Query 009374
Match_columns 536
No_of_seqs 340 out of 3640
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 03:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 99.9 3.2E-24 1.1E-28 220.7 13.8 120 404-534 22-143 (366)
2 3rlf_A Maltose/maltodextrin im 99.9 8.9E-24 3E-28 218.7 12.7 112 406-535 3-114 (381)
3 1vpl_A ABC transporter, ATP-bi 99.9 1.7E-23 5.8E-28 206.7 14.0 110 404-530 13-122 (256)
4 3fvq_A Fe(3+) IONS import ATP- 99.9 6.7E-24 2.3E-28 218.2 9.8 114 406-534 4-118 (359)
5 2olj_A Amino acid ABC transpor 99.9 3.1E-23 1.1E-27 205.5 14.1 110 406-530 24-135 (263)
6 2pcj_A ABC transporter, lipopr 99.9 3.5E-23 1.2E-27 200.6 14.0 110 406-530 4-116 (224)
7 1z47_A CYSA, putative ABC-tran 99.9 2.9E-23 1E-27 213.5 12.9 112 404-533 12-124 (355)
8 3gfo_A Cobalt import ATP-bindi 99.9 5.5E-23 1.9E-27 205.0 14.0 116 405-534 6-123 (275)
9 1b0u_A Histidine permease; ABC 99.9 5.2E-23 1.8E-27 204.1 13.4 110 406-530 6-128 (262)
10 2it1_A 362AA long hypothetical 99.9 5.7E-23 1.9E-27 212.0 13.7 110 406-533 3-112 (362)
11 3tif_A Uncharacterized ABC tra 99.9 7.5E-23 2.6E-27 199.7 13.9 113 407-530 2-120 (235)
12 1g29_1 MALK, maltose transport 99.9 6.4E-23 2.2E-27 212.7 13.1 113 406-533 3-118 (372)
13 2yyz_A Sugar ABC transporter, 99.9 3.1E-23 1.1E-27 213.7 10.1 108 406-531 3-110 (359)
14 1ji0_A ABC transporter; ATP bi 99.9 9.2E-23 3.1E-27 199.8 12.8 102 405-521 5-106 (240)
15 1g6h_A High-affinity branched- 99.9 5.2E-23 1.8E-27 203.6 10.1 104 405-523 6-109 (257)
16 1v43_A Sugar-binding transport 99.9 5.9E-23 2E-27 212.6 9.9 110 406-533 11-120 (372)
17 1oxx_K GLCV, glucose, ABC tran 99.9 4.8E-23 1.6E-27 212.3 9.0 113 406-533 3-119 (353)
18 4g1u_C Hemin import ATP-bindin 99.9 4.8E-22 1.6E-26 197.4 12.0 105 404-524 9-113 (266)
19 3d31_A Sulfate/molybdate ABC t 99.9 3.8E-22 1.3E-26 204.9 11.6 103 407-528 2-104 (348)
20 1sgw_A Putative ABC transporte 99.9 5.8E-22 2E-26 190.4 12.2 100 404-525 8-107 (214)
21 2ff7_A Alpha-hemolysin translo 99.8 2.6E-21 8.8E-26 190.2 12.3 100 406-520 7-106 (247)
22 2yz2_A Putative ABC transporte 99.8 3.5E-21 1.2E-25 191.3 10.0 103 406-522 2-105 (266)
23 2zu0_C Probable ATP-dependent 99.8 7.1E-21 2.4E-25 189.2 11.9 102 405-521 19-122 (267)
24 2d2e_A SUFC protein; ABC-ATPas 99.8 6.1E-21 2.1E-25 187.9 11.3 101 406-521 3-105 (250)
25 1mv5_A LMRA, multidrug resista 99.8 1.8E-21 6.1E-26 191.0 7.3 98 407-520 2-99 (243)
26 3nh6_A ATP-binding cassette SU 99.8 5.9E-21 2E-25 192.8 11.2 101 405-521 52-152 (306)
27 2ihy_A ABC transporter, ATP-bi 99.8 3.1E-21 1.1E-25 192.8 9.0 101 404-520 19-123 (279)
28 2ixe_A Antigen peptide transpo 99.8 9.2E-21 3.1E-25 188.8 12.3 103 405-521 15-117 (271)
29 2onk_A Molybdate/tungstate ABC 99.8 1.7E-21 6E-26 190.5 6.8 98 407-525 2-99 (240)
30 2qi9_C Vitamin B12 import ATP- 99.8 3.6E-20 1.2E-24 182.1 10.5 94 406-520 4-97 (249)
31 2pjz_A Hypothetical protein ST 99.8 3.1E-20 1.1E-24 183.9 10.2 107 407-532 2-109 (263)
32 3gd7_A Fusion complex of cysti 99.8 3E-20 1E-24 193.5 10.0 100 405-520 18-117 (390)
33 2ghi_A Transport protein; mult 99.8 6.4E-20 2.2E-24 181.6 11.4 101 405-520 16-116 (260)
34 2nq2_C Hypothetical ABC transp 99.8 1.3E-19 4.5E-24 178.6 11.0 87 406-521 4-91 (253)
35 2pze_A Cystic fibrosis transme 99.8 2.3E-19 7.8E-24 174.3 11.6 88 405-520 5-92 (229)
36 3b60_A Lipid A export ATP-bind 99.8 2.4E-19 8.1E-24 197.4 12.2 113 405-533 340-452 (582)
37 4a82_A Cystic fibrosis transme 99.8 2.4E-19 8.3E-24 197.1 12.2 101 405-520 338-438 (578)
38 3b5x_A Lipid A export ATP-bind 99.8 2.2E-19 7.4E-24 197.7 11.6 113 405-533 340-452 (582)
39 2yl4_A ATP-binding cassette SU 99.8 2.6E-19 8.9E-24 197.6 11.7 101 407-521 342-442 (595)
40 2cbz_A Multidrug resistance-as 99.8 2E-19 6.8E-24 175.6 9.1 88 406-521 3-90 (237)
41 3qf4_B Uncharacterized ABC tra 99.8 3.3E-19 1.1E-23 196.7 11.4 100 405-520 353-452 (598)
42 3qf4_A ABC transporter, ATP-bi 99.8 3.9E-19 1.3E-23 195.7 10.1 101 405-520 340-440 (587)
43 4f4c_A Multidrug resistance pr 99.7 3E-18 1E-22 204.1 10.4 116 405-534 1075-1190(1321)
44 3g5u_A MCG1178, multidrug resi 99.7 1.9E-17 6.4E-22 196.8 13.9 103 405-521 386-488 (1284)
45 2bbs_A Cystic fibrosis transme 99.7 1.6E-17 5.5E-22 166.7 8.1 82 405-518 39-120 (290)
46 4f4c_A Multidrug resistance pr 99.7 3.8E-17 1.3E-21 194.6 11.8 114 405-534 414-527 (1321)
47 3g5u_A MCG1178, multidrug resi 99.7 1.8E-17 6E-22 197.1 8.6 114 405-532 1029-1142(1284)
48 1htw_A HI0065; nucleotide-bind 99.6 7.7E-18 2.6E-22 154.0 -8.6 78 435-520 21-98 (158)
49 3bk7_A ABC transporter ATP-bin 99.5 2.8E-14 9.4E-19 157.0 9.5 87 404-520 355-441 (607)
50 1yqt_A RNAse L inhibitor; ATP- 99.5 3.9E-14 1.3E-18 154.0 10.1 87 404-520 285-371 (538)
51 3ozx_A RNAse L inhibitor; ATP 99.5 9.7E-14 3.3E-18 150.6 10.5 88 404-520 267-354 (538)
52 2iw3_A Elongation factor 3A; a 99.5 5.2E-14 1.8E-18 160.5 8.3 90 405-519 670-763 (986)
53 2dpy_A FLII, flagellum-specifi 99.4 3.1E-14 1.1E-18 150.7 -0.7 105 405-524 130-242 (438)
54 3b9q_A Chloroplast SRP recepto 99.4 1.1E-13 3.7E-18 139.7 2.6 86 436-521 89-180 (302)
55 1z6g_A Guanylate kinase; struc 99.4 1.6E-15 5.4E-20 146.1 -11.1 74 435-512 11-84 (218)
56 3bk7_A ABC transporter ATP-bin 99.3 1.9E-13 6.5E-18 150.3 2.3 98 406-518 83-201 (607)
57 1yqt_A RNAse L inhibitor; ATP- 99.3 3.2E-13 1.1E-17 146.8 1.8 97 407-518 21-131 (538)
58 3b85_A Phosphate starvation-in 99.3 3.9E-14 1.3E-18 135.2 -4.9 63 434-505 13-75 (208)
59 2iw3_A Elongation factor 3A; a 99.3 3.5E-12 1.2E-16 145.5 9.1 85 405-519 434-519 (986)
60 2og2_A Putative signal recogni 99.3 6.6E-13 2.3E-17 136.7 2.8 84 438-521 148-237 (359)
61 1sq5_A Pantothenate kinase; P- 99.3 9E-14 3.1E-18 140.8 -4.8 97 406-525 37-157 (308)
62 1znw_A Guanylate kinase, GMP k 99.2 4E-14 1.4E-18 134.8 -8.1 77 435-518 10-86 (207)
63 2yhs_A FTSY, cell division pro 99.2 1.4E-12 4.9E-17 138.3 2.4 86 437-522 283-373 (503)
64 2jeo_A Uridine-cytidine kinase 99.2 1.9E-12 6.4E-17 126.6 2.5 76 434-525 12-87 (245)
65 3ux8_A Excinuclease ABC, A sub 99.2 2.4E-12 8.3E-17 143.8 2.8 83 435-522 32-161 (670)
66 3sop_A Neuronal-specific septi 99.2 4.3E-13 1.5E-17 133.2 -4.1 72 449-524 4-75 (270)
67 3aez_A Pantothenate kinase; tr 99.2 2.7E-13 9.1E-18 137.4 -5.8 88 404-528 41-151 (312)
68 1s96_A Guanylate kinase, GMP k 99.2 8.8E-14 3E-18 133.9 -9.0 88 442-534 11-104 (219)
69 2gza_A Type IV secretion syste 99.2 4.3E-12 1.5E-16 131.3 2.3 84 436-522 164-250 (361)
70 3j16_B RLI1P; ribosome recycli 99.2 2.3E-11 7.8E-16 133.6 7.1 70 435-518 361-435 (608)
71 2obl_A ESCN; ATPase, hydrolase 99.2 8.3E-12 2.8E-16 128.2 2.9 86 405-505 44-135 (347)
72 2npi_A Protein CLP1; CLP1-PCF1 99.2 1.5E-12 5.1E-17 138.6 -2.9 84 405-520 117-205 (460)
73 1tq4_A IIGP1, interferon-induc 99.1 1.1E-12 3.6E-17 137.5 -4.5 74 435-519 37-130 (413)
74 1rj9_A FTSY, signal recognitio 99.1 1.3E-11 4.5E-16 124.5 3.6 75 446-520 101-180 (304)
75 3szr_A Interferon-induced GTP- 99.1 7.6E-13 2.6E-17 146.0 -6.8 102 406-523 10-124 (608)
76 2qm8_A GTPase/ATPase; G protei 99.1 4.8E-13 1.7E-17 137.1 -8.1 90 406-510 29-121 (337)
77 1tf7_A KAIC; homohexamer, hexa 99.1 4.4E-12 1.5E-16 137.7 -1.3 70 435-506 26-98 (525)
78 2v9p_A Replication protein E1; 99.1 7.1E-13 2.4E-17 133.4 -8.4 77 407-503 102-179 (305)
79 1u0l_A Probable GTPase ENGC; p 99.1 8.9E-12 3E-16 125.7 -0.6 77 442-520 164-259 (301)
80 3e70_C DPA, signal recognition 99.1 5.1E-11 1.8E-15 121.3 4.5 79 443-521 125-208 (328)
81 2qag_B Septin-6, protein NEDD5 99.0 3.3E-12 1.1E-16 133.8 -6.5 88 406-519 16-105 (427)
82 3euj_A Chromosome partition pr 99.0 4.1E-11 1.4E-15 127.5 1.4 51 435-486 18-68 (483)
83 2pt7_A CAG-ALFA; ATPase, prote 99.0 6.2E-11 2.1E-15 121.0 1.5 76 436-519 160-235 (330)
84 2yv5_A YJEQ protein; hydrolase 99.0 5.2E-11 1.8E-15 120.1 0.8 71 443-517 161-240 (302)
85 4aby_A DNA repair protein RECN 99.0 1.9E-10 6.5E-15 120.8 5.1 85 435-522 49-172 (415)
86 3tr0_A Guanylate kinase, GMP k 99.0 1.7E-11 5.8E-16 115.7 -3.2 73 441-518 1-73 (205)
87 1t9h_A YLOQ, probable GTPase E 99.0 9.7E-11 3.3E-15 118.0 0.8 74 442-518 168-248 (307)
88 4gp7_A Metallophosphoesterase; 98.9 4.2E-11 1.4E-15 110.4 -2.7 83 439-521 1-95 (171)
89 2rcn_A Probable GTPase ENGC; Y 98.9 2.1E-10 7.1E-15 117.8 2.0 86 436-532 205-292 (358)
90 1zp6_A Hypothetical protein AT 98.9 7.8E-11 2.7E-15 109.9 -1.4 73 443-522 5-77 (191)
91 2qnr_A Septin-2, protein NEDD5 98.9 8.6E-11 2.9E-15 118.4 -1.5 85 410-520 2-87 (301)
92 3j16_B RLI1P; ribosome recycli 98.9 4.1E-10 1.4E-14 123.7 3.7 43 435-478 92-134 (608)
93 1qhl_A Protein (cell division 98.9 9.4E-11 3.2E-15 113.1 -3.1 63 441-504 22-91 (227)
94 2i3b_A HCR-ntpase, human cance 98.9 2.6E-10 8.8E-15 107.0 -0.0 54 447-505 1-54 (189)
95 2ehv_A Hypothetical protein PH 98.8 1.7E-10 5.7E-15 112.1 -2.2 72 443-516 26-99 (251)
96 3lnc_A Guanylate kinase, GMP k 98.8 1.7E-11 5.9E-16 118.4 -9.2 39 435-473 15-54 (231)
97 2eyu_A Twitching motility prot 98.8 4.6E-10 1.6E-14 110.8 0.6 62 435-503 15-77 (261)
98 2qag_C Septin-7; cell cycle, c 98.8 2E-10 6.9E-15 120.6 -2.1 91 406-522 11-101 (418)
99 3ozx_A RNAse L inhibitor; ATP 98.8 1.7E-09 5.9E-14 117.3 4.6 35 444-478 22-56 (538)
100 3ux8_A Excinuclease ABC, A sub 98.8 2.5E-09 8.7E-14 119.3 4.9 51 435-486 336-408 (670)
101 1p9r_A General secretion pathw 98.7 2.6E-10 8.8E-15 119.8 -5.1 85 435-521 157-259 (418)
102 2oap_1 GSPE-2, type II secreti 98.7 5.2E-09 1.8E-13 112.7 4.0 85 435-524 248-355 (511)
103 4a74_A DNA repair and recombin 98.7 2.1E-09 7E-14 102.9 0.4 68 443-518 21-95 (231)
104 2bdt_A BH3686; alpha-beta prot 98.7 1.3E-09 4.6E-14 101.5 -1.1 66 447-522 2-67 (189)
105 3asz_A Uridine kinase; cytidin 98.7 9.4E-09 3.2E-13 97.4 4.0 53 444-519 3-57 (211)
106 4eun_A Thermoresistant glucoki 98.7 1.7E-09 5.7E-14 102.0 -1.7 81 436-522 18-98 (200)
107 1pui_A ENGB, probable GTP-bind 98.6 4.8E-09 1.6E-13 98.9 0.6 57 406-480 3-64 (210)
108 2ewv_A Twitching motility prot 98.6 4.1E-09 1.4E-13 109.3 -0.9 61 436-503 127-188 (372)
109 2bbw_A Adenylate kinase 4, AK4 98.6 2.6E-09 8.9E-14 104.1 -3.3 70 446-520 26-98 (246)
110 2r6f_A Excinuclease ABC subuni 98.6 2.5E-08 8.4E-13 113.3 4.1 33 436-468 639-671 (972)
111 2vf7_A UVRA2, excinuclease ABC 98.6 6.2E-08 2.1E-12 109.6 7.3 36 436-471 512-548 (842)
112 1cr0_A DNA primase/helicase; R 98.5 5.7E-09 2E-13 104.5 -1.3 50 435-484 23-73 (296)
113 4e22_A Cytidylate kinase; P-lo 98.5 1.5E-08 5.2E-13 99.2 0.8 61 445-505 25-96 (252)
114 2f1r_A Molybdopterin-guanine d 98.5 7.9E-09 2.7E-13 95.2 -1.4 61 448-508 3-73 (171)
115 1in4_A RUVB, holliday junction 98.5 1.4E-09 4.8E-14 111.1 -7.2 82 435-520 32-125 (334)
116 1zu4_A FTSY; GTPase, signal re 98.5 3.4E-08 1.2E-12 100.2 2.7 84 437-520 95-187 (320)
117 2o8b_B DNA mismatch repair pro 98.5 4.2E-08 1.4E-12 113.6 3.4 54 405-473 749-814 (1022)
118 1lw7_A Transcriptional regulat 98.5 3.4E-09 1.1E-13 109.6 -5.4 68 436-506 157-234 (365)
119 1ye8_A Protein THEP1, hypothet 98.5 2.1E-08 7.3E-13 93.0 0.5 51 449-505 2-52 (178)
120 1lvg_A Guanylate kinase, GMP k 98.5 1.4E-08 5E-13 95.6 -0.7 40 444-485 1-53 (198)
121 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 1.9E-08 6.5E-13 104.6 -0.0 84 443-526 16-116 (392)
122 1ewq_A DNA mismatch repair pro 98.4 1.8E-08 6.2E-13 113.2 -1.2 67 435-519 567-634 (765)
123 2j41_A Guanylate kinase; GMP, 98.4 1.5E-09 5.1E-14 102.2 -8.7 35 442-476 1-35 (207)
124 1nij_A Hypothetical protein YJ 98.4 6E-09 2.1E-13 105.7 -4.8 72 448-519 5-101 (318)
125 3c8u_A Fructokinase; YP_612366 98.4 5.7E-08 2E-12 92.0 1.9 42 444-485 19-63 (208)
126 1e69_A Chromosome segregation 98.4 7.1E-08 2.4E-12 97.9 2.2 69 438-508 16-134 (322)
127 2x8a_A Nuclear valosin-contain 98.4 4E-09 1.4E-13 104.7 -7.1 65 435-504 34-98 (274)
128 3jvv_A Twitching mobility prot 98.4 7.9E-08 2.7E-12 98.8 2.2 77 435-516 104-188 (356)
129 3a00_A Guanylate kinase, GMP k 98.4 6.6E-08 2.3E-12 89.9 1.3 28 447-474 1-28 (186)
130 1pzn_A RAD51, DNA repair and r 98.4 1.6E-08 5.4E-13 104.0 -3.3 76 435-518 118-201 (349)
131 3uie_A Adenylyl-sulfate kinase 98.4 1.3E-08 4.5E-13 95.8 -3.7 51 435-486 13-65 (200)
132 3pih_A Uvrabc system protein A 98.3 2.5E-07 8.6E-12 105.5 5.4 30 435-464 598-627 (916)
133 2w0m_A SSO2452; RECA, SSPF, un 98.3 3.4E-08 1.2E-12 94.3 -1.6 51 435-485 10-61 (235)
134 1n0w_A DNA repair protein RAD5 98.3 1.7E-07 5.7E-12 90.3 2.9 75 443-517 20-105 (243)
135 2ygr_A Uvrabc system protein A 98.3 2.5E-07 8.4E-12 105.5 3.9 33 436-468 657-689 (993)
136 3nwj_A ATSK2; P loop, shikimat 98.3 8.2E-08 2.8E-12 93.9 -1.2 53 405-471 16-72 (250)
137 1wb9_A DNA mismatch repair pro 98.2 1.2E-07 4.1E-12 107.2 -0.6 70 435-519 596-665 (800)
138 3kta_A Chromosome segregation 98.2 5.3E-07 1.8E-11 83.1 3.7 40 436-476 14-55 (182)
139 1knq_A Gluconate kinase; ALFA/ 98.1 1.3E-07 4.5E-12 86.6 -2.7 66 445-517 6-72 (175)
140 1iy2_A ATP-dependent metallopr 98.1 8.2E-09 2.8E-13 102.4 -12.1 81 435-520 63-144 (278)
141 1svm_A Large T antigen; AAA+ f 98.1 2.8E-07 9.7E-12 95.3 -2.0 70 435-513 157-227 (377)
142 2kjq_A DNAA-related protein; s 98.0 1.2E-06 4.2E-11 78.5 1.9 46 435-486 29-76 (149)
143 1udx_A The GTP-binding protein 98.0 2.2E-06 7.4E-11 89.9 3.7 35 437-471 147-181 (416)
144 3thx_A DNA mismatch repair pro 98.0 2.5E-06 8.7E-11 97.6 4.4 42 435-476 650-699 (934)
145 3thx_B DNA mismatch repair pro 98.0 1.4E-06 4.9E-11 99.4 1.9 36 435-470 661-696 (918)
146 2o5v_A DNA replication and rep 98.0 3.2E-06 1.1E-10 86.9 4.3 34 435-469 15-48 (359)
147 1ixz_A ATP-dependent metallopr 98.0 8.1E-08 2.8E-12 93.7 -7.5 82 435-521 39-121 (254)
148 2vp4_A Deoxynucleoside kinase; 98.0 2.6E-06 9E-11 81.9 3.0 64 443-510 16-88 (230)
149 3cr8_A Sulfate adenylyltranfer 98.0 4.6E-07 1.6E-11 98.3 -2.8 43 443-485 365-409 (552)
150 2px0_A Flagellar biosynthesis 98.0 6.2E-06 2.1E-10 82.5 5.6 41 445-485 103-144 (296)
151 1kgd_A CASK, peripheral plasma 97.9 2.2E-06 7.4E-11 79.2 2.0 35 445-479 3-38 (180)
152 1rz3_A Hypothetical protein rb 97.9 1.8E-06 6.1E-11 81.2 1.4 42 444-485 19-60 (201)
153 4ad8_A DNA repair protein RECN 97.9 2.1E-06 7.1E-11 92.8 2.1 86 435-523 49-173 (517)
154 1cke_A CK, MSSA, protein (cyti 97.9 8.1E-07 2.8E-11 84.7 -1.1 60 446-505 4-74 (227)
155 3lda_A DNA repair protein RAD5 97.9 3.6E-06 1.2E-10 87.8 3.1 68 436-503 166-241 (400)
156 3ec2_A DNA replication protein 97.9 1.7E-06 5.8E-11 79.6 0.2 36 442-477 33-68 (180)
157 1vma_A Cell division protein F 97.9 3.2E-06 1.1E-10 85.0 1.9 47 440-486 97-143 (306)
158 1oix_A RAS-related protein RAB 97.8 7.6E-06 2.6E-10 75.9 3.8 37 449-485 31-78 (191)
159 3vaa_A Shikimate kinase, SK; s 97.8 5.8E-06 2E-10 77.4 2.8 37 435-471 13-49 (199)
160 3tqc_A Pantothenate kinase; bi 97.8 1.8E-06 6.3E-11 87.2 -1.1 48 435-482 74-129 (321)
161 1ls1_A Signal recognition part 97.8 4.9E-06 1.7E-10 83.3 1.9 47 438-486 91-137 (295)
162 3ney_A 55 kDa erythrocyte memb 97.8 6.8E-06 2.3E-10 77.1 2.2 42 442-485 14-68 (197)
163 3tau_A Guanylate kinase, GMP k 97.8 9.2E-06 3.1E-10 76.8 3.1 29 445-473 6-34 (208)
164 1w1w_A Structural maintenance 97.8 9.4E-06 3.2E-10 85.5 3.4 35 442-476 21-55 (430)
165 2p67_A LAO/AO transport system 97.8 3.3E-06 1.1E-10 86.3 -0.2 51 435-485 44-94 (341)
166 3k1j_A LON protease, ATP-depen 97.7 5.3E-06 1.8E-10 91.3 0.8 65 435-505 48-113 (604)
167 3qf7_A RAD50; ABC-ATPase, ATPa 97.7 1.2E-05 4.2E-10 82.8 3.4 34 435-469 12-45 (365)
168 2f9l_A RAB11B, member RAS onco 97.7 2.1E-05 7.1E-10 73.2 3.8 37 449-485 7-54 (199)
169 2cvh_A DNA repair and recombin 97.7 9.8E-06 3.4E-10 76.5 1.2 48 435-484 7-55 (220)
170 2dr3_A UPF0273 protein PH0284; 97.6 6.3E-06 2.2E-10 79.2 -0.6 50 435-484 10-61 (247)
171 1sxj_E Activator 1 40 kDa subu 97.6 1.3E-05 4.6E-10 81.5 1.6 55 450-507 39-94 (354)
172 2www_A Methylmalonic aciduria 97.6 2E-05 6.7E-10 80.8 2.2 42 445-486 72-113 (349)
173 3hr8_A Protein RECA; alpha and 97.5 2.4E-05 8.4E-10 80.1 2.4 83 436-522 48-133 (356)
174 2qt1_A Nicotinamide riboside k 97.5 3.8E-05 1.3E-09 72.1 3.5 33 440-472 14-46 (207)
175 3m6a_A ATP-dependent protease 97.5 1.2E-05 4E-10 87.4 -0.2 68 435-504 97-164 (543)
176 1tf7_A KAIC; homohexamer, hexa 97.5 2.5E-05 8.6E-10 84.4 1.7 43 441-484 275-319 (525)
177 1mky_A Probable GTP-binding pr 97.4 6.1E-05 2.1E-09 79.5 3.7 37 449-485 182-230 (439)
178 1kag_A SKI, shikimate kinase I 97.4 5.2E-05 1.8E-09 68.7 2.2 33 446-482 3-35 (173)
179 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 9.6E-05 3.3E-09 66.0 3.7 30 438-468 15-44 (149)
180 1sxj_C Activator 1 40 kDa subu 97.3 5.3E-06 1.8E-10 84.4 -5.7 68 435-502 32-101 (340)
181 2pez_A Bifunctional 3'-phospho 97.3 7.3E-05 2.5E-09 68.4 2.5 40 445-485 3-44 (179)
182 2ffh_A Protein (FFH); SRP54, s 97.3 7.4E-05 2.5E-09 78.3 2.4 48 438-487 91-138 (425)
183 1odf_A YGR205W, hypothetical 3 97.3 8.6E-05 2.9E-09 74.0 2.7 56 446-519 30-85 (290)
184 1j8m_F SRP54, signal recogniti 97.3 5.8E-05 2E-09 75.5 1.4 48 438-486 89-137 (297)
185 1nlf_A Regulatory protein REPA 97.2 0.00012 4.3E-09 72.1 3.2 30 443-472 26-55 (279)
186 2dy1_A Elongation factor G; tr 97.2 5.9E-05 2E-09 83.8 0.5 62 441-504 3-66 (665)
187 1m7g_A Adenylylsulfate kinase; 97.1 0.00012 4E-09 69.1 1.5 44 442-485 20-65 (211)
188 4eaq_A DTMP kinase, thymidylat 97.1 0.00022 7.5E-09 68.4 2.8 46 435-481 11-59 (229)
189 2qtf_A Protein HFLX, GTP-bindi 97.0 0.0004 1.4E-08 71.4 4.7 37 449-485 181-228 (364)
190 1m2o_B GTP-binding protein SAR 97.0 0.00035 1.2E-08 64.4 3.9 49 435-484 12-68 (190)
191 1f6b_A SAR1; gtpases, N-termin 97.0 0.00019 6.4E-09 66.8 1.7 49 435-484 14-70 (198)
192 2gj8_A MNME, tRNA modification 97.0 0.00052 1.8E-08 62.2 4.4 39 446-484 3-53 (172)
193 1jjv_A Dephospho-COA kinase; P 96.9 0.00031 1E-08 65.7 2.7 29 449-482 4-32 (206)
194 3ice_A Transcription terminati 96.9 0.00016 5.4E-09 74.3 0.7 53 406-472 133-199 (422)
195 3t34_A Dynamin-related protein 96.9 0.00027 9.1E-09 72.5 2.1 43 435-480 25-69 (360)
196 2yvu_A Probable adenylyl-sulfa 96.9 0.0003 1E-08 64.6 2.0 41 443-483 9-50 (186)
197 3qks_A DNA double-strand break 96.9 0.00054 1.9E-08 64.3 3.7 29 439-468 16-44 (203)
198 2qag_A Septin-2, protein NEDD5 96.8 0.00015 5.2E-09 74.4 -0.4 51 406-477 17-67 (361)
199 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00032 1.1E-08 75.0 1.8 48 435-486 54-101 (499)
200 2wjg_A FEOB, ferrous iron tran 96.8 0.00082 2.8E-08 61.2 4.2 36 449-484 9-55 (188)
201 3qkt_A DNA double-strand break 96.8 0.00058 2E-08 69.4 3.4 30 438-468 15-44 (339)
202 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00057 2E-08 70.8 3.2 39 444-482 19-68 (396)
203 2wji_A Ferrous iron transport 96.7 0.0013 4.3E-08 59.0 4.9 23 449-471 5-27 (165)
204 2zr9_A Protein RECA, recombina 96.7 0.00051 1.7E-08 70.2 2.2 84 436-523 48-134 (349)
205 1ega_A Protein (GTP-binding pr 96.6 0.00067 2.3E-08 67.8 2.2 27 445-471 6-32 (301)
206 2qor_A Guanylate kinase; phosp 96.5 0.00086 2.9E-08 62.7 1.9 30 443-472 8-37 (204)
207 1y63_A LMAJ004144AAA protein; 96.4 0.0014 4.8E-08 60.2 2.9 32 439-470 2-33 (184)
208 3kl4_A SRP54, signal recogniti 96.4 0.0012 4E-08 69.3 2.5 41 446-486 96-136 (433)
209 2if2_A Dephospho-COA kinase; a 96.3 0.0012 4.2E-08 61.3 2.2 21 449-469 3-23 (204)
210 1np6_A Molybdopterin-guanine d 96.3 0.0016 5.3E-08 59.7 2.9 37 448-484 7-46 (174)
211 3t61_A Gluconokinase; PSI-biol 96.3 0.00093 3.2E-08 62.2 1.2 35 447-485 18-52 (202)
212 2ga8_A Hypothetical 39.9 kDa p 96.2 0.00048 1.6E-08 70.1 -1.4 38 435-472 10-49 (359)
213 2zej_A Dardarin, leucine-rich 96.2 0.0024 8.2E-08 58.2 3.1 23 449-471 4-26 (184)
214 3cm0_A Adenylate kinase; ATP-b 96.1 0.0025 8.5E-08 58.1 2.6 25 445-469 2-26 (186)
215 3lxx_A GTPase IMAP family memb 96.0 0.0033 1.1E-07 60.1 3.3 27 450-476 32-58 (239)
216 3auy_A DNA double-strand break 96.0 0.0033 1.1E-07 64.6 3.4 32 436-468 15-46 (371)
217 3r20_A Cytidylate kinase; stru 95.9 0.0013 4.4E-08 63.2 0.1 58 446-503 8-76 (233)
218 2p5t_B PEZT; postsegregational 95.9 0.0019 6.6E-08 62.6 1.3 41 443-485 28-68 (253)
219 1q3t_A Cytidylate kinase; nucl 95.9 0.0031 1.1E-07 60.3 2.7 26 444-469 13-38 (236)
220 1fzq_A ADP-ribosylation factor 95.8 0.0058 2E-07 55.5 3.9 36 449-484 18-61 (181)
221 1lv7_A FTSH; alpha/beta domain 95.7 0.0038 1.3E-07 60.3 2.5 44 438-485 38-81 (257)
222 1jal_A YCHF protein; nucleotid 95.7 0.0055 1.9E-07 62.7 3.8 36 447-482 2-48 (363)
223 2ius_A DNA translocase FTSK; n 95.7 0.0039 1.3E-07 66.7 2.7 48 439-486 159-208 (512)
224 2r6a_A DNAB helicase, replicat 95.6 0.0018 6.2E-08 68.5 -0.5 50 435-484 191-241 (454)
225 3ihw_A Centg3; RAS, centaurin, 95.4 0.012 4.1E-07 53.6 4.7 36 450-485 23-67 (184)
226 4ag6_A VIRB4 ATPase, type IV s 95.4 0.0053 1.8E-07 63.4 2.5 36 446-481 34-69 (392)
227 2vf7_A UVRA2, excinuclease ABC 95.4 0.0089 3.1E-07 67.6 4.3 30 435-464 24-53 (842)
228 3k53_A Ferrous iron transport 95.3 0.0062 2.1E-07 59.5 2.4 24 449-472 5-28 (271)
229 3kb2_A SPBC2 prophage-derived 95.1 0.01 3.5E-07 53.0 2.9 23 449-471 3-25 (173)
230 1gtv_A TMK, thymidylate kinase 95.0 0.0043 1.5E-07 57.8 0.2 30 449-478 2-31 (214)
231 1ypw_A Transitional endoplasmi 94.9 0.0082 2.8E-07 68.0 2.1 43 441-485 232-274 (806)
232 1vht_A Dephospho-COA kinase; s 94.9 0.013 4.4E-07 55.0 3.1 24 446-469 3-26 (218)
233 2rhm_A Putative kinase; P-loop 94.9 0.011 3.6E-07 54.0 2.5 27 445-471 3-29 (193)
234 2ygr_A Uvrabc system protein A 94.8 0.014 4.7E-07 66.8 3.8 30 435-464 34-63 (993)
235 2r6f_A Excinuclease ABC subuni 94.8 0.014 4.8E-07 66.6 3.7 30 435-464 32-61 (972)
236 3cf0_A Transitional endoplasmi 94.7 0.01 3.6E-07 58.9 2.1 40 443-484 45-84 (301)
237 1qhx_A CPT, protein (chloramph 94.7 0.016 5.5E-07 52.2 3.1 26 447-472 3-28 (178)
238 1kht_A Adenylate kinase; phosp 94.7 0.015 5.3E-07 52.7 3.0 25 447-471 3-27 (192)
239 1xjc_A MOBB protein homolog; s 94.7 0.012 4.2E-07 53.4 2.3 27 448-474 5-31 (169)
240 3lw7_A Adenylate kinase relate 94.7 0.016 5.4E-07 51.6 3.0 19 449-467 3-21 (179)
241 1gvn_B Zeta; postsegregational 94.6 0.015 5.3E-07 57.4 3.1 35 446-482 32-66 (287)
242 3pih_A Uvrabc system protein A 94.6 0.013 4.4E-07 66.9 2.7 87 435-521 12-140 (916)
243 2v54_A DTMP kinase, thymidylat 94.5 0.017 6E-07 53.2 3.0 27 445-471 2-28 (204)
244 1uf9_A TT1252 protein; P-loop, 94.5 0.015 5.2E-07 53.5 2.5 30 448-482 9-38 (203)
245 3llm_A ATP-dependent RNA helic 94.5 0.014 4.7E-07 55.6 2.2 27 443-469 72-98 (235)
246 1ex7_A Guanylate kinase; subst 94.4 0.018 6.2E-07 53.1 2.8 21 450-470 4-24 (186)
247 3b1v_A Ferrous iron uptake tra 94.4 0.019 6.3E-07 56.4 3.0 23 449-471 5-27 (272)
248 1v5w_A DMC1, meiotic recombina 94.3 0.015 5.1E-07 59.0 2.2 49 436-484 110-166 (343)
249 3iby_A Ferrous iron transport 94.3 0.026 8.7E-07 54.8 3.7 23 449-471 3-25 (256)
250 2e87_A Hypothetical protein PH 94.3 0.023 7.9E-07 57.9 3.5 25 447-471 167-191 (357)
251 2jaq_A Deoxyguanosine kinase; 94.3 0.02 7E-07 52.5 2.9 23 449-471 2-24 (205)
252 3cbq_A GTP-binding protein REM 94.3 0.03 1E-06 51.5 3.9 22 449-470 25-46 (195)
253 2erx_A GTP-binding protein DI- 94.2 0.032 1.1E-06 49.2 4.0 21 450-470 6-26 (172)
254 1ko7_A HPR kinase/phosphatase; 94.2 0.04 1.4E-06 55.1 5.0 34 435-469 133-166 (314)
255 3iij_A Coilin-interacting nucl 94.2 0.017 5.9E-07 52.3 2.2 24 445-468 9-32 (180)
256 1sky_E F1-ATPase, F1-ATP synth 94.2 0.0087 3E-07 63.1 0.1 45 435-480 140-184 (473)
257 2ze6_A Isopentenyl transferase 94.2 0.019 6.5E-07 55.5 2.5 23 449-471 3-25 (253)
258 1z0j_A RAB-22, RAS-related pro 94.2 0.024 8.3E-07 49.9 3.0 22 450-471 9-30 (170)
259 4fcw_A Chaperone protein CLPB; 94.1 0.021 7.2E-07 56.4 2.8 35 448-482 48-83 (311)
260 3q72_A GTP-binding protein RAD 94.1 0.023 7.9E-07 50.0 2.7 22 450-471 5-26 (166)
261 3lxw_A GTPase IMAP family memb 94.1 0.023 7.7E-07 54.7 2.8 23 449-471 23-45 (247)
262 2ged_A SR-beta, signal recogni 94.0 0.021 7E-07 51.9 2.3 23 449-471 50-72 (193)
263 3trf_A Shikimate kinase, SK; a 94.0 0.027 9.3E-07 51.1 3.1 25 447-471 5-29 (185)
264 2dby_A GTP-binding protein; GD 94.0 0.024 8.1E-07 58.1 2.9 21 450-470 4-24 (368)
265 2plr_A DTMP kinase, probable t 93.9 0.028 9.5E-07 51.9 3.1 28 446-473 3-30 (213)
266 2wwf_A Thymidilate kinase, put 93.9 0.026 8.8E-07 52.3 2.9 27 445-471 8-34 (212)
267 1moz_A ARL1, ADP-ribosylation 93.9 0.02 7E-07 51.3 2.1 21 449-469 20-40 (183)
268 1via_A Shikimate kinase; struc 93.9 0.022 7.4E-07 51.4 2.3 23 449-471 6-28 (175)
269 2c95_A Adenylate kinase 1; tra 93.9 0.022 7.4E-07 52.1 2.2 26 445-470 7-32 (196)
270 1ly1_A Polynucleotide kinase; 93.9 0.028 9.4E-07 50.5 2.9 22 448-469 3-24 (181)
271 1nn5_A Similar to deoxythymidy 93.8 0.028 9.5E-07 52.2 2.9 28 444-471 6-33 (215)
272 3tw8_B RAS-related protein RAB 93.8 0.03 1E-06 49.9 3.0 22 450-471 12-33 (181)
273 2nzj_A GTP-binding protein REM 93.8 0.028 9.6E-07 49.8 2.7 22 450-471 7-28 (175)
274 2z43_A DNA repair and recombin 93.8 0.02 6.7E-07 57.6 1.8 49 436-484 95-151 (324)
275 1tev_A UMP-CMP kinase; ploop, 93.8 0.031 1.1E-06 50.8 3.0 23 447-469 3-25 (196)
276 1z2a_A RAS-related protein RAB 93.6 0.027 9.3E-07 49.5 2.3 21 450-470 8-28 (168)
277 3q85_A GTP-binding protein REM 93.6 0.033 1.1E-06 49.1 2.8 22 450-471 5-26 (169)
278 1svi_A GTP-binding protein YSX 93.6 0.028 9.7E-07 51.0 2.4 23 449-471 25-47 (195)
279 1fnn_A CDC6P, cell division co 93.6 0.037 1.3E-06 56.2 3.5 35 449-483 46-82 (389)
280 2ce2_X GTPase HRAS; signaling 93.6 0.026 8.9E-07 49.3 2.0 21 450-470 6-26 (166)
281 1kao_A RAP2A; GTP-binding prot 93.5 0.029 1E-06 49.1 2.3 22 449-470 5-26 (167)
282 2qby_A CDC6 homolog 1, cell di 93.5 0.023 7.9E-07 57.5 1.8 39 445-483 43-85 (386)
283 2dyk_A GTP-binding protein; GT 93.5 0.03 1E-06 48.9 2.3 22 450-471 4-25 (161)
284 2lkc_A Translation initiation 93.5 0.041 1.4E-06 49.0 3.2 24 447-470 8-31 (178)
285 1u8z_A RAS-related protein RAL 93.5 0.03 1E-06 49.0 2.3 21 450-470 7-27 (168)
286 2vli_A Antibiotic resistance p 93.5 0.029 1E-06 50.6 2.2 26 446-471 4-29 (183)
287 2ce7_A Cell division protein F 93.4 0.016 5.5E-07 61.4 0.5 35 436-472 40-74 (476)
288 3pqc_A Probable GTP-binding pr 93.4 0.031 1E-06 50.6 2.4 23 449-471 25-47 (195)
289 3ake_A Cytidylate kinase; CMP 93.4 0.034 1.2E-06 51.3 2.5 23 449-471 4-26 (208)
290 1wf3_A GTP-binding protein; GT 93.3 0.037 1.3E-06 55.0 3.0 22 449-470 9-30 (301)
291 1c1y_A RAS-related protein RAP 93.3 0.033 1.1E-06 48.9 2.3 21 450-470 6-26 (167)
292 3t1o_A Gliding protein MGLA; G 93.3 0.035 1.2E-06 50.3 2.5 23 450-472 17-39 (198)
293 2z0h_A DTMP kinase, thymidylat 93.3 0.04 1.4E-06 50.3 2.9 23 449-471 2-24 (197)
294 2cxx_A Probable GTP-binding pr 93.3 0.041 1.4E-06 49.6 2.9 22 450-471 4-25 (190)
295 2xtp_A GTPase IMAP family memb 93.3 0.033 1.1E-06 53.6 2.4 23 449-471 24-46 (260)
296 1z08_A RAS-related protein RAB 93.3 0.033 1.1E-06 49.1 2.3 21 450-470 9-29 (170)
297 1ky3_A GTP-binding protein YPT 93.2 0.034 1.2E-06 49.6 2.3 23 449-471 10-32 (182)
298 2fn4_A P23, RAS-related protei 93.2 0.031 1.1E-06 49.8 2.0 22 449-470 11-32 (181)
299 2bwj_A Adenylate kinase 5; pho 93.2 0.029 9.8E-07 51.4 1.8 28 444-471 9-36 (199)
300 1ek0_A Protein (GTP-binding pr 93.2 0.042 1.4E-06 48.3 2.8 22 450-471 6-27 (170)
301 1g16_A RAS-related protein SEC 93.2 0.032 1.1E-06 49.1 2.0 22 450-471 6-27 (170)
302 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.035 1.2E-06 49.4 2.3 21 450-470 10-30 (177)
303 3t5d_A Septin-7; GTP-binding p 93.1 0.039 1.3E-06 53.8 2.7 22 450-471 11-32 (274)
304 2ew1_A RAS-related protein RAB 93.1 0.062 2.1E-06 49.7 3.9 21 450-470 29-49 (201)
305 1r2q_A RAS-related protein RAB 93.1 0.037 1.3E-06 48.6 2.3 21 450-470 9-29 (170)
306 1m7b_A RND3/RHOE small GTP-bin 93.0 0.052 1.8E-06 49.0 3.3 21 450-470 10-30 (184)
307 2oil_A CATX-8, RAS-related pro 93.0 0.038 1.3E-06 50.2 2.3 21 450-470 28-48 (193)
308 1nks_A Adenylate kinase; therm 93.0 0.042 1.4E-06 49.8 2.6 24 449-472 3-26 (194)
309 4dsu_A GTPase KRAS, isoform 2B 93.0 0.039 1.3E-06 49.6 2.3 22 450-471 7-28 (189)
310 3a1s_A Iron(II) transport prot 93.0 0.043 1.5E-06 53.2 2.7 23 449-471 7-29 (258)
311 1zd8_A GTP:AMP phosphotransfer 92.9 0.045 1.5E-06 51.6 2.8 26 445-470 5-30 (227)
312 3clv_A RAB5 protein, putative; 92.9 0.039 1.3E-06 50.0 2.3 21 450-470 10-30 (208)
313 3t5g_A GTP-binding protein RHE 92.9 0.066 2.2E-06 47.9 3.7 21 449-469 8-28 (181)
314 1aky_A Adenylate kinase; ATP:A 92.9 0.052 1.8E-06 50.8 3.1 26 446-471 3-28 (220)
315 2hxs_A RAB-26, RAS-related pro 92.9 0.046 1.6E-06 48.6 2.6 22 450-471 9-30 (178)
316 3bc1_A RAS-related protein RAB 92.9 0.042 1.4E-06 49.5 2.3 22 449-470 13-34 (195)
317 3i8s_A Ferrous iron transport 92.8 0.042 1.4E-06 53.7 2.4 23 449-471 5-27 (274)
318 1upt_A ARL1, ADP-ribosylation 92.8 0.043 1.5E-06 48.4 2.3 22 449-470 9-30 (171)
319 1zuh_A Shikimate kinase; alpha 92.8 0.054 1.8E-06 48.3 3.0 23 448-470 8-30 (168)
320 1ksh_A ARF-like protein 2; sma 92.8 0.054 1.8E-06 48.8 3.0 23 449-471 20-42 (186)
321 2w58_A DNAI, primosome compone 92.8 0.053 1.8E-06 49.9 3.0 31 448-478 55-85 (202)
322 1r8s_A ADP-ribosylation factor 92.8 0.045 1.5E-06 48.0 2.3 20 450-469 3-22 (164)
323 2g6b_A RAS-related protein RAB 92.7 0.045 1.5E-06 48.8 2.3 23 449-471 12-34 (180)
324 3cnl_A YLQF, putative uncharac 92.7 0.053 1.8E-06 52.7 2.9 29 448-476 100-128 (262)
325 1z0f_A RAB14, member RAS oncog 92.7 0.046 1.6E-06 48.5 2.3 22 450-471 18-39 (179)
326 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.057 2E-06 52.2 3.1 26 446-471 3-28 (260)
327 3con_A GTPase NRAS; structural 92.6 0.047 1.6E-06 49.4 2.3 22 449-470 23-44 (190)
328 2h57_A ADP-ribosylation factor 92.6 0.05 1.7E-06 49.3 2.5 23 449-471 23-45 (190)
329 2a9k_A RAS-related protein RAL 92.6 0.048 1.7E-06 48.8 2.3 21 450-470 21-41 (187)
330 3fb4_A Adenylate kinase; psych 92.6 0.058 2E-06 50.2 2.9 22 449-470 2-23 (216)
331 2il1_A RAB12; G-protein, GDP, 92.6 0.061 2.1E-06 49.0 3.0 22 450-471 29-50 (192)
332 2pbr_A DTMP kinase, thymidylat 92.5 0.059 2E-06 48.9 2.9 23 449-471 2-24 (195)
333 1vg8_A RAS-related protein RAB 92.5 0.049 1.7E-06 49.9 2.3 23 449-471 10-32 (207)
334 1nrj_B SR-beta, signal recogni 92.5 0.05 1.7E-06 50.5 2.3 23 449-471 14-36 (218)
335 3dm5_A SRP54, signal recogniti 92.4 0.06 2.1E-06 56.4 3.1 39 446-484 99-137 (443)
336 2y8e_A RAB-protein 6, GH09086P 92.4 0.057 1.9E-06 47.9 2.6 21 450-470 17-37 (179)
337 4dhe_A Probable GTP-binding pr 92.4 0.033 1.1E-06 51.9 1.0 23 449-471 31-53 (223)
338 3bos_A Putative DNA replicatio 92.4 0.056 1.9E-06 50.6 2.6 28 446-473 51-78 (242)
339 2cdn_A Adenylate kinase; phosp 92.4 0.069 2.4E-06 49.2 3.2 24 447-470 20-43 (201)
340 2bov_A RAla, RAS-related prote 92.4 0.052 1.8E-06 49.6 2.3 21 450-470 17-37 (206)
341 1ukz_A Uridylate kinase; trans 92.3 0.065 2.2E-06 49.3 2.9 23 447-469 15-37 (203)
342 2efe_B Small GTP-binding prote 92.3 0.053 1.8E-06 48.3 2.3 22 450-471 15-36 (181)
343 3iev_A GTP-binding protein ERA 92.3 0.063 2.1E-06 53.4 3.0 24 448-471 11-34 (308)
344 2wsm_A Hydrogenase expression/ 92.3 0.052 1.8E-06 50.6 2.2 23 449-471 32-54 (221)
345 3def_A T7I23.11 protein; chlor 92.3 0.055 1.9E-06 52.4 2.4 23 449-471 38-60 (262)
346 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.055 1.9E-06 48.4 2.3 21 449-469 7-27 (186)
347 3kkq_A RAS-related protein M-R 92.2 0.067 2.3E-06 47.9 2.9 21 450-470 21-41 (183)
348 1zbd_A Rabphilin-3A; G protein 92.2 0.064 2.2E-06 49.0 2.8 22 450-471 11-32 (203)
349 2gf0_A GTP-binding protein DI- 92.2 0.05 1.7E-06 49.4 2.0 22 449-470 10-31 (199)
350 3tkl_A RAS-related protein RAB 92.2 0.067 2.3E-06 48.4 2.9 22 450-471 19-40 (196)
351 2gf9_A RAS-related protein RAB 92.2 0.056 1.9E-06 48.9 2.3 22 450-471 25-46 (189)
352 3dl0_A Adenylate kinase; phosp 92.2 0.068 2.3E-06 49.8 2.9 22 449-470 2-23 (216)
353 4bas_A ADP-ribosylation factor 92.2 0.071 2.4E-06 48.4 3.0 22 449-470 19-40 (199)
354 1qf9_A UMP/CMP kinase, protein 92.2 0.066 2.3E-06 48.4 2.7 24 447-470 6-29 (194)
355 1zak_A Adenylate kinase; ATP:A 92.2 0.057 1.9E-06 50.6 2.3 24 447-470 5-28 (222)
356 2bme_A RAB4A, RAS-related prot 92.2 0.063 2.1E-06 48.2 2.5 22 449-470 12-33 (186)
357 2pt5_A Shikimate kinase, SK; a 92.1 0.073 2.5E-06 47.2 2.9 23 449-471 2-24 (168)
358 2qu8_A Putative nucleolar GTP- 92.1 0.072 2.5E-06 50.0 3.0 23 449-471 31-53 (228)
359 4djt_A GTP-binding nuclear pro 92.1 0.072 2.4E-06 49.4 2.9 22 450-471 14-35 (218)
360 1e6c_A Shikimate kinase; phosp 92.1 0.06 2.1E-06 48.0 2.3 23 449-471 4-26 (173)
361 3v9p_A DTMP kinase, thymidylat 92.1 0.062 2.1E-06 51.1 2.5 29 444-472 22-50 (227)
362 1jwy_B Dynamin A GTPase domain 92.1 0.058 2E-06 53.4 2.4 23 449-471 26-48 (315)
363 3llu_A RAS-related GTP-binding 92.0 0.069 2.4E-06 48.8 2.7 22 450-471 23-44 (196)
364 1zj6_A ADP-ribosylation factor 92.0 0.065 2.2E-06 48.4 2.5 36 449-484 18-61 (187)
365 2o52_A RAS-related protein RAB 92.0 0.066 2.2E-06 49.2 2.5 21 450-470 28-48 (200)
366 2fg5_A RAB-22B, RAS-related pr 91.9 0.057 2E-06 49.1 2.0 21 450-470 26-46 (192)
367 3oes_A GTPase rhebl1; small GT 91.9 0.058 2E-06 49.5 2.0 23 449-471 26-48 (201)
368 2cjw_A GTP-binding protein GEM 91.9 0.064 2.2E-06 49.1 2.3 21 449-469 8-28 (192)
369 3bwd_D RAC-like GTP-binding pr 91.9 0.065 2.2E-06 47.8 2.3 23 449-471 10-32 (182)
370 2a5j_A RAS-related protein RAB 91.9 0.065 2.2E-06 48.6 2.3 22 450-471 24-45 (191)
371 1gwn_A RHO-related GTP-binding 91.9 0.088 3E-06 48.8 3.3 21 450-470 31-51 (205)
372 1z06_A RAS-related protein RAB 91.7 0.068 2.3E-06 48.3 2.3 21 450-470 23-43 (189)
373 3c5c_A RAS-like protein 12; GD 91.7 0.1 3.5E-06 47.2 3.5 28 450-477 24-56 (187)
374 3dz8_A RAS-related protein RAB 91.7 0.063 2.1E-06 48.7 2.0 22 450-471 26-47 (191)
375 2bcg_Y Protein YP2, GTP-bindin 91.7 0.062 2.1E-06 49.3 2.0 22 449-470 10-31 (206)
376 2h17_A ADP-ribosylation factor 91.7 0.064 2.2E-06 48.2 2.1 35 450-484 24-66 (181)
377 2grj_A Dephospho-COA kinase; T 91.7 0.084 2.9E-06 48.8 2.9 24 447-470 12-35 (192)
378 1zd9_A ADP-ribosylation factor 91.7 0.07 2.4E-06 48.3 2.3 21 450-470 25-45 (188)
379 4edh_A DTMP kinase, thymidylat 91.7 0.09 3.1E-06 49.4 3.1 29 445-473 4-32 (213)
380 1x3s_A RAS-related protein RAB 91.7 0.071 2.4E-06 48.1 2.3 22 449-470 17-38 (195)
381 2xb4_A Adenylate kinase; ATP-b 91.6 0.085 2.9E-06 49.7 2.9 22 449-470 2-23 (223)
382 2atv_A RERG, RAS-like estrogen 91.6 0.071 2.4E-06 48.6 2.3 22 449-470 30-51 (196)
383 2iyv_A Shikimate kinase, SK; t 91.6 0.072 2.5E-06 48.2 2.3 23 448-470 3-25 (184)
384 3reg_A RHO-like small GTPase; 91.6 0.088 3E-06 47.8 2.8 23 449-471 25-47 (194)
385 2p5s_A RAS and EF-hand domain 91.6 0.073 2.5E-06 48.7 2.3 23 449-471 30-52 (199)
386 2v3c_C SRP54, signal recogniti 91.6 0.047 1.6E-06 57.2 1.1 37 448-484 100-136 (432)
387 2q3h_A RAS homolog gene family 91.5 0.087 3E-06 48.1 2.8 22 449-470 22-43 (201)
388 2f7s_A C25KG, RAS-related prot 91.5 0.086 3E-06 48.8 2.8 22 450-471 28-49 (217)
389 1a7j_A Phosphoribulokinase; tr 91.5 0.061 2.1E-06 53.1 1.8 26 446-471 4-29 (290)
390 2b6h_A ADP-ribosylation factor 91.4 0.089 3.1E-06 47.9 2.7 22 449-470 31-52 (192)
391 3tlx_A Adenylate kinase 2; str 91.4 0.096 3.3E-06 50.1 3.0 23 447-469 29-51 (243)
392 2fu5_C RAS-related protein RAB 91.4 0.063 2.1E-06 48.1 1.6 23 449-471 10-32 (183)
393 2fh5_B SR-beta, signal recogni 91.4 0.096 3.3E-06 48.4 2.9 22 449-470 9-30 (214)
394 3cph_A RAS-related protein SEC 91.3 0.08 2.7E-06 48.7 2.3 22 449-470 22-43 (213)
395 1h65_A Chloroplast outer envel 91.3 0.082 2.8E-06 51.3 2.5 23 449-471 41-63 (270)
396 2j1l_A RHO-related GTP-binding 91.3 0.084 2.9E-06 49.0 2.5 21 450-470 37-57 (214)
397 2iwr_A Centaurin gamma 1; ANK 91.2 0.063 2.2E-06 47.8 1.4 21 450-470 10-30 (178)
398 3b9p_A CG5977-PA, isoform A; A 91.1 0.095 3.3E-06 51.3 2.8 26 446-471 53-78 (297)
399 2aka_B Dynamin-1; fusion prote 91.1 0.084 2.9E-06 51.7 2.4 23 449-471 28-50 (299)
400 3lv8_A DTMP kinase, thymidylat 91.0 0.11 3.6E-06 49.8 2.9 28 446-473 26-53 (236)
401 1uj2_A Uridine-cytidine kinase 91.0 0.1 3.6E-06 50.0 2.9 24 448-471 23-46 (252)
402 2fv8_A H6, RHO-related GTP-bin 91.0 0.08 2.7E-06 48.8 2.0 23 449-471 27-49 (207)
403 2x77_A ADP-ribosylation factor 90.9 0.088 3E-06 47.5 2.1 22 449-470 24-45 (189)
404 4tmk_A Protein (thymidylate ki 90.9 0.11 3.8E-06 48.8 2.9 28 446-473 2-29 (213)
405 2xau_A PRE-mRNA-splicing facto 90.9 0.063 2.2E-06 60.5 1.3 32 444-475 106-137 (773)
406 4gzl_A RAS-related C3 botulinu 90.8 0.11 3.6E-06 47.9 2.6 29 449-477 32-65 (204)
407 3tmk_A Thymidylate kinase; pho 90.8 0.11 3.7E-06 49.0 2.7 29 445-473 3-31 (216)
408 4a1f_A DNAB helicase, replicat 90.8 0.059 2E-06 54.5 0.9 47 435-481 34-80 (338)
409 4dcu_A GTP-binding protein ENG 90.7 0.1 3.6E-06 54.8 2.8 23 449-471 25-47 (456)
410 3be4_A Adenylate kinase; malar 90.7 0.11 3.8E-06 48.6 2.7 24 447-470 5-28 (217)
411 1e4v_A Adenylate kinase; trans 90.6 0.11 3.9E-06 48.3 2.6 21 450-470 3-23 (214)
412 2f6r_A COA synthase, bifunctio 90.6 0.11 3.8E-06 50.9 2.6 23 447-469 75-97 (281)
413 2gco_A H9, RHO-related GTP-bin 90.5 0.12 3.9E-06 47.5 2.6 21 450-470 28-48 (201)
414 2yc2_C IFT27, small RAB-relate 90.5 0.061 2.1E-06 49.1 0.7 22 449-470 22-43 (208)
415 2atx_A Small GTP binding prote 90.5 0.097 3.3E-06 47.4 2.0 22 449-470 20-41 (194)
416 2g3y_A GTP-binding protein GEM 90.5 0.12 4.2E-06 48.3 2.7 22 449-470 39-60 (211)
417 1l8q_A Chromosomal replication 90.3 0.092 3.1E-06 52.3 1.8 27 448-474 38-64 (324)
418 3a8t_A Adenylate isopentenyltr 90.2 0.16 5.5E-06 51.1 3.4 27 446-472 39-65 (339)
419 2hf9_A Probable hydrogenase ni 90.2 0.11 3.9E-06 48.3 2.3 23 449-471 40-62 (226)
420 3p32_A Probable GTPase RV1496/ 90.2 0.13 4.5E-06 52.2 2.9 26 447-472 79-104 (355)
421 1njg_A DNA polymerase III subu 90.2 0.048 1.6E-06 50.8 -0.4 37 436-472 31-70 (250)
422 2qmh_A HPR kinase/phosphorylas 90.2 0.21 7.2E-06 46.4 3.9 35 435-470 23-57 (205)
423 1ak2_A Adenylate kinase isoenz 90.2 0.15 5.2E-06 48.1 3.1 26 446-471 15-40 (233)
424 3ld9_A DTMP kinase, thymidylat 90.1 0.16 5.4E-06 48.2 3.1 29 445-473 19-47 (223)
425 3bh0_A DNAB-like replicative h 90.0 0.082 2.8E-06 52.8 1.1 36 435-470 56-91 (315)
426 3cpj_B GTP-binding protein YPT 90.0 0.12 4.3E-06 48.1 2.3 23 449-471 15-37 (223)
427 1ypw_A Transitional endoplasmi 89.9 0.05 1.7E-06 61.6 -0.6 45 439-485 503-547 (806)
428 1jbk_A CLPB protein; beta barr 89.9 0.17 5.9E-06 45.1 3.1 26 447-472 43-68 (195)
429 2hup_A RAS-related protein RAB 89.9 0.12 4E-06 47.5 2.0 21 450-470 32-52 (201)
430 2h92_A Cytidylate kinase; ross 89.9 0.14 4.6E-06 47.7 2.5 24 447-470 3-26 (219)
431 1sxj_D Activator 1 41 kDa subu 89.8 0.054 1.9E-06 54.3 -0.4 37 436-472 45-83 (353)
432 3zvl_A Bifunctional polynucleo 89.8 0.17 5.8E-06 52.6 3.4 35 445-483 256-290 (416)
433 1puj_A YLQF, conserved hypothe 89.7 0.18 6E-06 49.6 3.3 25 448-472 121-145 (282)
434 1ltq_A Polynucleotide kinase; 89.7 0.15 5.3E-06 50.0 2.9 22 448-469 3-24 (301)
435 1u94_A RECA protein, recombina 89.7 0.16 5.4E-06 51.7 3.0 49 435-483 49-100 (356)
436 3l0i_B RAS-related protein RAB 89.6 0.071 2.4E-06 48.8 0.3 22 450-471 36-57 (199)
437 1p5z_B DCK, deoxycytidine kina 89.6 0.15 5.2E-06 49.1 2.7 27 445-471 22-48 (263)
438 3umf_A Adenylate kinase; rossm 89.6 0.14 4.7E-06 48.3 2.3 26 445-470 27-52 (217)
439 2orw_A Thymidine kinase; TMTK, 89.5 0.17 5.8E-06 46.2 2.8 22 446-467 2-24 (184)
440 2j0v_A RAC-like GTP-binding pr 89.4 0.16 5.4E-06 46.8 2.6 22 449-470 11-32 (212)
441 3exa_A TRNA delta(2)-isopenten 89.4 0.18 6.2E-06 50.3 3.1 25 447-471 3-27 (322)
442 1wxq_A GTP-binding protein; st 89.4 0.15 5E-06 52.8 2.5 22 450-471 3-24 (397)
443 2ocp_A DGK, deoxyguanosine kin 89.3 0.17 5.9E-06 48.0 2.8 26 446-471 1-26 (241)
444 3d3q_A TRNA delta(2)-isopenten 89.3 0.17 6E-06 51.0 2.9 25 448-472 8-32 (340)
445 2i1q_A DNA repair and recombin 89.2 0.19 6.7E-06 50.0 3.2 34 436-469 86-120 (322)
446 3q3j_B RHO-related GTP-binding 89.2 0.16 5.3E-06 47.3 2.3 28 450-477 30-62 (214)
447 1lnz_A SPO0B-associated GTP-bi 88.8 0.24 8.2E-06 50.1 3.5 45 438-482 149-204 (342)
448 3h4m_A Proteasome-activating n 88.7 0.19 6.6E-06 48.7 2.7 28 445-472 49-76 (285)
449 3sjy_A Translation initiation 88.4 0.22 7.5E-06 51.4 3.0 22 449-470 10-31 (403)
450 3tqf_A HPR(Ser) kinase; transf 88.4 0.35 1.2E-05 43.9 4.0 34 435-469 5-38 (181)
451 3crm_A TRNA delta(2)-isopenten 88.3 0.22 7.6E-06 49.9 2.9 24 448-471 6-29 (323)
452 2hjg_A GTP-binding protein ENG 88.3 0.21 7.3E-06 52.1 2.9 23 449-471 5-27 (436)
453 2x2e_A Dynamin-1; nitration, h 88.2 0.2 6.9E-06 50.7 2.5 23 449-471 33-55 (353)
454 2z4s_A Chromosomal replication 88.2 0.18 6E-06 52.9 2.1 26 447-472 130-155 (440)
455 2p65_A Hypothetical protein PF 88.0 0.21 7.2E-06 44.4 2.3 27 447-473 43-69 (187)
456 3gj0_A GTP-binding nuclear pro 88.0 0.16 5.4E-06 47.2 1.5 27 450-476 18-49 (221)
457 3th5_A RAS-related C3 botulinu 87.8 0.097 3.3E-06 48.0 0.0 22 449-470 32-53 (204)
458 2qz4_A Paraplegin; AAA+, SPG7, 87.6 0.28 9.6E-06 46.7 3.0 25 447-471 39-63 (262)
459 3foz_A TRNA delta(2)-isopenten 87.6 0.29 9.7E-06 48.7 3.1 24 448-471 11-34 (316)
460 4hlc_A DTMP kinase, thymidylat 87.5 0.29 1E-05 45.5 3.0 26 447-472 2-27 (205)
461 3sr0_A Adenylate kinase; phosp 87.4 0.29 9.8E-06 45.7 2.9 22 449-470 2-23 (206)
462 4a9a_A Ribosome-interacting GT 87.1 0.31 1E-05 49.9 3.1 37 449-485 74-121 (376)
463 2zts_A Putative uncharacterize 87.0 0.37 1.3E-05 45.3 3.5 33 436-468 18-51 (251)
464 3r7w_A Gtpase1, GTP-binding pr 87.0 0.34 1.2E-05 48.0 3.3 22 449-470 5-26 (307)
465 3ec1_A YQEH GTPase; atnos1, at 86.9 0.24 8.3E-06 50.5 2.2 25 446-470 161-185 (369)
466 2j37_W Signal recognition part 86.8 0.3 1E-05 52.0 2.9 26 446-471 100-125 (504)
467 3gmt_A Adenylate kinase; ssgci 86.8 0.3 1E-05 46.4 2.6 21 449-469 10-30 (230)
468 3geh_A MNME, tRNA modification 86.6 0.22 7.6E-06 52.5 1.8 24 447-470 224-247 (462)
469 2v1u_A Cell division control p 86.6 0.25 8.5E-06 49.8 2.1 38 446-483 43-87 (387)
470 3io5_A Recombination and repai 86.6 0.18 6E-06 50.5 0.9 74 443-521 25-102 (333)
471 2qpt_A EH domain-containing pr 86.5 0.28 9.7E-06 52.9 2.6 24 448-471 66-89 (550)
472 2r62_A Cell division protease 86.4 0.1 3.6E-06 50.2 -0.8 22 450-471 47-68 (268)
473 1kk1_A EIF2gamma; initiation o 86.1 0.35 1.2E-05 49.9 3.0 22 449-470 12-33 (410)
474 3h2y_A GTPase family protein; 85.9 0.26 8.9E-06 50.3 1.8 25 446-470 159-183 (368)
475 1f5n_A Interferon-induced guan 85.8 0.35 1.2E-05 52.5 2.8 24 448-471 39-62 (592)
476 2q6t_A DNAB replication FORK h 85.6 0.21 7.2E-06 52.3 1.0 39 435-473 188-226 (444)
477 2hjg_A GTP-binding protein ENG 85.6 0.36 1.2E-05 50.4 2.8 23 449-471 177-199 (436)
478 2ck3_D ATP synthase subunit be 85.3 0.39 1.3E-05 50.5 2.8 35 436-471 143-177 (482)
479 3o47_A ADP-ribosylation factor 85.3 0.36 1.2E-05 48.3 2.5 23 449-471 167-189 (329)
480 1yrb_A ATP(GTP)binding protein 85.0 0.46 1.6E-05 45.3 3.0 26 447-472 14-39 (262)
481 3e1s_A Exodeoxyribonuclease V, 85.0 0.37 1.3E-05 52.2 2.6 35 446-480 203-237 (574)
482 3eph_A TRNA isopentenyltransfe 85.0 0.41 1.4E-05 49.4 2.8 24 448-471 3-26 (409)
483 3gee_A MNME, tRNA modification 84.9 0.35 1.2E-05 51.1 2.3 23 449-471 235-257 (476)
484 2c78_A Elongation factor TU-A; 84.8 0.36 1.2E-05 49.8 2.3 22 449-470 13-34 (405)
485 1s0u_A EIF-2-gamma, translatio 84.6 0.46 1.6E-05 49.0 3.0 23 449-471 10-32 (408)
486 3dpu_A RAB family protein; roc 84.6 0.42 1.4E-05 51.2 2.8 22 450-471 44-65 (535)
487 3l0o_A Transcription terminati 84.5 0.45 1.5E-05 48.8 2.8 34 439-472 167-200 (427)
488 3n70_A Transport activator; si 84.5 0.41 1.4E-05 41.5 2.2 39 447-485 24-62 (145)
489 1d2e_A Elongation factor TU (E 84.2 0.4 1.4E-05 49.3 2.3 22 449-470 5-26 (397)
490 1xzp_A Probable tRNA modificat 83.9 0.26 9E-06 52.2 0.8 38 447-484 243-292 (482)
491 2chg_A Replication factor C sm 83.9 0.5 1.7E-05 43.0 2.7 22 450-471 41-62 (226)
492 3uk6_A RUVB-like 2; hexameric 83.7 0.59 2E-05 47.0 3.3 39 446-484 69-107 (368)
493 3pvs_A Replication-associated 83.7 0.34 1.2E-05 50.8 1.5 31 444-474 45-77 (447)
494 2qgz_A Helicase loader, putati 83.4 0.6 2.1E-05 46.3 3.2 26 447-472 152-177 (308)
495 1xp8_A RECA protein, recombina 83.2 0.53 1.8E-05 48.0 2.7 48 435-482 60-110 (366)
496 2h5e_A Peptide chain release f 83.2 0.44 1.5E-05 51.1 2.2 22 448-469 14-35 (529)
497 2j69_A Bacterial dynamin-like 83.2 0.53 1.8E-05 52.2 2.9 23 449-471 71-93 (695)
498 1mky_A Probable GTP-binding pr 83.1 0.57 1.9E-05 48.9 3.0 36 449-484 3-50 (439)
499 1g7s_A Translation initiation 83.1 0.49 1.7E-05 51.5 2.5 22 449-470 7-28 (594)
500 2vhj_A Ntpase P4, P4; non- hyd 83.0 0.72 2.5E-05 46.1 3.5 34 437-470 113-146 (331)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.91 E-value=3.2e-24 Score=220.70 Aligned_cols=120 Identities=21% Similarity=0.362 Sum_probs=103.4
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
..+++++||+|.|++.. +.+.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 22 ~~mi~v~~ls~~y~~~~-----------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~ 90 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT-----------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ 90 (366)
T ss_dssp -CCEEEEEEEEEEECSS-----------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CceEEEEeEEEEeCCCC-----------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence 45799999999997531 1346999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 484 SIRSSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 484 ~i~~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
++.... +..+.|+.+||+||++.+++.+||+||+.+...++|.++++.++.
T Consensus 91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~ 143 (366)
T 3tui_C 91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 143 (366)
T ss_dssp ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHH
T ss_pred ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 986322 234567899999999999999999999999998888887665544
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=8.9e-24 Score=218.74 Aligned_cols=112 Identities=21% Similarity=0.397 Sum_probs=99.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. .||+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 3 ~l~~~~l~~~yg~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEeEEEEECCE---------------EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 48999999999642 699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v 535 (536)
... ...++.+||+||+..||++|||+||+.+..+.+|.+++++++.+
T Consensus 68 ~~~---~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v 114 (381)
T 3rlf_A 68 NDT---PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV 114 (381)
T ss_dssp TTC---CGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHH
T ss_pred CCC---CHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 532 23357899999999999999999999999999998877655443
No 3
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1.7e-23 Score=206.67 Aligned_cols=110 Identities=25% Similarity=0.399 Sum_probs=97.4
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++||+|.|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 13 ~~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 77 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK 77 (256)
T ss_dssp -CCEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CCeEEEEEEEEEECCE---------------EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 3579999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
++.. ...+.++.+||+||++.+++.+||+||+.++...++.+.++
T Consensus 78 ~~~~--~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 122 (256)
T 1vpl_A 78 NVVE--EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE 122 (256)
T ss_dssp ETTT--CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHH
T ss_pred ECCc--cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHH
Confidence 9853 34556788999999999999999999999988777776543
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.89 E-value=6.7e-24 Score=218.17 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=98.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 4 ~l~i~~ls~~y~~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT---------------PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 58999999999642 699999999999999999999999999999999999999999999999998
Q ss_pred CCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 486 RSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 486 ~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
... ......++++||+||+..+|+++||+||+.+..+.++.++++.++.
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~ 118 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR 118 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHH
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHH
Confidence 321 2233456789999999999999999999999877777766554433
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.89 E-value=3.1e-23 Score=205.53 Aligned_cols=110 Identities=21% Similarity=0.487 Sum_probs=95.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~~~---------------~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFGSL---------------EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEES
T ss_pred eEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 69999999999642 599999999999999999999999999999999999999999999999998
Q ss_pred C-CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCChHh
Q 009374 486 R-SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLPLDS 530 (536)
Q Consensus 486 ~-~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~~~~ 530 (536)
. +..+....++.+||+||++.+++.+||+||+.+.. +.++.+.++
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 135 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREK 135 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHH
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 4 11234456778999999999999999999999865 666766543
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=3.5e-23 Score=200.62 Aligned_cols=110 Identities=20% Similarity=0.362 Sum_probs=95.0
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~~~---------------~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIRGY---------------EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEEeEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 68999999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCccc--HHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374 486 RSSVS--MTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS 530 (536)
Q Consensus 486 ~~~~~--~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~ 530 (536)
..... ....+ +.+||+||++.+++.+||+||+.+....++.+.++
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 116 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKE 116 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHH
Confidence 53221 12333 67999999999999999999999987777766443
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=2.9e-23 Score=213.45 Aligned_cols=112 Identities=23% Similarity=0.464 Sum_probs=98.7
Q ss_pred CceEEEeeeEEEc-CCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 404 NVAVQIRGLVKTF-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 404 ~~~i~~~~l~k~y-~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
...++++||+|.| ++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 12 ~~~l~~~~l~~~y~g~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 76 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGA---------------RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76 (355)
T ss_dssp CEEEEEEEEEECCTTST---------------TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CceEEEEEEEEEEcCCC---------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 4579999999999 432 599999999999999999999999999999999999999999999999
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
.++.. ....++.+||+||+..+|+.+||+||+.+..+.++.++++.++
T Consensus 77 ~~i~~---~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~ 124 (355)
T 1z47_A 77 KRVTD---LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124 (355)
T ss_dssp EECTT---CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred EECCc---CChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 99853 2234678999999999999999999999988888887655443
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.89 E-value=5.5e-23 Score=204.97 Aligned_cols=116 Identities=25% Similarity=0.317 Sum_probs=98.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||+|.|++. ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~l~i~~ls~~y~~~--------------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~ 71 (275)
T 3gfo_A 6 YILKVEELNYNYSDG--------------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71 (275)
T ss_dssp EEEEEEEEEEECTTS--------------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cEEEEEEEEEEECCC--------------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE
Confidence 479999999999653 149999999999999999999999999999999999999999999999999
Q ss_pred cCC-cccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 485 IRS-SVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 485 i~~-~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
+.. ..+..+.|+.+||+||++ ..+..+||+||+.+.....|.+.++.++.
T Consensus 72 i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 123 (275)
T 3gfo_A 72 IDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR 123 (275)
T ss_dssp CCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH
T ss_pred CCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 842 123445778999999985 23347999999999988888877655443
No 9
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=5.2e-23 Score=204.06 Aligned_cols=110 Identities=18% Similarity=0.379 Sum_probs=94.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred eEEEeeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 69999999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CC----------c--ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCChHh
Q 009374 486 RS----------S--VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLPLDS 530 (536)
Q Consensus 486 ~~----------~--~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~~~~ 530 (536)
.. . .+....|+.+||+||++.+++.+||+||+.+.. ..++.+.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 128 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD 128 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHH
Confidence 41 0 112345778999999999999999999999864 566766543
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.89 E-value=5.7e-23 Score=212.03 Aligned_cols=110 Identities=20% Similarity=0.381 Sum_probs=97.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (362)
T 2it1_A 3 EIKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV 67 (362)
T ss_dssp CEEEEEEEEESSSS---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 48999999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
... ...++++||+||+..+|++|||+||+.+..+.++.++++.++
T Consensus 68 ~~~---~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~ 112 (362)
T 2it1_A 68 TEL---PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK 112 (362)
T ss_dssp TTS---CGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred CcC---CHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 532 223578999999999999999999999988888887665443
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.89 E-value=7.5e-23 Score=199.70 Aligned_cols=113 Identities=23% Similarity=0.323 Sum_probs=93.7
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++||+|.|++.. +...+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~~-----------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC-----------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence 78999999996431 1236999999999999999999999999999999999999999999999999985
Q ss_pred CcccH--HHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhc---CCChHh
Q 009374 487 SSVSM--TNI-QKSIGVCPQFNILWDALSGEEHLHLFANIK---GLPLDS 530 (536)
Q Consensus 487 ~~~~~--~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk---g~~~~~ 530 (536)
..... .+. ++.+||+||++.+++.+||+||+.+....+ +.+.++
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 120 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHH
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHH
Confidence 32221 122 456999999999999999999999977654 444444
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=6.4e-23 Score=212.71 Aligned_cols=113 Identities=19% Similarity=0.353 Sum_probs=97.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEEC
Confidence 48999999999642 599999999999999999999999999999999999999999999999987
Q ss_pred CCcc---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 486 RSSV---SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 486 ~~~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
.... .....++++||+||+..+|+++||+||+.+..+.++.++++.++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~ 118 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 3200 02233678999999999999999999999998888887665443
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.88 E-value=3.1e-23 Score=213.73 Aligned_cols=108 Identities=23% Similarity=0.385 Sum_probs=94.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|.|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV---------------KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV 67 (359)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC
Confidence 48999999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~ 531 (536)
... ...++++||+||+..+|+++||+||+.+..+.++.++++.
T Consensus 68 ~~~---~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~ 110 (359)
T 2yyz_A 68 NDI---PPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEV 110 (359)
T ss_dssp TTS---CGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHT
T ss_pred CCC---ChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 532 2235789999999999999999999999877777665443
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=9.2e-23 Score=199.76 Aligned_cols=102 Identities=27% Similarity=0.456 Sum_probs=89.5
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred ceEEEEeEEEEECCe---------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 469999999999642 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+......+..++.+||+||++.+++.+||+||+.+..
T Consensus 70 ~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred CCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence 8532222223566999999999999999999998864
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.88 E-value=5.2e-23 Score=203.60 Aligned_cols=104 Identities=21% Similarity=0.256 Sum_probs=91.4
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 70 (257)
T 1g6h_A 6 EILRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD 70 (257)
T ss_dssp EEEEEEEEEEEETTE---------------EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cEEEEeeeEEEECCE---------------eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 469999999999642 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
+......+..++.+||+||++.+++.+||+||+.+....
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 109 (257)
T 1g6h_A 71 ITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC 109 (257)
T ss_dssp CTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred CCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence 853222334567899999999999999999999886543
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=5.9e-23 Score=212.62 Aligned_cols=110 Identities=26% Similarity=0.421 Sum_probs=88.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 11 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred eEEEEEEEEEECCE---------------EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 48999999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
... ...++++||+||+..+|++|||+||+.+..+.++.++++.++
T Consensus 76 ~~~---~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~ 120 (372)
T 1v43_A 76 TYL---PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK 120 (372)
T ss_dssp TTS---CGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHH
T ss_pred CCC---ChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 532 223578999999999999999999999977667777655443
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=4.8e-23 Score=212.30 Aligned_cols=113 Identities=22% Similarity=0.363 Sum_probs=96.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcc--eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYH--AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~--al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.++++||+|.|++. . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 3 ~l~i~~l~~~y~~~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 67 (353)
T 1oxx_K 3 RIIVKNVSKVFKKG---------------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67 (353)
T ss_dssp CEEEEEEEEEEGGG---------------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEeEEEEECCE---------------eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 48999999999542 5 999999999999999999999999999999999999999999999999
Q ss_pred ecCCc--ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 484 SIRSS--VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 484 ~i~~~--~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
++... ......++++||+||+..+|+++||+||+.+..+.++.++++.++
T Consensus 68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~ 119 (353)
T 1oxx_K 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119 (353)
T ss_dssp EEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH
T ss_pred ECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 87320 002345678999999999999999999999987777777655443
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.86 E-value=4.8e-22 Score=197.44 Aligned_cols=105 Identities=22% Similarity=0.293 Sum_probs=93.2
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++|.|++. .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+
T Consensus 9 ~~~l~~~~l~~~~~~~---------------~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 73 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQ---------------ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ 73 (266)
T ss_dssp CCEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTE
T ss_pred cceEEEEeEEEEeCCe---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence 3479999999999653 6999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
++.. ...++.++.+||+||++.+++.+||+||+.+.....
T Consensus 74 ~~~~-~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 74 NLNS-WQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp ETTT-SCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred ECCc-CCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 9863 334556778999999999989999999999875543
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.86 E-value=3.8e-22 Score=204.93 Aligned_cols=103 Identities=20% Similarity=0.402 Sum_probs=92.1
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++ + +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~---------------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWKN---------------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECSS---------------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEECC---------------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 789999999942 3 899999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
. ....++++||+||+..+|++|||+||+.+..+.++.++
T Consensus 66 ~---~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 66 D---LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp T---SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred C---CchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 3 22346789999999999999999999999877766554
No 20
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.86 E-value=5.8e-22 Score=190.41 Aligned_cols=100 Identities=24% Similarity=0.358 Sum_probs=90.6
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++|++|.|++ .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 8 ~~~l~~~~ls~~y~~----------------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 71 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK----------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 71 (214)
T ss_dssp -CEEEEEEEEEESSS----------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CceEEEEEEEEEeCC----------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 457999999999953 4999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
++. ..++.+||+||++.+++.+||+||+.++...++
T Consensus 72 ~~~------~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 72 PIT------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp EGG------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred Ehh------hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence 873 257789999999999999999999999876655
No 21
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.85 E-value=2.6e-21 Score=190.21 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=87.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++||+|.|++.. ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 7 ~~~~~~l~~~y~~~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS-------------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESSTTS-------------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred ceeEEEEEEEeCCCC-------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 589999999994210 1599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. .+..+.|+.+||+||++.+++ +||+||+.+.
T Consensus 74 ~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 106 (247)
T 2ff7_A 74 AL-ADPNWLRRQVGVVLQDNVLLN-RSIIDNISLA 106 (247)
T ss_dssp TT-SCHHHHHHHEEEECSSCCCTT-SBHHHHHTTT
T ss_pred hh-CCHHHHHhcEEEEeCCCcccc-ccHHHHHhcc
Confidence 53 234556788999999999986 6999999875
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.84 E-value=3.5e-21 Score=191.35 Aligned_cols=103 Identities=18% Similarity=0.294 Sum_probs=87.1
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+++++||+|.|+... ...+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT----------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK 71 (266)
T ss_dssp CEEEEEEEEEESTTS----------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEEEEEEEecCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 478999999996210 0002599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFAN 522 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~ 522 (536)
.. . ..++.+||+||++ .++..+||+||+.+...
T Consensus 72 ~~---~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 105 (266)
T 2yz2_A 72 KG---Y-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVK 105 (266)
T ss_dssp CH---H-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred ch---H-HhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence 42 2 5678899999995 56678999999998654
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.84 E-value=7.1e-21 Score=189.21 Aligned_cols=102 Identities=22% Similarity=0.324 Sum_probs=87.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcC
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYG 482 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g 482 (536)
..++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|
T Consensus 19 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDK---------------AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp -CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred ceEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 469999999999542 599999999999999999999999999999999999 579999999999
Q ss_pred EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.++.........++.+||+||++.+++.+|++|++.+..
T Consensus 84 ~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~ 122 (267)
T 2zu0_C 84 KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL 122 (267)
T ss_dssp EEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHH
T ss_pred EECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHH
Confidence 998432212222456999999999999999999998753
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.84 E-value=6.1e-21 Score=187.92 Aligned_cols=101 Identities=27% Similarity=0.371 Sum_probs=87.4
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcCE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGF 483 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g~ 483 (536)
+++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~ 67 (250)
T 2d2e_A 3 QLEIRDLWASIDGE---------------TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE 67 (250)
T ss_dssp EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTE
T ss_pred eEEEEeEEEEECCE---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence 58999999999642 599999999999999999999999999999999998 8999999999999
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
++......+..++.+||+||++.+++.+||+||+.+..
T Consensus 68 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 105 (250)
T 2d2e_A 68 NILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL 105 (250)
T ss_dssp ECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHH
T ss_pred ECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHH
Confidence 98532222223556999999999999999999998865
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.84 E-value=1.8e-21 Score=190.98 Aligned_cols=98 Identities=21% Similarity=0.317 Sum_probs=85.8
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|++. ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~--------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYDDS--------------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSSSS--------------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST
T ss_pred EEEEEEEEEeCCC--------------CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 7899999999422 15999999999999999999999999999999999999999999999999985
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
. .+....|+.+||+||++.+++ .||+||+.+.
T Consensus 68 ~-~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~ 99 (243)
T 1mv5_A 68 N-ISLENWRSQIGFVSQDSAIMA-GTIRENLTYG 99 (243)
T ss_dssp T-TSCSCCTTTCCEECCSSCCCC-EEHHHHTTSC
T ss_pred h-CCHHHHHhhEEEEcCCCcccc-ccHHHHHhhh
Confidence 3 222345778999999999987 5999999875
No 26
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.84 E-value=5.9e-21 Score=192.84 Aligned_cols=101 Identities=21% Similarity=0.362 Sum_probs=90.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||++.|++. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~~~--------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYADG--------------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESSTT--------------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCCC--------------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 359999999999643 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+.. .+...+|+.+||+||++.+|+ .||+|||.+..
T Consensus 118 i~~-~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~ 152 (306)
T 3nh6_A 118 ISQ-VTQASLRSHIGVVPQDTVLFN-DTIADNIRYGR 152 (306)
T ss_dssp TTS-BCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTS
T ss_pred ccc-CCHHHHhcceEEEecCCccCc-ccHHHHHHhhc
Confidence 964 456678899999999999995 59999998753
No 27
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.83 E-value=3.1e-21 Score=192.82 Aligned_cols=101 Identities=23% Similarity=0.286 Sum_probs=86.8
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 19 ~~~l~~~~l~~~y~~~---------------~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 83 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK---------------TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK 83 (279)
T ss_dssp CEEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB
T ss_pred CceEEEEeEEEEECCE---------------EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE
Confidence 3469999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecC--CcccHHHhhcceEEEcCCCCC--CCCCCHHHHHHHH
Q 009374 484 SIR--SSVSMTNIQKSIGVCPQFNIL--WDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~--~~~~~~~~~~~ig~~pQ~~~l--~~~lTv~e~L~~~ 520 (536)
++. . .+..+.++.+||+||++.+ .+.+||+||+.+.
T Consensus 84 ~~~~~~-~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~ 123 (279)
T 2ihy_A 84 MPGKVG-YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG 123 (279)
T ss_dssp CCC----CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred Eccccc-CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence 874 2 2345567889999998754 3457999999874
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.83 E-value=9.2e-21 Score=188.76 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=89.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||++.|++.. ...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 15 ~~l~~~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 82 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP------------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82 (271)
T ss_dssp CCEEEEEEEECCTTCT------------TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred ceEEEEEEEEEeCCCC------------CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 3699999999996410 1259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+.. .+....++.+||+||++.+++ .||+||+.+..
T Consensus 83 i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~ 117 (271)
T 2ixe_A 83 LVQ-YDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGL 117 (271)
T ss_dssp GGG-BCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTC
T ss_pred ccc-CCHHHHhccEEEEecCCcccc-ccHHHHHhhhc
Confidence 842 234456778999999999987 59999998753
No 29
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.83 E-value=1.7e-21 Score=190.51 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=86.6
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++ +++|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~-----------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLGN-----------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEETT-----------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEeCC-----------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 678999999942 59999999999 999999999999999999999999999999999999984
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
. ....++.+||+||++.+++.+||+||+.+....++
T Consensus 64 ~---~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 64 P---LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp T---SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred c---CchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence 3 22346789999999999999999999988654444
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.81 E-value=3.6e-20 Score=182.11 Aligned_cols=94 Identities=22% Similarity=0.272 Sum_probs=84.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|++|. .+++|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++
T Consensus 4 ~l~~~~l~~~-------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAES-------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEET-------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEG
T ss_pred EEEEEceEEE-------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEEC
Confidence 5889999875 1899999999999999999999999999999999999999 9999999998
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. .+..+.++.+||+||+..+++.+||+||+.+.
T Consensus 64 ~~-~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 64 EA-WSATKLALHRAYLSQQQTPPFATPVWHYLTLH 97 (249)
T ss_dssp GG-SCHHHHHHHEEEECSCCCCCTTCBHHHHHHTT
T ss_pred Cc-CCHHHHhceEEEECCCCccCCCCcHHHHHHHh
Confidence 42 23455677899999999999999999999875
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.81 E-value=3.1e-20 Score=183.92 Aligned_cols=107 Identities=22% Similarity=0.427 Sum_probs=88.4
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|++|.|++.. ..+.+++|+||+++ ||+++|+||||||||||+++|+|+. |++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~~-----------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-----------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEET-----------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCC-----------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECc
Confidence 78999999996410 01259999999999 9999999999999999999999999 99999999999984
Q ss_pred CcccHHHhhcceE-EEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374 487 SSVSMTNIQKSIG-VCPQFNILWDALSGEEHLHLFANIKGLPLDSIK 532 (536)
Q Consensus 487 ~~~~~~~~~~~ig-~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~ 532 (536)
. . .. ++.+| |+||++.+ .+|++||+.++..+.+...++++
T Consensus 69 ~--~-~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~ 109 (263)
T 2pjz_A 69 K--I-RN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFL 109 (263)
T ss_dssp G--C-SC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHH
T ss_pred c--h-HH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHH
Confidence 2 1 23 67899 99999887 89999999998765544333333
No 32
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.81 E-value=3e-20 Score=193.49 Aligned_cols=100 Identities=23% Similarity=0.341 Sum_probs=87.8
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||+|.|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|++
T Consensus 18 ~~i~~~~l~~~y~~~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG-------------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSSS-------------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCB
T ss_pred CeEEEEEEEEEecCC-------------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEE
Confidence 469999999999532 1269999999999999999999999999999999999998 99999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.. ....+.|+.+||+||+..+|+ +||+||+.++
T Consensus 84 i~~-~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~ 117 (390)
T 3gd7_A 84 WDS-ITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPN 117 (390)
T ss_dssp TTS-SCHHHHHHTEEEESCCCCCCS-EEHHHHHCTT
T ss_pred CCc-CChHHHhCCEEEEcCCcccCc-cCHHHHhhhc
Confidence 863 345567889999999999997 6999999743
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.81 E-value=6.4e-20 Score=181.59 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=87.3
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++||++.|++.. .+.+++|+||++++||+++|+||||||||||+++|+|+++| +|+|.++|.+
T Consensus 16 ~~l~i~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~ 82 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT------------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKN 82 (260)
T ss_dssp CCEEEEEEEECCTTCC------------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEE
T ss_pred CeEEEEEEEEEeCCCC------------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEE
Confidence 3599999999996521 12599999999999999999999999999999999999987 8999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.. .+....|+.+||+||++.+++ .||+||+.+.
T Consensus 83 i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 116 (260)
T 2ghi_A 83 VNK-YNRNSIRSIIGIVPQDTILFN-ETIKYNILYG 116 (260)
T ss_dssp GGG-BCHHHHHTTEEEECSSCCCCS-EEHHHHHHTT
T ss_pred hhh-cCHHHHhccEEEEcCCCcccc-cCHHHHHhcc
Confidence 842 234567888999999999986 5999999874
No 34
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.80 E-value=1.3e-19 Score=178.61 Aligned_cols=87 Identities=26% Similarity=0.329 Sum_probs=79.9
Q ss_pred eEEEeeeEEEcC-CCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 406 AVQIRGLVKTFP-GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 406 ~i~~~~l~k~y~-~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.++++|+++.|+ +. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~i~~l~~~y~~~~---------------~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQAEN---------------FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----- 63 (253)
T ss_dssp EEEEEEEEEEETTTT---------------EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----
T ss_pred eEEEeeEEEEeCCCC---------------eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----
Confidence 589999999996 32 599999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.++.+||+||++.+++.+||+||+.+..
T Consensus 64 ---------~~~~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 64 ---------VYQSIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp ---------ECSCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred ---------EeccEEEEcCCCccCCCCCHHHHHHHhh
Confidence 1456999999999999999999998864
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.79 E-value=2.3e-19 Score=174.34 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=79.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++|.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-- 69 (229)
T ss_dssp EEEEEEEEEECSSTT-------------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--
T ss_pred ceEEEEEEEEEeCCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--
Confidence 468999999999632 12599999999999999999999999999999999999999999999987
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.+||+||++.+++. ||+||+.+.
T Consensus 70 ------------~i~~v~q~~~~~~~-tv~enl~~~ 92 (229)
T 2pze_A 70 ------------RISFCSQFSWIMPG-TIKENIIFG 92 (229)
T ss_dssp ------------CEEEECSSCCCCSB-CHHHHHHTT
T ss_pred ------------EEEEEecCCcccCC-CHHHHhhcc
Confidence 38999999999886 999999874
No 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.79 E-value=2.4e-19 Score=197.37 Aligned_cols=113 Identities=19% Similarity=0.383 Sum_probs=95.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++.. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~~~-------------~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPGRE-------------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCCCC-------------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 3699999999996421 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
+.+ .+.++.|+++||+||++.+++. |++||+.+... .+.+.+++++
T Consensus 407 ~~~-~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~ 452 (582)
T 3b60_A 407 LRE-YTLASLRNQVALVSQNVHLFND-TVANNIAYART-EEYSREQIEE 452 (582)
T ss_dssp TTT-BCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCCHHHHHH
T ss_pred ccc-cCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CCCCHHHHHH
Confidence 963 3456778899999999999985 99999987531 2344444443
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.79 E-value=2.4e-19 Score=197.09 Aligned_cols=101 Identities=25% Similarity=0.380 Sum_probs=90.8
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|++++|++.. ..+++|+||++++||++||+|||||||||++++|+|+++|++|+|.++|.|
T Consensus 338 ~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 4699999999997531 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++. .+.++.|+++|||||++.+|+. |++||+.+.
T Consensus 405 ~~~-~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~ 438 (578)
T 4a82_A 405 IKD-FLTGSLRNQIGLVQQDNILFSD-TVKENILLG 438 (578)
T ss_dssp GGG-SCHHHHHHTEEEECSSCCCCSS-BHHHHHGGG
T ss_pred hhh-CCHHHHhhheEEEeCCCccCcc-cHHHHHhcC
Confidence 963 3566788999999999999987 999999774
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.79 E-value=2.2e-19 Score=197.68 Aligned_cols=113 Identities=19% Similarity=0.338 Sum_probs=94.8
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++.. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~~~-------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKE-------------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 4699999999996421 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~ 533 (536)
+.+ .+.++.|+++||+||++.+|+. |++||+.+... .+.+.+++++
T Consensus 407 ~~~-~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~ 452 (582)
T 3b5x_A 407 VRD-YKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQ 452 (582)
T ss_pred hhh-CCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CCCCHHHHHH
Confidence 853 3456788899999999999975 99999988531 2334444443
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.78 E-value=2.6e-19 Score=197.56 Aligned_cols=101 Identities=23% Similarity=0.374 Sum_probs=89.9
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++|+++.|+++. +..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++.
T Consensus 342 i~~~~v~~~y~~~~------------~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPARP------------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSSCT------------TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred EEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhh
Confidence 99999999996431 125999999999999999999999999999999999999999999999999996
Q ss_pred CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+ .+.++.|+++||+||++.+++. |++||+.+..
T Consensus 410 ~-~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~ 442 (595)
T 2yl4_A 410 Q-LNPVWLRSKIGTVSQEPILFSC-SIAENIAYGA 442 (595)
T ss_dssp T-BCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTS
T ss_pred h-CCHHHHHhceEEEccCCcccCC-CHHHHHhhcC
Confidence 3 3456778899999999999975 9999998854
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=175.65 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=78.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++|+++.|++.. ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSD-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--- 66 (237)
T ss_dssp CEEEEEEEEESCTTS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---
T ss_pred eEEEEEEEEEeCCCC-------------CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---
Confidence 489999999996321 1599999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
.+||+||++.+ +.+|++||+.+..
T Consensus 67 -----------~i~~v~Q~~~~-~~~tv~enl~~~~ 90 (237)
T 2cbz_A 67 -----------SVAYVPQQAWI-QNDSLRENILFGC 90 (237)
T ss_dssp -----------CEEEECSSCCC-CSEEHHHHHHTTS
T ss_pred -----------EEEEEcCCCcC-CCcCHHHHhhCcc
Confidence 38999999875 5889999998753
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=3.3e-19 Score=196.68 Aligned_cols=100 Identities=26% Similarity=0.425 Sum_probs=90.1
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus 353 ~~i~~~~v~~~y~~~--------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK--------------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSSSS--------------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CeEEEEEEEEECCCC--------------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence 369999999999643 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.+ .+.++.|+++||+||++.+|+. |++||+.+.
T Consensus 419 i~~-~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~ 452 (598)
T 3qf4_B 419 IRK-IKRSSLRSSIGIVLQDTILFST-TVKENLKYG 452 (598)
T ss_dssp GGG-SCHHHHHHHEEEECTTCCCCSS-BHHHHHHSS
T ss_pred hhh-CCHHHHHhceEEEeCCCccccc-cHHHHHhcC
Confidence 963 4567788999999999999965 999999874
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=3.9e-19 Score=195.68 Aligned_cols=101 Identities=18% Similarity=0.327 Sum_probs=90.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++.. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus 340 ~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFENT-------------DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred CcEEEEEEEEEcCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence 4699999999996531 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+++ .+.++.|+++||+||++.+|+. |++||+.+.
T Consensus 407 i~~-~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~ 440 (587)
T 3qf4_A 407 VRT-VKLKDLRGHISAVPQETVLFSG-TIKENLKWG 440 (587)
T ss_dssp GGG-BCHHHHHHHEEEECSSCCCCSE-EHHHHHTTT
T ss_pred ccc-CCHHHHHhheEEECCCCcCcCc-cHHHHHhcc
Confidence 863 4566788999999999999976 999999764
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=3e-18 Score=204.06 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=98.7
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..|+++||+.+|+++. +.++|+|+||+|++||.+||+|+|||||||++++|.|+++|++|+|.|||.|
T Consensus 1075 g~I~f~nVsf~Y~~~~------------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERP------------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTSC------------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCCC------------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEE
Confidence 3699999999997542 2369999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
+++ -+.+.+|+++|++||++.||+. |+||||.+...-...+.+++.+.
T Consensus 1143 i~~-i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~A 1190 (1321)
T 4f4c_A 1143 IKT-LNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEA 1190 (1321)
T ss_dssp TTT-BCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHH
T ss_pred hhh-CCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHH
Confidence 974 5788999999999999999987 99999976422233455555443
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=1.9e-17 Score=196.82 Aligned_cols=103 Identities=22% Similarity=0.397 Sum_probs=92.3
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|+++. +.++|+|+||++++||++||+|||||||||++++|.|+++|++|+|.++|.|
T Consensus 386 g~i~~~~v~~~y~~~~------------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~ 453 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK------------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453 (1284)
T ss_dssp CCEEEEEEEECCSSTT------------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCCCC------------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 3599999999997531 2369999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
++. .+.+.+|+++|||||++.|++. |++||+.+..
T Consensus 454 i~~-~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~ 488 (1284)
T 3g5u_A 454 IRT-INVRYLREIIGVVSQEPVLFAT-TIAENIRYGR 488 (1284)
T ss_dssp GGG-SCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHC
T ss_pred HHh-CCHHHHHhheEEEcCCCccCCc-cHHHHHhcCC
Confidence 963 4567788999999999999987 9999998863
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.70 E-value=1.6e-17 Score=166.66 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=66.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.+ . .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~--~---------------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--T---------------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-- 99 (290)
T ss_dssp -----------C--C---------------CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--
T ss_pred ceEEEEEEEEcC--c---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--
Confidence 358999998853 1 499999999999999999999999999999999999999999999987
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLH 518 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~ 518 (536)
.+||+||++.+++. |++||+.
T Consensus 100 ------------~i~~v~Q~~~l~~~-tv~enl~ 120 (290)
T 2bbs_A 100 ------------RISFCSQNSWIMPG-TIKENII 120 (290)
T ss_dssp ------------CEEEECSSCCCCSS-BHHHHHH
T ss_pred ------------EEEEEeCCCccCcc-cHHHHhh
Confidence 38999999999885 9999997
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.69 E-value=3.8e-17 Score=194.62 Aligned_cols=114 Identities=23% Similarity=0.396 Sum_probs=97.9
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..|+++|+++.|++.. ++++|+|+||++++||.++|+||+||||||++++|.|+++|++|+|.++|.|
T Consensus 414 g~I~~~nvsF~Y~~~~------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRP------------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSST------------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CcEEEEEeeeeCCCCC------------CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCcc
Confidence 3699999999997642 2369999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~ 534 (536)
+++ -+.+.+|+++|||||++.||+. |++||+.+.. ...+.+++.+.
T Consensus 482 i~~-~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~--~~~~~~~v~~a 527 (1321)
T 4f4c_A 482 VRD-INLEFLRKNVAVVSQEPALFNC-TIEENISLGK--EGITREEMVAA 527 (1321)
T ss_dssp TTT-SCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTC--TTCCHHHHHHH
T ss_pred chh-ccHHHHhhcccccCCcceeeCC-chhHHHhhhc--ccchHHHHHHH
Confidence 974 5678899999999999999976 9999998752 12345555443
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.69 E-value=1.8e-17 Score=197.07 Aligned_cols=114 Identities=25% Similarity=0.408 Sum_probs=96.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|+++. +..+|+|+||+|++||++||+|+|||||||++++|.|+++|++|+|.++|.|
T Consensus 1029 g~i~~~~v~~~y~~~~------------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP------------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCGG------------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSC
T ss_pred CcEEEEEEEEECCCCC------------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 3599999999997531 1259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIK 532 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~ 532 (536)
++. .+.+..|+++||+||++.+++ .|++||+.+....++.+.+++.
T Consensus 1097 i~~-~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~ 1142 (1284)
T 3g5u_A 1097 IKQ-LNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIV 1142 (1284)
T ss_dssp TTS-SCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHH
T ss_pred ccc-CCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHH
Confidence 963 456788999999999999885 5999999875433334444443
No 48
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.58 E-value=7.7e-18 Score=153.99 Aligned_cols=78 Identities=24% Similarity=0.194 Sum_probs=67.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
.+++++||++++||+++|+||||||||||+++|+|++ |++|+|.++|.++.. . .+.+ ++++|+..++ .+|+.
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~-~~~~---~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--E-YNIA---GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--E-EEET---TEEEEEEECT-TCSCT
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--e-ccCC---Ccceeccccc-cCCcH
Confidence 6999999999999999999999999999999999999 999999999988731 1 1112 2799999898 99999
Q ss_pred HHHHHH
Q 009374 515 EHLHLF 520 (536)
Q Consensus 515 e~L~~~ 520 (536)
|++.++
T Consensus 93 e~l~~~ 98 (158)
T 1htw_A 93 EELEFM 98 (158)
T ss_dssp THHHHS
T ss_pred HHHHHc
Confidence 999764
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.50 E-value=2.8e-14 Score=156.96 Aligned_cols=87 Identities=25% Similarity=0.282 Sum_probs=77.3
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...+++++++|.|++ ..++++||++++||++||+||||||||||+++|+|+.+|++|+|.+
T Consensus 355 ~~~l~~~~l~~~~~~----------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--- 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS----------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--- 415 (607)
T ss_dssp CEEEEECCEEEECSS----------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---
T ss_pred ceEEEEeceEEEecc----------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---
Confidence 357999999999953 3689999999999999999999999999999999999999999875
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++.+||+||+..+.+++||+|++...
T Consensus 416 -----------~~~i~~v~Q~~~~~~~~tv~e~~~~~ 441 (607)
T 3bk7_A 416 -----------DLTVAYKPQYIKAEYEGTVYELLSKI 441 (607)
T ss_dssp -----------CCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred -----------eeEEEEEecCccCCCCCcHHHHHHhh
Confidence 13599999998888899999998764
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.49 E-value=3.9e-14 Score=153.98 Aligned_cols=87 Identities=25% Similarity=0.268 Sum_probs=77.1
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
+..++++++++.|++ ..++++||++++||++||+||||||||||+++|+|+.+|++|+|.+
T Consensus 285 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--- 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS----------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--- 345 (538)
T ss_dssp CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---
T ss_pred CeEEEEeeEEEEECC----------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---
Confidence 357999999999953 3689999999999999999999999999999999999999999874
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+..+||+||+..+.+.+||.|++...
T Consensus 346 -----------~~~i~~v~Q~~~~~~~~tv~~~~~~~ 371 (538)
T 1yqt_A 346 -----------DLTVAYKPQYIKADYEGTVYELLSKI 371 (538)
T ss_dssp -----------CCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred -----------CceEEEEecCCcCCCCCcHHHHHHhh
Confidence 13599999998888899999988764
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.46 E-value=9.7e-14 Score=150.62 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=77.7
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
...+++++++|.|++ ..+++.|+++++||++||+||||||||||+++|+|+.+|++|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD----------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK- 329 (538)
T ss_dssp CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-
T ss_pred cceEEEcceEEEECC----------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-
Confidence 457899999999964 367888999999999999999999999999999999999999998653
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+.++|+||+......+||+|++...
T Consensus 330 ------------~~i~~~~q~~~~~~~~tv~~~l~~~ 354 (538)
T 3ozx_A 330 ------------QILSYKPQRIFPNYDGTVQQYLENA 354 (538)
T ss_dssp ------------CCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred ------------eeeEeechhcccccCCCHHHHHHHh
Confidence 3589999998777789999999874
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.46 E-value=5.2e-14 Score=160.49 Aligned_cols=90 Identities=24% Similarity=0.310 Sum_probs=76.6
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++++|+++.|++.. +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~g~~-------------~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTS-------------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN- 735 (986)
T ss_dssp EEEEEEEEEECCTTCS-------------SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-
T ss_pred ceEEEEeeEEEeCCCC-------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-
Confidence 4699999999996521 15899999999999999999999999999999999999999999998751
Q ss_pred cCCcccHHHhhcceEEEcCCCCC----CCCCCHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFNIL----WDALSGEEHLHL 519 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~~l----~~~lTv~e~L~~ 519 (536)
.++||++|+... ..+.|++|++.+
T Consensus 736 -----------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~ 763 (986)
T 2iw3_A 736 -----------CRIAYIKQHAFAHIESHLDKTPSEYIQW 763 (986)
T ss_dssp -----------CCEEEECHHHHHHGGGCTTSCHHHHHHH
T ss_pred -----------cceEeeccchhhhhhcccccCHHHHHHH
Confidence 249999998531 235799999876
No 53
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.38 E-value=3.1e-14 Score=150.70 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=86.4
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE-
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF- 483 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~- 483 (536)
..++++++++.|+.. ..|++++ |++.+||+++|+||||||||||+++|+|+.+|++|.+.++|.
T Consensus 130 ~~l~~~~v~~~~~tg--------------~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r 194 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--------------VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGER 194 (438)
T ss_dssp CTTTSCCCCSBCCCS--------------CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CceEEeccceecCCC--------------ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEecee
Confidence 357889999999632 2599999 999999999999999999999999999999999999999998
Q ss_pred --ecCCc----ccHHHhhcceEEEcCC-CCCCCCCCHHHHHHHHHHhc
Q 009374 484 --SIRSS----VSMTNIQKSIGVCPQF-NILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 484 --~i~~~----~~~~~~~~~ig~~pQ~-~~l~~~lTv~e~L~~~~~lk 524 (536)
++... .+....++.++|++|+ +.+++.+|+.|++.+.+...
T Consensus 195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~ 242 (438)
T 2dpy_A 195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDF 242 (438)
T ss_dssp HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 44210 0123467889999995 66788999999998877643
No 54
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.37 E-value=1.1e-13 Score=139.73 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=71.3
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc---cHHHh--hcceEEEcCCCC-CCC
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQFNI-LWD 509 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~---~~~~~--~~~ig~~pQ~~~-l~~ 509 (536)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... +...+ ++.+++++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 457789999999999999999999999999999999999999999999874221 11222 457999999998 999
Q ss_pred CCCHHHHHHHHH
Q 009374 510 ALSGEEHLHLFA 521 (536)
Q Consensus 510 ~lTv~e~L~~~~ 521 (536)
.+|++|++.+..
T Consensus 169 ~~~v~e~l~~~~ 180 (302)
T 3b9q_A 169 ATVLSKAVKRGK 180 (302)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 55
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.36 E-value=1.6e-15 Score=146.05 Aligned_cols=74 Identities=12% Similarity=0.028 Sum_probs=50.1
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALS 512 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lT 512 (536)
..|+|+||++++|++++|+||||||||||+++|+|++ | |++.+ |.++.........++.++|+||+..+|+.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 4799999999999999999999999999999999998 5 99999 8776321111224567999999987766543
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.34 E-value=1.9e-13 Score=150.28 Aligned_cols=98 Identities=22% Similarity=0.228 Sum_probs=72.3
Q ss_pred eEEE--------eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374 406 AVQI--------RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (536)
Q Consensus 406 ~i~~--------~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~ 477 (536)
++++ +|++|+|++. ..+++|+| ++++||++||+||||||||||+++|+|+++|++|+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--------------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred eEEEecCCccccCCeEEEECCC--------------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 5788 8889999542 13899999 99999999999999999999999999999999999
Q ss_pred E---------EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCC---CCHHHHHH
Q 009374 478 A---------LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDA---LSGEEHLH 518 (536)
Q Consensus 478 i---------~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~---lTv~e~L~ 518 (536)
+ .++|.++... ......+..+++.+|+....+. .|++|++.
T Consensus 148 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 201 (607)
T 3bk7_A 148 DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201 (607)
T ss_dssp TCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHH
T ss_pred cccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhh
Confidence 5 3455544110 0001123468999997443222 38999885
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.31 E-value=3.2e-13 Score=146.75 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=69.6
Q ss_pred EEE-eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE-------
Q 009374 407 VQI-RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA------- 478 (536)
Q Consensus 407 i~~-~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i------- 478 (536)
.++ +||+|.|++. ..+++++| ++++||++||+||||||||||+++|+|+++|++|++
T Consensus 21 ~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~ 85 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--------------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV 85 (538)
T ss_dssp ---CCCEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHH
T ss_pred hhHhcCcEEEECCc--------------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 344 5899999642 14899999 999999999999999999999999999999999995
Q ss_pred --EEcCEecCCcc-cHHHhhcceEEEcCCCCCCCC---CCHHHHHH
Q 009374 479 --LIYGFSIRSSV-SMTNIQKSIGVCPQFNILWDA---LSGEEHLH 518 (536)
Q Consensus 479 --~i~g~~i~~~~-~~~~~~~~ig~~pQ~~~l~~~---lTv~e~L~ 518 (536)
.++|.++.... .....+..+++++|+..+.+. .|++|++.
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~ 131 (538)
T 1yqt_A 86 IRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK 131 (538)
T ss_dssp HHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHH
T ss_pred HHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHh
Confidence 34554431000 001123468999997554432 38888875
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.30 E-value=3.9e-14 Score=135.23 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=49.7
Q ss_pred cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
+.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++. ......++.+||+||+.
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~--~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT--RPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE--ECSCCTTCCCCSSCC--
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec--CCchhhhcceEEecCCH
Confidence 3689996 89999999999999999999999999 99999994 33331 11123567899999975
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.29 E-value=3.5e-12 Score=145.51 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=69.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..+...|++|.|++. .+++|+||++++||++||+||||||||||+++|+| |++ +|.+
T Consensus 434 ~~L~~~~ls~~yg~~---------------~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~ 490 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAK---------------ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFP 490 (986)
T ss_dssp CEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCC
T ss_pred ceeEEeeEEEEECCE---------------EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCc
Confidence 457777999999642 59999999999999999999999999999999995 543 4544
Q ss_pred cCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHH
Q 009374 485 IRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHL 519 (536)
Q Consensus 485 i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~ 519 (536)
.. . +.+++|++|+. .+++++|+.|++.+
T Consensus 491 ~~--~-----~~~~~~v~q~~~~~~~~ltv~e~l~~ 519 (986)
T 2iw3_A 491 TQ--E-----ECRTVYVEHDIDGTHSDTSVLDFVFE 519 (986)
T ss_dssp CT--T-----TSCEEETTCCCCCCCTTSBHHHHHHT
T ss_pred cc--c-----ceeEEEEcccccccccCCcHHHHHHH
Confidence 31 1 12479999974 78899999999975
No 60
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.29 E-value=6.6e-13 Score=136.68 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=71.6
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc---cHHHh--hcceEEEcCCCC-CCCCC
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQFNI-LWDAL 511 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~---~~~~~--~~~ig~~pQ~~~-l~~~l 511 (536)
+.+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... +...+ |+.+++++|+.. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 5688999999999999999999999999999999999999999999874211 11222 457999999988 89999
Q ss_pred CHHHHHHHHH
Q 009374 512 SGEEHLHLFA 521 (536)
Q Consensus 512 Tv~e~L~~~~ 521 (536)
|++|++.+..
T Consensus 228 tv~e~l~~~~ 237 (359)
T 2og2_A 228 VLSKAVKRGK 237 (359)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999998754
No 61
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.27 E-value=9e-14 Score=140.81 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=84.3
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEE-------------------ecCcEEEEeCCCCCchhHHHHh
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI-------------------AKDQLFCLLGPNGAGKTTTISC 466 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v-------------------~~gei~~LlG~NGaGKSTll~~ 466 (536)
.+++++|+|.|+ ++++++++.+ .+|+++||+|+|||||||++++
T Consensus 37 ~i~~~~v~~~y~-----------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp TCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHH
T ss_pred ccchHhHHHHHH-----------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHH
Confidence 588999999993 4889999988 9999999999999999999999
Q ss_pred HcCccc--cCccEEEE---cCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374 467 LTGITP--VTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525 (536)
Q Consensus 467 l~g~~~--pt~G~i~i---~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg 525 (536)
|+|++. |++|+|.+ +|.... ...++.+|++ |...+++.+|+.+++.+..++++
T Consensus 100 L~~~l~~~~~~G~i~vi~~d~~~~~-----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 100 LQALLSRWPEHRRVELITTDGFLHP-----NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp HHHHHTTSTTCCCEEEEEGGGGBCC-----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCCCCeEEEEecCCccCc-----HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhC
Confidence 999998 99999999 887642 1235568899 88888899999999999888764
No 62
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.25 E-value=4e-14 Score=134.85 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=51.1
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
..++| .++++||+++|+||||||||||+++|+|+++. +.+++.... .......++.+||+||+..+++.+|+.
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~-~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATT-RAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEES-SCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccc-cCCcccccCCCeeEecCHHHHHHHHhc
Confidence 57888 79999999999999999999999999999863 344432211 111112356799999998888888888
Q ss_pred HHHH
Q 009374 515 EHLH 518 (536)
Q Consensus 515 e~L~ 518 (536)
|++.
T Consensus 83 ~~l~ 86 (207)
T 1znw_A 83 GELL 86 (207)
T ss_dssp TCEE
T ss_pred CCce
Confidence 7764
No 63
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.24 E-value=1.4e-12 Score=138.32 Aligned_cols=86 Identities=20% Similarity=0.097 Sum_probs=72.9
Q ss_pred eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc---cHHH--hhcceEEEcCCCCCCCCC
Q 009374 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTN--IQKSIGVCPQFNILWDAL 511 (536)
Q Consensus 437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~---~~~~--~~~~ig~~pQ~~~l~~~l 511 (536)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+.... +... .|+.++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46889999999999999999999999999999999999999999987763211 1122 366799999999988999
Q ss_pred CHHHHHHHHHH
Q 009374 512 SGEEHLHLFAN 522 (536)
Q Consensus 512 Tv~e~L~~~~~ 522 (536)
|+++++.+...
T Consensus 363 tV~e~l~~a~~ 373 (503)
T 2yhs_A 363 VIFDAIQAAKA 373 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 64
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.23 E-value=1.9e-12 Score=126.56 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=53.1
Q ss_pred cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCH
Q 009374 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSG 513 (536)
Q Consensus 434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv 513 (536)
+.+|+|+||++++|+++||+|||||||||++++|+|++ |.+.++ ..++.+++++|++ +++.+|+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------GGGCSEEEEEGGG-GBCCCCH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------ccCCceEEEeCCc-CccccCH
Confidence 46999999999999999999999999999999999976 443332 3467899999995 7788999
Q ss_pred HHHHHHHHHhcC
Q 009374 514 EEHLHLFANIKG 525 (536)
Q Consensus 514 ~e~L~~~~~lkg 525 (536)
.|++.+.....+
T Consensus 76 ~~~~~~~~~~~~ 87 (245)
T 2jeo_A 76 EQKAKALKGQYN 87 (245)
T ss_dssp HHHHHHHTTCCC
T ss_pred hHhhhhhccCCC
Confidence 999887654433
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.22 E-value=2.4e-12 Score=143.80 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=43.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHH---------------------HhHcCccccC-------ccEEEEcCEecC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI---------------------SCLTGITPVT-------GGDALIYGFSIR 486 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll---------------------~~l~g~~~pt-------~G~i~i~g~~i~ 486 (536)
++|+|+||+|++||++||+||||||||||+ +++.|+..|+ .|.+.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 599999999999999999999999999998 8999999998 455556665432
Q ss_pred CcccHHHhhcceEEEcCCCC-------------------CCCCCCHHHHHHHHHH
Q 009374 487 SSVSMTNIQKSIGVCPQFNI-------------------LWDALSGEEHLHLFAN 522 (536)
Q Consensus 487 ~~~~~~~~~~~ig~~pQ~~~-------------------l~~~lTv~e~L~~~~~ 522 (536)
...++.+|+++|... .++.+|++|++.++..
T Consensus 112 -----~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~ 161 (670)
T 3ux8_A 112 -----RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDG 161 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC---------
T ss_pred -----ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhc
Confidence 112344555555432 3467899999988643
No 66
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.20 E-value=4.3e-13 Score=133.23 Aligned_cols=72 Identities=18% Similarity=0.069 Sum_probs=45.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk 524 (536)
.++|+||||||||||+|+|+|+..|++|++.++|.++.. ...++.+|++||++.+++.+||.|++.+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK----TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC----CCSCCEEEESCC----CCEEEEECCCC--CCSB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc----ceeeeeeEEEeecCCCcCCceEEechhhhhhcc
Confidence 479999999999999999999999999999999988742 123577999999999999999999998865444
No 67
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.19 E-value=2.7e-13 Score=137.45 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=70.9
Q ss_pred CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEE-----------------------EecCcEEEEeCCCCCch
Q 009374 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVN-----------------------IAKDQLFCLLGPNGAGK 460 (536)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~-----------------------v~~gei~~LlG~NGaGK 460 (536)
+..|++++|+|.|. ++++++++. +++|+++||+|||||||
T Consensus 41 ~~~i~~~~v~~~y~-----------------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGK 103 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----------------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGK 103 (312)
T ss_dssp TCCCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCH
T ss_pred CCeEEeeehhhhhh-----------------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchH
Confidence 34688999999994 345555543 89999999999999999
Q ss_pred hHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374 461 TTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL 528 (536)
Q Consensus 461 STll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~ 528 (536)
|||+++|+|+++|+.|. +.+|+++|++.+++. |++|++.++. .+|.+.
T Consensus 104 STL~~~L~gll~~~~G~------------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~ 151 (312)
T 3aez_A 104 STTARVLQALLARWDHH------------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPE 151 (312)
T ss_dssp HHHHHHHHHHHHTSTTC------------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGG
T ss_pred HHHHHHHHhhccccCCC------------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCCh
Confidence 99999999999997653 358999999999998 9999986642 245543
No 68
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.19 E-value=8.8e-14 Score=133.89 Aligned_cols=88 Identities=22% Similarity=0.245 Sum_probs=68.9
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCcccc--CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCH----HH
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSG----EE 515 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv----~e 515 (536)
-.+++|++++|+||||||||||+++|+|+.+| ..|.|.+.+++.+. ..++.++|+||...+|+.+|+ .|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 46899999999999999999999999999986 78999888866531 235679999999999999888 78
Q ss_pred HHHHHHHhcCCChHhHhhh
Q 009374 516 HLHLFANIKGLPLDSIKSV 534 (536)
Q Consensus 516 ~L~~~~~lkg~~~~~~~~~ 534 (536)
|+.+++...|.+.+.+++.
T Consensus 86 ~~~~~~~~yg~~~~~v~~~ 104 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIEQV 104 (219)
T ss_dssp EEEETTEEEEEEHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHH
Confidence 8877666667666655544
No 69
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.18 E-value=4.3e-12 Score=131.29 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=64.8
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEc-CCCCC--CCCCC
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCP-QFNIL--WDALS 512 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~p-Q~~~l--~~~lT 512 (536)
+++++++.+++|++++|+||||||||||+++|+|+++|++|.|+++|..- ......++.+++++ |++.+ ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e---~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE---LFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC---CCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc---cCccccCCEEEEeecCccccccccccC
Confidence 34999999999999999999999999999999999999999999998421 11223467799999 87765 57889
Q ss_pred HHHHHHHHHH
Q 009374 513 GEEHLHLFAN 522 (536)
Q Consensus 513 v~e~L~~~~~ 522 (536)
++++|....+
T Consensus 241 ~~~~i~~~l~ 250 (361)
T 2gza_A 241 AATLLRSCLR 250 (361)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999987644
No 70
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.16 E-value=2.3e-11 Score=133.59 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=60.7
Q ss_pred ceeeceeEEEecC-----cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCC
Q 009374 435 HAIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD 509 (536)
Q Consensus 435 ~al~~lsl~v~~g-----ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~ 509 (536)
.+++++||++++| |++||+||||||||||+++|+|+.+|++|+. +. +..++|+||+.....
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~--------~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP--------KLNVSMKPQKIAPKF 426 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC--------SCCEEEECSSCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc--------CCcEEEecccccccC
Confidence 4899999999999 8899999999999999999999999999962 21 246999999977777
Q ss_pred CCCHHHHHH
Q 009374 510 ALSGEEHLH 518 (536)
Q Consensus 510 ~lTv~e~L~ 518 (536)
..|++|++.
T Consensus 427 ~~tv~e~~~ 435 (608)
T 3j16_B 427 PGTVRQLFF 435 (608)
T ss_dssp CSBHHHHHH
T ss_pred CccHHHHHH
Confidence 789999864
No 71
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.15 E-value=8.3e-12 Score=128.21 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=69.2
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..++.++++|.|+.. +.|+|++ |.|.+||++||+|+||||||||+++|+|+.+|+.|.+.+.|++
T Consensus 44 ~~i~~~~l~~~~~tg--------------~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--------------VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECCS--------------CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CCeeecccceecCCC--------------CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 357889999999632 2599999 9999999999999999999999999999999999999999865
Q ss_pred cCCc------ccHHHhhcceEEEcCCC
Q 009374 485 IRSS------VSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 485 i~~~------~~~~~~~~~ig~~pQ~~ 505 (536)
.+.. ......++.+++++|.+
T Consensus 109 ~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 109 GREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp HHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred HHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 2100 01123456789999875
No 72
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.5e-12 Score=138.58 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=71.0
Q ss_pred ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-E-EEEcC
Q 009374 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-D-ALIYG 482 (536)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~-i~i~g 482 (536)
.+++++||+|.| +++||++++||+++|+||||||||||+|+|+|+.+|++| + |+++|
T Consensus 117 ~mi~~~nl~~~y---------------------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 117 TMKYIYNLHFML---------------------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp THHHHHHHHHHH---------------------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred chhhhhhhhehh---------------------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 356777777766 268899999999999999999999999999999999999 9 99998
Q ss_pred EecCCcccHHHhhcceEEEcCCCC---CCCCCCHHHHHHHH
Q 009374 483 FSIRSSVSMTNIQKSIGVCPQFNI---LWDALSGEEHLHLF 520 (536)
Q Consensus 483 ~~i~~~~~~~~~~~~ig~~pQ~~~---l~~~lTv~e~L~~~ 520 (536)
+ .++.+|++||+.. +.+.+|++|++ +.
T Consensus 176 -~---------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 176 -D---------PQQPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp -C---------TTSCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred -C---------ccCCeeeeccchhhcccccccchhhhh-cc
Confidence 2 2567999999984 45568999988 53
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.14 E-value=1.1e-12 Score=137.52 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=62.4
Q ss_pred ceeeceeEEEecCc--------------------EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHh
Q 009374 435 HAIKGLWVNIAKDQ--------------------LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494 (536)
Q Consensus 435 ~al~~lsl~v~~ge--------------------i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~ 494 (536)
.+++++|+++++|| ++||+|+||||||||+|+|+|+.+|++|+|.++|.++.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------- 108 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------- 108 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------------
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--------
Confidence 69999999999999 99999999999999999999999999999999987651
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 495 QKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 495 ~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
+ .|+++|++ .++.+|++|++.+
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~ 130 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGI 130 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCG
T ss_pred e--eEEecccc-ccCCeeehHhhcc
Confidence 1 27899985 5778888777543
No 74
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.14 E-value=1.3e-11 Score=124.48 Aligned_cols=75 Identities=21% Similarity=0.176 Sum_probs=64.1
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc---cHHHh--hcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~---~~~~~--~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... +...+ ++.+++++|+..+.+.+|++|++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999874322 12222 45799999999999999999999764
No 75
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.13 E-value=7.6e-13 Score=145.95 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=62.9
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeece----------eEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-C
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGL----------WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-T 474 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~l----------sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-t 474 (536)
.+.+++|++.|++.. ...++.+ +++++. +||+|+||||||||+++|+|+..| +
T Consensus 10 ~i~~~~l~~~~~~~~-------------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~ 73 (608)
T 3szr_A 10 SVAENNLCSQYEEKV-------------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG 73 (608)
T ss_dssp ----------CHHHH-------------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----
T ss_pred hhhhhhhhHHHHHHH-------------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC
Confidence 477889999996421 0233333 356654 999999999999999999999988 7
Q ss_pred ccEEEEcCEecCC--cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 475 GGDALIYGFSIRS--SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 475 ~G~i~i~g~~i~~--~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
+|.|+++|.++.. ..+...+++.+||+||+..+++.+||+|++......
T Consensus 74 sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 74 SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp ---CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 9999999998621 112345678899999999999999999999887544
No 76
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.12 E-value=4.8e-13 Score=137.10 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=75.0
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++++++++.|++. .+++++++++.+|++++|+|+||||||||+++|+|++.|++|+|.+.|.++
T Consensus 29 ~ie~~~~~~~~~~~---------------~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAVR---------------DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHHH---------------HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred HHeeCCcccccChH---------------HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 36677888888532 589999999999999999999999999999999999999999999999887
Q ss_pred CCcc---cHHHhhcceEEEcCCCCCCCC
Q 009374 486 RSSV---SMTNIQKSIGVCPQFNILWDA 510 (536)
Q Consensus 486 ~~~~---~~~~~~~~ig~~pQ~~~l~~~ 510 (536)
.... .....++++|+++|+..++..
T Consensus 94 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 94 SSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp GGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred cccccccchHHHhhhheeeccCcccccc
Confidence 3211 112356789999999988864
No 77
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.11 E-value=4.4e-12 Score=137.70 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=61.0
Q ss_pred ceeeceeE-EEecCcEEEEeCCCCCchhHHHHh--HcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374 435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC--LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 435 ~al~~lsl-~v~~gei~~LlG~NGaGKSTll~~--l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~ 506 (536)
.+|+++++ ++++||+++|+||||||||||+++ ++|+.+|++|.++++|.+. ..+..+.++.+|+++|+..
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~--~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET--PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--HHHHHHHHGGGTCCHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCCChHHhh
Confidence 69999999 999999999999999999999999 7899999999999999874 2334455677999999743
No 78
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.09 E-value=7.1e-13 Score=133.38 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=59.0
Q ss_pred EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++||++.|+ . .+|+++||+|++||+++|+||||||||||+++|+|++ +|+|...+....
T Consensus 102 i~~~~vs~~y~-~---------------~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~ 162 (305)
T 2v9p_A 102 FNYQNIELITF-I---------------NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKS 162 (305)
T ss_dssp HHHTTCCHHHH-H---------------HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTS
T ss_pred EEEEEEEEEcC-h---------------hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcc
Confidence 67788999985 1 5999999999999999999999999999999999999 899976543211
Q ss_pred CcccHHHhhc-ceEEEcC
Q 009374 487 SSVSMTNIQK-SIGVCPQ 503 (536)
Q Consensus 487 ~~~~~~~~~~-~ig~~pQ 503 (536)
... ...++. ++++.++
T Consensus 163 ~lf-~~ti~~~ni~~~~~ 179 (305)
T 2v9p_A 163 HFW-LASLADTRAALVDD 179 (305)
T ss_dssp GGG-GGGGTTCSCEEEEE
T ss_pred ccc-cccHHHHhhccCcc
Confidence 001 123443 6777653
No 79
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.08 E-value=8.9e-12 Score=125.70 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=53.3
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHhhcceEEEcCCCC------------
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQFNI------------ 506 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~~~~ig~~pQ~~~------------ 506 (536)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++........ .+.+|+++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~-~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK-FDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE-CTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE-cCCCCEEEECcCCCccCCCcCCHH
Confidence 346689999999999999999999999999999999999 8988753221111 236899999975
Q ss_pred ----CCCCCCHHHHHHHH
Q 009374 507 ----LWDALSGEEHLHLF 520 (536)
Q Consensus 507 ----l~~~lTv~e~L~~~ 520 (536)
+++++|+ ||+.+.
T Consensus 243 ~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHhccc-ccCcCC
Confidence 6899999 888764
No 80
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.07 E-value=5.1e-11 Score=121.33 Aligned_cols=79 Identities=20% Similarity=0.132 Sum_probs=65.7
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccH---HHhhc--ceEEEcCCCCCCCCCCHHHHH
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM---TNIQK--SIGVCPQFNILWDALSGEEHL 517 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~---~~~~~--~ig~~pQ~~~l~~~lTv~e~L 517 (536)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+...... ..+++ .+.+++|...+.+.+|++|++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998532222 22333 355999999999999999999
Q ss_pred HHHH
Q 009374 518 HLFA 521 (536)
Q Consensus 518 ~~~~ 521 (536)
.+..
T Consensus 205 ~~~~ 208 (328)
T 3e70_C 205 QHAK 208 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 81
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=3.3e-12 Score=133.77 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=59.6
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcE--EEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei--~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+++++ +|.|++. + ++++||++++|++ ++|+|+||||||||+++|+|+. ++|.
T Consensus 16 ~l~~~~-~~~y~~~---------------~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~ 70 (427)
T 2qag_B 16 TVPLAG-HVGFDSL---------------P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGE 70 (427)
T ss_dssp -CCCCC-CC-CC-----------------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C---
T ss_pred eEEEee-EEEECCe---------------e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCC
Confidence 455666 7788532 4 9999999999999 9999999999999999999984 3344
Q ss_pred ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
++... .....++.+|+++|++.+++.+|+.|++.+
T Consensus 71 ~~~~~-~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 71 PATHT-QPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp ----C-CSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred cCCCC-CccceEeeEEEEeecCccccccchhhhhhh
Confidence 43210 111234579999999988888888777654
No 82
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.02 E-value=4.1e-11 Score=127.48 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=49.1
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
.+++++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 589999999999 999999999999999999999999999999999998874
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.00 E-value=6.2e-11 Score=120.98 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=62.3
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
+++++++.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+.. .....++.+++++| ...+.++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---~~~~~~~~i~~~~g-----gg~~~r~ 231 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---VFKHHKNYTQLFFG-----GNITSAD 231 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---CCSSCSSEEEEECB-----TTBCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---ccccchhEEEEEeC-----CChhHHH
Confidence 789999999999999999999999999999999999999999999996531 11224567888876 4556666
Q ss_pred HHHH
Q 009374 516 HLHL 519 (536)
Q Consensus 516 ~L~~ 519 (536)
.|..
T Consensus 232 ~la~ 235 (330)
T 2pt7_A 232 CLKS 235 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 84
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.99 E-value=5.2e-11 Score=120.10 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=52.9
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHhh-cceEEEcCCCCCC-----CCCCH
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQ-KSIGVCPQFNILW-----DALSG 513 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~~-~~ig~~pQ~~~l~-----~~lTv 513 (536)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.... ...+ +.+|+++|.+.+. +++|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 45679999999999999999999999 99999999999 998874321 2222 3689999998654 78999
Q ss_pred HHHH
Q 009374 514 EEHL 517 (536)
Q Consensus 514 ~e~L 517 (536)
|++
T Consensus 238 -e~l 240 (302)
T 2yv5_A 238 -REV 240 (302)
T ss_dssp -GGG
T ss_pred -HHH
Confidence 877
No 85
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.99 E-value=1.9e-10 Score=120.83 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=68.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--------------------------------------cCcc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--------------------------------------VTGG 476 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--------------------------------------pt~G 476 (536)
.++++++|++.+| +++|+|+|||||||++++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4899999999999 999999999999999999966653 4578
Q ss_pred EEEEcCEecCCcccHHHhhcc-eEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 477 DALIYGFSIRSSVSMTNIQKS-IGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 477 ~i~i~g~~i~~~~~~~~~~~~-ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
+++++|.++. ..+..++.+. +++++|++.++.. +..+++.+...
T Consensus 128 ~i~ing~~~~-~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~ 172 (415)
T 4aby_A 128 AARLSGEVVS-VRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDR 172 (415)
T ss_dssp EEEETTEEEC-HHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHT
T ss_pred EEEECCEECC-HHHHHHHHhhceEEecCccccccc-CHHHHHHHHHH
Confidence 9999999985 2334555444 8999999877654 67777766544
No 86
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.98 E-value=1.7e-11 Score=115.68 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=54.1
Q ss_pred eEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLH 518 (536)
Q Consensus 441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~ 518 (536)
|+++.+|++++|+|||||||||++++|+|+.+ .+.+.|.++... .....+..+||++|+..+++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRP-KRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCC-CchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999964 577887766422 11233567999999988888877765543
No 87
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=9.7e-11 Score=117.96 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=46.0
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHhhcceEEEcCCCCCCC----CCCHH
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQFNILWD----ALSGE 514 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~----~lTv~ 514 (536)
+++.+|++++|+|+||||||||+|+|+|+.+|+.|+|.+ +|++++... ...+..+|+++|.+.+.. ++|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCccccccccCCH-
Confidence 556789999999999999999999999999999999999 888764321 122223799999988776 7899
Q ss_pred HHHH
Q 009374 515 EHLH 518 (536)
Q Consensus 515 e~L~ 518 (536)
|+|.
T Consensus 245 e~l~ 248 (307)
T 1t9h_A 245 EELG 248 (307)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 8883
No 88
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.93 E-value=4.2e-11 Score=110.41 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=54.8
Q ss_pred ceeEEEecCcEEEEeCCCCCchhHHHH------------hHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374 439 GLWVNIAKDQLFCLLGPNGAGKTTTIS------------CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 439 ~lsl~v~~gei~~LlG~NGaGKSTll~------------~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~ 506 (536)
|+||++++||+++|+||||||||||++ .+.|+..++.|++.+.|............+...|+..+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 80 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA 80 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 689999999999999999999999999 77788777777766555322100111122234566666666
Q ss_pred CCCCCCHHHHHHHHH
Q 009374 507 LWDALSGEEHLHLFA 521 (536)
Q Consensus 507 l~~~lTv~e~L~~~~ 521 (536)
.+...+.+......+
T Consensus 81 ~~~~s~g~~qrv~iA 95 (171)
T 4gp7_A 81 TNVQESARKPLIEMA 95 (171)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 666555555443333
No 89
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.92 E-value=2.1e-10 Score=117.76 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=60.7
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-cCccEEEEc-CEecCCcccHHHhhcceEEEcCCCCCCCCCCH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIY-GFSIRSSVSMTNIQKSIGVCPQFNILWDALSG 513 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-pt~G~i~i~-g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv 513 (536)
-++++++. .+|++++|+||||||||||+|+|+|+.+ |+.|+|.++ |.+.. ...++.++++||...+++..|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC------------------CCCEEEECTTSCEEEECHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-----ceEEEEEEEECCCCEecCcccH
Confidence 46667664 4899999999999999999999999999 999999987 76541 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCChHhHh
Q 009374 514 EEHLHLFANIKGLPLDSIK 532 (536)
Q Consensus 514 ~e~L~~~~~lkg~~~~~~~ 532 (536)
+|+ .+.+++.+++.
T Consensus 279 ~e~-----~l~~l~~~e~~ 292 (358)
T 2rcn_A 279 REF-----GLWHLEPEQIT 292 (358)
T ss_dssp HTC-----CCCCCCHHHHH
T ss_pred HHh-----hhcCCCHHHHH
Confidence 884 23455554443
No 90
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.91 E-value=7.8e-11 Score=109.90 Aligned_cols=73 Identities=14% Similarity=0.017 Sum_probs=56.0
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
.+++|++++|+|+|||||||++++|+|. |+.|.|.++|.++... ...++.++|.+|... +.+|+.|++...+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~---~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGY---IKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHT---CCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhh---hhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 4789999999999999999999999998 7889999998765210 011344678888654 46789999877653
No 91
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.91 E-value=8.6e-11 Score=118.45 Aligned_cols=85 Identities=15% Similarity=0.004 Sum_probs=37.0
Q ss_pred eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc-cccCccEEEEcCEecCCc
Q 009374 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTGGDALIYGFSIRSS 488 (536)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~-~~pt~G~i~i~g~~i~~~ 488 (536)
.||+|.|++. .++++++|+| +|+|+||||||||+++|.|. ..|++| +.++|.++..
T Consensus 2 ~~l~~~~~~~---------------~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~- 58 (301)
T 2qnr_A 2 SNLPNQVHRK---------------SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER- 58 (301)
T ss_dssp -------------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------
T ss_pred CCCcceECCE---------------EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-
Confidence 4678888542 5999999998 99999999999999999998 889999 8888877632
Q ss_pred ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 489 ~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
.. . .+.+++++|.+.+...||++|+..+.
T Consensus 59 -t~-~-~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 59 -TV-Q-IEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp ---------CEEEEC---CCEEEEEEEEC---
T ss_pred -cc-e-EeeEEEEecCCCcccCcchhhhhhhh
Confidence 11 1 35689999998888888887776653
No 92
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.91 E-value=4.1e-10 Score=123.67 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=39.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i 478 (536)
..+++++ .+++||++||+||||||||||+++|+|+++|++|++
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 3677777 689999999999999999999999999999999997
No 93
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.86 E-value=9.4e-11 Score=113.09 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=43.9
Q ss_pred eEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc-------cHHHhhcceEEEcCC
Q 009374 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV-------SMTNIQKSIGVCPQF 504 (536)
Q Consensus 441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~-------~~~~~~~~ig~~pQ~ 504 (536)
++++.+ ++++|+|||||||||++++|+|++.|++|+|.++|.++.... .....++.+|+++|.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 466666 999999999999999999999999999999999998873111 112246789999984
No 94
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.86 E-value=2.6e-10 Score=107.01 Aligned_cols=54 Identities=26% Similarity=0.328 Sum_probs=47.6
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
||+++|+||||||||||+++|+|+++ ++| +.++|+++. +.+..++.+|+++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~---~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE---EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC---EEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc---hhHhhhceEEEEEEec
Confidence 78999999999999999999999999 999 999998873 3345678899999973
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.84 E-value=1.7e-10 Score=112.08 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=54.1
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHc--CccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLT--GITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH 516 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~--g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~ 516 (536)
.+++||+++|+||||||||||+++|+ |+.++.+|.+++.+.+. ..+..+..+.+|+.+|+....+.+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 99 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER--ARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--HHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC--HHHHHHHHHHcCCChHHHhhcCCEEEEEc
Confidence 79999999999999999999999999 77577888888887654 22333445678998887554444444443
No 96
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.83 E-value=1.7e-11 Score=118.44 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=23.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc-Ccccc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT-GITPV 473 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~-g~~~p 473 (536)
+-.+++||++++|++++|+|||||||||++++|+ |+.++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99843
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.83 E-value=4.6e-10 Score=110.76 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=52.2
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCEecCCcccHHHhhcceEEEcC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ 503 (536)
.+++++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... .+..+++++|
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-----~~~~~~~v~q 77 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-----FKHKKSIVNQ 77 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-----CCCSSSEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-----cCCcceeeeH
Confidence 3899999 9999999999999999999999999999998 99999999876321 1233566777
No 98
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.83 E-value=2e-10 Score=120.59 Aligned_cols=91 Identities=18% Similarity=0.032 Sum_probs=56.2
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+.+++|++.|++. .+++|++|+| +|+|+||||||||+++|+|...++.|. +|.++
T Consensus 11 ~l~~~~l~~~y~~~---------------~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~ 66 (418)
T 2qag_C 11 YVGFANLPNQVYRK---------------SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSH 66 (418)
T ss_dssp ----CCCCCCTTTT---------------TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-
T ss_pred cEEEEecceeECCE---------------EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCccc
Confidence 58899999999643 5999999998 999999999999999999998866552 33222
Q ss_pred CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
... ....++.+|+++|.+.++..+|++|++.+...
T Consensus 67 ~~~--~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 67 RIK--KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp ------CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCc--cceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 100 01113568999999988888999888776543
No 99
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.81 E-value=1.7e-09 Score=117.26 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=33.5
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i 478 (536)
+++||++||+||||||||||+++|+|+++|++|++
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 45999999999999999999999999999999998
No 100
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.79 E-value=2.5e-09 Score=119.35 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=43.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhH----------------------cCccccCccEEEEcCEecC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL----------------------TGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l----------------------~g~~~pt~G~i~i~g~~i~ 486 (536)
.+|+|+||+|++||+++|+||||||||||+++| .|+..+ +|.+.++|.++.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~ 408 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIG 408 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSC
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCC
Confidence 589999999999999999999999999999875 355554 468888887763
No 101
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.73 E-value=2.6e-10 Score=119.81 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=63.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc-cc--HHHhhcceEEEc---------
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-VS--MTNIQKSIGVCP--------- 502 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~-~~--~~~~~~~ig~~p--------- 502 (536)
.+++++ + .++|++++|+||||||||||+++|.|+++|++|+|.+.|.++... .. ..++++.+|+.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGG
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhc
Confidence 477887 5 389999999999999999999999999999999999998776311 00 112344566655
Q ss_pred CCCCC--CCC----CCHHHHHHHHH
Q 009374 503 QFNIL--WDA----LSGEEHLHLFA 521 (536)
Q Consensus 503 Q~~~l--~~~----lTv~e~L~~~~ 521 (536)
|++.+ +++ .|+++++....
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~ 259 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASL 259 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHH
Confidence 87655 344 68888887653
No 102
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.71 E-value=5.2e-09 Score=112.70 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=65.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe-cCCcccHHHhhcceEEEcCCC--------
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS-IRSSVSMTNIQKSIGVCPQFN-------- 505 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~-i~~~~~~~~~~~~ig~~pQ~~-------- 505 (536)
.+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.+ +.. .. +..+++..|..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~-~~----~~~v~~~~r~~~~~~~~~~ 322 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKL-YH----ENWIAEVTRTGMGEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCC-CC----SSEEEEECBCCSSSCCBCH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccC-CC----CCeEEEEeecccccCCcCH
Confidence 58999999999999999999999999999999999999999999999865 211 00 12234443321
Q ss_pred --------------CCCCCCCHHHHHHHHHHhc
Q 009374 506 --------------ILWDALSGEEHLHLFANIK 524 (536)
Q Consensus 506 --------------~l~~~lTv~e~L~~~~~lk 524 (536)
.++++++..|.+.++.+..
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~ 355 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMS 355 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHH
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhc
Confidence 3446788888888776654
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.70 E-value=2.1e-09 Score=102.93 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=48.0
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCcccc-------CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPV-------TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-------t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
.+++||+++|+||||||||||+++|+|...+ ..|.+++++.+... ++.+++++|...+.++ |+.|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-------~~~i~~~~~~~~~~~~-~~~~ 92 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-------PERIREIAQNRGLDPD-EVLK 92 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-------HHHHHHHHHHTTSCHH-HHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-------HHHHHHHHHHcCCCHH-HHhh
Confidence 7999999999999999999999999996554 44488888765311 1224445555555444 5666
Q ss_pred HHH
Q 009374 516 HLH 518 (536)
Q Consensus 516 ~L~ 518 (536)
++.
T Consensus 93 ~~~ 95 (231)
T 4a74_A 93 HIY 95 (231)
T ss_dssp TEE
T ss_pred cEE
Confidence 543
No 104
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.69 E-value=1.3e-09 Score=101.48 Aligned_cols=66 Identities=23% Similarity=0.208 Sum_probs=52.3
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~ 522 (536)
|++++|+|||||||||++++|++ |.+|.+.++|.++.. ....|+++|.....+.+|++|++...++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH-------MVVGGYRPPWESDELLALTWKNITDLTV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT-------TCCTTCCCGGGCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh-------hhccccccCccchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987 678999999866521 1246788887655667789999887654
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.67 E-value=9.4e-09 Score=97.36 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=44.2
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCC--CCCCHHHHHHH
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW--DALSGEEHLHL 519 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~--~~lTv~e~L~~ 519 (536)
.++|+++||+|+|||||||++++|+|++.| .+++++|++.++ ..+|++|++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~ 57 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------------------RVALLPMDHYYKDLGHLPLEERLRV 57 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------------------CeEEEecCccccCcccccHHHhcCC
Confidence 578999999999999999999999999865 478899988777 56888887654
No 106
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.65 E-value=1.7e-09 Score=102.04 Aligned_cols=81 Identities=15% Similarity=0.043 Sum_probs=56.5
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 515 (536)
.+.+..+..++|++++|+|+|||||||++++|+|.+ |.+.++|.++.. .....+...|+.+|+..+++.+++.|
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~ 91 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLA 91 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHH
Confidence 344444667889999999999999999999999987 899999987742 21222335789999888788888888
Q ss_pred HHHHHHH
Q 009374 516 HLHLFAN 522 (536)
Q Consensus 516 ~L~~~~~ 522 (536)
++..-..
T Consensus 92 ~~~~~~~ 98 (200)
T 4eun_A 92 EWMDARA 98 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766443
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.62 E-value=4.8e-09 Score=98.90 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=36.8
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc-----ccCccEEEE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----PVTGGDALI 480 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~-----~pt~G~i~i 480 (536)
.++++|++|.|+. .++++ |.+.+|+.++|+|+||||||||++.|+|.. .|+.|++..
T Consensus 3 ~l~~~~~~~~~~~----------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA----------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE----------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec----------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 3788999999952 37887 889999999999999999999999999998 889898765
No 108
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.59 E-value=4.1e-09 Score=109.26 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=50.8
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCEecCCcccHHHhhcceEEEcC
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ 503 (536)
++++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. . ..++.+++++|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e--~---~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE--Y---VFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC--S---CCCCSSSEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh--h---hhccCceEEEe
Confidence 456655 7899999999999999999999999999998 899987776552 1 24567899999
No 109
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.56 E-value=2.6e-09 Score=104.10 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=57.2
Q ss_pred cCcEEEEeCCCCCchhHHHHhHc---CccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~ 520 (536)
++++++|+|+|||||||++++|+ |+..|+.|++.++|.+.. . ...+.++.++|+..+++++|+.|++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~--~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~ 98 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS--T---EVGEMAKQYIEKSLLVPDHVITRLMMSE 98 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT--C---HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC--C---hHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999 999999999988775431 1 2334456678888888999999998763
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.56 E-value=2.5e-08 Score=113.30 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=31.5
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
+|+|+||+|++||++||+|+||||||||+++|.
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 799999999999999999999999999999864
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.56 E-value=6.2e-08 Score=109.58 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.4
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHh-HcCcc
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISC-LTGIT 471 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~-l~g~~ 471 (536)
+|+|+||+|++||++||+|+||||||||+++ |+|++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 6999999999999999999999999999997 77654
No 112
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.54 E-value=5.7e-09 Score=104.48 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=44.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~ 484 (536)
.+|+++++.+++|++++|+|+|||||||++++|+|...|++| .|.+.+.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 589999999999999999999999999999999999999988 67554433
No 113
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.51 E-value=1.5e-08 Score=99.20 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=54.0
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHc---CccccCccEEE--------EcCEecCCcccHHHhhcceEEEcCCC
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~--------i~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
++|++++|+|+|||||||+.++|+ |+..+++|.++ .+|.++.......++++.+|+++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999999 89988854445677888999999753
No 114
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.50 E-value=7.9e-09 Score=95.22 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=44.2
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecCCcc--cHHHhh-cceE----EEcCCCCCC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSV--SMTNIQ-KSIG----VCPQFNILW 508 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~~~~--~~~~~~-~~ig----~~pQ~~~l~ 508 (536)
++++|+|+|||||||++++|.|+++|+ .|+|.++|.++.+.. +.+.+| +.+| +++|+..+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 689999999999999999999999998 899999998864211 134555 4677 899987766
No 115
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.50 E-value=1.4e-09 Score=111.10 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=64.9
Q ss_pred ceeeceeEEEecC-------cEEEEeCCCCCchhHHHHhHcCcc----ccCccEEEEcCEecCCcccHHHh-hcceEEEc
Q 009374 435 HAIKGLWVNIAKD-------QLFCLLGPNGAGKTTTISCLTGIT----PVTGGDALIYGFSIRSSVSMTNI-QKSIGVCP 502 (536)
Q Consensus 435 ~al~~lsl~v~~g-------ei~~LlG~NGaGKSTll~~l~g~~----~pt~G~i~i~g~~i~~~~~~~~~-~~~ig~~p 502 (536)
.+++++++.+.+| +.++|.||||+|||||+++++|.. .+++|++..+|.++. .-.... ++.+++++
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~--~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA--AILTSLERGDVLFID 109 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH--HHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH--HHHHHccCCCEEEEc
Confidence 5899999999887 899999999999999999999998 788888777665542 111122 45799999
Q ss_pred CCCCCCCCCCHHHHHHHH
Q 009374 503 QFNILWDALSGEEHLHLF 520 (536)
Q Consensus 503 Q~~~l~~~lTv~e~L~~~ 520 (536)
|.+.+.+ ++.|+|...
T Consensus 110 E~~~l~~--~~~e~L~~~ 125 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSA 125 (334)
T ss_dssp TGGGCCH--HHHHHHHHH
T ss_pred chhhcCH--HHHHHHHHH
Confidence 9988876 788888543
No 116
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.49 E-value=3.4e-08 Score=100.19 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=67.0
Q ss_pred eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCccc---HHHh-----hcceEEE-cCCCCC
Q 009374 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVS---MTNI-----QKSIGVC-PQFNIL 507 (536)
Q Consensus 437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~---~~~~-----~~~ig~~-pQ~~~l 507 (536)
+++++|.+++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..... ...+ +.+++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 368889999999999999999999999999999999999999999888743211 1233 5679999 787666
Q ss_pred CCCCCHHHHHHHH
Q 009374 508 WDALSGEEHLHLF 520 (536)
Q Consensus 508 ~~~lTv~e~L~~~ 520 (536)
.+..++.+++...
T Consensus 175 ~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 175 DPASVVFDAIKKA 187 (320)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666777877654
No 117
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.48 E-value=4.2e-08 Score=113.62 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=41.9
Q ss_pred ceEEEee-----eEEEcCCCCcCccccccCCCCCcceeeceeEEEec-------CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 405 VAVQIRG-----LVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK-------DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 405 ~~i~~~~-----l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~-------gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
..+++++ |.+.|.+. ..+++|++|++++ |++++|+|||||||||+||++ |+..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--------------~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--------------DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CC--------------CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCC--------------ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4689999 99888432 1589999999987 999999999999999999999 9986
Q ss_pred c
Q 009374 473 V 473 (536)
Q Consensus 473 p 473 (536)
+
T Consensus 814 ~ 814 (1022)
T 2o8b_B 814 V 814 (1022)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.47 E-value=3.4e-09 Score=109.64 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=52.3
Q ss_pred eeeceeEEEec--CcEEEEeCCCCCchhHHHHhHcCccccCc----cEEEEc----CEecCCcccHHHhhcceEEEcCCC
Q 009374 436 AIKGLWVNIAK--DQLFCLLGPNGAGKTTTISCLTGITPVTG----GDALIY----GFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 436 al~~lsl~v~~--gei~~LlG~NGaGKSTll~~l~g~~~pt~----G~i~i~----g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
..+.|+++|++ |+.++|+|+||||||||+++|+|+++|++ |+++++ |.++. ...++. +.+++++|..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~--~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQA--MQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTS--SCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCccc--CChhHH-HHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 998874 43331 112223 3477777754
Q ss_pred C
Q 009374 506 I 506 (536)
Q Consensus 506 ~ 506 (536)
.
T Consensus 234 ~ 234 (365)
T 1lw7_A 234 I 234 (365)
T ss_dssp H
T ss_pred H
Confidence 3
No 119
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.47 E-value=2.1e-08 Score=92.96 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=35.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
.++|+||||||||||+++|+|++. +.++|.+.... .....++.+||++|+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~-~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEV-RDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEE-C------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhh-ccccccceeEEEeecC
Confidence 579999999999999999999985 55677654211 0113467899999974
No 120
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.47 E-value=1.4e-08 Score=95.61 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=31.2
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCccc-------------cCccEEEEcCEec
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI 485 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~~-------------pt~G~i~i~g~~i 485 (536)
+++|++++|+||||||||||+++|+|+++ |..|+ ++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~ 53 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDY 53 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTB
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceE
Confidence 35799999999999999999999999875 67776 467654
No 121
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.46 E-value=1.9e-08 Score=104.56 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=63.2
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcC------------ccccCccEEEEcCEecCCcccHHHhhcce---EEEcCCCCC
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTG------------ITPVTGGDALIYGFSIRSSVSMTNIQKSI---GVCPQFNIL 507 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g------------~~~pt~G~i~i~g~~i~~~~~~~~~~~~i---g~~pQ~~~l 507 (536)
.+.+|+.+||+|+||||||||+|+|+| ...|+.|.+.+.|..+....+.-..++.+ ..+.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 66799999999875431111111122333 488899999
Q ss_pred CCCCCHHHHH--HHHHHhcCC
Q 009374 508 WDALSGEEHL--HLFANIKGL 526 (536)
Q Consensus 508 ~~~lTv~e~L--~~~~~lkg~ 526 (536)
.+.++..|.| .+.+.+++.
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~ 116 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV 116 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC
T ss_pred ccCCcHHHHHHHHHHHHHHHH
Confidence 9999988887 777777654
No 122
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.43 E-value=1.8e-08 Score=113.24 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=50.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-cCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSG 513 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv 513 (536)
.+++|++|+ |++++|+|||||||||++|+++|+.. +..|.+. . ..+..+|+++| +++.+++
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p------a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P------AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S------SSEEEECCCSE---EEEECCC
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e------hhccceeeHHH---hhccCCH
Confidence 689999999 99999999999999999999999874 6777642 1 11346888887 6788899
Q ss_pred HHHHHH
Q 009374 514 EEHLHL 519 (536)
Q Consensus 514 ~e~L~~ 519 (536)
.|++..
T Consensus 629 ~d~l~~ 634 (765)
T 1ewq_A 629 SDDLAG 634 (765)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 998754
No 123
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.43 E-value=1.5e-09 Score=102.25 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=29.8
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
+++++|++++|+|+|||||||++++|++...|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 35789999999999999999999999999977655
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.43 E-value=6e-09 Score=105.70 Aligned_cols=72 Identities=15% Similarity=0.020 Sum_probs=56.1
Q ss_pred cEEEEeCCCCCchhHHHHhHcCcc--------ccCccEEEEcCEecCCccc--------------HHHhhcceEEE---c
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGIT--------PVTGGDALIYGFSIRSSVS--------------MTNIQKSIGVC---P 502 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~--------~pt~G~i~i~g~~i~~~~~--------------~~~~~~~ig~~---p 502 (536)
++++|+|+|||||||++++|.|.. .|+.|++.|+|.++..... ..+.++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999987 7899999999998753210 22345567877 6
Q ss_pred CCCCCCCCCCHHHHHHH
Q 009374 503 QFNILWDALSGEEHLHL 519 (536)
Q Consensus 503 Q~~~l~~~lTv~e~L~~ 519 (536)
|+..++.++++.|++.+
T Consensus 85 q~~~~~~~~~v~E~~~l 101 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGM 101 (318)
T ss_dssp HHTSCCCSEEEEEEETT
T ss_pred hcCCCCCCEEEEeCCCC
Confidence 87776677777776543
No 125
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.41 E-value=5.7e-08 Score=92.04 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=38.2
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCcccc---CccEEEEcCEec
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFSI 485 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~~p---t~G~i~i~g~~i 485 (536)
.++|++++|+||||||||||+++|+|+++| +.|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 578999999999999999999999999986 478999998776
No 126
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.39 E-value=7.1e-08 Score=97.91 Aligned_cols=69 Identities=16% Similarity=0.313 Sum_probs=52.9
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc----------------------------------------------
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT---------------------------------------------- 471 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~---------------------------------------------- 471 (536)
+++++++.+| +++|+|+|||||||++++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3568888899 99999999999999999998443
Q ss_pred ----ccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCC
Q 009374 472 ----PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW 508 (536)
Q Consensus 472 ----~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~ 508 (536)
.+.+|.++++|.+++ ..+.....+.+|++||+..+.
T Consensus 95 r~~~~~~~~~~~ing~~~~-~~~~~~~~~~~g~~~~~~~lv 134 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVR-LKDIRDRFAGTGLGVDFYSIV 134 (322)
T ss_dssp EEEETTSCEEEEETTEEEC-HHHHHHHTTTSSTTTTCCSEE
T ss_pred EEEEcCCceEEEECCcCcc-HHHHHHHHHHcCCChhheeeE
Confidence 234578899998874 345556666788878766554
No 127
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.39 E-value=4e-09 Score=104.74 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=52.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQF 504 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~ 504 (536)
.+++++++.+++| ++|.||||+|||||+++|+|...+ |.+.++|.++... ...+.++.+++++|.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~-~~~~~~~~i~~vf~~ 98 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNM-YVGESERAVRQVFQR 98 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSS-TTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhh-hhhHHHHHHHHHHHH
Confidence 5899999999999 999999999999999999999876 7999999887432 122334456666665
No 128
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.38 E-value=7.9e-08 Score=98.84 Aligned_cols=77 Identities=21% Similarity=0.184 Sum_probs=55.5
Q ss_pred ceeeceeE-------EEecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374 435 HAIKGLWV-------NIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 435 ~al~~lsl-------~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~ 506 (536)
..++++.+ .+.+|++++++||||||||||+++|+|+++|+ +|.+...+.++. . ..+...++++|...
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--~---~~~~~~~~v~q~~~ 178 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--F---VHESKKCLVNQREV 178 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--S---CCCCSSSEEEEEEB
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--h---hhhccccceeeeee
Confidence 34555555 67899999999999999999999999999998 566654443332 1 12334567888766
Q ss_pred CCCCCCHHHH
Q 009374 507 LWDALSGEEH 516 (536)
Q Consensus 507 l~~~lTv~e~ 516 (536)
..+.+|..+-
T Consensus 179 ~~~~~~~~~~ 188 (356)
T 3jvv_A 179 HRDTLGFSEA 188 (356)
T ss_dssp TTTBSCHHHH
T ss_pred ccccCCHHHH
Confidence 6666777663
No 129
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.38 E-value=6.6e-08 Score=89.93 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=25.7
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVT 474 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt 474 (536)
|++++|+|||||||||++++|+|+++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 6789999999999999999999999843
No 130
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.37 E-value=1.6e-08 Score=103.96 Aligned_cols=76 Identities=20% Similarity=0.128 Sum_probs=57.4
Q ss_pred ceeece-eEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCc----cE-EEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374 435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTG----GD-ALIYGFSIRSSVSMTNIQKSIGVCPQFNI 506 (536)
Q Consensus 435 ~al~~l-sl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~----G~-i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~ 506 (536)
..||++ .+.+++|++++|+||||||||||++.+++.. +|++ |+ ++|++.+.. .++++++++|...
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-------~~~~i~~i~q~~~ 190 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-------RPERIREIAQNRG 190 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-------CHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-------CHHHHHHHHHHcC
Confidence 467776 6899999999999999999999999999998 7777 67 899986641 1234666677665
Q ss_pred CCCCCCHHHHHH
Q 009374 507 LWDALSGEEHLH 518 (536)
Q Consensus 507 l~~~lTv~e~L~ 518 (536)
++++ ++.||+.
T Consensus 191 ~~~~-~v~~ni~ 201 (349)
T 1pzn_A 191 LDPD-EVLKHIY 201 (349)
T ss_dssp CCHH-HHGGGEE
T ss_pred CCHH-HHhhCEE
Confidence 5544 5555443
No 131
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.37 E-value=1.3e-08 Score=95.81 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=45.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE--EEcCEecC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA--LIYGFSIR 486 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i--~i~g~~i~ 486 (536)
.+.++.++..++|++++|+|+|||||||+.++|++.+. ..|.+ +++|.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 57788889899999999999999999999999999998 77988 89887763
No 132
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.34 E-value=2.5e-07 Score=105.50 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=28.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll 464 (536)
.+|+|+||+|++||++||+|+||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 479999999999999999999999999997
No 133
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.34 E-value=3.4e-08 Score=94.26 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=46.0
Q ss_pred ceeeceeE-EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 435 ~al~~lsl-~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+||++.. .+++|++++|+|+|||||||+++.+++...+++|.+.+.+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 58999998 8999999999999999999999999999888888888766554
No 134
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.32 E-value=1.7e-07 Score=90.28 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=52.5
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcC--cccc-----CccEEEEcCEecCCcccHHHhhcceEEEcC----CCCCCCCC
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTG--ITPV-----TGGDALIYGFSIRSSVSMTNIQKSIGVCPQ----FNILWDAL 511 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g--~~~p-----t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ----~~~l~~~l 511 (536)
.+++|++++|+|||||||||+++.+++ ..+| ..|.+++++.+........+..+.+|+.+| +-.+....
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 589999999999999999999999999 5655 678999998763212223344556777774 22222345
Q ss_pred CHHHHH
Q 009374 512 SGEEHL 517 (536)
Q Consensus 512 Tv~e~L 517 (536)
+..+..
T Consensus 100 ~~~~~~ 105 (243)
T 1n0w_A 100 NTDHQT 105 (243)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 555543
No 135
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.30 E-value=2.5e-07 Score=105.52 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=31.5
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
+|+|+||+|++||++||+|+||||||||+++|.
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 799999999999999999999999999999963
No 136
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.25 E-value=8.2e-08 Score=93.88 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=35.4
Q ss_pred ceEEEeee-EEEcCCCCcCccccccCCCCCcceeeceeEEEec---CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 405 VAVQIRGL-VKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK---DQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 405 ~~i~~~~l-~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~---gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
..++++|+ +|.|++. ..+|+|+||++.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~--------------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--------------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc--------------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 9999322 2699999999999 9999999999999999999999854
No 137
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.23 E-value=1.2e-07 Score=107.17 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=47.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE 514 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~ 514 (536)
.+++|++|+ ++|++++|+|||||||||++|+++|+..+.. .|..+. . -+..+|+++| ++..+++.
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-----~G~~vp--a----~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-----IGSYVP--A----QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-----TTCCBS--S----SEEEECCCCE---EEEEEC--
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-----cCcccc--h----hcccceeHHH---HHhhCCHH
Confidence 589999999 9999999999999999999999999854321 122221 1 1245777766 67888888
Q ss_pred HHHHH
Q 009374 515 EHLHL 519 (536)
Q Consensus 515 e~L~~ 519 (536)
|++..
T Consensus 661 d~l~~ 665 (800)
T 1wb9_A 661 DDLAS 665 (800)
T ss_dssp -----
T ss_pred HHHHh
Confidence 88754
No 138
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.22 E-value=5.3e-07 Score=83.07 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=35.5
Q ss_pred ee--eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 436 AI--KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 436 al--~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
.+ +++++++.+| +++|+|+|||||||++++|.+++.++.|
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 56 7889999999 9999999999999999999998776554
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.12 E-value=1.3e-07 Score=86.62 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=46.0
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhh-cceEEEcCCCCCCCCCCHHHHH
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ-KSIGVCPQFNILWDALSGEEHL 517 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L 517 (536)
.+|++++|+|+|||||||+.++|++.+ |.+.+++.++.. . ..++ ...|+.+|+...++.+++.|++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 72 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--R-RNIEKMASGEPLNDDDRKPWLQALNDA 72 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--H-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--h-HHHHHhhcCcCCCccccccHHHHHHHH
Confidence 468999999999999999999999975 888999877632 1 1222 2356666654444445555554
No 140
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.10 E-value=8.2e-09 Score=102.41 Aligned_cols=81 Identities=14% Similarity=0.043 Sum_probs=59.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC-CCCCCCH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSG 513 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv 513 (536)
.+++++++.+++| +.|+||||+||||++++|++... .|.+.++|.++... .....++.+++++|... ..+.+++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM-FVGVGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHS-TTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHH-HhhHHHHHHHHHHHHHHhcCCcEEe
Confidence 5899999999999 89999999999999999999885 78999998765211 11122344666677532 4556666
Q ss_pred HHHHHHH
Q 009374 514 EEHLHLF 520 (536)
Q Consensus 514 ~e~L~~~ 520 (536)
.|++...
T Consensus 138 iDeid~l 144 (278)
T 1iy2_A 138 IDEIDAV 144 (278)
T ss_dssp EETHHHH
T ss_pred hhhhHhh
Confidence 6666544
No 141
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.06 E-value=2.8e-07 Score=95.33 Aligned_cols=70 Identities=26% Similarity=0.453 Sum_probs=51.2
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC-CCCCCCH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSG 513 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv 513 (536)
.+++++++++++|++++|.|||||||||++++|+|. .+|++...+ . .. +..+..+|++||... ++++++.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~--~~--~~~~~~lg~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L--PL--DRLNFELGVAIDQFLVVFEDVKG 227 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S--CT--TTHHHHHGGGTTCSCEEETTCCC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c--cc--hhHHHHHHHhcchhHHHHHHHHH
Confidence 589999999999999999999999999999999985 367765411 1 11 122334778888764 4555543
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.03 E-value=1.2e-06 Score=78.51 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=40.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc--EEEEcCEecC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSIR 486 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G--~i~i~g~~i~ 486 (536)
.+++++ +|+.++|+||||+|||||+++++|...+ +| .+++++.++.
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP 76 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence 466666 8999999999999999999999999987 58 8888887663
No 143
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.02 E-value=2.2e-06 Score=89.85 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=33.3
Q ss_pred eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+++.|++++|+|+||||||||+++|+|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 47999999999999999999999999999999983
No 144
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.01 E-value=2.5e-06 Score=97.64 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=38.1
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhH--------cCccccCcc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL--------TGITPVTGG 476 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l--------~g~~~pt~G 476 (536)
.+++|++|++.+|++++|+|||||||||+||++ .|..-|.++
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 589999999999999999999999999999999 787766654
No 145
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.99 E-value=1.4e-06 Score=99.41 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=34.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
.+++|++|++++|++++|+|||||||||+||+++++
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 689999999999999999999999999999999754
No 146
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.99 E-value=3.2e-06 Score=86.85 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=32.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
..++++++++.+| +++|+|||||||||++++|.+
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3678999999999 999999999999999999997
No 147
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.98 E-value=8.1e-08 Score=93.71 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=59.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC-CCCCCCCH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN-ILWDALSG 513 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv 513 (536)
.+++++++.+++| +.|+||||+||||+++++++... .|.+.++|.++... .....++.++.++|.. ...+.+++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM-FVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHS-CTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHH-HhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 5899999999999 89999999999999999999885 78999998765211 1112234466677753 24556666
Q ss_pred HHHHHHHH
Q 009374 514 EEHLHLFA 521 (536)
Q Consensus 514 ~e~L~~~~ 521 (536)
.|++...+
T Consensus 114 ~Deid~l~ 121 (254)
T 1ixz_A 114 IDEIDAVG 121 (254)
T ss_dssp EETHHHHH
T ss_pred ehhhhhhh
Confidence 66664443
No 148
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.97 E-value=2.6e-06 Score=81.86 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=46.8
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC-----cccHHH----hhcceEEEcCCCCCCCC
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-----SVSMTN----IQKSIGVCPQFNILWDA 510 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~-----~~~~~~----~~~~ig~~pQ~~~l~~~ 510 (536)
..++|++++|.|+|||||||++++|+|. .|+|.+.|.+... .....+ .++.+++++|...++..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~ 88 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTM 88 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHH
Confidence 4578999999999999999999999998 7889998876521 011211 13457888886555443
No 149
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.96 E-value=4.6e-07 Score=98.27 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=38.7
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEE-EcCEec
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DAL-IYGFSI 485 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~-i~g~~i 485 (536)
.+++|++++|+|+|||||||++++|+|.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 674 888665
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.96 E-value=6.2e-06 Score=82.54 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=35.4
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEec
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSI 485 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~i 485 (536)
.+|++++++|+||+||||+++.|++.+.+++| +|.+-+.|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 47999999999999999999999999998888 666655444
No 151
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=2.2e-06 Score=79.16 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.5
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcccc-CccEEE
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDAL 479 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~ 479 (536)
.+|++++|+|||||||||++++|.+..++ ..|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999998864 445554
No 152
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.95 E-value=1.8e-06 Score=81.23 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=37.8
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.++|++++|.|+|||||||++++|++.+++..|.+.+.+.|.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 567899999999999999999999999999999998876654
No 153
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.95 E-value=2.1e-06 Score=92.78 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=62.7
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc----------------------c----------------ccCcc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI----------------------T----------------PVTGG 476 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~----------------------~----------------~pt~G 476 (536)
..++++++++.+| +.+|+|+|||||||++.+|.++ + ....+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~ 127 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCC
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCc
Confidence 3678899999999 9999999999999999999554 3 23356
Q ss_pred EEEEcCEecCCcccHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374 477 DALIYGFSIRSSVSMTNI-QKSIGVCPQFNILWDALSGEEHLHLFANI 523 (536)
Q Consensus 477 ~i~i~g~~i~~~~~~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l 523 (536)
++++||..+.. .+..++ ...+.+.+|++.+... ...++..+....
T Consensus 128 ~~~ing~~v~~-~~l~~~~~~li~i~~q~~~~~l~-~~~~rr~~LD~~ 173 (517)
T 4ad8_A 128 AARLSGEVVSV-RELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRR 173 (517)
T ss_dssp EEESSSSBCCH-HHHHHHHTTTEEEESGGGGGTTT-SHHHHHHHHHTS
T ss_pred EEEECCEECCH-HHHHHHhhhheEEeCCchHHhcC-CHHHHHHHHHHH
Confidence 78899987742 223333 4568999999876653 556666665443
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.94 E-value=8.1e-07 Score=84.72 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=47.7
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc---ccCccEEEE--------cCEecCCcccHHHhhcceEEEcCCC
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDALI--------YGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~---~pt~G~i~i--------~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
.+.+++|+|++||||||+.++|++.+ .++.|++.. +|.++........+++.+|+.+|..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 35789999999999999999999876 788899887 6776642234456778899998863
No 155
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.91 E-value=3.6e-06 Score=87.78 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=49.4
Q ss_pred eeece-eEEEecCcEEEEeCCCCCchhHHHH--hHcCccccCcc-----EEEEcCEecCCcccHHHhhcceEEEcC
Q 009374 436 AIKGL-WVNIAKDQLFCLLGPNGAGKTTTIS--CLTGITPVTGG-----DALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (536)
Q Consensus 436 al~~l-sl~v~~gei~~LlG~NGaGKSTll~--~l~g~~~pt~G-----~i~i~g~~i~~~~~~~~~~~~ig~~pQ 503 (536)
.||.+ .=.+++|+++.|.|+||+|||||++ ++.+..+++.| .+++++.+.........+.+++|+.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 45543 2479999999999999999999999 45677777555 899998764222223445566787776
No 156
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.89 E-value=1.7e-06 Score=79.58 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=32.0
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~ 477 (536)
+.+++|+.++|.||||+|||||++++++...|.+|.
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 445679999999999999999999999999877774
No 157
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.88 E-value=3.2e-06 Score=85.05 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=42.6
Q ss_pred eeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 440 lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
+++...+|++++++|+||+||||++..|++.+.++.|+|.+.+.|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 45667889999999999999999999999999999999999888874
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.84 E-value=7.6e-06 Score=75.91 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=32.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCcccc-----------CccEEEEcCEec
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPV-----------TGGDALIYGFSI 485 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~p-----------t~G~i~i~g~~i 485 (536)
.++|+|+||||||||++.++|...+ ++|++.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5799999999999999999998765 578999999764
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=5.8e-06 Score=77.44 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=24.7
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.+++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5999999999999999999999999999999999765
No 160
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.82 E-value=1.8e-06 Score=87.23 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=40.3
Q ss_pred ceeeceeEEEecCc------EEEEeCCCCCchhHHHHhHcCccc--cCccEEEEcC
Q 009374 435 HAIKGLWVNIAKDQ------LFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYG 482 (536)
Q Consensus 435 ~al~~lsl~v~~ge------i~~LlG~NGaGKSTll~~l~g~~~--pt~G~i~i~g 482 (536)
.++++++..+.+++ ++||.|+|||||||++++|.+++. |++|.+.+-+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 57888888888877 999999999999999999999987 5677755433
No 161
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.81 E-value=4.9e-06 Score=83.26 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=43.7
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++++++ +|++++++|+||+||||+...|+|.+.+..|++.+.+.|..
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 677887 99999999999999999999999999999999999998875
No 162
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.78 E-value=6.8e-06 Score=77.15 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=33.1
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCccc-------------cCccEEEEcCEec
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI 485 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~-------------pt~G~i~i~g~~i 485 (536)
+...+|++++|+||||||||||++.|.+..+ |..|+ ++|.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y 68 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEY 68 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccc
Confidence 3445899999999999999999999998875 56666 566553
No 163
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.78 E-value=9.2e-06 Score=76.75 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=27.4
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
++|++++|+|||||||||++++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 164
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.77 E-value=9.4e-06 Score=85.51 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=29.5
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
+++.+|++++|+|||||||||++++|+++..++++
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 45678999999999999999999999999888653
No 165
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.76 E-value=3.3e-06 Score=86.27 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=47.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
.+++++++.+.+|.+++++|+|||||||+++.|+|...+..|++.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 588999999999999999999999999999999999998888888877665
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.73 E-value=5.3e-06 Score=91.33 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=55.6
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc-cEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFSIRSSVSMTNIQKSIGVCPQFN 505 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~-G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~ 505 (536)
.+++++++.+.+|+.+.|+||||+||||+.++|+|+.+++. |.+.+++.+.. .....+++|||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~------~~~p~i~~~p~g~ 113 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED------ENMPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC------TTSCEEEEEETTH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc------ccCCcEEEEecch
Confidence 68999999999999999999999999999999999999888 88888876542 2345688888753
No 167
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.73 E-value=1.2e-05 Score=82.79 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=31.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
..++++++++.+| +++|+|||||||||++++|+.
T Consensus 12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cCccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999 899999999999999999983
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.67 E-value=2.1e-05 Score=73.25 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=30.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCccc-----cC------ccEEEEcCEec
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITP-----VT------GGDALIYGFSI 485 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~-----pt------~G~i~i~g~~i 485 (536)
.++|+|+||||||||++.++|... |+ .|++.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 479999999999999999999842 43 67899999754
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.65 E-value=9.8e-06 Score=76.46 Aligned_cols=48 Identities=21% Similarity=0.091 Sum_probs=40.8
Q ss_pred ceeeceeE-EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl-~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
..||++.. .+++|++++|.|+|||||||+++.+++ .+..+.+++++.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence 57888876 899999999999999999999999999 5555667777654
No 170
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.63 E-value=6.3e-06 Score=79.20 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=38.1
Q ss_pred ceeece-eEEEecCcEEEEeCCCCCchhHHH-HhHcCccccCccEEEEcCEe
Q 009374 435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTI-SCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~l-sl~v~~gei~~LlG~NGaGKSTll-~~l~g~~~pt~G~i~i~g~~ 484 (536)
..||++ .-.+++|+++.|.|+|||||||+. +++.+..+...+.+++.+..
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 467776 678999999999999999999995 45555555555666666543
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=1.3e-05 Score=81.54 Aligned_cols=55 Identities=25% Similarity=0.179 Sum_probs=33.8
Q ss_pred EEEeCCCCCchhHHHHhHcC-ccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCC
Q 009374 450 FCLLGPNGAGKTTTISCLTG-ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNIL 507 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g-~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l 507 (536)
+.|.||||+||||++++++| +..|+.|++.++|.+... ....+..+++++|.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~---~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT---ASNRKLELNVVSSPYHL 94 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------CCEECSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc---cccccceeeeecccceE
Confidence 78999999999999999999 889999999999987632 11225678899987654
No 172
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.58 E-value=2e-05 Score=80.78 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=37.0
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
+++.+++|+|++|||||||++.|+|...+++|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 356899999999999999999999999999999988887653
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.54 E-value=2.4e-05 Score=80.07 Aligned_cols=83 Identities=20% Similarity=0.184 Sum_probs=62.9
Q ss_pred eeeceeE--EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE-EEcCEecCCcccHHHhhcceEEEcCCCCCCCCCC
Q 009374 436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALS 512 (536)
Q Consensus 436 al~~lsl--~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i-~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lT 512 (536)
.||.+-= .+++|+++.|.||+|+|||||+..+++...+..|.+ ++++.... +. ...+++|+.+|+..+....+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~-~ra~rlgv~~~~l~i~~~~~ 123 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DP-VYAKNLGVDLKSLLISQPDH 123 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CH-HHHHHHTCCGGGCEEECCSS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---ch-HHHHHcCCchhhhhhhhccC
Confidence 4555433 699999999999999999999999999988877865 77775542 11 23456888888877777788
Q ss_pred HHHHHHHHHH
Q 009374 513 GEEHLHLFAN 522 (536)
Q Consensus 513 v~e~L~~~~~ 522 (536)
+.+.+.....
T Consensus 124 ~e~~l~~~~~ 133 (356)
T 3hr8_A 124 GEQALEIVDE 133 (356)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 174
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.54 E-value=3.8e-05 Score=72.07 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=28.7
Q ss_pred eeEEEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 440 lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
+-=++++|++++|.|++||||||+.++|++.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 334577899999999999999999999999864
No 175
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.53 E-value=1.2e-05 Score=87.43 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=43.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQF 504 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~ 504 (536)
.+++++++++ +|++++|+||||+||||+.++|++...+..|++.+.|..... ......++.+|..+|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~-~~~g~~~~~ig~~~~~ 164 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES-EIRGHRRTYVGAMPGR 164 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------------C
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh-hhhhHHHHHhccCchH
Confidence 5788888888 899999999999999999999999999999999887743210 0111223456666553
No 176
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.48 E-value=2.5e-05 Score=84.45 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=37.1
Q ss_pred eEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE--EEEcCEe
Q 009374 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD--ALIYGFS 484 (536)
Q Consensus 441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~--i~i~g~~ 484 (536)
+..+++|++++|.|+||||||||+++++|..+|+ |+ +++.+++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee 319 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE 319 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence 4499999999999999999999999999999886 65 5666644
No 177
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.43 E-value=6.1e-05 Score=79.49 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=32.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCccc------------cCccEEEEcCEec
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFSI 485 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~------------pt~G~i~i~g~~i 485 (536)
.++|+|+||+|||||++.|+|... +.+|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 689999999999999999999853 6779999999864
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.38 E-value=5.2e-05 Score=68.73 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=27.6
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
.|++++|+|+|||||||+.++|++.+.+ ..+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 45554
No 179
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.37 E-value=9.6e-05 Score=66.02 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=24.0
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
++.++++.+ .+++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence 344455554 499999999999999999987
No 180
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=5.3e-06 Score=84.45 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=49.6
Q ss_pred ceeeceeEEEecCcE--EEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEc
Q 009374 435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCP 502 (536)
Q Consensus 435 ~al~~lsl~v~~gei--~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~p 502 (536)
.+++.++..+++|++ +.+.||+|+||||+++++++.+.+..+++.+.+.+..+....+.+|+.++..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 588999999999999 99999999999999999999988777665444444322223344454444333
No 181
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.33 E-value=7.3e-05 Score=68.43 Aligned_cols=40 Identities=30% Similarity=0.262 Sum_probs=33.2
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccCcc--EEEEcCEec
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSI 485 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G--~i~i~g~~i 485 (536)
++|++++|.|++||||||+.++|++.+++ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46899999999999999999999998876 56 666676544
No 182
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.29 E-value=7.4e-05 Score=78.26 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=43.4
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~ 487 (536)
++++++ ++++++++|+||+||||+...|++.+.+..|++.+.+.|+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 567777 899999999999999999999999999999999998888743
No 183
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.29 E-value=8.6e-05 Score=73.96 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=42.3
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~ 519 (536)
++.++||.|++||||||+.+.|.+++.+. | . . ++.+.+++|++.+++. +.++++.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~---------~-~~~~~iv~~D~f~~~~-~~~~~l~~ 85 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G---------G-EKSIGYASIDDFYLTH-EDQLKLNE 85 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G---------G-GSCEEEEEGGGGBCCH-HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C---------C-CceEEEeccccccCCh-HHHHHHhc
Confidence 56899999999999999999999999864 2 0 0 3345555888877764 66677655
No 184
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.29 E-value=5.8e-05 Score=75.45 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=42.6
Q ss_pred ec-eeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 438 KG-LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 438 ~~-lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++ ++++.+ |++++++|+||+||||++..|++.+.+..|++.+.+.|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45 777766 9999999999999999999999999999899999888764
No 185
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.24 E-value=0.00012 Score=72.07 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.8
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.+++|++++|+|+|||||||+++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999999998665
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.20 E-value=5.9e-05 Score=83.80 Aligned_cols=62 Identities=21% Similarity=0.093 Sum_probs=44.0
Q ss_pred eEEEecCcEEEEeCCCCCchhHHHHhHcCcccc--CccEEEEcCEecCCcccHHHhhcceEEEcCC
Q 009374 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQF 504 (536)
Q Consensus 441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~ 504 (536)
++.+++++.++|+||+|+|||||++.|++...+ +.|+| .+|..+.+ ....+.++.+++.+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d-~~~~e~~~giti~~~~ 66 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD-YTPEAKLHRTTVRTGV 66 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC-CSHHHHHTTSCCSCEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc-CCHHHHhcCCeEEecc
Confidence 456788999999999999999999999977654 67887 67766543 2233445566666654
No 187
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.11 E-value=0.00012 Score=69.08 Aligned_cols=44 Identities=18% Similarity=0.093 Sum_probs=38.8
Q ss_pred EEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc--EEEEcCEec
Q 009374 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSI 485 (536)
Q Consensus 442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G--~i~i~g~~i 485 (536)
+.+++|.++.|.|++||||||+.+.|++.+.|..| .+.++|.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999988888 888887554
No 188
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.06 E-value=0.00022 Score=68.41 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=32.5
Q ss_pred ceeeceeEEEe---cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374 435 HAIKGLWVNIA---KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (536)
Q Consensus 435 ~al~~lsl~v~---~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~ 481 (536)
.-+.++++.+. +|.++++.|++||||||+.+.|+..+.+ .+.+...
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 35666777666 8999999999999999999999999887 6676543
No 189
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.03 E-value=0.0004 Score=71.42 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=31.3
Q ss_pred EEEEeCCCCCchhHHHHhHcCccc-----------cCccEEEEcCEec
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITP-----------VTGGDALIYGFSI 485 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~-----------pt~G~i~i~g~~i 485 (536)
+++|+|++|||||||++.|+|... |+.|++.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 489999999999999999999876 6779999998754
No 190
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.03 E-value=0.00035 Score=64.36 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=28.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--------cccCccEEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--------~~pt~G~i~i~g~~ 484 (536)
.+++++++..++. .++++|++|+||||+++.+++- ..++.+++.++|..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 4889999998887 5589999999999999999972 33445677777754
No 191
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.99 E-value=0.00019 Score=66.77 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=39.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--------cccCccEEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--------~~pt~G~i~i~g~~ 484 (536)
.+++++++..+++. ++++|++|+|||||++.+++- ..++.+++.++|..
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 48899999888876 589999999999999999973 33456778887754
No 192
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.97 E-value=0.00052 Score=62.20 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=30.1
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcccc------------CccEEEEcCEe
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPV------------TGGDALIYGFS 484 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~p------------t~G~i~i~g~~ 484 (536)
+|..++|+|++|+|||||++.++|...+ ..+.+.++|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE
Confidence 5778999999999999999999986421 13667777754
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.94 E-value=0.00031 Score=65.68 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=24.4
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
++||+|+|||||||+.++|+++ |...+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6899999999999999999983 5555554
No 194
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.94 E-value=0.00016 Score=74.27 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=45.7
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceee--------------ceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK--------------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~--------------~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.+.++||+..|+..+ ..++ |+.+.+.+||..+|+|++|+||||++++|++..
T Consensus 133 ri~Fe~ltp~yP~er--------------~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSR--------------LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSB--------------CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc--------------cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 367889999998642 3666 899999999999999999999999999999876
Q ss_pred c
Q 009374 472 P 472 (536)
Q Consensus 472 ~ 472 (536)
.
T Consensus 199 ~ 199 (422)
T 3ice_A 199 A 199 (422)
T ss_dssp H
T ss_pred h
Confidence 4
No 195
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.91 E-value=0.00027 Score=72.49 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=33.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC--ccccCccEEEE
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDALI 480 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g--~~~pt~G~i~i 480 (536)
.+|++++++++ .++++|++||||||+++.|+| .+++.+|.++-
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 58999999998 899999999999999999999 55677676643
No 196
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.0003 Score=64.64 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=34.0
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE-EEcCE
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGF 483 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i-~i~g~ 483 (536)
...+|.++.|.|++||||||+.+.|++.+.+..|.+ .+++.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345789999999999999999999999988777766 45543
No 197
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.87 E-value=0.00054 Score=64.33 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=23.3
Q ss_pred ceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
+.++++.+ .+++|.|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455544 599999999999999999875
No 198
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.84 E-value=0.00015 Score=74.44 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=35.5
Q ss_pred eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (536)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~ 477 (536)
.+.+.+|.+.|+++ .+.++.+|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 17 ~v~~~~l~~~~~~k---------------~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQVHRK---------------SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHHHTH---------------HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHhCCe---------------eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 47778888877532 5788898887 999999999999999998876554443
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.81 E-value=0.00032 Score=74.99 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=42.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
.+++++++.+++| +.|.||||+|||||+++|++... .|.+.++|.++.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~ 101 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 101 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence 4788899999999 89999999999999999999875 688999987763
No 200
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.00082 Score=61.17 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=27.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc-----------ccCccEEEEcCEe
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT-----------PVTGGDALIYGFS 484 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~-----------~pt~G~i~i~g~~ 484 (536)
.++|+|++|+|||||++.++|.. .+..|.+.++|..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 47899999999999999999842 2345666666654
No 201
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.79 E-value=0.00058 Score=69.38 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=23.5
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
++..+++.+ .+++|+|||||||||++.+|+
T Consensus 15 ~~~~i~f~~-~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cCeEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 344555544 599999999999999999863
No 202
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.77 E-value=0.00057 Score=70.76 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=32.0
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCc-----------cccCccEEEEcC
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGI-----------TPVTGGDALIYG 482 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~-----------~~pt~G~i~i~g 482 (536)
+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.|
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 456778999999999999999999998 667888887765
No 203
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.73 E-value=0.0013 Score=58.96 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 204
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.69 E-value=0.00051 Score=70.17 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=55.5
Q ss_pred eeeceeE--EEecCcEEEEeCCCCCchhHHHHhHcCccccCccE-EEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCC
Q 009374 436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALS 512 (536)
Q Consensus 436 al~~lsl--~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~-i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lT 512 (536)
.||.+-= .+++|+++.|.|+||+||||+...++.......|. ++++.... .+. ...+.+|+-+|+-.+.+..|
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~---~~~-~~a~~lG~~~~~l~i~~~~~ 123 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA---LDP-EYAKKLGVDTDSLLVSQPDT 123 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC---CCH-HHHHHTTCCGGGCEEECCSS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC---cCH-HHHHHcCCCHHHeEEecCCC
Confidence 4555432 68999999999999999999988887665444444 55655432 111 22345677777655566668
Q ss_pred HHHHHHHHHHh
Q 009374 513 GEEHLHLFANI 523 (536)
Q Consensus 513 v~e~L~~~~~l 523 (536)
+.+.+.....+
T Consensus 124 ~e~~l~~~~~l 134 (349)
T 2zr9_A 124 GEQALEIADML 134 (349)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777665433
No 205
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.60 E-value=0.00067 Score=67.78 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.9
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++..++|+|++|+|||||++.|+|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 455689999999999999999999974
No 206
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.46 E-value=0.00086 Score=62.66 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=26.0
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.+.+|.+++|.||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 367889999999999999999999987663
No 207
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.39 E-value=0.0014 Score=60.19 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=26.1
Q ss_pred ceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
++|+...+|.+++|.|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999765
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.38 E-value=0.0012 Score=69.32 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=36.8
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~ 486 (536)
++.+++++|+||+||||++..|++.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999999899988777753
No 209
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.35 E-value=0.0012 Score=61.34 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHhHcC
Q 009374 449 LFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g 469 (536)
+++|.|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 210
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.34 E-value=0.0016 Score=59.71 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=29.6
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEe
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFS 484 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~ 484 (536)
.++++.|++||||||+++.|.+.+++. -|.+..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 688999999999999999999987654 3677766544
No 211
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.32 E-value=0.00093 Score=62.17 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=28.2
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
..+++|.|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4589999999999999999998875 5556665544
No 212
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.23 E-value=0.00048 Score=70.14 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=34.4
Q ss_pred ceeeceeEEEecCcE--EEEeCCCCCchhHHHHhHcCccc
Q 009374 435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 435 ~al~~lsl~v~~gei--~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478889999999999 99999999999999999998764
No 213
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.16 E-value=0.0024 Score=58.21 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999963
No 214
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.05 E-value=0.0025 Score=58.14 Aligned_cols=25 Identities=44% Similarity=0.546 Sum_probs=22.2
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999983
No 215
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.99 E-value=0.0033 Score=60.10 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.1
Q ss_pred EEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
++|+|++|+|||||++.|+|...+.+|
T Consensus 32 i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 689999999999999999997765544
No 216
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.97 E-value=0.0033 Score=64.58 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=26.7
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
.+++..+++.+ .++.|.|+|||||||++..|.
T Consensus 15 ~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 34667777655 699999999999999999986
No 217
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.93 E-value=0.0013 Score=63.17 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=37.8
Q ss_pred cCcEEEEeCCCCCchhHHHHhHc---CccccCccEEE--------EcCEecCCcccHHHhhcceEEEcC
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQ 503 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~--------i~g~~i~~~~~~~~~~~~ig~~pQ 503 (536)
+.-+++|.||+||||||+.+.|+ |....+.|.++ -.|.+..+.....+..+.+.+.++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~ 76 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVG 76 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEe
Confidence 44589999999999999999999 66566666652 345544322223344455566554
No 218
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.92 E-value=0.0019 Score=62.57 Aligned_cols=41 Identities=29% Similarity=0.220 Sum_probs=33.0
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
...++.++.|.|++||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678999999999999999999998764 35677777654
No 219
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.92 E-value=0.0031 Score=60.31 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.1
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
-.+|.+++|.|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999986
No 220
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.79 E-value=0.0058 Score=55.49 Aligned_cols=36 Identities=36% Similarity=0.432 Sum_probs=28.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc----ccCcc----EEEEcCEe
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT----PVTGG----DALIYGFS 484 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~----~pt~G----~i~i~g~~ 484 (536)
.++++|++|+|||||++.+++.. .||.| ++.+++..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 47899999999999999999873 57777 55566543
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.73 E-value=0.0038 Score=60.28 Aligned_cols=44 Identities=30% Similarity=0.371 Sum_probs=30.1
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
++++...++| +.|.||+|+||||+.+.+++..... -+.+++.++
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 3334444444 7899999999999999999976532 477777665
No 222
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.72 E-value=0.0055 Score=62.66 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=29.7
Q ss_pred CcEEEEeCCCCCchhHHHHhHcC-----------ccccCccEEEEcC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTG-----------ITPVTGGDALIYG 482 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g-----------~~~pt~G~i~i~g 482 (536)
|-.++|+|.+|+|||||++.|+| ...|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34679999999999999999998 3457778887765
No 223
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.71 E-value=0.0039 Score=66.68 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=40.7
Q ss_pred ceeEEEecCcEEEEeCCCCCchhHHHHhHcC--ccccCccEEEEcCEecC
Q 009374 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDALIYGFSIR 486 (536)
Q Consensus 439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g--~~~pt~G~i~i~g~~i~ 486 (536)
.+++++.++..+.+.|.+||||||+++.|.. +..++.|++.+.+.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3678888999999999999999999999876 56777788888877763
No 224
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.58 E-value=0.0018 Score=68.47 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=42.4
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEe
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFS 484 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~ 484 (536)
..||++...+++|+++.|.|++|+||||++..+++...+..| .|.+.+.+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 589999989999999999999999999999999998876555 56555444
No 225
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.44 E-value=0.012 Score=53.56 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=27.4
Q ss_pred EEEeCCCCCchhHHHHhHc-Cc----cccCcc----EEEEcCEec
Q 009374 450 FCLLGPNGAGKTTTISCLT-GI----TPVTGG----DALIYGFSI 485 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~-g~----~~pt~G----~i~i~g~~i 485 (536)
++++|+.|+|||||++.++ +. ..||.| .+.++|..+
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 6899999999999997554 43 567777 677777543
No 226
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.44 E-value=0.0053 Score=63.41 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=31.8
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~ 481 (536)
.+.-+.++|++||||||+++.+.+...+..+.+.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 566789999999999999999999888888888774
No 227
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.38 E-value=0.0089 Score=67.63 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=28.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll 464 (536)
+=|+|||++|++|+++++.|.+|||||||.
T Consensus 24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 359999999999999999999999999986
No 228
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.32 E-value=0.0062 Score=59.50 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCccc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999999754
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.07 E-value=0.01 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+++|.|+.||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998654
No 230
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.02 E-value=0.0043 Score=57.82 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=24.4
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i 478 (536)
++++.|++||||||+.+.|...+.+...++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 678999999999999999998776543333
No 231
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.89 E-value=0.0082 Score=68.03 Aligned_cols=43 Identities=28% Similarity=0.296 Sum_probs=35.6
Q ss_pred eEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
++.+++|+.+.|.||+|+||||+.++|+|..... -+.++|.++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l 274 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEI 274 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHh
Confidence 3468899999999999999999999999987543 367777654
No 232
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.88 E-value=0.013 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcC
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g 469 (536)
++-+++|.|++||||||+.++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 233
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.87 E-value=0.011 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.3
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++.++.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999997643
No 234
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.85 E-value=0.014 Score=66.81 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=28.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll 464 (536)
+=|+|||++|++++++++.|.+|||||||.
T Consensus 34 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 34 HNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 459999999999999999999999999984
No 235
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.84 E-value=0.014 Score=66.59 Aligned_cols=30 Identities=33% Similarity=0.590 Sum_probs=28.0
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHH
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll 464 (536)
+=|+|||++|++++++++.|.+|||||||.
T Consensus 32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 359999999999999999999999999984
No 236
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.71 E-value=0.01 Score=58.86 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=32.6
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.+.++..+.|.||+|+||||+.+++++... .+-+.+++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~ 84 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE 84 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHH
Confidence 456778899999999999999999999764 4667777644
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.70 E-value=0.016 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=22.8
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56889999999999999999987653
No 238
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.68 E-value=0.015 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
|.++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
No 239
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.68 E-value=0.012 Score=53.38 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.4
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVT 474 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt 474 (536)
.++++.|++||||||++..|.+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 478999999999999999999877643
No 240
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.67 E-value=0.016 Score=51.56 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=18.1
Q ss_pred EEEEeCCCCCchhHHHHhH
Q 009374 449 LFCLLGPNGAGKTTTISCL 467 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l 467 (536)
+++|.|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 241
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.65 E-value=0.015 Score=57.37 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=27.5
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
++.++.|.|++||||||+.+.|....+ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 356889999999999999999976542 35667765
No 242
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.59 E-value=0.013 Score=66.94 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=53.7
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHH-H--------------------hHcCccccCccE-------EEEcCEecC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI-S--------------------CLTGITPVTGGD-------ALIYGFSIR 486 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll-~--------------------~l~g~~~pt~G~-------i~i~g~~i~ 486 (536)
+=|+|||++|++++++++.|++|||||||. . -|..+.+|+=.. |-|+-+...
T Consensus 12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLafdtl~aegqrry~es~s~y~r~~l~~~~~p~vd~i~gl~pai~i~q~~~~ 91 (916)
T 3pih_A 12 HNLKNITVRIPKNRLVVITGVSGSGKSSLAMDTIYAEGQRRYLESLSTYARQFLGNLKKPDVDEIEGLSPAIAIDQKTVS 91 (916)
T ss_dssp TTCCSBCCEEETTSEEEEEESTTSSSHHHHTTTHHHHHHHHHHTTSCCC--------CCCSCSEEETCCCEEEECSCC-C
T ss_pred cccCcceeccCCCcEEEEECCCCCcHHHHHHHHHHHHHHHHHHHhccHHHHHhcccCCCCCcCeecCCCceEEEEecCCC
Confidence 469999999999999999999999999985 1 233344554433 334332221
Q ss_pred ----C----cccH----HH--hhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374 487 ----S----SVSM----TN--IQKSIGVCPQFNILWDALSGEEHLHLFA 521 (536)
Q Consensus 487 ----~----~~~~----~~--~~~~ig~~pQ~~~l~~~lTv~e~L~~~~ 521 (536)
+ .+++ +- .|-..-+||....-....|+.+-+....
T Consensus 92 ~n~rstvgt~tei~~~lrll~ar~g~~~cp~~~~~~~~~~~~~~~~~~~ 140 (916)
T 3pih_A 92 HNPRSTVGTVTEIYDYLRVLYARIGKAHCPECGRPLEKKSIDEILQDLF 140 (916)
T ss_dssp CSTTCBHHHHTTHHHHHHHHHHHSCEEBCTTTCCBCBCCCHHHHHHHHH
T ss_pred CCCCCCceeHHHHHHHHHHHHHhcCCcCCCCCCCCcccCCHHHHHHHHH
Confidence 1 0111 11 1223448999888888888877665543
No 243
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.53 E-value=0.017 Score=53.15 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.1
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.+|-+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999998766
No 244
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.47 E-value=0.015 Score=53.46 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=24.6
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g 482 (536)
.+++|.|+.||||||+.+.|+.. |-..++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 57899999999999999999875 5555544
No 245
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.46 E-value=0.014 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.0
Q ss_pred EEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 443 NIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
.+.+|+.+.+.|++||||||++..+..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 356899999999999999998877654
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.40 E-value=0.018 Score=53.12 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.2
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
+.|.||+||||||+++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999998643
No 247
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.39 E-value=0.019 Score=56.36 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999964
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.34 E-value=0.015 Score=59.03 Aligned_cols=49 Identities=20% Similarity=0.089 Sum_probs=36.5
Q ss_pred eeecee-EEEecCcEEEEeCCCCCchhHHHHhHcCc--ccc-----CccEEEEcCEe
Q 009374 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPV-----TGGDALIYGFS 484 (536)
Q Consensus 436 al~~ls-l~v~~gei~~LlG~NGaGKSTll~~l~g~--~~p-----t~G~i~i~g~~ 484 (536)
.||.+- =.+++|+++.|.|++|+||||+...++.. .++ ..+.++++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 344432 36899999999999999999999988875 322 34567887654
No 249
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.27 E-value=0.026 Score=54.77 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|..|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
No 250
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.27 E-value=0.023 Score=57.85 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.4
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.-.++++|++|+|||||++.|+|..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999975
No 251
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.27 E-value=0.02 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999999843
No 252
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.25 E-value=0.03 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++|..|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999865
No 253
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.24 E-value=0.032 Score=49.18 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999873
No 254
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.22 E-value=0.04 Score=55.06 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=30.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
..+++..+.+ .|.-+.+.|++|+||||+...|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 5788888888 889999999999999999988876
No 255
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.20 E-value=0.017 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.216 Sum_probs=21.7
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
.++.++.|.|+.||||||+.+.|+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 356788999999999999999998
No 256
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.18 E-value=0.0087 Score=63.06 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=36.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i 480 (536)
.++|.+ ..+-+|+..+|.|++|+|||||+++|++......|.+.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 477777 778899999999999999999999998876654455544
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.18 E-value=0.019 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++.|.|++||||||+-+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 67899999999999999998754
No 258
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.17 E-value=0.024 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+||||+++.+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998764
No 259
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.11 E-value=0.021 Score=56.38 Aligned_cols=35 Identities=31% Similarity=0.301 Sum_probs=29.2
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccCccEE-EEcC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYG 482 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i-~i~g 482 (536)
..+.|.||+|+||||+.+++++...++.|.+ .++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 5789999999999999999999988777754 4443
No 260
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.09 E-value=0.023 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.++|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999999854
No 261
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.05 E-value=0.023 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|+.|+|||||++.|+|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999999864
No 262
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.021 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+||||+++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999865
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.00 E-value=0.027 Score=51.07 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=21.8
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+.++.|.|+.||||||+-+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999997543
No 264
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.96 E-value=0.024 Score=58.14 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.7
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 265
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.95 E-value=0.028 Score=51.95 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.3
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876654
No 266
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.94 E-value=0.026 Score=52.33 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.7
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
No 267
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.94 E-value=0.02 Score=51.34 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEeCCCCCchhHHHHhHcC
Q 009374 449 LFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g 469 (536)
.++++|++|+|||||++.+++
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999985
No 268
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.94 E-value=0.022 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++.|.|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998754
No 269
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.91 E-value=0.022 Score=52.08 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.8
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++.+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999754
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.89 E-value=0.028 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCchhHHHHhHcC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g 469 (536)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4688999999999999999986
No 271
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.84 E-value=0.028 Score=52.16 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=23.9
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|-+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999998643
No 272
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.84 E-value=0.03 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+.+..
T Consensus 12 i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998853
No 273
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.80 E-value=0.028 Score=49.84 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.++|..
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 6899999999999999998864
No 274
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.77 E-value=0.02 Score=57.56 Aligned_cols=49 Identities=24% Similarity=0.239 Sum_probs=36.3
Q ss_pred eeecee-EEEecCcEEEEeCCCCCchhHHHHhHcCcc-cc------CccEEEEcCEe
Q 009374 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGIT-PV------TGGDALIYGFS 484 (536)
Q Consensus 436 al~~ls-l~v~~gei~~LlG~NGaGKSTll~~l~g~~-~p------t~G~i~i~g~~ 484 (536)
.||.+- =.+++|+++.|.|++|+||||+...++... .+ ..+.++++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 444432 368999999999999999999998887643 33 34567777654
No 275
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.76 E-value=0.031 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred CcEEEEeCCCCCchhHHHHhHcC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g 469 (536)
+.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999998864
No 276
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.64 E-value=0.027 Score=49.49 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+.+.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 277
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.57 E-value=0.033 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999997643
No 278
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.57 E-value=0.028 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+||||+++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
No 279
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.56 E-value=0.037 Score=56.21 Aligned_cols=35 Identities=34% Similarity=0.349 Sum_probs=28.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCccccCc--cEEEEcCE
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITPVTG--GDALIYGF 483 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~pt~--G~i~i~g~ 483 (536)
.+.|.||+|+||||+++.+++...+.. .-++++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 789999999999999999999887652 45666643
No 280
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.56 E-value=0.026 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999765
No 281
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.51 E-value=0.029 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.3
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+||||+++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999998754
No 282
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.49 E-value=0.023 Score=57.51 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=30.7
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccC----ccEEEEcCE
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDALIYGF 483 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt----~G~i~i~g~ 483 (536)
.+++.+.|.||+|+||||+++.+++...+. ...+++++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 346788999999999999999999987653 345666654
No 283
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.48 E-value=0.03 Score=48.91 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+||||+++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998754
No 284
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.48 E-value=0.041 Score=48.99 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.8
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
.-.++++|+.|+||||+++.+++.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999999874
No 285
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.47 E-value=0.03 Score=49.02 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.1
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+.+.
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999864
No 286
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.46 E-value=0.029 Score=50.63 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=17.9
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999997543
No 287
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.44 E-value=0.016 Score=61.44 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=29.2
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.++++++.+++| +.|.||+|+||||+.+++++...
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 566667777777 77999999999999999998653
No 288
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.44 E-value=0.031 Score=50.57 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 47899999999999999998864
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.35 E-value=0.034 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+++|.|++||||||+.++|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998743
No 290
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.34 E-value=0.037 Score=54.97 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++|+|++|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 291
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.33 E-value=0.033 Score=48.89 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 292
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.31 E-value=0.035 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEeCCCCCchhHHHHhHcCccc
Q 009374 450 FCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
++++|+.|+|||||++.+.|...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 58999999999999999998654
No 293
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.30 E-value=0.04 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998765
No 294
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.29 E-value=0.041 Score=49.55 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+||||+++.+++..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998864
No 295
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.28 E-value=0.033 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|+.|||||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 296
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.27 E-value=0.033 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999999865
No 297
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.23 E-value=0.034 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+||||+++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999887653
No 298
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.22 E-value=0.031 Score=49.78 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999875
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.21 E-value=0.029 Score=51.38 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.7
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+.++.+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467789999999999999999997643
No 300
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.21 E-value=0.042 Score=48.26 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.3
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+||||+++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999987643
No 301
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.20 E-value=0.032 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+||||+++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998653
No 302
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.17 E-value=0.035 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+.+-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 303
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.13 E-value=0.039 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++|+|+.|+|||||++.|.|.-
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999987753
No 304
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.062 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+.
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 689999999999999988753
No 305
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.10 E-value=0.037 Score=48.60 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+++-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
No 306
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.04 E-value=0.052 Score=48.97 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+++.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999875
No 307
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.01 E-value=0.038 Score=50.15 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+++.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 589999999999999999874
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.99 E-value=0.042 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCccc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
++.|.|+.||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987654
No 309
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.98 E-value=0.039 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+.+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999998643
No 310
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.98 E-value=0.043 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|+.|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999954
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.93 E-value=0.045 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.3
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++.++.|.|+.||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999743
No 312
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.93 E-value=0.039 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999886
No 313
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.92 E-value=0.066 Score=47.87 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.8
Q ss_pred EEEEeCCCCCchhHHHHhHcC
Q 009374 449 LFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g 469 (536)
-++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 368999999999999999983
No 314
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.91 E-value=0.052 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.1
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+|-.+.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999997643
No 315
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.87 E-value=0.046 Score=48.60 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+++-.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 6899999999999999998753
No 316
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.86 E-value=0.042 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999864
No 317
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.82 E-value=0.042 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|+.|+|||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
No 318
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.81 E-value=0.043 Score=48.38 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999753
No 319
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.81 E-value=0.054 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.1
Q ss_pred cEEEEeCCCCCchhHHHHhHcCc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~ 470 (536)
|+++|.|+.||||||+-+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999764
No 320
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.81 E-value=0.054 Score=48.77 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.4
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+||||+++.+++-.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 321
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.80 E-value=0.053 Score=49.89 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.0
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i 478 (536)
..+.|.||+|+||||+++.++.........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 5678999999999999999998776544443
No 322
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.76 E-value=0.045 Score=47.99 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=18.5
Q ss_pred EEEeCCCCCchhHHHHhHcC
Q 009374 450 FCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g 469 (536)
++++|+.|+||||+++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
No 323
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.73 E-value=0.045 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 36899999999999999997643
No 324
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.69 E-value=0.053 Score=52.75 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=22.8
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G 476 (536)
..++++|.+|+||||+++.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 57899999999999999999997654333
No 325
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.69 E-value=0.046 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+||||+++.+.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998654
No 326
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.64 E-value=0.057 Score=52.25 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=22.6
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++.++.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998653
No 327
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.61 E-value=0.047 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++|+.|+||||+++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3689999999999999999865
No 328
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.60 E-value=0.05 Score=49.30 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+|||||++.+++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999865
No 329
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.56 E-value=0.048 Score=48.77 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.2
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+.
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 689999999999999999864
No 330
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.55 E-value=0.058 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999643
No 331
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.55 E-value=0.061 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=18.9
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+++..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999999754
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.52 E-value=0.059 Score=48.88 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 333
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.47 E-value=0.049 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998753
No 334
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.46 E-value=0.05 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+|||||++.+++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998864
No 335
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.43 E-value=0.06 Score=56.38 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=29.9
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
++.++.+.|++|+||||+...|+..+....-++.+-..|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467899999999999999999998776554455443333
No 336
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.41 E-value=0.057 Score=47.90 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+.
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999753
No 337
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.40 E-value=0.033 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+|||||++.|+|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999875
No 338
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.38 E-value=0.056 Score=50.61 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=23.9
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
++..+.|.||+|+||||+.+.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999876543
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.36 E-value=0.069 Score=49.15 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=21.0
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
+-+++|.|+.||||||+.+.|+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999754
No 340
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.36 E-value=0.052 Score=49.59 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.1
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+-
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999764
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.34 E-value=0.065 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.2
Q ss_pred CcEEEEeCCCCCchhHHHHhHcC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g 469 (536)
..+++|.|+.||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998874
No 342
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.34 E-value=0.053 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+||||+++.+.+..
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998753
No 343
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.33 E-value=0.063 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.5
Q ss_pred cEEEEeCCCCCchhHHHHhHcCcc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
..++++|+.|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 467999999999999999999863
No 344
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.30 E-value=0.052 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+||||+++.|++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 345
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.27 E-value=0.055 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+|||||++.|+|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999999865
No 346
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.27 E-value=0.055 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.6
Q ss_pred EEEEeCCCCCchhHHHHhHcC
Q 009374 449 LFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g 469 (536)
-++++|+.|+|||||++.+++
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999988874
No 347
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.25 E-value=0.067 Score=47.89 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999999864
No 348
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.23 E-value=0.064 Score=49.05 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+++..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998754
No 349
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.23 E-value=0.05 Score=49.42 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 3789999999999999999873
No 350
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.23 E-value=0.067 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998753
No 351
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.21 E-value=0.056 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+++..
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998654
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.18 E-value=0.068 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999643
No 353
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.17 E-value=0.071 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999984
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.16 E-value=0.066 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.8
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999753
No 355
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.16 E-value=0.057 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
+..+.|.|+.||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999754
No 356
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.15 E-value=0.063 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999764
No 357
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.10 E-value=0.073 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 358
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.10 E-value=0.072 Score=50.04 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+|||||++.+++..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999863
No 359
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.10 E-value=0.072 Score=49.41 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=19.5
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+++..
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999999643
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.09 E-value=0.06 Score=47.99 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+++|.|+.||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997643
No 361
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.06 E-value=0.062 Score=51.14 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
+.+|-++.+.|+.||||||+.+.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999987664
No 362
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.06 E-value=0.058 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.||||||+++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999975
No 363
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.03 E-value=0.069 Score=48.77 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.9
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|..|+|||||++.+.+-.
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6799999999999999999854
No 364
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.065 Score=48.36 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=25.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc----ccCcc----EEEEcCEe
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT----PVTGG----DALIYGFS 484 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~----~pt~G----~i~i~g~~ 484 (536)
.++++|+.|+||||+++.+++-. .||-| ++.+++..
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 61 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 61 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEE
Confidence 46899999999999999998532 34433 55555543
No 365
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.98 E-value=0.066 Score=49.17 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 689999999999999999864
No 366
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.94 E-value=0.057 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=19.1
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+.
T Consensus 26 i~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999764
No 367
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.92 E-value=0.058 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.3
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.+++..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 36899999999999999998754
No 368
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.91 E-value=0.064 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEeCCCCCchhHHHHhHcC
Q 009374 449 LFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g 469 (536)
-++|+|.+|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999986
No 369
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.91 E-value=0.065 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+||||+++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 370
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.91 E-value=0.065 Score=48.64 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
No 371
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.88 E-value=0.088 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+++.
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999875
No 372
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.74 E-value=0.068 Score=48.33 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.9
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+-
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999753
No 373
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.74 E-value=0.1 Score=47.24 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=22.0
Q ss_pred EEEeCCCCCchhHHHHhHcCc-----cccCccE
Q 009374 450 FCLLGPNGAGKTTTISCLTGI-----TPVTGGD 477 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~-----~~pt~G~ 477 (536)
++++|+.|+|||||++.+.+- ..||-|.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 689999999999999888653 3456553
No 374
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.73 E-value=0.063 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+++..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 5899999999999999998754
No 375
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.73 E-value=0.062 Score=49.34 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999864
No 376
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.72 E-value=0.064 Score=48.19 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=25.5
Q ss_pred EEEeCCCCCchhHHHHhHcCcc----ccCcc----EEEEcCEe
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT----PVTGG----DALIYGFS 484 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~----~pt~G----~i~i~g~~ 484 (536)
++++|+.|+||||+++.+.+-. .||-| ++.++|..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 66 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEE
Confidence 5899999999999999998742 34444 35555543
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.71 E-value=0.084 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
.-++||.|..||||||+-++|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999865
No 378
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.70 E-value=0.07 Score=48.33 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+-
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
No 379
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.69 E-value=0.09 Score=49.42 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=24.8
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
.+|.++.+.|+.||||||..+.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876653
No 380
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.67 E-value=0.071 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+++.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999865
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.62 E-value=0.085 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.+.|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999753
No 382
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.61 E-value=0.071 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999865
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.59 E-value=0.072 Score=48.17 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCchhHHHHhHcCc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~ 470 (536)
.+++|.|+.||||||+-+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998754
No 384
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.58 E-value=0.088 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 385
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.58 E-value=0.073 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.+++..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 36899999999999999998653
No 386
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.57 E-value=0.047 Score=57.15 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=29.4
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
.+++++|++|+||||+...|++.+.....++.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5889999999999999999999887554456554444
No 387
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.53 E-value=0.087 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+||||+++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 388
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.51 E-value=0.086 Score=48.80 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++|+|+.|+|||||++.+++..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 389
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.49 E-value=0.061 Score=53.14 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=19.5
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++-++||-|+.||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998754
No 390
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.43 E-value=0.089 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999764
No 391
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.43 E-value=0.096 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.3
Q ss_pred CcEEEEeCCCCCchhHHHHhHcC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g 469 (536)
+-+++|.|+.||||||+.+.|+.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
No 392
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.35 E-value=0.063 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=8.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.+++..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999998653
No 393
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.35 E-value=0.096 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++|+.|+|||||++.+++-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999864
No 394
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.33 E-value=0.08 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999864
No 395
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.30 E-value=0.082 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998864
No 396
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.30 E-value=0.084 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+++-
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999999874
No 397
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.22 E-value=0.063 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.2
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+++-
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999864
No 398
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.13 E-value=0.095 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.6
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++..+.|.||+|+||||+.+.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35677899999999999999999865
No 399
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.12 E-value=0.084 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999975
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.05 E-value=0.11 Score=49.84 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.8
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
+|.++.+.|+.||||||+.+.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999877654
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.03 E-value=0.1 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.9
Q ss_pred cEEEEeCCCCCchhHHHHhHcCcc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-+++|.|+.||||||+-+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999997643
No 402
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.02 E-value=0.08 Score=48.79 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 403
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.90 E-value=0.088 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+||||+++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 404
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.89 E-value=0.11 Score=48.82 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.7
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
+|.++.+-|+.||||||..+.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999887654
No 405
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.88 E-value=0.063 Score=60.47 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=27.0
Q ss_pred EecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (536)
Q Consensus 444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~ 475 (536)
+..|+.+.+.|||||||||++.++.+...+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 56789999999999999999999877655544
No 406
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.83 E-value=0.11 Score=47.93 Aligned_cols=29 Identities=24% Similarity=0.121 Sum_probs=21.4
Q ss_pred EEEEeCCCCCchhHHHHhHcC-----ccccCccE
Q 009374 449 LFCLLGPNGAGKTTTISCLTG-----ITPVTGGD 477 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g-----~~~pt~G~ 477 (536)
.++++|+.|+||||+++.+++ ...|+.|.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~ 65 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD 65 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc
Confidence 368999999999999977663 34455554
No 407
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.81 E-value=0.11 Score=49.05 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=26.0
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
.+|..+.+.|+.||||||..+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999987765
No 408
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.76 E-value=0.059 Score=54.46 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=38.4
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~ 481 (536)
..||.+.-.+++|+++.|.|++|+||||+...++.......+.|.+-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 57888887899999999999999999999988877655445555443
No 409
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.75 E-value=0.1 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|++|+|||||++.|+|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999854
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.74 E-value=0.11 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
|-.+.|.|+.||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999754
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.61 E-value=0.11 Score=48.30 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=18.7
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++|.|+.||||||+.+.|+-.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999753
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.56 E-value=0.11 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred CcEEEEeCCCCCchhHHHHhHcC
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g 469 (536)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 413
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.52 E-value=0.12 Score=47.46 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+||||+++.+++-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999874
No 414
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.51 E-value=0.061 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=3.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999998876
No 415
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.48 E-value=0.097 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+||||+++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999864
No 416
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.48 E-value=0.12 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++|+|..|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 417
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.26 E-value=0.092 Score=52.28 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.9
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccccC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITPVT 474 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~pt 474 (536)
..+.|.||+|+||||+++.+++.....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 456789999999999999999877544
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.18 E-value=0.16 Score=51.15 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=23.5
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
++.++.|+||.|+||||+-..|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998763
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.18 E-value=0.11 Score=48.34 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+||||+++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999988764
No 420
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.17 E-value=0.13 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.6
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.-+++|+|+.|+||||+++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999987654
No 421
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.16 E-value=0.048 Score=50.76 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=26.6
Q ss_pred eeeceeEEEecCc---EEEEeCCCCCchhHHHHhHcCccc
Q 009374 436 AIKGLWVNIAKDQ---LFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 436 al~~lsl~v~~ge---i~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
+++.+.-.+..|+ .+.|.||.|+||||+++.++....
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3333333344454 789999999999999999986553
No 422
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.16 E-value=0.21 Score=46.44 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=27.5
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
..+++.-+.+ .|..+.|.||+|+|||||...|+..
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566655554 5788999999999999998888654
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.16 E-value=0.15 Score=48.15 Aligned_cols=26 Identities=42% Similarity=0.438 Sum_probs=21.7
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++..+.|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999997543
No 424
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.06 E-value=0.16 Score=48.15 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.9
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
.+|.++.+-|+.||||||+.+.|...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35788999999999999999999876654
No 425
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.00 E-value=0.082 Score=52.78 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=31.9
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
..||++.-.+++|+++.|.|++|+||||+...++..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 578888878999999999999999999998877644
No 426
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.95 E-value=0.12 Score=48.14 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.+++..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 427
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.93 E-value=0.05 Score=61.61 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=36.4
Q ss_pred ceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
..++.+.+++.+.|.||+|+||||+.+++++... .+-+.+++.++
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 3466788999999999999999999999999874 34566666554
No 428
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.89 E-value=0.17 Score=45.06 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.0
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
+..+.|.|+.|+||||+.+.++....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999987653
No 429
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.86 E-value=0.12 Score=47.53 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEeCCCCCchhHHHHhHcCc
Q 009374 450 FCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~ 470 (536)
++++|+.|+|||||++.+.+.
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 689999999999999999764
No 430
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.85 E-value=0.14 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
+.+++|.|+.||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999998764
No 431
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.77 E-value=0.054 Score=54.28 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=27.8
Q ss_pred eeeceeEEEecC--cEEEEeCCCCCchhHHHHhHcCccc
Q 009374 436 AIKGLWVNIAKD--QLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 436 al~~lsl~v~~g--ei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
+++.+.-.+..| ..+.|.||+|+||||+.+.+++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444444445555 3488999999999999999998764
No 432
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.76 E-value=0.17 Score=52.58 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=26.6
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~ 483 (536)
.+.+++.|.|++||||||+.+.|+..+ |-..++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D 290 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRD 290 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccc
Confidence 456789999999999999999987643 44444443
No 433
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.73 E-value=0.18 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.0
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
-.++++|.+|+||||++|.|+|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3579999999999999999998753
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.73 E-value=0.15 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred cEEEEeCCCCCchhHHHHhHcC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g 469 (536)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999985
No 435
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.70 E-value=0.16 Score=51.72 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=35.9
Q ss_pred ceeecee--EEEecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCE
Q 009374 435 HAIKGLW--VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGF 483 (536)
Q Consensus 435 ~al~~ls--l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~ 483 (536)
..||.+- =.+++|+++.|.|++|+||||+...++...... ...++++..
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3566652 259999999999999999999988777654333 335667664
No 436
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.56 E-value=0.071 Score=48.76 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++++|+.|+|||||++.+++..
T Consensus 36 i~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998854
No 437
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.56 E-value=0.15 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.4
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 466789999999999999999998766
No 438
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.56 E-value=0.14 Score=48.33 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=21.6
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
++..++.|+||.||||+|.-+.|+-.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44568889999999999999888743
No 439
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.46 E-value=0.17 Score=46.24 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.0
Q ss_pred cCcEEEEeCCCCCchhHHH-HhH
Q 009374 446 KDQLFCLLGPNGAGKTTTI-SCL 467 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll-~~l 467 (536)
+|.+..+.|+.|+||||++ +++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999997 554
No 440
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.43 E-value=0.16 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999754
No 441
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.42 E-value=0.18 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.6
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+.++.|.||+|+||||+...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 442
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=89.35 E-value=0.15 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.2
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++|+|..++|||||++.|+|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 6899999999999999999864
No 443
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.31 E-value=0.17 Score=47.98 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.3
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+|.++++-|..||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999998655
No 444
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.29 E-value=0.17 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.0
Q ss_pred cEEEEeCCCCCchhHHHHhHcCccc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.+++|.||+||||||+-+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4789999999999999999987654
No 445
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.20 E-value=0.19 Score=49.96 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=27.8
Q ss_pred eeecee-EEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 436 al~~ls-l~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
.||.+- =.+++|+++.|.|++|+||||+...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 3689999999999999999999987774
No 446
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.16 E-value=0.16 Score=47.27 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=22.3
Q ss_pred EEEeCCCCCchhHHHHhHcCcc-----ccCccE
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT-----PVTGGD 477 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~-----~pt~G~ 477 (536)
++++|..|+|||||++.+++-. .||-|.
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~ 62 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE 62 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCcCCeeee
Confidence 6799999999999999987642 455554
No 447
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=88.81 E-value=0.24 Score=50.08 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=33.2
Q ss_pred eceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc-----------ccCccEEEEcC
Q 009374 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----------PVTGGDALIYG 482 (536)
Q Consensus 438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~-----------~pt~G~i~i~g 482 (536)
+.+.++++----++|+|..+||||||++.|++-. .|+-|.+.+++
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~ 204 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD 204 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC
Confidence 4555666555568999999999999999999753 34556666654
No 448
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.66 E-value=0.19 Score=48.71 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=23.6
Q ss_pred ecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 445 AKDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 445 ~~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.++..+.|.||.|+||||+.+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456688999999999999999988753
No 449
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=88.42 E-value=0.22 Score=51.42 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++|+.|+|||||++.|+|.
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4689999999999999999984
No 450
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.40 E-value=0.35 Score=43.88 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=25.3
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g 469 (536)
..++..-+. -.|.-+.+.|++|+||||+...|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345555544 4578899999999999998776643
No 451
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.32 E-value=0.22 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred cEEEEeCCCCCchhHHHHhHcCcc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++.|.||+||||||+-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999998765
No 452
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.25 E-value=0.21 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|+.|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 453
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=88.17 E-value=0.2 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|..|+||||+++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
No 454
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.16 E-value=0.18 Score=52.88 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.0
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
+..+.|.||+|+|||||++++++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999998763
No 455
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.03 E-value=0.21 Score=44.42 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
+..+.|.||.|+||||+.+.++.....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999999876643
No 456
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.00 E-value=0.16 Score=47.21 Aligned_cols=27 Identities=44% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEeCCCCCchhHHHHh-HcCc----cccCcc
Q 009374 450 FCLLGPNGAGKTTTISC-LTGI----TPVTGG 476 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~-l~g~----~~pt~G 476 (536)
++++|+.|+|||||++. +.|. ..|+.|
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~ 49 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 68999999999999998 5554 345555
No 457
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.79 E-value=0.097 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++++|+.|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 3689999999999999888753
No 458
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.60 E-value=0.28 Score=46.69 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.2
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
...+.|.||.|+||||+.+.++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999998754
No 459
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.57 E-value=0.29 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.1
Q ss_pred cEEEEeCCCCCchhHHHHhHcCcc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++.|.||+|+||||+...|+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 478999999999999999998654
No 460
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.46 E-value=0.29 Score=45.54 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.3
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
|..+++=|.-||||||..+.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45678889999999999999988664
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.43 E-value=0.29 Score=45.68 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=18.8
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
++.|+||.||||+|.-+.|+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999998888754
No 462
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=87.07 E-value=0.31 Score=49.93 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=29.7
Q ss_pred EEEEeCCCCCchhHHHHhHcCccc-----------cCccEEEEcCEec
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITP-----------VTGGDALIYGFSI 485 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~-----------pt~G~i~i~g~~i 485 (536)
-+||+|..-+|||||+|.|+|--. |..|.+.+.|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 489999999999999999999642 3457778877653
No 463
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.03 E-value=0.37 Score=45.30 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=25.9
Q ss_pred eeeceeE-EEecCcEEEEeCCCCCchhHHHHhHc
Q 009374 436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLT 468 (536)
Q Consensus 436 al~~lsl-~v~~gei~~LlG~NGaGKSTll~~l~ 468 (536)
.||.+-= .+++|+++.|-|+.|+||||+.--++
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4555432 69999999999999999999975443
No 464
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=86.99 E-value=0.34 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
-++|+|..|+||||+++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999997765
No 465
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=86.87 E-value=0.24 Score=50.55 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.8
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
++..++++|..|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667899999999999999999987
No 466
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.82 E-value=0.3 Score=52.02 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=21.3
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+..+++++|++|+|||||.+.|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999544
No 467
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.77 E-value=0.3 Score=46.44 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.7
Q ss_pred EEEEeCCCCCchhHHHHhHcC
Q 009374 449 LFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g 469 (536)
-+||+|+.||||||.-+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 479999999999999998854
No 468
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=86.63 E-value=0.22 Score=52.46 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.2
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
|=.++|+|+.|+|||||++.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 344899999999999999999885
No 469
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.61 E-value=0.25 Score=49.78 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=28.4
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCcccc-------CccEEEEcCE
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPV-------TGGDALIYGF 483 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~p-------t~G~i~i~g~ 483 (536)
.+..+.|.||.|+||||+++.+...... ...-++++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 3467889999999999999999987643 2334566654
No 470
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.60 E-value=0.18 Score=50.45 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=42.2
Q ss_pred EEecCcEEEEeCCCCCchhHH-HHhHcCcccc--CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH-HH
Q 009374 443 NIAKDQLFCLLGPNGAGKTTT-ISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH-LH 518 (536)
Q Consensus 443 ~v~~gei~~LlG~NGaGKSTl-l~~l~g~~~p--t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~-L~ 518 (536)
.+++| ++-|-||.|+||||| +.+++...+. ..--++|++..-. +... .+++|+-+++-.+...-++++- +.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~---~~~r-a~~lGvd~d~llv~~~~~~E~~~l~ 99 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI---TPAY-LRSMGVDPERVIHTPVQSLEQLRID 99 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC---CHHH-HHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh---hHHH-HHHhCCCHHHeEEEcCCCHHHHHHH
Confidence 47889 899999999999999 4555444432 2234677775431 1122 2345554443333334456554 55
Q ss_pred HHH
Q 009374 519 LFA 521 (536)
Q Consensus 519 ~~~ 521 (536)
...
T Consensus 100 i~~ 102 (333)
T 3io5_A 100 MVN 102 (333)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 471
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=86.50 E-value=0.28 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.6
Q ss_pred cEEEEeCCCCCchhHHHHhHcCcc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-.++++|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999864
No 472
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.37 E-value=0.1 Score=50.18 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+.|.||.|+||||+.+.++...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5688999999999999998753
No 473
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=86.08 E-value=0.35 Score=49.93 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++||.++|||||++.|+|.
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g~ 33 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTGV 33 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999975
No 474
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=85.93 E-value=0.26 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.9
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
++..++++|..|+||||++|.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5677899999999999999999986
No 475
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=85.78 E-value=0.35 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.8
Q ss_pred cEEEEeCCCCCchhHHHHhHcCcc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-+++++|+.|+|||||+|.|+|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 568999999999999999999964
No 476
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.64 E-value=0.21 Score=52.27 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=33.8
Q ss_pred ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (536)
Q Consensus 435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p 473 (536)
..||.+.-.+++|+++.|.|++|+||||+...++.....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 578888877999999999999999999998888876544
No 477
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=85.61 E-value=0.36 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=20.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
-++++|+.|+|||||++.++|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 478
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=85.32 E-value=0.39 Score=50.51 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=29.3
Q ss_pred eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++|. =+.+-+||..+|.|+.|.|||||+.+++.-.
T Consensus 143 ~ID~-l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 143 VVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp HHHH-HSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEec-ccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 4443 3678999999999999999999999887754
No 479
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=85.25 E-value=0.36 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|+.|+|||||++.+++-.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC
T ss_pred eEEEECCCCccHHHHHHHHhCCC
Confidence 47899999999999999998753
No 480
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.01 E-value=0.46 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.1
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
.-++.+.|.-|+||||+++.|+..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35778999999999999999986554
No 481
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=84.96 E-value=0.37 Score=52.23 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=27.9
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i 480 (536)
.+.++.|.|+.|+||||+++.+..........|.+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 46899999999999999999998876544444544
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.96 E-value=0.41 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.9
Q ss_pred cEEEEeCCCCCchhHHHHhHcCcc
Q 009374 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.+++|.||+|+||||+...|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 468899999999999999988654
No 483
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=84.87 E-value=0.35 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++|+|+.|+|||||++.|+|..
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999873
No 484
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=84.80 E-value=0.36 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++|+.|+|||||++.|++.
T Consensus 13 ~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 13 NVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHhh
Confidence 4799999999999999999873
No 485
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=84.60 E-value=0.46 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.++|||||++.|+|..
T Consensus 10 ~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 10 NIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp EEEEESCTTSSHHHHHHHHHSCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999753
No 486
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=84.57 E-value=0.42 Score=51.21 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
++|+|..|+|||||++.++|-.
T Consensus 44 V~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 44 VHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEESSSCSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999999864
No 487
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=84.51 E-value=0.45 Score=48.81 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=29.1
Q ss_pred ceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
|.=+.+-+||-.+|+|+.|+||||++.+|+.-..
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 3446789999999999999999999998887543
No 488
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.48 E-value=0.41 Score=41.53 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=27.2
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i 485 (536)
+.-+-|.|+.|+|||++.+.|........+...++...+
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~ 62 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCC
Confidence 344679999999999999999887644333322544433
No 489
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=84.17 E-value=0.4 Score=49.31 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++|+.|+|||||++.|++.
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhCh
Confidence 4799999999999999999884
No 490
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=83.92 E-value=0.26 Score=52.18 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=29.1
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc------------cCccEEEEcCEe
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFS 484 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~------------pt~G~i~i~g~~ 484 (536)
|=.++|+|+.|+|||||++.|+|... +..+.+.++|.+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE
Confidence 33579999999999999999998632 224667777764
No 491
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.89 E-value=0.5 Score=43.02 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEeCCCCCchhHHHHhHcCcc
Q 009374 450 FCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 450 ~~LlG~NGaGKSTll~~l~g~~ 471 (536)
+.|.||.|+||||+.+.++...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999988654
No 492
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.73 E-value=0.59 Score=46.99 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=30.0
Q ss_pred cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (536)
Q Consensus 446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~ 484 (536)
+|..+-|.||.|+||||+.+.++.........+.+++..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 456788999999999999999998876544555555433
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.70 E-value=0.34 Score=50.81 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=24.5
Q ss_pred EecCcE--EEEeCCCCCchhHHHHhHcCccccC
Q 009374 444 IAKDQL--FCLLGPNGAGKTTTISCLTGITPVT 474 (536)
Q Consensus 444 v~~gei--~~LlG~NGaGKSTll~~l~g~~~pt 474 (536)
+..|++ +.|.||.|+||||+.+.|+......
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 334443 7899999999999999999876543
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.43 E-value=0.6 Score=46.25 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.2
Q ss_pred CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (536)
Q Consensus 447 gei~~LlG~NGaGKSTll~~l~g~~~ 472 (536)
++-+.|.||.|+|||+|+++++....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57888999999999999999988665
No 495
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.22 E-value=0.53 Score=47.99 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=33.1
Q ss_pred ceeeceeE--EEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcC
Q 009374 435 HAIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYG 482 (536)
Q Consensus 435 ~al~~lsl--~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g 482 (536)
..||.+-= .+++|+++.|.|+.|+||||+...++.......+ -++++.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 35555432 6899999999999999999998766654332233 345544
No 496
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=83.22 E-value=0.44 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.9
Q ss_pred cEEEEeCCCCCchhHHHHhHcC
Q 009374 448 QLFCLLGPNGAGKTTTISCLTG 469 (536)
Q Consensus 448 ei~~LlG~NGaGKSTll~~l~g 469 (536)
-.++++|+.|+|||||++.|++
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 4679999999999999999975
No 497
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=83.22 E-value=0.53 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEeCCCCCchhHHHHhHcCcc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGIT 471 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~ 471 (536)
.++++|+.|+||||+++.|+|..
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 498
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=83.15 E-value=0.57 Score=48.86 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=26.2
Q ss_pred EEEEeCCCCCchhHHHHhHcCccc----c--------CccEEEEcCEe
Q 009374 449 LFCLLGPNGAGKTTTISCLTGITP----V--------TGGDALIYGFS 484 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~~~----p--------t~G~i~i~g~~ 484 (536)
.++|+|..++|||||++.|+|-.. + ..|.+.++|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~ 50 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 50 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence 478999999999999999998632 1 23566777764
No 499
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=83.14 E-value=0.49 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHhHcCc
Q 009374 449 LFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 449 i~~LlG~NGaGKSTll~~l~g~ 470 (536)
.++++||.|+|||||++.|.|.
T Consensus 7 ~V~IvGh~d~GKTTLl~~L~~~ 28 (594)
T 1g7s_A 7 IVSVLGHVDHGKTTLLDHIRGS 28 (594)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 6899999999999999999864
No 500
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=83.04 E-value=0.72 Score=46.10 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=27.7
Q ss_pred eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (536)
Q Consensus 437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~ 470 (536)
+|.+--.+++|.++.|.||.|+||||+...++..
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4443357899999999999999999999988753
Done!