Query 009374
Match_columns 536
No_of_seqs 340 out of 3640
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 1.4E-72 3E-77 669.6 51.8 494 9-533 520-1040(2272)
2 TIGR01257 rim_protein retinal- 100.0 9.3E-49 2E-53 466.5 44.2 408 72-534 1625-2050(2272)
3 KOG0059 Lipid exporter ABCA1 a 100.0 1E-45 2.2E-50 423.2 29.0 416 77-536 260-680 (885)
4 COG4555 NatA ABC-type Na+ tran 99.9 5.9E-27 1.3E-31 215.5 7.0 114 406-535 1-114 (245)
5 COG4152 ABC-type uncharacteriz 99.9 1.8E-26 3.9E-31 218.0 8.4 110 406-535 2-111 (300)
6 COG1126 GlnQ ABC-type polar am 99.9 8.9E-26 1.9E-30 210.5 11.8 115 406-535 2-117 (240)
7 COG3839 MalK ABC-type sugar tr 99.9 7.6E-26 1.6E-30 228.9 12.2 113 406-536 3-115 (338)
8 COG1125 OpuBA ABC-type proline 99.9 4.5E-26 9.8E-31 216.7 9.5 114 406-535 1-114 (309)
9 COG3842 PotA ABC-type spermidi 99.9 1.9E-25 4.1E-30 227.2 11.7 114 404-535 3-117 (352)
10 COG1131 CcmA ABC-type multidru 99.9 5E-25 1.1E-29 222.9 12.8 107 406-528 4-110 (293)
11 COG1135 AbcC ABC-type metal io 99.9 5.5E-25 1.2E-29 215.2 11.5 120 406-535 1-122 (339)
12 COG1127 Ttg2A ABC-type transpo 99.9 3.4E-24 7.3E-29 203.0 11.3 117 404-535 6-125 (263)
13 COG1137 YhbG ABC-type (unclass 99.9 4.9E-25 1.1E-29 202.6 4.5 107 406-527 4-110 (243)
14 PRK13537 nodulation ABC transp 99.9 1.2E-23 2.5E-28 214.7 13.8 110 405-531 6-115 (306)
15 COG2884 FtsE Predicted ATPase 99.9 4E-24 8.7E-29 195.3 8.5 116 406-535 1-118 (223)
16 COG0410 LivF ABC-type branched 99.9 3.1E-23 6.6E-28 196.0 10.9 104 406-524 3-106 (237)
17 TIGR00956 3a01205 Pleiotropic 99.9 1E-20 2.2E-25 226.3 34.8 104 405-524 758-864 (1394)
18 PRK13536 nodulation factor exp 99.9 8.7E-23 1.9E-27 210.7 14.1 110 404-530 39-148 (340)
19 COG1136 SalX ABC-type antimicr 99.9 1E-22 2.2E-27 195.1 13.0 112 407-529 2-116 (226)
20 TIGR03522 GldA_ABC_ATP gliding 99.9 2.1E-22 4.5E-27 205.2 13.6 108 406-530 2-109 (301)
21 COG1116 TauB ABC-type nitrate/ 99.9 7.2E-23 1.6E-27 196.4 9.5 108 406-534 3-110 (248)
22 PRK11432 fbpC ferric transport 99.9 4.7E-22 1E-26 206.0 13.4 113 404-534 4-116 (351)
23 COG0411 LivG ABC-type branched 99.9 1.3E-22 2.8E-27 193.2 8.2 102 406-522 4-105 (250)
24 COG3845 ABC-type uncharacteriz 99.9 2.3E-22 4.9E-27 207.8 10.1 103 405-522 3-105 (501)
25 TIGR03265 PhnT2 putative 2-ami 99.9 7.1E-22 1.5E-26 204.9 13.3 111 405-533 3-113 (353)
26 TIGR02314 ABC_MetN D-methionin 99.9 8.7E-22 1.9E-26 203.1 13.8 116 407-533 2-119 (343)
27 TIGR01288 nodI ATP-binding ABC 99.9 9.6E-22 2.1E-26 200.5 13.9 109 405-530 3-111 (303)
28 COG1118 CysA ABC-type sulfate/ 99.9 2.1E-22 4.6E-27 196.7 8.0 104 406-524 2-105 (345)
29 COG3638 ABC-type phosphate/pho 99.9 9.6E-22 2.1E-26 185.9 11.8 102 405-520 2-105 (258)
30 PRK11650 ugpC glycerol-3-phosp 99.9 1.1E-21 2.4E-26 203.7 13.1 111 406-533 3-113 (356)
31 cd03265 ABC_DrrA DrrA is the A 99.9 2.8E-21 6.1E-26 188.0 12.7 107 407-530 1-107 (220)
32 PRK09452 potA putrescine/sperm 99.9 3.1E-21 6.7E-26 201.3 13.4 111 404-532 12-122 (375)
33 cd03266 ABC_NatA_sodium_export 99.9 4E-21 8.6E-26 186.7 13.3 111 407-530 2-112 (218)
34 PRK11607 potG putrescine trans 99.9 3.4E-21 7.3E-26 201.3 13.4 113 404-534 17-129 (377)
35 TIGR00960 3a0501s02 Type II (G 99.9 4E-21 8.7E-26 186.4 12.6 110 407-529 2-113 (216)
36 TIGR03258 PhnT 2-aminoethylpho 99.9 3.8E-21 8.2E-26 199.9 13.1 110 406-533 5-116 (362)
37 cd03261 ABC_Org_Solvent_Resist 99.8 5.2E-21 1.1E-25 188.1 12.9 109 407-530 1-112 (235)
38 TIGR01188 drrA daunorubicin re 99.8 3.3E-21 7.1E-26 196.5 11.5 94 435-530 7-100 (302)
39 cd03263 ABC_subfamily_A The AB 99.8 5.7E-21 1.2E-25 185.8 12.7 108 407-529 1-108 (220)
40 cd03218 ABC_YhbG The ABC trans 99.8 5.1E-21 1.1E-25 187.7 12.4 107 407-528 1-107 (232)
41 COG1120 FepC ABC-type cobalami 99.8 2.4E-21 5.2E-26 189.2 8.9 100 406-521 2-101 (258)
42 PRK10851 sulfate/thiosulfate t 99.8 6.7E-21 1.4E-25 197.7 12.8 100 406-523 2-101 (353)
43 COG1117 PstB ABC-type phosphat 99.8 5.7E-21 1.2E-25 177.7 10.6 117 404-536 5-127 (253)
44 PRK11000 maltose/maltodextrin 99.8 8.3E-21 1.8E-25 198.4 13.1 108 406-531 3-110 (369)
45 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 8.2E-21 1.8E-25 184.4 12.1 111 407-528 1-114 (218)
46 PRK11153 metN DL-methionine tr 99.8 1E-20 2.3E-25 195.9 13.5 114 407-531 2-117 (343)
47 cd03268 ABC_BcrA_bacitracin_re 99.8 9E-21 2E-25 182.9 12.0 107 407-531 1-107 (208)
48 cd03269 ABC_putative_ATPase Th 99.8 8.2E-21 1.8E-25 183.4 11.5 103 407-529 1-103 (210)
49 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.2E-20 2.6E-25 186.3 12.8 107 407-528 1-107 (242)
50 cd03259 ABC_Carb_Solutes_like 99.8 8.5E-21 1.8E-25 183.7 11.4 104 407-528 1-104 (213)
51 TIGR02673 FtsE cell division A 99.8 1.6E-20 3.4E-25 182.0 13.0 108 407-528 2-111 (214)
52 PRK11629 lolD lipoprotein tran 99.8 2.5E-20 5.5E-25 183.0 14.2 114 405-529 4-120 (233)
53 PRK13538 cytochrome c biogenes 99.8 1.9E-20 4.1E-25 180.2 12.6 102 407-525 2-103 (204)
54 PRK10908 cell division protein 99.8 2.1E-20 4.6E-25 182.1 13.1 110 407-530 2-113 (222)
55 cd03301 ABC_MalK_N The N-termi 99.8 1.3E-20 2.8E-25 182.4 11.5 106 407-530 1-106 (213)
56 cd03292 ABC_FtsE_transporter F 99.8 2.1E-20 4.6E-25 181.0 12.9 109 407-529 1-111 (214)
57 cd03224 ABC_TM1139_LivF_branch 99.8 1.8E-20 3.9E-25 182.5 12.2 104 407-525 1-104 (222)
58 cd03264 ABC_drug_resistance_li 99.8 1.5E-20 3.2E-25 181.8 11.5 106 407-530 1-106 (211)
59 cd03258 ABC_MetN_methionine_tr 99.8 2.2E-20 4.7E-25 183.4 12.8 111 407-528 2-114 (233)
60 cd03293 ABC_NrtD_SsuB_transpor 99.8 2E-20 4.2E-25 182.1 12.0 106 407-529 1-106 (220)
61 PRK10895 lipopolysaccharide AB 99.8 2.3E-20 5E-25 184.2 12.6 104 406-524 3-106 (241)
62 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 2.7E-20 5.8E-25 183.2 12.8 106 407-529 2-107 (236)
63 TIGR03608 L_ocin_972_ABC putat 99.8 1.8E-20 3.8E-25 180.5 11.1 106 409-529 1-109 (206)
64 cd03219 ABC_Mj1267_LivG_branch 99.8 2.6E-20 5.7E-25 183.1 12.3 103 407-524 1-103 (236)
65 TIGR03410 urea_trans_UrtE urea 99.8 3.6E-20 7.8E-25 181.5 13.1 105 407-526 1-105 (230)
66 TIGR01189 ccmA heme ABC export 99.8 3.2E-20 6.9E-25 177.7 12.4 102 407-525 1-102 (198)
67 PRK13635 cbiO cobalt transport 99.8 3.6E-20 7.8E-25 186.7 12.9 113 405-531 4-117 (279)
68 COG1129 MglA ABC-type sugar tr 99.8 2.1E-20 4.5E-25 197.0 11.5 106 404-524 6-111 (500)
69 cd03262 ABC_HisP_GlnQ_permease 99.8 3.7E-20 7.9E-25 179.2 12.4 107 407-528 1-109 (213)
70 PLN03140 ABC transporter G fam 99.8 6.4E-18 1.4E-22 202.0 34.1 114 405-524 866-981 (1470)
71 TIGR01186 proV glycine betaine 99.8 3.2E-20 7E-25 192.5 12.7 98 435-533 7-108 (363)
72 cd03296 ABC_CysA_sulfate_impor 99.8 3.3E-20 7.2E-25 182.8 12.1 102 406-525 2-103 (239)
73 PRK13632 cbiO cobalt transport 99.8 4.7E-20 1E-24 185.2 13.2 113 404-530 5-118 (271)
74 PRK10070 glycine betaine trans 99.8 5.3E-20 1.2E-24 193.1 14.0 126 406-531 4-141 (400)
75 cd03225 ABC_cobalt_CbiO_domain 99.8 3.5E-20 7.5E-25 179.1 11.6 105 409-527 2-107 (211)
76 cd03260 ABC_PstB_phosphate_tra 99.8 3E-20 6.6E-25 181.6 11.3 104 407-526 1-110 (227)
77 PRK13644 cbiO cobalt transport 99.8 5.6E-20 1.2E-24 184.9 12.9 111 407-531 2-113 (274)
78 PRK13539 cytochrome c biogenes 99.8 6.2E-20 1.3E-24 177.0 12.5 107 406-531 2-108 (207)
79 TIGR00972 3a0107s01c2 phosphat 99.8 6.7E-20 1.4E-24 181.6 13.1 104 406-525 1-110 (247)
80 PRK13637 cbiO cobalt transport 99.8 7.5E-20 1.6E-24 185.2 13.7 117 406-533 2-121 (287)
81 PRK09493 glnQ glutamine ABC tr 99.8 7E-20 1.5E-24 180.7 13.1 107 407-528 2-110 (240)
82 cd03233 ABC_PDR_domain1 The pl 99.8 7.2E-20 1.6E-24 175.8 12.7 105 406-523 3-110 (202)
83 cd03267 ABC_NatA_like Similar 99.8 4.9E-20 1.1E-24 181.3 11.5 121 408-530 2-129 (236)
84 PRK11248 tauB taurine transpor 99.8 6.3E-20 1.4E-24 182.6 12.4 102 407-529 2-103 (255)
85 TIGR03411 urea_trans_UrtD urea 99.8 8.4E-20 1.8E-24 180.2 13.2 102 406-522 2-103 (242)
86 PRK13650 cbiO cobalt transport 99.8 7.4E-20 1.6E-24 184.5 12.9 114 406-532 4-118 (279)
87 TIGR02211 LolD_lipo_ex lipopro 99.8 8.7E-20 1.9E-24 177.6 12.9 110 407-527 2-114 (221)
88 PRK14267 phosphate ABC transpo 99.8 1E-19 2.2E-24 181.0 13.5 105 406-525 4-114 (253)
89 PRK10584 putative ABC transpor 99.8 1.2E-19 2.7E-24 177.4 13.9 113 405-528 5-120 (228)
90 PRK13540 cytochrome c biogenes 99.8 8.6E-20 1.9E-24 175.0 12.4 98 407-521 2-99 (200)
91 cd03226 ABC_cobalt_CbiO_domain 99.8 5.3E-20 1.1E-24 177.1 10.6 100 408-525 1-101 (205)
92 cd03231 ABC_CcmA_heme_exporter 99.8 6.8E-20 1.5E-24 175.9 11.3 98 407-521 1-98 (201)
93 cd03256 ABC_PhnC_transporter A 99.8 8.1E-20 1.8E-24 180.2 11.9 100 407-520 1-102 (241)
94 PRK09536 btuD corrinoid ABC tr 99.8 8.1E-20 1.8E-24 191.8 12.6 100 406-521 3-102 (402)
95 PRK13646 cbiO cobalt transport 99.8 1.1E-19 2.5E-24 183.8 13.0 117 406-533 2-123 (286)
96 PRK13634 cbiO cobalt transport 99.8 1.1E-19 2.3E-24 184.3 12.6 114 407-531 3-121 (290)
97 PRK13548 hmuV hemin importer A 99.8 1.2E-19 2.7E-24 180.8 12.9 104 406-525 2-105 (258)
98 PRK11124 artP arginine transpo 99.8 1.4E-19 3E-24 178.8 13.1 109 406-529 2-116 (242)
99 PRK14247 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 179.4 13.3 104 406-525 3-111 (250)
100 PRK13543 cytochrome c biogenes 99.8 2E-19 4.3E-24 174.4 13.8 104 404-526 9-112 (214)
101 PRK10619 histidine/lysine/argi 99.8 1.7E-19 3.7E-24 179.7 13.4 108 405-527 4-124 (257)
102 PRK13647 cbiO cobalt transport 99.8 1.6E-19 3.6E-24 181.5 13.2 110 406-530 4-114 (274)
103 PRK11831 putative ABC transpor 99.8 1.8E-19 3.9E-24 180.8 13.3 103 405-522 6-110 (269)
104 PRK13641 cbiO cobalt transport 99.8 1.7E-19 3.7E-24 182.6 13.3 115 406-531 2-121 (287)
105 PRK13643 cbiO cobalt transport 99.8 1.9E-19 4.1E-24 182.3 13.4 116 407-533 2-122 (288)
106 PRK11264 putative amino-acid A 99.8 1.8E-19 3.9E-24 178.8 12.9 108 406-528 3-118 (250)
107 PRK10247 putative ABC transpor 99.8 2.4E-19 5.1E-24 175.2 13.5 105 404-525 5-109 (225)
108 TIGR03415 ABC_choXWV_ATP choli 99.8 1.4E-19 3E-24 188.7 12.5 125 407-531 1-141 (382)
109 PRK13648 cbiO cobalt transport 99.8 2E-19 4.4E-24 180.4 13.3 113 404-530 5-118 (269)
110 PRK14268 phosphate ABC transpo 99.8 2.3E-19 4.9E-24 179.0 13.5 110 404-529 10-125 (258)
111 PRK14241 phosphate transporter 99.8 2.2E-19 4.8E-24 179.0 13.3 105 406-525 4-114 (258)
112 cd03213 ABCG_EPDR ABCG transpo 99.8 2.8E-19 6E-24 170.7 13.4 113 406-531 3-117 (194)
113 cd03257 ABC_NikE_OppD_transpor 99.8 2.4E-19 5.3E-24 175.2 13.2 108 407-525 2-113 (228)
114 PRK13636 cbiO cobalt transport 99.8 2.4E-19 5.3E-24 181.1 13.6 113 405-531 4-118 (283)
115 PRK13640 cbiO cobalt transport 99.8 2.1E-19 4.5E-24 181.5 13.0 113 405-531 4-120 (282)
116 PRK10744 pstB phosphate transp 99.8 2.6E-19 5.7E-24 178.7 13.6 111 404-530 11-128 (260)
117 PRK13651 cobalt transporter AT 99.8 2.4E-19 5.1E-24 182.8 13.4 118 406-534 2-144 (305)
118 PRK13633 cobalt transporter AT 99.8 2.7E-19 5.9E-24 180.5 13.5 116 406-531 4-121 (280)
119 PRK13631 cbiO cobalt transport 99.8 3E-19 6.6E-24 183.1 14.1 117 405-532 20-153 (320)
120 PRK13652 cbiO cobalt transport 99.8 3.1E-19 6.8E-24 179.8 13.8 110 406-530 3-113 (277)
121 PRK14242 phosphate transporter 99.8 3.3E-19 7.1E-24 177.3 13.7 107 404-526 4-116 (253)
122 TIGR02982 heterocyst_DevA ABC 99.8 2.5E-19 5.4E-24 174.4 12.5 107 407-524 2-110 (220)
123 PRK11614 livF leucine/isoleuci 99.8 2.8E-19 6E-24 176.0 12.8 102 405-521 4-105 (237)
124 PRK14250 phosphate ABC transpo 99.8 1.9E-19 4.1E-24 177.7 11.5 103 406-525 3-105 (241)
125 cd03229 ABC_Class3 This class 99.8 2.2E-19 4.8E-24 169.0 11.4 99 407-520 1-100 (178)
126 PRK15079 oligopeptide ABC tran 99.8 4.3E-19 9.3E-24 182.7 14.5 127 404-532 6-138 (331)
127 PRK14274 phosphate ABC transpo 99.8 3.4E-19 7.4E-24 177.8 13.3 107 404-526 10-122 (259)
128 TIGR03740 galliderm_ABC gallid 99.8 3E-19 6.5E-24 174.2 12.5 105 407-531 1-105 (223)
129 cd03215 ABC_Carb_Monos_II This 99.8 4.6E-19 9.9E-24 167.4 13.3 98 406-522 4-104 (182)
130 PRK14269 phosphate ABC transpo 99.8 2.8E-19 6.1E-24 177.0 12.4 104 406-526 2-108 (246)
131 PRK13649 cbiO cobalt transport 99.8 3.5E-19 7.5E-24 179.8 13.3 114 406-530 2-120 (280)
132 PRK14259 phosphate ABC transpo 99.8 3.1E-19 6.8E-24 179.0 12.8 108 404-527 11-124 (269)
133 COG1122 CbiO ABC-type cobalt t 99.8 3.1E-19 6.7E-24 174.0 12.4 115 406-535 3-119 (235)
134 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 1.6E-19 3.5E-24 175.6 10.2 96 405-520 3-101 (254)
135 cd03230 ABC_DR_subfamily_A Thi 99.8 3.7E-19 8.1E-24 166.7 12.4 95 407-518 1-95 (173)
136 PRK11300 livG leucine/isoleuci 99.8 3.2E-19 6.9E-24 177.5 12.5 102 405-521 4-105 (255)
137 PRK14235 phosphate transporter 99.8 4.9E-19 1.1E-23 177.4 13.9 107 404-526 17-129 (267)
138 PRK14270 phosphate ABC transpo 99.8 4.3E-19 9.2E-24 176.3 13.3 106 405-526 3-114 (251)
139 cd03294 ABC_Pro_Gly_Bertaine T 99.8 1.9E-19 4.2E-24 180.5 10.8 106 408-528 26-134 (269)
140 TIGR03005 ectoine_ehuA ectoine 99.8 3.8E-19 8.1E-24 176.8 12.7 107 407-528 1-120 (252)
141 PRK14256 phosphate ABC transpo 99.8 5.2E-19 1.1E-23 175.7 13.6 106 405-525 3-114 (252)
142 TIGR02315 ABC_phnC phosphonate 99.8 2.3E-19 5E-24 177.2 11.0 99 407-519 2-102 (243)
143 PRK13642 cbiO cobalt transport 99.8 4.5E-19 9.9E-24 178.6 13.3 113 406-531 4-117 (277)
144 PRK14273 phosphate ABC transpo 99.8 5E-19 1.1E-23 176.0 13.5 106 405-526 6-117 (254)
145 cd03300 ABC_PotA_N PotA is an 99.8 3.4E-19 7.4E-24 174.9 11.7 103 407-527 1-103 (232)
146 TIGR00968 3a0106s01 sulfate AB 99.8 3.5E-19 7.5E-24 175.4 11.7 103 407-527 1-103 (237)
147 PRK13638 cbiO cobalt transport 99.8 4.7E-19 1E-23 177.9 12.9 109 407-530 2-112 (271)
148 COG1124 DppF ABC-type dipeptid 99.8 4.3E-19 9.3E-24 169.1 11.6 114 406-530 3-118 (252)
149 PRK11247 ssuB aliphatic sulfon 99.8 4.3E-19 9.4E-24 176.6 12.1 95 405-520 11-105 (257)
150 cd03299 ABC_ModC_like Archeal 99.8 4.7E-19 1E-23 174.3 12.1 104 407-529 1-104 (235)
151 PRK14240 phosphate transporter 99.8 7E-19 1.5E-23 174.6 13.3 105 406-526 3-113 (250)
152 TIGR01978 sufC FeS assembly AT 99.8 4.4E-19 9.6E-24 175.1 11.8 101 407-522 1-103 (243)
153 PRK10575 iron-hydroxamate tran 99.8 5.1E-19 1.1E-23 177.1 12.3 101 404-520 9-109 (265)
154 COG4525 TauB ABC-type taurine 99.8 3.7E-19 8E-24 163.3 10.0 110 406-534 3-112 (259)
155 PRK14237 phosphate transporter 99.8 8.8E-19 1.9E-23 175.6 13.6 107 404-526 18-130 (267)
156 COG4604 CeuD ABC-type enteroch 99.8 4.7E-20 1E-24 169.5 3.9 110 406-531 1-112 (252)
157 TIGR02324 CP_lyasePhnL phospho 99.8 8E-19 1.7E-23 171.2 12.6 114 407-528 2-122 (224)
158 PRK10253 iron-enterobactin tra 99.8 5.6E-19 1.2E-23 176.9 11.8 101 404-520 5-105 (265)
159 PRK15112 antimicrobial peptide 99.8 9E-19 1.9E-23 175.5 13.0 112 406-524 4-117 (267)
160 PRK14272 phosphate ABC transpo 99.8 1E-18 2.3E-23 173.5 13.2 106 406-526 4-115 (252)
161 PRK13639 cbiO cobalt transport 99.8 9.7E-19 2.1E-23 176.0 13.1 107 407-528 2-111 (275)
162 COG4674 Uncharacterized ABC-ty 99.8 2.1E-19 4.6E-24 164.9 7.4 102 405-521 4-106 (249)
163 COG4175 ProV ABC-type proline/ 99.8 1.2E-19 2.6E-24 177.7 6.2 131 405-535 3-145 (386)
164 cd03232 ABC_PDR_domain2 The pl 99.8 1.3E-18 2.8E-23 165.8 13.2 110 406-531 3-114 (192)
165 PRK14253 phosphate ABC transpo 99.8 9.3E-19 2E-23 173.6 12.6 105 406-526 3-112 (249)
166 TIGR03873 F420-0_ABC_ATP propo 99.8 6.8E-19 1.5E-23 175.3 11.6 98 407-520 2-99 (256)
167 cd03369 ABCC_NFT1 Domain 2 of 99.8 8.2E-19 1.8E-23 169.1 11.8 101 405-520 5-105 (207)
168 TIGR02769 nickel_nikE nickel i 99.8 1.1E-18 2.4E-23 174.6 13.2 111 406-522 2-116 (265)
169 PRK13645 cbiO cobalt transport 99.8 1.2E-18 2.5E-23 176.7 13.4 115 405-530 5-125 (289)
170 PRK14248 phosphate ABC transpo 99.8 1.8E-18 4E-23 173.4 14.7 106 404-525 19-130 (268)
171 COG1134 TagH ABC-type polysacc 99.8 6.8E-19 1.5E-23 168.1 10.8 117 406-535 3-128 (249)
172 cd03298 ABC_ThiQ_thiamine_tran 99.8 5.8E-19 1.2E-23 170.6 10.3 95 407-521 1-95 (211)
173 PRK11308 dppF dipeptide transp 99.8 2E-18 4.3E-23 177.6 14.8 121 405-530 4-129 (327)
174 PRK14236 phosphate transporter 99.8 1.7E-18 3.6E-23 174.1 14.0 107 404-526 23-135 (272)
175 cd03246 ABCC_Protease_Secretio 99.8 1.1E-18 2.5E-23 163.4 11.9 96 407-517 1-96 (173)
176 PRK14238 phosphate transporter 99.8 1.6E-18 3.6E-23 174.0 13.8 107 404-526 22-134 (271)
177 PRK14255 phosphate ABC transpo 99.8 1.8E-18 3.9E-23 171.9 13.8 107 404-526 3-115 (252)
178 PRK14261 phosphate ABC transpo 99.8 1.4E-18 3.1E-23 172.7 13.2 107 404-526 4-116 (253)
179 cd03228 ABCC_MRP_Like The MRP 99.8 1.1E-18 2.3E-23 163.2 11.5 96 407-517 1-96 (171)
180 PRK14239 phosphate transporter 99.8 1.8E-18 3.9E-23 171.8 13.6 107 405-527 4-116 (252)
181 PRK11231 fecE iron-dicitrate t 99.8 9E-19 2E-23 174.3 11.5 99 406-520 2-100 (255)
182 PRK14262 phosphate ABC transpo 99.8 1.7E-18 3.6E-23 171.9 13.2 105 406-526 3-113 (250)
183 PRK14246 phosphate ABC transpo 99.8 1.2E-18 2.7E-23 173.5 12.3 107 404-526 8-120 (257)
184 cd03247 ABCC_cytochrome_bd The 99.8 1E-18 2.2E-23 164.5 11.0 95 407-517 1-95 (178)
185 PRK10762 D-ribose transporter 99.8 8.5E-19 1.9E-23 191.1 12.1 102 406-522 4-105 (501)
186 PRK13549 xylose transporter AT 99.8 9.4E-19 2E-23 191.0 12.4 104 405-523 4-109 (506)
187 PRK14254 phosphate ABC transpo 99.8 1.8E-18 3.8E-23 175.0 13.4 108 404-527 37-150 (285)
188 cd03235 ABC_Metallic_Cations A 99.8 5.7E-19 1.2E-23 170.9 9.3 92 409-521 2-95 (213)
189 PRK14251 phosphate ABC transpo 99.8 2.2E-18 4.8E-23 171.1 13.6 105 406-526 4-114 (251)
190 cd03252 ABCC_Hemolysin The ABC 99.8 8.5E-19 1.8E-23 172.5 10.5 99 407-520 1-99 (237)
191 PRK14260 phosphate ABC transpo 99.8 1.8E-18 3.9E-23 172.6 12.9 104 406-525 7-116 (259)
192 PRK14271 phosphate ABC transpo 99.8 2.1E-18 4.6E-23 173.6 13.4 103 404-522 19-126 (276)
193 PRK14249 phosphate ABC transpo 99.8 2.4E-18 5.2E-23 170.9 13.6 106 406-527 4-115 (251)
194 cd03244 ABCC_MRP_domain2 Domai 99.8 8.4E-19 1.8E-23 170.7 10.1 99 407-520 3-101 (221)
195 TIGR01166 cbiO cobalt transpor 99.8 1.4E-18 3E-23 165.3 11.3 94 435-529 6-102 (190)
196 TIGR02868 CydC thiol reductant 99.8 9E-19 2E-23 192.2 11.3 111 405-534 333-443 (529)
197 cd03251 ABCC_MsbA MsbA is an e 99.8 8.6E-19 1.9E-23 172.1 10.0 100 407-521 1-100 (234)
198 COG4181 Predicted ABC-type tra 99.8 6.6E-19 1.4E-23 158.4 8.3 110 406-526 6-118 (228)
199 cd03254 ABCC_Glucan_exporter_l 99.8 1E-18 2.2E-23 171.1 9.9 100 406-521 2-101 (229)
200 TIGR01277 thiQ thiamine ABC tr 99.8 1.9E-18 4.1E-23 167.4 11.4 94 408-521 2-95 (213)
201 PRK14275 phosphate ABC transpo 99.8 3.1E-18 6.7E-23 173.3 13.4 107 404-526 37-149 (286)
202 PRK15439 autoinducer 2 ABC tra 99.8 1.6E-18 3.5E-23 189.2 12.1 101 405-520 10-110 (510)
203 cd03234 ABCG_White The White s 99.8 1.9E-18 4.2E-23 168.8 11.5 103 407-524 4-109 (226)
204 PRK09984 phosphonate/organopho 99.8 2.1E-18 4.5E-23 172.4 11.9 100 406-520 4-110 (262)
205 PRK14258 phosphate ABC transpo 99.8 3.3E-18 7.1E-23 170.9 13.2 105 406-526 7-117 (261)
206 PRK11288 araG L-arabinose tran 99.8 2.1E-18 4.6E-23 187.9 12.8 102 405-521 3-104 (501)
207 PRK14245 phosphate ABC transpo 99.8 3.3E-18 7.2E-23 169.7 13.0 106 405-526 2-113 (250)
208 PRK14252 phosphate ABC transpo 99.8 3.9E-18 8.4E-23 170.8 13.4 108 404-527 14-129 (265)
209 cd03245 ABCC_bacteriocin_expor 99.8 2.2E-18 4.8E-23 167.6 10.9 99 407-520 3-101 (220)
210 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.6E-18 3.6E-23 195.8 11.5 112 405-534 450-561 (686)
211 PRK13541 cytochrome c biogenes 99.8 3.6E-18 7.8E-23 163.1 11.8 98 407-525 2-99 (195)
212 PRK13547 hmuV hemin importer A 99.8 2.6E-18 5.6E-23 172.5 11.3 98 407-520 2-107 (272)
213 KOG0058 Peptide exporter, ABC 99.8 1E-18 2.2E-23 188.2 8.8 115 405-535 464-578 (716)
214 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.8E-18 3.9E-23 170.3 9.7 100 407-520 1-100 (238)
215 PRK14243 phosphate transporter 99.8 4.8E-18 1E-22 170.0 12.7 106 405-526 9-120 (264)
216 PRK11022 dppD dipeptide transp 99.8 6.4E-18 1.4E-22 173.9 13.9 114 406-530 3-126 (326)
217 cd03248 ABCC_TAP TAP, the Tran 99.8 2.1E-18 4.6E-23 168.5 9.6 103 404-520 9-111 (226)
218 PRK09700 D-allose transporter 99.8 3.1E-18 6.7E-23 187.1 12.0 101 405-520 4-104 (510)
219 PRK14263 phosphate ABC transpo 99.8 5.9E-18 1.3E-22 169.0 12.9 106 404-525 6-117 (261)
220 cd03289 ABCC_CFTR2 The CFTR su 99.7 3.4E-18 7.4E-23 171.5 10.7 99 406-520 2-100 (275)
221 COG4598 HisP ABC-type histidin 99.7 4E-19 8.7E-24 160.9 3.5 116 405-535 5-133 (256)
222 PRK11144 modC molybdate transp 99.7 4.5E-18 9.8E-23 176.9 11.9 96 407-520 2-100 (352)
223 COG2274 SunT ABC-type bacterio 99.7 1.9E-18 4.2E-23 192.1 9.7 103 404-521 469-571 (709)
224 cd03253 ABCC_ATM1_transporter 99.7 3.5E-18 7.7E-23 168.0 10.5 98 407-520 1-98 (236)
225 PRK14266 phosphate ABC transpo 99.7 8E-18 1.7E-22 167.0 13.0 104 406-525 3-112 (250)
226 PRK09473 oppD oligopeptide tra 99.7 9.7E-18 2.1E-22 172.7 14.0 116 404-530 10-134 (330)
227 COG4586 ABC-type uncharacteriz 99.7 7.2E-19 1.6E-23 169.2 5.1 127 406-534 3-136 (325)
228 cd03217 ABC_FeS_Assembly ABC-t 99.7 4.6E-18 9.9E-23 163.1 10.5 97 407-518 1-99 (200)
229 TIGR02633 xylG D-xylose ABC tr 99.7 6.5E-18 1.4E-22 184.2 12.6 101 407-522 2-104 (500)
230 TIGR02857 CydD thiol reductant 99.7 4.7E-18 1E-22 186.6 11.5 101 406-521 320-420 (529)
231 PRK10771 thiQ thiamine transpo 99.7 5.6E-18 1.2E-22 166.2 10.9 94 407-520 2-95 (232)
232 PRK11160 cysteine/glutathione 99.7 3.6E-18 7.9E-23 189.0 10.5 112 405-533 337-448 (574)
233 PRK14257 phosphate ABC transpo 99.7 1.6E-17 3.5E-22 170.9 14.4 110 404-527 78-193 (329)
234 PRK14265 phosphate ABC transpo 99.7 1.2E-17 2.5E-22 168.1 13.2 106 404-525 18-129 (274)
235 PRK14244 phosphate ABC transpo 99.7 8.6E-18 1.9E-22 166.9 11.9 104 407-526 6-115 (251)
236 PRK11701 phnK phosphonate C-P 99.7 1.3E-17 2.8E-22 166.3 13.1 101 405-520 5-115 (258)
237 TIGR01193 bacteriocin_ABC ABC- 99.7 3.5E-18 7.5E-23 193.9 10.1 112 405-533 472-583 (708)
238 KOG0057 Mitochondrial Fe/S clu 99.7 4.8E-18 1E-22 177.4 10.0 100 404-520 349-448 (591)
239 TIGR02142 modC_ABC molybdenum 99.7 8.1E-18 1.8E-22 175.1 11.8 95 411-522 4-101 (354)
240 COG4559 ABC-type hemin transpo 99.7 3.1E-18 6.7E-23 159.4 7.5 105 406-526 1-105 (259)
241 cd03288 ABCC_SUR2 The SUR doma 99.7 8.4E-18 1.8E-22 167.6 11.3 101 404-519 17-117 (257)
242 cd03297 ABC_ModC_molybdenum_tr 99.7 1.1E-17 2.3E-22 162.2 11.7 95 410-522 4-101 (214)
243 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 4.9E-18 1.1E-22 192.7 10.8 112 405-533 476-587 (710)
244 PRK10261 glutathione transport 99.7 1.1E-17 2.5E-22 186.4 13.5 118 404-532 10-143 (623)
245 PRK10419 nikE nickel transport 99.7 1.7E-17 3.6E-22 166.4 13.2 110 406-521 3-116 (268)
246 COG4133 CcmA ABC-type transpor 99.7 2.5E-18 5.5E-23 157.3 6.6 97 435-533 16-113 (209)
247 PRK14264 phosphate ABC transpo 99.7 1.8E-17 3.8E-22 169.2 13.5 103 404-522 43-151 (305)
248 PLN03211 ABC transporter G-25; 99.7 6.2E-18 1.4E-22 188.7 11.0 86 434-524 81-168 (659)
249 PRK10790 putative multidrug tr 99.7 7.2E-18 1.6E-22 187.6 11.5 110 406-534 340-449 (592)
250 PRK10982 galactose/methyl gala 99.7 6.9E-18 1.5E-22 183.6 10.9 97 409-520 1-97 (491)
251 COG4161 ArtP ABC-type arginine 99.7 3.4E-18 7.4E-23 152.3 6.7 115 406-535 2-122 (242)
252 TIGR00958 3a01208 Conjugate Tr 99.7 8E-18 1.7E-22 190.6 11.2 113 405-533 477-589 (711)
253 cd03223 ABCD_peroxisomal_ALDP 99.7 1.3E-17 2.9E-22 155.1 10.8 96 407-530 1-96 (166)
254 PRK11174 cysteine/glutathione 99.7 1.1E-17 2.4E-22 186.0 11.9 110 406-534 349-458 (588)
255 PRK10261 glutathione transport 99.7 2.1E-17 4.6E-22 184.3 13.9 118 405-526 312-433 (623)
256 KOG0065 Pleiotropic drug resis 99.7 1.4E-15 3E-20 172.9 28.4 105 405-524 786-892 (1391)
257 CHL00131 ycf16 sulfate ABC tra 99.7 1.9E-17 4.1E-22 164.5 12.0 101 405-521 6-109 (252)
258 PRK11176 lipid transporter ATP 99.7 8.6E-18 1.9E-22 186.6 10.4 100 406-520 341-440 (582)
259 cd03290 ABCC_SUR1_N The SUR do 99.7 1.3E-17 2.8E-22 162.0 10.4 99 408-521 2-103 (218)
260 COG4988 CydD ABC-type transpor 99.7 1.1E-17 2.3E-22 177.1 10.4 111 406-534 320-430 (559)
261 cd03250 ABCC_MRP_domain1 Domai 99.7 1.1E-17 2.5E-22 160.8 9.4 89 407-520 1-89 (204)
262 TIGR03375 type_I_sec_LssB type 99.7 1E-17 2.3E-22 189.5 10.6 112 405-533 462-573 (694)
263 PRK10418 nikD nickel transport 99.7 2.9E-17 6.4E-22 163.4 12.5 103 406-527 4-112 (254)
264 TIGR01842 type_I_sec_PrtD type 99.7 1.8E-17 3.9E-22 182.5 12.0 102 405-521 315-416 (544)
265 PRK15093 antimicrobial peptide 99.7 3.6E-17 7.7E-22 168.7 12.4 104 406-520 3-115 (330)
266 COG4619 ABC-type uncharacteriz 99.7 3.6E-18 7.8E-23 153.2 4.3 90 435-526 17-106 (223)
267 TIGR02323 CP_lyasePhnK phospho 99.7 3.3E-17 7.2E-22 162.9 11.5 100 406-520 3-112 (253)
268 TIGR03269 met_CoM_red_A2 methy 99.7 2.6E-17 5.6E-22 180.3 11.6 110 407-531 1-145 (520)
269 PRK09580 sufC cysteine desulfu 99.7 3.2E-17 7E-22 162.4 10.7 98 407-519 2-101 (248)
270 TIGR03269 met_CoM_red_A2 methy 99.7 5.6E-17 1.2E-21 177.7 13.2 109 404-522 277-391 (520)
271 cd03216 ABC_Carb_Monos_I This 99.7 3.7E-17 8E-22 151.7 9.9 88 407-516 1-88 (163)
272 PRK09700 D-allose transporter 99.7 2.8E-17 6.1E-22 179.6 10.6 99 405-520 264-365 (510)
273 PRK13657 cyclic beta-1,2-gluca 99.7 3.9E-17 8.5E-22 181.5 11.9 110 405-532 333-442 (588)
274 PRK10789 putative multidrug tr 99.7 3.1E-17 6.8E-22 181.4 10.7 100 406-520 313-412 (569)
275 TIGR02204 MsbA_rel ABC transpo 99.7 3E-17 6.6E-22 182.0 10.6 102 405-520 336-437 (576)
276 TIGR00955 3a01204 The Eye Pigm 99.7 3.6E-17 7.7E-22 182.3 11.0 88 433-524 37-127 (617)
277 TIGR01846 type_I_sec_HlyB type 99.7 3.3E-17 7.1E-22 185.5 10.8 101 405-520 454-554 (694)
278 TIGR02633 xylG D-xylose ABC tr 99.7 3.4E-17 7.4E-22 178.5 10.4 104 405-520 256-363 (500)
279 TIGR01192 chvA glucan exporter 99.7 5.9E-17 1.3E-21 179.7 12.2 99 406-520 334-432 (585)
280 TIGR02770 nickel_nikD nickel i 99.7 5.1E-17 1.1E-21 159.2 10.3 88 436-526 1-94 (230)
281 COG3840 ThiQ ABC-type thiamine 99.7 1.7E-17 3.6E-22 150.9 6.1 94 407-520 2-95 (231)
282 TIGR02203 MsbA_lipidA lipid A 99.7 3.7E-17 8E-22 181.1 10.2 112 406-533 330-441 (571)
283 PRK09544 znuC high-affinity zi 99.7 7.2E-17 1.6E-21 160.2 11.1 87 406-519 4-92 (251)
284 PRK03695 vitamin B12-transport 99.7 4.3E-17 9.3E-22 161.6 9.3 84 436-521 11-94 (248)
285 COG1132 MdlB ABC-type multidru 99.7 3.9E-17 8.5E-22 180.7 9.7 113 405-535 327-439 (567)
286 PRK10535 macrolide transporter 99.7 1.6E-16 3.4E-21 178.0 14.6 114 406-530 4-120 (648)
287 PF00005 ABC_tran: ABC transpo 99.7 3.3E-17 7.2E-22 147.0 7.4 79 437-516 1-79 (137)
288 KOG0056 Heavy metal exporter H 99.7 1.3E-17 2.9E-22 170.8 5.3 100 404-519 535-634 (790)
289 PRK15056 manganese/iron transp 99.7 7.2E-17 1.5E-21 162.2 10.5 96 406-519 6-103 (272)
290 PLN03130 ABC transporter C fam 99.7 6.3E-17 1.4E-21 195.9 11.5 112 405-534 1236-1347(1622)
291 PRK13546 teichoic acids export 99.7 1.9E-16 4E-21 158.3 12.8 113 405-531 3-120 (264)
292 PRK15134 microcin C ABC transp 99.7 1.5E-16 3.2E-21 174.7 13.1 115 405-530 4-129 (529)
293 PRK15134 microcin C ABC transp 99.7 9.6E-17 2.1E-21 176.1 11.6 115 405-524 274-392 (529)
294 PRK13549 xylose transporter AT 99.7 8E-17 1.7E-21 175.8 10.7 104 405-520 258-365 (506)
295 PLN03232 ABC transporter C fam 99.7 5.7E-17 1.2E-21 196.0 10.4 111 406-534 1234-1344(1495)
296 COG1101 PhnK ABC-type uncharac 99.7 3.6E-17 7.9E-22 152.6 6.6 105 407-522 2-108 (263)
297 TIGR01184 ntrCD nitrate transp 99.7 1.4E-16 3E-21 156.2 10.9 79 437-521 1-79 (230)
298 PRK11819 putative ABC transpor 99.7 1E-16 2.2E-21 176.8 11.2 91 404-520 4-94 (556)
299 PTZ00243 ABC transporter; Prov 99.7 1.1E-16 2.4E-21 193.4 11.3 111 406-534 1308-1418(1560)
300 TIGR00957 MRP_assoc_pro multi 99.7 1.2E-16 2.7E-21 193.4 11.2 112 405-534 1283-1394(1522)
301 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.6E-16 3.5E-21 175.1 11.2 89 405-519 3-91 (552)
302 KOG0061 Transporter, ABC super 99.7 2.8E-16 6E-21 173.9 13.0 118 405-536 24-147 (613)
303 KOG0055 Multidrug/pheromone ex 99.7 7.8E-17 1.7E-21 183.0 8.7 103 404-520 348-450 (1228)
304 COG1123 ATPase components of v 99.7 3.5E-16 7.6E-21 166.2 12.8 119 404-526 278-399 (539)
305 PTZ00265 multidrug resistance 99.7 1E-16 2.2E-21 192.4 9.7 114 405-534 1164-1331(1466)
306 KOG0055 Multidrug/pheromone ex 99.7 1.1E-16 2.4E-21 181.7 9.1 114 406-535 987-1100(1228)
307 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.7E-16 3.7E-21 154.9 8.8 95 407-529 23-117 (224)
308 PRK15064 ABC transporter ATP-b 99.7 2.4E-16 5.1E-21 173.1 10.9 86 407-519 2-87 (530)
309 PRK10522 multidrug transporter 99.6 2.5E-16 5.5E-21 173.5 9.8 95 406-516 322-416 (547)
310 cd03214 ABC_Iron-Siderophores_ 99.6 1.7E-16 3.7E-21 149.6 6.8 79 409-503 2-80 (180)
311 PRK11819 putative ABC transpor 99.6 5.2E-16 1.1E-20 171.2 11.1 95 404-525 322-417 (556)
312 PTZ00265 multidrug resistance 99.6 3.3E-16 7.2E-21 188.0 9.8 101 406-520 382-483 (1466)
313 PRK10762 D-ribose transporter 99.6 5.8E-16 1.3E-20 168.8 10.6 85 436-520 267-354 (501)
314 COG4618 ArpD ABC-type protease 99.6 4.4E-16 9.6E-21 161.3 8.8 105 402-521 330-434 (580)
315 PRK10938 putative molybdenum t 99.6 5.1E-16 1.1E-20 168.9 9.5 97 406-518 3-107 (490)
316 PRK15064 ABC transporter ATP-b 99.6 9.9E-16 2.2E-20 168.2 11.8 89 405-520 318-408 (530)
317 PRK15177 Vi polysaccharide exp 99.6 6.9E-16 1.5E-20 149.4 9.3 83 436-532 2-85 (213)
318 cd03291 ABCC_CFTR1 The CFTR su 99.6 1.3E-15 2.8E-20 153.5 11.0 85 404-520 37-121 (282)
319 TIGR01194 cyc_pep_trnsptr cycl 99.6 6.3E-16 1.4E-20 170.6 9.6 101 405-517 336-436 (555)
320 COG4167 SapF ABC-type antimicr 99.6 4.6E-16 1E-20 141.5 6.7 112 406-524 4-117 (267)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.2E-15 2.6E-20 168.3 11.3 95 404-525 320-415 (552)
322 PRK10982 galactose/methyl gala 99.6 1.1E-15 2.3E-20 166.4 10.8 95 405-516 249-346 (491)
323 PRK10938 putative molybdenum t 99.6 8E-16 1.7E-20 167.4 9.8 100 404-518 258-360 (490)
324 TIGR01271 CFTR_protein cystic 99.6 1.3E-15 2.7E-20 184.2 12.3 100 405-520 1216-1315(1490)
325 COG0396 sufC Cysteine desulfur 99.6 2.5E-15 5.3E-20 142.1 11.4 104 406-523 3-108 (251)
326 COG4136 ABC-type uncharacteriz 99.6 5.3E-16 1.1E-20 136.9 6.4 104 407-528 3-111 (213)
327 PRK13545 tagH teichoic acids e 99.6 3.2E-15 6.9E-20 159.6 12.6 101 405-531 20-120 (549)
328 PRK11288 araG L-arabinose tran 99.6 1.2E-15 2.6E-20 166.4 9.6 86 435-520 267-355 (501)
329 COG4987 CydC ABC-type transpor 99.6 8.3E-16 1.8E-20 160.6 7.5 100 406-520 336-435 (573)
330 TIGR00956 3a01205 Pleiotropic 99.6 1.9E-15 4.2E-20 181.2 11.3 90 433-524 73-166 (1394)
331 PRK11147 ABC transporter ATPas 99.6 2.2E-15 4.7E-20 168.7 10.7 90 404-520 317-407 (635)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 2.3E-15 4.9E-20 136.7 8.8 70 407-503 1-70 (144)
333 PLN03140 ABC transporter G fam 99.6 2E-15 4.3E-20 180.8 10.4 92 430-525 174-268 (1470)
334 TIGR00954 3a01203 Peroxysomal 99.6 3E-15 6.4E-20 168.0 10.9 90 405-521 450-539 (659)
335 PRK15439 autoinducer 2 ABC tra 99.6 3.1E-15 6.8E-20 163.4 10.7 96 405-520 267-365 (510)
336 COG0444 DppD ABC-type dipeptid 99.6 5.8E-15 1.3E-19 146.9 11.4 108 407-525 2-119 (316)
337 cd00267 ABC_ATPase ABC (ATP-bi 99.6 6.7E-15 1.5E-19 135.5 9.4 85 409-516 2-86 (157)
338 COG1119 ModF ABC-type molybden 99.6 5.8E-15 1.3E-19 141.1 7.3 98 404-517 29-129 (257)
339 cd03237 ABC_RNaseL_inhibitor_d 99.5 1.3E-14 2.9E-19 143.5 9.9 74 436-522 9-87 (246)
340 KOG0054 Multidrug resistance-a 99.5 9.6E-15 2.1E-19 169.7 8.7 102 404-520 1136-1237(1381)
341 COG4148 ModC ABC-type molybdat 99.5 5.2E-15 1.1E-19 143.1 5.4 83 439-521 16-101 (352)
342 cd03222 ABC_RNaseL_inhibitor T 99.5 1.7E-14 3.6E-19 135.3 8.3 74 410-516 4-77 (177)
343 PRK13409 putative ATPase RIL; 99.5 3.1E-14 6.6E-19 157.3 11.6 88 404-521 338-425 (590)
344 COG1123 ATPase components of v 99.5 6.5E-14 1.4E-18 149.1 12.3 119 405-534 4-132 (539)
345 PRK10636 putative ABC transpor 99.5 3.3E-14 7.2E-19 159.0 10.1 88 404-518 310-399 (638)
346 TIGR03771 anch_rpt_ABC anchore 99.5 2.4E-14 5.3E-19 139.6 7.8 73 442-520 1-75 (223)
347 TIGR01187 potA spermidine/putr 99.5 2.8E-14 6E-19 147.0 7.9 76 452-530 1-76 (325)
348 PRK10636 putative ABC transpor 99.5 4.8E-14 1E-18 157.7 10.4 62 407-483 2-63 (638)
349 COG4608 AppF ABC-type oligopep 99.5 3.8E-14 8.2E-19 138.2 8.1 76 405-486 3-78 (268)
350 COG4778 PhnL ABC-type phosphon 99.5 2.1E-14 4.6E-19 129.3 5.8 122 406-535 4-132 (235)
351 PLN03073 ABC transporter F fam 99.5 1E-13 2.2E-18 156.1 12.5 86 405-518 507-592 (718)
352 cd03236 ABC_RNaseL_inhibitor_d 99.5 2.5E-14 5.5E-19 142.1 6.7 93 410-520 4-110 (255)
353 COG0488 Uup ATPase components 99.5 1.3E-13 2.9E-18 148.9 10.0 87 406-519 3-89 (530)
354 cd00820 PEPCK_HprK Phosphoenol 99.5 7.1E-14 1.5E-18 118.9 5.8 75 435-519 3-77 (107)
355 PRK11147 ABC transporter ATPas 99.5 2.1E-13 4.5E-18 152.8 10.7 62 406-482 3-64 (635)
356 TIGR00957 MRP_assoc_pro multi 99.4 2.4E-13 5.3E-18 165.0 10.9 87 406-520 636-722 (1522)
357 PF12698 ABC2_membrane_3: ABC- 99.4 6.8E-14 1.5E-18 143.0 5.1 271 14-328 60-344 (344)
358 COG4172 ABC-type uncharacteriz 99.4 8.4E-13 1.8E-17 133.6 11.5 126 403-533 273-404 (534)
359 PRK13409 putative ATPase RIL; 99.4 2E-13 4.2E-18 151.0 5.4 84 435-519 88-186 (590)
360 PLN03232 ABC transporter C fam 99.4 6.7E-13 1.5E-17 160.9 9.4 90 406-521 614-703 (1495)
361 PLN03130 ABC transporter C fam 99.4 7.5E-13 1.6E-17 160.9 9.1 89 406-521 614-703 (1622)
362 TIGR01271 CFTR_protein cystic 99.4 1.2E-12 2.7E-17 158.5 10.1 72 435-521 440-511 (1490)
363 COG4107 PhnK ABC-type phosphon 99.4 6.8E-13 1.5E-17 120.1 5.3 88 404-506 4-99 (258)
364 COG5265 ATM1 ABC-type transpor 99.4 5.2E-13 1.1E-17 135.9 5.0 99 405-519 261-359 (497)
365 COG4615 PvdE ABC-type sideroph 99.3 5.5E-13 1.2E-17 134.5 4.5 96 405-515 321-416 (546)
366 COG0488 Uup ATPase components 99.3 5.1E-12 1.1E-16 136.7 9.5 92 404-521 319-411 (530)
367 PLN03073 ABC transporter F fam 99.2 2.9E-12 6.3E-17 144.4 3.6 65 405-484 176-243 (718)
368 PTZ00243 ABC transporter; Prov 99.2 1.1E-11 2.5E-16 150.4 8.8 72 434-520 673-744 (1560)
369 COG4172 ABC-type uncharacteriz 99.2 6.3E-11 1.4E-15 120.2 9.9 121 404-535 4-135 (534)
370 cd03238 ABC_UvrA The excision 99.2 2.4E-11 5.2E-16 113.9 5.6 60 434-503 8-67 (176)
371 KOG0054 Multidrug resistance-a 99.1 1E-10 2.3E-15 136.5 10.4 92 403-521 515-606 (1381)
372 COG4138 BtuD ABC-type cobalami 99.0 1.2E-10 2.6E-15 105.8 3.9 83 436-520 14-96 (248)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.0 1.7E-10 3.7E-15 113.9 5.2 87 435-527 16-129 (243)
374 cd03274 ABC_SMC4_euk Eukaryoti 99.0 2.2E-11 4.8E-16 117.8 -3.4 81 406-523 5-86 (212)
375 TIGR03238 dnd_assoc_3 dnd syst 99.0 3.7E-10 8.1E-15 118.7 4.2 64 435-504 20-86 (504)
376 cd03278 ABC_SMC_barmotin Barmo 98.9 4.9E-10 1.1E-14 107.2 2.7 66 438-508 14-88 (197)
377 PRK07196 fliI flagellum-specif 98.9 1.8E-09 3.9E-14 113.8 5.9 90 435-525 144-241 (434)
378 KOG0065 Pleiotropic drug resis 98.9 1.8E-09 4E-14 123.8 5.6 90 433-526 127-219 (1391)
379 COG1129 MglA ABC-type sugar tr 98.8 1.1E-08 2.3E-13 108.8 10.1 85 436-520 274-361 (500)
380 COG3845 ABC-type uncharacteriz 98.8 2.3E-08 5.1E-13 104.5 12.3 105 404-522 255-363 (501)
381 KOG0060 Long-chain acyl-CoA tr 98.8 1.2E-08 2.7E-13 108.0 9.1 108 404-534 431-543 (659)
382 KOG2355 Predicted ABC-type tra 98.8 1.5E-08 3.3E-13 94.5 6.9 69 404-486 11-79 (291)
383 TIGR02858 spore_III_AA stage I 98.8 5.9E-09 1.3E-13 104.1 4.4 68 448-516 112-179 (270)
384 KOG0927 Predicted transporter 98.7 8.3E-09 1.8E-13 108.5 4.1 66 404-483 387-452 (614)
385 PRK06002 fliI flagellum-specif 98.7 4.3E-08 9.4E-13 103.6 8.6 88 404-506 137-230 (450)
386 COG4178 ABC-type uncharacteriz 98.7 6E-08 1.3E-12 105.2 9.3 103 404-533 390-492 (604)
387 cd03283 ABC_MutS-like MutS-lik 98.7 2.7E-09 5.9E-14 102.2 -0.9 68 435-519 15-82 (199)
388 cd03240 ABC_Rad50 The catalyti 98.6 7E-09 1.5E-13 99.8 1.0 74 441-519 17-99 (204)
389 cd01130 VirB11-like_ATPase Typ 98.6 2.8E-08 6E-13 94.2 5.0 84 436-523 14-99 (186)
390 PRK06995 flhF flagellar biosyn 98.6 1.9E-08 4.1E-13 107.6 4.1 73 436-529 245-317 (484)
391 COG1245 Predicted ATPase, RNas 98.6 8.8E-08 1.9E-12 99.0 6.8 84 405-519 341-424 (591)
392 cd03273 ABC_SMC2_euk Eukaryoti 98.5 1.4E-08 3.1E-13 100.9 0.2 73 447-519 25-109 (251)
393 KOG0066 eIF2-interacting prote 98.5 7.7E-08 1.7E-12 98.6 5.1 102 404-533 584-686 (807)
394 cd03270 ABC_UvrA_I The excisio 98.5 5.3E-08 1.1E-12 95.2 3.8 34 434-467 8-42 (226)
395 KOG0064 Peroxisomal long-chain 98.4 4.5E-07 9.8E-12 95.2 7.0 102 406-534 481-587 (728)
396 PRK09270 nucleoside triphospha 98.4 3.5E-07 7.6E-12 89.6 5.5 73 447-525 33-109 (229)
397 cd03279 ABC_sbcCD SbcCD and ot 98.4 1.6E-07 3.5E-12 90.9 3.0 80 406-507 5-87 (213)
398 PRK07721 fliI flagellum-specif 98.4 4.5E-07 9.8E-12 96.5 6.3 71 435-506 147-224 (438)
399 cd03271 ABC_UvrA_II The excisi 98.4 3.1E-07 6.7E-12 91.4 4.6 91 435-525 9-145 (261)
400 PRK09825 idnK D-gluconate kina 98.4 2.5E-07 5.4E-12 86.9 3.7 69 446-520 2-70 (176)
401 TIGR00554 panK_bact pantothena 98.4 3.5E-07 7.6E-12 92.2 4.9 75 448-525 63-139 (290)
402 KOG0927 Predicted transporter 98.4 5.3E-07 1.1E-11 95.2 6.2 62 404-480 73-134 (614)
403 PRK10416 signal recognition pa 98.3 9.5E-07 2.1E-11 90.5 5.2 76 445-520 112-192 (318)
404 PRK10078 ribose 1,5-bisphospho 98.2 1.3E-06 2.7E-11 82.8 4.8 82 447-533 2-84 (186)
405 COG2401 ABC-type ATPase fused 98.2 8.1E-07 1.8E-11 91.0 3.6 49 433-481 395-451 (593)
406 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.1E-06 2.5E-11 89.0 4.0 85 438-525 153-245 (287)
407 COG4170 SapD ABC-type antimicr 98.2 1.9E-06 4.1E-11 80.9 4.9 89 407-506 4-99 (330)
408 cd01136 ATPase_flagellum-secre 98.1 3.6E-06 7.9E-11 86.1 5.5 49 435-484 58-106 (326)
409 PRK08149 ATP synthase SpaL; Va 98.1 3.6E-06 7.8E-11 88.9 5.4 69 435-504 140-214 (428)
410 PRK07594 type III secretion sy 98.1 4.2E-06 9.2E-11 88.5 5.5 65 405-484 128-192 (433)
411 TIGR00235 udk uridine kinase. 98.1 1.4E-06 3E-11 84.0 1.5 73 445-519 4-77 (207)
412 cd03280 ABC_MutS2 MutS2 homolo 98.0 3.7E-06 8.1E-11 80.5 4.3 42 436-477 16-66 (200)
413 KOG0062 ATPase component of AB 98.0 3.9E-06 8.5E-11 88.3 4.6 51 404-469 78-128 (582)
414 PRK01889 GTPase RsgA; Reviewed 98.0 3.3E-06 7.2E-11 88.1 3.8 79 436-519 184-262 (356)
415 cd03284 ABC_MutS1 MutS1 homolo 98.0 3.3E-06 7.2E-11 81.9 3.3 69 435-518 19-87 (216)
416 cd03282 ABC_MSH4_euk MutS4 hom 98.0 5.5E-06 1.2E-10 79.7 4.1 35 435-469 17-51 (204)
417 TIGR02546 III_secr_ATP type II 98.0 1.3E-05 2.7E-10 85.3 7.0 76 435-511 134-214 (422)
418 PRK09862 putative ATP-dependen 98.0 5.9E-06 1.3E-10 89.3 4.5 61 410-485 188-248 (506)
419 PRK07960 fliI flagellum-specif 98.0 5.4E-06 1.2E-10 87.7 4.1 71 435-506 164-239 (455)
420 PRK06315 type III secretion sy 97.9 7.1E-06 1.5E-10 87.1 4.6 48 434-482 152-200 (442)
421 KOG0062 ATPase component of AB 97.9 7.8E-06 1.7E-10 86.1 4.6 106 404-534 360-465 (582)
422 PRK14722 flhF flagellar biosyn 97.9 7.1E-06 1.5E-10 85.5 4.2 74 435-529 125-198 (374)
423 cd02025 PanK Pantothenate kina 97.9 7.2E-06 1.6E-10 79.8 4.0 71 449-525 1-76 (220)
424 PRK09099 type III secretion sy 97.9 1E-05 2.3E-10 85.9 5.5 49 435-484 152-200 (441)
425 PF13555 AAA_29: P-loop contai 97.9 1.4E-05 3E-10 61.1 3.9 39 437-475 12-51 (62)
426 PRK14723 flhF flagellar biosyn 97.9 1.3E-05 2.8E-10 90.0 5.0 41 436-476 174-214 (767)
427 TIGR03498 FliI_clade3 flagella 97.9 1.6E-05 3.5E-10 84.1 5.2 50 435-485 129-178 (418)
428 PRK14721 flhF flagellar biosyn 97.9 1.2E-05 2.7E-10 84.9 4.3 28 444-471 188-215 (420)
429 TIGR01026 fliI_yscN ATPase Fli 97.8 1.5E-05 3.2E-10 85.1 4.8 49 435-484 152-200 (440)
430 TIGR03497 FliI_clade2 flagella 97.8 2E-05 4.4E-10 83.3 5.7 71 435-506 126-203 (413)
431 PRK06793 fliI flagellum-specif 97.8 2.1E-05 4.6E-10 83.3 5.8 65 406-485 130-194 (432)
432 PRK05688 fliI flagellum-specif 97.8 1.3E-05 2.8E-10 85.2 3.7 39 435-474 157-195 (451)
433 PRK00349 uvrA excinuclease ABC 97.8 3.7E-05 8E-10 89.1 7.6 32 436-467 624-655 (943)
434 cd03243 ABC_MutS_homologs The 97.8 1.6E-05 3.5E-10 76.3 3.9 32 438-469 20-51 (202)
435 PRK00098 GTPase RsgA; Reviewed 97.8 3.1E-05 6.8E-10 78.9 6.2 76 446-523 163-246 (298)
436 cd03275 ABC_SMC1_euk Eukaryoti 97.8 1.9E-05 4.2E-10 78.2 4.3 34 448-481 23-56 (247)
437 PRK00300 gmk guanylate kinase; 97.8 1.6E-05 3.4E-10 76.3 3.2 39 445-485 3-53 (205)
438 PLN02318 phosphoribulokinase/u 97.8 2.2E-05 4.7E-10 85.3 4.6 65 448-521 66-130 (656)
439 cd03287 ABC_MSH3_euk MutS3 hom 97.8 2.1E-05 4.7E-10 76.5 4.1 44 435-478 19-63 (222)
440 TIGR03496 FliI_clade1 flagella 97.8 3.2E-05 6.9E-10 81.8 5.5 49 435-484 126-174 (411)
441 PRK05922 type III secretion sy 97.8 3.2E-05 7E-10 81.9 5.5 49 435-484 146-194 (434)
442 PLN02796 D-glycerate 3-kinase 97.8 9.7E-06 2.1E-10 83.1 1.5 51 436-486 81-142 (347)
443 TIGR02322 phosphon_PhnN phosph 97.7 7.9E-05 1.7E-09 69.8 7.1 67 447-514 1-82 (179)
444 cd00879 Sar1 Sar1 subfamily. 97.7 2.7E-05 5.7E-10 73.5 3.6 49 436-485 9-65 (190)
445 PRK08472 fliI flagellum-specif 97.7 3E-05 6.5E-10 82.2 4.3 51 435-486 146-196 (434)
446 COG1245 Predicted ATPase, RNas 97.7 2.8E-05 6.2E-10 80.9 3.9 35 444-478 97-131 (591)
447 PRK03846 adenylylsulfate kinas 97.7 3.3E-05 7.1E-10 73.9 3.7 56 445-505 22-78 (198)
448 TIGR02788 VirB11 P-type DNA tr 97.6 2.7E-05 5.9E-10 79.7 3.0 77 440-520 137-214 (308)
449 cd03276 ABC_SMC6_euk Eukaryoti 97.6 3.1E-05 6.7E-10 74.1 2.6 70 436-509 11-82 (198)
450 PRK08972 fliI flagellum-specif 97.6 5.4E-05 1.2E-09 80.0 4.6 39 435-474 151-189 (444)
451 PRK04863 mukB cell division pr 97.6 6.3E-05 1.4E-09 90.7 5.6 48 436-484 17-64 (1486)
452 cd02026 PRK Phosphoribulokinas 97.6 4.9E-05 1.1E-09 76.4 3.6 54 449-505 1-54 (273)
453 TIGR00101 ureG urease accessor 97.6 6E-05 1.3E-09 72.2 3.7 57 449-507 3-59 (199)
454 TIGR00606 rad50 rad50. This fa 97.5 9.4E-05 2E-09 89.8 6.0 39 447-485 28-71 (1311)
455 TIGR00767 rho transcription te 97.5 0.00015 3.3E-09 75.7 6.6 56 405-474 129-195 (415)
456 TIGR02524 dot_icm_DotB Dot/Icm 97.5 9.8E-05 2.1E-09 77.0 5.1 60 445-506 132-194 (358)
457 PRK11545 gntK gluconate kinase 97.5 2.9E-05 6.2E-10 72.0 1.0 63 453-522 1-64 (163)
458 cd03285 ABC_MSH2_euk MutS2 hom 97.5 0.00011 2.3E-09 71.7 4.6 34 435-468 18-51 (222)
459 PRK06820 type III secretion sy 97.5 0.00014 3.1E-09 77.2 5.5 49 434-483 151-199 (440)
460 cd04155 Arl3 Arl3 subfamily. 97.4 0.00014 3E-09 67.3 4.5 37 449-485 16-60 (173)
461 TIGR01360 aden_kin_iso1 adenyl 97.4 1.4E-05 3.1E-10 75.3 -2.2 69 447-520 3-74 (188)
462 PRK06936 type III secretion sy 97.4 0.00013 2.7E-09 77.5 4.7 40 435-475 151-190 (439)
463 TIGR00368 Mg chelatase-related 97.4 7.7E-05 1.7E-09 81.0 3.1 51 435-485 199-249 (499)
464 PRK08533 flagellar accessory p 97.4 7.8E-05 1.7E-09 73.1 2.7 41 444-484 21-62 (230)
465 PRK00635 excinuclease ABC subu 97.4 0.00013 2.9E-09 88.7 5.0 42 435-480 949-990 (1809)
466 PRK00064 recF recombination pr 97.3 0.00048 1E-08 72.2 7.5 86 436-523 13-139 (361)
467 TIGR00630 uvra excinuclease AB 97.3 0.00015 3.3E-09 83.9 4.1 30 436-465 622-651 (924)
468 PLN02165 adenylate isopentenyl 97.3 0.00027 5.9E-09 72.3 5.3 42 446-487 42-87 (334)
469 cd02023 UMPK Uridine monophosp 97.3 0.00014 3E-09 69.4 2.5 34 449-484 1-34 (198)
470 PRK00635 excinuclease ABC subu 97.3 0.00022 4.7E-09 86.8 4.7 38 435-472 609-655 (1809)
471 TIGR00025 Mtu_efflux ABC trans 97.2 0.11 2.5E-06 50.6 22.8 141 132-278 54-197 (232)
472 cd04159 Arl10_like Arl10-like 97.2 0.00026 5.6E-09 63.7 3.6 37 450-486 2-52 (159)
473 PF13476 AAA_23: AAA domain; P 97.2 0.00023 5E-09 67.3 3.5 35 436-471 9-43 (202)
474 PLN03046 D-glycerate 3-kinase; 97.2 0.00027 5.8E-09 74.0 3.8 39 448-486 213-254 (460)
475 TIGR03263 guanyl_kin guanylate 97.2 0.00028 6.1E-09 66.0 3.3 26 447-472 1-26 (180)
476 cd04104 p47_IIGP_like p47 (47- 97.1 0.00028 6.1E-09 67.3 3.1 33 450-482 4-36 (197)
477 PRK10463 hydrogenase nickel in 97.1 0.00038 8.2E-09 70.0 3.9 40 445-484 102-141 (290)
478 PTZ00132 GTP-binding nuclear p 97.1 0.00058 1.2E-08 66.0 5.1 38 449-486 11-66 (215)
479 cd03286 ABC_MSH6_euk MutS6 hom 97.1 0.00047 1E-08 67.0 4.3 36 435-470 18-53 (218)
480 TIGR01247 drrB daunorubicin re 97.1 0.18 4E-06 49.2 22.6 135 135-276 68-203 (236)
481 PF03193 DUF258: Protein of un 97.1 0.00045 9.8E-09 63.5 3.5 34 446-479 34-67 (161)
482 TIGR00750 lao LAO/AO transport 97.0 0.00028 6.1E-09 72.0 2.0 50 435-484 22-71 (300)
483 PRK00889 adenylylsulfate kinas 97.0 0.0005 1.1E-08 64.2 3.0 40 445-484 2-42 (175)
484 PRK06731 flhF flagellar biosyn 96.9 0.00036 7.8E-09 69.8 1.8 49 436-484 57-115 (270)
485 PRK07429 phosphoribulokinase; 96.9 0.00071 1.5E-08 69.7 3.9 53 449-505 10-63 (327)
486 cd01876 YihA_EngB The YihA (En 96.9 0.00053 1.1E-08 62.3 2.5 28 450-477 2-31 (170)
487 KOG0063 RNAse L inhibitor, ABC 96.9 0.0018 3.9E-08 67.3 6.3 41 436-476 351-396 (592)
488 TIGR01069 mutS2 MutS2 family p 96.9 0.00054 1.2E-08 78.3 2.5 38 439-476 313-352 (771)
489 KOG0066 eIF2-interacting prote 96.8 0.0011 2.4E-08 68.8 4.2 65 406-485 264-330 (807)
490 PRK05480 uridine/cytidine kina 96.8 0.0008 1.7E-08 64.8 3.0 28 445-472 4-31 (209)
491 smart00382 AAA ATPases associa 96.8 0.0019 4.1E-08 56.3 5.0 40 446-485 1-41 (148)
492 PRK08927 fliI flagellum-specif 96.8 0.0012 2.6E-08 70.1 4.3 39 437-475 148-186 (442)
493 TIGR00017 cmk cytidylate kinas 96.8 0.0006 1.3E-08 66.2 1.8 55 449-503 4-69 (217)
494 TIGR01291 nodJ ABC-2 type tran 96.8 0.43 9.3E-06 47.3 22.3 136 136-278 81-217 (253)
495 cd01131 PilT Pilus retraction 96.8 0.0022 4.7E-08 61.4 5.6 37 449-485 3-40 (198)
496 cd01888 eIF2_gamma eIF2-gamma 96.8 0.0013 2.8E-08 63.1 4.0 30 449-478 2-32 (203)
497 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0012 2.6E-08 64.0 3.7 34 436-469 18-51 (213)
498 PRK13477 bifunctional pantoate 96.7 0.0014 3.1E-08 71.1 4.5 44 435-479 273-319 (512)
499 cd01128 rho_factor Transcripti 96.7 0.0015 3.3E-08 64.6 4.1 41 436-477 6-46 (249)
500 cd03227 ABC_Class2 ABC-type Cl 96.7 0.00092 2E-08 61.7 2.3 38 438-475 12-49 (162)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.4e-72 Score=669.55 Aligned_cols=494 Identities=23% Similarity=0.381 Sum_probs=380.2
Q ss_pred CCCCceeecCCHHHHHHHHH--cCCCcceEEEEEecCC------CCeeEEEEEEccccc--cC--------CCC----CC
Q 009374 9 IPSSKVMSFRTAAEVDDWLY--SNPMRCPGALHFVDRN------ATTISYGIQTNSTPI--EM--------RGR----YE 66 (536)
Q Consensus 9 ~~~~~~~~f~s~~~~~~~~~--~~~~~~~~av~F~~~~------~~~~~Y~i~~n~~~~--~~--------~~~----~~ 66 (536)
+..|++++++||++|++... -+...++|||+|++.. +.+++|+||+|.+.. ++ .++ ..
T Consensus 520 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~ 599 (2272)
T TIGR01257 520 LVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVE 599 (2272)
T ss_pred eeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccc
Confidence 56789999999999999863 2445689999997652 368999999998732 11 011 12
Q ss_pred CCccc--hhhHHHHHHHHHHHHHHhCCCCcceeeeeeccCCCchhHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009374 67 DPTFK--FQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIF---SAVARIGPTFFLAVAMFGFVFQISSLVTEK 141 (536)
Q Consensus 67 ~~~~~--~~~~lq~ai~~ai~~~~~~~~~~~~~~~~~~~p~p~~~~~---~~~~~~~~~f~~~~~~~~~~~~v~~iV~EK 141 (536)
+|.|+ .|+++|.+||+||++..++.. ....+..++||+|++... ..+..++|+|+++++++++..+++.+|.||
T Consensus 600 ~~~Y~~~GFl~lQ~ai~~aii~~~~~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EK 678 (2272)
T TIGR01257 600 DFRYIWGGFAYLQDMVEQGITRSQMQAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEK 678 (2272)
T ss_pred cccHHHhhHHHHHHHHHHHHHHhhcCCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34453 589999999999999877533 345688999999997643 345778899999999999999999999999
Q ss_pred HHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009374 142 ELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFIS 221 (536)
Q Consensus 142 e~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~~~S~fF~ 221 (536)
|.|+||.|+||||++++||+|||+..++..++++++++++. ....+|..+++.++|+++++|++++|+|||++|+||+
T Consensus 679 E~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il--~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFs 756 (2272)
T TIGR01257 679 ELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFI--MHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFS 756 (2272)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998888776655433 2345788899999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHHHhcCCCCCccccccCCccCCCCC
Q 009374 222 KSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPND 301 (536)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~g~~w~~~~~~~~~~ 301 (536)
|++.|+.++.+++++.+++..+. +.+.+..+...++++|++||.+|+.|+..++..+ .++.|++|+++...+...
T Consensus 757 ka~~A~~~~~li~f~~~lp~~~~---~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e--~~~~G~~w~n~~~~~~~~ 831 (2272)
T TIGR01257 757 KASLAAACSGVIYFTLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFE--EQGLGLQWSNIGNSPLEG 831 (2272)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH---hhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHh--hhCCCcccccccccccCC
Confidence 99999999888877765544321 1233334556788899999999999999998764 346789999987654332
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccccCCcCCCCCCccccCccccccCCCCCCCCCCCC
Q 009374 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPD 381 (536)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (536)
+ .++++..+.||++|+++|++|+||+|+|+|++||++|||+|+++++||.++.+....... .....+.. ....+
T Consensus 832 d--~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~---~~~~~~~~-~~~~~ 905 (2272)
T TIGR01257 832 D--EFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREER---ALEKTEPL-TEEME 905 (2272)
T ss_pred C--CccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccc---cccccccc-ccccc
Confidence 2 357777889999999999999999999999999999999999999999764211000000 00000000 00000
Q ss_pred ChhhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchh
Q 009374 382 DEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKT 461 (536)
Q Consensus 382 ~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKS 461 (536)
+.+..+... ....++++.+....++++||+|.|++++ +.||+|+||++++||+++|+||||||||
T Consensus 906 ~~~~~~~~~--~~~~E~~~~~~~~~L~I~nLsK~y~~~~-------------k~aL~~lsl~I~~Gei~aLLG~NGAGKS 970 (2272)
T TIGR01257 906 DPEHPEGIN--DSFFERELPGLVPGVCVKNLVKIFEPSG-------------RPAVDRLNITFYENQITAFLGHNGAGKT 970 (2272)
T ss_pred ccccccccc--ccccccccCCCCceEEEEeEEEEecCCC-------------ceEEEeeEEEEcCCcEEEEECCCCChHH
Confidence 000000000 0000111222345899999999996321 2699999999999999999999999999
Q ss_pred HHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 462 TTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 462 Tll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
||+++|+|+.+|++|+|+++|+++. .+..++|+.+|||||++.+++++||+|||.++++++|.+.++.++
T Consensus 971 TLLkiLaGLl~PtsG~I~i~G~dI~--~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~ 1040 (2272)
T TIGR01257 971 TTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL 1040 (2272)
T ss_pred HHHHHHhcCCCCCceEEEECCEECc--chHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 9999999999999999999999984 356677889999999999999999999999999999987655443
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.3e-49 Score=466.49 Aligned_cols=408 Identities=23% Similarity=0.364 Sum_probs=285.9
Q ss_pred hhhHHH-HHHHHHHHHHHhCCC----CcceeeeeeccCCCchhHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009374 72 FQIPLQ-LAAEREIARSLVGDP----NFSWVVGLKEFAHPPGEIFS------AVARIGPTFFLAVAMFGFVFQISSLVTE 140 (536)
Q Consensus 72 ~~~~lq-~ai~~ai~~~~~~~~----~~~~~~~~~~~p~p~~~~~~------~~~~~~~~f~~~~~~~~~~~~v~~iV~E 140 (536)
+.+|+- +.+++||++...++. +..+++.++|+|.+..+... .......+++++...+....++..+|.|
T Consensus 1625 Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~E 1704 (2272)
T TIGR01257 1625 HALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQE 1704 (2272)
T ss_pred cHHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehH
Confidence 345554 667899999875422 35778888888876433111 1111112222222222233445668999
Q ss_pred HHHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-CchHHHHHHHHHHHHHHHHHHHHHHHh
Q 009374 141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN-NSFAVLFLLFFLFELNMTGFAFMFSAF 219 (536)
Q Consensus 141 Ke~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~-~~~~~~~l~~~l~~~s~i~~~~~~S~f 219 (536)
|++|+||+|.++|++..+||+|+|+||++.|++++++++++..+++...|.. .+++.+++++++||+|.|+++|++|++
T Consensus 1705 R~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~Sfl 1784 (2272)
T TIGR01257 1705 RVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFL 1784 (2272)
T ss_pred HhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888888887666654 567788899999999999999999999
Q ss_pred cCChhHHHHHHHHH-HHHHHHHHHHHhh-c-CCC---CcccchhhhhhheecChhHHHHHHHHHHHhcCCCCCccccccC
Q 009374 220 ISKSSSSTTIGFSV-FIVGFLTQLVTAF-G-FPY---SDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSR 293 (536)
Q Consensus 220 F~~~~~a~~~~~~~-~~~~~~~~~~~~~-~-~~~---~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~g~~w~~ 293 (536)
|+++.+|.....++ +++|++..++..+ . +.. ....+..+++++.++|++|++.|+..++.......... ....
T Consensus 1785 F~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~-~~~~ 1863 (2272)
T TIGR01257 1785 FDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYA-QFGE 1863 (2272)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHH-hhcc
Confidence 99999997654433 4444433322111 1 111 11124577888999999999999998875421100000 0000
Q ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccccCCcCCCCCCccccCccccccCCCC
Q 009374 294 RAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVP 373 (536)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 373 (536)
.....+...+ ..+..+++|++++++|+++.+++|.-. +. +-|....
T Consensus 1864 ~~~~~~~~~~---~~g~~ll~m~~~~iv~flLl~~ie~~~-----------~~---~~~~~~~----------------- 1909 (2272)
T TIGR01257 1864 EHSANPFQWD---LIGKNLVAMAVEGVVYFLLTLLIQHHF-----------FL---SRWIAEP----------------- 1909 (2272)
T ss_pred cccCCccchh---hccHHHHHHHHHHHHHHHHHHHHHhhh-----------hh---hhhcccc-----------------
Confidence 0000000000 122345678889999999999998521 00 0011110
Q ss_pred CCCCCCCCChhhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEe
Q 009374 374 PMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLL 453 (536)
Q Consensus 374 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~Ll 453 (536)
..+...+||+||.+|+.++.... .....++++||+|.|+++ ++.||+|+||+|++|||+||+
T Consensus 1910 ~~~~~~~eD~DV~~Er~rV~~~~-----~~~~~L~v~nLsK~Y~~~-------------~~~aL~~ISf~I~~GEi~gLL 1971 (2272)
T TIGR01257 1910 AKEPIFDEDDDVAEERQRIISGG-----NKTDILRLNELTKVYSGT-------------SSPAVDRLCVGVRPGECFGLL 1971 (2272)
T ss_pred CcCcCCCchhHHHHHHHHHhccC-----CCCceEEEEEEEEEECCC-------------CceEEEeeEEEEcCCcEEEEE
Confidence 00112368899999998775421 124579999999999642 126999999999999999999
Q ss_pred CCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 454 GPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 454 G~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
||||||||||+|||+|+++|++|+|+++|+++. .+..++|+.+|||||++.+++++|++|||.++++++|++++++++
T Consensus 1972 G~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~--~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~ 2049 (2272)
T TIGR01257 1972 GVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL--TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEK 2049 (2272)
T ss_pred CCCCCcHHHHHHHHhCCCCCCccEEEECCEECc--chHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999999999999999999999984 345567889999999999999999999999999999988765544
Q ss_pred h
Q 009374 534 V 534 (536)
Q Consensus 534 ~ 534 (536)
.
T Consensus 2050 ~ 2050 (2272)
T TIGR01257 2050 V 2050 (2272)
T ss_pred H
Confidence 3
No 3
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1e-45 Score=423.19 Aligned_cols=416 Identities=27% Similarity=0.392 Sum_probs=270.2
Q ss_pred HHHHHHHHHHHHhCCCCcceeeeeeccCCCchhH-HHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhCc
Q 009374 77 QLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEI-FSA-VARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGL 154 (536)
Q Consensus 77 q~ai~~ai~~~~~~~~~~~~~~~~~~~p~p~~~~-~~~-~~~~~~~f~~~~~~~~~~~~v~~iV~EKe~~~k~~m~~mGl 154 (536)
....++++.+...+.. +.+.+.++|.+.... .+. ....++.+++...++.+...+...|.||+.|+|+.|+++|+
T Consensus 260 ~~~~~n~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~ 336 (885)
T KOG0059|consen 260 LGLGSNALRRALNLSG---ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGL 336 (885)
T ss_pred cchHHHHHHHhhcccc---ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 4455677777654322 555666666655432 223 34455566655566666677788999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009374 155 YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVF 234 (536)
Q Consensus 155 ~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~~~S~fF~~~~~a~~~~~~~~ 234 (536)
++++||+++++||++.+++..+++.+++.+++ ++..++..++++++++|+++.++++|++|++|+++.++.+...+..
T Consensus 337 ~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~ 414 (885)
T KOG0059|consen 337 SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYN 414 (885)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHH
Confidence 99999999999999999999988888877777 5666788899999999999999999999999999999876655543
Q ss_pred HHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHHHhcC---CCCCccccccCCccCCCCCccccchHHHH
Q 009374 235 IVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATE---TPQDIGISWSRRAECAPNDTECVITINDI 311 (536)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~---~~~~~g~~w~~~~~~~~~~~~~~~~~~~~ 311 (536)
+++.+...+....+.+.............+.|++.+......+..... .....+..|+....+.. .....
T Consensus 415 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-- 487 (885)
T KOG0059|consen 415 LISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDES-----FYTLL-- 487 (885)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhccccc-----ccchh--
Confidence 333222211111122222222223333334555544433333322111 11234556665443210 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccccCCcCCCCCCccccCccccccCCCCCCCCCCCCChhhHHHHHH
Q 009374 312 YIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENM 391 (536)
Q Consensus 312 ~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 391 (536)
..| .....+.+.+.+...|...+.++.+.+..+.++.....+ ...+..+....|+.|+.+|+++
T Consensus 488 ~~~--------~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~e~~~v~~e~~~ 551 (885)
T KOG0059|consen 488 LEW--------LLPLIGRRYLALVTEGVKDDLFFLLIFVPFKRRMRALTQ--------NMLKGFEPVEVEKLDVARERNR 551 (885)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--------cccCCCcCcchhhHHHHHHHHh
Confidence 001 000000000001111111112222222222211100000 0011112334567778877654
Q ss_pred HHhhhhcCCCCCCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 392 VKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 392 ~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+....... ....++.+++|+|.|+... .|++++|+.|++|||+||+|+|||||||+++|++|+.
T Consensus 552 v~~~~~~~--~~~~~~~~~~L~k~y~~~~--------------~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~ 615 (885)
T KOG0059|consen 552 VETLLFRS--SYSSALVLNNLSKVYGGKD--------------GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET 615 (885)
T ss_pred hhhhhhcc--cccceEEEcceeeeecchh--------------hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc
Confidence 44332211 1135799999999997531 1999999999999999999999999999999999999
Q ss_pred ccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhhC
Q 009374 472 PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA 536 (536)
Q Consensus 472 ~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v~ 536 (536)
+||+|+++++|+++....+.+++++.+|||||+|+||++||+||||++|+++||++++++++.+|
T Consensus 616 ~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~ 680 (885)
T KOG0059|consen 616 KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIE 680 (885)
T ss_pred cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHH
Confidence 99999999999999765567779999999999999999999999999999999999988887764
No 4
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.9e-27 Score=215.50 Aligned_cols=114 Identities=25% Similarity=0.394 Sum_probs=104.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
++++.+|+|+|++. +.|++|+||++++|||+||||+|||||||+|+||++++.|++|.|+++|.|.
T Consensus 1 Ml~v~~l~K~y~~~--------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~ 66 (245)
T COG4555 1 MLEVTDLTKSYGSK--------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT 66 (245)
T ss_pred CeeeeehhhhccCH--------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccc
Confidence 36889999999753 3599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
..+...+|++||+.+-...++..||++|||.+|+++.|+.+.+++++.
T Consensus 67 --~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari 114 (245)
T COG4555 67 --VRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARI 114 (245)
T ss_pred --ccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 456778999999999999999999999999999999999988877654
No 5
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.8e-26 Score=218.00 Aligned_cols=110 Identities=32% Similarity=0.556 Sum_probs=102.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
++++++++|+|++. .||+|+||+|++||++||||+||||||||+|||.|+++||+|+|.++|.++
T Consensus 2 ~L~ie~vtK~Fg~k---------------~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSFGDK---------------KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhccCce---------------eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch
Confidence 57899999999763 699999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
+ ...+.+|||.|.+..|++.|||.|.|.++|++||++.+++++++
T Consensus 67 ~-----~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~ 111 (300)
T COG4152 67 S-----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL 111 (300)
T ss_pred h-----hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH
Confidence 4 25677899999999999999999999999999999999988764
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=8.9e-26 Score=210.54 Aligned_cols=115 Identities=23% Similarity=0.465 Sum_probs=104.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.|+++|++|+|++. ++|+|+|++|.+||+++++||+||||||+||||.|+.+|++|+|.++|.++
T Consensus 2 mi~i~~l~K~fg~~---------------~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSFGDK---------------EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEeCCe---------------EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence 58999999999753 699999999999999999999999999999999999999999999999887
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH-HHhcCCChHhHhhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF-ANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~-~~lkg~~~~~~~~~v 535 (536)
....+..+.|+++|+|+|+..|||++||.||+.+- -..+|++++++++.+
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A 117 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA 117 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHH
Confidence 53347788999999999999999999999999984 578999998887754
No 7
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.6e-26 Score=228.88 Aligned_cols=113 Identities=22% Similarity=0.434 Sum_probs=104.0
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. .||+|+||+|++||+++|+||||||||||||||+|+.+||+|+|.|+|.++
T Consensus 3 ~i~l~~v~K~yg~~---------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcCCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 58999999999752 299999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhhC
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA 536 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v~ 536 (536)
++ ....+|+||+|||+.+|||+|||+||+.|..+++|+++++++++|+
T Consensus 68 t~---l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~ 115 (338)
T COG3839 68 TD---LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK 115 (338)
T ss_pred CC---CChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHH
Confidence 53 4455789999999999999999999999999999999999887763
No 8
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=4.5e-26 Score=216.66 Aligned_cols=114 Identities=24% Similarity=0.416 Sum_probs=106.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+++++|++|.|++. .||+|+||+|++||+++|+||+||||||||+||.++++||+|+|+|+|.++
T Consensus 1 MI~~~nvsk~y~~~---------------~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i 65 (309)
T COG1125 1 MIEFENVSKRYGNK---------------KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI 65 (309)
T ss_pred CceeeeeehhcCCc---------------eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeec
Confidence 37899999999753 699999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
.+ .+..+.|++|||+-|...|||+|||.||+.+--.++|++++++++++
T Consensus 66 ~~-~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~ 114 (309)
T COG1125 66 SD-LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRA 114 (309)
T ss_pred cc-CCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHH
Confidence 74 45678899999999999999999999999999999999999888765
No 9
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=1.9e-25 Score=227.15 Aligned_cols=114 Identities=26% Similarity=0.429 Sum_probs=101.2
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++|.|++. .||+|+||+|++||+++|||||||||||+||||+|+..|++|+|.++|+
T Consensus 3 ~~~l~i~~v~k~yg~~---------------~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~ 67 (352)
T COG3842 3 KPALEIRNVSKSFGDF---------------TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGE 67 (352)
T ss_pred CceEEEEeeeeecCCe---------------eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 3479999999999742 6999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC-ChHhHhhhh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL-PLDSIKSVC 535 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~-~~~~~~~~v 535 (536)
++. +...-+|.+|+++|+.+|||+|||+||+.|..++++. +++++++.|
T Consensus 68 ~i~---~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv 117 (352)
T COG3842 68 DIT---DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117 (352)
T ss_pred ECC---CCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHH
Confidence 995 3455678999999999999999999999999996664 445566654
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=5e-25 Score=222.91 Aligned_cols=107 Identities=34% Similarity=0.632 Sum_probs=98.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. +.||+|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|.++
T Consensus 4 ~i~~~~l~k~~~~~--------------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYGGD--------------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeCCC--------------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeC
Confidence 57889999999731 1699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
. .+..++++++||+||++.+++.|||+|+|.++++++|.+.
T Consensus 70 ~--~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~ 110 (293)
T COG1131 70 V--KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK 110 (293)
T ss_pred c--cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh
Confidence 4 3366789999999999999999999999999999999873
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.5e-25 Score=215.20 Aligned_cols=120 Identities=23% Similarity=0.373 Sum_probs=108.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+|++++++|.|... +.+.+.||+|+||+|++|||+|++|++|||||||+||+.++.+||+|+|.++|.++
T Consensus 1 mI~l~~vsK~~~~~----------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di 70 (339)
T COG1135 1 MIELENVSKTFGQT----------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDL 70 (339)
T ss_pred CeEEEeeeeeeccC----------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEec
Confidence 47899999999763 12345799999999999999999999999999999999999999999999999988
Q ss_pred CC--cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 486 RS--SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~--~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
.. ..+.++.|++||+++||..|+...||.||+.|...+.|+|+++++++|
T Consensus 71 ~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV 122 (339)
T COG1135 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV 122 (339)
T ss_pred ccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHH
Confidence 63 345678899999999999999999999999999999999999988765
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=3.4e-24 Score=202.96 Aligned_cols=117 Identities=24% Similarity=0.423 Sum_probs=104.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.|++++|+|+|+++ .+++|+||+|++||+++++|++|+||||++|.|.|+++|++|+|.++|.
T Consensus 6 ~~~I~vr~v~~~fG~~---------------~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~ 70 (263)
T COG1127 6 EPLIEVRGVTKSFGDR---------------VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE 70 (263)
T ss_pred cceEEEeeeeeecCCE---------------EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCc
Confidence 4679999999999764 6999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCChHhHhhhh
Q 009374 484 SIRSSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLPLDSIKSVC 535 (536)
Q Consensus 484 ~i~~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~~~~~~~~v 535 (536)
++.... +..++|+++|+++|+.+||++|||+||+.|+. ...++|++.+++.|
T Consensus 71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv 125 (263)
T COG1127 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125 (263)
T ss_pred chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH
Confidence 986432 34568999999999999999999999999965 45578888887764
No 13
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=4.9e-25 Score=202.61 Aligned_cols=107 Identities=23% Similarity=0.373 Sum_probs=96.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+.++||.|+|+++ ++|+|+||+|++||++||||||||||||++.|++|+.+|++|+|.++|.||
T Consensus 4 ~L~a~~l~K~y~kr---------------~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSYKKR---------------KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhhCCe---------------eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccc
Confidence 57899999999653 699999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
+...-...+|..+||.||+..+|..|||+||+.....++...
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d 110 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD 110 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc
Confidence 753323567889999999999999999999999988877644
No 14
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=1.2e-23 Score=214.67 Aligned_cols=110 Identities=31% Similarity=0.520 Sum_probs=99.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||+|.|++. .||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~~~---------------~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYGDK---------------LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEECCe---------------EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe
Confidence 479999999999642 69999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
+.. ...+.++.+|||||++.+++++|++|||.++++++|.+.++.
T Consensus 71 ~~~--~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 115 (306)
T PRK13537 71 VPS--RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAA 115 (306)
T ss_pred ccc--chHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 843 334578899999999999999999999999999888775543
No 15
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=4e-24 Score=195.25 Aligned_cols=116 Identities=26% Similarity=0.408 Sum_probs=106.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+|++++++|.|++.+ .||+|+||+|++||..-|.||+||||||++|+|.+..+||+|+|.++|+|+
T Consensus 1 mI~f~~V~k~Y~~g~--------------~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl 66 (223)
T COG2884 1 MIRFENVSKAYPGGR--------------EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDL 66 (223)
T ss_pred CeeehhhhhhcCCCc--------------hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeec
Confidence 378999999998752 699999999999999999999999999999999999999999999999998
Q ss_pred CC--cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 486 RS--SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~--~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
.. ..+..-.|++||+++|+.-|.+++||.||+.+..++.|.+++++++.|
T Consensus 67 ~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV 118 (223)
T COG2884 67 SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV 118 (223)
T ss_pred ccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHH
Confidence 63 345667899999999999999999999999999999999999988776
No 16
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3.1e-23 Score=195.99 Aligned_cols=104 Identities=24% Similarity=0.394 Sum_probs=95.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+..|+.. +||+|+||++++|||++|||+||||||||++.|+|+.+|++|+|.++|+|+
T Consensus 3 mL~v~~l~~~YG~~---------------~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~di 67 (237)
T COG0410 3 MLEVENLSAGYGKI---------------QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI 67 (237)
T ss_pred ceeEEeEeecccce---------------eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeec
Confidence 58899999999753 799999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
+.....+.+|..|+||||...+|++|||+|||.+.+..+
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~ 106 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR 106 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcc
Confidence 865566778999999999999999999999999875544
No 17
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=1e-20 Score=226.31 Aligned_cols=104 Identities=25% Similarity=0.334 Sum_probs=91.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc---cCccEEEEc
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIY 481 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i~i~ 481 (536)
..++++||++.|+.++ +.+.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.++
T Consensus 758 ~~l~~~nl~~~~~~~~-----------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~ 826 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-----------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVN 826 (1394)
T ss_pred ceEEEEeeEEEecCCC-----------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEEC
Confidence 3579999999996321 12369999999999999999999999999999999999997 789999999
Q ss_pred CEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 482 GFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 482 g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
|+++. .+.|+.+|||||++.+++.+||+|+|.+.++++
T Consensus 827 G~~~~-----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~ 864 (1394)
T TIGR00956 827 GRPLD-----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR 864 (1394)
T ss_pred CEECC-----hhhhcceeeecccccCCCCCCHHHHHHHHHHhC
Confidence 99873 246788999999999999999999999988876
No 18
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=8.7e-23 Score=210.67 Aligned_cols=110 Identities=30% Similarity=0.517 Sum_probs=98.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++||+|.|++. .||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~~~---------------~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~ 103 (340)
T PRK13536 39 TVAIDLAGVSKSYGDK---------------AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103 (340)
T ss_pred ceeEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCE
Confidence 3479999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
++.. .....++.+|||||++.+++.+|++||+.+++.++|.+.++
T Consensus 104 ~~~~--~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 148 (340)
T PRK13536 104 PVPA--RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTRE 148 (340)
T ss_pred ECCc--chHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 9843 33467889999999999999999999999998888766443
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=1e-22 Score=195.08 Aligned_cols=112 Identities=24% Similarity=0.377 Sum_probs=97.8
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
+++++++|.|+... ..+.|++++||+|++||+++|+||+||||||||++|.|+.+||+|++.++|.|+.
T Consensus 2 i~~~~v~k~y~~~~-----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLGG-----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccCC-----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcC
Confidence 56899999997542 1257999999999999999999999999999999999999999999999999986
Q ss_pred Cccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
...+ ..+. |++|||++|+..|.++|||+||+.+...+.|.+..
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~ 116 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG 116 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh
Confidence 4332 3344 46799999999999999999999999999988764
No 20
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.88 E-value=2.1e-22 Score=205.17 Aligned_cols=108 Identities=28% Similarity=0.475 Sum_probs=96.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|+|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYGTQ---------------NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEECCE---------------EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 37899999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
.. ...++++.+|||||++.+++.+|++|||.++++++|.+.++
T Consensus 67 ~~--~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 109 (301)
T TIGR03522 67 LQ--NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL 109 (301)
T ss_pred cc--ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 43 33467788999999999999999999999999988876443
No 21
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.2e-23 Score=196.42 Aligned_cols=108 Identities=23% Similarity=0.423 Sum_probs=97.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+++++++|.|++. .|++|+||+|.+||+++|+||+|||||||+|+|+|+.+|++|+|.++|..+
T Consensus 3 ~l~i~~v~~~f~~~---------------~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFGGV---------------EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeCce---------------EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence 58899999999752 699999999999999999999999999999999999999999999999887
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
. .....+||++|++.|+|-+||+||+.+...++|.++++.++.
T Consensus 68 ~------~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~ 110 (248)
T COG1116 68 T------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER 110 (248)
T ss_pred C------CCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHH
Confidence 3 235679999999999999999999999999999777655443
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.7e-22 Score=205.99 Aligned_cols=113 Identities=26% Similarity=0.368 Sum_probs=99.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 4 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~ 68 (351)
T PRK11432 4 KNFVVLKNITKRFGSN---------------TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE 68 (351)
T ss_pred CcEEEEEeEEEEECCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCE
Confidence 3479999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
++.. ....++++|||||+..+|+++||+||+.+..+.++.+++++++.
T Consensus 69 ~i~~---~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~ 116 (351)
T PRK11432 69 DVTH---RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR 116 (351)
T ss_pred ECCC---CCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH
Confidence 9853 22346789999999999999999999999888888776655443
No 23
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.3e-22 Score=193.16 Aligned_cols=102 Identities=27% Similarity=0.407 Sum_probs=93.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+++++|+|+|++- +||+|+||+|++||++||+|||||||||++|+|+|.++||+|+|.++|+||
T Consensus 4 lL~v~~l~k~FGGl---------------~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~i 68 (250)
T COG0411 4 LLEVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68 (250)
T ss_pred eeeeccceeecCCE---------------EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCccc
Confidence 57899999999763 799999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
......+..|..|+--+|...+|++|||.||+..-..
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~ 105 (250)
T COG0411 69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAH 105 (250)
T ss_pred CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhh
Confidence 7655556678889999999999999999999988644
No 24
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.87 E-value=2.3e-22 Score=207.78 Aligned_cols=103 Identities=30% Similarity=0.456 Sum_probs=95.2
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..+++++++|.|++ ++|.+||||+|++|||.+|||.|||||||||++|.|+++|++|+|+++|+.
T Consensus 3 ~~l~~~~itK~f~~---------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~ 67 (501)
T COG3845 3 PALEMRGITKRFPG---------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE 67 (501)
T ss_pred ceEEEeccEEEcCC---------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEE
Confidence 47899999999974 379999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
+.-....+.++..||++.||..|+|.+||.||+.+...
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence 87555667788899999999999999999999999764
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=7.1e-22 Score=204.92 Aligned_cols=111 Identities=23% Similarity=0.398 Sum_probs=97.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~ 67 (353)
T TIGR03265 3 PYLSIDNIRKRFGAF---------------TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD 67 (353)
T ss_pred cEEEEEEEEEEeCCe---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEE
Confidence 368999999999642 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
+.. ....++.+|||||+..+|+++||+||+.+..+.++.++++.++
T Consensus 68 ~~~---~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~ 113 (353)
T TIGR03265 68 ITR---LPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE 113 (353)
T ss_pred CCC---CCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH
Confidence 843 2234678999999999999999999999988877776655443
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.87 E-value=8.7e-22 Score=203.06 Aligned_cols=116 Identities=22% Similarity=0.390 Sum_probs=98.8
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++.. ..+.+|+|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~~-----------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQGT-----------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCCC-----------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 78999999996421 1236999999999999999999999999999999999999999999999999985
Q ss_pred Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
... +.+..|+++||+||+..+++.+||+||+.+.....|.+++++++
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~ 119 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR 119 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH
Confidence 321 23456889999999999999999999999988777777655443
No 27
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=9.6e-22 Score=200.54 Aligned_cols=109 Identities=31% Similarity=0.494 Sum_probs=96.1
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 3 ~~i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~ 67 (303)
T TIGR01288 3 VAIDLVGVSKSYGDK---------------VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP 67 (303)
T ss_pred cEEEEEeEEEEeCCe---------------EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 468999999999642 59999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
+.. .....++.+||+||++.+++.+|++||+.+++...+.+.++
T Consensus 68 ~~~--~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 111 (303)
T TIGR01288 68 VPS--RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTRE 111 (303)
T ss_pred Ccc--cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHH
Confidence 842 23456788999999999999999999999888777765443
No 28
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.1e-22 Score=196.70 Aligned_cols=104 Identities=20% Similarity=0.395 Sum_probs=90.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
++++++++|.|+.. .|++|+|++|+.||.++|+|||||||||||++|+|++.|++|+|.++|+-+
T Consensus 2 ~i~i~~~~~~~~~~---------------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l 66 (345)
T COG1118 2 SIRINNVKKRFGAF---------------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL 66 (345)
T ss_pred ceeehhhhhhcccc---------------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEec
Confidence 47889999999653 699999999999999999999999999999999999999999999999933
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
.+.+....-.++||+++|+.+||++|||.||+.|..+.+
T Consensus 67 ~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 67 FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred cchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 222233344578999999999999999999999998776
No 29
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=9.6e-22 Score=185.87 Aligned_cols=102 Identities=29% Similarity=0.506 Sum_probs=93.1
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.+++++||+|.|+++ +.||+||||+|++||.++|+|++|||||||||+|.|+.+|++|+|.++|.+
T Consensus 2 ~~i~~~nl~k~yp~~--------------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~ 67 (258)
T COG3638 2 MMIEVKNLSKTYPGG--------------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ 67 (258)
T ss_pred ceEEEeeeeeecCCC--------------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccc
Confidence 368999999999753 269999999999999999999999999999999999999999999999998
Q ss_pred cCC--cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRS--SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~--~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.. ..+.+++|+++||++|+.+|.+++||.||+...
T Consensus 68 i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~g 105 (258)
T COG3638 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG 105 (258)
T ss_pred hhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhh
Confidence 863 345778899999999999999999999999774
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=203.66 Aligned_cols=111 Identities=24% Similarity=0.494 Sum_probs=96.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYDGK--------------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeCCC--------------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 48999999999422 1599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
.. ....++.+||+||+..+|+++||+||+.+..+.++.++++.++
T Consensus 69 ~~---~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~ 113 (356)
T PRK11650 69 NE---LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE 113 (356)
T ss_pred CC---CCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH
Confidence 43 2234578999999999999999999999988777777655443
No 31
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.8e-21 Score=188.04 Aligned_cols=107 Identities=34% Similarity=0.533 Sum_probs=93.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYGDF---------------EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEECCE---------------EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecC
Confidence 4689999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
. ...+.++.+||+||++.+++.+|++||+.+..+.++.+.++
T Consensus 66 ~--~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 107 (220)
T cd03265 66 R--EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAE 107 (220)
T ss_pred c--ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHH
Confidence 2 22456778999999999999999999999987777765443
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=3.1e-21 Score=201.29 Aligned_cols=111 Identities=24% Similarity=0.424 Sum_probs=97.2
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 12 ~~~L~l~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~ 76 (375)
T PRK09452 12 SPLVELRGISKSFDGK---------------EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ 76 (375)
T ss_pred CceEEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 3468999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIK 532 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~ 532 (536)
++.. ....++.+||+||+..||+++||+||+.+..+.++.+.++++
T Consensus 77 ~i~~---~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~ 122 (375)
T PRK09452 77 DITH---VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIT 122 (375)
T ss_pred ECCC---CCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHH
Confidence 9842 223457899999999999999999999998777777665543
No 33
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.85 E-value=4e-21 Score=186.65 Aligned_cols=111 Identities=31% Similarity=0.514 Sum_probs=95.5
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++.. +...+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVK-----------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCC-----------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcc
Confidence 67899999996531 1125999999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
. .....++.+|||||++.+++.+|++||+.++...++.+.++
T Consensus 71 ~--~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 112 (218)
T cd03266 71 K--EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDE 112 (218)
T ss_pred c--CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHH
Confidence 2 34456788999999999999999999999887777765444
No 34
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.4e-21 Score=201.32 Aligned_cols=113 Identities=28% Similarity=0.469 Sum_probs=98.6
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 17 ~~~l~l~~v~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~ 81 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV 81 (377)
T ss_pred CceEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 3469999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
++.. ....++.+||+||+..||+++||+||+.+..+.++.+.+++++.
T Consensus 82 ~i~~---~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~ 129 (377)
T PRK11607 82 DLSH---VPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR 129 (377)
T ss_pred ECCC---CCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 9842 23456789999999999999999999999877777776555443
No 35
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.85 E-value=4e-21 Score=186.40 Aligned_cols=110 Identities=24% Similarity=0.374 Sum_probs=93.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++.. +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPGGH-------------QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecCCC-------------eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence 68999999996421 15999999999999999999999999999999999999999999999999874
Q ss_pred Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
... +....++.+||+||++.+++.+|++||+.+....++.+.+
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPR 113 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHH
Confidence 211 1234677899999999999999999999987766665433
No 36
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.85 E-value=3.8e-21 Score=199.90 Aligned_cols=110 Identities=20% Similarity=0.346 Sum_probs=96.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc--cEEEEcCE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG--GDALIYGF 483 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~--G~i~i~g~ 483 (536)
.++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYGAN---------------TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEECCe---------------EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCE
Confidence 58999999999642 59999999999999999999999999999999999999999 99999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
++.. ....++.+||++|+..+|+++||+||+.+..+.++.+++++++
T Consensus 70 ~~~~---~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~ 116 (362)
T TIGR03258 70 DLTH---APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE 116 (362)
T ss_pred ECCC---CCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH
Confidence 9842 2234678999999999999999999999988877777655444
No 37
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.2e-21 Score=188.09 Aligned_cols=109 Identities=25% Similarity=0.501 Sum_probs=91.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFGGR---------------TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 3688999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred Cccc--HHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374 487 SSVS--MTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK-GLPLDS 530 (536)
Q Consensus 487 ~~~~--~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk-g~~~~~ 530 (536)
.... ....++.+||+||++.+++.+|++||+.+..... +.+.++
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 112 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEE 112 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHH
Confidence 3211 2456788999999999999999999998875543 344433
No 38
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.85 E-value=3.3e-21 Score=196.54 Aligned_cols=94 Identities=36% Similarity=0.668 Sum_probs=85.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.+||+||++.+++.+|++
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR--EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 69999999999999999999999999999999999999999999999999842 3345678899999999999999999
Q ss_pred HHHHHHHHhcCCChHh
Q 009374 515 EHLHLFANIKGLPLDS 530 (536)
Q Consensus 515 e~L~~~~~lkg~~~~~ 530 (536)
||+.++++++|.+.++
T Consensus 85 e~l~~~~~~~~~~~~~ 100 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDE 100 (302)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 9999998888876544
No 39
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.85 E-value=5.7e-21 Score=185.83 Aligned_cols=108 Identities=46% Similarity=0.747 Sum_probs=93.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++.+ .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~-------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKKGT-------------KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCCCC-------------ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 46889999996420 25999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
. .....++.+||+||++.+++.+|++||+.+.....+.+.+
T Consensus 68 ~--~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 108 (220)
T cd03263 68 T--DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS 108 (220)
T ss_pred c--chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence 2 2345677899999999999999999999998877776543
No 40
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=5.1e-21 Score=187.71 Aligned_cols=107 Identities=28% Similarity=0.458 Sum_probs=90.8
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYGKR---------------KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeCCE---------------EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 4688999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
.....+..++.+||+||++.+++.+|++||+.+....++.+.
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 107 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSK 107 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCH
Confidence 321112235679999999999999999999998766665543
No 41
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.84 E-value=2.4e-21 Score=189.24 Aligned_cols=100 Identities=28% Similarity=0.415 Sum_probs=91.0
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+..|+++ .+++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++
T Consensus 2 ~L~~~~ls~~y~~~---------------~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYGGK---------------PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEECCe---------------eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 57899999999753 699999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.+ ...++..+.+||+||.....+.+||+|-+.+..
T Consensus 67 ~~-~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 67 AS-LSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred hh-cCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 64 345677788999999999999999999998853
No 42
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.84 E-value=6.7e-21 Score=197.66 Aligned_cols=100 Identities=22% Similarity=0.432 Sum_probs=89.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++
T Consensus 2 ~L~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFGRT---------------QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeCCe---------------EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 47899999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
.. ....++.+|||||+..+|+++|++||+.+..+.
T Consensus 67 ~~---~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~ 101 (353)
T PRK10851 67 SR---LHARDRKVGFVFQHYALFRHMTVFDNIAFGLTV 101 (353)
T ss_pred CC---CCHHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence 43 223457899999999999999999999987664
No 43
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=5.7e-21 Score=177.74 Aligned_cols=117 Identities=22% Similarity=0.433 Sum_probs=105.1
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc-----cEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-----GDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~-----G~i 478 (536)
...++++||++.|++. +||+|+|++|+++++++|+||+||||||+||++..+....+ |+|
T Consensus 5 ~~~~~~~~l~~yYg~~---------------~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v 69 (253)
T COG1117 5 IPAIEVRDLNLYYGDK---------------HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV 69 (253)
T ss_pred cceeEecceeEEECch---------------hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE
Confidence 3578999999999753 69999999999999999999999999999999999987765 999
Q ss_pred EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhhC
Q 009374 479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA 536 (536)
Q Consensus 479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v~ 536 (536)
.++|++|.+ ..+..++|+++|+++|.+.-|| +|++||+.+..+++|+..+++++.||
T Consensus 70 ~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe 127 (253)
T COG1117 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVE 127 (253)
T ss_pred EECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHH
Confidence 999999964 2457789999999999999999 99999999999999998777777764
No 44
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.3e-21 Score=198.35 Aligned_cols=108 Identities=22% Similarity=0.422 Sum_probs=94.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYGDV---------------VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 48899999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
.. ....++.+||+||+..+++++||+||+.+..+.++.+.++.
T Consensus 68 ~~---~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~ 110 (369)
T PRK11000 68 ND---VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEI 110 (369)
T ss_pred CC---CCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHH
Confidence 42 12235679999999999999999999999877777665443
No 45
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.84 E-value=8.2e-21 Score=184.44 Aligned_cols=111 Identities=27% Similarity=0.463 Sum_probs=91.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++.+ ....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG-----------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC-----------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehh
Confidence 36889999996421 0125999999999999999999999999999999999999999999999999874
Q ss_pred Cccc--HHH-hhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 487 SSVS--MTN-IQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 487 ~~~~--~~~-~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
.... ... .++.+||+||++.+++.+|++||+.+....++.+.
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 114 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPK 114 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCH
Confidence 2111 112 35679999999999999999999999776666543
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1e-20 Score=195.88 Aligned_cols=114 Identities=24% Similarity=0.442 Sum_probs=96.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++.. ..+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~~-----------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQGG-----------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCCC-----------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 78999999997311 0126999999999999999999999999999999999999999999999999985
Q ss_pred Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
... +....|+.+||+||+..+++++|++||+.+.....|.+.++.
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~ 117 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEI 117 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 321 223457889999999999999999999999877777765443
No 47
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.84 E-value=9e-21 Score=182.86 Aligned_cols=107 Identities=26% Similarity=0.460 Sum_probs=92.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYGKK---------------RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEECCe---------------EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCccc
Confidence 4688999999542 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
. ..+.++.+|||||++.+++.+|++||+.++....+...+++
T Consensus 66 ~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 107 (208)
T cd03268 66 K---NIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRI 107 (208)
T ss_pred c---hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHH
Confidence 2 14557789999999999999999999999876655443333
No 48
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8.2e-21 Score=183.41 Aligned_cols=103 Identities=31% Similarity=0.516 Sum_probs=90.8
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFGRV---------------TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEECCE---------------EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh
Confidence 3688999999642 5999999999999999999999999999999999999999999999998873
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
. ..++.+||+||+..+++.+|++||+.+....++.+..
T Consensus 66 ~-----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (210)
T cd03269 66 I-----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE 103 (210)
T ss_pred H-----HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChH
Confidence 1 3567899999999999999999999988777666543
No 49
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=186.30 Aligned_cols=107 Identities=28% Similarity=0.478 Sum_probs=92.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++++.|++. ..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~--------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (242)
T cd03295 1 IEFENVTKRYGGG--------------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIR 66 (242)
T ss_pred CEEEEEEEEeCCc--------------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcC
Confidence 3678999999641 15999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
. .+.+..++.+||+||++.+++.+|++||+.+..++.+.+.
T Consensus 67 ~-~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (242)
T cd03295 67 E-QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK 107 (242)
T ss_pred c-CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence 2 2334567789999999999999999999998877666543
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8.5e-21 Score=183.72 Aligned_cols=104 Identities=27% Similarity=0.517 Sum_probs=89.8
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTYGSV---------------RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEeCCe---------------eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcC
Confidence 3678999999642 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
. ....++.+||+||++.+++++|++||+.+.....+.+.
T Consensus 66 ~---~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03259 66 G---VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK 104 (213)
T ss_pred c---CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence 2 12345689999999999999999999988765555443
No 51
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.84 E-value=1.6e-20 Score=181.95 Aligned_cols=108 Identities=26% Similarity=0.376 Sum_probs=92.4
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYPGG--------------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeCCC--------------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 6899999999522 15999999999999999999999999999999999999999999999999885
Q ss_pred Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
... +....++.+||+||++.+++.+|++||+.+....++...
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 111 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE 111 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCH
Confidence 321 123467789999999999999999999998766666543
No 52
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.5e-20 Score=183.00 Aligned_cols=114 Identities=19% Similarity=0.340 Sum_probs=93.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.++++|+++.|++.. ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 72 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS-----------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP 72 (233)
T ss_pred ceEEEEeEEEEcCCCC-----------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 3689999999996421 01259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccH--HHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 485 IRSSVSM--TNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 485 i~~~~~~--~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
+...... ... ++.+||+||+..+++.+|++||+.+...+.+.+.+
T Consensus 73 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 120 (233)
T PRK11629 73 MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA 120 (233)
T ss_pred cCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 8532111 123 36799999999999999999999987655555433
No 53
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=1.9e-20 Score=180.17 Aligned_cols=102 Identities=24% Similarity=0.356 Sum_probs=90.9
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERDER---------------ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEECCE---------------EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence 6889999999642 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
. .....++.+||++|++.+++.+|++||+.+....++
T Consensus 67 ~--~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 103 (204)
T PRK13538 67 R--QRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG 103 (204)
T ss_pred c--chHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC
Confidence 2 224567789999999999999999999999876654
No 54
>PRK10908 cell division protein FtsE; Provisional
Probab=99.83 E-value=2.1e-20 Score=182.14 Aligned_cols=110 Identities=21% Similarity=0.311 Sum_probs=93.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYLGG--------------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEecCC--------------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 6889999999422 15999999999999999999999999999999999999999999999999884
Q ss_pred Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
... +....++.+||+||++.+++.+|++||+.+....++.+.++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 113 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDD 113 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHH
Confidence 311 22345778999999999999999999999877666665443
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.83 E-value=1.3e-20 Score=182.42 Aligned_cols=106 Identities=25% Similarity=0.435 Sum_probs=91.0
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFGNV---------------TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEECCe---------------eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3688999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
.. ...++.+||+||++.+++.+|++||+.+....++...++
T Consensus 66 ~~---~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03301 66 DL---PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE 106 (213)
T ss_pred cC---CcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence 21 122467999999999999999999999877666655443
No 56
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.83 E-value=2.1e-20 Score=180.99 Aligned_cols=109 Identities=23% Similarity=0.373 Sum_probs=92.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~--------------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYPNG--------------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeCCC--------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence 3678999999642 15999999999999999999999999999999999999999999999999884
Q ss_pred Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
... +....++.++|+||++.+++.+|++||+.+....++.+.+
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~ 111 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR 111 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHH
Confidence 321 1234677899999999999999999999988766665443
No 57
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.83 E-value=1.8e-20 Score=182.53 Aligned_cols=104 Identities=25% Similarity=0.400 Sum_probs=89.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++++||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYGKS---------------QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecCCe---------------eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence 4688999999642 5999999999999999999999999999999999999999999999999875
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.....+..++.+||+||++.+++.+|++||+.+.....+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 322222235679999999999999999999998765543
No 58
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.5e-20 Score=181.76 Aligned_cols=106 Identities=30% Similarity=0.524 Sum_probs=92.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++++.|++. .+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~---------------~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYGKK---------------RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEECCE---------------EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccc
Confidence 4688999999542 5999999999999 99999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
.. . ...++.+||+||++.+++.+|++|++.+....++.+.++
T Consensus 65 ~~-~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 65 KQ-P-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cc-h-HHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 32 2 456788999999999999999999999887776665433
No 59
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.2e-20 Score=183.37 Aligned_cols=111 Identities=26% Similarity=0.459 Sum_probs=92.8
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|+++. +...+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDTG-----------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCCC-----------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 68899999996421 0125999999999999999999999999999999999999999999999999884
Q ss_pred Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
... +....++.+||+||++.+++.+|++||+.+....++.+.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 114 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK 114 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCH
Confidence 321 122346789999999999999999999988766666543
No 60
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2e-20 Score=182.13 Aligned_cols=106 Identities=23% Similarity=0.425 Sum_probs=90.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++.. ..+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGGG-----------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCCC-----------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 36889999996521 0126999999999999999999999999999999999999999999999999873
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
..++.+||+||++.+++.+|++||+.+....++.+.+
T Consensus 70 ------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (220)
T cd03293 70 ------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106 (220)
T ss_pred ------cccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHH
Confidence 1356799999999999999999999987766665543
No 61
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=184.21 Aligned_cols=104 Identities=28% Similarity=0.454 Sum_probs=90.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYKGR---------------RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeCCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 58899999999642 599999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
......+..++.+||+||++.+++.+|++||+.+..++.
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 106 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR 106 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc
Confidence 532222335678999999999999999999998876544
No 62
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.83 E-value=2.7e-20 Score=183.16 Aligned_cols=106 Identities=27% Similarity=0.398 Sum_probs=91.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++++||++.+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYGAR---------------RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence 6789999999642 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
.. . ...++.+||+||++.+++.+|++||+.+.+..++.+.+
T Consensus 67 ~~-~-~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~ 107 (236)
T TIGR03864 67 RA-P-RAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA 107 (236)
T ss_pred cC-C-hhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence 31 1 23346799999999998999999999988776665443
No 63
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.83 E-value=1.8e-20 Score=180.46 Aligned_cols=106 Identities=21% Similarity=0.290 Sum_probs=89.1
Q ss_pred EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (536)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~ 488 (536)
++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 65 (206)
T TIGR03608 1 LKNISKKFGDK---------------IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPL 65 (206)
T ss_pred CcceEEEECCE---------------EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcccc
Confidence 46888999642 599999999999999999999999999999999999999999999999986321
Q ss_pred cc---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 489 VS---MTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 489 ~~---~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
.. ....++.+||++|++.+++.+|++||+.+.....+.+.+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~ 109 (206)
T TIGR03608 66 NSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKK 109 (206)
T ss_pred chhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHH
Confidence 11 223567899999999999999999999987665555433
No 64
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.83 E-value=2.6e-20 Score=183.14 Aligned_cols=103 Identities=29% Similarity=0.424 Sum_probs=88.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRFGGL---------------VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEECCE---------------EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECC
Confidence 3578999999642 5999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
.....+..++.+||+||++.+++.+|++||+.+.....
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~ 103 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR 103 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhc
Confidence 32211223567999999999999999999998876544
No 65
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=3.6e-20 Score=181.48 Aligned_cols=105 Identities=26% Similarity=0.396 Sum_probs=89.9
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYGQS---------------HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeCCe---------------EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 4688999999642 5999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.....+..++.+||+||++.+++.+|++||+.+.....+.
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 105 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR 105 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc
Confidence 3222223467899999999999999999999887655443
No 66
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.83 E-value=3.2e-20 Score=177.72 Aligned_cols=102 Identities=25% Similarity=0.350 Sum_probs=89.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSRGER---------------MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEECCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence 4678999999642 5999999999999999999999999999999999999999999999999875
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.. ....++.+||+||++.+++.+|++|++.++...++
T Consensus 66 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 66 EQ--RDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred cc--hHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 32 23456789999999999999999999998876654
No 67
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.6e-20 Score=186.71 Aligned_cols=113 Identities=15% Similarity=0.300 Sum_probs=95.2
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||++.|++.. +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|++
T Consensus 4 ~~l~~~~l~~~~~~~~-------------~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~ 70 (279)
T PRK13635 4 EIIRVEHISFRYPDAA-------------TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV 70 (279)
T ss_pred ceEEEEEEEEEeCCCC-------------ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3689999999996421 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
+.. ....+.++.+||+||+. .++..+|++||+.+.....+.+.++.
T Consensus 71 i~~-~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 117 (279)
T PRK13635 71 LSE-ETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM 117 (279)
T ss_pred CCc-CcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHH
Confidence 853 23345677899999997 46778899999998776666665443
No 68
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.1e-20 Score=196.99 Aligned_cols=106 Identities=29% Similarity=0.430 Sum_probs=94.2
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.++++|++|+|++- +||+|+||++++|||++|+|.||||||||+|+|+|.++|++|+|.++|+
T Consensus 6 ~~ll~~~~i~K~FggV---------------~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~ 70 (500)
T COG1129 6 PPLLELRGISKSFGGV---------------KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGK 70 (500)
T ss_pred cceeeeecceEEcCCc---------------eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCE
Confidence 3468999999999763 6999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
.+......+.....|+.++|+..|.|+|||.||+.+....+
T Consensus 71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~ 111 (500)
T COG1129 71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPT 111 (500)
T ss_pred EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccc
Confidence 98643444555678999999999999999999998865543
No 69
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.83 E-value=3.7e-20 Score=179.18 Aligned_cols=107 Identities=24% Similarity=0.509 Sum_probs=91.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFGDF---------------HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEECCe---------------EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 3678999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred C-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH-hcCCCh
Q 009374 487 S-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN-IKGLPL 528 (536)
Q Consensus 487 ~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~-lkg~~~ 528 (536)
. ..+....++.+||+||++.+++.+|++||+.+... .++.+.
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 109 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSK 109 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCH
Confidence 2 12334567889999999999999999999988643 445443
No 70
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=6.4e-18 Score=201.96 Aligned_cols=114 Identities=21% Similarity=0.257 Sum_probs=90.4
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--cCccEEEEcC
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYG 482 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--pt~G~i~i~g 482 (536)
..+.++||+...+.+.... ....+.+.+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 866 ~~~~~~~v~y~v~~~~~~~--~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG 943 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMK--EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943 (1470)
T ss_pred ceEEEEEEEEEEccCcccc--ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence 3589999998875321100 00011123469999999999999999999999999999999999976 3789999999
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
++.. ....++.+|||+|+|.+++.+||+|+|.+.+.++
T Consensus 944 ~~~~----~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr 981 (1470)
T PLN03140 944 FPKK----QETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981 (1470)
T ss_pred ccCC----hHHhhhheEEEccccccCCCCcHHHHHHHHHHhC
Confidence 8763 1345678999999999999999999999987765
No 71
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.83 E-value=3.2e-20 Score=192.53 Aligned_cols=98 Identities=27% Similarity=0.375 Sum_probs=86.7
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHh----hcceEEEcCCCCCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI----QKSIGVCPQFNILWDA 510 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~----~~~ig~~pQ~~~l~~~ 510 (536)
.+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.. .+..+. |+.+|||||++.++++
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~-~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-QSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 69999999999999999999999999999999999999999999999999853 223333 6789999999999999
Q ss_pred CCHHHHHHHHHHhcCCChHhHhh
Q 009374 511 LSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 511 lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
+||+||+.+...+.|.++++.++
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~ 108 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE 108 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999988888877655443
No 72
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.3e-20 Score=182.83 Aligned_cols=102 Identities=23% Similarity=0.391 Sum_probs=89.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFGDF---------------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEECCE---------------EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 47899999999642 599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
... ...++.+||+||++.+++.+|++||+.+.....+
T Consensus 67 ~~~---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 103 (239)
T cd03296 67 TDV---PVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP 103 (239)
T ss_pred CcC---CccccceEEEecCCcccCCCCHHHHHhhhhhhcc
Confidence 421 1235679999999999999999999988765443
No 73
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=4.7e-20 Score=185.19 Aligned_cols=113 Identities=24% Similarity=0.391 Sum_probs=94.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++|.|++.. +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 5 ~~~l~~~nl~~~~~~~~-------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 71 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE-------------NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI 71 (271)
T ss_pred ceEEEEEeEEEEcCCCC-------------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 45799999999996321 15999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
++.. .+...+++.+|||||++. .++.+|++||+.+.....+.+.++
T Consensus 72 ~i~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~ 118 (271)
T PRK13632 72 TISK-ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKK 118 (271)
T ss_pred ecCc-CCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHH
Confidence 9842 234466788999999974 677899999998876555555443
No 74
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5.3e-20 Score=193.11 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=98.6
Q ss_pred eEEEeeeEEEcCCCCcCc------ccc---ccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 406 AVQIRGLVKTFPGTRKIG------CCC---KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~------~~~---~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
.|+++||+|.|+...... ... ..+..+.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 589999999998742100 000 01222334589999999999999999999999999999999999999999
Q ss_pred EEEEcCEecCCccc--HHH-hhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 477 DALIYGFSIRSSVS--MTN-IQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 477 ~i~i~g~~i~~~~~--~~~-~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
+|+++|.++..... ..+ .++.+||+||+..+++++|++||+.+...++|.+.++.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~ 141 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEER 141 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 99999999853211 112 24579999999999999999999999887777765443
No 75
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.82 E-value=3.5e-20 Score=179.12 Aligned_cols=105 Identities=25% Similarity=0.439 Sum_probs=88.2
Q ss_pred EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (536)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~ 488 (536)
++|++|.|++.. +.+++++||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 2 ~~~l~~~~~~~~-------------~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~- 67 (211)
T cd03225 2 LKNLSFSYPDGA-------------RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK- 67 (211)
T ss_pred ceeEEEecCCCC-------------eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc-
Confidence 678999996421 159999999999999999999999999999999999999999999999998852
Q ss_pred ccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCC
Q 009374 489 VSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 489 ~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~ 527 (536)
.+....++.+||+||++. .++++|++||+.+.....+..
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~ 107 (211)
T cd03225 68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP 107 (211)
T ss_pred CCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence 234556788999999974 366799999998876655544
No 76
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.82 E-value=3e-20 Score=181.64 Aligned_cols=104 Identities=22% Similarity=0.386 Sum_probs=89.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc-----ccCccEEEEc
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----PVTGGDALIY 481 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~-----~pt~G~i~i~ 481 (536)
++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYGDK---------------HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEEC
Confidence 4688999999642 5999999999999999999999999999999999999 9999999999
Q ss_pred CEecCCcc-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 482 GFSIRSSV-SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 482 g~~i~~~~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
|.++.... +....++.+||+||++.++ .+|++||+.+.....+.
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~ 110 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI 110 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC
Confidence 99874211 1345678899999999988 89999999887666554
No 77
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5.6e-20 Score=184.87 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=92.4
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. +.+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYPDG--------------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcCCC--------------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECC
Confidence 6789999999532 14999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 487 SSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
........++.+||+||++. .+..+|++||+.+.....+.+.++.
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEI 113 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHH
Confidence 32223456778999999975 3667899999988766666655443
No 78
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=6.2e-20 Score=176.99 Aligned_cols=107 Identities=25% Similarity=0.325 Sum_probs=92.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (207)
T PRK13539 2 MLEGEDLACVRGGR---------------VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66 (207)
T ss_pred EEEEEeEEEEECCe---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC
Confidence 47899999999642 599999999999999999999999999999999999999999999999886
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
.. . ..++.+||++|++.+++.+|++||+.+.....+...+++
T Consensus 67 ~~---~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 108 (207)
T PRK13539 67 DD---P-DVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI 108 (207)
T ss_pred cc---h-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence 31 1 267789999999999999999999988776655443333
No 79
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.82 E-value=6.7e-20 Score=181.60 Aligned_cols=104 Identities=23% Similarity=0.420 Sum_probs=90.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-----ccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-----~G~i~i 480 (536)
+++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.+
T Consensus 1 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 1 AIEIENLNLFYGEK---------------EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred CEEEEEEEEEECCe---------------eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 37899999999642 5999999999999999999999999999999999999998 999999
Q ss_pred cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
+|.++... .+....++.+||+||+..+++ +|++||+.+....++
T Consensus 66 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~ 110 (247)
T TIGR00972 66 DGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG 110 (247)
T ss_pred CCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC
Confidence 99988421 123456788999999999998 999999998766665
No 80
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=7.5e-20 Score=185.18 Aligned_cols=117 Identities=23% Similarity=0.392 Sum_probs=94.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+++++|+|.|++... ..+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGTP----------FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCCc----------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 4789999999964210 012599999999999999999999999999999999999999999999999998
Q ss_pred CCcc-cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 486 RSSV-SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 486 ~~~~-~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
.... .....++.+||+||++ .++ .+||+||+.+.....|.+.++.++
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~ 121 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIEN 121 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHH
Confidence 5321 2245678899999986 344 579999999877666777655443
No 81
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=7e-20 Score=180.65 Aligned_cols=107 Identities=22% Similarity=0.474 Sum_probs=90.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFGPT---------------QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEECCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 6789999999642 5999999999999999999999999999999999999999999999999884
Q ss_pred Cc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH-hcCCCh
Q 009374 487 SS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN-IKGLPL 528 (536)
Q Consensus 487 ~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~-lkg~~~ 528 (536)
.. .+....++.+||+||++.+++.+|++|++.+... ..+...
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 110 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASK 110 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCH
Confidence 21 1234567789999999999999999999987542 334443
No 82
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.2e-20 Score=175.84 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=91.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc---cCccEEEEcC
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG 482 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i~i~g 482 (536)
.+.++|++|.|+..+ +.+.+++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g 71 (202)
T cd03233 3 TLSWRNISFTTGKGR-----------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71 (202)
T ss_pred eEEEEccEEEeccCC-----------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC
Confidence 478999999997641 23369999999999999999999999999999999999999 8999999999
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
.++.. .....++.+||+||++.+++.+|++||+.+..+.
T Consensus 72 ~~~~~--~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 110 (202)
T cd03233 72 IPYKE--FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC 110 (202)
T ss_pred EECcc--chhhhcceEEEEecccccCCCCcHHHHHhhhhhh
Confidence 98842 1234677899999999999999999999987643
No 83
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.82 E-value=4.9e-20 Score=181.33 Aligned_cols=121 Identities=30% Similarity=0.403 Sum_probs=92.9
Q ss_pred EEeeeEEEcCCCCcCcc------ccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374 408 QIRGLVKTFPGTRKIGC------CCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (536)
Q Consensus 408 ~~~~l~k~y~~~~~~~~------~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~ 481 (536)
+++|++|.|....+.+. ....++.+.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 81 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA 81 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 56777777765321000 000122234579999999999999999999999999999999999999999999999
Q ss_pred CEecCCcccHHHhhcceEEEc-CCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 482 GFSIRSSVSMTNIQKSIGVCP-QFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 482 g~~i~~~~~~~~~~~~ig~~p-Q~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
|.++.. .....++.+||+| |.+.+++.+|++|++.+...+++...++
T Consensus 82 g~~~~~--~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 129 (236)
T cd03267 82 GLVPWK--RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPAR 129 (236)
T ss_pred CEEccc--cchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHH
Confidence 988632 2235567899998 5678889999999999887777765443
No 84
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=6.3e-20 Score=182.59 Aligned_cols=102 Identities=23% Similarity=0.355 Sum_probs=89.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYGGK---------------PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeCCe---------------eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 6899999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
. .++.+||+||++.+++.+|++||+.+....++.+.+
T Consensus 67 ~------~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (255)
T PRK11248 67 G------PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM 103 (255)
T ss_pred C------CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH
Confidence 2 124589999999999999999999887666666543
No 85
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.82 E-value=8.4e-20 Score=180.24 Aligned_cols=102 Identities=28% Similarity=0.385 Sum_probs=88.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 66 (242)
T TIGR03411 2 ILYLEGLSVSFDGF---------------KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL 66 (242)
T ss_pred eEEEEeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence 47899999999642 599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
......+..++.+||+||++.+++.+|++||+.+...
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 103 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP 103 (242)
T ss_pred CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence 4322122235679999999999999999999988643
No 86
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=7.4e-20 Score=184.48 Aligned_cols=114 Identities=18% Similarity=0.359 Sum_probs=95.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ------------EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCCC------------cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 589999999996421 12599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374 486 RSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKGLPLDSIK 532 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg~~~~~~~ 532 (536)
.. ....+.++.+||+||++ .++..+|++||+.+.....|.+.++.+
T Consensus 72 ~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~ 118 (279)
T PRK13650 72 TE-ENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK 118 (279)
T ss_pred Cc-CcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHH
Confidence 53 23455678899999997 467788999999987666677655443
No 87
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.82 E-value=8.7e-20 Score=177.63 Aligned_cols=110 Identities=24% Similarity=0.389 Sum_probs=90.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++.. +...+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEGK-----------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCCC-----------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence 67899999996421 1125999999999999999999999999999999999999999999999999874
Q ss_pred Cccc--HHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 487 SSVS--MTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 487 ~~~~--~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
.... ....+ +.+||+||++.+++.+|++||+.+....++.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 114 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS 114 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCC
Confidence 3111 12233 67999999999999999999998865555444
No 88
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1e-19 Score=180.96 Aligned_cols=105 Identities=23% Similarity=0.468 Sum_probs=90.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i 480 (536)
.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (253)
T PRK14267 4 AIETVNLRVYYGSN---------------HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68 (253)
T ss_pred eEEEEeEEEEeCCe---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 68999999999642 599999999999999999999999999999999999987 4999999
Q ss_pred cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
+|.++.. ..+....++.+||+||++.+++.+|++||+.+....++
T Consensus 69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 114 (253)
T PRK14267 69 FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG 114 (253)
T ss_pred CCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC
Confidence 9998841 11233567789999999999999999999988765544
No 89
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.82 E-value=1.2e-19 Score=177.43 Aligned_cols=113 Identities=20% Similarity=0.331 Sum_probs=92.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++.. ....+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~-----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 73 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-----------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP 73 (228)
T ss_pred ceEEEeeeEEEccCCC-----------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEE
Confidence 4689999999996521 01249999999999999999999999999999999999999999999999998
Q ss_pred cCCccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 485 IRSSVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 485 i~~~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
+..... .... ++.+||+||++.+++.+|++||+.+....++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~ 120 (228)
T PRK10584 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS 120 (228)
T ss_pred cccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCH
Confidence 743211 1122 3579999999999999999999988655555443
No 90
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=8.6e-20 Score=175.02 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=88.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|+++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYHDQ---------------PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeCCe---------------eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccc
Confidence 6899999999642 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
. .....++.+||+||+..+++.+|++||+.+..
T Consensus 67 ~--~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~ 99 (200)
T PRK13540 67 K--DLCTYQKQLCFVGHRSGINPYLTLRENCLYDI 99 (200)
T ss_pred c--CHHHHHhheEEeccccccCcCCCHHHHHHHHH
Confidence 2 33456788999999999999999999998764
No 91
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=5.3e-20 Score=177.14 Aligned_cols=100 Identities=26% Similarity=0.280 Sum_probs=84.4
Q ss_pred EEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (536)
Q Consensus 408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~ 487 (536)
+++|++|.|++. +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 66 (205)
T cd03226 1 RIENISFSYKKG--------------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA 66 (205)
T ss_pred CcccEEEEeCCc--------------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh
Confidence 367899999641 159999999999999999999999999999999999999999999999998732
Q ss_pred cccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcC
Q 009374 488 SVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 488 ~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg 525 (536)
...++.+||+||++. .+..+|++||+.++....+
T Consensus 67 ----~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~ 101 (205)
T cd03226 67 ----KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD 101 (205)
T ss_pred ----HHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC
Confidence 345678999999974 2346799999988765444
No 92
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=6.8e-20 Score=175.87 Aligned_cols=98 Identities=24% Similarity=0.343 Sum_probs=87.4
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|+++ .+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCERDGR---------------ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEeCCc---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 3689999999643 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
. .....++.+||+||++.+++.+|++||+.++.
T Consensus 66 ~--~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 98 (201)
T cd03231 66 F--QRDSIARGLLYLGHAPGIKTTLSVLENLRFWH 98 (201)
T ss_pred c--ccHHhhhheEEeccccccCCCcCHHHHHHhhc
Confidence 2 22456788999999999999999999998864
No 93
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=8.1e-20 Score=180.16 Aligned_cols=100 Identities=31% Similarity=0.498 Sum_probs=86.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 66 (241)
T cd03256 1 IEVENLSKTYPNG--------------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN 66 (241)
T ss_pred CEEeeEEEecCCc--------------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecc
Confidence 3678999999641 15999999999999999999999999999999999999999999999999874
Q ss_pred Cccc--HHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVS--MTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~--~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.... ....++.+||+||++.+++.+|++||+.+.
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 3211 345677899999999999999999999764
No 94
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.81 E-value=8.1e-20 Score=191.84 Aligned_cols=100 Identities=24% Similarity=0.383 Sum_probs=90.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++
T Consensus 3 ~L~~~nls~~y~~~---------------~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFGDT---------------TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 58999999999643 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.. .+.++.++++||+||+..++.++|++|++.+..
T Consensus 68 ~~-~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~ 102 (402)
T PRK09536 68 EA-LSARAASRRVASVPQDTSLSFEFDVRQVVEMGR 102 (402)
T ss_pred Cc-CCHHHHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence 53 244566788999999999999999999998743
No 95
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.1e-19 Score=183.80 Aligned_cols=117 Identities=19% Similarity=0.318 Sum_probs=94.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++... ..+.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP----------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCCc----------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 4789999999964210 012599999999999999999999999999999999999999999999999998
Q ss_pred CCc---ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 486 RSS---VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 486 ~~~---~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
... .+...+|+.+|||||++ .+++ .|++||+.+.....|.+.++.++
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~ 123 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKN 123 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHH
Confidence 421 13456788999999985 5665 59999999876666776554443
No 96
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.1e-19 Score=184.35 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=93.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++... ....+|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTP----------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCc----------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 789999999964310 0125999999999999999999999999999999999999999999999999884
Q ss_pred C---cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 487 S---SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 487 ~---~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
. .....+.++.+|||||++ .++ ..|++||+.+.....|.+.++.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~ 121 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDA 121 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHH
Confidence 2 123445678899999985 466 4799999998766667665544
No 97
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.81 E-value=1.2e-19 Score=180.85 Aligned_cols=104 Identities=23% Similarity=0.362 Sum_probs=89.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~ 66 (258)
T PRK13548 2 MLEARNLSVRLGGR---------------TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66 (258)
T ss_pred eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 47899999999642 599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.. ......++.+||+||++.+++.+|++|++.+.....+
T Consensus 67 ~~-~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 105 (258)
T PRK13548 67 AD-WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG 105 (258)
T ss_pred cc-CCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC
Confidence 42 2234456789999999999889999999988654333
No 98
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.4e-19 Score=178.77 Aligned_cols=109 Identities=22% Similarity=0.382 Sum_probs=91.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYGAH---------------QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEECCe---------------eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 47899999999642 599999999999999999999999999999999999999999999999987
Q ss_pred CC-----cccHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HHHhcCCChH
Q 009374 486 RS-----SVSMTNIQKSIGVCPQFNILWDALSGEEHLHL-FANIKGLPLD 529 (536)
Q Consensus 486 ~~-----~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~-~~~lkg~~~~ 529 (536)
.. ..+....++.+||+||++.+++.+|++||+.+ .....+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~ 116 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKD 116 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHH
Confidence 21 11234567789999999999999999999975 3445555443
No 99
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=179.42 Aligned_cols=104 Identities=20% Similarity=0.367 Sum_probs=90.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i 480 (536)
.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14247 3 KIEIRDLKVSFGQV---------------EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67 (250)
T ss_pred eEEEEeeEEEECCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence 58899999999642 599999999999999999999999999999999999874 7999999
Q ss_pred cCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 481 YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 481 ~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
+|.++.. .+....++.+||+||++.+++.+|++||+.+..+.++
T Consensus 68 ~g~~i~~-~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 111 (250)
T PRK14247 68 DGQDIFK-MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR 111 (250)
T ss_pred CCEECCc-CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc
Confidence 9998853 2344667889999999999999999999998765444
No 100
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=2e-19 Score=174.35 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=91.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 73 (214)
T PRK13543 9 PPLLAAHALAFSRNEE---------------PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK 73 (214)
T ss_pred cceEEEeeEEEecCCc---------------eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCE
Confidence 3569999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
++.. ...++.+||++|++.+++.+|++||+.+....++.
T Consensus 74 ~i~~----~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 112 (214)
T PRK13543 74 TATR----GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGR 112 (214)
T ss_pred Eccc----hhhhhceEEeecCcccccCCcHHHHHHHHHHhcCC
Confidence 8842 13356799999999999999999999988766554
No 101
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.81 E-value=1.7e-19 Score=179.73 Aligned_cols=108 Identities=18% Similarity=0.354 Sum_probs=91.4
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 68 (257)
T PRK10619 4 NKLNVIDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT 68 (257)
T ss_pred ccEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 358999999999642 59999999999999999999999999999999999999999999999998
Q ss_pred cCCc------------ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCC
Q 009374 485 IRSS------------VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLP 527 (536)
Q Consensus 485 i~~~------------~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~ 527 (536)
+... .+....++.+||+||++.+++.+|++||+.+.. .+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~ 124 (257)
T PRK10619 69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS 124 (257)
T ss_pred cccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCC
Confidence 7310 123456788999999999999999999998643 334444
No 102
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.6e-19 Score=181.51 Aligned_cols=110 Identities=24% Similarity=0.275 Sum_probs=91.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. ..+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 4 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKDG--------------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCCC--------------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 58999999999632 1599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
.. ......++.+||+||++. .+..+|++||+.+.....+.+.++
T Consensus 70 ~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 114 (274)
T PRK13647 70 NA-ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDE 114 (274)
T ss_pred CC-CCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHH
Confidence 53 234456778999999862 345689999999866555665443
No 103
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.81 E-value=1.8e-19 Score=180.79 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=89.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 70 (269)
T PRK11831 6 NLVDMRGVSFTRGNR---------------CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN 70 (269)
T ss_pred ceEEEeCeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 479999999999642 59999999999999999999999999999999999999999999999998
Q ss_pred cCCcc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 485 IRSSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 485 i~~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
+.... +....++.+||+||+..+++.+|++||+.+...
T Consensus 71 i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~ 110 (269)
T PRK11831 71 IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLR 110 (269)
T ss_pred ccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHH
Confidence 74211 123356789999999999999999999987543
No 104
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.7e-19 Score=182.56 Aligned_cols=115 Identities=14% Similarity=0.286 Sum_probs=91.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++... ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 ~i~~~~l~~~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGTP----------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 4789999999974210 012599999999999999999999999999999999999999999999999987
Q ss_pred CCc---ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 486 RSS---VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 486 ~~~---~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
... .+....++.+||+||++ .++ .+|++||+.+.....+...++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~ 121 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEA 121 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHH
Confidence 421 12345677899999986 455 6899999987655555554443
No 105
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.9e-19 Score=182.33 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=94.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++... ....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.
T Consensus 2 i~~~~v~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNSP----------FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 789999999964210 0125999999999999999999999999999999999999999999999999984
Q ss_pred C---cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 487 S---SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 487 ~---~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
. .....+.++.+||++|++ .+++ .|+.|++.+.....|.+.+++++
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~ 122 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEK 122 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHH
Confidence 2 123456778899999986 6666 59999999877666776655443
No 106
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.81 E-value=1.8e-19 Score=178.78 Aligned_cols=108 Identities=22% Similarity=0.418 Sum_probs=91.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (250)
T PRK11264 3 AIEVKNLVKKFHGQ---------------TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI 67 (250)
T ss_pred cEEEeceEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 58899999999642 599999999999999999999999999999999999999999999999987
Q ss_pred CCcc-------cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH-hcCCCh
Q 009374 486 RSSV-------SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN-IKGLPL 528 (536)
Q Consensus 486 ~~~~-------~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~-lkg~~~ 528 (536)
.... +....++.+||+||+..+++.+|++||+.+... .++...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 118 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK 118 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCH
Confidence 4211 123457789999999999999999999987543 344443
No 107
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.81 E-value=2.4e-19 Score=175.19 Aligned_cols=105 Identities=16% Similarity=0.281 Sum_probs=90.8
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
++.++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 5 ~~~i~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 69 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA---------------KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69 (225)
T ss_pred CceEEEeccEEeeCCc---------------eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE
Confidence 3469999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
++.. .+....++.+||+||++.+++. |++||+.+...+++
T Consensus 70 ~~~~-~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~ 109 (225)
T PRK10247 70 DIST-LKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN 109 (225)
T ss_pred EcCc-CCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC
Confidence 8753 2334567789999999998875 99999988655544
No 108
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.81 E-value=1.4e-19 Score=188.74 Aligned_cols=125 Identities=17% Similarity=0.302 Sum_probs=96.9
Q ss_pred EEEeeeEEEcCCCCcC-------ccc--cccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374 407 VQIRGLVKTFPGTRKI-------GCC--CKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~-------~~~--~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~ 477 (536)
|+++||.|.|+..... |.- -..++.+.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 4678888888754220 000 0014455668999999999999999999999999999999999999999999
Q ss_pred EEEcCE----ecCCc--ccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 478 ALIYGF----SIRSS--VSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 478 i~i~g~----~i~~~--~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
|+++|. ++... .+..+.| +.+||+||+..+++.+|++||+.+...+.|++.++.
T Consensus 81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~ 141 (382)
T TIGR03415 81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAER 141 (382)
T ss_pred EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHH
Confidence 999996 44211 1223333 579999999999999999999999877777765443
No 109
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2e-19 Score=180.39 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=94.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.++++|++|.|++.. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.
T Consensus 5 ~~~l~i~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 71 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA-------------SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71 (269)
T ss_pred CceEEEEEEEEEcCCCC-------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 34689999999996531 15899999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
++.. .+...+++.+||+||++. +++..|+++++.+.....+.+.++
T Consensus 72 ~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 118 (269)
T PRK13648 72 AITD-DNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDE 118 (269)
T ss_pred ECCc-CCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHH
Confidence 8842 344567788999999974 778889999998876555555443
No 110
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.3e-19 Score=178.95 Aligned_cols=110 Identities=24% Similarity=0.382 Sum_probs=92.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i 478 (536)
.+.++++|+++.|+++ .+++|+||++++||++||+|+||||||||+++|+|+.+| ++|+|
T Consensus 10 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 74 (258)
T PRK14268 10 QPQIKVENLNLWYGEK---------------QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV 74 (258)
T ss_pred ceeEEEeeeEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE
Confidence 3469999999999642 599999999999999999999999999999999999875 89999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
.++|.++... .+....++.+||+||++.+++ +|++||+.+..+..+.+.+
T Consensus 75 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~ 125 (258)
T PRK14268 75 SIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKK 125 (258)
T ss_pred EECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHH
Confidence 9999987421 122345778999999999988 8999999987666665543
No 111
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-19 Score=179.03 Aligned_cols=105 Identities=21% Similarity=0.386 Sum_probs=90.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i 480 (536)
.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 4 ~l~i~~v~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~ 68 (258)
T PRK14241 4 RIDVKDLNIYYGSF---------------HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL 68 (258)
T ss_pred cEEEeeEEEEECCE---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence 58999999999642 599999999999999999999999999999999999874 7999999
Q ss_pred cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
+|.++.. .......++.+||+||+..+++.+|++||+.+....++
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 114 (258)
T PRK14241 69 DGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG 114 (258)
T ss_pred CCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC
Confidence 9998732 11234567889999999999999999999988765554
No 112
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.80 E-value=2.8e-19 Score=170.68 Aligned_cols=113 Identities=28% Similarity=0.415 Sum_probs=94.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF 483 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~ 483 (536)
.+++++++|.|++.+ +...+.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~---------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP---------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC---------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence 488999999996521 001136999999999999999999999999999999999999 999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
++.. ...++.+|||||++.+++.+|++|++.+..++..++..+.
T Consensus 74 ~~~~----~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~ 117 (194)
T cd03213 74 PLDK----RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGER 117 (194)
T ss_pred eCch----HhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHH
Confidence 8842 2567789999999999999999999998776545554443
No 113
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.80 E-value=2.4e-19 Score=175.22 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=89.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++.. +...+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGG-----------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCC-----------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 67899999996421 0125999999999999999999999999999999999999999999999999885
Q ss_pred Cccc--HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcC
Q 009374 487 SSVS--MTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 487 ~~~~--~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg 525 (536)
.... ....++.+||+||++ .+++.+|++||+.+.....+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~ 113 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG 113 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhcc
Confidence 3211 235677899999998 57788999999987655444
No 114
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.4e-19 Score=181.10 Aligned_cols=113 Identities=27% Similarity=0.346 Sum_probs=92.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++. +.+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|+++|++
T Consensus 4 ~~l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~ 69 (283)
T PRK13636 4 YILKVEELNYNYSDG--------------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP 69 (283)
T ss_pred ceEEEEeEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEE
Confidence 368999999999632 159999999999999999999999999999999999999999999999999
Q ss_pred cCC-cccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 485 IRS-SVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 485 i~~-~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
+.. ..+..+.++.+||+||++. .+...|++||+.+.....+.+.++.
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 118 (283)
T PRK13636 70 IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEV 118 (283)
T ss_pred CCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHH
Confidence 841 1223456788999999863 3345799999988665556665443
No 115
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.1e-19 Score=181.54 Aligned_cols=113 Identities=16% Similarity=0.295 Sum_probs=94.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc---cEEEEc
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIY 481 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~---G~i~i~ 481 (536)
..++++|+++.|++.. ..+++++||++++||++||+|+||||||||+++|+|+++|++ |+|+++
T Consensus 4 ~~l~i~~l~~~~~~~~-------------~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~ 70 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK-------------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVD 70 (282)
T ss_pred ceEEEEEEEEEcCCCC-------------ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEEC
Confidence 3689999999996421 159999999999999999999999999999999999999998 899999
Q ss_pred CEecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 482 GFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 482 g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
|.++.. ......++++|||||++. +++.+|++||+.+..+..+.+.++.
T Consensus 71 g~~~~~-~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 120 (282)
T PRK13640 71 GITLTA-KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM 120 (282)
T ss_pred CEECCc-CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHH
Confidence 999853 233456778999999974 6778999999987666666665443
No 116
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.6e-19 Score=178.72 Aligned_cols=111 Identities=22% Similarity=0.338 Sum_probs=92.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
...++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 11 ~~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF---------------HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CceEEEEEEEEEeCCe---------------EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 4579999999999642 59999999999999999999999999999999999986 589999
Q ss_pred EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374 479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK-GLPLDS 530 (536)
Q Consensus 479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk-g~~~~~ 530 (536)
.++|.++.. ..+....++.+||+||+..+++ +|++||+.+..... +.+.++
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~ 128 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAE 128 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHH
Confidence 999998842 1233456788999999998887 89999998866543 444433
No 117
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.4e-19 Score=182.76 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=94.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++... ....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 ~i~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP----------TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceec
Confidence 3789999999975310 112599999999999999999999999999999999999999999999998765
Q ss_pred CCc-----------------------ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSS-----------------------VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~-----------------------~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
... .+....++.+||+||++ .++ ..||+||+.+.....|.+.+++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~ 144 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKR 144 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHH
Confidence 210 12345678899999984 455 5799999998776678776655443
No 118
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.7e-19 Score=180.52 Aligned_cols=116 Identities=17% Similarity=0.309 Sum_probs=93.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|+|++.. +..++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 4 ~l~~~~l~~~~~~~~---------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE---------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC---------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEec
Confidence 689999999997531 00123599999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCCC--CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNI--LWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
.........++.+||+||++. ++ ..|+.|++.+.....|++.++.
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~ 121 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEI 121 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHH
Confidence 432223456788999999963 45 4699999998776666664443
No 119
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3e-19 Score=183.07 Aligned_cols=117 Identities=15% Similarity=0.331 Sum_probs=94.3
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++... ....+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus 20 ~~l~~~nl~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~ 89 (320)
T PRK13631 20 IILRVKNLYCVFDEKQE----------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIY 89 (320)
T ss_pred ceEEEEeEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEE
Confidence 46999999999974310 11259999999999999999999999999999999999999999999999998
Q ss_pred cCCc---------------ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374 485 IRSS---------------VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIK 532 (536)
Q Consensus 485 i~~~---------------~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~ 532 (536)
+... .+....|+.+|||||++ .+++. |++||+.+.....+.+.++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~ 153 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAK 153 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHH
Confidence 7421 12456788999999986 57764 999999876554566555443
No 120
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.1e-19 Score=179.79 Aligned_cols=110 Identities=24% Similarity=0.360 Sum_probs=90.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++.. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~--------------~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (277)
T PRK13652 3 LIETRDLCYSYSGSK--------------EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI 68 (277)
T ss_pred eEEEEEEEEEeCCCC--------------ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 478999999996421 499999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
.. ...+..++.+||+||++. .+.++|++||+.+.....+.+.++
T Consensus 69 ~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 113 (277)
T PRK13652 69 TK-ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEET 113 (277)
T ss_pred Cc-CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHH
Confidence 43 233456778999999973 333689999998766544555443
No 121
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.3e-19 Score=177.27 Aligned_cols=107 Identities=22% Similarity=0.387 Sum_probs=90.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
.+.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 4 ~~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14242 4 PPKMEARGLSFFYGDF---------------QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68 (253)
T ss_pred CcEEEEeeeEEEECCe---------------eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE
Confidence 3579999999999642 59999999999999999999999999999999999864 689999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.++|+++... .+....++.+||+||++.+++ .|++||+.+....++.
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~ 116 (253)
T PRK14242 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV 116 (253)
T ss_pred EECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC
Confidence 9999988421 123456788999999999988 5999999887655554
No 122
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.80 E-value=2.5e-19 Score=174.38 Aligned_cols=107 Identities=20% Similarity=0.373 Sum_probs=91.0
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|+++. +++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-----------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCCC-----------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence 67899999996421 1236999999999999999999999999999999999999999999999999874
Q ss_pred Cccc--HHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 487 SSVS--MTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 487 ~~~~--~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
.... ....++.+||+||++.+++++|+.||+.+.....
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~ 110 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ 110 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhc
Confidence 2111 2245788999999999999999999999876654
No 123
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.8e-19 Score=176.03 Aligned_cols=102 Identities=22% Similarity=0.369 Sum_probs=89.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 68 (237)
T PRK11614 4 VMLSFDKVSAHYGKI---------------QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKD 68 (237)
T ss_pred cEEEEEeEEEeeCCc---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEe
Confidence 368999999999642 59999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+......+..++.+||+||++.+++.+|++||+.+..
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 69 ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred cCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhh
Confidence 7432222235678999999999999999999998743
No 124
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=177.74 Aligned_cols=103 Identities=22% Similarity=0.442 Sum_probs=88.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSFGK---------------EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence 47899999999642 599999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.. ......++.+||+||++.+++ .|++||+.+....++
T Consensus 68 ~~-~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~ 105 (241)
T PRK14250 68 KT-IDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG 105 (241)
T ss_pred hh-cChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC
Confidence 42 233456778999999999887 699999987544433
No 125
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.2e-19 Score=168.98 Aligned_cols=99 Identities=24% Similarity=0.462 Sum_probs=86.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~---------------~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYGQK---------------TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEECCe---------------EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 3688999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred Ccc-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSV-SMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
... .....++.++|+||++.+++.+|++|++.+.
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 211 1345678899999999999999999998753
No 126
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.80 E-value=4.3e-19 Score=182.71 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=97.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++||+|.|+...... .+....+.+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~--~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~ 83 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQ--WFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK 83 (331)
T ss_pred CceEEEeCeEEEECCCCccc--cccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCE
Confidence 45799999999996421000 0000112347999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhc--CCChHhHh
Q 009374 484 SIRSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIK--GLPLDSIK 532 (536)
Q Consensus 484 ~i~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk--g~~~~~~~ 532 (536)
++.... +....|+++||+||++ .|++.+|+.||+.+..... ++++++.+
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~ 138 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVK 138 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHH
Confidence 985322 2334678899999997 6899999999998765443 35554443
No 127
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.4e-19 Score=177.78 Aligned_cols=107 Identities=24% Similarity=0.348 Sum_probs=90.9
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--c---CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--p---t~G~i 478 (536)
+..++++|++|.|++. .+++|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|
T Consensus 10 ~~~l~i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i 74 (259)
T PRK14274 10 QEVYQINGMNLWYGQH---------------HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM 74 (259)
T ss_pred CceEEEeeEEEEECCe---------------eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE
Confidence 4579999999999642 59999999999999999999999999999999999987 3 68999
Q ss_pred EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+++|.++.. ..+....++.+||+||++.+++. |++||+.+....++.
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 122 (259)
T PRK14274 75 NYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT 122 (259)
T ss_pred EECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC
Confidence 999998742 11234567889999999999885 999999887666654
No 128
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.80 E-value=3e-19 Score=174.15 Aligned_cols=105 Identities=30% Similarity=0.532 Sum_probs=90.0
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~l~~v~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFGKQ---------------TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEECCE---------------EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc
Confidence 3688999999642 5999999999999999999999999999999999999999999999998873
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
. .. ++.+||+||++.+++.+|++||+.++...++.+.+++
T Consensus 66 ~----~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 105 (223)
T TIGR03740 66 R----KD-LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRI 105 (223)
T ss_pred c----cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHH
Confidence 2 11 3579999999999999999999998776666554443
No 129
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.80 E-value=4.6e-19 Score=167.44 Aligned_cols=98 Identities=21% Similarity=0.308 Sum_probs=85.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.| +++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~l~~~~l~~~~-------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG-------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe-------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 68899998876 79999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCC---CCCCCCCHHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFN---ILWDALSGEEHLHLFAN 522 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~L~~~~~ 522 (536)
......+..++.+|||||+. .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~ 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh
Confidence 53222334577899999984 68899999999988654
No 130
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.8e-19 Score=177.00 Aligned_cols=104 Identities=18% Similarity=0.332 Sum_probs=90.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc---cCccEEEEcC
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG 482 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i~i~g 482 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g 66 (246)
T PRK14269 2 IAKTTNLNLFYGKK---------------QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG 66 (246)
T ss_pred ceeeeeeEEEECCE---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC
Confidence 47899999999642 59999999999999999999999999999999999974 7999999999
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+++.. .+....++.+||+||++.+++ .|++||+.+..+.++.
T Consensus 67 ~~i~~-~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~ 108 (246)
T PRK14269 67 KDVKN-QDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM 108 (246)
T ss_pred Eeccc-CCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc
Confidence 99853 234566788999999999997 6999999987666553
No 131
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.5e-19 Score=179.76 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=91.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++... ..+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGTP----------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCCc----------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 4789999999974210 012599999999999999999999999999999999999999999999999987
Q ss_pred CCc---ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 486 RSS---VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 486 ~~~---~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
... .+....++.+||+||++ .+++ .|++||+.+.....+.+.++
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~ 120 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEE 120 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHH
Confidence 421 12355678899999996 4565 69999999876555554433
No 132
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.1e-19 Score=179.03 Aligned_cols=108 Identities=22% Similarity=0.406 Sum_probs=91.9
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
...++++|+++.|++. .+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 11 ~~~l~i~nl~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v 75 (269)
T PRK14259 11 NIIISLQNVTISYGTF---------------EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV 75 (269)
T ss_pred CceEEEEeEEEEECCE---------------EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 3579999999999642 59999999999999999999999999999999999987 699999
Q ss_pred EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
.++|.++.. ..+....++.+||+||++.+++. |++||+.+.+..++..
T Consensus 76 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~ 124 (269)
T PRK14259 76 LFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT 124 (269)
T ss_pred EECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc
Confidence 999998742 12334567789999999999984 9999999877665543
No 133
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.1e-19 Score=173.98 Aligned_cols=115 Identities=27% Similarity=0.464 Sum_probs=102.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+++++++..|++. ..+++|+|+++++||+++|+|||||||||++++++|+++|++|.|.++|.++
T Consensus 3 ~i~~~~l~~~y~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPGR--------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCCC--------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeec
Confidence 57899999999753 2699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
....+..++|+++|+++|++ .++.. ||+|.+.|...-.|++++++++++
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv 119 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERV 119 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHH
Confidence 53245678899999999985 66655 999999999999999998877765
No 134
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.6e-19 Score=175.59 Aligned_cols=96 Identities=22% Similarity=0.452 Sum_probs=82.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..|+++|++..|++. +||+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+.|.+
T Consensus 3 ~~i~v~nl~v~y~~~---------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~ 67 (254)
T COG1121 3 PMIEVENLTVSYGNR---------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKP 67 (254)
T ss_pred cEEEEeeeEEEECCE---------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccc
Confidence 468999999999753 49999999999999999999999999999999999999999999999988
Q ss_pred cCCcccHHHhhcceEEEcCC---CCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQF---NILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~---~~l~~~lTv~e~L~~~ 520 (536)
++.. .-+.+|||+||. |.-|| +||+|-+.+.
T Consensus 68 ~~~~----~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g 101 (254)
T COG1121 68 VRKR----RKRLRIGYVPQKSSVDRSFP-ITVKDVVLLG 101 (254)
T ss_pred cccc----ccCCeEEEcCcccccCCCCC-cCHHHHHHcc
Confidence 7421 114689999995 34444 6999999885
No 135
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.7e-19 Score=166.66 Aligned_cols=95 Identities=29% Similarity=0.575 Sum_probs=84.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++++.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 3678999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLH 518 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~ 518 (536)
.. . ...++.+||+||++.+++.+|++||+.
T Consensus 66 ~~-~-~~~~~~i~~~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 66 KE-P-EEVKRRIGYLPEEPSLYENLTVRENLK 95 (173)
T ss_pred cc-h-HhhhccEEEEecCCccccCCcHHHHhh
Confidence 32 2 456778999999999999999999986
No 136
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.2e-19 Score=177.54 Aligned_cols=102 Identities=28% Similarity=0.439 Sum_probs=88.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 68 (255)
T PRK11300 4 PLLSVSGLMMRFGGL---------------LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH 68 (255)
T ss_pred ceEEEeeEEEEECCE---------------EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE
Confidence 368999999999642 59999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+......+..+..++|+||++.+++.+|++||+.+..
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 105 (255)
T PRK11300 69 IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQ 105 (255)
T ss_pred CCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhh
Confidence 8532212223456999999999999999999998753
No 137
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.9e-19 Score=177.44 Aligned_cols=107 Identities=20% Similarity=0.351 Sum_probs=90.9
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i 478 (536)
...++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|
T Consensus 17 ~~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I 81 (267)
T PRK14235 17 EIKMRARDVSVFYGEK---------------QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI 81 (267)
T ss_pred CceEEEEeEEEEECCE---------------EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence 4479999999999642 599999999999999999999999999999999999874 89999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+++|.++... .+....++.+||+||++.+++. |++||+.+....++.
T Consensus 82 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 129 (267)
T PRK14235 82 TLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL 129 (267)
T ss_pred EECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc
Confidence 9999988421 1234567889999999998885 999999876655553
No 138
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.3e-19 Score=176.26 Aligned_cols=106 Identities=22% Similarity=0.417 Sum_probs=90.8
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL 479 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~ 479 (536)
+.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.
T Consensus 3 ~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~ 67 (251)
T PRK14270 3 IKMESKNLNLWYGEK---------------QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67 (251)
T ss_pred cEEEEEEeEEEECCe---------------eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE
Confidence 468999999999642 599999999999999999999999999999999999875 799999
Q ss_pred EcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 480 IYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 480 i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
++|.++... .+....++.+||+||++.+++ +|++||+.+.....+.
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~ 114 (251)
T PRK14270 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI 114 (251)
T ss_pred ECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC
Confidence 999988421 123455778999999999997 8999999987666554
No 139
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.9e-19 Score=180.55 Aligned_cols=106 Identities=21% Similarity=0.371 Sum_probs=88.7
Q ss_pred EEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (536)
Q Consensus 408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~ 487 (536)
.+++++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 26 ~~~~~~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~ 90 (269)
T cd03294 26 SKEEILKKTGQT---------------VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAA 90 (269)
T ss_pred hhhhhhhhcCCc---------------eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccc
Confidence 456888888643 59999999999999999999999999999999999999999999999998742
Q ss_pred ccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 488 SVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 488 ~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
... ..+. ++.+||+||++.+++.+|++||+.+.....+.+.
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 134 (269)
T cd03294 91 MSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPR 134 (269)
T ss_pred cChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 111 1112 3579999999999999999999998766666543
No 140
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.80 E-value=3.8e-19 Score=176.75 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=89.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++||++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFGIL---------------TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeCCe---------------eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4688999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred Cc------------ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCCh
Q 009374 487 SS------------VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLPL 528 (536)
Q Consensus 487 ~~------------~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~~ 528 (536)
.. .+....++.+||+||++.+++.+|++||+.+.. ..++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~ 120 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCH
Confidence 21 112355788999999999999999999998743 2334443
No 141
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5.2e-19 Score=175.74 Aligned_cols=106 Identities=21% Similarity=0.341 Sum_probs=90.3
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--c---CccEEE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDAL 479 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--p---t~G~i~ 479 (536)
..++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.
T Consensus 3 ~~l~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~ 67 (252)
T PRK14256 3 NKVKLEQLNVHFGKN---------------HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL 67 (252)
T ss_pred cEEEEEEEEEEeCCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE
Confidence 358999999999642 59999999999999999999999999999999999986 4 689999
Q ss_pred EcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 480 IYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 480 i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
++|.++... .+....++.+||+||+..+++.+|++||+.+..+..+
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 114 (252)
T PRK14256 68 LDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG 114 (252)
T ss_pred ECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC
Confidence 999988421 1234567889999999999999999999987655444
No 142
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.79 E-value=2.3e-19 Score=177.22 Aligned_cols=99 Identities=25% Similarity=0.487 Sum_probs=86.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYPNG--------------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecCCC--------------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence 6789999999621 15999999999999999999999999999999999999999999999999874
Q ss_pred Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
... +....++.+||+||++.+++.+|++||+.+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 102 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLH 102 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhh
Confidence 211 123457789999999999999999999975
No 143
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.5e-19 Score=178.61 Aligned_cols=113 Identities=20% Similarity=0.344 Sum_probs=94.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++.. .+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++
T Consensus 4 ~l~~~~l~~~~~~~~------------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKES------------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCCC------------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 689999999996421 12599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
.. ....+.++.+||+||++. .++..|+.||+.+.....+.+.++.
T Consensus 72 ~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~ 117 (277)
T PRK13642 72 TA-ENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEM 117 (277)
T ss_pred Cc-CCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHH
Confidence 53 234566788999999974 6778899999987655555554443
No 144
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5e-19 Score=176.05 Aligned_cols=106 Identities=21% Similarity=0.359 Sum_probs=90.2
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL 479 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~ 479 (536)
..++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.
T Consensus 6 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 70 (254)
T PRK14273 6 AIIETENLNLFYTDF---------------KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI 70 (254)
T ss_pred ceEEEeeeEEEeCCc---------------eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE
Confidence 479999999999642 599999999999999999999999999999999999987 589999
Q ss_pred EcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 480 IYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 480 i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
++|.++.. ..+....++.+||+||++.+++ +|++||+.+....++.
T Consensus 71 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~ 117 (254)
T PRK14273 71 YEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT 117 (254)
T ss_pred ECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC
Confidence 99998742 1123456788999999998885 9999999987655543
No 145
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.4e-19 Score=174.87 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=89.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYGGF---------------VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 3688999999642 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
.. ...++.+|||||++.+++.+|++||+.+....++..
T Consensus 66 ~~---~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~ 103 (232)
T cd03300 66 NL---PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP 103 (232)
T ss_pred cC---ChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC
Confidence 21 223678999999999999999999998866666554
No 146
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.79 E-value=3.5e-19 Score=175.41 Aligned_cols=103 Identities=22% Similarity=0.423 Sum_probs=89.5
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++++.|++. .+++|+||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFGSF---------------QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEECCe---------------eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 3688999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
. ....++.+|||||++.+++.+|++||+.+....++..
T Consensus 66 ~---~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~ 103 (237)
T TIGR00968 66 R---VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP 103 (237)
T ss_pred c---CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCC
Confidence 2 1234678999999999999999999998766655543
No 147
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.7e-19 Score=177.94 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=90.0
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQDE---------------PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcCCc---------------ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcc
Confidence 6899999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred C-cccHHHhhcceEEEcCCCCC-CCCCCHHHHHHHHHHhcCCChHh
Q 009374 487 S-SVSMTNIQKSIGVCPQFNIL-WDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 487 ~-~~~~~~~~~~ig~~pQ~~~l-~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
. ..+....++.+||+||++.+ +...|+.||+.+.....|.+.++
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 112 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAE 112 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHH
Confidence 1 12234567789999999753 34568999998876666655443
No 148
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.3e-19 Score=169.09 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=98.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||++.|+++.. ..+||+++||++.+||++||+|++|||||||.++|+|+.+|++|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~~-----------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGKF-----------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCcc-----------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence 6899999999987532 12699999999999999999999999999999999999999999999999877
Q ss_pred CCcccHHHhhcceEEEcCC--CCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 486 RSSVSMTNIQKSIGVCPQF--NILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~--~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
......+..++.+.++||+ ..|.|..||++.|.-..+.+|++..+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~ 118 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ 118 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHH
Confidence 5433334667889999998 47899999999999988888876543
No 149
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.79 E-value=4.3e-19 Score=176.62 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=86.2
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 11 ~~l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 75 (257)
T PRK11247 11 TPLLLNAVSKRYGER---------------TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP 75 (257)
T ss_pred CcEEEEEEEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 469999999999642 59999999999999999999999999999999999999999999999876
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+ ...++.+||+||++.+++.+|++||+.+.
T Consensus 76 ~------~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 76 L------AEAREDTRLMFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred H------HHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence 5 24567899999999999999999999874
No 150
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4.7e-19 Score=174.25 Aligned_cols=104 Identities=18% Similarity=0.374 Sum_probs=89.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++++.|++ ++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 1 l~~~~l~~~~~~----------------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWKE----------------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeCC----------------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence 357899999953 3899999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
.. ...++.+|||||++.+++.+|++||+.+.....+.+..
T Consensus 65 ~~---~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 104 (235)
T cd03299 65 NL---PPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKK 104 (235)
T ss_pred cC---ChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHH
Confidence 21 22367899999999999999999999876555555433
No 151
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7e-19 Score=174.59 Aligned_cols=105 Identities=21% Similarity=0.395 Sum_probs=89.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i 480 (536)
.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14240 3 KISVKDLDLFYGDF---------------QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLL 67 (250)
T ss_pred eEEEEEEEEEECCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 47899999999642 599999999999999999999999999999999998763 6999999
Q ss_pred cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+|.++.. ..+....|+.+||+||++.+++ +|++||+.+....++.
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~ 113 (250)
T PRK14240 68 DGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI 113 (250)
T ss_pred CCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC
Confidence 9998842 1123456788999999999888 8999999987666664
No 152
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.79 E-value=4.4e-19 Score=175.14 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=85.4
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCEe
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGFS 484 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~~ 484 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+. +|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 65 (243)
T TIGR01978 1 LKIKDLHVSVEDK---------------EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD 65 (243)
T ss_pred CeEeeEEEEECCE---------------EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEe
Confidence 4688999999642 5999999999999999999999999999999999995 7999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
+.........+..+||+||++.+++.+|++|++.+...
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~ 103 (243)
T TIGR01978 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALN 103 (243)
T ss_pred cCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHH
Confidence 74321112234559999999999999999999987543
No 153
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=5.1e-19 Score=177.10 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=89.4
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~l~i~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 73 (265)
T PRK10575 9 DTTFALRNVSFRVPGR---------------TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 (265)
T ss_pred CceEEEeeEEEEECCE---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence 3469999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++.. ....+.++.+||+||+..+++.+|+.|++.+.
T Consensus 74 ~~~~-~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 74 PLES-WSSKAFARKVAYLPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred ehhh-CCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence 8742 23345677899999998899999999999874
No 154
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.7e-19 Score=163.31 Aligned_cols=110 Identities=22% Similarity=0.362 Sum_probs=97.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+.+++++-+|.+.. ..|++|+|++|.+||.+.+|||+||||||++|+++|+.+|+.|+|.++|+.|
T Consensus 3 ~l~~~~~sl~y~g~~-------------~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i 69 (259)
T COG4525 3 MLNVSHLSLSYEGKP-------------RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI 69 (259)
T ss_pred eeehhheEEecCCcc-------------hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEec
Confidence 356788999998652 3699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
... ...-|+++|++.|+|-+|+.||++|..+++|+++.+..+.
T Consensus 70 ~gP------gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 70 EGP------GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred cCC------CccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 532 2235999999999999999999999999999998776554
No 155
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.8e-19 Score=175.59 Aligned_cols=107 Identities=24% Similarity=0.395 Sum_probs=90.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
...++++|+++.|++. .+++|+||++++||++||+|+||||||||+++|+|+++ |++|+|
T Consensus 18 ~~~l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (267)
T PRK14237 18 EIALSTKDLHVYYGKK---------------EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82 (267)
T ss_pred CeEEEEeeEEEEECCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence 3479999999999542 59999999999999999999999999999999999986 589999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.++|.++... .+....++.+||+||++.+++ .|++||+.+.....|.
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~ 130 (267)
T PRK14237 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGV 130 (267)
T ss_pred EECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCC
Confidence 9999988421 123456788999999998887 5999999886554443
No 156
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.7e-20 Score=169.48 Aligned_cols=110 Identities=21% Similarity=0.363 Sum_probs=96.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+++++|++|+|+++ .+++++|+++++|.+++++||||||||||++|++++.++++|+|+++|+++
T Consensus 1 MI~i~nv~K~y~~~---------------~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~ 65 (252)
T COG4604 1 MITIENVSKSYGTK---------------VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL 65 (252)
T ss_pred CeeehhhhHhhCCE---------------EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeec
Confidence 37889999999764 699999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH--HHHhcCCChHhH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL--FANIKGLPLDSI 531 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~--~~~lkg~~~~~~ 531 (536)
.+ ++.++..+.+.+.-|.+.+-..+||+|-+.| |..-+|.+.++.
T Consensus 66 ~~-~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD 112 (252)
T COG4604 66 TS-TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKED 112 (252)
T ss_pred cc-CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHH
Confidence 74 4566777889999999999999999999988 334566654443
No 157
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.78 E-value=8e-19 Score=171.23 Aligned_cols=114 Identities=23% Similarity=0.327 Sum_probs=88.5
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc--CE-
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY--GF- 483 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~--g~- 483 (536)
++++|++|.|++.++ ....+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~--------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ--------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC--------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCc
Confidence 688999999964210 0011369999999999999999999999999999999999999999999998 43
Q ss_pred -ecCCcc--cHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 484 -SIRSSV--SMTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 484 -~i~~~~--~~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
++.... +..+. ++.+||+||+..+++.+|++|++.+.....|...
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 122 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPR 122 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCH
Confidence 442111 11122 4579999999999999999999987655445543
No 158
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.6e-19 Score=176.86 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=89.4
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+
T Consensus 5 ~~~l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 69 (265)
T PRK10253 5 VARLRGEQLTLGYGKY---------------TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE 69 (265)
T ss_pred ccEEEEEEEEEEECCE---------------EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE
Confidence 3479999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++.. .+....++.+|||||++.+++.+|++||+.+.
T Consensus 70 ~~~~-~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 70 HIQH-YASKEVARRIGLLAQNATTPGDITVQELVARG 105 (265)
T ss_pred Ehhh-CCHHHHhhheEEeeccCcCCCCCcHHHHHHhC
Confidence 8742 23345567899999999999999999999874
No 159
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.78 E-value=9e-19 Score=175.53 Aligned_cols=112 Identities=22% Similarity=0.253 Sum_probs=90.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|+|+++... ++.+.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~------~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW------FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCCc------ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 68999999999642100 001123699999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCCC--CCCCCCHHHHHHHHHHhc
Q 009374 486 RSSVSMTNIQKSIGVCPQFNI--LWDALSGEEHLHLFANIK 524 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~~~lk 524 (536)
.. ...+..++.+||+||++. +++.+|+.|++.+..+..
T Consensus 78 ~~-~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 78 HF-GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred CC-CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 42 223344567999999975 678899999998865543
No 160
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1e-18 Score=173.51 Aligned_cols=106 Identities=19% Similarity=0.333 Sum_probs=90.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-----ccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-----~G~i~i 480 (536)
.++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.+
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 68 (252)
T PRK14272 4 LLSAQDVNIYYGDK---------------QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL 68 (252)
T ss_pred EEEEeeeEEEECCE---------------EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEE
Confidence 58899999999642 5999999999999999999999999999999999999875 899999
Q ss_pred cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+|.++... .+....++.+||+||++.+++.+|+.||+.+.....+.
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~ 115 (252)
T PRK14272 69 DGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI 115 (252)
T ss_pred CCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCC
Confidence 99987421 12335677899999999999999999999876554443
No 161
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=9.7e-19 Score=176.03 Aligned_cols=107 Identities=33% Similarity=0.479 Sum_probs=87.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPDG--------------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc
Confidence 6799999999632 14999999999999999999999999999999999999999999999999884
Q ss_pred C-cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCCh
Q 009374 487 S-SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 487 ~-~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
. .......++.+||+||++ .++ .+|++||+.+.....+...
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~ 111 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSK 111 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCH
Confidence 2 112345678899999996 344 5799999986543334443
No 162
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=2.1e-19 Score=164.88 Aligned_cols=102 Identities=28% Similarity=0.413 Sum_probs=93.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC-E
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-F 483 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g-~ 483 (536)
..+.+++++.+|++- .||+++||+|.+||.-+|+|||||||||+|..|+|-.+|+.|+++++| .
T Consensus 4 ~iL~~~~vsVsF~GF---------------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~ 68 (249)
T COG4674 4 IILYLDGVSVSFGGF---------------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT 68 (249)
T ss_pred ceEEEeceEEEEcce---------------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCch
Confidence 468999999999763 699999999999999999999999999999999999999999999999 8
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
|+....+.+-+|..||--+|.+..|+++||+|||++-.
T Consensus 69 dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~ 106 (249)
T COG4674 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELAL 106 (249)
T ss_pred hhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHh
Confidence 88766666778889999999999999999999998843
No 163
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1.2e-19 Score=177.68 Aligned_cols=131 Identities=21% Similarity=0.317 Sum_probs=108.1
Q ss_pred ceEEEeeeEEEcCCCCc-------Cccc--cccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374 405 VAVQIRGLVKTFPGTRK-------IGCC--CKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~-------~~~~--~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~ 475 (536)
..++++|+.|.|+.... .|.. -..++++-+..|+|+||+|++|||+.|.|-+|||||||+|++.++.+||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 36899999999986421 0000 00145556678999999999999999999999999999999999999999
Q ss_pred cEEEEcCEecCC--cccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 476 GDALIYGFSIRS--SVSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 476 G~i~i~g~~i~~--~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
|+|.++|.|+.. ..+.++.| +++++++|+.+|+|+.||.||..|...++|+++++.++.+
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a 145 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA 145 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHH
Confidence 999999999853 23344554 5799999999999999999999999999999998876654
No 164
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.3e-18 Score=165.76 Aligned_cols=110 Identities=27% Similarity=0.376 Sum_probs=91.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF 483 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~ 483 (536)
.++++++++.|++.. +.+.+++|+||++++||+++|+|+||||||||+++|+|+. +|++|++.++|+
T Consensus 3 ~l~~~~l~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~ 71 (192)
T cd03232 3 VLTWKNLNYTVPVKG-----------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR 71 (192)
T ss_pred EEEEeeeEEEecCCC-----------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE
Confidence 578999999996421 0125999999999999999999999999999999999986 489999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
++. ...++.+||++|++.+++.+|++||+.+...++.++..+.
T Consensus 72 ~~~-----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~ 114 (192)
T cd03232 72 PLD-----KNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114 (192)
T ss_pred ehH-----HHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHHh
Confidence 873 3556789999999999999999999998655445554443
No 165
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=9.3e-19 Score=173.57 Aligned_cols=105 Identities=22% Similarity=0.369 Sum_probs=89.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i 480 (536)
.++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 67 (249)
T PRK14253 3 KFNIENLDLFYGEN---------------QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTM 67 (249)
T ss_pred eEEEeccEEEECCe---------------eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 57899999999642 599999999999999999999999999999999999986 5999999
Q ss_pred cCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 481 YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 481 ~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+|.++....+....++.+||+||++.+++ .|+.||+.+.....+.
T Consensus 68 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~ 112 (249)
T PRK14253 68 DGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGI 112 (249)
T ss_pred CCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCC
Confidence 99987422234466788999999999997 8999999876544443
No 166
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.78 E-value=6.8e-19 Score=175.33 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=87.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAGGR---------------LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEECCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc
Confidence 6789999999642 5999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
. ......++.+||+||++.+++.+|++||+.+.
T Consensus 67 ~-~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 67 G-LSRRARARRVALVEQDSDTAVPLTVRDVVALG 99 (256)
T ss_pred c-CCHHHHhhheEEecccCccCCCCCHHHHHHhc
Confidence 3 23345567899999998888899999999875
No 167
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=8.2e-19 Score=169.11 Aligned_cols=101 Identities=20% Similarity=0.323 Sum_probs=87.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++++++.|++.. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~-------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 71 (207)
T cd03369 5 GEIEVENLSVRYAPDL-------------PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID 71 (207)
T ss_pred CeEEEEEEEEEeCCCC-------------cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence 3589999999996421 159999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.. ....+.++.+|||||++.+++ .|++||+.++
T Consensus 72 ~~~-~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~ 105 (207)
T cd03369 72 IST-IPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPF 105 (207)
T ss_pred hHH-CCHHHHHhhEEEEecCCcccC-ccHHHHhccc
Confidence 742 234456788999999998887 5999999764
No 168
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.78 E-value=1.1e-18 Score=174.63 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=88.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+++++|++|.|++.... ++.+.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~------~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 75 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLF------GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL 75 (265)
T ss_pred eEEEEeEEEEeccCccc------cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 47899999999632000 000123699999999999999999999999999999999999999999999999988
Q ss_pred CCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHH
Q 009374 486 RSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFAN 522 (536)
Q Consensus 486 ~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~ 522 (536)
.... +....++.+||+||++ .+++.+|++|++.+...
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 116 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLR 116 (265)
T ss_pred cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHH
Confidence 5321 1223567899999996 57788999999976543
No 169
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.2e-18 Score=176.75 Aligned_cols=115 Identities=18% Similarity=0.334 Sum_probs=91.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|+++.. ..+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP----------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCCc----------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 35899999999965310 01249999999999999999999999999999999999999999999999998
Q ss_pred cCC----cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 485 IRS----SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 485 i~~----~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
+.. ..+....++.+||+||++ .+++ .|++||+.+....++...++
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~ 125 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQE 125 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHH
Confidence 731 112345677899999996 3444 69999998765545554433
No 170
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.8e-18 Score=173.39 Aligned_cols=106 Identities=21% Similarity=0.373 Sum_probs=89.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
...++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 19 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 83 (268)
T PRK14248 19 EHILEVKDLSIYYGEK---------------RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83 (268)
T ss_pred CceEEEEEEEEEeCCc---------------eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE
Confidence 4579999999999642 59999999999999999999999999999999999864 799999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.++|.++... .+....++.+||+||++.+++. |++||+.+.....+
T Consensus 84 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~ 130 (268)
T PRK14248 84 LYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG 130 (268)
T ss_pred EECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC
Confidence 9999988421 1233567789999999999885 99999987654443
No 171
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=6.8e-19 Score=168.07 Aligned_cols=117 Identities=25% Similarity=0.347 Sum_probs=89.6
Q ss_pred eEEEeeeEEEcCCCCcC--------cccc-ccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 406 AVQIRGLVKTFPGTRKI--------GCCC-KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~--------~~~~-~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
.|+++||+|.|+-.... -.+. ..++...+.||+|+||++++||.+||+|+||||||||+++|+|.++||+|
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 57788888887643100 0000 00234567899999999999999999999999999999999999999999
Q ss_pred EEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 477 DALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 477 ~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
+|.++|.-.. . + .+|. .+-+++|++||+.+.+.+.|++++++++.+
T Consensus 83 ~v~v~G~v~~----l--i--~lg~-----Gf~pelTGreNi~l~~~~~G~~~~ei~~~~ 128 (249)
T COG1134 83 KVKVTGKVAP----L--I--ELGA-----GFDPELTGRENIYLRGLILGLTRKEIDEKV 128 (249)
T ss_pred eEEEcceEeh----h--h--hccc-----CCCcccchHHHHHHHHHHhCccHHHHHHHH
Confidence 9999995321 1 1 1222 345789999999999999999999988765
No 172
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=5.8e-19 Score=170.65 Aligned_cols=95 Identities=20% Similarity=0.363 Sum_probs=82.5
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. . .|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~---------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSYGEQ---------------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEeCCE---------------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence 3688999999531 2 2999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.. ...++.+||+||++.+++.+|++||+.+..
T Consensus 64 ~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 64 AA---PPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred cC---CHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 32 223578999999999999999999998754
No 173
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2e-18 Score=177.62 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=95.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||+|.|+..... . .+.+.+.||+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~--~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~ 78 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGL--F---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD 78 (327)
T ss_pred ceEEEeeeEEEEcCCCCc--c---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 468999999999642110 0 01123479999999999999999999999999999999999999999999999999
Q ss_pred cCCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374 485 IRSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIK-GLPLDS 530 (536)
Q Consensus 485 i~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk-g~~~~~ 530 (536)
+.... +.+..|+++||+||++ .|.+.+|+.+++....+.. ++.+++
T Consensus 79 l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~ 129 (327)
T PRK11308 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAE 129 (327)
T ss_pred cCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHH
Confidence 85322 2345678899999997 6999999999997655443 444443
No 174
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.7e-18 Score=174.06 Aligned_cols=107 Identities=21% Similarity=0.389 Sum_probs=91.2
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
...++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 23 ~~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i 87 (272)
T PRK14236 23 QTALEVRNLNLFYGDK---------------QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI 87 (272)
T ss_pred CcEEEEEEEEEEECCe---------------eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE
Confidence 4579999999999642 59999999999999999999999999999999999987 489999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.++|.++... .+....++.+||+||+..+++. |++||+.+.....+.
T Consensus 88 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 135 (272)
T PRK14236 88 RLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI 135 (272)
T ss_pred EECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC
Confidence 9999988421 1234567889999999999986 999999887665554
No 175
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.78 E-value=1.1e-18 Score=163.38 Aligned_cols=96 Identities=21% Similarity=0.412 Sum_probs=83.5
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++.+ ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPGAE-------------PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence 36889999996421 25999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHL 517 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L 517 (536)
. ......++.+||++|++.+++. |++||+
T Consensus 68 ~-~~~~~~~~~i~~~~q~~~~~~~-tv~~~l 96 (173)
T cd03246 68 Q-WDPNELGDHVGYLPQDDELFSG-SIAENI 96 (173)
T ss_pred c-CCHHHHHhheEEECCCCccccC-cHHHHC
Confidence 3 2344567889999999988875 999997
No 176
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.6e-18 Score=173.99 Aligned_cols=107 Identities=23% Similarity=0.352 Sum_probs=90.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
.+.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|
T Consensus 22 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 86 (271)
T PRK14238 22 KVVFDTQNLNLWYGED---------------HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86 (271)
T ss_pred ceEEEEeeeEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE
Confidence 3479999999999642 59999999999999999999999999999999999987 699999
Q ss_pred EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.++|.++.. .......++.+||+||++.+++. |++||+.+..+.++.
T Consensus 87 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~ 134 (271)
T PRK14238 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGI 134 (271)
T ss_pred EECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCC
Confidence 999998742 11234567889999999998874 999999986655444
No 177
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.8e-18 Score=171.88 Aligned_cols=107 Identities=19% Similarity=0.315 Sum_probs=90.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--c---CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--p---t~G~i 478 (536)
+..++++|++|.|++. .+++|+||++.+||+++|+|+||||||||+++|+|+.+ | ++|+|
T Consensus 3 ~~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 67 (252)
T PRK14255 3 KKIITSSDVHLFYGKF---------------EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV 67 (252)
T ss_pred cceEEEEeEEEEECCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE
Confidence 4568999999999642 59999999999999999999999999999999999865 4 58999
Q ss_pred EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.++|.++.. ..+....++.+||+||++.+++ .|++||+.+....++.
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~ 115 (252)
T PRK14255 68 SLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV 115 (252)
T ss_pred EEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC
Confidence 999998842 1223456778999999999998 7999999987665554
No 178
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.4e-18 Score=172.66 Aligned_cols=107 Identities=24% Similarity=0.392 Sum_probs=90.2
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--c---CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--p---t~G~i 478 (536)
.+.++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|
T Consensus 4 ~~~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14261 4 EIILSTKNLNLWYGEK---------------HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI 68 (253)
T ss_pred cceEEEeeeEEEECCe---------------eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence 3478999999999642 59999999999999999999999999999999999975 3 48999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.++|+++... .+....++.+||+||++.+++. |++||+.+..+.++.
T Consensus 69 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~ 116 (253)
T PRK14261 69 LYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE 116 (253)
T ss_pred EECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC
Confidence 9999998421 1234567789999999999985 999999987666554
No 179
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.1e-18 Score=163.21 Aligned_cols=96 Identities=24% Similarity=0.482 Sum_probs=83.0
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|+++. ..+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|.++.
T Consensus 1 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPGRP-------------KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh
Confidence 36789999996531 15999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHL 517 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L 517 (536)
. ......++.+||+||++.+++ .|++||+
T Consensus 68 ~-~~~~~~~~~i~~~~~~~~~~~-~t~~e~l 96 (171)
T cd03228 68 D-LDLESLRKNIAYVPQDPFLFS-GTIRENI 96 (171)
T ss_pred h-cCHHHHHhhEEEEcCCchhcc-chHHHHh
Confidence 2 233456778999999998887 6999997
No 180
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.8e-18 Score=171.82 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=89.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--cc---CccEEE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PV---TGGDAL 479 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~p---t~G~i~ 479 (536)
..++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+. +| ++|+|.
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~ 68 (252)
T PRK14239 4 PILQVSDLSVYYNKK---------------KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV 68 (252)
T ss_pred ceEEEEeeEEEECCe---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE
Confidence 368999999999642 5999999999999999999999999999999999985 46 589999
Q ss_pred EcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 480 IYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 480 i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
++|.++... .+....++.+||+||+..+++ +|++||+.+....++..
T Consensus 69 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~ 116 (252)
T PRK14239 69 YNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIK 116 (252)
T ss_pred ECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCC
Confidence 999988421 122345778999999999887 89999999876655543
No 181
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=9e-19 Score=174.34 Aligned_cols=99 Identities=17% Similarity=0.372 Sum_probs=87.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+++++|++++|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (255)
T PRK11231 2 TLRTENLTVGYGTK---------------RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI 66 (255)
T ss_pred EEEEEeEEEEECCE---------------EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEh
Confidence 47899999999642 599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. .+....++.+||+||+..+++.+|++|++.+.
T Consensus 67 ~~-~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~ 100 (255)
T PRK11231 67 SM-LSSRQLARRLALLPQHHLTPEGITVRELVAYG 100 (255)
T ss_pred HH-CCHHHHhhheEEecccCCCCCCccHHHHHHhc
Confidence 42 22345567899999999999999999999874
No 182
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.7e-18 Score=171.89 Aligned_cols=105 Identities=22% Similarity=0.384 Sum_probs=89.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i 480 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i 67 (250)
T PRK14262 3 IIEIENFSAYYGEK---------------KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYF 67 (250)
T ss_pred eEEEEeeEEEeCCc---------------eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence 58999999999642 599999999999999999999999999999999999874 8999999
Q ss_pred cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+|.++... .+....++.+||+||++.+++ +|++||+.+.....+.
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~ 113 (250)
T PRK14262 68 KGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV 113 (250)
T ss_pred CCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence 99987421 122345778999999999988 8999999887655543
No 183
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.2e-18 Score=173.50 Aligned_cols=107 Identities=19% Similarity=0.315 Sum_probs=90.0
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC-
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG- 482 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g- 482 (536)
.+.+.+++++|+|++. .+++|+||++.+||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~ 72 (257)
T PRK14246 8 EDVFNISRLYLYINDK---------------AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK 72 (257)
T ss_pred hhheeeeeEEEecCCc---------------eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCE
Confidence 3569999999999653 599999999999999999999999999999999999999998777776
Q ss_pred -----EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 483 -----FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 483 -----~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.++.. .+....++.+||+||++.+++.+|++||+.+....++.
T Consensus 73 ~~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~ 120 (257)
T PRK14246 73 VLYFGKDIFQ-IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI 120 (257)
T ss_pred EEECCccccc-CCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCC
Confidence 34321 12345678899999999999999999999987665543
No 184
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.78 E-value=1e-18 Score=164.47 Aligned_cols=95 Identities=23% Similarity=0.372 Sum_probs=82.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++++.|++.. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPEQE-------------QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCCCC-------------ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence 36789999996531 14899999999999999999999999999999999999999999999999873
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHL 517 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L 517 (536)
. .....++.+||+||++.+++ .|++||+
T Consensus 68 ~--~~~~~~~~i~~~~q~~~~~~-~tv~~~i 95 (178)
T cd03247 68 D--LEKALSSLISVLNQRPYLFD-TTLRNNL 95 (178)
T ss_pred H--HHHHHHhhEEEEccCCeeec-ccHHHhh
Confidence 2 12356778999999998886 7999998
No 185
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.78 E-value=8.5e-19 Score=191.06 Aligned_cols=102 Identities=30% Similarity=0.456 Sum_probs=88.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFPGV---------------KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeCCe---------------EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 68999999999642 599999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
.........++.+||+||++.+++.+||+|++.+...
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 105 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE 105 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence 4322222345679999999999999999999987543
No 186
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=9.4e-19 Score=190.97 Aligned_cols=104 Identities=26% Similarity=0.391 Sum_probs=89.8
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc--CccEEEEcC
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYG 482 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i~g 482 (536)
..++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g 68 (506)
T PRK13549 4 YLLEMKNITKTFGGV---------------KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEG 68 (506)
T ss_pred ceEEEeeeEEEeCCe---------------EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 368999999999642 599999999999999999999999999999999999986 899999999
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
.++......+..++.+||+||++.+++.+|++||+.+....
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 109 (506)
T PRK13549 69 EELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEI 109 (506)
T ss_pred EECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence 99853221223467899999999999999999999886543
No 187
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.8e-18 Score=174.95 Aligned_cols=108 Identities=19% Similarity=0.364 Sum_probs=91.6
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
++.++++++++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 37 ~~~l~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I 101 (285)
T PRK14254 37 ETVIEARDLNVFYGDE---------------QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101 (285)
T ss_pred CceEEEEEEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence 4569999999999642 59999999999999999999999999999999999987 689999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
.++|.++... .+....++.+||+||+..+++. |++||+.+....++.+
T Consensus 102 ~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~ 150 (285)
T PRK14254 102 TFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD 150 (285)
T ss_pred EECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc
Confidence 9999987421 1234567889999999988885 9999998876665544
No 188
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.77 E-value=5.7e-19 Score=170.94 Aligned_cols=92 Identities=22% Similarity=0.434 Sum_probs=80.5
Q ss_pred EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (536)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~ 488 (536)
++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 ~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSYGGH---------------PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEECCE---------------EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--
Confidence 57899999642 5999999999999999999999999999999999999999999999998762
Q ss_pred ccHHHhhcceEEEcCCCCCCC--CCCHHHHHHHHH
Q 009374 489 VSMTNIQKSIGVCPQFNILWD--ALSGEEHLHLFA 521 (536)
Q Consensus 489 ~~~~~~~~~ig~~pQ~~~l~~--~lTv~e~L~~~~ 521 (536)
..++.+||+||++.+.+ .+|++||+.+..
T Consensus 65 ----~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~ 95 (213)
T cd03235 65 ----KERKRIGYVPQRRSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred ----HHHhheEEeccccccccCCCCcHHHHHHhcc
Confidence 35678999999987643 389999998754
No 189
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.2e-18 Score=171.11 Aligned_cols=105 Identities=20% Similarity=0.407 Sum_probs=89.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~i 480 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.+
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i 68 (251)
T PRK14251 4 IISAKDVHLSYGNY---------------EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF 68 (251)
T ss_pred eEEEEeeEEEECCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE
Confidence 58999999999642 59999999999999999999999999999999999987 48999999
Q ss_pred cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+|.++.. ..+....++.+||++|++.+++ .|++||+.+.....+.
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~ 114 (251)
T PRK14251 69 EGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV 114 (251)
T ss_pred CCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC
Confidence 9998742 1223456778999999999886 7999999886555554
No 190
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.77 E-value=8.5e-19 Score=172.55 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=85.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++.. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKPDG-------------PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCCCC-------------ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence 46889999996421 25999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
. .+....++.+||+||++.+++ .|++||+.+.
T Consensus 68 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~ 99 (237)
T cd03252 68 L-ADPAWLRRQVGVVLQENVLFN-RSIRDNIALA 99 (237)
T ss_pred h-cCHHHHhhcEEEEcCCchhcc-chHHHHhhcc
Confidence 2 234456788999999998875 6999999874
No 191
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.8e-18 Score=172.62 Aligned_cols=104 Identities=23% Similarity=0.418 Sum_probs=88.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i 480 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 7 ~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~ 71 (259)
T PRK14260 7 AIKVKDLSFYYNTS---------------KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDF 71 (259)
T ss_pred eEEEEEEEEEECCe---------------EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEE
Confidence 68999999999642 599999999999999999999999999999999999885 4899999
Q ss_pred cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
+|.++.. ..+.+..++.+||+||++.+++ +|++||+.+....++
T Consensus 72 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~ 116 (259)
T PRK14260 72 FGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA 116 (259)
T ss_pred CCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc
Confidence 9998742 1223456778999999999997 899999987655443
No 192
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.1e-18 Score=173.62 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=88.8
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i 478 (536)
...++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|
T Consensus 19 ~~~l~i~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i 83 (276)
T PRK14271 19 APAMAAVNLTLGFAGK---------------TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV 83 (276)
T ss_pred CcEEEEeeEEEEECCE---------------EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE
Confidence 3468999999999642 599999999999999999999999999999999999986 69999
Q ss_pred EEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 479 LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 479 ~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
.++|.++....+....++.+||+||++.+++ +|++||+.+...
T Consensus 84 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~ 126 (276)
T PRK14271 84 LLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVR 126 (276)
T ss_pred EECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHH
Confidence 9999988432223456788999999999988 899999987543
No 193
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.4e-18 Score=170.87 Aligned_cols=106 Identities=21% Similarity=0.372 Sum_probs=90.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-----ccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-----~G~i~i 480 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.+
T Consensus 4 ~l~~~~l~~~~~~~---------------~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 68 (251)
T PRK14249 4 KIKIRGVNFFYHKH---------------QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL 68 (251)
T ss_pred eEEEEEEEEEECCe---------------eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEE
Confidence 58899999999642 5999999999999999999999999999999999999987 699999
Q ss_pred cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
+|.++... .+....++.+||+||++.+++. |++||+.+....++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~ 115 (251)
T PRK14249 69 DNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT 115 (251)
T ss_pred CCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC
Confidence 99987421 1234567889999999999975 9999999876655543
No 194
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.77 E-value=8.4e-19 Score=170.70 Aligned_cols=99 Identities=18% Similarity=0.375 Sum_probs=86.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++++|++.. +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRPNL-------------PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCCCC-------------cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhH
Confidence 78999999996431 15999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
. .+....++.+||+||++.+++ .|++||+.++
T Consensus 70 ~-~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~ 101 (221)
T cd03244 70 K-IGLHDLRSRISIIPQDPVLFS-GTIRSNLDPF 101 (221)
T ss_pred h-CCHHHHhhhEEEECCCCcccc-chHHHHhCcC
Confidence 2 234556788999999999876 5999999754
No 195
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.77 E-value=1.4e-18 Score=165.28 Aligned_cols=94 Identities=26% Similarity=0.355 Sum_probs=78.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC-cccHHHhhcceEEEcCCC--CCCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-SVSMTNIQKSIGVCPQFN--ILWDAL 511 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~-~~~~~~~~~~ig~~pQ~~--~l~~~l 511 (536)
.+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.. ..+....++.+||+||++ .++ .+
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~ 84 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AA 84 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cc
Confidence 59999999999999999999999999999999999999999999999998741 122345677899999997 355 47
Q ss_pred CHHHHHHHHHHhcCCChH
Q 009374 512 SGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 512 Tv~e~L~~~~~lkg~~~~ 529 (536)
|++||+.+.....+.+.+
T Consensus 85 tv~~nl~~~~~~~~~~~~ 102 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEA 102 (190)
T ss_pred cHHHHHHHHHHHcCCCHH
Confidence 999999886555555443
No 196
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.77 E-value=9e-19 Score=192.25 Aligned_cols=111 Identities=23% Similarity=0.433 Sum_probs=95.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++++ .+++|+||++++||.++|+|||||||||++++|.|+++|++|+|.++|.|
T Consensus 333 ~~I~~~~vsf~Y~~~~--------------~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPGSP--------------PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCCCC--------------ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3599999999996531 48999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
+++ . .++.|+++||+||++.+|+. |++||+.+.. ...+.+++.+.
T Consensus 399 i~~-~-~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~--~~~~~e~i~~a 443 (529)
T TIGR02868 399 VSS-L-QDELRRRISVFAQDAHLFDT-TVRDNLRLGR--PDATDEELWAA 443 (529)
T ss_pred hhh-H-HHHHHhheEEEccCcccccc-cHHHHHhccC--CCCCHHHHHHH
Confidence 974 4 67889999999999999987 9999998853 12344554443
No 197
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8.6e-19 Score=172.13 Aligned_cols=100 Identities=22% Similarity=0.455 Sum_probs=86.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++.+ +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPGDG-------------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCCCC-------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence 36889999996531 25899999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
. ......++.+||+||+..+++ .|++||+.+..
T Consensus 68 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~ 100 (234)
T cd03251 68 D-YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGR 100 (234)
T ss_pred h-CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccC
Confidence 2 234456778999999999886 69999998753
No 198
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=6.6e-19 Score=158.42 Aligned_cols=110 Identities=20% Similarity=0.373 Sum_probs=96.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.|++++++|.-+... .++.++++++|.|++||-++|+||+|||||||+-+++|+..|++|+|.+.|+++
T Consensus 6 ii~~~~l~ktvg~~~-----------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQGE-----------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcCCC-----------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcch
Confidence 688999999987642 356899999999999999999999999999999999999999999999999988
Q ss_pred CCccc--HHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 486 RSSVS--MTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 486 ~~~~~--~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
....+ +...| +++|+++|...|.|+||+.||+.+.+.++|-
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge 118 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC
Confidence 54322 23333 6899999999999999999999999999993
No 199
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1e-18 Score=171.09 Aligned_cols=100 Identities=26% Similarity=0.390 Sum_probs=87.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++. ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDEK--------------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCCC--------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH
Confidence 37899999999642 1499999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.. .+....++.+||+||++.+++. |++||+.++.
T Consensus 68 ~~-~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~ 101 (229)
T cd03254 68 RD-ISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGR 101 (229)
T ss_pred HH-cCHHHHhhhEEEecCCchhhhh-HHHHHHhccC
Confidence 42 2344567789999999998886 9999998753
No 200
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.77 E-value=1.9e-18 Score=167.38 Aligned_cols=94 Identities=19% Similarity=0.303 Sum_probs=83.0
Q ss_pred EEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (536)
Q Consensus 408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~ 487 (536)
+++|++|.|++ .++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~-----------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYEH-----------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeCC-----------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc
Confidence 67899999952 4579999999999999999999999999999999999999999999998842
Q ss_pred cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 488 SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 488 ~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
....++.+||+||++.+++.+|++||+.+..
T Consensus 65 ---~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~ 95 (213)
T TIGR01277 65 ---LAPYQRPVSMLFQENNLFAHLTVRQNIGLGL 95 (213)
T ss_pred ---CChhccceEEEeccCccCCCCcHHHHHHhHh
Confidence 1235678999999999999999999998643
No 201
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.1e-18 Score=173.28 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=89.9
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
++.++++++++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 37 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I 101 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF---------------EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL 101 (286)
T ss_pred ceEEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE
Confidence 4578999999999642 59999999999999999999999999999999999864 499999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.++|.++... .+....|+.+||+||++.+++. |++||+.+....++.
T Consensus 102 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 149 (286)
T PRK14275 102 MFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI 149 (286)
T ss_pred EECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC
Confidence 9999987421 1223467789999999998875 999999987665554
No 202
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.77 E-value=1.6e-18 Score=189.18 Aligned_cols=101 Identities=28% Similarity=0.393 Sum_probs=88.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 74 (510)
T PRK15439 10 PLLCARSISKQYSGV---------------EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP 74 (510)
T ss_pred ceEEEEeEEEEeCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 469999999999642 59999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+......+..++.+||+||++.+++.+||+|++.+.
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 110 (510)
T PRK15439 75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFG 110 (510)
T ss_pred CCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcc
Confidence 853221222345799999999999999999999875
No 203
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.77 E-value=1.9e-18 Score=168.81 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=89.5
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc---cCccEEEEcCE
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYGF 483 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i~i~g~ 483 (536)
+.++|++++|++.+ ..+.+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 4 ~~~~~~~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~ 72 (226)
T cd03234 4 LPWWDVGLKAKNWN-----------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72 (226)
T ss_pred ceeecceeeeecCc-----------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCE
Confidence 56889999996531 12369999999999999999999999999999999999999 99999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
++. ....++.+||+||++.+++.+|++||+.+.+...
T Consensus 73 ~~~----~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 109 (226)
T cd03234 73 PRK----PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILR 109 (226)
T ss_pred ECC----hHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhh
Confidence 873 2356788999999999999999999999866544
No 204
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.76 E-value=2.1e-18 Score=172.40 Aligned_cols=100 Identities=25% Similarity=0.377 Sum_probs=87.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcC
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYG 482 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g 482 (536)
.++++||++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g 68 (262)
T PRK09984 4 IIRVEKLAKTFNQH---------------QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLG 68 (262)
T ss_pred EEEEeeEEEEeCCe---------------EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECC
Confidence 68999999999642 5999999999999999999999999999999999999886 49999999
Q ss_pred EecCCc----ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 483 FSIRSS----VSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 483 ~~i~~~----~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.++... .+....++.+||+||++.+++.+|++||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 69 RTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG 110 (262)
T ss_pred EecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence 987421 12345577899999999999999999999764
No 205
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.3e-18 Score=170.92 Aligned_cols=105 Identities=18% Similarity=0.403 Sum_probs=90.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-----ccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-----~G~i~i 480 (536)
.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.+
T Consensus 7 ~l~~~nl~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~ 71 (261)
T PRK14258 7 AIKVNNLSFYYDTQ---------------KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEF 71 (261)
T ss_pred eEEEeeEEEEeCCe---------------eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEE
Confidence 68999999999642 5999999999999999999999999999999999999986 899999
Q ss_pred cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+|.++.. ..+....++.+||+||+..+++ +|++||+.+.....+.
T Consensus 72 ~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~ 117 (261)
T PRK14258 72 FNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW 117 (261)
T ss_pred CCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC
Confidence 9998731 1223456788999999999988 8999999887655554
No 206
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.1e-18 Score=187.94 Aligned_cols=102 Identities=27% Similarity=0.379 Sum_probs=89.9
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 67 (501)
T PRK11288 3 PYLSFDGIGKTFPGV---------------KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE 67 (501)
T ss_pred ceEEEeeeEEEECCE---------------EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 368999999999642 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+......+..++.+||+||++.+++.+|++||+.+..
T Consensus 68 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 104 (501)
T PRK11288 68 MRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQ 104 (501)
T ss_pred CCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcc
Confidence 8432223445778999999999999999999998753
No 207
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.3e-18 Score=169.73 Aligned_cols=106 Identities=24% Similarity=0.385 Sum_probs=88.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc---ccc--CccEEE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI---TPV--TGGDAL 479 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~---~~p--t~G~i~ 479 (536)
+.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.
T Consensus 2 ~~l~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 66 (250)
T PRK14245 2 VKIDARDVNFWYGDF---------------HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66 (250)
T ss_pred cEEEEEEEEEEECCE---------------eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE
Confidence 368899999999642 599999999999999999999999999999999997 454 589999
Q ss_pred EcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 480 IYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 480 i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
++|.++... .+....++.+||+||++.+++ .|++||+.+....++.
T Consensus 67 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~ 113 (250)
T PRK14245 67 IDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV 113 (250)
T ss_pred ECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence 999988421 123456788999999999887 6999999886655554
No 208
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.9e-18 Score=170.78 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=90.1
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i 478 (536)
...++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|
T Consensus 14 ~~~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i 78 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---------------QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78 (265)
T ss_pred CceEEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE
Confidence 3468999999999642 599999999999999999999999999999999999875 79999
Q ss_pred EEcCEecCC---cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 479 LIYGFSIRS---SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 479 ~i~g~~i~~---~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
.++|.++.. ..+....++.+||+||++.+++. |++||+.+.....+.+
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~ 129 (265)
T PRK14252 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVK 129 (265)
T ss_pred EEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCC
Confidence 999987631 11234567789999999999986 9999998765555543
No 209
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.76 E-value=2.2e-18 Score=167.61 Aligned_cols=99 Identities=23% Similarity=0.426 Sum_probs=85.5
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++.. +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPNQE-------------IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH
Confidence 78999999996421 25999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
. .+....++.+||+||++.+++ .|+.||+.+.
T Consensus 70 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~ 101 (220)
T cd03245 70 Q-LDPADLRRNIGYVPQDVTLFY-GTLRDNITLG 101 (220)
T ss_pred H-CCHHHHHhhEEEeCCCCcccc-chHHHHhhcC
Confidence 2 123345678999999998887 6999999764
No 210
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.76 E-value=1.6e-18 Score=195.82 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=96.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++++|++.. ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.+||.|
T Consensus 450 ~~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDG-------------PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCCCC-------------ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 3699999999996431 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
++. -+.+..|+++|||||++.+|+. |++||+.+... .+.+++.+.
T Consensus 517 i~~-~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~i~~a 561 (686)
T TIGR03797 517 LAG-LDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP---LTLDEAWEA 561 (686)
T ss_pred cCc-CCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC---CCHHHHHHH
Confidence 963 4677899999999999999986 99999988632 344554443
No 211
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=3.6e-18 Score=163.14 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=84.0
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|+|+++ .+++ +||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIEQK---------------NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEECCc---------------EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccC
Confidence 6789999999532 3555 99999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
. .. ++.++|++|...+++.+|++||+.+.....+
T Consensus 66 ~---~~--~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 66 N---IA--KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred h---hh--hhhEEeccCCcCCCccCCHHHHHHHHHHhcc
Confidence 2 11 3569999999888899999999988765543
No 212
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.76 E-value=2.6e-18 Score=172.47 Aligned_cols=98 Identities=24% Similarity=0.263 Sum_probs=85.4
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC--------ccEE
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--------GGDA 478 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt--------~G~i 478 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|
T Consensus 2 l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i 66 (272)
T PRK13547 2 LTADHLHVARRHR---------------AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV 66 (272)
T ss_pred eEEEEEEEEECCE---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE
Confidence 6899999999642 5999999999999999999999999999999999999998 9999
Q ss_pred EEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 479 LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 479 ~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.++|.++.. .+..+.++.+||+||++.++..+|++||+.+.
T Consensus 67 ~~~g~~~~~-~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 67 TLNGEPLAA-IDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred EECCEEccc-CCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 999998742 23345566799999998766679999999874
No 213
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1e-18 Score=188.16 Aligned_cols=115 Identities=22% Similarity=0.359 Sum_probs=102.3
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..|+.+|+++.|+.+ +++.+++|+||+|++||++||+||||+||||..++|-.++.|++|+|.+||.|
T Consensus 464 G~IeF~~VsFaYP~R------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCC------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCee
Confidence 469999999999875 35679999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
|++ -+...+|++||++-|++.||.. |++||+.+... ..+.+++++.+
T Consensus 532 i~~-~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AA 578 (716)
T KOG0058|consen 532 ISD-INHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAA 578 (716)
T ss_pred hhh-cCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHH
Confidence 974 5677889999999999999986 99999988665 56677776554
No 214
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.76 E-value=1.8e-18 Score=170.34 Aligned_cols=100 Identities=25% Similarity=0.442 Sum_probs=85.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|+++. .+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~i~~l~~~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPSRP------------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCCCC------------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence 36889999996421 125999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
. .+....++.+||+||++.+++ .|++|++.+.
T Consensus 69 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~ 100 (238)
T cd03249 69 D-LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYG 100 (238)
T ss_pred h-cCHHHHHhhEEEECCchhhhh-hhHHHHhhcc
Confidence 2 223445678999999998886 6999999874
No 215
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.8e-18 Score=170.00 Aligned_cols=106 Identities=23% Similarity=0.420 Sum_probs=89.1
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEEE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDAL 479 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~ 479 (536)
+.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|+
T Consensus 9 ~~l~i~~v~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 73 (264)
T PRK14243 9 TVLRTENLNVYYGSF---------------LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT 73 (264)
T ss_pred eEEEEeeeEEEECCE---------------EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE
Confidence 368999999999642 59999999999999999999999999999999999976 4899999
Q ss_pred EcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 480 IYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 480 i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
++|.++.. ..+....++.+||+||+..+++ .|++||+.+....++.
T Consensus 74 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~ 120 (264)
T PRK14243 74 FHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGY 120 (264)
T ss_pred ECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCc
Confidence 99998731 1123456778999999999888 4999999886654443
No 216
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6.4e-18 Score=173.85 Aligned_cols=114 Identities=13% Similarity=0.215 Sum_probs=90.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc----cCccEEEEc
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIY 481 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~----pt~G~i~i~ 481 (536)
.++++||++.|++.. +.+.||+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++
T Consensus 3 ~L~v~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~ 71 (326)
T PRK11022 3 LLNVDKLSVHFGDES-----------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFN 71 (326)
T ss_pred eEEEeCeEEEECCCC-----------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEEC
Confidence 479999999996531 12469999999999999999999999999999999999997 489999999
Q ss_pred CEecCCcc--cHHHh-hcceEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374 482 GFSIRSSV--SMTNI-QKSIGVCPQFN--ILWDALSGEEHLHLFANIK-GLPLDS 530 (536)
Q Consensus 482 g~~i~~~~--~~~~~-~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk-g~~~~~ 530 (536)
|.++.... +..+. ++.+||+||++ .+.+.+|+.+++....+.. |.+.++
T Consensus 72 G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~ 126 (326)
T PRK11022 72 GQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKT 126 (326)
T ss_pred CEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHH
Confidence 99985322 12222 24799999997 5899999999987655433 444443
No 217
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.75 E-value=2.1e-18 Score=168.51 Aligned_cols=103 Identities=17% Similarity=0.324 Sum_probs=88.1
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++++++.|+++. .+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 9 ~~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 76 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP------------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK 76 (226)
T ss_pred CceEEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC
Confidence 45799999999997531 125999999999999999999999999999999999999999999999998
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++.. .+....++.+|||||++.+++ .|++||+.+.
T Consensus 77 ~~~~-~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~ 111 (226)
T cd03248 77 PISQ-YEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYG 111 (226)
T ss_pred chHH-cCHHHHHhhEEEEecccHHHh-hhHHHHhccc
Confidence 8742 233456778999999998886 5999999764
No 218
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.1e-18 Score=187.14 Aligned_cols=101 Identities=29% Similarity=0.352 Sum_probs=88.1
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 68 (510)
T PRK09700 4 PYISMAGIGKSFGPV---------------HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68 (510)
T ss_pred ceEEEeeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE
Confidence 368999999999642 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.........++.+||+||++.+++.+||+||+.+.
T Consensus 69 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (510)
T PRK09700 69 YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG 104 (510)
T ss_pred CCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhc
Confidence 853222222456799999999999999999999764
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5.9e-18 Score=169.00 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=89.8
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i 478 (536)
...+.++++++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i 70 (261)
T PRK14263 6 PIVMDCKLDKIFYGNF---------------MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV 70 (261)
T ss_pred CceEEEEeEEEEeCCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE
Confidence 4578999999999642 599999999999999999999999999999999999986 79999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.++|+++... .+....++.+||+||++.++ .+|++||+.+.....+
T Consensus 71 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~ 117 (261)
T PRK14263 71 HFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR 117 (261)
T ss_pred EECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC
Confidence 9999987421 12235677899999999988 5999999988765544
No 220
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=3.4e-18 Score=171.55 Aligned_cols=99 Identities=25% Similarity=0.411 Sum_probs=86.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++.. ..+++|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++
T Consensus 2 ~i~~~nls~~~~~~~-------------~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTEGG-------------NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEh
Confidence 378999999996421 159999999999999999999999999999999999998 789999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. .+....|+.+|||||++.+|+. |++||+..+
T Consensus 68 ~~-~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~ 100 (275)
T cd03289 68 NS-VPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPY 100 (275)
T ss_pred hh-CCHHHHhhhEEEECCCcccchh-hHHHHhhhc
Confidence 52 3455678899999999999975 999999754
No 221
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=4e-19 Score=160.93 Aligned_cols=116 Identities=18% Similarity=0.352 Sum_probs=100.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
++++++||.|+|+.. .+|+++||+.++|+++.++|.+||||||+++||.-+..|++|+|.++|..
T Consensus 5 ~~l~v~dlHK~~G~~---------------eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~gee 69 (256)
T COG4598 5 NALEVEDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEE 69 (256)
T ss_pred cceehhHHHhhcccc---------------hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeE
Confidence 478999999999764 69999999999999999999999999999999999999999999999998
Q ss_pred cCC------------cccHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HHHhcCCChHhHhhhh
Q 009374 485 IRS------------SVSMTNIQKSIGVCPQFNILWDALSGEEHLHL-FANIKGLPLDSIKSVC 535 (536)
Q Consensus 485 i~~------------~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~-~~~lkg~~~~~~~~~v 535 (536)
++. ..+.+.+|.++|+++|+.+||.+||+.||+.- .-..-|+++.+..+.+
T Consensus 70 i~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A 133 (256)
T COG4598 70 IRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA 133 (256)
T ss_pred EEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH
Confidence 741 22345678899999999999999999999754 5567788887765544
No 222
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=4.5e-18 Score=176.86 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=82.4
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
+++ ||+|.|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~-~l~k~~~~~----------------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~ 63 (352)
T PRK11144 2 LEL-NFKQQLGDL----------------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF 63 (352)
T ss_pred eEE-EEEEEeCCE----------------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 556 899999641 23 899999999999999999999999999999999999999999999874
Q ss_pred Ccc---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSV---SMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
... .....++.+||+||+..+++++|++||+.+.
T Consensus 64 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 64 DAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred ccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence 211 1234567899999999999999999999874
No 223
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.75 E-value=1.9e-18 Score=192.08 Aligned_cols=103 Identities=17% Similarity=0.331 Sum_probs=93.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++++|+... ..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||+
T Consensus 469 ~g~I~~~nvsf~y~~~~-------------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 469 QGEIEFENVSFRYGPDD-------------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred CceEEEEEEEEEeCCCC-------------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 34699999999997642 15999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
|+. .-+.+..|+++||+||++.||.. |++||+.+..
T Consensus 536 dl~-~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~ 571 (709)
T COG2274 536 DLN-DIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN 571 (709)
T ss_pred eHH-hcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC
Confidence 996 35788999999999999999987 9999998753
No 224
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.5e-18 Score=167.99 Aligned_cols=98 Identities=23% Similarity=0.422 Sum_probs=85.4
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~--------------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYDPG--------------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeCCC--------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence 3678999999642 14999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
. .+....++.+||+||+..+++ .|++||+.+.
T Consensus 67 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~ 98 (236)
T cd03253 67 E-VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYG 98 (236)
T ss_pred h-CCHHHHHhhEEEECCCChhhc-chHHHHHhhc
Confidence 2 234556778999999999886 6999999775
No 225
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8e-18 Score=167.01 Aligned_cols=104 Identities=24% Similarity=0.396 Sum_probs=87.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~i 480 (536)
.++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.+
T Consensus 3 ~l~~~~v~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 67 (250)
T PRK14266 3 RIEVENLNTYFDDA---------------HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL 67 (250)
T ss_pred EEEEEeEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEE
Confidence 57899999999642 59999999999999999999999999999999999864 48999999
Q ss_pred cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
+|.++... .+....++.+|||||++.+++. |++||+.+.....+
T Consensus 68 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~ 112 (250)
T PRK14266 68 DGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG 112 (250)
T ss_pred CCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC
Confidence 99987421 1344667889999999999985 99999987654444
No 226
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.75 E-value=9.7e-18 Score=172.69 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=93.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALI 480 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i 480 (536)
...++++||+|.|+... +.+.||+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+
T Consensus 10 ~~~L~i~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~ 78 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD-----------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF 78 (330)
T ss_pred CceEEEeCeEEEEecCC-----------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE
Confidence 34689999999996421 1246999999999999999999999999999999999999995 999999
Q ss_pred cCEecCCcc--cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374 481 YGFSIRSSV--SMTNIQ-KSIGVCPQFN--ILWDALSGEEHLHLFANIK-GLPLDS 530 (536)
Q Consensus 481 ~g~~i~~~~--~~~~~~-~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk-g~~~~~ 530 (536)
+|.++.... +.++.| +.+||+||+. .+.+.+|+.+++......+ +.+.++
T Consensus 79 ~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~ 134 (330)
T PRK09473 79 NGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAE 134 (330)
T ss_pred CCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHH
Confidence 999985321 223344 4799999997 7899999999997765443 455444
No 227
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=7.2e-19 Score=169.21 Aligned_cols=127 Identities=28% Similarity=0.365 Sum_probs=99.0
Q ss_pred eEEEeeeEEEcCCCCc-Ccccc-----ccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE
Q 009374 406 AVQIRGLVKTFPGTRK-IGCCC-----KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~-~~~~~-----~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~ 479 (536)
++.++||+|.|.-..+ .|... ..+|++...||+|+||+|++||++|++|+||||||||++||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 5677888888864211 01111 11344456799999999999999999999999999999999999999999999
Q ss_pred EcCEecCCcccHHHhhcceEEE-cCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 480 IYGFSIRSSVSMTNIQKSIGVC-PQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 480 i~g~~i~~~~~~~~~~~~ig~~-pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
++|++.. .+.++.-+++|++ .|.-.||=++.+.|.+..-..++.+|.++-++.
T Consensus 83 V~G~~Pf--~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r 136 (325)
T COG4586 83 VNGKDPF--RRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAER 136 (325)
T ss_pred ecCcCcc--hhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHH
Confidence 9999874 2445555667765 467788888889999999999999987776554
No 228
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.75 E-value=4.6e-18 Score=163.09 Aligned_cols=97 Identities=26% Similarity=0.389 Sum_probs=83.0
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcCEe
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGFS 484 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g~~ 484 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~ 65 (200)
T cd03217 1 LEIKDLHVSVGGK---------------EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65 (200)
T ss_pred CeEEEEEEEeCCE---------------EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEE
Confidence 3688999999642 599999999999999999999999999999999999 57999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLH 518 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~ 518 (536)
+......+..++.+||+||+..+++.+|+++++.
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~ 99 (200)
T cd03217 66 ITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR 99 (200)
T ss_pred CCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence 8532222223556999999999999999999883
No 229
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.74 E-value=6.5e-18 Score=184.18 Aligned_cols=101 Identities=29% Similarity=0.405 Sum_probs=87.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc--CccEEEEcCEe
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFS 484 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i~g~~ 484 (536)
++++|++|.|++. .+++|+||++++||++||+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 2 l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~ 66 (500)
T TIGR02633 2 LEMKGIVKTFGGV---------------KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP 66 (500)
T ss_pred EEEEeEEEEeCCe---------------EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 6899999999642 599999999999999999999999999999999999987 79999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
+......+..++.+||+||++.+++.+|++|++.+...
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 104 (500)
T TIGR02633 67 LKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNE 104 (500)
T ss_pred CCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcc
Confidence 85322222345679999999999999999999987544
No 230
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.74 E-value=4.7e-18 Score=186.60 Aligned_cols=101 Identities=25% Similarity=0.466 Sum_probs=91.0
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++++|++.+ +++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 320 ~i~~~~v~f~y~~~~-------------~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR-------------APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCCCC-------------cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh
Confidence 699999999997531 2589999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.+ .+.++.|+++|||||++.+|+. |++||+.+..
T Consensus 387 ~~-~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~ 420 (529)
T TIGR02857 387 AD-ADADSWRDQIAWVPQHPFLFAG-TIAENIRLAR 420 (529)
T ss_pred hh-CCHHHHHhheEEEcCCCcccCc-CHHHHHhccC
Confidence 63 4567789999999999999975 9999998753
No 231
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=5.6e-18 Score=166.21 Aligned_cols=94 Identities=17% Similarity=0.309 Sum_probs=82.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. . .|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHHL---------------P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECCc---------------c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecC
Confidence 6899999999631 1 2899999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. ...++.+||+||++.+++.+|+.||+.+.
T Consensus 65 ~~---~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 65 TT---PPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred cC---ChhhccEEEEecccccccCCcHHHHHhcc
Confidence 21 12356799999999999999999999764
No 232
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.74 E-value=3.6e-18 Score=189.03 Aligned_cols=112 Identities=26% Similarity=0.360 Sum_probs=95.9
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++.. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|+++|.+
T Consensus 337 ~~i~~~~v~f~y~~~~-------------~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPDQP-------------QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCCCC-------------CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 4699999999997531 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
+++ .+.+..|+.+||+||++.+|+. |++||+.+... ..+.+++.+
T Consensus 404 i~~-~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~i~~ 448 (574)
T PRK11160 404 IAD-YSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP--NASDEALIE 448 (574)
T ss_pred hhh-CCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--ccCHHHHHH
Confidence 863 4567889999999999999986 99999988532 334455443
No 233
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.6e-17 Score=170.93 Aligned_cols=110 Identities=20% Similarity=0.341 Sum_probs=91.6
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
...++++|+++.|.+.. ..+++|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|
T Consensus 78 ~~~i~~~nls~~y~~~~-------------~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I 144 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRT-------------KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144 (329)
T ss_pred CceEEEEeeEEEecCCC-------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 45799999999996421 259999999999999999999999999999999999986 579999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~ 527 (536)
.++|.++... .+...+|+.+|||||++.+++ .|++||+.+.....+..
T Consensus 145 ~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~ 193 (329)
T PRK14257 145 YFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGIN 193 (329)
T ss_pred EECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCC
Confidence 9999998521 123456889999999999885 79999999765554544
No 234
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.2e-17 Score=168.07 Aligned_cols=106 Identities=18% Similarity=0.380 Sum_probs=88.9
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i 478 (536)
...++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|
T Consensus 18 ~~~l~~~nl~~~~~~~---------------~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 18 HSVFEVEGVKVFYGGF---------------LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred CceEEEeeEEEEeCCe---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 3479999999999642 599999999999999999999999999999999999863 68999
Q ss_pred EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.++|.++.. .......++.+||+||+..+++. |+.||+.+....++
T Consensus 83 ~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~ 129 (274)
T PRK14265 83 LYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG 129 (274)
T ss_pred EECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC
Confidence 999998742 11233567889999999998875 99999988655444
No 235
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8.6e-18 Score=166.90 Aligned_cols=104 Identities=18% Similarity=0.331 Sum_probs=86.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEEEEc
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALIY 481 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~i~ 481 (536)
-+++|+++.|++. .+++|+||++.+||+++|+|+||||||||+++|+|+.+ |++|+|.++
T Consensus 6 ~~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 70 (251)
T PRK14244 6 ASVKNLNLWYGSK---------------QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID 70 (251)
T ss_pred EEeeeEEEEECCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEEC
Confidence 4688999999642 59999999999999999999999999999999999986 479999999
Q ss_pred CEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 482 GFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 482 g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
|.++... ......++.+||+||++.+++. |++||+.+....++.
T Consensus 71 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~ 115 (251)
T PRK14244 71 GIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL 115 (251)
T ss_pred CEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC
Confidence 9987421 1223467789999999999886 999999876555543
No 236
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.74 E-value=1.3e-17 Score=166.32 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=84.9
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 5 PLLSVRGLTKLYGPR---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred ceEEEeeeEEEcCCc---------------eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 368999999999642 59999999999999999999999999999999999999999999999987
Q ss_pred -----cCCcccH--HH-hhcceEEEcCCC--CCCCCCCHHHHHHHH
Q 009374 485 -----IRSSVSM--TN-IQKSIGVCPQFN--ILWDALSGEEHLHLF 520 (536)
Q Consensus 485 -----i~~~~~~--~~-~~~~ig~~pQ~~--~l~~~lTv~e~L~~~ 520 (536)
+...... .. .++.+||+||+. .+++.+|+.||+.+.
T Consensus 70 ~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~ 115 (258)
T PRK11701 70 GQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGER 115 (258)
T ss_pred ccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHH
Confidence 6321111 11 356799999997 477889999998754
No 237
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.74 E-value=3.5e-18 Score=193.85 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=96.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++. ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|+++|.|
T Consensus 472 ~~I~~~~vsf~y~~~--------------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGYG--------------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCCC--------------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE
Confidence 359999999999642 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
++. -+.+..|+++|||||++.||+. |++|||.+..+ ...+.+++.+
T Consensus 538 i~~-~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~ 583 (708)
T TIGR01193 538 LKD-IDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWA 583 (708)
T ss_pred HHH-cCHHHHHHheEEEecCceehhH-HHHHHHhccCC-CCCCHHHHHH
Confidence 863 4667889999999999999987 99999998632 2344455443
No 238
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=4.8e-18 Score=177.36 Aligned_cols=100 Identities=26% Similarity=0.430 Sum_probs=91.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..|+++|++..|+.++ ++|+++||+|++||-+|++|+|||||||.+|+|-++.. .+|+|+|||.
T Consensus 349 ~~~I~F~dV~f~y~~k~--------------~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKR--------------KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeCCCC--------------ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCe
Confidence 34699999999998642 59999999999999999999999999999999999999 8999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
|++. .+.+..|+.|||+||+..||++ |+.+|+.+.
T Consensus 414 dik~-~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YG 448 (591)
T KOG0057|consen 414 DIKE-VSLESLRQSIGVVPQDSVLFND-TILYNIKYG 448 (591)
T ss_pred eHhh-hChHHhhhheeEeCCcccccch-hHHHHhhcC
Confidence 9973 5678899999999999999998 999999764
No 239
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.74 E-value=8.1e-18 Score=175.15 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=81.6
Q ss_pred eeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc-
Q 009374 411 GLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV- 489 (536)
Q Consensus 411 ~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~- 489 (536)
||+|.|++. .+ |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++....
T Consensus 4 ~l~~~~~~~----------------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~ 66 (354)
T TIGR02142 4 RFSKRLGDF----------------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK 66 (354)
T ss_pred EEEEEECCE----------------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc
Confidence 789999642 34 899999999999999999999999999999999999999999999884211
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 490 --SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 490 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
.....++.+||+||++.+++.+|++||+.+...
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 123456789999999999999999999987644
No 240
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.1e-18 Score=159.36 Aligned_cols=105 Identities=21% Similarity=0.359 Sum_probs=90.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+|+.+|++.+-.++ ..++++||++++||+.+|+||||||||||++.|+|...|++|++.++|.++
T Consensus 1 mi~a~nls~~~~Gr---------------~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l 65 (259)
T COG4559 1 MIRAENLSYSLAGR---------------RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65 (259)
T ss_pred CeeeeeeEEEeecc---------------eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcCh
Confidence 36788988887664 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
.+ ....+..++-++.||+..|--..||+|-+++...-.+.
T Consensus 66 ~~-~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 66 NS-WPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred hh-CCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 63 34455556789999999888889999999998765533
No 241
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=8.4e-18 Score=167.56 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=87.6
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++++++.|++.. ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.
T Consensus 17 ~~~i~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 83 (257)
T cd03288 17 GGEIKIHDLCVRYENNL-------------KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI 83 (257)
T ss_pred CceEEEEEEEEEeCCCC-------------CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence 45699999999996421 25999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
++.. .+..+.++.+|||||++.+++. |++||+..
T Consensus 84 ~i~~-~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~ 117 (257)
T cd03288 84 DISK-LPLHTLRSRLSIILQDPILFSG-SIRFNLDP 117 (257)
T ss_pred Ehhh-CCHHHHhhhEEEECCCCccccc-HHHHhcCc
Confidence 8852 2345667889999999998874 99999854
No 242
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=162.18 Aligned_cols=95 Identities=23% Similarity=0.398 Sum_probs=81.4
Q ss_pred eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc
Q 009374 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV 489 (536)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~ 489 (536)
-+|+|+|++. .+ |+||++++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus 4 ~~l~~~~~~~---------------~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 65 (214)
T cd03297 4 VDIEKRLPDF---------------TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR 65 (214)
T ss_pred eeeeEecCCe---------------ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence 3899999652 24 99999999 999999999999999999999999999999999999874211
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 490 ---SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 490 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
+....++.+||+||+..+++++|++||+.+...
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 66 KKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred chhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 223457789999999999999999999987653
No 243
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.74 E-value=4.9e-18 Score=192.74 Aligned_cols=112 Identities=18% Similarity=0.304 Sum_probs=95.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++++|++.. ..+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.|
T Consensus 476 ~~I~~~~vsf~y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSPLE-------------PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCCCC-------------CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 3699999999997531 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
++. -+.+++|+++|||||++.+|+. |++|||.++. ...+.+++.+
T Consensus 543 i~~-~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~--~~~~~~~i~~ 587 (710)
T TIGR03796 543 REE-IPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD--PTIPDADLVR 587 (710)
T ss_pred HHH-CCHHHHHhheeEEecCChhhhc-cHHHHhhCCC--CCCCHHHHHH
Confidence 863 4567889999999999999975 9999998752 1234454443
No 244
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.1e-17 Score=186.42 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=94.0
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.++++||++.|++.. +...+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~~l~v~~l~~~y~~~~-----------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~ 78 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ-----------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78 (623)
T ss_pred CceEEEeceEEEecCCC-----------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCE
Confidence 45799999999996421 1236999999999999999999999999999999999999999999999987
Q ss_pred ecCC----------cc--cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChHhHh
Q 009374 484 SIRS----------SV--SMTNIQ-KSIGVCPQFN--ILWDALSGEEHLHLFANIK-GLPLDSIK 532 (536)
Q Consensus 484 ~i~~----------~~--~~~~~~-~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk-g~~~~~~~ 532 (536)
++.. .. +....| +.+||++|++ .+++.+||+||+.+..+++ |++.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 143 (623)
T PRK10261 79 LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM 143 (623)
T ss_pred EeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH
Confidence 5421 01 112333 4799999997 7889999999999876653 66655443
No 245
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.74 E-value=1.7e-17 Score=166.44 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=87.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++....| ++.++.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~~~nl~~~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~ 76 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSG------KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76 (268)
T ss_pred eEEEeceEEEecCCcccc------ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 588999999996310000 00013699999999999999999999999999999999999999999999999987
Q ss_pred CCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHH
Q 009374 486 RSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFA 521 (536)
Q Consensus 486 ~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~ 521 (536)
.... +....++.+||+||++ .+++.+|+.|++.+..
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~ 116 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL 116 (268)
T ss_pred cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH
Confidence 4321 1234577899999997 4778899999987643
No 246
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.5e-18 Score=157.32 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=86.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
..+.++||++.+||.+-+.||||||||||+|+|+|+.+|++|+|+++|..+. ..+++.++.+-|.--.+.+=.+|||+
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~--~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ--NVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCc--cchhhHHHHHHHhhccccccchhhHH
Confidence 6899999999999999999999999999999999999999999999999984 45566778888998999999999999
Q ss_pred HHHHHHHHhcCC-ChHhHhh
Q 009374 515 EHLHLFANIKGL-PLDSIKS 533 (536)
Q Consensus 515 e~L~~~~~lkg~-~~~~~~~ 533 (536)
|||.||.++.|- +.+.+.+
T Consensus 94 ENL~F~~~~~~~~~~~~i~~ 113 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWE 113 (209)
T ss_pred HHHHHHHHHhCCCchhhHHH
Confidence 999999999883 4444443
No 247
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.8e-17 Score=169.25 Aligned_cols=103 Identities=23% Similarity=0.410 Sum_probs=88.4
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i 478 (536)
+..++++|+++.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 43 ~~~l~i~nl~~~~~~~---------------~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I 107 (305)
T PRK14264 43 DAKLSVEDLDVYYGDD---------------HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV 107 (305)
T ss_pred CceEEEEEEEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 4579999999999642 59999999999999999999999999999999999986 689999
Q ss_pred EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
.++|.++... .+....++.+||+||+..+++ .|++||+.+...
T Consensus 108 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~ 151 (305)
T PRK14264 108 ELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPR 151 (305)
T ss_pred EECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHh
Confidence 9999987421 123456788999999998887 599999987543
No 248
>PLN03211 ABC transporter G-25; Provisional
Probab=99.74 E-value=6.2e-18 Score=188.73 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=77.9
Q ss_pred cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC--ccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCC
Q 009374 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDAL 511 (536)
Q Consensus 434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt--~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~l 511 (536)
+.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++. ++.++++||++|++.+++.+
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~-----~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT-----KQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc-----hhhccceEEECcccccCCcC
Confidence 46999999999999999999999999999999999999885 899999999873 13456799999999999999
Q ss_pred CHHHHHHHHHHhc
Q 009374 512 SGEEHLHLFANIK 524 (536)
Q Consensus 512 Tv~e~L~~~~~lk 524 (536)
||+|+|.+.+.++
T Consensus 156 TV~E~l~~~a~~~ 168 (659)
T PLN03211 156 TVRETLVFCSLLR 168 (659)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999987665
No 249
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.74 E-value=7.2e-18 Score=187.56 Aligned_cols=110 Identities=16% Similarity=0.290 Sum_probs=96.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++..|+++ ..+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 340 ~i~~~~v~f~y~~~--------------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYRDD--------------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeCCC--------------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh
Confidence 59999999999642 1599999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
. ..+.+..|+++||+||++.+|+. |++|||.++. ..+.+++.+.
T Consensus 406 ~-~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~i~~a 449 (592)
T PRK10790 406 S-SLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR---DISEEQVWQA 449 (592)
T ss_pred h-hCCHHHHHhheEEEccCCccccc-hHHHHHHhCC---CCCHHHHHHH
Confidence 6 34677889999999999999998 9999999874 3445555443
No 250
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.73 E-value=6.9e-18 Score=183.55 Aligned_cols=97 Identities=28% Similarity=0.410 Sum_probs=84.8
Q ss_pred EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (536)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~ 488 (536)
++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 1 ~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 65 (491)
T PRK10982 1 MSNISKSFPGV---------------KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFK 65 (491)
T ss_pred CCceEEEeCCE---------------EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCC
Confidence 36889999642 599999999999999999999999999999999999999999999999998532
Q ss_pred ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 489 ~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
...+..++.+||+||+..+++.+||+||+.+.
T Consensus 66 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 97 (491)
T PRK10982 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLG 97 (491)
T ss_pred CHHHHHhCCEEEEecccccccCCCHHHHhhcc
Confidence 22344567899999999999999999999874
No 251
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=3.4e-18 Score=152.29 Aligned_cols=115 Identities=23% Similarity=0.381 Sum_probs=100.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+|+++++++.|+.. .++-|++|+.++||.+.||||+|||||||+|.|.-+.-|.+|+..|.|...
T Consensus 2 sirv~~in~~yg~~---------------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFYGAH---------------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred ceEEcccccccccc---------------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccc
Confidence 58999999999764 699999999999999999999999999999999999999999999988643
Q ss_pred C-----CcccHHHhhcceEEEcCCCCCCCCCCHHHHHH-HHHHhcCCChHhHhhhh
Q 009374 486 R-----SSVSMTNIQKSIGVCPQFNILWDALSGEEHLH-LFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~-----~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~-~~~~lkg~~~~~~~~~v 535 (536)
+ ......+.|+++|+++|...|||+|||.|||. -.++..|+++++...++
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a 122 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHH
Confidence 2 12345678999999999999999999999984 47899999988776543
No 252
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.73 E-value=8e-18 Score=190.60 Aligned_cols=113 Identities=20% Similarity=0.384 Sum_probs=95.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++++ ++.+++|+||++++||.++|+|||||||||++++|.|+++|++|+|.++|.+
T Consensus 477 ~~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 3599999999997531 1259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
+.+ .+.+..|+++|||||++.+|+. |++|||.+... ..+.+++.+
T Consensus 545 i~~-~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~~e~i~~ 589 (711)
T TIGR00958 545 LVQ-YDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT--DTPDEEIMA 589 (711)
T ss_pred HHh-cCHHHHHhhceEEecCcccccc-CHHHHHhcCCC--CCCHHHHHH
Confidence 863 4567889999999999999975 99999987531 234444443
No 253
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.73 E-value=1.3e-17 Score=155.09 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=80.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++++.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~--------------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATPDG--------------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcCCC--------------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---
Confidence 3678999999532 15999999999999999999999999999999999999999999998762
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
+.+||+||++.++ .+|++||+.+. ..+.++..+
T Consensus 64 ---------~~i~~~~q~~~~~-~~tv~~nl~~~-~~~~LS~G~ 96 (166)
T cd03223 64 ---------EDLLFLPQRPYLP-LGTLREQLIYP-WDDVLSGGE 96 (166)
T ss_pred ---------ceEEEECCCCccc-cccHHHHhhcc-CCCCCCHHH
Confidence 5699999998765 67999999763 234444443
No 254
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.73 E-value=1.1e-17 Score=186.00 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=94.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++..|.+. ..+++|+||++++||.++|+|+|||||||++++|+|++ |++|+|.++|.|+
T Consensus 349 ~i~~~~vsf~~~~~--------------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSPDG--------------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEeccCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEec
Confidence 59999999766432 15899999999999999999999999999999999999 9999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
++ -+.+.+|+++|||||++.||+. |++||+.+.. ...+.+++.+.
T Consensus 414 ~~-~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~~eei~~a 458 (588)
T PRK11174 414 RE-LDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN--PDASDEQLQQA 458 (588)
T ss_pred cc-CCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC--CCCCHHHHHHH
Confidence 63 4667889999999999999987 9999998863 23556665544
No 255
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.1e-17 Score=184.29 Aligned_cols=118 Identities=22% Similarity=0.301 Sum_probs=93.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.++++||+|.|+..... ..++.+.+.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus 312 ~~L~~~~l~~~y~~~~~~----~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 387 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGL----LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387 (623)
T ss_pred ceEEEeeeEEEEcCCCcc----ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 479999999999632000 0000112369999999999999999999999999999999999999999999999998
Q ss_pred cCCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCC
Q 009374 485 IRSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 485 i~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+.... +.+..++.+||+||++ .+++.+|+.|++.+....++.
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~ 433 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGL 433 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCC
Confidence 85321 1234567899999996 689999999999886655554
No 256
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=1.4e-15 Score=172.94 Aligned_cols=105 Identities=25% Similarity=0.291 Sum_probs=88.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--cCccEEEEcC
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYG 482 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--pt~G~i~i~g 482 (536)
....++|+.+.-+.+. +.++.|+||+=-++||-.+||+|+|||||||||++|+|... ..+|+|.|+|
T Consensus 786 ~V~~w~dl~~~~~~qG-----------~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G 854 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG-----------GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISG 854 (1391)
T ss_pred ceEEEEeCCccccccc-----------cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECC
Confidence 3566777766654321 23379999999999999999999999999999999999853 4679999999
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
++.. .+..+|.+|||-|+|.-.+++||||-|++-|.+|
T Consensus 855 ~p~~----q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LR 892 (1391)
T KOG0065|consen 855 FPKD----QETFARVSGYVEQQDIHSPELTVRESLRFSAALR 892 (1391)
T ss_pred eeCc----hhhhccccceeecccccCcccchHHHHHHHHHHc
Confidence 9863 2567889999999999999999999999999988
No 257
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.73 E-value=1.9e-17 Score=164.49 Aligned_cols=101 Identities=27% Similarity=0.374 Sum_probs=86.3
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcC
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYG 482 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g 482 (536)
..++++++++.|++. .+++|+||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|
T Consensus 6 ~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g 70 (252)
T CHL00131 6 PILEIKNLHASVNEN---------------EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG 70 (252)
T ss_pred ceEEEEeEEEEeCCE---------------EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECC
Confidence 369999999999642 599999999999999999999999999999999998 579999999999
Q ss_pred EecCCcccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 483 FSIRSSVSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 483 ~~i~~~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.++... +....+ ..++++||++.+++.+|++|++.+..
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~ 109 (252)
T CHL00131 71 ESILDL-EPEERAHLGIFLAFQYPIEIPGVSNADFLRLAY 109 (252)
T ss_pred EEcccC-ChhhhheeeEEEEeccccccccccHHHHHHHhh
Confidence 988532 222222 25899999999999999999998754
No 258
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.73 E-value=8.6e-18 Score=186.64 Aligned_cols=100 Identities=20% Similarity=0.425 Sum_probs=90.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++.. ..+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 341 ~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPGKE-------------VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCCCC-------------CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence 599999999997531 2599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. .+.+..|+.+||+||++.+|+. |++|||.+.
T Consensus 408 ~~-~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~ 440 (582)
T PRK11176 408 RD-YTLASLRNQVALVSQNVHLFND-TIANNIAYA 440 (582)
T ss_pred hh-cCHHHHHhhceEEccCceeecc-hHHHHHhcC
Confidence 53 4567789999999999999985 999999875
No 259
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=1.3e-17 Score=162.02 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=83.1
Q ss_pred EEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (536)
Q Consensus 408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~ 487 (536)
.+.++.+.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 2 ~~~~~~~~~~~~--------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 67 (218)
T cd03290 2 QVTNGYFSWGSG--------------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESE 67 (218)
T ss_pred eeeeeEEecCCC--------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccc
Confidence 567888999643 159999999999999999999999999999999999999999999999987742
Q ss_pred cc---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 488 SV---SMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 488 ~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.. .....|+.+||++|++.++ +.|++||+.+..
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~ 103 (218)
T cd03290 68 PSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGS 103 (218)
T ss_pred ccccccchhhcceEEEEcCCCccc-cccHHHHHhhcC
Confidence 11 1123457799999999888 579999998753
No 260
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-17 Score=177.14 Aligned_cols=111 Identities=25% Similarity=0.360 Sum_probs=95.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++.+|+++.|++++ ++++|+||++++|+.++|+|+|||||||++++|.|+.+|++|+|.+||.+.
T Consensus 320 ei~~~~l~~~y~~g~--------------~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 320 EISLENLSFRYPDGK--------------PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred eeeecceEEecCCCC--------------cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 455669999997642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
++ -+.+.+|++++++||++.+|+. |++||+.++..- .+++++.+.
T Consensus 386 ~~-l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~--~s~e~i~~a 430 (559)
T COG4988 386 RD-LSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD--ASDEEIIAA 430 (559)
T ss_pred cc-cCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc--CCHHHHHHH
Confidence 64 4567899999999999999987 999999887432 345555544
No 261
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=1.1e-17 Score=160.76 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=77.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++||+|.|+++. ...+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~----------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---- 66 (204)
T cd03250 1 ISVEDASFTWDSGE----------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---- 66 (204)
T ss_pred CEEeEEEEecCCCC----------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----
Confidence 46899999996531 0002599999999999999999999999999999999999999999999987
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++||+||++.++ .+|++||+.+.
T Consensus 67 ----------~i~~~~q~~~l~-~~t~~enl~~~ 89 (204)
T cd03250 67 ----------SIAYVSQEPWIQ-NGTIRENILFG 89 (204)
T ss_pred ----------EEEEEecCchhc-cCcHHHHhccC
Confidence 499999999988 56999999875
No 262
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.72 E-value=1e-17 Score=189.55 Aligned_cols=112 Identities=23% Similarity=0.380 Sum_probs=95.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++++|++.. ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.|
T Consensus 462 ~~I~~~~vsf~Y~~~~-------------~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQE-------------TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCCCC-------------ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 3699999999997531 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
++. .+.+..|+.+|||||++.+|+. |++|||.+... ..+.+++.+
T Consensus 529 l~~-~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~~ 573 (694)
T TIGR03375 529 IRQ-IDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP--YADDEEILR 573 (694)
T ss_pred hhh-CCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--CCCHHHHHH
Confidence 863 4567889999999999999986 99999987532 234454443
No 263
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.72 E-value=2.9e-17 Score=163.37 Aligned_cols=103 Identities=19% Similarity=0.299 Sum_probs=86.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc----CccEEEEc
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIY 481 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p----t~G~i~i~ 481 (536)
.++++|++|.| +. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++
T Consensus 4 ~l~~~~l~~~~-~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~ 67 (254)
T PRK10418 4 QIELRNIALQA-AQ---------------PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLD 67 (254)
T ss_pred EEEEeCeEEEe-cc---------------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEEC
Confidence 68999999999 32 589999999999999999999999999999999999999 99999999
Q ss_pred CEecCCcccHHHhhcceEEEcCCCC--CCCCCCHHHHHHHHHHhcCCC
Q 009374 482 GFSIRSSVSMTNIQKSIGVCPQFNI--LWDALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 482 g~~i~~~~~~~~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~~~lkg~~ 527 (536)
|.++.. .+..++.+||+||++. +.+.+|+.+++....+..|..
T Consensus 68 g~~i~~---~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (254)
T PRK10418 68 GKPVAP---CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP 112 (254)
T ss_pred Ceeccc---cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCC
Confidence 998842 1223467999999974 556789999987765555543
No 264
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.72 E-value=1.8e-17 Score=182.47 Aligned_cols=102 Identities=23% Similarity=0.416 Sum_probs=90.8
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++.. ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 315 ~~i~~~~v~~~y~~~~-------------~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPGGK-------------KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 3599999999996431 258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+.. .+.+..|+.+|||||++.+|+. |++||+.++.
T Consensus 382 i~~-~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~ 416 (544)
T TIGR01842 382 LKQ-WDRETFGKHIGYLPQDVELFPG-TVAENIARFG 416 (544)
T ss_pred hhh-CCHHHHhhheEEecCCcccccc-cHHHHHhccC
Confidence 863 3556788999999999999987 9999998643
No 265
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.6e-17 Score=168.75 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=85.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc----cCccEEEEc
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIY 481 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~----pt~G~i~i~ 481 (536)
.++++||+|.|+... +.+.|++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++
T Consensus 3 ~L~v~~l~~~y~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~ 71 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-----------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFD 71 (330)
T ss_pred eEEEeeeEEEEeCCC-----------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEEC
Confidence 589999999996421 12369999999999999999999999999999999999986 589999999
Q ss_pred CEecCCccc--HHHh-hcceEEEcCCCC--CCCCCCHHHHHHHH
Q 009374 482 GFSIRSSVS--MTNI-QKSIGVCPQFNI--LWDALSGEEHLHLF 520 (536)
Q Consensus 482 g~~i~~~~~--~~~~-~~~ig~~pQ~~~--l~~~lTv~e~L~~~ 520 (536)
|.++..... .... ++.+||+||++. +.+.+|+.|++...
T Consensus 72 g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~ 115 (330)
T PRK15093 72 DIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN 115 (330)
T ss_pred CEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH
Confidence 999853221 1222 357999999975 78899999999763
No 266
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=3.6e-18 Score=153.24 Aligned_cols=90 Identities=18% Similarity=0.382 Sum_probs=84.1
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
++|+++||.+++||..+|.||+||||||++++++-+.+||+|++++.|+++.. .+.+..|+.+.||-|.+.||++ ||+
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~-~~pea~Rq~VsY~~Q~paLfg~-tVe 94 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST-LKPEAYRQQVSYCAQTPALFGD-TVE 94 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccc-cChHHHHHHHHHHHcCcccccc-chh
Confidence 69999999999999999999999999999999999999999999999999963 5678899999999999999998 999
Q ss_pred HHHHHHHHhcCC
Q 009374 515 EHLHLFANIKGL 526 (536)
Q Consensus 515 e~L~~~~~lkg~ 526 (536)
+||.|.-+++.-
T Consensus 95 DNlifP~~~r~r 106 (223)
T COG4619 95 DNLIFPWQIRNR 106 (223)
T ss_pred hccccchHHhcc
Confidence 999998877643
No 267
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.71 E-value=3.3e-17 Score=162.87 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=82.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe-
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS- 484 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~- 484 (536)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---------------KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeCCc---------------eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccc
Confidence 68999999999642 58999999999999999999999999999999999999999999999976
Q ss_pred ----cCCcccH--H-HhhcceEEEcCCCC--CCCCCCHHHHHHHH
Q 009374 485 ----IRSSVSM--T-NIQKSIGVCPQFNI--LWDALSGEEHLHLF 520 (536)
Q Consensus 485 ----i~~~~~~--~-~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~ 520 (536)
+...... . ..++.+||+||++. +.+.+|+.|++...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~ 112 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGER 112 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHH
Confidence 5321111 1 13467999999974 56678999998653
No 268
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.71 E-value=2.6e-17 Score=180.31 Aligned_cols=110 Identities=21% Similarity=0.322 Sum_probs=87.9
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEc---
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIY--- 481 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~--- 481 (536)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~ 65 (520)
T TIGR03269 1 IEVKNLTKKFDGK---------------EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVAL 65 (520)
T ss_pred CEEEEEEEEECCe---------------EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccc
Confidence 4689999999542 5999999999999999999999999999999999997 7999999997
Q ss_pred --------------------CEecC-------C--cccHHHhhcceEEEcCC-CCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 482 --------------------GFSIR-------S--SVSMTNIQKSIGVCPQF-NILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 482 --------------------g~~i~-------~--~~~~~~~~~~ig~~pQ~-~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
|.++. . .......|+.+||+||+ +.+++.+|++||+.+....+|.+.++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 145 (520)
T TIGR03269 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEA 145 (520)
T ss_pred cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 32221 0 00112356789999997 789999999999988666666655443
No 269
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.71 E-value=3.2e-17 Score=162.40 Aligned_cols=98 Identities=22% Similarity=0.356 Sum_probs=82.3
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCEe
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGFS 484 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~~ 484 (536)
++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+. +|++|+|.++|.+
T Consensus 2 i~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 66 (248)
T PRK09580 2 LSIKDLHVSVEDK---------------AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 66 (248)
T ss_pred eEEEEEEEEeCCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCc
Confidence 6899999999642 5999999999999999999999999999999999995 6999999999988
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
+.........++.+||++|++.+++.+|+.+++..
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 101 (248)
T PRK09580 67 LLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 101 (248)
T ss_pred cccCCHHHHhhcceEEEecCchhccchhHHHHHHH
Confidence 74321122234679999999999998887777654
No 270
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.71 E-value=5.6e-17 Score=177.66 Aligned_cols=109 Identities=18% Similarity=0.296 Sum_probs=87.4
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc-C
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY-G 482 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~-g 482 (536)
...++++|++|.|++.. .+.+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++ |
T Consensus 277 ~~~l~~~~l~~~~~~~~----------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g 346 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD----------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVG 346 (520)
T ss_pred CceEEEeccEEEeccCC----------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecC
Confidence 34799999999996310 011259999999999999999999999999999999999999999999996 6
Q ss_pred Ee---cCCcc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 483 FS---IRSSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 483 ~~---i~~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
.+ +.... +....++++||+||++.+++.+|++||+.+...
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 391 (520)
T TIGR03269 347 DEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG 391 (520)
T ss_pred CccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH
Confidence 42 22111 122346679999999999999999999987543
No 271
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.71 E-value=3.7e-17 Score=151.66 Aligned_cols=88 Identities=30% Similarity=0.518 Sum_probs=74.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. ++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence 3688999999642 5999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEH 516 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~ 516 (536)
.....+..++.+||+|| |+..|.
T Consensus 66 ~~~~~~~~~~~i~~~~q-------LS~G~~ 88 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-------LSVGER 88 (163)
T ss_pred cCCHHHHHhcCeEEEEe-------cCHHHH
Confidence 32222345678999999 666554
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.8e-17 Score=179.61 Aligned_cols=99 Identities=15% Similarity=0.371 Sum_probs=85.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|+ .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 264 ~~l~~~~l~~~~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 326 (510)
T PRK09700 264 TVFEVRNVTSRDR-----------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD 326 (510)
T ss_pred cEEEEeCccccCC-----------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence 4699999998652 38999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCC---CCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQF---NILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~---~~l~~~lTv~e~L~~~ 520 (536)
+......+..++.+||+||+ ..+++++|++||+.+.
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred CCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence 84322223456789999998 5789999999999874
No 273
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.70 E-value=3.9e-17 Score=181.53 Aligned_cols=110 Identities=24% Similarity=0.362 Sum_probs=94.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++++ .+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 333 ~~I~~~~vsf~y~~~~--------------~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDNSR--------------QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCCCC--------------ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 3599999999996421 48999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIK 532 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~ 532 (536)
+.+ .+.+..|++++|+||++.+|+. |++||+.+.. ...+.+++.
T Consensus 399 i~~-~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~d~~i~ 442 (588)
T PRK13657 399 IRT-VTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR--PDATDEEMR 442 (588)
T ss_pred hhh-CCHHHHHhheEEEecCcccccc-cHHHHHhcCC--CCCCHHHHH
Confidence 863 4567889999999999999976 9999998752 223444443
No 274
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.70 E-value=3.1e-17 Score=181.45 Aligned_cols=100 Identities=19% Similarity=0.316 Sum_probs=89.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+++++++++|++.. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++
T Consensus 313 ~I~~~~v~~~y~~~~-------------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQTD-------------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCCCC-------------CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEH
Confidence 589999999997531 2589999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. .+.+..|+.+|||||++.+|+. |++||+.+.
T Consensus 380 ~~-~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~ 412 (569)
T PRK10789 380 TK-LQLDSWRSRLAVVSQTPFLFSD-TVANNIALG 412 (569)
T ss_pred hh-CCHHHHHhheEEEccCCeeccc-cHHHHHhcC
Confidence 63 3567789999999999999986 999999875
No 275
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.70 E-value=3e-17 Score=182.04 Aligned_cols=102 Identities=23% Similarity=0.387 Sum_probs=90.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++..|++.. +..+++|+||++++||.++++|+||||||||+++|+|+++|++|+|+++|.+
T Consensus 336 ~~i~~~~v~f~y~~~~------------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP------------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCCCC------------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 3599999999997531 1258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.+ .+.+.+|+.+|||||++.+|+. |++|||.+.
T Consensus 404 i~~-~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~ 437 (576)
T TIGR02204 404 LRQ-LDPAELRARMALVPQDPVLFAA-SVMENIRYG 437 (576)
T ss_pred HHh-cCHHHHHHhceEEccCCccccc-cHHHHHhcC
Confidence 863 4567788999999999999976 999999774
No 276
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.70 E-value=3.6e-17 Score=182.28 Aligned_cols=88 Identities=25% Similarity=0.385 Sum_probs=80.4
Q ss_pred CcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCC
Q 009374 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD 509 (536)
Q Consensus 433 ~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~ 509 (536)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|.++. ....++.+|||||+|.+++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~----~~~~~~~i~yv~Q~~~~~~ 112 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID----AKEMRAISAYVQQDDLFIP 112 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----HHHHhhhceeeccccccCc
Confidence 457999999999999999999999999999999999999885 799999999873 2456788999999999999
Q ss_pred CCCHHHHHHHHHHhc
Q 009374 510 ALSGEEHLHLFANIK 524 (536)
Q Consensus 510 ~lTv~e~L~~~~~lk 524 (536)
.+||+|||.+.++++
T Consensus 113 ~lTV~e~l~f~~~~~ 127 (617)
T TIGR00955 113 TLTVREHLMFQAHLR 127 (617)
T ss_pred cCcHHHHHHHHHhcC
Confidence 999999999988876
No 277
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.70 E-value=3.3e-17 Score=185.47 Aligned_cols=101 Identities=20% Similarity=0.354 Sum_probs=90.9
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++++|++.. ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|+++|.+
T Consensus 454 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAPDS-------------PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 3699999999996431 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++. .+.+..|+.+|||||++.+|+. |++|||.+.
T Consensus 521 i~~-~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~ 554 (694)
T TIGR01846 521 LAI-ADPAWLRRQMGVVLQENVLFSR-SIRDNIALC 554 (694)
T ss_pred hhh-CCHHHHHHhCeEEccCCeehhh-hHHHHHhcC
Confidence 863 4567889999999999999975 999999874
No 278
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.70 E-value=3.4e-17 Score=178.51 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=87.4
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-CccEEEEcCE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGF 483 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~i~g~ 483 (536)
..++++|+++.|++.. ...+++|+||++++||++||+|+||||||||+++|+|+.+| ++|+|.++|.
T Consensus 256 ~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~ 323 (500)
T TIGR02633 256 VILEARNLTCWDVINP------------HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGK 323 (500)
T ss_pred ceEEEeCCcccccccc------------cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCE
Confidence 3689999999984310 11589999999999999999999999999999999999985 8999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCC---CCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFN---ILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~L~~~ 520 (536)
++.........++++||+||+. .+++.+|++|++.+.
T Consensus 324 ~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~ 363 (500)
T TIGR02633 324 PVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363 (500)
T ss_pred ECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcch
Confidence 8843222345677899999995 589999999999774
No 279
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.70 E-value=5.9e-17 Score=179.71 Aligned_cols=99 Identities=30% Similarity=0.386 Sum_probs=89.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++.+ .+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++
T Consensus 334 ~i~~~~v~~~y~~~~--------------~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFANSS--------------QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCCCC--------------ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 599999999997531 489999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.+ .+.+..|+.+||+||++.+++ .|++||+.+.
T Consensus 400 ~~-~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~ 432 (585)
T TIGR01192 400 NT-VTRESLRKSIATVFQDAGLFN-RSIRENIRLG 432 (585)
T ss_pred hh-CCHHHHHhheEEEccCCccCc-ccHHHHHhcC
Confidence 63 345678899999999999997 5999999875
No 280
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.70 E-value=5.1e-17 Score=159.21 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=75.0
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc----CccEEEEcCEecCCcccHHHhhcceEEEcCCCC--CCC
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI--LWD 509 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p----t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~--l~~ 509 (536)
+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. .+..++.+||+||++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~---~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP---LSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh---hhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999999 89999999998842 2223467999999974 667
Q ss_pred CCCHHHHHHHHHHhcCC
Q 009374 510 ALSGEEHLHLFANIKGL 526 (536)
Q Consensus 510 ~lTv~e~L~~~~~lkg~ 526 (536)
.+|++|++.+.....+.
T Consensus 78 ~~t~~~~~~~~~~~~~~ 94 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGK 94 (230)
T ss_pred ccCHHHHHHHHHHHcCc
Confidence 89999999876655544
No 281
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.70 E-value=1.7e-17 Score=150.94 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=82.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
+.+++++..|+.. =-..+++|+.||+++++||+|||||||+|+++|...|.+|+|.|+|.|..
T Consensus 2 l~L~~V~~~y~~~-----------------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGHL-----------------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCcc-----------------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC
Confidence 5678888999642 33578999999999999999999999999999999999999999999974
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
. ....+|-+.+++|+++||.+|||++|+.+.
T Consensus 65 ~---~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 65 A---SPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred c---CCcccCChhhhhhccccchhhhhhhhhccc
Confidence 2 234566799999999999999999999874
No 282
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.70 E-value=3.7e-17 Score=181.15 Aligned_cols=112 Identities=16% Similarity=0.333 Sum_probs=95.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++++|++.. ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 330 ~i~~~~v~f~y~~~~-------------~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD-------------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCCCC-------------CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 599999999996531 1589999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
.. .+.++.|++++||||++.+|+. |++|||.++. -+..+.+++.+
T Consensus 397 ~~-~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-~~~~~~~~i~~ 441 (571)
T TIGR02203 397 AD-YTLASLRRQVALVSQDVVLFND-TIANNIAYGR-TEQADRAEIER 441 (571)
T ss_pred Hh-cCHHHHHhhceEEccCcccccc-cHHHHHhcCC-CCCCCHHHHHH
Confidence 53 4567789999999999999977 9999998764 11344444443
No 283
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.69 E-value=7.2e-17 Score=160.20 Aligned_cols=87 Identities=26% Similarity=0.416 Sum_probs=77.0
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--- 65 (251)
T PRK09544 4 LVSLENVSVSFGQR---------------RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--- 65 (251)
T ss_pred EEEEeceEEEECCc---------------eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---
Confidence 68999999999642 599999999999999999999999999999999999999999999876
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCC--CHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDAL--SGEEHLHL 519 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~l--Tv~e~L~~ 519 (536)
++.+||+||+..+++.+ |++|++.+
T Consensus 66 ---------~~~i~~v~q~~~~~~~l~~~~~~~~~~ 92 (251)
T PRK09544 66 ---------KLRIGYVPQKLYLDTTLPLTVNRFLRL 92 (251)
T ss_pred ---------ccCEEEeccccccccccChhHHHHHhc
Confidence 23599999998887764 78887654
No 284
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.69 E-value=4.3e-17 Score=161.60 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=74.4
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
+++|+||++++||+++|+|+||||||||+++|+|+.++ +|+|.++|.++.. .+....++.+||+||++.+++.+|++|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~-~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEA-WSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCc-CCHHHHhhheEEecccCccCCCccHHH
Confidence 79999999999999999999999999999999999864 8999999998852 233455667999999998888999999
Q ss_pred HHHHHH
Q 009374 516 HLHLFA 521 (536)
Q Consensus 516 ~L~~~~ 521 (536)
|+.+..
T Consensus 89 nl~~~~ 94 (248)
T PRK03695 89 YLTLHQ 94 (248)
T ss_pred HHHhcC
Confidence 998864
No 285
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.69 E-value=3.9e-17 Score=180.74 Aligned_cols=113 Identities=25% Similarity=0.415 Sum_probs=98.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++..|+++ .++++|+||++++||.+|++|||||||||+++.|.|+++|++|+|.+||.|
T Consensus 327 ~~I~f~~vsf~y~~~--------------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPGK--------------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCCC--------------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence 349999999999742 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
+++ -+.+..|+++|++||++.||. -|++||+.+...- .+.+++.+.+
T Consensus 393 I~~-i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~ 439 (567)
T COG1132 393 IRD-ISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEAL 439 (567)
T ss_pred hhh-cCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHH
Confidence 974 567889999999999999999 5999999887432 3455555443
No 286
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.69 E-value=1.6e-16 Score=177.98 Aligned_cols=114 Identities=18% Similarity=0.358 Sum_probs=94.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++.+ +.+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++
T Consensus 4 ~l~~~nl~~~y~~~~-----------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSGE-----------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCCC-----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 689999999996421 112599999999999999999999999999999999999999999999999998
Q ss_pred CCccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 486 RSSVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 486 ~~~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
..... ..+. ++.+||+||+..+++++|+.||+.+.....|.+.++
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 120 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ 120 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 53211 1122 568999999999999999999999876666655443
No 287
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.69 E-value=3.3e-17 Score=147.00 Aligned_cols=79 Identities=30% Similarity=0.603 Sum_probs=73.8
Q ss_pred eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH 516 (536)
Q Consensus 437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~ 516 (536)
|+|+|+++++||+++|+|+||||||||+++|+|..+|++|+|.++|.++.. .+....++.++|+||++.+++.+|++|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD-IDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT-SHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999999963 3456778899999999999999999998
No 288
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.3e-17 Score=170.78 Aligned_cols=100 Identities=23% Similarity=0.389 Sum_probs=90.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...|+.+|+++.|..+ +++++|+||++++|+.++|+||+||||||+||+|-++...++|.|.|+|+
T Consensus 535 ~G~i~fsnvtF~Y~p~--------------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq 600 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG--------------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ 600 (790)
T ss_pred CCeEEEEEeEEecCCC--------------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc
Confidence 4469999999999754 26999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
||+. ..+...|++||++||+..||.+ |+..|+++
T Consensus 601 dIrn-vt~~SLRs~IGVVPQDtvLFNd-TI~yNIry 634 (790)
T KOG0056|consen 601 DIRN-VTQSSLRSSIGVVPQDTVLFND-TILYNIRY 634 (790)
T ss_pred hHHH-HHHHHHHHhcCcccCcceeecc-eeeeheee
Confidence 9973 4567889999999999999987 78877764
No 289
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.69 E-value=7.2e-17 Score=162.23 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=80.0
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|+++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWRNG--------------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEecCC--------------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh
Confidence 58999999999632 1599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhcceEEEcCCCCCC--CCCCHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILW--DALSGEEHLHL 519 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~--~~lTv~e~L~~ 519 (536)
.. ...++.+||+||++.+. ...+++|++.+
T Consensus 72 ~~----~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~ 103 (272)
T PRK15056 72 RQ----ALQKNLVAYVPQSEEVDWSFPVLVEDVVMM 103 (272)
T ss_pred HH----hhccceEEEeccccccccCCCcchhhheec
Confidence 31 11234699999997652 23478888754
No 290
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=6.3e-17 Score=195.91 Aligned_cols=112 Identities=21% Similarity=0.349 Sum_probs=96.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..|+++|++++|++.. ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus 1236 g~I~f~nVsf~Y~~~~-------------~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPEL-------------PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCCCC-------------CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEe
Confidence 3699999999996431 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
+++ -+.+++|+++|++||++.||+. |+||||..+. ..+.+++.+.
T Consensus 1303 I~~-i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~---~~tdeei~~A 1347 (1622)
T PLN03130 1303 ISK-FGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN---EHNDADLWES 1347 (1622)
T ss_pred ccc-CCHHHHHhccEEECCCCccccc-cHHHHhCcCC---CCCHHHHHHH
Confidence 963 4678899999999999999987 9999997653 2345555443
No 291
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=1.9e-16 Score=158.30 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=87.9
Q ss_pred ceEEEeeeEEEcCCCCc-Ccccc--c--cCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE
Q 009374 405 VAVQIRGLVKTFPGTRK-IGCCC--K--CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~-~~~~~--~--~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~ 479 (536)
..++++||+|.|...+. .++.. . .++...+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 46899999999976321 00000 0 0122455799999999999999999999999999999999999999999999
Q ss_pred EcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 480 IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 480 i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
++|. +++++|...+.+.+|++||+.+.....|.+.++.
T Consensus 83 ~~g~--------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 120 (264)
T PRK13546 83 RNGE--------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEI 120 (264)
T ss_pred ECCE--------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 9884 3467777778888999999988766666654443
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=1.5e-16 Score=174.71 Aligned_cols=115 Identities=18% Similarity=0.288 Sum_probs=90.4
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL 479 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~ 479 (536)
+.++++|+++.|++.. ..+.+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.
T Consensus 4 ~~l~~~~l~~~~~~~~-----------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 72 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ-----------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIR 72 (529)
T ss_pred ceEEEeceEEEecCCC-----------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEE
Confidence 3689999999996321 012699999999999999999999999999999999999986 799999
Q ss_pred EcCEecCCccc--HHHhh-cceEEEcCCCC--CCCCCCHHHHHHHHHHh-cCCChHh
Q 009374 480 IYGFSIRSSVS--MTNIQ-KSIGVCPQFNI--LWDALSGEEHLHLFANI-KGLPLDS 530 (536)
Q Consensus 480 i~g~~i~~~~~--~~~~~-~~ig~~pQ~~~--l~~~lTv~e~L~~~~~l-kg~~~~~ 530 (536)
++|.++..... ....| +.+||+||+.. +++.+|++|++.+.... .|.+.++
T Consensus 73 ~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (529)
T PRK15134 73 FHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREA 129 (529)
T ss_pred ECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHH
Confidence 99999853211 12233 57999999964 67889999998875443 3555443
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.68 E-value=9.6e-17 Score=176.13 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=88.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|+..... ..++.+.+.+++|+||++++||++||+|+||||||||+++|+|+++ ++|+|+++|.+
T Consensus 274 ~~l~~~~l~~~~~~~~~~----~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~ 348 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGI----LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQP 348 (529)
T ss_pred CcccccCcEEEeecCccc----cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEE
Confidence 468999999999531000 0000012369999999999999999999999999999999999985 89999999998
Q ss_pred cCCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhc
Q 009374 485 IRSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 485 i~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk 524 (536)
+.... +....++.+||+||+. .+++.+||+||+.+....+
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~ 392 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH 392 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhc
Confidence 74211 1223467899999996 5889999999998865443
No 294
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=8e-17 Score=175.81 Aligned_cols=104 Identities=19% Similarity=0.333 Sum_probs=86.9
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-cCccEEEEcCE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIYGF 483 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-pt~G~i~i~g~ 483 (536)
..++++|++|.|+... .+.+++|+||++++||++||+|+||||||||+++|+|+.+ |++|+|.++|.
T Consensus 258 ~~l~~~~l~~~~~~~~------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~ 325 (506)
T PRK13549 258 VILEVRNLTAWDPVNP------------HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGK 325 (506)
T ss_pred ceEEEecCcccccccc------------ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCE
Confidence 3689999999995310 1259999999999999999999999999999999999998 59999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCC---CCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFN---ILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~L~~~ 520 (536)
++......+..++.+||+||+. .+++.+|+.||+.+.
T Consensus 326 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (506)
T PRK13549 326 PVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA 365 (506)
T ss_pred ECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence 8843222234567899999995 588899999999864
No 295
>PLN03232 ABC transporter C family member; Provisional
Probab=99.68 E-value=5.7e-17 Score=195.98 Aligned_cols=111 Identities=14% Similarity=0.290 Sum_probs=95.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.|+++|++++|++.. ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|+
T Consensus 1234 ~I~f~nVsf~Y~~~~-------------~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL-------------PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECCCC-------------CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEh
Confidence 599999999996431 1599999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
++ -+.+++|+++|++||++.||+. |+||||..+. ..+.+++.+.
T Consensus 1301 ~~-i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~---~~sdeei~~a 1344 (1495)
T PLN03232 1301 AK-FGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS---EHNDADLWEA 1344 (1495)
T ss_pred hh-CCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---CCCHHHHHHH
Confidence 63 4567899999999999999987 9999997653 3455555443
No 296
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=3.6e-17 Score=152.57 Aligned_cols=105 Identities=27% Similarity=0.331 Sum_probs=86.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
+.+.|++|.|.... ..+++|++++||+|++||.+.++|+|||||||+++.|+|.+.||+|+|.|+|.|+.
T Consensus 2 i~~~~~~~~f~~g~----------~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVt 71 (263)
T COG1101 2 ISLSNATKTFFKGT----------PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT 71 (263)
T ss_pred cccccceeeecCCC----------hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecc
Confidence 45677788875432 12457999999999999999999999999999999999999999999999999996
Q ss_pred CcccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFAN 522 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~ 522 (536)
.. ...+-...++-++|++ ...++||++||+.+...
T Consensus 72 k~-~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~ 108 (263)
T COG1101 72 KK-SVAKRANLLARVFQDPLAGTAPELTIEENLALAES 108 (263)
T ss_pred cC-CHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHh
Confidence 43 2233334588899985 67999999999988653
No 297
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.68 E-value=1.4e-16 Score=156.20 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=70.7
Q ss_pred eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH 516 (536)
Q Consensus 437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~ 516 (536)
++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.... ...||+||++.+++.+|++||
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~~~~v~q~~~l~~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------PDRMVVFQNYSLLPWLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC------hhheEEecCcccCCCCCHHHH
Confidence 57899999999999999999999999999999999999999999999884211 124899999999999999999
Q ss_pred HHHHH
Q 009374 517 LHLFA 521 (536)
Q Consensus 517 L~~~~ 521 (536)
+.+..
T Consensus 75 l~~~~ 79 (230)
T TIGR01184 75 IALAV 79 (230)
T ss_pred HHHHH
Confidence 98863
No 298
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.68 E-value=1e-16 Score=176.77 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=81.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
++.++++||+|.|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~~l~i~~l~~~y~~~--------------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~- 68 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK--------------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP- 68 (556)
T ss_pred cEEEEEeeEEEEeCCC--------------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-
Confidence 3579999999999621 1599999999999999999999999999999999999999999999864
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+..+|||||++.+++.+|++|++.+.
T Consensus 69 -----------~~~i~~v~Q~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 69 -----------GIKVGYLPQEPQLDPEKTVRENVEEG 94 (556)
T ss_pred -----------CCEEEEEecCCCCCCCCcHHHHHHHh
Confidence 13599999999999999999999863
No 299
>PTZ00243 ABC transporter; Provisional
Probab=99.67 E-value=1.1e-16 Score=193.42 Aligned_cols=111 Identities=17% Similarity=0.341 Sum_probs=95.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.|+++|++.+|++.. ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|+
T Consensus 1308 ~I~f~nVsf~Y~~~~-------------~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL-------------PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCCCC-------------CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 599999999996531 1599999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
.+ .+.+++|+++|++||++.||+. |+||||..+. ..+.+++.+.
T Consensus 1375 ~~-i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~---~~sdeeI~~A 1418 (1560)
T PTZ00243 1375 GA-YGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL---EASSAEVWAA 1418 (1560)
T ss_pred cc-CCHHHHHhcceEECCCCccccc-cHHHHhCccc---CCCHHHHHHH
Confidence 63 4678899999999999999987 9999997542 2344555443
No 300
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.67 E-value=1.2e-16 Score=193.38 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=97.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..|+++|++.+|++.. ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus 1283 g~I~f~nVsf~Y~~~~-------------~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDL-------------DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCCC-------------cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 4699999999997531 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
+++ -+.+.+|+++|++||++.||+. |+||||..+. ..+.+++.+.
T Consensus 1350 I~~-i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sdeei~~a 1394 (1522)
T TIGR00957 1350 IAK-IGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS---QYSDEEVWWA 1394 (1522)
T ss_pred ccc-cCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---CCCHHHHHHH
Confidence 974 4678899999999999999997 9999997543 3455555443
No 301
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=1.6e-16 Score=175.09 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=80.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|++. +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.+++
T Consensus 3 ~~i~~~nls~~~~~~--------------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-- 66 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK--------------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-- 66 (552)
T ss_pred EEEEEeeEEEecCCC--------------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--
Confidence 478999999999622 1599999999999999999999999999999999999999999999864
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
+..+||+||++.+++++|++||+.+
T Consensus 67 ----------~~~i~~v~Q~~~~~~~~tv~e~i~~ 91 (552)
T TIGR03719 67 ----------GIKVGYLPQEPQLDPTKTVRENVEE 91 (552)
T ss_pred ----------CCEEEEEeccCCCCCCCcHHHHHHH
Confidence 1359999999999999999999986
No 302
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=2.8e-16 Score=173.90 Aligned_cols=118 Identities=23% Similarity=0.323 Sum_probs=98.1
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc---CccEEEEc
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIY 481 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p---t~G~i~i~ 481 (536)
..+.+++++..-+++. ++.++.|+|+|..+++||++|++||+||||||||++|+|..+. .+|+|.+|
T Consensus 24 ~~~~~~~~~~~~~~~~----------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKS----------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ceeEEEEEEEEecCCC----------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4577888887775531 1245799999999999999999999999999999999999874 79999999
Q ss_pred CEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC---CChHhHhhhhC
Q 009374 482 GFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG---LPLDSIKSVCA 536 (536)
Q Consensus 482 g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg---~~~~~~~~~v~ 536 (536)
|+.. +.+..++..||+.|+|.+++.|||+|+|.+.+++|- +++++.+++||
T Consensus 94 G~~~----~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~ 147 (613)
T KOG0061|consen 94 GRPR----DSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVE 147 (613)
T ss_pred CccC----chhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 9654 346788999999999999999999999999998873 24466665553
No 303
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=7.8e-17 Score=182.98 Aligned_cols=103 Identities=26% Similarity=0.457 Sum_probs=93.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++++|+.+ +++.+++|+||.|++||+++|+|||||||||++++|.+++.|++|+|+|+|.
T Consensus 348 ~g~ief~nV~FsYPsR------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~ 415 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGE 415 (1228)
T ss_pred ccceEEEEEEecCCCC------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCc
Confidence 3469999999999874 3568999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
|++. -+.+..|++||+|.|+++||. .|++||+.+.
T Consensus 416 di~~-~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G 450 (1228)
T KOG0055|consen 416 DIRN-LNLKWLRSQIGLVSQEPVLFA-TTIRENIRYG 450 (1228)
T ss_pred cchh-cchHHHHhhcCeeeechhhhc-ccHHHHHhcC
Confidence 9974 567788999999999999886 5999999874
No 304
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.67 E-value=3.5e-16 Score=166.24 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=96.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.++++||+|.|..++. .. .++++.+.||+|+||++++||++||+|++|||||||.|+|+|+.+|++|+|.++|.
T Consensus 278 ~~ll~V~~l~k~y~~~~~---~~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~ 353 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKG---LF-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353 (539)
T ss_pred CceeEeeeeeeeeccccc---cc-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCc
Confidence 567999999999986431 11 12245678999999999999999999999999999999999999999999999998
Q ss_pred ecCC-cccHHHhhcceEEEcCC--CCCCCCCCHHHHHHHHHHhcCC
Q 009374 484 SIRS-SVSMTNIQKSIGVCPQF--NILWDALSGEEHLHLFANIKGL 526 (536)
Q Consensus 484 ~i~~-~~~~~~~~~~ig~~pQ~--~~l~~~lTv~e~L~~~~~lkg~ 526 (536)
+..- ..+....|+.+-+++|+ ..|.|.+||++.|.-...+++.
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~ 399 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG 399 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc
Confidence 7321 22345567777777776 6899999999999988876654
No 305
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.67 E-value=1e-16 Score=192.42 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=97.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----------
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----------- 473 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p----------- 473 (536)
..|+++||++.|+++. +..+|+|+||++++||++||+|++||||||++++|.|+++|
T Consensus 1164 g~I~f~nVsF~Y~~~~------------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~ 1231 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRP------------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNE 1231 (1466)
T ss_pred ceEEEEEEEEECCCCC------------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccc
Confidence 3599999999997531 23599999999999999999999999999999999999998
Q ss_pred -------------------------------------------CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCC
Q 009374 474 -------------------------------------------TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDA 510 (536)
Q Consensus 474 -------------------------------------------t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~ 510 (536)
++|+|+++|.|+++ .+.+.+|+++|||||++.||+
T Consensus 1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~-~~~~~lR~~i~~V~Qep~LF~- 1309 (1466)
T PTZ00265 1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD-YNLKDLRNLFSIVSQEPMLFN- 1309 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh-CCHHHHHhhccEeCCCCcccc-
Confidence 69999999999963 467789999999999999996
Q ss_pred CCHHHHHHHHHHhcCCChHhHhhh
Q 009374 511 LSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 511 lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
.|++|||.+... ..+.+++++.
T Consensus 1310 gTIreNI~~g~~--~at~eeI~~A 1331 (1466)
T PTZ00265 1310 MSIYENIKFGKE--DATREDVKRA 1331 (1466)
T ss_pred ccHHHHHhcCCC--CCCHHHHHHH
Confidence 599999998632 3456666544
No 306
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=1.1e-16 Score=181.70 Aligned_cols=114 Identities=23% Similarity=0.397 Sum_probs=102.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.|+++|+++.|+.+ |++.+++|+||+|++||.+||+||+||||||.+.+|-+.+.|++|.|.|||+|+
T Consensus 987 ~I~~~~V~F~YPsR------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCC------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccc
Confidence 59999999999864 456899999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
++ -+.+..|++||.|.|+|.||+. |++||+.+. ..+ ++.+|+.+.+
T Consensus 1055 k~-lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG-~~~-vs~~eIi~Aa 1100 (1228)
T KOG0055|consen 1055 KD-LNLKWLRKQIGLVSQEPVLFNG-TIRENIAYG-SEE-VSEEEIIEAA 1100 (1228)
T ss_pred cc-CCHHHHHHhcceeccCchhhcc-cHHHHHhcc-CCC-CCHHHHHHHH
Confidence 74 5788999999999999999976 999999988 333 7888876654
No 307
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.66 E-value=1.7e-16 Score=154.92 Aligned_cols=95 Identities=25% Similarity=0.328 Sum_probs=77.9
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
+.++++++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 23 l~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 87 (224)
T cd03220 23 LGILGRKGEVGEF---------------WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS 87 (224)
T ss_pred hhhhhhhhhcCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch
Confidence 5677888888653 6999999999999999999999999999999999999999999999998762
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~ 529 (536)
. .. +...+.+.+|++||+.+.....+.+.+
T Consensus 88 ~------~~-------~~~~~~~~~tv~enl~~~~~~~~~~~~ 117 (224)
T cd03220 88 L------LG-------LGGGFNPELTGRENIYLNGRLLGLSRK 117 (224)
T ss_pred h------hc-------ccccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 1 11 123455789999999988766665443
No 308
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2.4e-16 Score=173.09 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=79.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~i~~ls~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFGAK---------------PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeCCc---------------EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---
Confidence 7899999999642 5999999999999999999999999999999999999999999999862
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
+.+||+||+..+++++|++|++.+
T Consensus 64 ---------~~i~~~~q~~~~~~~~tv~e~l~~ 87 (530)
T PRK15064 64 ---------ERLGKLRQDQFAFEEFTVLDTVIM 87 (530)
T ss_pred ---------CEEEEEeccCCcCCCCcHHHHHHH
Confidence 359999999999999999999976
No 309
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.65 E-value=2.5e-16 Score=173.49 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=84.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|+++ ..+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 322 ~i~~~~v~f~y~~~--------------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQDN--------------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCCC--------------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 69999999999742 1489999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEH 516 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~ 516 (536)
.+ .+.+.+|+++||+||++.+|+. |++||
T Consensus 388 ~~-~~~~~~~~~i~~v~q~~~lf~~-ti~~n 416 (547)
T PRK10522 388 TA-EQPEDYRKLFSAVFTDFHLFDQ-LLGPE 416 (547)
T ss_pred CC-CCHHHHhhheEEEecChhHHHH-hhccc
Confidence 63 4567789999999999999875 66665
No 310
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.65 E-value=1.7e-16 Score=149.58 Aligned_cols=79 Identities=29% Similarity=0.550 Sum_probs=69.6
Q ss_pred EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (536)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~ 488 (536)
++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 2 ~~~l~~~~~~~---------------~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~- 65 (180)
T cd03214 2 VENLSVGYGGR---------------TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS- 65 (180)
T ss_pred eeEEEEEECCe---------------eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-
Confidence 67899999642 59999999999999999999999999999999999999999999999999853
Q ss_pred ccHHHhhcceEEEcC
Q 009374 489 VSMTNIQKSIGVCPQ 503 (536)
Q Consensus 489 ~~~~~~~~~ig~~pQ 503 (536)
.+....++.+||+||
T Consensus 66 ~~~~~~~~~i~~~~q 80 (180)
T cd03214 66 LSPKELARKIAYVPQ 80 (180)
T ss_pred CCHHHHHHHHhHHHH
Confidence 233456678999999
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.64 E-value=5.2e-16 Score=171.18 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=82.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++|+++.|++. .+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+++
T Consensus 322 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~- 385 (556)
T PRK11819 322 DKVIEAENLSKSFGDR---------------LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE- 385 (556)
T ss_pred CeEEEEEeEEEEECCe---------------eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence 3479999999999642 599999999999999999999999999999999999999999999843
Q ss_pred ecCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcC
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg 525 (536)
+ ..+||+||+. .+++++|++|++.+.....+
T Consensus 386 ~-----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 417 (556)
T PRK11819 386 T-----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK 417 (556)
T ss_pred c-----------eEEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence 2 1499999996 78899999999988654433
No 312
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.64 E-value=3.3e-16 Score=188.03 Aligned_cols=101 Identities=18% Similarity=0.353 Sum_probs=89.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE-cCEe
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI-YGFS 484 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i-~g~~ 484 (536)
.++++||++.|+++. ++++++|+||++++||++||+|||||||||++++|+|+++|++|+|++ +|.+
T Consensus 382 ~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK------------DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCCC------------CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcc
Confidence 599999999997531 236999999999999999999999999999999999999999999999 5688
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.+ .+.+.+|+++||+||++.||+. |++||+.+.
T Consensus 450 i~~-~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g 483 (1466)
T PTZ00265 450 LKD-INLKWWRSKIGVVSQDPLLFSN-SIKNNIKYS 483 (1466)
T ss_pred hhh-CCHHHHHHhccEecccccchhc-cHHHHHHhc
Confidence 753 3456788999999999999985 999999885
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.64 E-value=5.8e-16 Score=168.85 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=75.0
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC---CCCCCCC
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN---ILWDALS 512 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~---~l~~~lT 512 (536)
+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++......+..++.+||+||++ .+++.+|
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 7999999999999999999999999999999999999999999999998853222234567899999995 6889999
Q ss_pred HHHHHHHH
Q 009374 513 GEEHLHLF 520 (536)
Q Consensus 513 v~e~L~~~ 520 (536)
++||+.+.
T Consensus 347 v~e~l~~~ 354 (501)
T PRK10762 347 VKENMSLT 354 (501)
T ss_pred HHHHhhhh
Confidence 99999874
No 314
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.63 E-value=4.4e-16 Score=161.31 Aligned_cols=105 Identities=28% Similarity=0.468 Sum_probs=93.7
Q ss_pred CCCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (536)
Q Consensus 402 ~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~ 481 (536)
++...+.++++...-++.+ ++.|+|+||++.+||.+|++||+|||||||-|+|.|..+|++|.|.+|
T Consensus 330 ~P~g~L~Ve~l~~~PPg~~-------------~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD 396 (580)
T COG4618 330 APQGALSVERLTAAPPGQK-------------KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD 396 (580)
T ss_pred CCCceeeEeeeeecCCCCC-------------CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec
Confidence 3455789999988665542 379999999999999999999999999999999999999999999999
Q ss_pred CEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 482 GFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 482 g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
|.|++ +.+.++..++|||.||+-.||+. |+.||+.-|.
T Consensus 397 ga~l~-qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~ 434 (580)
T COG4618 397 GADLR-QWDREQLGRHIGYLPQDVELFDG-TIAENIARFG 434 (580)
T ss_pred chhhh-cCCHHHhccccCcCcccceecCC-cHHHHHHhcc
Confidence 99997 56788999999999999999998 9999997654
No 315
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.63 E-value=5.1e-16 Score=168.91 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=81.0
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRLSDT---------------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEcCCe---------------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence 58999999999642 499999999999999999999999999999999999999999999999876
Q ss_pred CCcccHHHhhcceEEEcCCCCC--C------CCCCHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNIL--W------DALSGEEHLH 518 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l--~------~~lTv~e~L~ 518 (536)
.. .+....++.+|++||++.+ + ..+|++|++.
T Consensus 68 ~~-~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 107 (490)
T PRK10938 68 TR-LSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ 107 (490)
T ss_pred cc-CCHHHHHHHhceeccCcchhhcccchhhccccHHHhcc
Confidence 42 1233456679999998643 1 1578998874
No 316
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=9.9e-16 Score=168.16 Aligned_cols=89 Identities=22% Similarity=0.288 Sum_probs=79.3
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~- 381 (530)
T PRK15064 318 NALEVENLTKGFDNG---------------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN- 381 (530)
T ss_pred ceEEEEeeEEeeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-
Confidence 479999999999642 5999999999999999999999999999999999999999999998762
Q ss_pred cCCcccHHHhhcceEEEcCCCC--CCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNI--LWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~ 520 (536)
+.+||+||+.. +++.+|++|++.++
T Consensus 382 -----------~~i~~~~q~~~~~~~~~~t~~~~~~~~ 408 (530)
T PRK15064 382 -----------ANIGYYAQDHAYDFENDLTLFDWMSQW 408 (530)
T ss_pred -----------eEEEEEcccccccCCCCCcHHHHHHHh
Confidence 46999999863 66789999998764
No 317
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.63 E-value=6.9e-16 Score=149.44 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=70.3
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE-EcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~-i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|. ++|..+ .+| |.+.+++.+|++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-----------~~~---~~~~l~~~ltv~ 67 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-----------PLG---ANSFILPGLTGE 67 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-----------ccc---cccccCCcCcHH
Confidence 79999999999999999999999999999999999999999997 766433 122 456689999999
Q ss_pred HHHHHHHHhcCCChHhHh
Q 009374 515 EHLHLFANIKGLPLDSIK 532 (536)
Q Consensus 515 e~L~~~~~lkg~~~~~~~ 532 (536)
||+.+++...+.+.+++.
T Consensus 68 enl~~~~~~~~~~~~~~~ 85 (213)
T PRK15177 68 ENARMMASLYGLDGDEFS 85 (213)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 999998887776655443
No 318
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.63 E-value=1.3e-15 Score=153.50 Aligned_cols=85 Identities=20% Similarity=0.333 Sum_probs=76.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++++++. +. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 37 ~~~l~i~nls~~--~~---------------~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g- 98 (282)
T cd03291 37 DNNLFFSNLCLV--GA---------------PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG- 98 (282)
T ss_pred CCeEEEEEEEEe--cc---------------cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-
Confidence 456999999985 21 599999999999999999999999999999999999999999999987
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.+||+||++.+++. |++||+.+.
T Consensus 99 -------------~i~yv~q~~~l~~~-tv~enl~~~ 121 (282)
T cd03291 99 -------------RISFSSQFSWIMPG-TIKENIIFG 121 (282)
T ss_pred -------------EEEEEeCccccccc-CHHHHhhcc
Confidence 28999999988875 999999863
No 319
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.63 E-value=6.3e-16 Score=170.57 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=86.9
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|+++.. .+..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus 336 ~~i~~~~v~f~y~~~~~----------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG----------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCCC----------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 35999999999975310 01258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHL 517 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L 517 (536)
+++ .+.++.|+.+++++|++.+|++ |++||+
T Consensus 406 i~~-~~~~~~~~~i~~v~q~~~lf~~-ti~~n~ 436 (555)
T TIGR01194 406 VSA-DSRDDYRDLFSAIFADFHLFDD-LIGPDE 436 (555)
T ss_pred CCC-CCHHHHHhhCcEEccChhhhhh-hhhccc
Confidence 964 3556788999999999999976 677774
No 320
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.62 E-value=4.6e-16 Score=141.50 Aligned_cols=112 Identities=23% Similarity=0.267 Sum_probs=89.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|..... ..++..+.||+.+||++++||..|++|.||||||||-+||+|+++||+|+|.+||+.+
T Consensus 4 LLeV~nLsKtF~~~~~------lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L 77 (267)
T COG4167 4 LLEVRNLSKTFRYRTG------LFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL 77 (267)
T ss_pred hhhhhhhhhhhhhhhh------hhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc
Confidence 4688999999976432 1234567899999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhc
Q 009374 486 RSSVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk 524 (536)
.- .+.....++|-+++|++ .+.|.+.+.+-|....++.
T Consensus 78 ~~-~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~ 117 (267)
T COG4167 78 HF-GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 (267)
T ss_pred cc-cchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence 42 23333346799999985 5677777777777766554
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.62 E-value=1.2e-15 Score=168.29 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=82.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++|+++.|++. .+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 320 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~- 383 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK---------------LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE- 383 (552)
T ss_pred CeEEEEeeEEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-
Confidence 3479999999999642 599999999999999999999999999999999999999999999843
Q ss_pred ecCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcC
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg 525 (536)
+ ..+||+||+. .+++.+|++|++.+.....+
T Consensus 384 ~-----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 415 (552)
T TIGR03719 384 T-----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ 415 (552)
T ss_pred c-----------eEEEEEeCCccccCCCCcHHHHHHhhccccc
Confidence 2 1599999986 58889999999988654333
No 322
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.1e-15 Score=166.37 Aligned_cols=95 Identities=18% Similarity=0.267 Sum_probs=81.4
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.+ . .+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 249 ~~i~~~~l~~~~--~---------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 311 (491)
T PRK10982 249 VILEVRNLTSLR--Q---------------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKK 311 (491)
T ss_pred cEEEEeCccccc--C---------------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEE
Confidence 468999998864 1 48999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCC---CCCCCCCHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFN---ILWDALSGEEH 516 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~ 516 (536)
+......+..++.+||+||+. .+++++|+.|+
T Consensus 312 i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 312 INNHNANEAINHGFALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred CCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHh
Confidence 853222334567899999984 57899988777
No 323
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.62 E-value=8e-16 Score=167.35 Aligned_cols=100 Identities=23% Similarity=0.295 Sum_probs=81.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-CccEEEEcC
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYG 482 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~i~g 482 (536)
.+.++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+.+| ++|+|+++|
T Consensus 258 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g 322 (490)
T PRK10938 258 EPRIVLNNGVVSYNDR---------------PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFG 322 (490)
T ss_pred CceEEEeceEEEECCe---------------eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEec
Confidence 3579999999999642 599999999999999999999999999999999998876 699999999
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCC--CCHHHHHH
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDA--LSGEEHLH 518 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~--lTv~e~L~ 518 (536)
.++.........++.+||+||++.++.. .|++|.+.
T Consensus 323 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 360 (490)
T PRK10938 323 RRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL 360 (490)
T ss_pred ccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence 8763222233456789999998766443 56766654
No 324
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.62 E-value=1.3e-15 Score=184.17 Aligned_cols=100 Identities=26% Similarity=0.423 Sum_probs=90.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..|+++||+.+|++.. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++ ++|+|.|+|.|
T Consensus 1216 g~I~f~nVs~~Y~~~~-------------~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAG-------------RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCCCC-------------cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEE
Confidence 4699999999997531 269999999999999999999999999999999999997 89999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.. -+.+..|++++|+||++.||+. |+||||..+
T Consensus 1282 i~~-i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~ 1315 (1490)
T TIGR01271 1282 WNS-VTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY 1315 (1490)
T ss_pred ccc-CCHHHHHhceEEEeCCCccCcc-CHHHHhCcc
Confidence 963 4677899999999999999987 999999654
No 325
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.5e-15 Score=142.06 Aligned_cols=104 Identities=22% Similarity=0.354 Sum_probs=92.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF 483 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~ 483 (536)
.++++||+..-.++ +.+|+++||+|++||+.+|+||||||||||.+.|+|.. .+|+|+|.++|+
T Consensus 3 ~L~I~dLhv~v~~~--------------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge 68 (251)
T COG0396 3 MLEIKDLHVEVEGK--------------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE 68 (251)
T ss_pred eeEEeeeEEEecCc--------------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc
Confidence 57899999888652 26999999999999999999999999999999999985 899999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
||.....-+++|..|..-+|.+.=++..|+.+-|+...+.
T Consensus 69 dI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~ 108 (251)
T COG0396 69 DILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA 108 (251)
T ss_pred ccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence 9976555567899999999999999999999999876554
No 326
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=5.3e-16 Score=136.89 Aligned_cols=104 Identities=25% Similarity=0.409 Sum_probs=88.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCE
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGF 483 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~ 483 (536)
+.++|++.+-+++ ..+.++|++|.+|||+.|.||+|+|||||++-+.|.+.+. +|++.++++
T Consensus 3 l~l~nvsl~l~g~---------------cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~ 67 (213)
T COG4136 3 LCLKNVSLRLPGS---------------CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ 67 (213)
T ss_pred eeeeeeeecCCCc---------------eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCe
Confidence 5677887666553 4899999999999999999999999999999999988763 699999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH--HHHhcCCCh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL--FANIKGLPL 528 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~--~~~lkg~~~ 528 (536)
++. .....+|++|+.+|++.|||+++|.|||.| .+.+||-.+
T Consensus 68 ~l~---~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aR 111 (213)
T COG4136 68 RLD---MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNAR 111 (213)
T ss_pred ecc---ccchhhhheeeeecccccccccccccceEEecCcccccHHH
Confidence 884 245668899999999999999999999976 567787543
No 327
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.61 E-value=3.2e-15 Score=159.59 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=81.2
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.++++||++.|++.. .+.+|+|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 20 ~mL~lknL~~~~~~~~------------~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~ 87 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE------------YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87 (549)
T ss_pred ceeEEEEEEEecCCCc------------cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 4688888888886531 2259999999999999999999999999999999999999999999999965
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
. .++ +...+.+.+|++||+.+.+...+.+.++.
T Consensus 88 ~-----------~i~---~~~~l~~~lTV~EnL~l~~~~~~~~~~e~ 120 (549)
T PRK13545 88 A-----------LIA---ISSGLNGQLTGIENIELKGLMMGLTKEKI 120 (549)
T ss_pred e-----------eEE---eccccCCCCcHHHHHHhhhhhcCCCHHHH
Confidence 2 122 23456778999999998776666654443
No 328
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.2e-15 Score=166.43 Aligned_cols=86 Identities=20% Similarity=0.287 Sum_probs=75.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC---CCCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN---ILWDAL 511 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~---~l~~~l 511 (536)
.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|+++|+++......+..++.+||+||++ .+++.+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 38999999999999999999999999999999999999999999999998743222344567899999985 489999
Q ss_pred CHHHHHHHH
Q 009374 512 SGEEHLHLF 520 (536)
Q Consensus 512 Tv~e~L~~~ 520 (536)
|+.|++.+.
T Consensus 347 tv~e~l~~~ 355 (501)
T PRK11288 347 SVADNINIS 355 (501)
T ss_pred CHHHHhccc
Confidence 999999864
No 329
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.3e-16 Score=160.62 Aligned_cols=100 Identities=26% Similarity=0.441 Sum_probs=90.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++++|+++. .+|++|+||++++||-++|+|++||||||++..|+|.++|++|+|.++|.++
T Consensus 336 ~l~~~~vsF~y~~~~-------------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQQ-------------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCCc-------------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcCh
Confidence 789999999998753 2699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. -+.+++|+.+++++|...||.. |+|+||.+-
T Consensus 403 ~~-l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA 435 (573)
T COG4987 403 AS-LDEQALRETISVLTQRVHLFSG-TLRDNLRLA 435 (573)
T ss_pred hh-CChhhHHHHHhhhccchHHHHH-HHHHHHhhc
Confidence 63 2334578899999999999987 999999774
No 330
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.60 E-value=1.9e-15 Score=181.19 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=79.3
Q ss_pred CcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc----ccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCC
Q 009374 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT----PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW 508 (536)
Q Consensus 433 ~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~----~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~ 508 (536)
.+.+|+|+|+.+++||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.. .....|+.+||++|+|.++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~--~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE--IKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHH--HHhhcCceeEEeccccccC
Confidence 357999999999999999999999999999999999986 5799999999998731 1234567799999999999
Q ss_pred CCCCHHHHHHHHHHhc
Q 009374 509 DALSGEEHLHLFANIK 524 (536)
Q Consensus 509 ~~lTv~e~L~~~~~lk 524 (536)
+.+||+|+|.+.++++
T Consensus 151 ~~lTV~E~l~f~~~~~ 166 (1394)
T TIGR00956 151 PHLTVGETLDFAARCK 166 (1394)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999987765
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.60 E-value=2.2e-15 Score=168.66 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=80.0
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++||+|.|++. .+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+ |.
T Consensus 317 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~ 380 (635)
T PRK11147 317 KIVFEMENVNYQIDGK---------------QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT 380 (635)
T ss_pred CceEEEeeeEEEECCe---------------EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC
Confidence 3479999999999642 5999999999999999999999999999999999999999999998 53
Q ss_pred ecCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~ 520 (536)
++ .+||++|+. .+++++||.|++.+.
T Consensus 381 ~~-----------~i~y~~q~~~~l~~~~tv~e~l~~~ 407 (635)
T PRK11147 381 KL-----------EVAYFDQHRAELDPEKTVMDNLAEG 407 (635)
T ss_pred Cc-----------EEEEEeCcccccCCCCCHHHHHHhh
Confidence 22 499999985 689999999999874
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.60 E-value=2.3e-15 Score=136.74 Aligned_cols=70 Identities=27% Similarity=0.370 Sum_probs=63.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--- 62 (144)
T cd03221 1 IELENLSKTYGGK---------------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--- 62 (144)
T ss_pred CEEEEEEEEECCc---------------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---
Confidence 3678999999642 5999999999999999999999999999999999999999999999883
Q ss_pred CcccHHHhhcceEEEcC
Q 009374 487 SSVSMTNIQKSIGVCPQ 503 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ 503 (536)
+.++|+||
T Consensus 63 ---------~~i~~~~~ 70 (144)
T cd03221 63 ---------VKIGYFEQ 70 (144)
T ss_pred ---------EEEEEEcc
Confidence 35888888
No 333
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=2e-15 Score=180.80 Aligned_cols=92 Identities=23% Similarity=0.315 Sum_probs=82.2
Q ss_pred CCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374 430 KTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 430 ~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~ 506 (536)
|+..+.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . ..|+.+||++|+|.
T Consensus 174 k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~-~~~~~i~yv~Q~d~ 249 (1470)
T PLN03140 174 KKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE---F-VPRKTSAYISQNDV 249 (1470)
T ss_pred CCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh---h-cccceeEEeccccc
Confidence 334567999999999999999999999999999999999999998 9999999998742 1 23678999999999
Q ss_pred CCCCCCHHHHHHHHHHhcC
Q 009374 507 LWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 507 l~~~lTv~e~L~~~~~lkg 525 (536)
++++|||+|+|.|.++++|
T Consensus 250 ~~~~lTV~EtL~f~a~~~~ 268 (1470)
T PLN03140 250 HVGVMTVKETLDFSARCQG 268 (1470)
T ss_pred CCCcCcHHHHHHHHHHhcC
Confidence 9999999999999988775
No 334
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.59 E-value=3e-15 Score=167.96 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=80.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|+++ ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|++.+++
T Consensus 450 ~~i~~~nv~~~~~~~--------------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-- 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNG--------------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-- 513 (659)
T ss_pred CeEEEEeeEEECCCC--------------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--
Confidence 469999999999642 1599999999999999999999999999999999999999999998653
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
++++|||||++.+++. |++||+.+..
T Consensus 514 ----------~~~i~~v~Q~~~l~~~-tv~eni~~~~ 539 (659)
T TIGR00954 514 ----------KGKLFYVPQRPYMTLG-TLRDQIIYPD 539 (659)
T ss_pred ----------CCcEEEECCCCCCCCc-CHHHHHhcCC
Confidence 4579999999999987 9999998743
No 335
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.59 E-value=3.1e-15 Score=163.41 Aligned_cols=96 Identities=17% Similarity=0.301 Sum_probs=81.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++ .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 267 ~~l~~~~l~~--------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 326 (510)
T PRK15439 267 PVLTVEDLTG--------------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE 326 (510)
T ss_pred ceEEEeCCCC--------------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE
Confidence 4688998872 16999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCC---CCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFN---ILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~L~~~ 520 (536)
+......+..++.+||+||+. .+++.+|+.|++...
T Consensus 327 i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~ 365 (510)
T PRK15439 327 INALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCAL 365 (510)
T ss_pred CCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhh
Confidence 853222223456899999984 589999999998643
No 336
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.59 E-value=5.8e-15 Score=146.88 Aligned_cols=108 Identities=21% Similarity=0.413 Sum_probs=90.2
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-c----CccEEEEc
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-V----TGGDALIY 481 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-p----t~G~i~i~ 481 (536)
++++||+..|.... +.+.||+|+||++++||++||+|.+|||||||.+.|.|+++ | ++|+|.++
T Consensus 2 L~v~nL~v~f~~~~-----------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~ 70 (316)
T COG0444 2 LEVKNLSVSFPTDA-----------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD 70 (316)
T ss_pred ceEeeeEEEEecCC-----------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEEC
Confidence 57899999997532 24579999999999999999999999999999999999997 3 67999999
Q ss_pred CEecCCccc--HHHhh-cceEEEcCC--CCCCCCCCHHHHHHHHHHhcC
Q 009374 482 GFSIRSSVS--MTNIQ-KSIGVCPQF--NILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 482 g~~i~~~~~--~~~~~-~~ig~~pQ~--~~l~~~lTv~e~L~~~~~lkg 525 (536)
|.|+.+..+ ++++| +.|+++||+ +.|.|-+|+.+++.-..+.++
T Consensus 71 g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~ 119 (316)
T COG0444 71 GKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG 119 (316)
T ss_pred CcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh
Confidence 998864332 33444 579999998 689999999999987766543
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=6.7e-15 Score=135.51 Aligned_cols=85 Identities=31% Similarity=0.608 Sum_probs=72.6
Q ss_pred EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (536)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~ 488 (536)
++++++.|++. .+++++|+++++||+++|+|+|||||||++++|+|+++|++|+++++|.++..
T Consensus 2 ~~~~~~~~~~~---------------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~- 65 (157)
T cd00267 2 IENLSFRYGGR---------------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK- 65 (157)
T ss_pred eEEEEEEeCCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc-
Confidence 57888888542 59999999999999999999999999999999999999999999999998742
Q ss_pred ccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374 489 VSMTNIQKSIGVCPQFNILWDALSGEEH 516 (536)
Q Consensus 489 ~~~~~~~~~ig~~pQ~~~l~~~lTv~e~ 516 (536)
....+.++.++|+|| |+..|-
T Consensus 66 ~~~~~~~~~i~~~~q-------lS~G~~ 86 (157)
T cd00267 66 LPLEELRRRIGYVPQ-------LSGGQR 86 (157)
T ss_pred CCHHHHHhceEEEee-------CCHHHH
Confidence 224456788999999 666554
No 338
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.55 E-value=5.8e-15 Score=141.13 Aligned_cols=98 Identities=22% Similarity=0.356 Sum_probs=83.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...|+++|++.+|+++ ++|+|+|++|++||-.+|+|+||||||||+++++|..+|++|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r~gk---------------~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRRNGK---------------KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEECCE---------------eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeee
Confidence 4579999999999764 6999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccH-HHhhcceEEEcCC--CCCCCCCCHHHHH
Q 009374 484 SIRSSVSM-TNIQKSIGVCPQF--NILWDALSGEEHL 517 (536)
Q Consensus 484 ~i~~~~~~-~~~~~~ig~~pQ~--~~l~~~lTv~e~L 517 (536)
...+ .+. .++|++||+|.-. ..+-++.+|+|-+
T Consensus 94 ~~G~-~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvV 129 (257)
T COG1119 94 RFGK-GETIFELRKRIGLVSSELHERFRVRETVRDVV 129 (257)
T ss_pred eccC-CcchHHHHHHhCccCHHHHhhcccccccceee
Confidence 8764 344 7899999999752 3444556666654
No 339
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.55 E-value=1.3e-14 Score=143.46 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=65.4
Q ss_pred eeeceeEEEe-----cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCC
Q 009374 436 AIKGLWVNIA-----KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDA 510 (536)
Q Consensus 436 al~~lsl~v~-----~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~ 510 (536)
.+++++|++. +||+++|+|+||||||||+++|+|+.+|++|+|.++|. .++|+||+......
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~~~~~ 75 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIKADYE 75 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEecccccCCCC
Confidence 6677777776 79999999999999999999999999999999998873 58999999888888
Q ss_pred CCHHHHHHHHHH
Q 009374 511 LSGEEHLHLFAN 522 (536)
Q Consensus 511 lTv~e~L~~~~~ 522 (536)
+|++|++.....
T Consensus 76 ~tv~e~l~~~~~ 87 (246)
T cd03237 76 GTVRDLLSSITK 87 (246)
T ss_pred CCHHHHHHHHhh
Confidence 999999976543
No 340
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=9.6e-15 Score=169.66 Aligned_cols=102 Identities=21% Similarity=0.370 Sum_probs=92.6
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+-.|+++|++.+|+... -.+|+|+||+|++||.+|++|..||||||++++|-++..|++|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYrp~l-------------p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNL-------------PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeCCCC-------------cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe
Confidence 45799999999997542 15999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
||.+ -...+.|+++++.||++.||.. |+|+||.=+
T Consensus 1203 dI~~-igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf 1237 (1381)
T KOG0054|consen 1203 DISK-IGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF 1237 (1381)
T ss_pred eccc-ccHHHHHhcCeeeCCCCceecC-ccccccCcc
Confidence 9974 5788999999999999999988 999999443
No 341
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=5.2e-15 Score=143.09 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=71.9
Q ss_pred ceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc---ccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS---VSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~---~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
+++|+.+...+++|-|++||||||++|||+|+.+|+.|.|.+||+-+.+. -....-+|++||++|+..|||++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 47888888899999999999999999999999999999999999865321 122345788999999999999999999
Q ss_pred HHHHHH
Q 009374 516 HLHLFA 521 (536)
Q Consensus 516 ~L~~~~ 521 (536)
||.+..
T Consensus 96 NL~YG~ 101 (352)
T COG4148 96 NLRYGM 101 (352)
T ss_pred chhhhh
Confidence 998754
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=1.7e-14 Score=135.29 Aligned_cols=74 Identities=28% Similarity=0.364 Sum_probs=62.4
Q ss_pred eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc
Q 009374 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV 489 (536)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~ 489 (536)
.|++|.|++. .+++++ +++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 4 ~~l~~~~~~~---------------~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----- 62 (177)
T cd03222 4 PDCVKRYGVF---------------FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----- 62 (177)
T ss_pred CCeEEEECCE---------------EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----
Confidence 4788999642 578884 9999999999999999999999999999999999999998843
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374 490 SMTNIQKSIGVCPQFNILWDALSGEEH 516 (536)
Q Consensus 490 ~~~~~~~~ig~~pQ~~~l~~~lTv~e~ 516 (536)
+||+||+.. |+..|.
T Consensus 63 --------i~~~~q~~~----LSgGq~ 77 (177)
T cd03222 63 --------PVYKPQYID----LSGGEL 77 (177)
T ss_pred --------EEEEcccCC----CCHHHH
Confidence 678888754 565443
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.53 E-value=3.1e-14 Score=157.33 Aligned_cols=88 Identities=23% Similarity=0.242 Sum_probs=78.8
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++|.|++ ..++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++
T Consensus 338 ~~~l~~~~ls~~~~~----------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLGD----------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-- 399 (590)
T ss_pred ceEEEEcceEEEECC----------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--
Confidence 346999999999953 25899999999999999999999999999999999999999999874
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+ .+||+||+..+.+++||+|++.+..
T Consensus 400 -~-----------~i~y~~Q~~~~~~~~tv~e~l~~~~ 425 (590)
T PRK13409 400 -L-----------KISYKPQYIKPDYDGTVEDLLRSIT 425 (590)
T ss_pred -e-----------eEEEecccccCCCCCcHHHHHHHHh
Confidence 1 4899999998899999999998753
No 344
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.52 E-value=6.5e-14 Score=149.07 Aligned_cols=119 Identities=16% Similarity=0.273 Sum_probs=95.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC----ccEEEE
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDALI 480 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt----~G~i~i 480 (536)
..++++||++.|.... ..+.||+|+||++.+||++||+|.+||||||+.+.|.|++++. +|+|.+
T Consensus 4 ~lL~V~nL~v~~~~~~-----------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~ 72 (539)
T COG1123 4 PLLEVENLTVEFATDG-----------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVIL 72 (539)
T ss_pred ceEEEeceEEEEecCC-----------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEE
Confidence 3789999999998642 2357999999999999999999999999999999999999887 899999
Q ss_pred cCEecCCcc--cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHHhcC-CChHhHhhh
Q 009374 481 YGFSIRSSV--SMTNIQ-KSIGVCPQFN--ILWDALSGEEHLHLFANIKG-LPLDSIKSV 534 (536)
Q Consensus 481 ~g~~i~~~~--~~~~~~-~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg-~~~~~~~~~ 534 (536)
+|.|+.... +++++| +.|+|+||++ .|-|-+|+.+++.--.++++ .++++.+++
T Consensus 73 ~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~ 132 (539)
T COG1123 73 DGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR 132 (539)
T ss_pred CCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHH
Confidence 999875322 234444 6799999984 56777999999987666665 445554443
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.3e-14 Score=158.98 Aligned_cols=88 Identities=24% Similarity=0.295 Sum_probs=76.0
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++|++|.|++. .+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~~---------------~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~ 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR---------------IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG 374 (638)
T ss_pred CceEEEEeeEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC
Confidence 3479999999999642 5999999999999999999999999999999999999999999998631
Q ss_pred ecCCcccHHHhhcceEEEcCCC--CCCCCCCHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFN--ILWDALSGEEHLH 518 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~ 518 (536)
..+||++|+. .+.+..|+.+++.
T Consensus 375 ------------~~igy~~Q~~~~~l~~~~~~~~~~~ 399 (638)
T PRK10636 375 ------------IKLGYFAQHQLEFLRADESPLQHLA 399 (638)
T ss_pred ------------EEEEEecCcchhhCCccchHHHHHH
Confidence 2599999974 4667778888764
No 346
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.51 E-value=2.4e-14 Score=139.62 Aligned_cols=73 Identities=32% Similarity=0.393 Sum_probs=64.0
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCC--CCCHHHHHHH
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD--ALSGEEHLHL 519 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~--~lTv~e~L~~ 519 (536)
|++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++. ..++.+||+||++.++. .+|++|++.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~------~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG------KGWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch------HhhCcEEEecccccccCCCCccHHHHHHh
Confidence 568899999999999999999999999999999999999998762 24678999999987643 4899999976
Q ss_pred H
Q 009374 520 F 520 (536)
Q Consensus 520 ~ 520 (536)
.
T Consensus 75 ~ 75 (223)
T TIGR03771 75 G 75 (223)
T ss_pred c
Confidence 4
No 347
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.50 E-value=2.8e-14 Score=147.00 Aligned_cols=76 Identities=25% Similarity=0.417 Sum_probs=65.6
Q ss_pred EeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 452 LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
|+||||||||||+++|+|+.+|++|+|.++|.++.. ....++.+||+||+..+++++|++||+.+..+.++.+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~---~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTN---VPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCC---CCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH
Confidence 689999999999999999999999999999999842 1234678999999999999999999999987766665443
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.8e-14 Score=157.68 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=58.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
++++||+|.|++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~i~nls~~~g~~---------------~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~ 63 (638)
T PRK10636 2 IVFSSLQIRRGVR---------------VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEEEeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 7899999999653 5999999999999999999999999999999999999999999999873
No 349
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=3.8e-14 Score=138.19 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=65.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||+|.|..+.. + ++...+.|||||||+|++||++||+|.|||||||+-|+|.|+++||+|+|+++|.+
T Consensus 3 ~ll~v~~l~k~f~~~~~-----~-~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~ 76 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG-----F-GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD 76 (268)
T ss_pred ceEEEeccEEEEecccc-----c-CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence 46899999999975421 0 11224689999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 009374 485 IR 486 (536)
Q Consensus 485 i~ 486 (536)
+.
T Consensus 77 i~ 78 (268)
T COG4608 77 IT 78 (268)
T ss_pred hh
Confidence 74
No 350
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.1e-14 Score=129.31 Aligned_cols=122 Identities=16% Similarity=0.265 Sum_probs=96.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe-
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS- 484 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~- 484 (536)
.+.++|++|+|.=... ..-..++++++||+|+.|||++|=||+||||||++++|-|.+.|++|+|.+.-..
T Consensus 4 ~l~v~~~~KtFtlH~q--------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ--------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec--------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcc
Confidence 4788999999853211 1113468999999999999999999999999999999999999999999985432
Q ss_pred -c--CC--cccHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 485 -I--RS--SVSMTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 485 -i--~~--~~~~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
+ .. ..+.-++ |+.|||+.|+--..|.....|-+.-...-+|++++..++.+
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a 132 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKA 132 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHH
Confidence 2 11 1222334 46799999999999999999999888888999988766543
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=99.50 E-value=1e-13 Score=156.11 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=73.1
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++. ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 507 ~~L~~~~ls~~y~~~--------------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-- 570 (718)
T PLN03073 507 PIISFSDASFGYPGG--------------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-- 570 (718)
T ss_pred ceEEEEeeEEEeCCC--------------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--
Confidence 579999999999642 1489999999999999999999999999999999999999999998754
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLH 518 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~ 518 (536)
+..+||+||+. .+.+++.++..
T Consensus 571 ----------~~~igyv~Q~~--~~~l~~~~~~~ 592 (718)
T PLN03073 571 ----------KVRMAVFSQHH--VDGLDLSSNPL 592 (718)
T ss_pred ----------ceeEEEEeccc--cccCCcchhHH
Confidence 23599999985 35566666643
No 352
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.49 E-value=2.5e-14 Score=142.15 Aligned_cols=93 Identities=23% Similarity=0.270 Sum_probs=73.4
Q ss_pred eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE----------
Q 009374 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL---------- 479 (536)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~---------- 479 (536)
.+++|+|++. +.+++|+|+ +.+||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~~~~~~y~~~--------------~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~ 68 (255)
T cd03236 4 DEPVHRYGPN--------------SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILD 68 (255)
T ss_pred cCcceeecCc--------------chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhh
Confidence 3678899542 149999994 999999999999999999999999999999999996
Q ss_pred -EcCEecCCcccHHHhh---cceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 480 -IYGFSIRSSVSMTNIQ---KSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 480 -i~g~~i~~~~~~~~~~---~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++|.++.+. ..+.+ ..+++.+|+..+++. ++.+++...
T Consensus 69 ~~~g~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~ 110 (255)
T cd03236 69 EFRGSELQNY--FTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGEL 110 (255)
T ss_pred hccCchhhhh--hHHhhhcccceeeecchhccCch-HHHHHHHHH
Confidence 778776321 12222 247999999888874 777777654
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=148.95 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=78.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++++++.|+++ ..++++|+++.+|+++||+|+|||||||||++|+|...|++|+|...+.
T Consensus 3 ~i~~~~ls~~~g~~---------------~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAYGDR---------------PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEeeCCc---------------eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--
Confidence 58999999999654 6999999999999999999999999999999999999999999987541
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
-++||.+|+..+.+..||.+.+.-
T Consensus 66 ----------~~v~~l~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 66 ----------LRVGYLSQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred ----------ceEEEeCCCCCcCCCccHHHHHHh
Confidence 249999999999999999997654
No 354
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.46 E-value=7.1e-14 Score=118.91 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=62.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
.|+++++|++++||+++|+||||||||||++++. +|++.++|.|+.. .+.++.++..+++||+ +++ -|++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~-~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE-IREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH-hhhhhcCCEEEEechh--cch-hhHH
Confidence 6999999999999999999999999999999986 7999999999842 2233456667888887 444 4899
Q ss_pred HHHHH
Q 009374 515 EHLHL 519 (536)
Q Consensus 515 e~L~~ 519 (536)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.45 E-value=2.1e-13 Score=152.79 Aligned_cols=62 Identities=26% Similarity=0.452 Sum_probs=58.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
.++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~i~~ls~~~~~~---------------~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSFSDA---------------PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEeCCc---------------eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 58999999999653 599999999999999999999999999999999999999999999986
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.44 E-value=2.4e-13 Score=164.96 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=78.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++.. ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~~-------------~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDL-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCCCC-------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---
Confidence 699999999996431 2599999999999999999999999999999999999999999999876
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++|||||++.+++ .|++||+.+.
T Consensus 700 -----------~i~yv~Q~~~l~~-~Ti~eNI~~g 722 (1522)
T TIGR00957 700 -----------SVAYVPQQAWIQN-DSLRENILFG 722 (1522)
T ss_pred -----------EEEEEcCCccccC-CcHHHHhhcC
Confidence 3899999999875 6999999875
No 357
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.44 E-value=6.8e-14 Score=143.05 Aligned_cols=271 Identities=22% Similarity=0.292 Sum_probs=37.0
Q ss_pred eeecCCHHHHHHHHHcCCCcceEEEEEecCCCC-------eeEEEEEEccccccCCCCCCCCccchhhHHHHHHHHHHHH
Q 009374 14 VMSFRTAAEVDDWLYSNPMRCPGALHFVDRNAT-------TISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIAR 86 (536)
Q Consensus 14 ~~~f~s~~~~~~~~~~~~~~~~~av~F~~~~~~-------~~~Y~i~~n~~~~~~~~~~~~~~~~~~~~lq~ai~~ai~~ 86 (536)
...++|++++++.+.++ ...+++++++.... ..++++.+|.... .....++.++++ +.+
T Consensus 60 ~~~~~~~~~~~~~~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~-l~~ 125 (344)
T PF12698_consen 60 VVEYDSEEEAKDALKNG--KIDAIIVIPKNFSQDLLSSGESPNITVYINSSNP-----------HSSQIIQNALSS-LLQ 125 (344)
T ss_dssp EEECS-HHHHHHHHHHH--T-SEEEEE-TTCCCHCH-TT--ECCEEEESSSSH-----------HHHHHHHHHHHH-HHH
T ss_pred eeeeCCHHHHHHHHHhC--CCcEEEEcCccccccccccCCcceEEEEeecccc-----------hhhhhhhccccc-cch
Confidence 56899999999988765 34567787655432 2234444443221 111344555555 555
Q ss_pred HHhCCC----C---cceeeeeeccCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhCcChHHH
Q 009374 87 SLVGDP----N---FSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAY 159 (536)
Q Consensus 87 ~~~~~~----~---~~~~~~~~~~p~p~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~iV~EKe~~~k~~m~~mGl~~~~y 159 (536)
...... . ...++..+..|.... ..+....+.+.+++...++++......+++|||+|+++.|+++|++...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~ 204 (344)
T PF12698_consen 126 QLNASSEGKSAIQSSNSPIPVESIPLSNP-SSSFASYLIPFILFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSY 204 (344)
T ss_dssp HHHHCCCGCCCCHHHT--EEEEEEEECCC-HHHCHTT-------------------------------------------
T ss_pred hhhhhhhhhhhhccccccccccccccccc-cccccccccccchhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHH
Confidence 433211 0 112223333322111 11222222232222223333333455689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 009374 160 WLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFL 239 (536)
Q Consensus 160 Wls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~~~S~fF~~~~~a~~~~~~~~~~~~~ 239 (536)
|+++++.+++..++.+++++++ +++...+...++..+++++++|+++.+++++++|.+|++.+.+..++.++.+....
T Consensus 205 ~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 282 (344)
T PF12698_consen 205 WLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSF 282 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988887655543 34421233335667778899999999999999999999998876544333321111
Q ss_pred HHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHHHhcCCCCCccccccCCccCCCCCccccchHHHHHHHHHHHH
Q 009374 240 TQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATF 319 (536)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (536)
.... .++ .+..+..++.+.+++|++.+..++..+.... |.. ....+.++++.+
T Consensus 283 ~~~~---~~~-~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~---------~~~--------------~~~~~~~l~~~~ 335 (344)
T PF12698_consen 283 LSGG---FFP-LSSLPSFLQWISSFLPFYWFIQGLRNIIYGD---------WSE--------------IWISLIILLLFA 335 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH---HHh-HHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------HHH--------------HHHHHHHHHHHH
Confidence 1000 011 1122345677888999998888877664210 111 112245677788
Q ss_pred HHHHHHHHH
Q 009374 320 FVWFILAIY 328 (536)
Q Consensus 320 ~ly~lL~~y 328 (536)
++|+++++|
T Consensus 336 ~v~~~l~~~ 344 (344)
T PF12698_consen 336 VVYLLLAIL 344 (344)
T ss_dssp ---------
T ss_pred HHHHHHHhC
Confidence 888888876
No 358
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.42 E-value=8.4e-13 Score=133.63 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=103.0
Q ss_pred CCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
....++.++++..|+-+.. ...+....+.|||++||++++||.+||+|.+||||||+=.+|.++++++ |+|.++|
T Consensus 273 ~~~ll~~~~v~v~f~i~~g----~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G 347 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGG----FLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDG 347 (534)
T ss_pred CCceEEecceEEEEecCCc----cccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECC
Confidence 3457899999999986532 1122334578999999999999999999999999999999999999876 9999999
Q ss_pred EecCC--cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcC--CChHhHhh
Q 009374 483 FSIRS--SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKG--LPLDSIKS 533 (536)
Q Consensus 483 ~~i~~--~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg--~~~~~~~~ 533 (536)
+++.. ..++...|+++-+|+|++ .|-|.|||.|-+.-...+++ .++.+.++
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~ 404 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ 404 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHH
Confidence 99963 345677899999999985 78999999999998888775 44444443
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=99.39 E-value=2e-13 Score=150.96 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=65.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE-----------EcCEecCCcc-cHHHhhcceEEEc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-----------IYGFSIRSSV-SMTNIQKSIGVCP 502 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~-----------i~g~~i~~~~-~~~~~~~~ig~~p 502 (536)
.+|++++ .+++||++||+||||||||||+++|+|+++|++|+|. ++|.++.... .....+..+++.|
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 166 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP 166 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence 5999999 9999999999999999999999999999999999997 8898873110 0111123467777
Q ss_pred CCCCCCCCC---CHHHHHHH
Q 009374 503 QFNILWDAL---SGEEHLHL 519 (536)
Q Consensus 503 Q~~~l~~~l---Tv~e~L~~ 519 (536)
|.....+.+ ||+|+|..
T Consensus 167 q~~~~~p~~~~~tv~e~l~~ 186 (590)
T PRK13409 167 QYVDLIPKVFKGKVRELLKK 186 (590)
T ss_pred cchhhhhhhhcchHHHHHHh
Confidence 765554433 99999864
No 360
>PLN03232 ABC transporter C family member; Provisional
Probab=99.38 E-value=6.7e-13 Score=160.92 Aligned_cols=90 Identities=20% Similarity=0.331 Sum_probs=78.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|+++. +..+++|+||++++||.++++|++|||||||+++|.|+++|++|.+.
T Consensus 614 ~I~~~~vsF~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------ 675 (1495)
T PLN03232 614 AISIKNGYFSWDSKT------------SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------ 675 (1495)
T ss_pred cEEEEeeEEEcCCCC------------CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------
Confidence 699999999997531 12589999999999999999999999999999999999999998763
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
..|+.+|||||++.+++. |++||+.+..
T Consensus 676 -------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~ 703 (1495)
T PLN03232 676 -------VIRGSVAYVPQVSWIFNA-TVRENILFGS 703 (1495)
T ss_pred -------EecCcEEEEcCccccccc-cHHHHhhcCC
Confidence 236689999999999976 9999999864
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.37 E-value=7.5e-13 Score=160.87 Aligned_cols=89 Identities=18% Similarity=0.375 Sum_probs=79.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc-cEEEEcCEe
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFS 484 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~-G~i~i~g~~ 484 (536)
.++++|+++.|++.. +..+++|+||++++||.++|+|++|||||||+++|.|+++|++ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSKA------------ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCCC------------CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----
Confidence 699999999997431 1258999999999999999999999999999999999999999 89874
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
|+++|||||++.+++. |+|||+.|..
T Consensus 678 ----------~~~Iayv~Q~p~Lfng-TIreNI~fg~ 703 (1622)
T PLN03130 678 ----------RGTVAYVPQVSWIFNA-TVRDNILFGS 703 (1622)
T ss_pred ----------cCeEEEEcCccccCCC-CHHHHHhCCC
Confidence 4569999999999975 9999999864
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.36 E-value=1.2e-12 Score=158.46 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=67.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+|||||++.+++. |++
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------~iayv~Q~~~l~~~-Ti~ 504 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQTSWIMPG-TIK 504 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------------EEEEEeCCCccCCc-cHH
Confidence 589999999999999999999999999999999999999999999987 38999999999985 999
Q ss_pred HHHHHHH
Q 009374 515 EHLHLFA 521 (536)
Q Consensus 515 e~L~~~~ 521 (536)
||+.|..
T Consensus 505 eNI~~g~ 511 (1490)
T TIGR01271 505 DNIIFGL 511 (1490)
T ss_pred HHHHhcc
Confidence 9999753
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=6.8e-13 Score=120.07 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=70.4
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
++.+++++|+|.|++. ..-+|+||++++||+.|++|.+|||||||+++|++-+.|++|+|...-.
T Consensus 4 ~PLL~V~~lsk~Yg~~---------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r 68 (258)
T COG4107 4 KPLLSVSGLSKLYGPG---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR 68 (258)
T ss_pred CcceeehhhhhhhCCC---------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence 3468999999999875 3678999999999999999999999999999999999999999987543
Q ss_pred e-----cCC--ccc-HHHhhcceEEEcCCCC
Q 009374 484 S-----IRS--SVS-MTNIQKSIGVCPQFNI 506 (536)
Q Consensus 484 ~-----i~~--~~~-~~~~~~~ig~~pQ~~~ 506 (536)
+ +-. ..+ ..-.|..=|++.|++.
T Consensus 69 ~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 69 DGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred CCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 2 111 111 1224567899999854
No 364
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.2e-13 Score=135.91 Aligned_cols=99 Identities=23% Similarity=0.393 Sum_probs=88.2
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..+...++++.|...+ +.++++||+++.|+.++++|++|+||||++++|-.++.+++|.|.++|+|
T Consensus 261 g~v~F~~V~F~y~~~r--------------~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qd 326 (497)
T COG5265 261 GAVAFINVSFAYDPRR--------------PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD 326 (497)
T ss_pred ceEEEEEEEeeccccc--------------hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchh
Confidence 3588999999997642 69999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
++.. ..+..|+.||++||+-+||.+ |...|+.+
T Consensus 327 ir~v-tq~slR~aIg~VPQDtvLFND-ti~yni~y 359 (497)
T COG5265 327 IRDV-TQQSLRRAIGIVPQDTVLFND-TIAYNIKY 359 (497)
T ss_pred HHHh-HHHHHHHHhCcCcccceehhh-hHHHHHhc
Confidence 9743 356789999999999999987 77777654
No 365
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.34 E-value=5.5e-13 Score=134.45 Aligned_cols=96 Identities=23% Similarity=0.376 Sum_probs=83.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++..|.... --|..+|++|++||++-|+|.|||||||+.+.|+|+++|++|+|++||.+
T Consensus 321 ~~lelrnvrfay~~~~--------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQDNA--------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCccc--------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc
Confidence 4699999999997531 36889999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
++. .+.++.|+...-++-+..||+.+=..|
T Consensus 387 V~~-e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 387 VSA-EQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred CCC-CCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 974 568889998888888888887764433
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.31 E-value=5.1e-12 Score=136.73 Aligned_cols=92 Identities=24% Similarity=0.283 Sum_probs=78.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++|++|.|++. +..++++||.|.+|+.+||+||||+||||||++|+|...|.+|+|.+.-
T Consensus 319 ~~vl~~~~~~~~y~~~--------------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~- 383 (530)
T COG0488 319 KLVLEFENVSKGYDGG--------------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE- 383 (530)
T ss_pred CeeEEEeccccccCCC--------------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-
Confidence 5679999999999653 2699999999999999999999999999999999999999999998642
Q ss_pred ecCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFA 521 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~ 521 (536)
. -.+||.+|+. .+.++.|+.|++.-..
T Consensus 384 ~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~ 411 (530)
T COG0488 384 T-----------VKIGYFDQHRDELDPDKTVLEELSEGF 411 (530)
T ss_pred c-----------eEEEEEEehhhhcCccCcHHHHHHhhC
Confidence 1 2599999996 5457889999886543
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.24 E-value=2.9e-12 Score=144.35 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=56.8
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc---ccCccEEEEc
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDALIY 481 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~---~pt~G~i~i~ 481 (536)
..|+++|++|.|++. .+++|+||+|.+||++||+|+||||||||+++|+|.. .|++|+|...
T Consensus 176 ~~I~i~nls~~y~~~---------------~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~ 240 (718)
T PLN03073 176 KDIHMENFSISVGGR---------------DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHV 240 (718)
T ss_pred eeEEEceEEEEeCCC---------------EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEE
Confidence 469999999999643 5999999999999999999999999999999999964 5788999755
Q ss_pred CEe
Q 009374 482 GFS 484 (536)
Q Consensus 482 g~~ 484 (536)
+++
T Consensus 241 ~Q~ 243 (718)
T PLN03073 241 EQE 243 (718)
T ss_pred ecc
Confidence 443
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.24 E-value=1.1e-11 Score=150.35 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=65.9
Q ss_pred cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCH
Q 009374 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSG 513 (536)
Q Consensus 434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv 513 (536)
+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+. +.+|||||++.+++ .|+
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l~~-~Tv 737 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWIMN-ATV 737 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCccCC-CcH
Confidence 359999999999999999999999999999999999999999999752 46999999999875 699
Q ss_pred HHHHHHH
Q 009374 514 EEHLHLF 520 (536)
Q Consensus 514 ~e~L~~~ 520 (536)
+||+.++
T Consensus 738 ~enI~~~ 744 (1560)
T PTZ00243 738 RGNILFF 744 (1560)
T ss_pred HHHHHcC
Confidence 9999884
No 369
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.19 E-value=6.3e-11 Score=120.22 Aligned_cols=121 Identities=21% Similarity=0.306 Sum_probs=95.2
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i 478 (536)
.+.++++||+..|.... +.+.||+++||++++||.++|+|.+|||||-+.+.+.|+++. -+|+|
T Consensus 4 ~~lL~v~nLsV~f~~~~-----------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i 72 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-----------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72 (534)
T ss_pred CcceeeeccEEEEecCC-----------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee
Confidence 34689999999997532 245799999999999999999999999999999999999864 35899
Q ss_pred EEcCEecCC--cccHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHH-HHhcCCChHhHhhhh
Q 009374 479 LIYGFSIRS--SVSMTNIQ-KSIGVCPQFN--ILWDALSGEEHLHLF-ANIKGLPLDSIKSVC 535 (536)
Q Consensus 479 ~i~g~~i~~--~~~~~~~~-~~ig~~pQ~~--~l~~~lTv~e~L~~~-~~lkg~~~~~~~~~v 535 (536)
.++|.|+-. ..+++.+| .+||+++|++ .|.|-.|+.+.+.-. ..-+|+++++.++++
T Consensus 73 ~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~ 135 (534)
T COG4172 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARA 135 (534)
T ss_pred EEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999853 23345555 4699999996 577888888877554 444688877766543
No 370
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.18 E-value=2.4e-11 Score=113.89 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=50.0
Q ss_pred cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcC
Q 009374 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (536)
Q Consensus 434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ 503 (536)
+.|++|+||++++||+++|+||||||||||++++. +++|++.++|..- . ..++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~--~----~~~~~~~~~~q 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP--K----FSRNKLIFIDQ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc--c----cccccEEEEhH
Confidence 47999999999999999999999999999999985 3789999987632 1 11345889888
No 371
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.15 E-value=1e-10 Score=136.54 Aligned_cols=92 Identities=23% Similarity=0.386 Sum_probs=81.0
Q ss_pred CCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
.+.+++++|.+....+.. +...|+|+||+|++||.+|++|+-|||||+|+.+|.|..+..+|++.++|
T Consensus 515 ~~~~i~i~~~sfsW~~~~------------~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g 582 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSES------------PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG 582 (1381)
T ss_pred CCceEEEeeeeEecCCCC------------CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence 356799999999886521 22489999999999999999999999999999999999999999999987
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
. ++||||.+-++.. |+|||+.|..
T Consensus 583 s--------------iaYv~Q~pWI~ng-TvreNILFG~ 606 (1381)
T KOG0054|consen 583 S--------------VAYVPQQPWIQNG-TVRENILFGS 606 (1381)
T ss_pred e--------------EEEeccccHhhCC-cHHHhhhcCc
Confidence 2 8999999999876 9999998854
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.05 E-value=1.2e-10 Score=105.82 Aligned_cols=83 Identities=24% Similarity=0.301 Sum_probs=68.2
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
-+-.+|.++..||+.-|+||||||||||+-.++|+++ -+|+|.++|.++.. .+..+..++-+|..|+..-...|.|+.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~-~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEA-WSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhH-HhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 4667899999999999999999999999999999985 67999999999852 344455556688888876666778888
Q ss_pred HHHHH
Q 009374 516 HLHLF 520 (536)
Q Consensus 516 ~L~~~ 520 (536)
.|.++
T Consensus 92 YL~L~ 96 (248)
T COG4138 92 YLTLH 96 (248)
T ss_pred hhhhc
Confidence 77664
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.04 E-value=1.7e-10 Score=113.91 Aligned_cols=87 Identities=15% Similarity=0.277 Sum_probs=61.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc----------------CccccCcc--------EEEEcCEecCC--c
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT----------------GITPVTGG--------DALIYGFSIRS--S 488 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~----------------g~~~pt~G--------~i~i~g~~i~~--~ 488 (536)
.++++++ |++++|+|||||||||++++|+ +++.+++| ++.+++.+-.. .
T Consensus 16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~ 90 (243)
T cd03272 16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID 90 (243)
T ss_pred cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence 5788876 8999999999999999999997 55566666 55555532110 1
Q ss_pred ccHHHhhcceEEEcCCCCCCC-CCCHHHHHHHHHHhcCCC
Q 009374 489 VSMTNIQKSIGVCPQFNILWD-ALSGEEHLHLFANIKGLP 527 (536)
Q Consensus 489 ~~~~~~~~~ig~~pQ~~~l~~-~lTv~e~L~~~~~lkg~~ 527 (536)
.+...+++.+|++||+..+++ .+|..|...+...+ |++
T Consensus 91 ~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~ 129 (243)
T cd03272 91 KEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFS 129 (243)
T ss_pred CCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCC
Confidence 112245778999999988887 46777766666554 554
No 374
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.99 E-value=2.2e-11 Score=117.81 Aligned_cols=81 Identities=19% Similarity=0.377 Sum_probs=64.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|.. .|++. .+++++++ +++|++|||||||||++++|. .+.|.+.
T Consensus 5 ~l~l~nfk-~~~~~---------------~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~ 53 (212)
T cd03274 5 KLVLENFK-SYAGE---------------QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA 53 (212)
T ss_pred EEEEECcc-cCCCC---------------eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH
Confidence 36777765 67543 58999987 899999999999999999996 3455443
Q ss_pred CCcccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 486 RSSVSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 486 ~~~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
. ..+ +++|+++|+..+.+.+|++|++.+++..
T Consensus 54 ~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T cd03274 54 S------KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEI 86 (212)
T ss_pred H------HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeC
Confidence 1 223 5799999999999999999999888764
No 375
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.96 E-value=3.7e-10 Score=118.74 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=53.4
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEecCCc--ccHHHhhcceEEEcCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSIRSS--VSMTNIQKSIGVCPQF 504 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~i~~~--~~~~~~~~~ig~~pQ~ 504 (536)
.||+++|+++++||+++|+|||||||||+++ .|+..|++| +|.++|.++... .+++..| +++|.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR----~VFQ~ 86 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD----EIFDG 86 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH----HHHHh
Confidence 5899999999999999999999999999999 778888888 799999998532 2334444 67775
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.91 E-value=4.9e-10 Score=107.18 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=53.2
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc---------cEEEEcCEecCCcccHHHhhcceEEEcCCCCCC
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---------GDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW 508 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~---------G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~ 508 (536)
+++++++++| +++|+|||||||||++++|+|+.++.. |++.++|.++.. ...++.+|++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK----PANFAEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC----CCceEEEEEEEEcCCCc
Confidence 6789999999 999999999999999999999987653 457777766531 12356799999988765
No 377
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.88 E-value=1.8e-09 Score=113.82 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=70.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE---EEcCEecCCc-----ccHHHhhcceEEEcCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA---LIYGFSIRSS-----VSMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i---~i~g~~i~~~-----~~~~~~~~~ig~~pQ~~~ 506 (536)
.|++++ +.+.+||+++|+|+||+|||||+++|+|..+++.+.+ -.+|.++... .+....|..++++||+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 699999 9999999999999999999999999999998886433 2333333210 000123557999999999
Q ss_pred CCCCCCHHHHHHHHHHhcC
Q 009374 507 LWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 507 l~~~lTv~e~L~~~~~lkg 525 (536)
.+..+++.|++...+...+
T Consensus 223 ~~~rl~a~e~a~~iAEyfr 241 (434)
T PRK07196 223 PLMRIKATELCHAIATYYR 241 (434)
T ss_pred hhhhHHHHHHHHHHHHHhh
Confidence 9999999999988887653
No 378
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=1.8e-09 Score=123.83 Aligned_cols=90 Identities=23% Similarity=0.384 Sum_probs=79.4
Q ss_pred CcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc---CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCC
Q 009374 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD 509 (536)
Q Consensus 433 ~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p---t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~ 509 (536)
....++|+|.-+++||.+-+|||.||||||+++.|+|-++- ..|+|..+|++... ... ++.++||+|+|..++
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e---~~~-~~~~aY~~e~DvH~p 202 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKE---FVP-KKTVAYNSEQDVHFP 202 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccc---ccc-CceEEeccccccccc
Confidence 34699999999999999999999999999999999998753 35699999998742 222 778999999999999
Q ss_pred CCCHHHHHHHHHHhcCC
Q 009374 510 ALSGEEHLHLFANIKGL 526 (536)
Q Consensus 510 ~lTv~e~L~~~~~lkg~ 526 (536)
+|||+|.|.|-++.||.
T Consensus 203 ~lTVreTldFa~rck~~ 219 (1391)
T KOG0065|consen 203 ELTVRETLDFAARCKGP 219 (1391)
T ss_pred eeEEeehhhHHHhccCC
Confidence 99999999999999875
No 379
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.1e-08 Score=108.84 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=78.5
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCC---CCCCCCCC
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQF---NILWDALS 512 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~---~~l~~~lT 512 (536)
.++|+||++++|||+||-|-=|||+|-+++.|-|..++++|+|.++|+++......+.++..+||||-+ +.++..++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 589999999999999999999999999999999999999999999999886555567788999999986 78999999
Q ss_pred HHHHHHHH
Q 009374 513 GEEHLHLF 520 (536)
Q Consensus 513 v~e~L~~~ 520 (536)
++||+.+.
T Consensus 354 I~~Ni~l~ 361 (500)
T COG1129 354 IAENITLA 361 (500)
T ss_pred HHHheehH
Confidence 99999887
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.84 E-value=2.3e-08 Score=104.50 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=87.9
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...+++++|+..-.. ...+|+++||+|++|||+|+-|-.|-|-+.|+..|+|+.+|.+|+|.++|+
T Consensus 255 ~~vL~V~~L~v~~~~--------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~ 320 (501)
T COG3845 255 EVVLEVEDLSVKDRR--------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK 320 (501)
T ss_pred CeEEEEeeeEeecCC--------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCE
Confidence 457899999876532 236999999999999999999999999999999999999999999999999
Q ss_pred ec-CCcccHHHhhcceEEEcCC---CCCCCCCCHHHHHHHHHH
Q 009374 484 SI-RSSVSMTNIQKSIGVCPQF---NILWDALSGEEHLHLFAN 522 (536)
Q Consensus 484 ~i-~~~~~~~~~~~~ig~~pQ~---~~l~~~lTv~e~L~~~~~ 522 (536)
++ ...+..+..+..+||+|.+ ..+.+++|+.||+.+...
T Consensus 321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~ 363 (501)
T COG3845 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363 (501)
T ss_pred eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhc
Confidence 97 3222333445679999997 588999999999988543
No 381
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=108.00 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=85.6
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..+++++++..-+... ...++|+||+|++|+-+-+.||||+|||+|+|+++|+-+.++|++.-...
T Consensus 431 Dn~i~~e~v~l~tPt~g-------------~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~ 497 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNG-------------DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD 497 (659)
T ss_pred cceEEeeeeeecCCCCC-------------ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc
Confidence 46899999998877531 25899999999999999999999999999999999999999999875432
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH-----HHhcCCChHhHhhh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF-----ANIKGLPLDSIKSV 534 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~-----~~lkg~~~~~~~~~ 534 (536)
.- -+.+=|+||.+..-.. |.||.+.+. ..-++.+.+++.+.
T Consensus 498 ~~---------~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~ 543 (659)
T KOG0060|consen 498 GG---------PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRI 543 (659)
T ss_pred CC---------CCceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHH
Confidence 11 1458899999876555 899998876 34455555555443
No 382
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.76 E-value=1.5e-08 Score=94.52 Aligned_cols=69 Identities=28% Similarity=0.394 Sum_probs=62.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+.+|+++++++.|+... +.+-|.|++++.|.-.-|+|.|||||||++++|+|-.-.-.|.|.+.|+
T Consensus 11 ~~aievsgl~f~y~~~d--------------P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgr 76 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--------------PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGR 76 (291)
T ss_pred cceEEEeccEEecccCC--------------ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCc
Confidence 45899999999998752 6899999999999999999999999999999999988777799999998
Q ss_pred ecC
Q 009374 484 SIR 486 (536)
Q Consensus 484 ~i~ 486 (536)
+--
T Consensus 77 saF 79 (291)
T KOG2355|consen 77 SAF 79 (291)
T ss_pred Ccc
Confidence 753
No 383
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.76 E-value=5.9e-09 Score=104.12 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=56.8
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH 516 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~ 516 (536)
+-++++|+|||||||++++|+|+++|++|++.++|+++....+..++.+.++++||++ +...++|.|+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 6789999999999999999999999999999999999853233456667789999976 4567777664
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.71 E-value=8.3e-09 Score=108.50 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=58.8
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.+.+.|+++.|.+.. ...++++|.+..++-++++||||+||||++++++|.+.|+.|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~~~--------------~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--------------MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCCcc--------------hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence 56789999999997642 4899999999999999999999999999999999999999999865443
No 385
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.69 E-value=4.3e-08 Score=103.58 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=69.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC-
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG- 482 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g- 482 (536)
...++.+++++.|... ..+++.++ .+.+||+++|+|+||+|||||+++|+++.+|+.|.+.+.|
T Consensus 137 p~~~~r~~v~~~l~TG--------------i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe 201 (450)
T PRK06002 137 PPAMTRARVETGLRTG--------------VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE 201 (450)
T ss_pred CCCeEeecceEEcCCC--------------cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence 4468899999999643 25899996 9999999999999999999999999999999999988864
Q ss_pred --EecCCc--ccHHHh-hcceEEEcCCCC
Q 009374 483 --FSIRSS--VSMTNI-QKSIGVCPQFNI 506 (536)
Q Consensus 483 --~~i~~~--~~~~~~-~~~ig~~pQ~~~ 506 (536)
.++... ..+... ++.+++++|.|.
T Consensus 202 rgrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 202 RGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 554211 112222 357999999864
No 386
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.67 E-value=6e-08 Score=105.24 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=83.8
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++|++..-++.. ..|+++++++++||-+-+.|+|||||||++|.|+|+-|--+|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p~~~--------------~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~- 454 (604)
T COG4178 390 DHGITLENLSLRTPDGQ--------------TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA- 454 (604)
T ss_pred cceeEEeeeeEECCCCC--------------eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-
Confidence 35799999999887641 689999999999999999999999999999999999999888876431
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
...+-|+||.+.+-.. |.||-|.+.......+.+++.+
T Consensus 455 -----------~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 455 -----------DSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred -----------CCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHH
Confidence 2347899999987666 9999988876554455555443
No 387
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.67 E-value=2.7e-09 Score=102.17 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=52.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
.+.+|++++. |++++|+|||||||||++++|+|... +...|.++.. + ++.+|.+.++..+|++
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a--------~--~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA--------S--SFELPPVKIFTSIRVS 77 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec--------C--ccCcccceEEEeccch
Confidence 4778887776 79999999999999999999988553 1235555521 1 2567788999999999
Q ss_pred HHHHH
Q 009374 515 EHLHL 519 (536)
Q Consensus 515 e~L~~ 519 (536)
|++.+
T Consensus 78 d~l~~ 82 (199)
T cd03283 78 DDLRD 82 (199)
T ss_pred hcccc
Confidence 99876
No 388
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.64 E-value=7e-09 Score=99.75 Aligned_cols=74 Identities=24% Similarity=0.255 Sum_probs=52.7
Q ss_pred eEEEecCcEEEEeCCCCCchhHHHHhH----cCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC-----CCCCCC
Q 009374 441 WVNIAKDQLFCLLGPNGAGKTTTISCL----TGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN-----ILWDAL 511 (536)
Q Consensus 441 sl~v~~gei~~LlG~NGaGKSTll~~l----~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~-----~l~~~l 511 (536)
++++.+| +++|+|||||||||++++| .|..+|++|.+.-+...+. ....+..+++++|++ .+...+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~----~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR----EGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh----CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 3556666 9999999999999999999 5999998887762221221 123456799999998 444555
Q ss_pred CHHHHHHH
Q 009374 512 SGEEHLHL 519 (536)
Q Consensus 512 Tv~e~L~~ 519 (536)
|+.|++.+
T Consensus 92 ~~~~~~~~ 99 (204)
T cd03240 92 AILENVIF 99 (204)
T ss_pred hHhhceee
Confidence 66776643
No 389
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.64 E-value=2.8e-08 Score=94.17 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=63.3
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCC--CCCCCCCCH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQF--NILWDALSG 513 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~--~~l~~~lTv 513 (536)
..+=+.+.+++|+.+++.|+||||||||+++|+|+.+|+.|.+.+.+..-. .. ..+..++++.|. +...+.+|.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAEL---QL-PHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCcccc---CC-CCCCEEEEEEecCCCCCCCccCH
Confidence 445566779999999999999999999999999999999999999774321 11 113345666554 445678899
Q ss_pred HHHHHHHHHh
Q 009374 514 EEHLHLFANI 523 (536)
Q Consensus 514 ~e~L~~~~~l 523 (536)
.|.+....+.
T Consensus 90 ~~~l~~~lR~ 99 (186)
T cd01130 90 ADLLRSALRM 99 (186)
T ss_pred HHHHHHHhcc
Confidence 9988876654
No 390
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.63 E-value=1.9e-08 Score=107.60 Aligned_cols=73 Identities=25% Similarity=0.469 Sum_probs=59.6
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
++++.+..+.+|++++|+||||+|||||+..|++.+....|. +++|++.++. ...++.|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~------------------~kV~LI~~Dt---~RigA~E 303 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA------------------SKVALLTTDS---YRIGGHE 303 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC------------------CeEEEEeCCc---cchhHHH
Confidence 566677778899999999999999999999999987666553 1467777764 4578999
Q ss_pred HHHHHHHhcCCChH
Q 009374 516 HLHLFANIKGLPLD 529 (536)
Q Consensus 516 ~L~~~~~lkg~~~~ 529 (536)
+|.+|+++.|++..
T Consensus 304 QLr~~AeilGVpv~ 317 (484)
T PRK06995 304 QLRIYGKILGVPVH 317 (484)
T ss_pred HHHHHHHHhCCCee
Confidence 99999999988753
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.58 E-value=8.8e-08 Score=99.01 Aligned_cols=84 Identities=25% Similarity=0.257 Sum_probs=65.8
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++..+++|.|++- .|+-=.=+++.||+.|++||||-||||+.++|+|.++|++|. ..+
T Consensus 341 ~lv~y~~~~k~~g~F----------------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~ 400 (591)
T COG1245 341 TLVEYPDLKKTYGDF----------------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED 400 (591)
T ss_pred eeeecchheeecCce----------------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc
Confidence 357788888888752 344344568899999999999999999999999999999998 222
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
-++.|=||.-.--.+.||++-|.-
T Consensus 401 -----------~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 401 -----------LKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred -----------ceEeecceeecCCCCCcHHHHHHH
Confidence 248899998655567899988754
No 392
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.55 E-value=1.4e-08 Score=100.86 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=53.4
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCE-ecCCcccH-HHhhcceEEEcCCC---------CCCCCCCHH
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGF-SIRSSVSM-TNIQKSIGVCPQFN---------ILWDALSGE 514 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~-~i~~~~~~-~~~~~~ig~~pQ~~---------~l~~~lTv~ 514 (536)
..+++|+|||||||||++++|.+++.++ .|++...|. ++...... ...+..+++.+|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 467877775 43111111 11234799999984 456788888
Q ss_pred HHHHH
Q 009374 515 EHLHL 519 (536)
Q Consensus 515 e~L~~ 519 (536)
+++..
T Consensus 105 r~I~~ 109 (251)
T cd03273 105 RQIVL 109 (251)
T ss_pred EEEEc
Confidence 87754
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=7.7e-08 Score=98.61 Aligned_cols=102 Identities=25% Similarity=0.388 Sum_probs=77.9
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.+-++++++.|++.+ +..++++|.|.-..-++|+||||.||||++++|+|-+.|+.|+..=+
T Consensus 584 PPvLGlH~VtFgy~gqk--------------pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQK--------------PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCCCCC--------------chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc--
Confidence 35688999999998752 68899999999999999999999999999999999999999885421
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH-HHHHHHhcCCChHhHhh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH-LHLFANIKGLPLDSIKS 533 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~-L~~~~~lkg~~~~~~~~ 533 (536)
-|-+||+.-|+.. +.|+.+|. .++..+...+|.++.++
T Consensus 648 ----------hrL~iG~FdQh~~--E~L~~Eetp~EyLqr~FNlpyq~ARK 686 (807)
T KOG0066|consen 648 ----------HRLRIGWFDQHAN--EALNGEETPVEYLQRKFNLPYQEARK 686 (807)
T ss_pred ----------ceeeeechhhhhH--HhhccccCHHHHHHHhcCCChHHHHH
Confidence 2456999999853 33444442 23445556666665543
No 394
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.53 E-value=5.3e-08 Score=95.22 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.9
Q ss_pred cceeeceeEEEecCcEEEEeCCCCCchhHHH-HhH
Q 009374 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI-SCL 467 (536)
Q Consensus 434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll-~~l 467 (536)
+.+|+++||++++||++||+|+||||||||+ ..+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999999999999999999995 444
No 395
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.41 E-value=4.5e-07 Score=95.23 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=74.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.|.++|+-..-+... .+|..++|+|.+|--+-++||||||||+++|+|.|+-|.-.|...+-
T Consensus 481 gI~lenIpvItP~~~--------------vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P---- 542 (728)
T KOG0064|consen 481 GIILENIPVITPAGD--------------VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP---- 542 (728)
T ss_pred ceEEecCceeccCcc--------------eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC----
Confidence 577777766655431 58999999999999999999999999999999999999876665431
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-----HhcCCChHhHhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-----NIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-----~lkg~~~~~~~~~ 534 (536)
. +.+|=|.||.+..- .=|.||.+-+.. +=||.+.++..+.
T Consensus 543 ---~-----~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~i 587 (728)
T KOG0064|consen 543 ---R-----PNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAI 587 (728)
T ss_pred ---C-----CcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHH
Confidence 1 34599999987654 335666654421 2357776665543
No 396
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.39 E-value=3.5e-07 Score=89.59 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=56.4
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccCccE----EEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGD----ALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~----i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
..++||.|+||||||||.+.|++++++.+|. +..++... ....++..|++++.+. .+.+++.+.+.++..
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~-----~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL-----DNAVLDAHGLRPRKGA-PETFDVAGLAALLRR 106 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC-----CHHHHHhcccccccCC-CCCCCHHHHHHHHHH
Confidence 4799999999999999999999999999998 44444332 1223445688887554 478899999999888
Q ss_pred hcC
Q 009374 523 IKG 525 (536)
Q Consensus 523 lkg 525 (536)
++.
T Consensus 107 l~~ 109 (229)
T PRK09270 107 LRA 109 (229)
T ss_pred HHc
Confidence 773
No 397
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.39 E-value=1.6e-07 Score=90.92 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=52.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEe-cCcEEEEeCCCCCchhHHHHhHcC-ccccCccEEEEcC-
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA-KDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGDALIYG- 482 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~-~gei~~LlG~NGaGKSTll~~l~g-~~~pt~G~i~i~g- 482 (536)
.++++|+. .|.+ -++++|... +|++++|+|||||||||++++|++ +..+..+....+.
T Consensus 5 ~i~l~nf~-~y~~------------------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~ 65 (213)
T cd03279 5 KLELKNFG-PFRE------------------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENL 65 (213)
T ss_pred EEEEECCc-CcCC------------------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhH
Confidence 47788876 6633 145566544 599999999999999999999996 4444445444321
Q ss_pred EecCCcccHHHhhcceEEEcCCCCC
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNIL 507 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l 507 (536)
.+. ....+.+..+++.+|++..
T Consensus 66 ~~~---~~~~~~~~~v~~~f~~~~~ 87 (213)
T cd03279 66 RSV---FAPGEDTAEVSFTFQLGGK 87 (213)
T ss_pred HHH---hcCCCccEEEEEEEEECCe
Confidence 111 1112345568999998643
No 398
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.38 E-value=4.5e-07 Score=96.46 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=58.2
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc-------ccHHHhhcceEEEcCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-------VSMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~-------~~~~~~~~~ig~~pQ~~~ 506 (536)
.++|++ +.+.+||+++|+|+||+|||||+++|+|..+|+.|.+.+.|++-+.. .+...+++.++++.+.|.
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 589999 99999999999999999999999999999999999999866543211 122346778999988643
No 399
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.37 E-value=3.1e-07 Score=91.45 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=63.4
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc--------Cc--cccCcc-----------EEEEcCEecCCc--cc-
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT--------GI--TPVTGG-----------DALIYGFSIRSS--VS- 490 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~--------g~--~~pt~G-----------~i~i~g~~i~~~--~~- 490 (536)
..|+|+|++++.|+.+++.|++|||||||++.+. +. ..|..+ -+.|+..+|... ..
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 5899999999999999999999999999998652 11 012111 366666665321 00
Q ss_pred ------HHHhhc----------------ceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 491 ------MTNIQK----------------SIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 491 ------~~~~~~----------------~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.+.+|+ .++|..+....+.+||+.|++.|++.+++
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~ 145 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK 145 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh
Confidence 122222 25566677777889999999999987654
No 400
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.37 E-value=2.5e-07 Score=86.89 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=52.2
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+||+++++|+|||||||++++|+|++.+ +.++|.++....+.++. ..|+.+|+...++.+++.++...-
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~--~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKM--SQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHH--hcCCCCCcccchHHHHHHHHHHHH
Confidence 5899999999999999999999999877 58899887422112222 357777776666778888887643
No 401
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.37 E-value=3.5e-07 Score=92.18 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=57.8
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccc--cCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~--pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
.++||.|+|||||||+.++|.+++. |++|+|.+-+.|--. .+ .+.++..|+. |.....+.+++.+.+.+..+++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~-~~-~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk~ 139 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL-HP-NQVLKERNLM-KKKGFPESYDMHRLVKFLSDLKS 139 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc-cc-HHHHHHcCCc-cccCCChhccHHHHHHHHHHHHC
Confidence 5899999999999999999999998 788988775554321 11 2233446654 77777889999999999998873
No 402
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.36 E-value=5.3e-07 Score=95.19 Aligned_cols=62 Identities=26% Similarity=0.448 Sum_probs=55.0
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i 480 (536)
...+++.++++.|.+. ..++|++|++.+||-+||+|+|||||||+|++|+|-..|..-++-+
T Consensus 73 s~dvk~~sls~s~~g~---------------~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~ 134 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV---------------ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF 134 (614)
T ss_pred cccceeeeeeeccCCc---------------eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence 4569999999999764 6999999999999999999999999999999999999887665543
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.25 E-value=9.5e-07 Score=90.53 Aligned_cols=76 Identities=21% Similarity=0.135 Sum_probs=58.7
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCccc---H--HHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVS---M--TNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~---~--~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
.+|++++++||||+|||||+..|++.+.+..|+|.+-+.|...... . ...++.+++++|.....+..++.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999999999988999998877632111 1 1235679999997666666677777654
Q ss_pred H
Q 009374 520 F 520 (536)
Q Consensus 520 ~ 520 (536)
.
T Consensus 192 ~ 192 (318)
T PRK10416 192 A 192 (318)
T ss_pred H
Confidence 3
No 404
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.22 E-value=1.3e-06 Score=82.79 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=54.5
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg 525 (536)
|++++|+|||||||||++++|++...+ .+.+.+..+... .....++.+++.+|+.. ..+.-...|+-.......|
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRP-ASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCc-cchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 789999999999999999999998865 577777766432 22334567889988721 1111122334445556667
Q ss_pred CChHhHhh
Q 009374 526 LPLDSIKS 533 (536)
Q Consensus 526 ~~~~~~~~ 533 (536)
.+. ++++
T Consensus 78 ~~~-~~~~ 84 (186)
T PRK10078 78 VGI-EIDL 84 (186)
T ss_pred CcH-HHHH
Confidence 776 3443
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.22 E-value=8.1e-07 Score=90.99 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=44.1
Q ss_pred CcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--------cccCccEEEEc
Q 009374 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIY 481 (536)
Q Consensus 433 ~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--------~~pt~G~i~i~ 481 (536)
+..+++|+||.+++|++.++.|++||||||+++||.|. ++|++|.|.+-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 34699999999999999999999999999999999986 46899988764
No 406
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.19 E-value=1.1e-06 Score=88.96 Aligned_cols=85 Identities=19% Similarity=0.161 Sum_probs=62.8
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHhhc-ceEEEcCCCCC---C-C
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQK-SIGVCPQFNIL---W-D 509 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~~~-~ig~~pQ~~~l---~-~ 509 (536)
+.+...+. +++++++|+||+|||||+|.|.|...++.|++.. .|...+ ++...++. ..|++.+.+.+ . .
T Consensus 153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT--~~~~~~~~~~~~~liDtPG~~~~~~~ 229 (287)
T cd01854 153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTT--THRELFPLPGGGLLIDTPGFREFGLL 229 (287)
T ss_pred HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCccc--ceEEEEEcCCCCEEEECCCCCccCCc
Confidence 34444444 5899999999999999999999999999999876 344432 12222322 36899999887 3 5
Q ss_pred CCCHHHHHHHHHHhcC
Q 009374 510 ALSGEEHLHLFANIKG 525 (536)
Q Consensus 510 ~lTv~e~L~~~~~lkg 525 (536)
.++..|.+..|..+.+
T Consensus 230 ~~~~~~~~~~f~~~~~ 245 (287)
T cd01854 230 HIDPEELAHYFPEFRE 245 (287)
T ss_pred cCCHHHHHHHhHHHHH
Confidence 7899999988887654
No 407
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.18 E-value=1.9e-06 Score=80.91 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=65.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc----cCccEEEEcC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIYG 482 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~----pt~G~i~i~g 482 (536)
+.++||+..+..+. +.++|||++|+++.+||+-||+|.+|||||-.-+.|+|..+ .|..+..+++
T Consensus 4 LDIrnL~IE~~Tsq-----------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~ 72 (330)
T COG4170 4 LDIRNLTIEFKTSQ-----------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD 72 (330)
T ss_pred ccccceEEEEecCC-----------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccccc
Confidence 55778888876542 34679999999999999999999999999999999999875 3445555555
Q ss_pred EecCCcc---cHHHhhcceEEEcCCCC
Q 009374 483 FSIRSSV---SMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 483 ~~i~~~~---~~~~~~~~ig~~pQ~~~ 506 (536)
.|+-..+ .++-+.+.+++.+|++.
T Consensus 73 idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 73 IDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred chhhcCChHHhhhhhccchhhhhcCch
Confidence 5542211 12234567889999863
No 408
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.09 E-value=3.6e-06 Score=86.08 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=45.4
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.++|++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+...|.+
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 599999 9999999999999999999999999999999999888776643
No 409
>PRK08149 ATP synthase SpaL; Validated
Probab=98.08 E-value=3.6e-06 Score=88.94 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=55.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc---cEEEEcCEecCCccc--HH-HhhcceEEEcCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIYGFSIRSSVS--MT-NIQKSIGVCPQF 504 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~---G~i~i~g~~i~~~~~--~~-~~~~~ig~~pQ~ 504 (536)
.|++++ +.+.+||+++|+|+||+|||||+++|++...++. |.|-.+|+++..-.+ .. ..+++++++...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 699999 9999999999999999999999999999999887 889899988742111 11 123567777665
No 410
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.07 E-value=4.2e-06 Score=88.55 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=55.1
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.++.+.+++.+... +.|+|++ +.+.+||.++|+|+||+||||++++|+|...++.|.+...|..
T Consensus 128 ~~~~r~~v~~~l~tG--------------i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG--------------IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC--------------ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 356677777777432 3699999 9999999999999999999999999999999999888776653
No 411
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.05 E-value=1.4e-06 Score=83.99 Aligned_cols=73 Identities=16% Similarity=-0.006 Sum_probs=46.3
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcccc-CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
++|+++||.|+|||||||+.+.|++++++ ..+.+..++.-.. . .....++..++.+|.+..++.....++|.-
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 77 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKD-Q-SHLEMAERKKTNFDHPDAFDNDLLYEHLKN 77 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccC-h-hhCCHHHhcCCCCCCccHhHHHHHHHHHHH
Confidence 57899999999999999999999999876 2233333332111 1 111223456777777655555444555543
No 412
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.05 E-value=3.7e-06 Score=80.55 Aligned_cols=42 Identities=24% Similarity=0.478 Sum_probs=35.9
Q ss_pred eeeceeEEEecCc-EEEEeCCCCCchhHHHHhHc--------CccccCccE
Q 009374 436 AIKGLWVNIAKDQ-LFCLLGPNGAGKTTTISCLT--------GITPVTGGD 477 (536)
Q Consensus 436 al~~lsl~v~~ge-i~~LlG~NGaGKSTll~~l~--------g~~~pt~G~ 477 (536)
.+-++|+++.+|+ +++|.||||+||||++++|+ |..-|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~ 66 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG 66 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc
Confidence 4667999999995 89999999999999999999 876665543
No 413
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=3.9e-06 Score=88.27 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=46.2
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
..-|.+.+.+..|+++ ..|++-++++..|.-+||+|+||+|||||||+|+.
T Consensus 78 ~~Di~~~~fdLa~G~k---------------~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK---------------ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeecch---------------hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3458888999999864 58999999999999999999999999999999987
No 414
>PRK01889 GTPase RsgA; Reviewed
Probab=98.03 E-value=3.3e-06 Score=88.08 Aligned_cols=79 Identities=24% Similarity=0.305 Sum_probs=61.1
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
-++.+.-.+++|++++++|+||+|||||++.|+|...++.|++.+++..... ...++.+++++|...+++. .+..
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~----tt~~~~l~~l~~~~~l~Dt-pG~~ 258 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH----TTTHRELHPLPSGGLLIDT-PGMR 258 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc----hhhhccEEEecCCCeecCC-Cchh
Confidence 3555666678999999999999999999999999999999999998754321 1235679999998877753 4454
Q ss_pred HHHH
Q 009374 516 HLHL 519 (536)
Q Consensus 516 ~L~~ 519 (536)
++.+
T Consensus 259 ~~~l 262 (356)
T PRK01889 259 ELQL 262 (356)
T ss_pred hhcc
Confidence 4444
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.01 E-value=3.3e-06 Score=81.93 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=50.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
.+.+|++++..+ ++++|.||||+||||+++++++..-.. + .|..+. ..+..++++.| ++..+++.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~vp------~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFVP------ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCeec------cccceecceee---EeccCCch
Confidence 488999999987 999999999999999999998754321 1 232321 11345777765 67888888
Q ss_pred HHHH
Q 009374 515 EHLH 518 (536)
Q Consensus 515 e~L~ 518 (536)
|++.
T Consensus 84 ~~ls 87 (216)
T cd03284 84 DDLA 87 (216)
T ss_pred hhhc
Confidence 8875
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.98 E-value=5.5e-06 Score=79.66 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=33.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
.+.+|+++++.+|++++|.||||+||||+++++++
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999983
No 417
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.97 E-value=1.3e-05 Score=85.31 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=57.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccH-HHh----hcceEEEcCCCCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM-TNI----QKSIGVCPQFNILWD 509 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~-~~~----~~~ig~~pQ~~~l~~ 509 (536)
.+++++ +.+.+||.++|+|+||+||||++++|+|..+|+.|.+...|.+-+...+. ++. ....+++.|.....+
T Consensus 134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p 212 (422)
T TIGR02546 134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRP 212 (422)
T ss_pred eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCC
Confidence 599999 99999999999999999999999999999999999987765433211111 111 123567778777666
Q ss_pred CC
Q 009374 510 AL 511 (536)
Q Consensus 510 ~l 511 (536)
.+
T Consensus 213 ~~ 214 (422)
T TIGR02546 213 SL 214 (422)
T ss_pred HH
Confidence 65
No 418
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.97 E-value=5.9e-06 Score=89.34 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=54.5
Q ss_pred eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++.++.. .+++++++.+..|+.++++|+||+||||+++.|.|+++|.+|+..+++..|
T Consensus 188 ~d~~~v~Gq~---------------~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQE---------------QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECcH---------------HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 4777777543 589999999999999999999999999999999999999999998887655
No 419
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.97 E-value=5.4e-06 Score=87.75 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=55.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc---cEEEEcCEecCCcc--cHHHhhcceEEEcCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIYGFSIRSSV--SMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~---G~i~i~g~~i~~~~--~~~~~~~~ig~~pQ~~~ 506 (536)
.|+|.+ +.+.+||+++|+|+||+||||++++|+|+.+|+. |.|-.+|.++.... ....-.+..+++.|...
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 478877 9999999999999999999999999999999986 89999998873210 01112245788888744
No 420
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.95 E-value=7.1e-06 Score=87.08 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=41.1
Q ss_pred cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc-cEEEEcC
Q 009374 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYG 482 (536)
Q Consensus 434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~-G~i~i~g 482 (536)
+.|+|++ +.+.+||.++|+|+||+||||++++|+|..++.+ |.+...|
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 3699998 9999999999999999999999999999985444 5566544
No 421
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=7.8e-06 Score=86.09 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=86.5
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.+++.++++.|..+. .....+++++++.-.-.+.+|+||+||||+++++.|...|++|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~~-------------y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-------------YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCCcc-------------hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-
Confidence 45789999999986541 1578999999999999999999999999999999999999999987653
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
|+++||-.|+-+-|-++.|-+--.+-+..-|.+++++++-
T Consensus 426 -----------r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~h 465 (582)
T KOG0062|consen 426 -----------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRH 465 (582)
T ss_pred -----------cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHH
Confidence 5679999999887777766665555555568888877654
No 422
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=7.1e-06 Score=85.45 Aligned_cols=74 Identities=26% Similarity=0.459 Sum_probs=54.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
.++++.++.+.+|++++|+||||+|||||+..|++......|. ++++++..+.. .....
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~------------------~~V~lit~D~~---R~ga~ 183 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA------------------SKVALLTTDSY---RIGGH 183 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------CeEEEEecccc---cccHH
Confidence 4678888889999999999999999999999999865322221 23555553322 23677
Q ss_pred HHHHHHHHhcCCChH
Q 009374 515 EHLHLFANIKGLPLD 529 (536)
Q Consensus 515 e~L~~~~~lkg~~~~ 529 (536)
|+|..|+++.|++..
T Consensus 184 EqL~~~a~~~gv~~~ 198 (374)
T PRK14722 184 EQLRIFGKILGVPVH 198 (374)
T ss_pred HHHHHHHHHcCCceE
Confidence 888888888887643
No 423
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.94 E-value=7.2e-06 Score=79.80 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=49.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCcccc--CccEEEE---cCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPV--TGGDALI---YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i---~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
++||.|+|||||||+.+.|.+.+.+ .+|++.+ +|+-. ... .++..|.. |.....+.+++...+....++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~----~~~-~~~~~~~~-~~~g~p~~~d~~~l~~~L~~l 74 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY----PNK-ELIERGLM-DRKGFPESYDMEALLKFLKDI 74 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC----cHH-HHHHhhhh-hcCCCcccCCHHHHHHHHHHH
Confidence 5799999999999999999999875 5566665 66532 111 22345555 544556777887777777777
Q ss_pred cC
Q 009374 524 KG 525 (536)
Q Consensus 524 kg 525 (536)
+.
T Consensus 75 ~~ 76 (220)
T cd02025 75 KS 76 (220)
T ss_pred HC
Confidence 63
No 424
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.93 E-value=1e-05 Score=85.90 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=46.2
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.+++++ +.+.+||+++|+|+||+||||++++++|...++.|.+...|..
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 599999 9999999999999999999999999999999999999888854
No 425
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.89 E-value=1.4e-05 Score=61.13 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=31.2
Q ss_pred eeceeEEEec-CcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374 437 IKGLWVNIAK-DQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (536)
Q Consensus 437 l~~lsl~v~~-gei~~LlG~NGaGKSTll~~l~g~~~pt~ 475 (536)
.++-++++.+ |.++.|.|+|||||||++.++.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4556677775 56999999999999999999987765543
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=1.3e-05 Score=89.97 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=36.0
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
++++.++.+.+|++++|+||||+|||||+..|++.+....|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 56777777888999999999999999999999998866655
No 427
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.85 E-value=1.6e-05 Score=84.05 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=45.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.|++ .++.+.+||.++|+|+||+|||||+++|++..+|+.|.+.+.|..-
T Consensus 129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 4776 6999999999999999999999999999999999999998888754
No 428
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=1.2e-05 Score=84.93 Aligned_cols=28 Identities=39% Similarity=0.697 Sum_probs=25.6
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+.+|++++|+||||+|||||++.|+|..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999863
No 429
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.84 E-value=1.5e-05 Score=85.06 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=45.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.++|++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|..
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 599999 9999999999999999999999999999999998877776654
No 430
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.84 E-value=2e-05 Score=83.32 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=56.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccH-------HHhhcceEEEcCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM-------TNIQKSIGVCPQFNI 506 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~-------~~~~~~ig~~pQ~~~ 506 (536)
.++|++ +.+.+||+++|+|+||+||||++++|++..+++.|.+...|...+...+. +..++.+-++.+.|.
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~ 203 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQ 203 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCC
Confidence 599999 99999999999999999999999999999999999988888654211110 113456778888753
No 431
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.84 E-value=2.1e-05 Score=83.27 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=54.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++.+.+++.|... ..++|++ +.+.+||.++|+|+||+||||++++|+|..+|+.|.+.+.|+..
T Consensus 130 ~~~r~~i~~~l~TG--------------iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg 194 (432)
T PRK06793 130 AFEREEITDVFETG--------------IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG 194 (432)
T ss_pred chheechhhccCCC--------------CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence 45666777777532 2589985 99999999999999999999999999999999999998877654
No 432
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.81 E-value=1.3e-05 Score=85.15 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=37.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt 474 (536)
.|+|++ +.+.+||.++|+|+||+|||||+++|+|...|+
T Consensus 157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 699999 999999999999999999999999999998776
No 433
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.81 E-value=3.7e-05 Score=89.09 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=30.8
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l 467 (536)
.|+|+|++|++||++||.|+||||||||++.+
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 69999999999999999999999999999876
No 434
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.80 E-value=1.6e-05 Score=76.29 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=27.5
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
-..++++.+|++++|.|||||||||++++|++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34456666899999999999999999999994
No 435
>PRK00098 GTPase RsgA; Reviewed
Probab=97.80 E-value=3.1e-05 Score=78.91 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=56.4
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHh-hcceEEEcCCCCCC----CCCCHHHHH
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNI-QKSIGVCPQFNILW----DALSGEEHL 517 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~-~~~ig~~pQ~~~l~----~~lTv~e~L 517 (536)
+|++++++|+||+|||||+|.|.|...+..|++.. .|...+. ..+.. ....|++...+.+. ..++..|-.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~--~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 240 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTT--HVELYDLPGGGLLIDTPGFSSFGLHDLEAEELE 240 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccc--cEEEEEcCCCcEEEECCCcCccCCCCCCHHHHH
Confidence 58999999999999999999999999999999986 4444321 11111 12467888888777 578887777
Q ss_pred HHHHHh
Q 009374 518 HLFANI 523 (536)
Q Consensus 518 ~~~~~l 523 (536)
..|..+
T Consensus 241 ~~f~~~ 246 (298)
T PRK00098 241 HYFPEF 246 (298)
T ss_pred HHHHHH
Confidence 766554
No 436
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.79 E-value=1.9e-05 Score=78.19 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=29.8
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~ 481 (536)
.+++|+|||||||||++.+|.++..+.+|++...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~ 56 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK 56 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence 4999999999999999999999998877776544
No 437
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.77 E-value=1.6e-05 Score=76.27 Aligned_cols=39 Identities=33% Similarity=0.577 Sum_probs=33.9
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccc------------cCccEEEEcCEec
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFSI 485 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~------------pt~G~i~i~g~~i 485 (536)
++|++++|+||+||||||++++|.+..+ |..|+ ++|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~ 53 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY 53 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence 5899999999999999999999999975 77787 567664
No 438
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.77 E-value=2.2e-05 Score=85.27 Aligned_cols=65 Identities=18% Similarity=0.095 Sum_probs=53.3
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
-++||.|+|||||||+.++|.+.. |..|.|.++|+.-. .+.+++.+|++.+++..++.|||.-..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~--------~~~i~~nfD~P~a~D~d~L~enL~~Lr 130 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS--------SRIIDGNFDDPRLTDYDTLLDNIHDLK 130 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc--------hhhhCccCCChhhcchhHHHHHHHHHh
Confidence 489999999999999999999997 57899999997521 123567889988898889999986544
No 439
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.76 E-value=2.1e-05 Score=76.48 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=39.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC-ccccCccEE
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGDA 478 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g-~~~pt~G~i 478 (536)
.+.+|+++++.+|++++|.||||+||||+++++++ .+.+..|..
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~ 63 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF 63 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 47899999999999999999999999999999999 566667753
No 440
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.76 E-value=3.2e-05 Score=81.84 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=44.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.++|.+ +.+.+||+++|+|+||+|||||+++|++..+|+.+.+...|..
T Consensus 126 ~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 126 RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 589999 9999999999999999999999999999999988776666654
No 441
>PRK05922 type III secretion system ATPase; Validated
Probab=97.75 E-value=3.2e-05 Score=81.87 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=44.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.++|.+ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|..
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 588887 9999999999999999999999999999999999988666643
No 442
>PLN02796 D-glycerate 3-kinase
Probab=97.75 E-value=9.7e-06 Score=83.09 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=43.1
Q ss_pred eeeceeEEE---ecCcE-----EEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecC
Q 009374 436 AIKGLWVNI---AKDQL-----FCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR 486 (536)
Q Consensus 436 al~~lsl~v---~~gei-----~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~ 486 (536)
+++++++.+ ++|+. +||.|++||||||+.+.|.+++++. .|.+.++|..+.
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 677777776 56665 9999999999999999999999875 588999998874
No 443
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.72 E-value=7.9e-05 Score=69.82 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=45.4
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccCccEEEE-----------cCEecCCc--ccHH-Hh-hcceEEEcCCCCCCCCC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI-----------YGFSIRSS--VSMT-NI-QKSIGVCPQFNILWDAL 511 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i-----------~g~~i~~~--~~~~-~~-~~~ig~~pQ~~~l~~~l 511 (536)
|++++|+|+|||||||+++.|++.+.+. |.+.+ +|.+.... .+.. .. .+.++...|...++...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999987654 54433 33332111 1111 12 24588999998887777
Q ss_pred CHH
Q 009374 512 SGE 514 (536)
Q Consensus 512 Tv~ 514 (536)
++.
T Consensus 80 ~~~ 82 (179)
T TIGR02322 80 PAE 82 (179)
T ss_pred hHH
Confidence 764
No 444
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.70 E-value=2.7e-05 Score=73.50 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=42.0
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC--------ccccCccEEEEcCEec
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--------ITPVTGGDALIYGFSI 485 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g--------~~~pt~G~i~i~g~~i 485 (536)
+++++++..+++++ +++|++|||||||++.+++ ...|+.+++.++|.++
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~ 65 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF 65 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence 78899999888888 9999999999999999998 4556778888887653
No 445
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.70 E-value=3e-05 Score=82.19 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=46.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
.+++++ +.+.+||+++|+|+||+||||++++|++...++.+.+...|..-+
T Consensus 146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr 196 (434)
T PRK08472 146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR 196 (434)
T ss_pred HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence 589999 999999999999999999999999999999888898888887653
No 446
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.69 E-value=2.8e-05 Score=80.86 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=32.5
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i 478 (536)
.++|+++||||+||-||||.+++|+|.+.|.=|+-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~ 131 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY 131 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC
Confidence 57899999999999999999999999999987763
No 447
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.67 E-value=3.3e-05 Score=73.90 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=43.4
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
++|+++++.|+|||||||+.+.|.+.+.+. .|.+.++|.+++. .....+||.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~-----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH-----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh-----hhhhcCCcCcccH
Confidence 567899999999999999999999977654 4689999977631 2223477777764
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.65 E-value=2.7e-05 Score=79.75 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=53.7
Q ss_pred eeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHH
Q 009374 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLH 518 (536)
Q Consensus 440 lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~ 518 (536)
+++.++.|+.+++.|++||||||++++|++++++..|.+.+.. ... ..... +..+++..+... -....|..|.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~E-l~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~ 212 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TRE-IFLPH-PNYVHLFYSKGGQGLAKVTPKDLLQ 212 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccc-cCCCC-CCEEEEEecCCCCCcCccCHHHHHH
Confidence 6788999999999999999999999999999999999888853 210 01111 334555444321 134567777665
Q ss_pred HH
Q 009374 519 LF 520 (536)
Q Consensus 519 ~~ 520 (536)
..
T Consensus 213 ~~ 214 (308)
T TIGR02788 213 SC 214 (308)
T ss_pred HH
Confidence 44
No 449
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.61 E-value=3.1e-05 Score=74.11 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=43.6
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE--cCEecCCcccHHHhhcceEEEcCCCCCCC
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI--YGFSIRSSVSMTNIQKSIGVCPQFNILWD 509 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i--~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~ 509 (536)
.++++++++.+| +.+++|+|||||||++..|..... |+... .|..+........-...+.+.+|+..+++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~ 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC
Confidence 567788888877 889999999999999999875433 22221 12211000000111345888888866665
No 450
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.61 E-value=5.4e-05 Score=80.04 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=36.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt 474 (536)
.|+|.+ +.+.+||..+|+|+||+||||++++|++...++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 588888 999999999999999999999999999988774
No 451
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.60 E-value=6.3e-05 Score=90.68 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=41.7
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
-+.+..|++.+| +++|+|+|||||||+|++|.+++.|..|.+.+++.+
T Consensus 17 ~~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 17 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred CccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 345567888875 999999999999999999999999999999888764
No 452
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.58 E-value=4.9e-05 Score=76.42 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=38.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
++||.|+|||||||+.++|++++++..|.+.. +.+... .+. ..++..|+.++++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~-~Dd~~~-~~~-~~r~~~g~~~~~p 54 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC-LDDYHS-LDR-KGRKETGITALDP 54 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE-Cccccc-CCH-HHHHHhhcccccc
Confidence 47999999999999999999999988775543 334421 122 2245577777753
No 453
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.55 E-value=6e-05 Score=72.22 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=39.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCC
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNIL 507 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l 507 (536)
.++|.|++||||||+++.+.+.+++..| +.+...+.... ...++.+..|+++|++.+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQ-EDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCCh-hHHHHHHHcCCCCcCcee
Confidence 5799999999999999999999887655 44444455321 223334556888887653
No 454
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.54 E-value=9.4e-05 Score=89.84 Aligned_cols=39 Identities=46% Similarity=0.737 Sum_probs=34.4
Q ss_pred CcEEEEeCCCCCchhHHHHhH----cCccccC-ccEEEEcCEec
Q 009374 447 DQLFCLLGPNGAGKTTTISCL----TGITPVT-GGDALIYGFSI 485 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l----~g~~~pt-~G~i~i~g~~i 485 (536)
..+++|+|||||||||++.+| +|..+|. .|.++++|.++
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~ 71 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKV 71 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCc
Confidence 459999999999999999999 6999995 79989987665
No 455
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.53 E-value=0.00015 Score=75.66 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=48.3
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceee-----------ceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK-----------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~-----------~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
..+.+++|+..|++.+ .+|+ |+.+.+.+||..+|+||.|+||||++++|...+..
T Consensus 129 ~ri~Fe~LTf~YP~er--------------~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 129 NRVLFENLTPLYPNER--------------LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCeEEEEeeecCCCcc--------------ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 3589999999998642 3665 99999999999999999999999999999998654
Q ss_pred C
Q 009374 474 T 474 (536)
Q Consensus 474 t 474 (536)
.
T Consensus 195 n 195 (415)
T TIGR00767 195 N 195 (415)
T ss_pred c
Confidence 3
No 456
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.52 E-value=9.8e-05 Score=77.01 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=41.9
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccC--cc-EEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT--GG-DALIYGFSIRSSVSMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt--~G-~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~ 506 (536)
++|+.+.+.||||||||||++.|.+.+.++ ++ .|.....++. ...+..++..+.|.|...
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE--~~~~~~~~~~~~v~Q~~v 194 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE--FVYDEIETISASVCQSEI 194 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce--Eeccccccccceeeeeec
Confidence 589999999999999999999999988533 33 5544443431 223334445688888754
No 457
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.52 E-value=2.9e-05 Score=71.97 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=47.2
Q ss_pred eCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 453 LGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 453 lG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
+|++||||||+.++|++.+ |.+.++|..+. .....+ ...|+.+|+....+.+++.++..+-..
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 64 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLH---PRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQ 64 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCC---chhhhccccCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 5999999999999999987 67888884431 112233 356888998877888888888877443
No 458
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.49 E-value=0.00011 Score=71.69 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=31.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
.+.+|++++..++++++|.||||+||||++++++
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999999999999999864
No 459
>PRK06820 type III secretion system ATPase; Validated
Probab=97.46 E-value=0.00014 Score=77.20 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=42.3
Q ss_pred cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+.|+|++ +.+.+||..+|+|+||+|||||+++|++...|+.+-+-.-|.
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 3699999 999999999999999999999999999999888754433343
No 460
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.44 E-value=0.00014 Score=67.31 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=32.2
Q ss_pred EEEEeCCCCCchhHHHHhHcCc----cccCcc----EEEEcCEec
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI----TPVTGG----DALIYGFSI 485 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~----~~pt~G----~i~i~g~~i 485 (536)
.++++|+|||||||+++.++|. ..||.| .+..+|.++
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 4789999999999999999997 568889 788877754
No 461
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.44 E-value=1.4e-05 Score=75.25 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=48.0
Q ss_pred CcEEEEeCCCCCchhHHHHhHc---CccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 447 DQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
..+++++|++||||||+.+.|+ |+..++.|++....... .. ...+.++.+.|...+.+..++.+++.-.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS--GS---ERGKQLQAIMESGDLVPLDTVLDLLKDA 74 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc--CC---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999 88888888865432111 11 1123345556666677777888877643
No 462
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.44 E-value=0.00013 Score=77.49 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=37.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~ 475 (536)
.++|++ +.+.+||.++|+|+||+||||++++|++...++-
T Consensus 151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 599999 9999999999999999999999999999998864
No 463
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.43 E-value=7.7e-05 Score=80.98 Aligned_cols=51 Identities=35% Similarity=0.447 Sum_probs=48.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+++++++.+..|+.+.|+|+||+||||+++++.|+++|.+|++.+++..+
T Consensus 199 ~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i 249 (499)
T TIGR00368 199 HAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARI 249 (499)
T ss_pred HHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccc
Confidence 589999999999999999999999999999999999999999999887665
No 464
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.42 E-value=7.8e-05 Score=73.07 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=35.5
Q ss_pred EecCcEEEEeCCCCCchhHH-HHhHcCccccCccEEEEcCEe
Q 009374 444 IAKDQLFCLLGPNGAGKTTT-ISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTl-l~~l~g~~~pt~G~i~i~g~~ 484 (536)
+++|+++.|.|+||+||||+ ++++.+..++....+++....
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 78899999999999999999 799999887777778887543
No 465
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.41 E-value=0.00013 Score=88.70 Aligned_cols=42 Identities=19% Similarity=0.440 Sum_probs=35.7
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i 480 (536)
+.++|+||++++||+++|.|+||||||||+..+ +.+ .|++.+
T Consensus 949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~ 990 (1809)
T PRK00635 949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAY 990 (1809)
T ss_pred ccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEee
Confidence 469999999999999999999999999977766 333 788764
No 466
>PRK00064 recF recombination protein F; Reviewed
Probab=97.34 E-value=0.00048 Score=72.17 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=55.8
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---------------------------c-------------
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---------------------------G------------- 475 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---------------------------~------------- 475 (536)
-++++++++.+| +.+++|+|||||||++.+|..+.... .
T Consensus 13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~~~s~r~~~~~~li~~g~~~~~v~~~~~~~~~~~~i~~~~~~~~ 91 (361)
T PRK00064 13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAPGRSHRTARDKELIRFGAEAAVIHGRVEKGGRELPLGLEIDKKG 91 (361)
T ss_pred cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCCCCCccCCChhHHHhcCCCcEEEEEEEEeCCcEEEEEEEEEcCC
Confidence 456788888776 99999999999999999987543211 0
Q ss_pred -cEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 476 -GDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 476 -G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
..+.+||..+.+..+.......+.++||+..+.. .+..++..|....
T Consensus 92 ~~~~~ing~~~~~~~~l~~~~~~v~~~p~~~~l~~-~~p~~RR~fLD~~ 139 (361)
T PRK00064 92 GRKVRINGEPQRKLAELAGLLNVVLFTPEDLRLVK-GGPSERRRFLDRL 139 (361)
T ss_pred ceEEEECCccccCHHHHhhhccEEEEccchhhhhc-CCHHHHHHHHHHH
Confidence 1233444433222223333456889999987765 4677777775544
No 467
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.34 E-value=0.00015 Score=83.94 Aligned_cols=30 Identities=33% Similarity=0.601 Sum_probs=29.3
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~ 465 (536)
.|+|+|++|++||+++|.|+||||||||++
T Consensus 622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 622 NLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 699999999999999999999999999998
No 468
>PLN02165 adenylate isopentenyltransferase
Probab=97.32 E-value=0.00027 Score=72.26 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=35.2
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccc---cCccEE-EEcCEecCC
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDA-LIYGFSIRS 487 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i-~i~g~~i~~ 487 (536)
+|++++|+||||||||||...|++.+. .+.+++ ..+|.||.+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgT 87 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITT 87 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCccccc
Confidence 467999999999999999999999876 567777 348888853
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.28 E-value=0.00014 Score=69.38 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=27.3
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
++||.|++||||||+.++|.+++ ..|.+.+-+.|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 57999999999999999999988 34555554444
No 470
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.28 E-value=0.00022 Score=86.84 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=34.1
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHH---------hHcCccc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS---------CLTGITP 472 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~---------~l~g~~~ 472 (536)
..|+++|++|++||+++|.|+||||||||++ .|.|...
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~ 655 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFC 655 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 3799999999999999999999999999999 6777543
No 471
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=97.24 E-value=0.11 Score=50.58 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHH
Q 009374 132 FQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTG 211 (536)
Q Consensus 132 ~~v~~iV~EKe~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~ 211 (536)
.....+++|||++.-+.++.+.++...|-++..+...+..++..++..+++.+++.+. ..+....++..+++......
T Consensus 54 ~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 131 (232)
T TIGR00025 54 GQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRF--AGGALTALTLGAVIIALGTA 131 (232)
T ss_pred HHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CCchHHHHHHHHHHHHHHHH
Confidence 3345689999999999999999999999999987776666555444444444444332 12233333333344444455
Q ss_pred HHHHHHHhcCChhHH---HHHHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHH
Q 009374 212 FAFMFSAFISKSSSS---TTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS 278 (536)
Q Consensus 212 ~~~~~S~fF~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~ 278 (536)
++.+++.+....+.+ ..+..++.+ ...+++-..+|. +..+..++.+..+.|......++....
T Consensus 132 ~~~~i~~~~~~~~~~~~~~~i~~~~~~---p~~~lSG~~~P~-~~mP~~lq~i~~~~P~t~~~~~~r~~~ 197 (232)
T TIGR00025 132 LFAALGLVAGGTLQAEIVLAVANLVWF---IFALLSAGLVPL-NLIPTWIKWFVRVQPSSYATEALRQAA 197 (232)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH---HHHHHhheeeec-ccccHHHHHHHHhCcHHHHHHHHHHHH
Confidence 666677766544333 222211111 111111111222 234556778888889877777766553
No 472
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.23 E-value=0.00026 Score=63.67 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=29.0
Q ss_pred EEEeCCCCCchhHHHHhHcCc--------------cccCccEEEEcCEecC
Q 009374 450 FCLLGPNGAGKTTTISCLTGI--------------TPVTGGDALIYGFSIR 486 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~--------------~~pt~G~i~i~g~~i~ 486 (536)
++|+|++|||||||++.++|. ..++.|.+.+...|..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 52 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLG 52 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECC
Confidence 589999999999999999998 3444556666666653
No 473
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.23 E-value=0.00023 Score=67.28 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=28.2
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++++++.+| +++|.|+||+||||++.+|.-.+
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 467888888765 99999999999999999886554
No 474
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.21 E-value=0.00027 Score=74.00 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=35.0
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR 486 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~ 486 (536)
=++||.|++||||||+.+.|.++++++ .|.|.++|..+.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt 254 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT 254 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence 478999999999999999999999876 788999998874
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.17 E-value=0.00028 Score=66.04 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=24.0
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
|++++|+|||||||||+++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 476
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.15 E-value=0.00028 Score=67.33 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=29.2
Q ss_pred EEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
++++|++|+||||++|+|+|...+++|.+..+.
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~ 36 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGV 36 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccCc
Confidence 689999999999999999999888888776653
No 477
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.13 E-value=0.00038 Score=70.02 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=34.9
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.+.+++|+|++|||||||++.+.+.++...+.+.|.|.-
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~ 141 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ 141 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence 4578999999999999999999999888777888888753
No 478
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.13 E-value=0.00058 Score=65.96 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=31.5
Q ss_pred EEEEeCCCCCchhHHH-HhHcCcccc-----------------CccEEEEcCEecC
Q 009374 449 LFCLLGPNGAGKTTTI-SCLTGITPV-----------------TGGDALIYGFSIR 486 (536)
Q Consensus 449 i~~LlG~NGaGKSTll-~~l~g~~~p-----------------t~G~i~i~g~~i~ 486 (536)
-++|+|+||+||||++ +.++|..++ +.|.+.+++.|+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~ 66 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA 66 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECC
Confidence 3689999999999999 689998764 4678888888874
No 479
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.11 E-value=0.00047 Score=66.95 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=33.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
.+-+|++++..+|++++|.||||+||||+++++++.
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 478999999999999999999999999999999876
No 480
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.10 E-value=0.18 Score=49.17 Aligned_cols=135 Identities=9% Similarity=0.162 Sum_probs=81.3
Q ss_pred HHHHHHHHHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHH
Q 009374 135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAF 214 (536)
Q Consensus 135 ~~iV~EKe~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~ 214 (536)
..++.|||++.-+-+.....+...|+++..+...+..++..+++.++...+. . .........+++.++++++...+++
T Consensus 68 ~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~lg~ 145 (236)
T TIGR01247 68 ISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVA-I-LKPSGVIPTLVLAFIVGVALSGLGV 145 (236)
T ss_pred hHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567899988776677788999999999999988877776555444333221 1 1112233344455567888899999
Q ss_pred HHHHhcCChhHHHHHH-HHHHHHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHH
Q 009374 215 MFSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQL 276 (536)
Q Consensus 215 ~~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~ 276 (536)
+++.++++.+.+..+. .+.....++... .+|. +..+..++.+..+.|......++..
T Consensus 146 ~l~~~~~~~~~~~~i~~~~~~~l~~lsG~----~~P~-~~~P~~~~~i~~~~P~~~~~~~~r~ 203 (236)
T TIGR01247 146 AIAARMDSMEGFQIIMSMLMLPMFFLSGA----FYPI-TTMPAWMQGLAKINPLTYAVDGARY 203 (236)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHh----hcCH-HhCHHHHHHHHHHCcHHHHHHHHHH
Confidence 9999888876554333 222111111111 1222 1233456777778887665555544
No 481
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.07 E-value=0.00045 Score=63.50 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=24.7
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEE
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~ 479 (536)
++++.+|+|++|+|||||+|.|.+-.....|+|.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 4589999999999999999999998765556654
No 482
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.03 E-value=0.00028 Score=71.99 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=42.4
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.++++++....+++++++.|++||||||+++.+++.......++.+-+.|
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 58999999999999999999999999999999999877665566554444
No 483
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.98 E-value=0.0005 Score=64.21 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=34.0
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE-EcCEe
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-IYGFS 484 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~-i~g~~ 484 (536)
++|+++++.|++||||||+.+.|++.+.+..+++. +++.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 57999999999999999999999999987666654 66644
No 484
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.00036 Score=69.84 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=37.2
Q ss_pred eeeceeEEEe-------cCcEEEEeCCCCCchhHHHHhHcCcccc---CccEEEEcCEe
Q 009374 436 AIKGLWVNIA-------KDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFS 484 (536)
Q Consensus 436 al~~lsl~v~-------~gei~~LlG~NGaGKSTll~~l~g~~~p---t~G~i~i~g~~ 484 (536)
+++++++.+. +|+.++++|+||+||||++++|++.... ..|-+..+++.
T Consensus 57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4677777765 4589999999999999999999998643 34555555543
No 485
>PRK07429 phosphoribulokinase; Provisional
Probab=96.93 E-value=0.00071 Score=69.68 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=37.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCccEE-EEcCEecCCcccHHHhhcceEEEcCCC
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i-~i~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
++||.|++||||||+.+.|++++.++.+.+ ..++. . ..+ ++.|+..|+.++++
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~--~-~~~-~~~r~~~g~~~l~p 63 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY--H-SYD-RKQRKELGITALDP 63 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc--c-cCC-HHHHHhcCCcccCc
Confidence 789999999999999999999998886654 33332 1 112 23356678776653
No 486
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.91 E-value=0.00053 Score=62.28 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.3
Q ss_pred EEEeCCCCCchhHHHHhHc--CccccCccE
Q 009374 450 FCLLGPNGAGKTTTISCLT--GITPVTGGD 477 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~--g~~~pt~G~ 477 (536)
++|+|++|||||||++.|+ +..++.+|+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~ 31 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKT 31 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence 5899999999999999999 676666665
No 487
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=96.89 E-value=0.0018 Score=67.28 Aligned_cols=41 Identities=32% Similarity=0.501 Sum_probs=35.6
Q ss_pred eeeceeEEEecC-----cEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 436 AIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 436 al~~lsl~v~~g-----ei~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
-+-+..|.|..| |+...||.||-||||+++|++|.++|++|
T Consensus 351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~ 396 (592)
T KOG0063|consen 351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG 396 (592)
T ss_pred eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence 556667777776 57899999999999999999999999986
No 488
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.85 E-value=0.00054 Score=78.34 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=32.8
Q ss_pred ceeEEEecC-cEEEEeCCCCCchhHHHHhHcCc-cccCcc
Q 009374 439 GLWVNIAKD-QLFCLLGPNGAGKTTTISCLTGI-TPVTGG 476 (536)
Q Consensus 439 ~lsl~v~~g-ei~~LlG~NGaGKSTll~~l~g~-~~pt~G 476 (536)
.+|+.+.++ ++++|.||||+||||++++++|. +.+..|
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 378888877 99999999999999999999998 455555
No 489
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0011 Score=68.76 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=51.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcCE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGF 483 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g~ 483 (536)
-|.++|.+.+-.+. ....+-||.|-.|.-+||+||||-|||||++.|+.. --|..=++.++.+
T Consensus 264 DIKiEnF~ISA~Gk---------------~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQ 328 (807)
T KOG0066|consen 264 DIKIENFDISAQGK---------------LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQ 328 (807)
T ss_pred cceeeeeeeecccc---------------eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeee
Confidence 46777776665442 578999999999999999999999999999999864 3355566777776
Q ss_pred ec
Q 009374 484 SI 485 (536)
Q Consensus 484 ~i 485 (536)
.+
T Consensus 329 Ev 330 (807)
T KOG0066|consen 329 EV 330 (807)
T ss_pred ee
Confidence 65
No 490
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.82 E-value=0.0008 Score=64.78 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=25.5
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.++.+++|.|++|||||||.+.|.+.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999883
No 491
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.79 E-value=0.0019 Score=56.26 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=33.0
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCc-cEEEEcCEec
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFSI 485 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~-G~i~i~g~~i 485 (536)
+++.+.|.||+|+||||+++.++....... +-+.++....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 367899999999999999999999987665 5677776543
No 492
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.78 E-value=0.0012 Score=70.14 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=35.3
Q ss_pred eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (536)
Q Consensus 437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~ 475 (536)
.=|.-+.+.+||.++|+|+||+||||++++|++...|+.
T Consensus 148 ~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~ 186 (442)
T PRK08927 148 ALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV 186 (442)
T ss_pred EEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence 445678999999999999999999999999999998874
No 493
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.78 E-value=0.0006 Score=66.21 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=37.3
Q ss_pred EEEEeCCCCCchhHHHHhHc---CccccCccEEE--------EcCEecCCcccHHHhhcceEEEcC
Q 009374 449 LFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQ 503 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~--------i~g~~i~~~~~~~~~~~~ig~~pQ 503 (536)
+++|.||+||||||+.+.|+ |+..+++|.++ ..|.+..+.....+..+..|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFI 69 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEe
Confidence 68999999999999999999 55558888775 344444322223334455565554
No 494
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=96.77 E-value=0.43 Score=47.34 Aligned_cols=136 Identities=12% Similarity=0.153 Sum_probs=87.1
Q ss_pred HHHHHHHHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 009374 136 SLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM 215 (536)
Q Consensus 136 ~iV~EKe~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~~ 215 (536)
.+.+|||+|.-+.+..+-++...+-++..++..+..++..+++.++...+... ...+...++..+++++++...++++
T Consensus 81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~--~~~~~l~~~~~~ll~~l~~~~lg~~ 158 (253)
T TIGR01291 81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYI--EWWSLIYILPVIALTGLAFASLSML 158 (253)
T ss_pred HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999988777766655444444444321 2233444455667788888899999
Q ss_pred HHHhcCChhHHHHHH-HHHHHHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHH
Q 009374 216 FSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS 278 (536)
Q Consensus 216 ~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~ 278 (536)
++.+.++.+.+..+. ++...+.++... .+|.+ ..+..++.+..+.|-.....++....
T Consensus 159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~----~~P~~-~mP~~lq~i~~~nPlt~~v~~~R~~~ 217 (253)
T TIGR01291 159 VAALAPSYAYFAFYQSLVITPMLFLSGV----VFPVF-QLNDVIQGMTHFLPLAHSIDDIRPVM 217 (253)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHH----hcCHH-hChHHHHHHHHHCcHHHHHHHHHHHH
Confidence 999887776554332 222211111111 12211 23445677777889887777766553
No 495
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.76 E-value=0.0022 Score=61.36 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=29.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcccc-CccEEEEcCEec
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGFSI 485 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~i~g~~i 485 (536)
++.+.||+||||||+++.|.+...+ ..|.|...+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 6789999999999999998888764 356766555444
No 496
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.76 E-value=0.0013 Score=63.07 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=24.3
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc-ccCccEE
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT-PVTGGDA 478 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~-~pt~G~i 478 (536)
.+|++||+|+|||||+++|+|.. ....+++
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~ 32 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEEL 32 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeE
Confidence 47999999999999999999984 3444444
No 497
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.76 E-value=0.0012 Score=63.97 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=25.8
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
+=+|++++=..+.+..|.||||+||||+++.+..
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 3455555422237899999999999999999983
No 498
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.73 E-value=0.0014 Score=71.06 Aligned_cols=44 Identities=23% Similarity=0.484 Sum_probs=38.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc---CccccCccEEE
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL 479 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~ 479 (536)
..+||+.+.. +|.++++.||+||||||+.+.|+ |....++|.++
T Consensus 273 RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y 319 (512)
T PRK13477 273 RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY 319 (512)
T ss_pred EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence 5899999987 88999999999999999999999 66666777765
No 499
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.70 E-value=0.0015 Score=64.64 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=34.6
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~ 477 (536)
|+|.+ +.+.+||..+|+|++|+||||+++++.+......++
T Consensus 6 ~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd 46 (249)
T cd01128 6 VVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPE 46 (249)
T ss_pred heeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCC
Confidence 55433 578999999999999999999999999998876443
No 500
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.69 E-value=0.00092 Score=61.74 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=29.4
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~ 475 (536)
...+..+.++.+..|.|||||||||+++.+....-..+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~ 49 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQ 49 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 44556666667999999999999999999866554443
Done!