899999998 7888887654 33333332
Q ss_pred c---ccccceEEEEEeCCCCEEEE
Q 009373 329 G---AHVGNTKSLARSHTGDFLFT 349 (536)
Q Consensus 329 ~---~~~~~i~~l~~~~~~~~l~t 349 (536)
. .....|.+++|-....++++
T Consensus 237 ~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 237 EPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCCcCCCcceeEEEEecceeEEEE
Confidence 1 12467899999877776655
No 491
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=68.83 E-value=1.4e+02 Score=30.44 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=62.4
Q ss_pred ccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373 291 HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369 (536)
Q Consensus 291 ~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 369 (536)
....|.++. .-...+.++++..+..||..+++.+..-.......|+.+..+-.|+ +.+|+.+| |.+.+.......
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s-- 238 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS-- 238 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc--
Confidence 445566665 2233556666666788898888877765544446677776665555 77787777 777776653110
Q ss_pred cceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcE
Q 009373 370 VLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKL 402 (536)
Q Consensus 370 ~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i 402 (536)
-.-..-..+.|..+.-+. ..+-.|+..|-.
T Consensus 239 ---n~~~~lp~~~I~ll~qD~qG~lWiGTenGl~ 269 (671)
T COG3292 239 ---NWGPMLPSGNILLLVQDAQGELWIGTENGLW 269 (671)
T ss_pred ---ccCCCCcchheeeeecccCCCEEEeecccce
Confidence 000111244555555554 677777777644
No 492
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=68.52 E-value=1.1e+02 Score=28.89 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=68.0
Q ss_pred CEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEEEc
Q 009373 255 PITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVN 328 (536)
Q Consensus 255 ~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 328 (536)
...++.|.++....++..+.| +...+.++.-..+. .+.....+. .++..++++..|.|.. ....|+.-..+.
T Consensus 63 ~l~~I~f~~~~g~ivG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~-T~DgG~tW~~~~ 140 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYR-TTDGGKTWQAVV 140 (302)
T ss_dssp EEEEEEEETTEEEEEEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEE-ESSTTSSEEEEE
T ss_pred eEEEEEecCCceEEEcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEE-eCCCCCCeeEcc
Confidence 356777755555555555543 33333444333322 122233333 3333444444454432 223344333333
Q ss_pred cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEE
Q 009373 329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLID 406 (536)
Q Consensus 329 ~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd 406 (536)
....+.+..+..+++|.+++++..-....-||.-.. ...+. -..-...|.++.|++ ..|......|.|++=+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~----~w~~~--~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT----TWQPH--NRNSSRRIQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S----S-EEE--E--SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc----cceEE--ccCccceehhceecCCCCEEEEeCCcEEEEcc
Confidence 346678899999999999988866555566764322 01121 123457899999987 4555566888888877
No 493
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=68.29 E-value=27 Score=34.01 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=87.4
Q ss_pred eecCCEEEEecCCcEEEEeCCCCcEE-EEEcccccc----ceE-EEEEeCCCCEEEEEcCCCcEEEE-EcccCccccccc
Q 009373 299 APHDTTVASTSGSDVYIWDTNSGCLL-TVVNGAHVG----NTK-SLARSHTGDFLFTGGEDGAIHMY-EIINDCTEANVL 371 (536)
Q Consensus 299 ~~~~~~l~~~~d~~i~i~d~~~~~~~-~~~~~~~~~----~i~-~l~~~~~~~~l~tg~~dg~i~iw-d~~~~~~~~~~~ 371 (536)
.|+++.+..-+..++.++++.+.... +.+.....+ .|+ .+..-..|.-+.+++.||.|.-| |++.... ....
T Consensus 229 ~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~-p~l~ 307 (733)
T COG4590 229 TPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ-PHLN 307 (733)
T ss_pred CCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC-Ccce
Confidence 49999999888899999988764322 111111111 122 11222345668888999998776 5554432 3333
Q ss_pred eeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC
Q 009373 372 LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA 449 (536)
Q Consensus 372 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 449 (536)
.++.++-...++..+.-.. +-+++-+.+|++.++......... .........+.++++.+
T Consensus 308 h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL------------------~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 308 HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL------------------FERAYQAPQLVAMSPNQ 369 (733)
T ss_pred eeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee------------------hhhhhcCcceeeeCccc
Confidence 4444443344444444432 567777788888777543311100 00011134566777778
Q ss_pred CEEEEecCCCeEEEEeCCchhh
Q 009373 450 DRIVCGGEEGIVRIWNFSQAFE 471 (536)
Q Consensus 450 ~~l~sg~~Dg~i~vW~~~~~~~ 471 (536)
+++++-. .|.|+++.+++...
T Consensus 370 ~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred chheeec-CCceEEEEecCCCC
Confidence 8888765 46799999987543
No 494
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=68.28 E-value=4.6 Score=30.47 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=23.1
Q ss_pred ccccCCcHHHHHHHhcCCChhhHHHH
Q 009373 62 STITDLPPALISEILNCLDPKELGIV 87 (536)
Q Consensus 62 ~~l~~Lp~ei~~~I~~~L~~~~l~~~ 87 (536)
.....||.|+-..||++|+-.||..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 45788999999999999999998764
No 495
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=67.64 E-value=1.2e+02 Score=33.95 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=82.8
Q ss_pred CEEEEEec---------CCeEEEEeCCC-----ce-----EeEee---eccccEEEEeecCCEEEEecCCcEEEEeC-CC
Q 009373 264 TRIYSGSW---------DMTVRVWDRAL-----LK-----CLKVL---RHSDWVYGLAPHDTTVASTSGSDVYIWDT-NS 320 (536)
Q Consensus 264 ~~l~s~s~---------dg~i~iwd~~~-----~~-----~~~~~---~~~~~v~~~~~~~~~l~~~~d~~i~i~d~-~~ 320 (536)
.+|+.|.. -|.+.++|+-. ++ .++.+ +..++|..++.-.-+++++.+.+|.+|++ +.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRD 1126 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccC
Confidence 46776643 48899998632 22 12222 26788999997667778888899999999 44
Q ss_pred CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC--CCCeEEEEE--cC--CeEE
Q 009373 321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH--TGPVNSLAF--EF--PWLV 394 (536)
Q Consensus 321 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~--~~l~ 394 (536)
...+-.-. -.-+++.....--+++|+.|.--..|.+.-..... ..+..+... .-.+.++.| ++ -.++
T Consensus 1127 ~~ligVaF--iD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep-----~rlsL~srd~~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1127 SELIGVAF--IDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEP-----YRLSLLSRDFEPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred CcceeeEE--eccceeEEehhhhhhheehhhhhhceEEEEEccCc-----eEEEEeecCCchhhceeeeeEEcCCeeEEE
Confidence 44332211 12223333333335678888777777777665542 112222211 224566666 33 4788
Q ss_pred EEeCCCcEEEEECC
Q 009373 395 SAAGDGKLSLIDVR 408 (536)
Q Consensus 395 s~s~dg~i~vwd~~ 408 (536)
++..|+.|+++-..
T Consensus 1200 vsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1200 VSDADRNIHVYMYA 1213 (1366)
T ss_pred EEcCCCcEEEEEeC
Confidence 88999999988654
No 496
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=67.06 E-value=18 Score=19.73 Aligned_cols=25 Identities=8% Similarity=0.335 Sum_probs=17.2
Q ss_pred eEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373 335 TKSLARSHTGDFLFTGGEDGAIHMY 359 (536)
Q Consensus 335 i~~l~~~~~~~~l~tg~~dg~i~iw 359 (536)
...++++++|+++++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777776666666654
No 497
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=66.24 E-value=2e+02 Score=32.30 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=84.8
Q ss_pred CEEEEEeC---------CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeC-
Q 009373 211 KLLVAGGT---------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR- 280 (536)
Q Consensus 211 ~~l~sg~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~- 280 (536)
.+|++|.. -|.++++|+-.--+..-......+. .........++|..++--..+|+++. ...|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~Kl-Kel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKL-KELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCccccee-eeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEec
Confidence 47777742 3889999975421110000000011 11112345688888887555565544 357999999
Q ss_pred CCceEeEe--eeccccEEEEeecCCEEEEec-CCcEEEEeCCCC-cEEEEE-ccccccceEEEEEeCCCC--EEEEEcCC
Q 009373 281 ALLKCLKV--LRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSG-CLLTVV-NGAHVGNTKSLARSHTGD--FLFTGGED 353 (536)
Q Consensus 281 ~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~-~~~~~~-~~~~~~~i~~l~~~~~~~--~l~tg~~d 353 (536)
+....+.. +...-.+.++..-.+++..|. -..|.+.-.... ..+..+ .....-.++++.|--+|. .++++..|
T Consensus 1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~ 1204 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDAD 1204 (1366)
T ss_pred cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCC
Confidence 44433322 224444555556667777776 455555444332 112222 122334678888887775 67888999
Q ss_pred CcEEEEEcccC
Q 009373 354 GAIHMYEIIND 364 (536)
Q Consensus 354 g~i~iwd~~~~ 364 (536)
+.|++|-....
T Consensus 1205 rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1205 RNIHVYMYAPE 1215 (1366)
T ss_pred CcEEEEEeCCC
Confidence 99999876543
No 498
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.54 E-value=1.4e+02 Score=33.43 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373 198 PLGCTIRAVAADKKLLVAGGTDGFIHCWRA 227 (536)
Q Consensus 198 ~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 227 (536)
.+.....++.+...+++.|...|.|+++-.
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecc
Confidence 345667888899999999999999999964
No 499
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=64.32 E-value=21 Score=21.21 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=21.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeCC
Q 009373 172 LLFTSGYDSIVRMWHLEDGFSIASSKP 198 (536)
Q Consensus 172 ~l~sgs~dg~v~iwd~~~~~~~~~~~~ 198 (536)
.++.++.||.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355668899999999999988877643
No 500
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=63.04 E-value=2.8e+02 Score=31.73 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=37.9
Q ss_pred eCCccCEEEEEEeC----CE-----EEEEecCCeEEEEeCCCceEeEeeeccccEEEEe------ecCC-EEEEec-CCc
Q 009373 250 WEHEGPITSLALDL----TR-----IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA------PHDT-TVASTS-GSD 312 (536)
Q Consensus 250 ~~h~~~v~~l~~~~----~~-----l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~------~~~~-~l~~~~-d~~ 312 (536)
.||..+|.|...+| .. -++.+.||.+.+=|.+- +..+...+.|..+- +.-+ +++..- ||+
T Consensus 344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgt 420 (1899)
T KOG4659|consen 344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGT 420 (1899)
T ss_pred CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEEecCcCce
Confidence 46778888877744 22 24567899999887642 23333333333332 2222 333333 676
Q ss_pred EEEEeCCCCc
Q 009373 313 VYIWDTNSGC 322 (536)
Q Consensus 313 i~i~d~~~~~ 322 (536)
+.+-|..+.+
T Consensus 421 lyvSdp~s~q 430 (1899)
T KOG4659|consen 421 LYVSDPLSKQ 430 (1899)
T ss_pred EEecCCCcce
Confidence 6666655543
Done!