Query 009375
Match_columns 536
No_of_seqs 367 out of 2544
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_A HBS1, elongation factor 100.0 1.5E-43 5.2E-48 392.8 16.9 270 262-534 173-443 (592)
2 3j2k_7 ERF3, eukaryotic polype 100.0 1.2E-41 4.1E-46 365.3 28.5 267 262-534 13-282 (439)
3 3p26_A Elongation factor 1 alp 100.0 2.9E-40 1E-44 358.4 20.3 270 263-534 30-309 (483)
4 1f60_A Elongation factor EEF1A 100.0 2.2E-39 7.6E-44 349.4 22.1 265 264-533 5-282 (458)
5 3izq_1 HBS1P, elongation facto 100.0 9.7E-40 3.3E-44 363.5 19.7 270 263-534 164-443 (611)
6 1jny_A EF-1-alpha, elongation 100.0 2.9E-39 9.9E-44 346.3 20.9 266 264-534 4-272 (435)
7 1r5b_A Eukaryotic peptide chai 100.0 2E-39 6.9E-44 350.6 15.6 267 264-534 41-311 (467)
8 1zun_B Sulfate adenylate trans 100.0 2.2E-37 7.7E-42 331.4 22.0 259 264-534 22-283 (434)
9 1d2e_A Elongation factor TU (E 100.0 2E-34 7E-39 305.1 23.6 237 265-533 2-242 (397)
10 2c78_A Elongation factor TU-A; 100.0 3.8E-33 1.3E-37 295.9 20.4 246 263-533 8-259 (405)
11 3avx_A Elongation factor TS, e 100.0 2.5E-31 8.4E-36 307.7 20.4 239 262-533 292-533 (1289)
12 1kk1_A EIF2gamma; initiation o 100.0 1.5E-30 5.1E-35 276.4 22.6 215 264-533 8-255 (410)
13 1s0u_A EIF-2-gamma, translatio 100.0 1.5E-30 5.1E-35 276.3 20.3 215 264-533 6-253 (408)
14 1wb1_A Translation elongation 100.0 3E-31 1E-35 287.7 11.9 220 262-534 15-239 (482)
15 3sjy_A Translation initiation 100.0 3.3E-29 1.1E-33 265.6 20.3 228 263-533 5-247 (403)
16 2elf_A Protein translation elo 100.0 1.2E-29 4.3E-34 266.4 14.6 198 268-534 23-232 (370)
17 3cb4_D GTP-binding protein LEP 100.0 2.7E-28 9.3E-33 270.3 22.3 222 265-535 3-231 (599)
18 2ywe_A GTP-binding protein LEP 100.0 1.3E-28 4.5E-33 272.5 19.5 222 264-534 4-232 (600)
19 3vqt_A RF-3, peptide chain rel 100.0 7.9E-29 2.7E-33 272.5 17.2 238 262-533 27-354 (548)
20 3j25_A Tetracycline resistance 99.9 4.2E-29 1.4E-33 279.4 2.3 231 265-533 1-286 (638)
21 4fn5_A EF-G 1, elongation fact 99.9 1.3E-26 4.4E-31 262.3 17.3 232 264-533 11-358 (709)
22 1zo1_I IF2, translation initia 99.9 1.8E-27 6.2E-32 258.4 7.1 205 264-531 2-214 (501)
23 1g7s_A Translation initiation 99.9 4E-26 1.4E-30 253.0 17.6 214 264-533 3-270 (594)
24 3tr5_A RF-3, peptide chain rel 99.9 7.9E-26 2.7E-30 247.6 19.5 237 264-534 11-337 (528)
25 3izy_P Translation initiation 99.9 3.9E-27 1.3E-31 257.7 2.0 204 265-530 3-214 (537)
26 2h5e_A Peptide chain release f 99.9 4.8E-25 1.7E-29 241.5 18.5 234 264-534 11-338 (529)
27 2rdo_7 EF-G, elongation factor 99.9 1.9E-24 6.5E-29 244.1 23.3 230 264-534 8-356 (704)
28 1dar_A EF-G, elongation factor 99.9 2E-24 6.9E-29 243.5 22.9 230 263-533 9-347 (691)
29 2xex_A Elongation factor G; GT 99.9 1.2E-23 4E-28 237.4 20.1 228 264-532 8-346 (693)
30 2dy1_A Elongation factor G; tr 99.9 8.6E-24 3E-28 237.5 17.4 226 264-531 7-320 (665)
31 1n0u_A EF-2, elongation factor 99.9 1.5E-22 5.1E-27 232.8 18.7 171 264-458 17-219 (842)
32 2lkc_A Translation initiation 99.8 7.9E-21 2.7E-25 175.0 5.8 151 264-461 6-160 (178)
33 4dhe_A Probable GTP-binding pr 99.8 1.5E-19 5.2E-24 173.5 13.7 156 264-461 27-200 (223)
34 1r2q_A RAS-related protein RAB 99.8 4.1E-19 1.4E-23 161.5 15.6 152 264-461 4-158 (170)
35 2oil_A CATX-8, RAS-related pro 99.8 3E-19 1E-23 167.6 15.0 166 250-461 9-177 (193)
36 2ew1_A RAS-related protein RAB 99.8 3.9E-19 1.3E-23 170.0 15.9 169 247-461 7-178 (201)
37 2y8e_A RAB-protein 6, GH09086P 99.8 4.4E-19 1.5E-23 162.9 15.5 153 263-461 11-166 (179)
38 2fg5_A RAB-22B, RAS-related pr 99.8 7.3E-19 2.5E-23 165.5 16.4 152 264-461 21-175 (192)
39 2efe_B Small GTP-binding prote 99.8 6E-19 2.1E-23 162.8 15.5 153 263-461 9-164 (181)
40 3tw8_B RAS-related protein RAB 99.8 6.4E-19 2.2E-23 162.1 15.4 153 263-461 6-160 (181)
41 2hxs_A RAB-26, RAS-related pro 99.8 5.7E-19 2E-23 162.5 14.7 152 263-461 3-162 (178)
42 1kao_A RAP2A; GTP-binding prot 99.8 3.3E-19 1.1E-23 161.3 12.7 155 264-461 1-155 (167)
43 1ek0_A Protein (GTP-binding pr 99.8 4.6E-19 1.6E-23 161.1 13.5 154 265-461 2-158 (170)
44 1z0j_A RAB-22, RAS-related pro 99.8 1.1E-18 3.6E-23 159.0 15.7 153 264-461 4-158 (170)
45 3clv_A RAB5 protein, putative; 99.8 9.6E-19 3.3E-23 163.3 15.7 100 344-461 93-193 (208)
46 1c1y_A RAS-related protein RAP 99.8 5.6E-19 1.9E-23 160.4 13.4 156 264-461 1-156 (167)
47 3tkl_A RAS-related protein RAB 99.8 9.8E-19 3.4E-23 163.7 15.4 153 263-461 13-168 (196)
48 2a5j_A RAS-related protein RAB 99.8 7.8E-19 2.7E-23 164.9 14.7 164 252-461 7-173 (191)
49 1u8z_A RAS-related protein RAL 99.8 6.9E-19 2.4E-23 159.4 13.8 152 264-461 2-156 (168)
50 2h57_A ADP-ribosylation factor 99.8 3.8E-19 1.3E-23 166.7 12.5 155 262-461 17-176 (190)
51 1wf3_A GTP-binding protein; GT 99.8 6.8E-19 2.3E-23 179.7 14.9 148 264-461 5-162 (301)
52 2gf9_A RAS-related protein RAB 99.8 1.4E-18 4.9E-23 162.6 15.9 153 263-461 19-174 (189)
53 1upt_A ARL1, ADP-ribosylation 99.8 1.5E-18 5.1E-23 158.4 15.3 151 264-461 5-158 (171)
54 2nzj_A GTP-binding protein REM 99.8 1.2E-18 4.1E-23 159.7 14.8 151 264-461 2-158 (175)
55 1z0f_A RAB14, member RAS oncog 99.8 1.2E-18 4.1E-23 160.0 14.7 152 264-461 13-167 (179)
56 1z08_A RAS-related protein RAB 99.8 1.7E-18 5.8E-23 157.9 15.3 152 264-461 4-158 (170)
57 3iev_A GTP-binding protein ERA 99.8 8.9E-19 3E-23 179.1 14.8 152 264-461 8-171 (308)
58 2g6b_A RAS-related protein RAB 99.8 1.9E-18 6.4E-23 159.4 15.5 154 263-461 7-163 (180)
59 2hjg_A GTP-binding protein ENG 99.8 3.3E-19 1.1E-23 190.6 11.9 155 265-462 174-339 (436)
60 2o52_A RAS-related protein RAB 99.8 7.4E-19 2.5E-23 166.9 13.0 166 250-461 9-177 (200)
61 4bas_A ADP-ribosylation factor 99.8 1.8E-18 6.2E-23 162.3 15.4 157 261-461 12-178 (199)
62 2dyk_A GTP-binding protein; GT 99.8 7.1E-19 2.4E-23 159.0 11.9 143 267-461 2-151 (161)
63 1zbd_A Rabphilin-3A; G protein 99.8 3.3E-18 1.1E-22 161.7 16.9 152 264-461 6-160 (203)
64 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.1E-18 3.7E-23 160.5 13.1 157 263-461 4-163 (177)
65 3i8s_A Ferrous iron transport 99.8 6.6E-19 2.3E-23 177.1 12.5 146 264-461 1-158 (274)
66 3bc1_A RAS-related protein RAB 99.8 3.5E-18 1.2E-22 158.8 16.5 153 263-461 8-174 (195)
67 2fu5_C RAS-related protein RAB 99.8 1.3E-18 4.3E-23 161.5 13.3 152 264-461 6-160 (183)
68 1z2a_A RAS-related protein RAB 99.8 2.3E-18 7.7E-23 156.5 14.6 151 265-461 4-156 (168)
69 3kkq_A RAS-related protein M-R 99.8 2E-18 6.8E-23 160.1 14.5 157 262-461 14-171 (183)
70 3pqc_A Probable GTP-binding pr 99.8 2E-18 6.8E-23 161.0 14.6 150 264-461 21-183 (195)
71 3t5g_A GTP-binding protein RHE 99.8 9.9E-19 3.4E-23 161.9 12.4 155 264-461 4-158 (181)
72 1zd9_A ADP-ribosylation factor 99.8 1.7E-18 5.7E-23 162.5 14.1 153 263-461 19-174 (188)
73 2hup_A RAS-related protein RAB 99.8 2.2E-18 7.4E-23 164.0 14.9 161 254-461 17-182 (201)
74 2a9k_A RAS-related protein RAL 99.8 1.7E-18 5.8E-23 160.1 13.6 153 263-461 15-170 (187)
75 2h17_A ADP-ribosylation factor 99.8 1E-18 3.4E-23 162.8 12.1 156 259-461 14-172 (181)
76 4dcu_A GTP-binding protein ENG 99.8 6.9E-19 2.4E-23 189.2 12.4 156 264-462 193-359 (456)
77 1x3s_A RAS-related protein RAB 99.8 1.9E-18 6.4E-23 161.4 13.7 153 262-461 11-167 (195)
78 2bme_A RAB4A, RAS-related prot 99.8 5E-18 1.7E-22 157.6 16.5 150 264-461 8-162 (186)
79 1zj6_A ADP-ribosylation factor 99.8 6.7E-19 2.3E-23 164.6 10.6 151 264-461 14-167 (187)
80 1mh1_A RAC1; GTP-binding, GTPa 99.8 3.6E-18 1.2E-22 158.0 15.5 156 264-461 3-169 (186)
81 2fn4_A P23, RAS-related protei 99.8 2.3E-18 7.9E-23 158.3 14.0 153 263-461 6-161 (181)
82 2erx_A GTP-binding protein DI- 99.8 4.1E-18 1.4E-22 155.1 15.4 158 265-484 2-164 (172)
83 1z06_A RAS-related protein RAB 99.8 1.3E-18 4.5E-23 162.9 12.3 159 261-461 15-177 (189)
84 2p5s_A RAS and EF-hand domain 99.8 6.8E-19 2.3E-23 166.6 10.3 158 262-461 24-186 (199)
85 2bov_A RAla, RAS-related prote 99.8 5.1E-18 1.8E-22 160.1 16.4 153 263-461 11-166 (206)
86 4dsu_A GTPase KRAS, isoform 2B 99.8 1.7E-18 5.8E-23 160.6 12.9 150 264-461 2-155 (189)
87 1r8s_A ADP-ribosylation factor 99.8 2.7E-18 9.3E-23 155.9 13.8 148 267-461 1-151 (164)
88 3dz8_A RAS-related protein RAB 99.8 8.8E-19 3E-23 164.6 10.8 153 263-461 20-175 (191)
89 2ce2_X GTPase HRAS; signaling 99.8 5.9E-18 2E-22 152.6 15.9 150 264-461 1-154 (166)
90 1g16_A RAS-related protein SEC 99.8 2.1E-18 7E-23 157.1 12.9 150 265-461 2-154 (170)
91 2il1_A RAB12; G-protein, GDP, 99.8 2.4E-18 8.2E-23 162.1 13.6 154 263-461 23-179 (192)
92 3q72_A GTP-binding protein RAD 99.8 3.6E-18 1.2E-22 155.4 14.1 148 266-461 2-153 (166)
93 1ksh_A ARF-like protein 2; sma 99.8 2.7E-18 9.1E-23 159.9 13.6 151 264-461 16-169 (186)
94 1svi_A GTP-binding protein YSX 99.8 3.2E-18 1.1E-22 160.3 13.9 151 264-461 21-184 (195)
95 3t1o_A Gliding protein MGLA; G 99.8 1.5E-18 5.1E-23 161.9 11.4 165 263-461 11-181 (198)
96 3iby_A Ferrous iron transport 99.8 1.1E-18 3.7E-23 174.1 11.1 151 267-484 2-164 (256)
97 1fzq_A ADP-ribosylation factor 99.8 4.4E-18 1.5E-22 159.0 14.5 151 264-461 14-167 (181)
98 2bcg_Y Protein YP2, GTP-bindin 99.8 4.8E-18 1.6E-22 161.2 14.8 152 264-461 6-160 (206)
99 3reg_A RHO-like small GTPase; 99.8 2.4E-18 8.3E-23 161.7 12.4 156 263-461 20-177 (194)
100 2fh5_B SR-beta, signal recogni 99.8 5.4E-18 1.8E-22 161.8 15.0 158 264-461 5-205 (214)
101 2wji_A Ferrous iron transport 99.8 1.7E-18 5.9E-23 159.2 11.1 146 264-461 1-154 (165)
102 1vg8_A RAS-related protein RAB 99.8 4.9E-18 1.7E-22 160.6 14.5 154 263-461 5-164 (207)
103 3cph_A RAS-related protein SEC 99.8 4.5E-18 1.5E-22 161.6 13.9 149 264-461 18-171 (213)
104 3a1s_A Iron(II) transport prot 99.8 2.5E-18 8.7E-23 171.5 12.4 146 264-461 3-156 (258)
105 2f7s_A C25KG, RAS-related prot 99.8 7.5E-18 2.6E-22 161.1 15.1 152 262-461 21-188 (217)
106 1ky3_A GTP-binding protein YPT 99.8 1.6E-18 5.5E-23 159.5 9.9 155 263-461 5-167 (182)
107 3llu_A RAS-related GTP-binding 99.8 5.4E-18 1.9E-22 160.2 13.7 161 262-461 16-186 (196)
108 3k53_A Ferrous iron transport 99.8 2.3E-18 7.8E-23 172.3 11.6 146 264-461 1-155 (271)
109 1moz_A ARL1, ADP-ribosylation 99.8 2.9E-18 9.8E-23 158.8 11.5 151 264-461 16-169 (183)
110 4dkx_A RAS-related protein RAB 99.8 7E-18 2.4E-22 164.1 14.7 154 263-461 10-165 (216)
111 3gj0_A GTP-binding nuclear pro 99.8 3.4E-18 1.2E-22 164.4 12.2 154 261-461 10-164 (221)
112 2b6h_A ADP-ribosylation factor 99.8 7E-18 2.4E-22 159.3 14.0 152 263-461 26-180 (192)
113 4gzl_A RAS-related C3 botulinu 99.8 1.1E-17 3.8E-22 159.5 15.4 157 263-461 27-194 (204)
114 3oes_A GTPase rhebl1; small GT 99.8 2.9E-18 1E-22 162.5 11.3 156 263-461 21-176 (201)
115 1m2o_B GTP-binding protein SAR 99.8 4.9E-18 1.7E-22 160.1 12.7 151 264-461 21-181 (190)
116 4djt_A GTP-binding nuclear pro 99.7 7.8E-18 2.7E-22 161.1 13.9 153 263-461 8-164 (218)
117 3con_A GTPase NRAS; structural 99.7 9.6E-18 3.3E-22 156.6 13.9 153 261-461 16-172 (190)
118 2x77_A ADP-ribosylation factor 99.7 4.1E-18 1.4E-22 159.3 11.2 151 264-461 20-173 (189)
119 3q85_A GTP-binding protein REM 99.7 1.1E-17 3.7E-22 152.6 13.6 151 266-461 2-156 (169)
120 3cpj_B GTP-binding protein YPT 99.7 8.5E-18 2.9E-22 162.3 13.5 152 264-461 11-165 (223)
121 2atx_A Small GTP binding prote 99.7 2.1E-17 7.2E-22 155.1 15.6 156 264-461 16-182 (194)
122 1f6b_A SAR1; gtpases, N-termin 99.7 4.2E-18 1.5E-22 161.8 10.9 151 264-461 23-188 (198)
123 2wjg_A FEOB, ferrous iron tran 99.7 7.3E-18 2.5E-22 156.9 12.2 146 264-461 5-158 (188)
124 2j1l_A RHO-related GTP-binding 99.7 1.6E-17 5.5E-22 159.5 14.8 157 263-461 31-198 (214)
125 2gf0_A GTP-binding protein DI- 99.7 1.8E-17 6.1E-22 155.5 14.4 150 264-461 6-160 (199)
126 2fv8_A H6, RHO-related GTP-bin 99.7 3.2E-17 1.1E-21 156.2 16.3 157 263-461 22-189 (207)
127 3qq5_A Small GTP-binding prote 99.7 4.3E-18 1.5E-22 181.5 11.2 154 264-484 32-193 (423)
128 2gco_A H9, RHO-related GTP-bin 99.7 2.4E-17 8.3E-22 156.3 15.2 156 264-461 23-189 (201)
129 2yc2_C IFT27, small RAB-relate 99.7 7.4E-18 2.5E-22 159.0 11.3 154 264-461 18-181 (208)
130 1ega_A Protein (GTP-binding pr 99.7 1E-17 3.5E-22 170.8 13.0 150 264-461 6-164 (301)
131 2qu8_A Putative nucleolar GTP- 99.7 2.6E-17 8.8E-22 159.6 15.2 157 264-461 27-194 (228)
132 2j0v_A RAC-like GTP-binding pr 99.7 2.1E-17 7.2E-22 157.4 14.1 156 264-461 7-169 (212)
133 3l0i_B RAS-related protein RAB 99.7 9.8E-19 3.4E-23 165.5 4.3 153 263-461 30-185 (199)
134 2atv_A RERG, RAS-like estrogen 99.7 3E-17 1E-21 154.7 14.0 154 264-461 26-180 (196)
135 3bwd_D RAC-like GTP-binding pr 99.7 1.2E-17 4E-22 154.3 10.5 157 264-461 6-170 (182)
136 3q3j_B RHO-related GTP-binding 99.7 3.5E-17 1.2E-21 157.4 14.0 159 262-461 23-192 (214)
137 3o47_A ADP-ribosylation factor 99.7 2.2E-17 7.5E-22 170.4 12.9 151 264-461 163-316 (329)
138 2hjg_A GTP-binding protein ENG 99.7 6.3E-18 2.1E-22 180.7 8.8 144 266-461 3-154 (436)
139 3cbq_A GTP-binding protein REM 99.7 7.2E-17 2.5E-21 153.1 14.5 154 263-461 20-177 (195)
140 1mky_A Probable GTP-binding pr 99.7 4.6E-17 1.6E-21 174.2 14.5 144 267-461 2-155 (439)
141 2gj8_A MNME, tRNA modification 99.7 1.2E-17 4.1E-22 155.2 8.7 142 265-461 3-155 (172)
142 1m7b_A RND3/RHOE small GTP-bin 99.7 8.6E-17 2.9E-21 150.0 14.4 156 264-461 5-172 (184)
143 3b1v_A Ferrous iron uptake tra 99.7 1.5E-17 5.1E-22 167.4 9.8 143 266-461 3-153 (272)
144 2q3h_A RAS homolog gene family 99.7 9.5E-17 3.2E-21 151.4 14.7 158 262-461 16-184 (201)
145 3c5c_A RAS-like protein 12; GD 99.7 8.4E-17 2.9E-21 151.1 13.9 151 263-461 18-175 (187)
146 1mky_A Probable GTP-binding pr 99.7 4.3E-17 1.5E-21 174.4 13.4 155 265-462 179-345 (439)
147 3ihw_A Centg3; RAS, centaurin, 99.7 4.6E-17 1.6E-21 152.8 11.9 151 261-461 15-169 (184)
148 2iwr_A Centaurin gamma 1; ANK 99.7 1.3E-16 4.6E-21 147.0 14.2 146 264-461 5-158 (178)
149 3r7w_A Gtpase1, GTP-binding pr 99.7 1.6E-16 5.3E-21 162.3 16.0 159 265-461 2-170 (307)
150 1gwn_A RHO-related GTP-binding 99.7 1.8E-16 6.3E-21 151.7 14.1 157 263-461 25-193 (205)
151 3gee_A MNME, tRNA modification 99.7 8.7E-17 3E-21 173.9 13.3 148 265-461 232-387 (476)
152 2xtp_A GTPase IMAP family memb 99.7 3.6E-17 1.2E-21 161.9 9.4 157 264-461 20-197 (260)
153 3t5d_A Septin-7; GTP-binding p 99.7 1.7E-16 5.8E-21 159.1 13.6 157 265-461 7-193 (274)
154 3lvq_E ARF-GAP with SH3 domain 99.7 1.9E-16 6.3E-21 171.5 14.8 152 263-461 319-473 (497)
155 3lxw_A GTPase IMAP family memb 99.7 1.4E-16 4.7E-21 157.7 12.5 153 262-461 17-197 (247)
156 4dcu_A GTP-binding protein ENG 99.7 7.1E-17 2.4E-21 173.5 10.2 147 263-461 20-174 (456)
157 2g3y_A GTP-binding protein GEM 99.7 2.5E-16 8.5E-21 152.5 12.5 153 264-461 35-192 (211)
158 2cxx_A Probable GTP-binding pr 99.6 1.6E-16 5.6E-21 147.5 8.1 150 267-461 2-173 (190)
159 1xzp_A Probable tRNA modificat 99.6 2.3E-16 7.8E-21 170.9 10.2 143 266-461 243-394 (482)
160 3th5_A RAS-related C3 botulinu 99.5 1.2E-17 4.1E-22 158.5 0.0 156 264-461 28-194 (204)
161 2cjw_A GTP-binding protein GEM 99.6 7.8E-16 2.7E-20 145.5 12.5 153 264-461 4-161 (192)
162 2wkq_A NPH1-1, RAS-related C3 99.6 2.6E-15 9E-20 152.2 15.4 156 264-461 153-319 (332)
163 2zej_A Dardarin, leucine-rich 99.6 1E-15 3.5E-20 143.1 10.6 160 266-461 2-167 (184)
164 3geh_A MNME, tRNA modification 99.6 6.2E-16 2.1E-20 166.7 8.3 143 265-461 223-373 (462)
165 1nrj_B SR-beta, signal recogni 99.6 7E-16 2.4E-20 147.5 7.7 150 263-459 9-171 (218)
166 3lxx_A GTPase IMAP family memb 99.6 3.2E-15 1.1E-19 146.1 11.0 154 263-456 26-193 (239)
167 2e87_A Hypothetical protein PH 99.6 1.6E-14 5.3E-19 150.4 15.8 151 264-461 165-325 (357)
168 3dpu_A RAB family protein; roc 99.6 2.1E-15 7.2E-20 165.1 9.4 150 263-461 38-197 (535)
169 2f9l_A RAB11B, member RAS onco 99.6 1.7E-14 6E-19 136.3 14.2 151 265-461 4-157 (199)
170 1lnz_A SPO0B-associated GTP-bi 99.6 2.2E-15 7.6E-20 156.4 7.9 149 266-461 158-319 (342)
171 1pui_A ENGB, probable GTP-bind 99.6 2.8E-14 9.4E-19 135.4 14.2 152 264-461 24-188 (210)
172 2aka_B Dynamin-1; fusion prote 99.6 5.3E-15 1.8E-19 148.5 9.6 104 343-461 124-242 (299)
173 1h65_A Chloroplast outer envel 99.6 3.8E-14 1.3E-18 141.5 15.1 183 264-485 37-243 (270)
174 3def_A T7I23.11 protein; chlor 99.6 1.9E-14 6.4E-19 143.2 12.6 126 264-426 34-172 (262)
175 2qtf_A Protein HFLX, GTP-bindi 99.5 8.9E-14 3E-18 145.5 15.6 153 267-461 180-343 (364)
176 1oix_A RAS-related protein RAB 99.5 1.1E-13 3.7E-18 130.5 14.0 152 264-461 27-181 (191)
177 3c5h_A Glucocorticoid receptor 99.5 3E-14 1E-18 141.3 7.4 83 367-461 162-244 (255)
178 1jwy_B Dynamin A GTPase domain 99.5 3.8E-14 1.3E-18 143.7 8.2 71 342-420 129-213 (315)
179 3r7w_B Gtpase2, GTP-binding pr 99.5 1E-13 3.6E-18 142.7 10.8 156 268-461 1-163 (331)
180 2ged_A SR-beta, signal recogni 99.5 5.3E-14 1.8E-18 131.4 7.7 129 264-435 46-184 (193)
181 2j69_A Bacterial dynamin-like 99.5 9E-14 3.1E-18 156.9 11.1 109 344-461 174-314 (695)
182 2qag_A Septin-2, protein NEDD5 99.5 7.9E-14 2.7E-18 145.6 8.7 158 265-461 36-222 (361)
183 3p32_A Probable GTPase RV1496/ 99.4 5.3E-13 1.8E-17 138.8 11.5 104 340-461 168-273 (355)
184 1wxq_A GTP-binding protein; st 99.4 3.8E-13 1.3E-17 142.3 10.0 91 267-380 1-114 (397)
185 2x2e_A Dynamin-1; nitration, h 99.4 5.4E-13 1.8E-17 138.6 8.4 105 342-461 128-247 (353)
186 1udx_A The GTP-binding protein 99.4 1.7E-12 5.9E-17 138.0 11.4 148 267-461 158-314 (416)
187 2www_A Methylmalonic aciduria 99.3 3.1E-12 1.1E-16 132.9 11.3 103 341-461 164-268 (349)
188 2qpt_A EH domain-containing pr 99.3 2.2E-12 7.5E-17 141.9 10.3 80 344-433 154-244 (550)
189 2p67_A LAO/AO transport system 99.3 1.6E-12 5.3E-17 134.7 8.0 103 341-461 146-250 (341)
190 2wsm_A Hydrogenase expression/ 99.3 2.1E-12 7.1E-17 123.7 8.2 97 342-461 107-203 (221)
191 3t34_A Dynamin-related protein 99.3 7.6E-13 2.6E-17 137.6 4.9 105 342-462 134-251 (360)
192 3zvr_A Dynamin-1; hydrolase, D 99.3 1.4E-12 4.7E-17 147.6 6.8 105 342-461 148-267 (772)
193 1yrb_A ATP(GTP)binding protein 99.2 3.8E-11 1.3E-15 118.0 12.0 109 343-461 108-246 (262)
194 2qag_C Septin-7; cell cycle, c 99.2 6.5E-11 2.2E-15 125.9 10.9 156 266-461 31-216 (418)
195 2qnr_A Septin-2, protein NEDD5 99.2 6.7E-11 2.3E-15 120.4 10.5 159 265-462 17-204 (301)
196 4a9a_A Ribosome-interacting GT 99.2 2E-11 6.9E-16 128.1 6.4 114 265-418 71-195 (376)
197 1jal_A YCHF protein; nucleotid 99.1 1.2E-10 4.2E-15 121.5 7.4 84 267-379 3-108 (363)
198 3ohm_A Guanine nucleotide-bind 99.1 1.8E-10 6.1E-15 118.7 7.8 127 331-461 154-307 (327)
199 4fid_A G protein alpha subunit 99.0 3.8E-10 1.3E-14 116.9 8.3 130 331-461 148-317 (340)
200 2dby_A GTP-binding protein; GD 99.0 3.9E-10 1.3E-14 118.0 6.8 37 343-379 68-111 (368)
201 2qm8_A GTPase/ATPase; G protei 99.0 1.2E-09 4.2E-14 112.9 10.5 104 341-461 145-250 (337)
202 2hf9_A Probable hydrogenase ni 99.0 1.7E-09 5.9E-14 103.6 10.6 96 343-461 118-213 (226)
203 2qag_B Septin-6, protein NEDD5 98.8 1.2E-08 4.2E-13 108.5 10.9 139 264-441 40-210 (427)
204 1cip_A Protein (guanine nucleo 98.8 4.5E-09 1.6E-13 109.4 7.3 129 331-461 180-333 (353)
205 2j37_W Signal recognition part 98.8 3.6E-09 1.2E-13 115.0 5.1 66 342-419 182-254 (504)
206 3sop_A Neuronal-specific septi 98.7 3.8E-08 1.3E-12 98.6 11.6 142 266-441 2-174 (270)
207 3ec1_A YQEH GTPase; atnos1, at 98.7 1.3E-09 4.6E-14 113.9 1.0 147 267-460 163-319 (369)
208 3h2y_A GTPase family protein; 98.7 3E-09 1E-13 111.3 1.0 148 267-460 161-318 (368)
209 1zcb_A G alpha I/13; GTP-bindi 98.7 2.1E-08 7.2E-13 104.7 7.4 127 334-461 191-342 (362)
210 1tq4_A IIGP1, interferon-induc 98.6 2.4E-07 8.3E-12 98.2 13.4 156 265-461 68-242 (413)
211 1u0l_A Probable GTPase ENGC; p 98.5 1.5E-07 5.3E-12 95.4 9.1 100 345-462 64-163 (301)
212 2ohf_A Protein OLA1, GTP-bindi 98.5 7.4E-08 2.5E-12 101.6 6.2 87 264-379 20-128 (396)
213 1azs_C GS-alpha; complex (lyas 98.5 1.7E-07 5.7E-12 99.1 8.0 84 334-418 207-297 (402)
214 1nj3_A NPL4; NZF domain, rubre 98.5 5.3E-08 1.8E-12 65.4 2.1 26 49-74 5-30 (31)
215 3dm5_A SRP54, signal recogniti 98.5 1.3E-06 4.3E-11 93.4 13.8 95 342-462 181-281 (443)
216 2d9g_A YY1-associated factor 2 98.4 6.6E-08 2.2E-12 73.0 2.6 33 44-76 5-37 (53)
217 2xtz_A Guanine nucleotide-bind 98.4 1.7E-07 5.8E-12 97.5 6.7 76 342-418 181-263 (354)
218 3a9j_C Mitogen-activated prote 98.4 8.1E-08 2.8E-12 65.9 2.2 28 48-75 6-33 (34)
219 2crc_A Ubiquitin conjugating e 98.3 4.1E-07 1.4E-11 68.2 3.9 31 47-77 7-37 (52)
220 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 1.2E-06 4E-11 92.4 7.5 88 264-379 18-127 (392)
221 2yv5_A YJEQ protein; hydrolase 98.2 2.2E-06 7.6E-11 86.9 9.3 112 354-487 66-190 (302)
222 2v3c_C SRP54, signal recogniti 98.2 8.3E-06 2.8E-10 87.0 13.7 66 342-418 179-251 (432)
223 3b08_B Ranbp-type and C3HC4-ty 98.2 4.4E-07 1.5E-11 70.6 2.7 30 49-78 7-36 (64)
224 3kl4_A SRP54, signal recogniti 98.2 2.1E-06 7.1E-11 91.6 8.3 93 342-461 178-279 (433)
225 1j8m_F SRP54, signal recogniti 98.1 2.1E-05 7.1E-10 79.7 14.0 94 342-461 179-280 (297)
226 1puj_A YLQF, conserved hypothe 98.1 6.8E-06 2.3E-10 82.7 8.8 92 348-461 3-95 (282)
227 3l82_B F-box only protein 4; T 98.0 3.9E-06 1.3E-10 81.1 5.7 180 264-461 14-212 (227)
228 3e70_C DPA, signal recognition 97.9 1.7E-05 5.9E-10 81.5 8.6 92 343-461 211-309 (328)
229 1puj_A YLQF, conserved hypothe 97.9 4.2E-06 1.4E-10 84.2 3.9 27 264-290 118-144 (282)
230 1f5n_A Interferon-induced guan 97.9 7.8E-06 2.7E-10 90.3 5.9 28 263-290 35-62 (592)
231 3ec1_A YQEH GTPase; atnos1, at 97.9 1.1E-05 3.8E-10 84.2 5.9 100 348-462 53-152 (369)
232 3h2y_A GTPase family protein; 97.9 1.7E-05 5.7E-10 82.8 6.9 96 353-462 55-150 (368)
233 1t9h_A YLOQ, probable GTPase E 97.7 8.2E-05 2.8E-09 75.8 9.7 85 364-462 83-167 (307)
234 2yhs_A FTSY, cell division pro 97.7 7.8E-05 2.7E-09 80.6 9.1 26 264-289 291-316 (503)
235 2xxa_A Signal recognition part 97.6 6.5E-05 2.2E-09 80.1 7.5 66 342-418 182-253 (433)
236 3cnl_A YLQF, putative uncharac 97.6 2.3E-05 7.8E-10 78.0 2.9 86 351-461 4-90 (262)
237 3cnl_A YLQF, putative uncharac 97.6 1.8E-05 6.3E-10 78.7 1.9 24 267-290 100-123 (262)
238 1zu4_A FTSY; GTPase, signal re 97.5 0.00025 8.4E-09 72.6 9.9 26 264-289 103-128 (320)
239 1rj9_A FTSY, signal recognitio 97.5 0.00018 6.3E-09 73.0 8.1 25 265-289 101-125 (304)
240 1vma_A Cell division protein F 97.4 0.00092 3.1E-08 67.9 12.4 25 265-289 103-127 (306)
241 2px0_A Flagellar biosynthesis 97.4 0.0002 6.8E-09 72.4 7.4 24 266-289 105-128 (296)
242 3gj3_B Nuclear pore complex pr 97.4 4.5E-05 1.5E-09 51.7 1.7 29 47-75 4-32 (33)
243 3szr_A Interferon-induced GTP- 97.4 0.00022 7.6E-09 79.1 7.8 22 268-289 47-68 (608)
244 3l2o_B F-box only protein 4; s 97.4 0.00014 4.9E-09 73.4 5.3 98 352-461 195-297 (312)
245 2ffh_A Protein (FFH); SRP54, s 97.2 0.00061 2.1E-08 72.4 8.8 65 342-418 179-250 (425)
246 4dzz_A Plasmid partitioning pr 97.2 0.0012 4.1E-08 61.5 9.9 65 342-418 74-143 (206)
247 3q5d_A Atlastin-1; G protein, 97.1 0.001 3.5E-08 71.1 8.8 27 263-289 64-90 (447)
248 1ls1_A Signal recognition part 97.0 0.0011 3.6E-08 67.0 7.5 25 265-289 97-121 (295)
249 2ebq_A Nuclear pore complex pr 96.9 0.00048 1.6E-08 50.3 3.1 33 45-77 6-38 (47)
250 3b9q_A Chloroplast SRP recepto 96.6 0.0032 1.1E-07 63.7 7.3 25 265-289 99-123 (302)
251 2rcn_A Probable GTPase ENGC; Y 96.6 0.0061 2.1E-07 63.2 9.5 82 364-461 127-208 (358)
252 3gj5_B Nuclear pore complex pr 96.6 0.00075 2.6E-08 45.9 1.6 29 47-75 4-32 (34)
253 1w7p_D VPS36P, YLR417W; ESCRT- 96.5 0.00037 1.3E-08 76.0 0.0 27 50-76 180-206 (566)
254 3cwq_A Para family chromosome 96.5 0.011 3.8E-07 55.9 10.2 66 342-418 66-133 (209)
255 2og2_A Putative signal recogni 96.4 0.0057 1.9E-07 63.5 8.0 25 265-289 156-180 (359)
256 2ebr_A Nuclear pore complex pr 96.4 0.002 6.9E-08 47.1 3.0 31 47-77 8-38 (47)
257 3la6_A Tyrosine-protein kinase 95.6 0.054 1.9E-06 54.1 10.6 67 343-418 201-267 (286)
258 3end_A Light-independent proto 95.6 0.051 1.7E-06 54.1 10.4 67 342-417 155-225 (307)
259 3gj7_B Nuclear pore complex pr 95.6 0.0039 1.3E-07 52.8 1.7 29 47-75 69-97 (98)
260 1t9h_A YLOQ, probable GTPase E 95.2 0.0033 1.1E-07 63.9 -0.1 23 267-289 174-196 (307)
261 1bif_A 6-phosphofructo-2-kinas 94.9 0.0029 1E-07 67.7 -1.4 26 264-289 37-62 (469)
262 1ye8_A Protein THEP1, hypothet 94.9 0.01 3.5E-07 55.1 2.3 23 268-290 2-24 (178)
263 1kgd_A CASK, peripheral plasma 94.5 0.013 4.4E-07 54.0 2.1 23 267-289 6-28 (180)
264 1lvg_A Guanylate kinase, GMP k 94.5 0.013 4.5E-07 55.0 2.1 23 267-289 5-27 (198)
265 2ebv_A Nuclear pore complex pr 94.5 0.018 6.1E-07 43.7 2.4 29 47-75 28-56 (57)
266 3gj7_B Nuclear pore complex pr 94.5 0.0067 2.3E-07 51.3 0.0 31 47-77 6-36 (98)
267 2lk0_A RNA-binding protein 5; 94.3 0.015 5.2E-07 38.9 1.5 29 47-75 2-30 (32)
268 3tr0_A Guanylate kinase, GMP k 94.2 0.017 5.7E-07 53.6 2.1 24 267-290 8-31 (205)
269 3c8u_A Fructokinase; YP_612366 94.1 0.022 7.6E-07 53.6 2.9 26 265-290 21-46 (208)
270 3kjh_A CO dehydrogenase/acetyl 94.1 0.072 2.4E-06 50.5 6.5 66 342-417 130-195 (254)
271 3a00_A Guanylate kinase, GMP k 94.1 0.018 6E-07 53.3 2.0 23 268-290 3-25 (186)
272 1znw_A Guanylate kinase, GMP k 94.1 0.018 6.3E-07 54.1 2.1 23 268-290 22-44 (207)
273 1zp6_A Hypothetical protein AT 94.0 0.021 7.3E-07 52.3 2.5 23 267-289 10-32 (191)
274 3ney_A 55 kDa erythrocyte memb 94.0 0.024 8.1E-07 53.9 2.6 27 264-290 17-43 (197)
275 1z6g_A Guanylate kinase; struc 93.8 0.022 7.5E-07 54.3 2.1 24 267-290 24-47 (218)
276 1knq_A Gluconate kinase; ALFA/ 93.8 0.03 1E-06 50.7 2.9 26 266-291 8-33 (175)
277 3asz_A Uridine kinase; cytidin 93.7 0.028 9.5E-07 52.6 2.7 25 266-290 6-30 (211)
278 1g3q_A MIND ATPase, cell divis 93.7 0.12 4.2E-06 48.8 7.3 67 342-418 110-176 (237)
279 1kag_A SKI, shikimate kinase I 93.6 0.024 8.3E-07 51.1 1.9 25 267-291 5-29 (173)
280 2jeo_A Uridine-cytidine kinase 93.5 0.031 1.1E-06 54.0 2.7 30 262-291 21-50 (245)
281 1tev_A UMP-CMP kinase; ploop, 93.5 0.03 1E-06 51.1 2.4 27 265-291 2-28 (196)
282 1s96_A Guanylate kinase, GMP k 93.5 0.026 9E-07 54.2 2.1 24 267-290 17-40 (219)
283 2k1p_A Zinc finger RAN-binding 93.5 0.046 1.6E-06 36.8 2.7 29 47-75 3-31 (33)
284 2ph1_A Nucleotide-binding prot 93.4 0.13 4.6E-06 49.9 7.1 67 342-417 127-194 (262)
285 3lw7_A Adenylate kinase relate 93.4 0.031 1E-06 49.7 2.2 25 267-292 2-26 (179)
286 2j41_A Guanylate kinase; GMP, 93.4 0.033 1.1E-06 51.5 2.5 25 266-290 6-30 (207)
287 4gp7_A Metallophosphoesterase; 93.4 0.028 9.5E-07 51.4 1.9 21 268-288 11-31 (171)
288 4eun_A Thermoresistant glucoki 93.4 0.031 1.1E-06 52.1 2.4 27 266-292 29-55 (200)
289 3vaa_A Shikimate kinase, SK; s 93.3 0.033 1.1E-06 51.9 2.4 27 265-291 24-50 (199)
290 3tau_A Guanylate kinase, GMP k 93.3 0.036 1.2E-06 52.2 2.6 25 266-290 8-32 (208)
291 3tif_A Uncharacterized ABC tra 93.2 0.033 1.1E-06 54.0 2.4 22 268-289 33-54 (235)
292 1kht_A Adenylate kinase; phosp 93.2 0.033 1.1E-06 50.7 2.3 26 266-291 3-28 (192)
293 2pcj_A ABC transporter, lipopr 93.2 0.034 1.2E-06 53.4 2.4 22 268-289 32-53 (224)
294 1qhx_A CPT, protein (chloramph 93.2 0.037 1.3E-06 50.0 2.5 24 267-290 4-27 (178)
295 1htw_A HI0065; nucleotide-bind 93.1 0.037 1.3E-06 50.4 2.4 24 267-290 34-57 (158)
296 3lnc_A Guanylate kinase, GMP k 93.1 0.034 1.2E-06 53.1 2.1 25 266-290 27-52 (231)
297 2rcn_A Probable GTPase ENGC; Y 93.1 0.035 1.2E-06 57.6 2.3 24 267-290 216-239 (358)
298 4ido_A Atlastin-1; GTPase, GTP 93.1 0.22 7.7E-06 53.0 8.6 26 263-288 64-89 (457)
299 3kb2_A SPBC2 prophage-derived 93.0 0.037 1.3E-06 49.5 2.2 23 268-290 3-25 (173)
300 3b85_A Phosphate starvation-in 93.0 0.041 1.4E-06 52.4 2.6 22 268-289 24-45 (208)
301 2bbw_A Adenylate kinase 4, AK4 92.9 0.04 1.4E-06 53.1 2.4 25 266-290 27-51 (246)
302 1ly1_A Polynucleotide kinase; 92.9 0.043 1.5E-06 49.4 2.5 22 267-288 3-24 (181)
303 1cke_A CK, MSSA, protein (cyti 92.9 0.041 1.4E-06 51.9 2.4 25 267-291 6-30 (227)
304 3t61_A Gluconokinase; PSI-biol 92.9 0.036 1.2E-06 51.6 1.9 25 267-291 19-43 (202)
305 2bdt_A BH3686; alpha-beta prot 92.9 0.041 1.4E-06 50.5 2.3 22 268-289 4-25 (189)
306 2plr_A DTMP kinase, probable t 92.9 0.045 1.5E-06 50.7 2.6 26 265-290 3-28 (213)
307 2cbz_A Multidrug resistance-as 92.9 0.041 1.4E-06 53.4 2.4 23 267-289 32-54 (237)
308 2pze_A Cystic fibrosis transme 92.8 0.042 1.4E-06 53.0 2.4 23 267-289 35-57 (229)
309 1mv5_A LMRA, multidrug resista 92.8 0.042 1.4E-06 53.4 2.4 24 267-290 29-52 (243)
310 2onk_A Molybdate/tungstate ABC 92.8 0.043 1.5E-06 53.5 2.4 24 267-290 25-48 (240)
311 2rhm_A Putative kinase; P-loop 92.7 0.053 1.8E-06 49.5 2.8 27 265-291 4-30 (193)
312 1g6h_A High-affinity branched- 92.7 0.044 1.5E-06 53.8 2.4 24 267-290 34-57 (257)
313 1hyq_A MIND, cell division inh 92.7 0.16 5.5E-06 49.0 6.4 66 343-418 110-175 (263)
314 2qor_A Guanylate kinase; phosp 92.7 0.038 1.3E-06 51.7 1.8 25 266-290 12-36 (204)
315 2ff7_A Alpha-hemolysin translo 92.7 0.045 1.5E-06 53.5 2.4 24 267-290 36-59 (247)
316 3cm0_A Adenylate kinase; ATP-b 92.6 0.052 1.8E-06 49.5 2.6 27 265-291 3-29 (186)
317 1b0u_A Histidine permease; ABC 92.6 0.045 1.6E-06 53.9 2.4 23 267-289 33-55 (262)
318 1sgw_A Putative ABC transporte 92.6 0.044 1.5E-06 52.5 2.1 22 268-289 37-58 (214)
319 4g1u_C Hemin import ATP-bindin 92.6 0.045 1.5E-06 54.1 2.3 24 267-290 38-61 (266)
320 1ji0_A ABC transporter; ATP bi 92.6 0.047 1.6E-06 53.0 2.4 23 267-289 33-55 (240)
321 3fb4_A Adenylate kinase; psych 92.5 0.048 1.7E-06 51.1 2.3 24 268-291 2-25 (216)
322 3gfo_A Cobalt import ATP-bindi 92.5 0.048 1.6E-06 54.3 2.4 24 267-290 35-58 (275)
323 1ex7_A Guanylate kinase; subst 92.5 0.046 1.6E-06 51.3 2.1 21 269-289 4-24 (186)
324 2d2e_A SUFC protein; ABC-ATPas 92.5 0.049 1.7E-06 53.2 2.4 22 268-289 31-52 (250)
325 2ghi_A Transport protein; mult 92.5 0.049 1.7E-06 53.6 2.4 24 267-290 47-70 (260)
326 3dl0_A Adenylate kinase; phosp 92.4 0.053 1.8E-06 50.9 2.5 24 268-291 2-25 (216)
327 2jaq_A Deoxyguanosine kinase; 92.4 0.049 1.7E-06 50.1 2.2 24 268-291 2-25 (205)
328 2olj_A Amino acid ABC transpor 92.4 0.051 1.7E-06 53.8 2.4 23 267-289 51-73 (263)
329 2if2_A Dephospho-COA kinase; a 92.4 0.052 1.8E-06 50.4 2.4 22 267-288 2-23 (204)
330 2qt1_A Nicotinamide riboside k 92.3 0.07 2.4E-06 49.8 3.2 27 264-290 19-45 (207)
331 2qi9_C Vitamin B12 import ATP- 92.3 0.052 1.8E-06 53.2 2.4 23 268-290 28-50 (249)
332 1uf9_A TT1252 protein; P-loop, 92.3 0.061 2.1E-06 49.5 2.7 26 264-289 6-31 (203)
333 1vpl_A ABC transporter, ATP-bi 92.3 0.053 1.8E-06 53.4 2.4 23 267-289 42-64 (256)
334 1u0l_A Probable GTPase ENGC; p 92.3 0.051 1.7E-06 54.5 2.3 23 268-290 171-193 (301)
335 2vli_A Antibiotic resistance p 92.3 0.052 1.8E-06 49.2 2.1 27 265-291 4-30 (183)
336 3zvl_A Bifunctional polynucleo 92.3 0.12 4.1E-06 54.3 5.2 26 264-289 256-281 (416)
337 2v9p_A Replication protein E1; 92.3 0.052 1.8E-06 55.0 2.3 24 266-289 126-149 (305)
338 3gj8_B Nuclear pore complex pr 92.2 0.049 1.7E-06 45.4 1.7 29 47-75 62-90 (92)
339 2yv5_A YJEQ protein; hydrolase 92.2 0.053 1.8E-06 54.5 2.3 21 267-287 166-186 (302)
340 2zu0_C Probable ATP-dependent 92.2 0.055 1.9E-06 53.5 2.4 23 267-289 47-69 (267)
341 2ixe_A Antigen peptide transpo 92.2 0.055 1.9E-06 53.6 2.4 24 267-290 46-69 (271)
342 3gj8_B Nuclear pore complex pr 92.2 0.026 8.9E-07 47.1 0.0 29 48-76 6-34 (92)
343 1y63_A LMAJ004144AAA protein; 92.2 0.064 2.2E-06 49.3 2.6 25 265-289 9-33 (184)
344 2ihy_A ABC transporter, ATP-bi 92.2 0.056 1.9E-06 53.9 2.4 24 267-290 48-71 (279)
345 2wwf_A Thymidilate kinase, put 92.2 0.075 2.6E-06 49.4 3.1 25 265-289 9-33 (212)
346 2eyu_A Twitching motility prot 92.1 0.056 1.9E-06 53.3 2.3 23 267-289 26-48 (261)
347 3aez_A Pantothenate kinase; tr 92.1 0.067 2.3E-06 54.2 3.0 27 263-289 87-113 (312)
348 3tlx_A Adenylate kinase 2; str 92.1 0.065 2.2E-06 51.9 2.8 27 265-291 28-54 (243)
349 3trf_A Shikimate kinase, SK; a 92.1 0.058 2E-06 49.1 2.3 26 266-291 5-30 (185)
350 2i3b_A HCR-ntpase, human cance 92.1 0.048 1.6E-06 51.1 1.7 22 268-289 3-24 (189)
351 2yz2_A Putative ABC transporte 92.1 0.058 2E-06 53.2 2.4 23 267-289 34-56 (266)
352 2v54_A DTMP kinase, thymidylat 92.1 0.065 2.2E-06 49.5 2.6 26 265-290 3-28 (204)
353 1jjv_A Dephospho-COA kinase; P 92.1 0.061 2.1E-06 50.0 2.4 22 267-288 3-24 (206)
354 2c95_A Adenylate kinase 1; tra 92.1 0.063 2.2E-06 49.1 2.5 27 265-291 8-34 (196)
355 1nks_A Adenylate kinase; therm 92.0 0.065 2.2E-06 48.7 2.5 25 267-291 2-26 (194)
356 1np6_A Molybdopterin-guanine d 92.0 0.063 2.2E-06 49.7 2.4 23 267-289 7-29 (174)
357 2nq2_C Hypothetical ABC transp 92.0 0.059 2E-06 52.8 2.3 22 268-289 33-54 (253)
358 2ehv_A Hypothetical protein PH 92.0 0.056 1.9E-06 51.4 2.1 21 267-287 31-51 (251)
359 3iij_A Coilin-interacting nucl 91.9 0.062 2.1E-06 48.9 2.2 27 265-291 10-36 (180)
360 4a74_A DNA repair and recombin 91.9 0.06 2.1E-06 50.5 2.2 22 267-288 26-47 (231)
361 3uie_A Adenylyl-sulfate kinase 91.9 0.073 2.5E-06 49.6 2.7 25 266-290 25-49 (200)
362 1nn5_A Similar to deoxythymidy 91.9 0.069 2.4E-06 49.6 2.6 25 265-289 8-32 (215)
363 1uj2_A Uridine-cytidine kinase 91.9 0.069 2.4E-06 51.8 2.6 28 264-291 20-47 (252)
364 1aky_A Adenylate kinase; ATP:A 91.8 0.066 2.3E-06 50.5 2.3 27 265-291 3-29 (220)
365 2cdn_A Adenylate kinase; phosp 91.7 0.075 2.6E-06 49.3 2.6 28 264-291 18-45 (201)
366 3bh0_A DNAB-like replicative h 91.7 0.39 1.3E-05 48.3 8.0 21 268-288 70-90 (315)
367 2f1r_A Molybdopterin-guanine d 91.6 0.04 1.4E-06 50.9 0.6 21 268-288 4-24 (171)
368 1zd8_A GTP:AMP phosphotransfer 91.6 0.075 2.6E-06 50.4 2.5 26 266-291 7-32 (227)
369 1ukz_A Uridylate kinase; trans 91.6 0.099 3.4E-06 48.4 3.3 28 264-291 13-40 (203)
370 2yvu_A Probable adenylyl-sulfa 91.5 0.092 3.2E-06 48.0 3.0 26 264-289 11-36 (186)
371 3ec2_A DNA replication protein 91.5 0.062 2.1E-06 48.9 1.7 24 266-289 38-61 (180)
372 3ea0_A ATPase, para family; al 91.5 0.31 1.1E-05 46.2 6.7 66 343-418 118-185 (245)
373 2pjz_A Hypothetical protein ST 91.5 0.074 2.5E-06 52.5 2.4 23 268-290 32-54 (263)
374 1qf9_A UMP/CMP kinase, protein 91.4 0.096 3.3E-06 47.5 2.9 26 266-291 6-31 (194)
375 2bbs_A Cystic fibrosis transme 91.4 0.079 2.7E-06 53.1 2.5 23 267-289 65-87 (290)
376 4e22_A Cytidylate kinase; P-lo 91.3 0.083 2.8E-06 51.4 2.5 27 265-291 26-52 (252)
377 2vp4_A Deoxynucleoside kinase; 91.3 0.11 3.8E-06 49.6 3.3 26 264-289 18-43 (230)
378 3nh6_A ATP-binding cassette SU 91.3 0.053 1.8E-06 54.9 1.1 24 266-289 80-103 (306)
379 1nij_A Hypothetical protein YJ 91.3 0.097 3.3E-06 52.9 3.1 24 266-289 4-27 (318)
380 1odf_A YGR205W, hypothetical 3 91.1 0.1 3.5E-06 52.3 2.9 26 264-289 29-54 (290)
381 1vht_A Dephospho-COA kinase; s 91.1 0.095 3.3E-06 49.2 2.6 23 266-288 4-26 (218)
382 3ug7_A Arsenical pump-driving 91.1 1.8 6.1E-05 44.1 12.4 83 368-460 237-323 (349)
383 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.077 2.6E-06 54.1 2.1 23 267-289 172-194 (330)
384 3tqc_A Pantothenate kinase; bi 91.0 0.099 3.4E-06 53.3 2.8 27 263-289 89-115 (321)
385 2kjq_A DNAA-related protein; s 91.0 0.094 3.2E-06 47.0 2.4 22 267-288 37-58 (149)
386 1xjc_A MOBB protein homolog; s 91.0 0.092 3.1E-06 48.6 2.4 23 266-288 4-26 (169)
387 1gvn_B Zeta; postsegregational 91.0 0.11 3.7E-06 51.8 3.1 27 264-290 31-57 (287)
388 1sq5_A Pantothenate kinase; P- 91.0 0.099 3.4E-06 52.5 2.8 27 264-290 78-104 (308)
389 1rz3_A Hypothetical protein rb 91.0 0.1 3.6E-06 48.6 2.7 25 265-289 21-45 (201)
390 2bwj_A Adenylate kinase 5; pho 91.0 0.086 2.9E-06 48.3 2.1 26 266-291 12-37 (199)
391 3zq6_A Putative arsenical pump 90.9 1.8 6.1E-05 43.5 12.1 82 369-460 223-308 (324)
392 4a1f_A DNAB helicase, replicat 90.9 0.31 1.1E-05 50.0 6.4 22 268-289 48-69 (338)
393 1e4v_A Adenylate kinase; trans 90.9 0.093 3.2E-06 49.3 2.3 24 268-291 2-25 (214)
394 1lw7_A Transcriptional regulat 90.8 0.075 2.6E-06 54.6 1.7 26 266-291 170-195 (365)
395 2gza_A Type IV secretion syste 90.8 0.078 2.7E-06 54.7 1.8 23 267-289 176-198 (361)
396 1zak_A Adenylate kinase; ATP:A 90.8 0.082 2.8E-06 49.9 1.8 25 267-291 6-30 (222)
397 2pt5_A Shikimate kinase, SK; a 90.7 0.099 3.4E-06 46.7 2.2 24 268-291 2-25 (168)
398 1via_A Shikimate kinase; struc 90.6 0.084 2.9E-06 47.8 1.7 24 268-291 6-29 (175)
399 1n0z_A ZNF265; zinc finger, RN 90.6 0.19 6.4E-06 36.3 3.1 30 47-76 11-42 (45)
400 2p5t_B PEZT; postsegregational 90.4 0.097 3.3E-06 50.8 2.0 27 264-290 30-56 (253)
401 3jvv_A Twitching mobility prot 90.4 0.1 3.5E-06 53.9 2.3 22 268-289 125-146 (356)
402 2pbr_A DTMP kinase, thymidylat 90.4 0.11 3.7E-06 47.3 2.2 22 268-289 2-23 (195)
403 3sr0_A Adenylate kinase; phosp 90.4 0.11 3.8E-06 49.4 2.3 26 267-292 1-26 (206)
404 1gtv_A TMK, thymidylate kinase 90.3 0.061 2.1E-06 50.1 0.5 22 268-289 2-23 (214)
405 1wcv_1 SOJ, segregation protei 90.1 0.89 3E-05 43.8 8.7 66 342-418 110-182 (257)
406 2ewv_A Twitching motility prot 90.1 0.11 3.8E-06 53.8 2.3 23 267-289 137-159 (372)
407 3r20_A Cytidylate kinase; stru 90.1 0.12 4E-06 50.3 2.2 28 264-291 7-34 (233)
408 3tui_C Methionine import ATP-b 90.1 0.12 4E-06 53.7 2.4 23 267-289 55-77 (366)
409 3k9g_A PF-32 protein; ssgcid, 90.0 0.78 2.7E-05 44.2 8.2 66 342-417 143-209 (267)
410 3be4_A Adenylate kinase; malar 90.0 0.13 4.4E-06 48.6 2.5 26 266-291 5-30 (217)
411 3fvq_A Fe(3+) IONS import ATP- 90.0 0.11 3.9E-06 53.7 2.3 23 268-290 32-54 (359)
412 2zr9_A Protein RECA, recombina 90.0 0.3 1E-05 50.1 5.4 22 267-288 62-83 (349)
413 2pez_A Bifunctional 3'-phospho 90.0 0.14 4.6E-06 46.6 2.5 24 266-289 5-28 (179)
414 2z0h_A DTMP kinase, thymidylat 89.9 0.13 4.3E-06 47.1 2.3 22 268-289 2-23 (197)
415 3umf_A Adenylate kinase; rossm 89.9 0.16 5.3E-06 48.9 2.9 29 264-292 27-55 (217)
416 3kta_A Chromosome segregation 89.9 0.13 4.3E-06 46.8 2.2 23 268-290 28-50 (182)
417 1z47_A CYSA, putative ABC-tran 89.8 0.12 4.1E-06 53.4 2.2 23 268-290 43-65 (355)
418 1v5w_A DMC1, meiotic recombina 89.8 0.65 2.2E-05 47.3 7.7 23 267-289 123-145 (343)
419 1xp8_A RECA protein, recombina 89.7 0.37 1.3E-05 49.9 5.9 21 268-288 76-96 (366)
420 3a4m_A L-seryl-tRNA(SEC) kinas 89.7 0.14 4.8E-06 49.9 2.5 24 266-289 4-27 (260)
421 2oap_1 GSPE-2, type II secreti 89.7 0.12 4E-06 56.1 2.0 24 266-289 260-283 (511)
422 2yyz_A Sugar ABC transporter, 89.6 0.13 4.3E-06 53.3 2.2 23 268-290 31-53 (359)
423 1zuh_A Shikimate kinase; alpha 89.5 0.14 4.7E-06 45.9 2.2 25 267-291 8-32 (168)
424 2it1_A 362AA long hypothetical 89.4 0.13 4.5E-06 53.3 2.1 23 268-290 31-53 (362)
425 2iyv_A Shikimate kinase, SK; t 89.4 0.11 3.9E-06 47.2 1.5 24 268-291 4-27 (184)
426 1ak2_A Adenylate kinase isoenz 89.4 0.15 5.1E-06 48.7 2.4 27 265-291 15-41 (233)
427 1g29_1 MALK, maltose transport 89.4 0.13 4.5E-06 53.4 2.2 23 268-290 31-53 (372)
428 3rlf_A Maltose/maltodextrin im 89.3 0.13 4.6E-06 53.6 2.1 23 268-290 31-53 (381)
429 2f6r_A COA synthase, bifunctio 89.3 0.18 6.1E-06 50.0 2.9 24 264-287 73-96 (281)
430 1v43_A Sugar-binding transport 89.2 0.14 4.7E-06 53.3 2.1 24 267-290 38-61 (372)
431 1q3t_A Cytidylate kinase; nucl 89.1 0.16 5.6E-06 48.5 2.4 30 262-291 12-41 (236)
432 2xb4_A Adenylate kinase; ATP-b 89.1 0.15 5.3E-06 48.3 2.2 24 268-291 2-25 (223)
433 3ake_A Cytidylate kinase; CMP 89.1 0.17 5.6E-06 46.7 2.4 24 268-291 4-27 (208)
434 2ze6_A Isopentenyl transferase 88.9 0.16 5.5E-06 49.4 2.3 24 268-291 3-26 (253)
435 1p9r_A General secretion pathw 88.9 0.16 5.3E-06 53.7 2.3 23 267-289 168-190 (418)
436 2w0m_A SSO2452; RECA, SSPF, un 88.9 0.15 5.3E-06 47.5 2.1 22 268-289 25-46 (235)
437 1u94_A RECA protein, recombina 88.9 0.32 1.1E-05 50.1 4.6 22 267-288 64-85 (356)
438 1e6c_A Shikimate kinase; phosp 88.9 0.15 5.2E-06 45.6 1.9 24 268-291 4-27 (173)
439 2j9u_B VPS36, vacuolar protein 88.9 0.1 3.4E-06 41.6 0.6 26 50-75 17-51 (76)
440 2x8a_A Nuclear valosin-contain 88.8 0.15 5.2E-06 50.3 2.1 22 269-290 47-68 (274)
441 2z43_A DNA repair and recombin 88.7 0.53 1.8E-05 47.4 6.0 22 267-288 108-129 (324)
442 3bfv_A CAPA1, CAPB2, membrane 88.6 0.5 1.7E-05 46.5 5.7 67 343-418 191-257 (271)
443 2vhj_A Ntpase P4, P4; non- hyd 88.6 0.29 1E-05 50.0 4.0 21 268-288 125-145 (331)
444 4f4c_A Multidrug resistance pr 88.5 0.17 5.9E-06 60.9 2.6 26 264-289 1103-1128(1321)
445 3d31_A Sulfate/molybdate ABC t 88.4 0.12 4.1E-06 53.3 1.0 23 268-290 28-50 (348)
446 1jbk_A CLPB protein; beta barr 88.3 0.21 7.2E-06 44.5 2.5 23 266-288 43-65 (195)
447 3cio_A ETK, tyrosine-protein k 88.3 0.76 2.6E-05 45.9 6.8 67 343-418 213-279 (299)
448 1ixz_A ATP-dependent metallopr 88.3 0.18 6.1E-06 48.5 2.1 22 268-289 51-72 (254)
449 2grj_A Dephospho-COA kinase; T 88.2 0.21 7.3E-06 46.7 2.6 26 264-289 10-35 (192)
450 3gd7_A Fusion complex of cysti 88.2 0.2 6.7E-06 52.5 2.5 24 267-290 48-71 (390)
451 1zcb_A G alpha I/13; GTP-bindi 88.2 0.21 7.1E-06 51.7 2.6 24 263-286 30-53 (362)
452 1cr0_A DNA primase/helicase; R 88.1 0.19 6.5E-06 49.6 2.2 22 268-289 37-58 (296)
453 2h92_A Cytidylate kinase; ross 88.0 0.17 6E-06 47.3 1.8 27 265-291 2-28 (219)
454 2npi_A Protein CLP1; CLP1-PCF1 88.0 0.17 5.8E-06 54.0 1.9 24 267-290 139-162 (460)
455 1m7g_A Adenylylsulfate kinase; 87.9 0.23 8E-06 46.4 2.6 24 266-289 25-48 (211)
456 3q9l_A Septum site-determining 87.7 0.49 1.7E-05 45.2 4.9 66 343-418 113-186 (260)
457 2obl_A ESCN; ATPase, hydrolase 87.7 0.22 7.5E-06 51.2 2.4 24 267-290 72-95 (347)
458 1oxx_K GLCV, glucose, ABC tran 87.6 0.11 3.9E-06 53.5 0.3 22 268-289 33-54 (353)
459 3nwj_A ATSK2; P loop, shikimat 87.6 0.18 6.1E-06 49.4 1.6 27 266-292 48-74 (250)
460 1a7j_A Phosphoribulokinase; tr 87.5 0.21 7.1E-06 49.9 2.1 26 265-290 4-29 (290)
461 3qf4_B Uncharacterized ABC tra 87.4 0.25 8.4E-06 54.4 2.8 27 264-290 379-405 (598)
462 4eaq_A DTMP kinase, thymidylat 87.4 0.28 9.7E-06 47.0 2.9 26 265-290 25-50 (229)
463 1yqt_A RNAse L inhibitor; ATP- 87.3 0.23 7.7E-06 54.1 2.4 24 267-290 48-71 (538)
464 2yl4_A ATP-binding cassette SU 87.2 0.24 8.3E-06 54.4 2.6 25 266-290 370-394 (595)
465 1p5z_B DCK, deoxycytidine kina 87.2 0.24 8.1E-06 48.2 2.2 27 264-290 22-48 (263)
466 2q6t_A DNAB replication FORK h 87.1 0.92 3.2E-05 47.8 7.0 21 268-288 202-222 (444)
467 3b60_A Lipid A export ATP-bind 87.1 0.24 8.2E-06 54.2 2.5 24 266-289 369-392 (582)
468 3io5_A Recombination and repai 87.0 1.5 5E-05 44.8 8.0 20 268-287 30-49 (333)
469 1iy2_A ATP-dependent metallopr 87.0 0.23 8E-06 48.6 2.1 23 268-290 75-97 (278)
470 2i1q_A DNA repair and recombin 87.0 1 3.5E-05 45.0 6.9 22 267-288 99-120 (322)
471 2cvh_A DNA repair and recombin 86.8 0.25 8.5E-06 45.9 2.1 21 268-288 22-42 (220)
472 1ihu_A Arsenical pump-driving 86.8 1.9 6.4E-05 47.0 9.4 157 260-440 2-264 (589)
473 3bgw_A DNAB-like replicative h 86.8 0.96 3.3E-05 47.9 6.9 21 268-288 199-219 (444)
474 3hr8_A Protein RECA; alpha and 86.8 4.3 0.00015 41.7 11.6 22 267-288 62-83 (356)
475 1f2t_A RAD50 ABC-ATPase; DNA d 86.8 0.26 8.8E-06 44.1 2.1 21 268-288 25-45 (149)
476 1ltq_A Polynucleotide kinase; 86.8 0.27 9.3E-06 48.4 2.5 23 267-289 3-25 (301)
477 4a82_A Cystic fibrosis transme 86.7 0.23 7.9E-06 54.3 2.1 25 266-290 367-391 (578)
478 1n0w_A DNA repair protein RAD5 86.6 0.26 8.8E-06 46.5 2.1 22 267-288 25-46 (243)
479 1in4_A RUVB, holliday junction 86.5 0.25 8.5E-06 50.0 2.1 24 267-290 52-75 (334)
480 3ozx_A RNAse L inhibitor; ATP 86.5 0.26 9E-06 53.6 2.4 24 267-290 26-49 (538)
481 2cr8_A MDM4 protein; ZF-ranbp 86.4 0.51 1.7E-05 34.6 3.0 32 50-81 11-42 (53)
482 3b5x_A Lipid A export ATP-bind 86.3 0.26 8.8E-06 54.0 2.2 25 265-289 368-392 (582)
483 4f4c_A Multidrug resistance pr 86.2 0.27 9.2E-06 59.2 2.5 27 264-290 442-468 (1321)
484 3euj_A Chromosome partition pr 86.2 0.28 9.6E-06 52.7 2.3 23 267-289 30-52 (483)
485 2b8t_A Thymidine kinase; deoxy 86.0 0.89 3E-05 43.7 5.6 23 267-289 13-35 (223)
486 3io3_A DEHA2D07832P; chaperone 86.0 2.8 9.7E-05 42.8 9.7 42 369-418 232-273 (348)
487 3qf4_A ABC transporter, ATP-bi 85.8 0.28 9.6E-06 53.8 2.1 25 266-290 369-393 (587)
488 2c6a_A Ubiquitin-protein ligas 85.7 0.36 1.2E-05 34.7 1.9 31 49-79 12-42 (46)
489 3bk7_A ABC transporter ATP-bin 85.7 0.3 1E-05 53.9 2.4 24 267-290 118-141 (607)
490 2p65_A Hypothetical protein PF 85.7 0.27 9.1E-06 43.9 1.6 23 266-288 43-65 (187)
491 2w58_A DNAI, primosome compone 85.7 0.34 1.2E-05 44.6 2.4 22 267-288 55-76 (202)
492 3j16_B RLI1P; ribosome recycli 85.6 0.31 1.1E-05 53.9 2.4 24 267-290 104-127 (608)
493 3bos_A Putative DNA replicatio 85.6 0.34 1.2E-05 45.2 2.4 24 266-289 52-75 (242)
494 1xwi_A SKD1 protein; VPS4B, AA 85.6 2.5 8.7E-05 42.3 9.0 23 266-288 45-67 (322)
495 3qf7_A RAD50; ABC-ATPase, ATPa 85.6 0.3 1E-05 50.4 2.1 21 269-289 26-46 (365)
496 2oze_A ORF delta'; para, walke 85.4 1.5 5.1E-05 43.0 7.1 67 342-418 153-225 (298)
497 2dpy_A FLII, flagellum-specifi 85.4 0.34 1.2E-05 51.4 2.4 23 268-290 159-181 (438)
498 1lv7_A FTSH; alpha/beta domain 85.4 0.37 1.3E-05 46.4 2.5 23 267-289 46-68 (257)
499 1yqt_A RNAse L inhibitor; ATP- 85.3 0.33 1.1E-05 52.8 2.4 23 267-289 313-335 (538)
500 1xe1_A Hypothetical protein PF 85.2 2.5 8.5E-05 36.5 7.4 56 474-533 8-69 (116)
No 1
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-43 Score=392.84 Aligned_cols=270 Identities=42% Similarity=0.766 Sum_probs=187.5
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..+..++|+|+|++|+|||||+++|++..+.+..+.+.+++..+...|+++|.++|.++....++.+|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 34678999999999999999999999999999988888888888899999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..|+|||||||.+|...+..+++.+|++|||||+..|.|+.++.. ..|+++++.++..+++|++|||+||+|++.++
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~-~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE-NGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCS-CSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCcccccccc-chHHHHHHHHHHHcCCCeEEEEEecccccccc
Confidence 99999999999999999999999999999999999998866555421 57999999999999998899999999999877
Q ss_pred hhHHHHHHHHHHHHH-HHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEE
Q 009375 422 KDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 422 ~e~~eei~~~L~~~l-~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~ 500 (536)
.++++.+.+++..++ +.+++....++||++||++|+||.++... .++.||.|++|+++|..+.++.+..++||+|+|.
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~-~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v~ 410 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS-DLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCC-GGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccc-ccccccchHHHHHHHHhhccccccccccchheee
Confidence 888999999999999 88898767788999999999999875543 3689999999999999988888888999999999
Q ss_pred EEEEeCCCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 501 DVLKSQHGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 501 d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
++|++..|++ ++|+|++|+|++||.|.++|.+.
T Consensus 411 ~v~~~~~g~v-~~G~v~~G~l~~Gd~v~i~p~~~ 443 (592)
T 3mca_A 411 DVYRSPRSVT-VTGRVEAGNVQVNQVLYDVSSQE 443 (592)
T ss_dssp EEEEETTEEE-EEEEEEESEEETTCEEEETTTTE
T ss_pred EEEecCCeEE-EEEEEeeeeEccCCEEEEccCCc
Confidence 9999866666 89999999999999999999864
No 2
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.2e-41 Score=365.27 Aligned_cols=267 Identities=40% Similarity=0.736 Sum_probs=244.3
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..+..++|+|+|++|+|||||+++|++..+.+..+.+.++++.+...++++|.++|.++....++++|+|++.....+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc--c
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--Q 419 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~--~ 419 (536)
.+..++|||||||++|..++..+++.+|++|||||+..|.++.+|.. ..|+++++.++..+++|++|||+||+|+. +
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~-~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCC-CchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 99999999999999999999999999999999999999876665543 36999999999999999899999999995 4
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCC-CccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEE
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMP 498 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~-~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~ 498 (536)
+++.+++++.+++..+++.+++... .++|+|+||++|+|+.++.. .+.||.|++|++.|+.++++.+..++||+|+
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~---~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~ 248 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD---FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLP 248 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc---cccccCchHHHHHHHhCCCCccCCCCCeEEE
Confidence 5677889999999999999998643 57899999999999998654 4899999999999999999988899999999
Q ss_pred EEEEEEeCCCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 499 ICDVLKSQHGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 499 I~d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
|.++++ ..|++ +.|+|++|+|++||.|+++|+++
T Consensus 249 v~~~~~-~~G~v-~~G~v~~G~l~~Gd~v~~~p~~~ 282 (439)
T 3j2k_7 249 IVDKYK-DMGTV-VLGKLESGSIFKGQQLVMMPNKH 282 (439)
T ss_pred EEEEEc-CCCeE-EEEEEEeeEEecCCEEEEccCCc
Confidence 999987 47988 89999999999999999999864
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=2.9e-40 Score=358.42 Aligned_cols=270 Identities=36% Similarity=0.712 Sum_probs=215.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.+..++|+|+|++|+|||||+++|++..+.+..+.+.+.+..+...|++++.++|.++....++.+|+|++.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 35679999999999999999999999999998888888888888999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..++|||||||++|...+..+++.+|++|||||++.+.++.++. +..++++++.++..++++++|||+||+|+..+.+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~-~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD-LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CC-CCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccc-hhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999999986665553 4579999999999999888999999999998778
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhc----CC--CCCCCCCCee
Q 009375 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL----RP--PPREFSKPLL 496 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l----~~--~~~~~~~P~~ 496 (536)
.+++++.+.+..+++.+++....++|+++||++|+||.++......+.||+|++|++.|+.+ ++ |.+..++||+
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r 268 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 268 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceE
Confidence 88999999999999999987667899999999999999876543347899999999999766 22 5567889999
Q ss_pred EEEEEEEEeC----CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 497 MPICDVLKSQ----HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 497 ~~I~d~~~~~----~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
|+|.++|+++ .|+| ++|+|++|+|++||.|.++|+++
T Consensus 269 ~~v~~v~~~~~~~g~g~v-~~G~v~~G~l~~gd~v~~~p~~~ 309 (483)
T 3p26_A 269 FSVLEIIPSKKTSNDLAL-VSGKLESGSIQPGESLTIYPSEQ 309 (483)
T ss_dssp EEEEEEEC---CCSCCEE-EEEEEEESEECTTCEEEEETTTE
T ss_pred EEEEEEEccCCcCCCceE-EEEEEecceEccCCEEEEeCCCC
Confidence 9999999975 6777 89999999999999999999864
No 4
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=2.2e-39 Score=349.43 Aligned_cols=265 Identities=44% Similarity=0.805 Sum_probs=237.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+..++|+|+|++|+|||||+++|++..+.+..+.+.+++..+...|++++.+++.++....++.+|+|++..+..+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999999988777877778888888899999999999999999999999999999988999999
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..++|||||||++|...+..++..+|++|||||+..+.++.+|+. ..|+++++.++..+++|++|||+||+|+..++++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~-~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK-DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT-TSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCc-chhHHHHHHHHHHcCCCeEEEEEEccccccCCHH
Confidence 999999999999999999999999999999999997743333322 2388999999999999889999999999976778
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccc------------hhhHHHHHHhcCCCCCCC
Q 009375 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK------------GPCLLDAIDSLRPPPREF 491 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~------------g~tLle~L~~l~~~~~~~ 491 (536)
+++++.+++..+++.+++....++|+++||++|+|+.++.. .+.||. +++|+++|+.+++|.+..
T Consensus 164 ~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~---~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~ 240 (458)
T 1f60_A 164 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT---NAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT 240 (458)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS---SCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCT
T ss_pred HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc---cCchhhcccccccccccchHHHHHHhhccCCCcccC
Confidence 88889999999999998865457899999999999987654 378997 678999999999998889
Q ss_pred CCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 492 ~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
++|++|+|.++|+++ .|+| ++|+|++|.|++||.|.++|.+
T Consensus 241 ~~p~r~~i~~v~~~~g~G~v-~~G~v~~G~l~~gd~v~~~p~~ 282 (458)
T 1f60_A 241 DKPLRLPLQDVYKIGGIGTV-PVGRVETGVIKPGMVVTFAPAG 282 (458)
T ss_dssp TSCCEEEEEEEEEETTTEEE-EEEECCBSCBCTTCEEEEETTT
T ss_pred CCCcEEEEEEEEEeCCCcEE-EEEEEeCCeEcCCCEEEECCCC
Confidence 999999999999999 9998 8999999999999999999985
No 5
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-40 Score=363.48 Aligned_cols=270 Identities=36% Similarity=0.710 Sum_probs=243.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|++|+|||||+++|++..+.+..+++.++++.+...|++++.++|.++....++.+|+|++.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 46689999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..++|||||||++|...+..+++.+|++|||||++.|.++.++. +..++.+++.++..++++++|||+||+|+..+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~-~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD-LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCC-TTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccch-hhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 999999999999999999999999999999999999876555553 3579999999999999988999999999998778
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcC--C----CCCCCCCCee
Q 009375 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR--P----PPREFSKPLL 496 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~--~----~~~~~~~P~~ 496 (536)
.+++++.+.+..+++.+++....++||++||++|+||.++......+.||.|++|++.|+.+. . |.+..++||+
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 889999999999999999876678999999999999998765444589999999999998772 2 3456789999
Q ss_pred EEEEEEEEeC----CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 497 MPICDVLKSQ----HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 497 ~~I~d~~~~~----~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
|+|.++|+++ .|+| ++|+|++|+|++||.|+++|+++
T Consensus 403 ~~V~~v~~~~~~~g~g~v-~~G~V~~G~lk~Gd~v~~~p~~~ 443 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLAL-VSGKLESGSIQPGESLTIYPSEQ 443 (611)
T ss_dssp EECCEEECCSSSCSSSSE-EEEEEEESEECTTCEEEETTTTE
T ss_pred hheeeeeccCccCCCeeE-EEEEEEeceeccCCEEEEecCCc
Confidence 9999999975 5788 89999999999999999999864
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=2.9e-39 Score=346.25 Aligned_cols=266 Identities=44% Similarity=0.755 Sum_probs=229.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+++|++|+|||||+++|++..+.+..+.+.+++..+...|++++.+++.+|....|+.+|+|++.....+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999999988788877777777778888899999999999999999999999999988899999
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc--cc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~--~~ 421 (536)
..++|||||||++|...+..+++.+|++|||||+..+.|+..+. +..|+++++.++..++++++|||+||+|+.. ++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999876554432 5679999999999999988999999999986 55
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEEE
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 501 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~d 501 (536)
+++++.+.+++..+++.+++....++++++||++|+|+.++... +.||.|++|+++|+.+++|.+...+|++|+|.+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~---~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccc---cccccchhHHHHHhccCCCCCCCCCCeEEEEEE
Confidence 67888899999999999998666679999999999999987653 699999999999999888887778999999999
Q ss_pred EEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 502 VLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 502 ~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
+|+++ .|++ ++|+|++|+|++||.|+++|.+.
T Consensus 240 v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~ 272 (435)
T 1jny_A 240 VYSISGVGTV-PVGRVESGVLKVGDKIVFMPAGK 272 (435)
T ss_dssp EEEETTTEEE-EEEECCBSCEETTCEEEEETTTE
T ss_pred EEEeCCCcEE-EEEEEecCeEEcCCEEEECCcee
Confidence 99998 9998 79999999999999999999753
No 7
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=2e-39 Score=350.59 Aligned_cols=267 Identities=41% Similarity=0.743 Sum_probs=198.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+..++|+++|++|+|||||+++|++..+.+..+.+.++...+...|+.++.+++.+|....|+.+|+|++..+..+.+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 56799999999999999999999988888877777777777778888899999999999999999999999988888899
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc--ccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~--~~~ 421 (536)
..++|||||||++|..++..++..+|++|||||+..|.++.+|.. ..|+++++.++..+++|++|||+||+|+. .++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~-~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER-GGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST-TCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC-CCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 999999999999999999999999999999999998865555542 36899999999999998899999999995 456
Q ss_pred hhHHHHHHHHHHHHHHHc-CCC-CCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEE
Q 009375 422 KDRFDSIKVQLGTFLRSC-GFK-DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~-g~~-~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I 499 (536)
+++++.+..++..+++.+ ++. ...++++++||++|+|+.++.. ...+.||.|++|++.|+.++++.+..++||+|+|
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~-~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD-SSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC-TTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc-cccCccccchhHHHHHHhCCCCcCCCCCCcEEEE
Confidence 778888999999999888 874 2246899999999999998663 2368999999999999999988888889999999
Q ss_pred EEEEEeCCCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 500 CDVLKSQHGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 500 ~d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
.++++. .|+| ++|+|++|+|++||.|.++|.++
T Consensus 279 ~~~~~~-~G~v-~~G~v~~G~l~~gd~v~~~p~~~ 311 (467)
T 1r5b_A 279 ASKYKD-LGTI-LEGKIEAGSIKKNSNVLVMPINQ 311 (467)
T ss_dssp CEEEES-SSEE-EEEECCBSEEETTEEEEEETTTE
T ss_pred EEEEeC-CCeE-EEEEEeeeEEeeCCEEEEccCCe
Confidence 999875 7987 89999999999999999999863
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.2e-37 Score=331.42 Aligned_cols=259 Identities=29% Similarity=0.519 Sum_probs=210.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCC--CccchhccccccccccccceEEEEEEEEeec
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gk--gs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
+..++|+|+|++|+|||||+++|++..+.+..+.+.+........+. ..+.+++.++....|+++|+|++..+.++..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999988776655544333333322222 4566778889999999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++|||||||++|...+..++..+|++|||||+..+ ...++++++.++..++++++|||+||+|+..+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g--------~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG--------VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 999999999999999999999999999999999999987 467899999999999998899999999999766
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEEE
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 501 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~d 501 (536)
+++++++.+++..+++.+++....++++++||++|+|+.++.. .+.||.|++|++.|+.++++.+...+|++|+|.+
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~---~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~ 250 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE---RSPWYAGQSLMEILETVEIASDRNYTDLRFPVQY 250 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT---TCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc---cCccccCchHHHHHhcCCCcccCCCCCcEEEEEE
Confidence 7778888889999998888433456899999999999998765 3789999999999999998888889999999999
Q ss_pred EEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 502 VLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 502 ~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
+++.. .|.. +.|+|++|+|++||.|.++|+++
T Consensus 251 v~~~~~~~~g-~~G~v~~G~l~~gd~v~~~p~~~ 283 (434)
T 1zun_B 251 VNRPNLNFRG-FAGTLASGIVHKGDEIVVLPSGK 283 (434)
T ss_dssp EECSSSSCCE-EEEECCBSCEETTCEEEETTTCC
T ss_pred EeccCCCceE-EEEEEecceEeCCCEEEEecCCe
Confidence 99887 6776 78999999999999999999864
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=2e-34 Score=305.12 Aligned_cols=237 Identities=34% Similarity=0.510 Sum_probs=202.1
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+++|++|+|||||+++|++... ..++..+...+.++....++.+|+|++.....+...+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 66 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILA---------------EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHH---------------HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSC
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhh---------------hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCe
Confidence 468999999999999999999985321 11222222223467788899999999998888888889
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhH
Q 009375 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.++|||||||++|...+..+++.+|++|||||++.+ ...|+++++.++..+++|++|||+||+|+.. +.+.
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEM 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHH
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHH
Confidence 999999999999999999999999999999999987 4679999999999999987889999999985 3556
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccch--hhHHHHHHh-cCCCCCCCCCCeeEEEEE
Q 009375 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG--PCLLDAIDS-LRPPPREFSKPLLMPICD 501 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g--~tLle~L~~-l~~~~~~~~~P~~~~I~d 501 (536)
++.+.+++..+++.+++....++++++||++|.|.. .+.||.| ..|+++|.. +++|.+..++||+|+|++
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~-------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~ 210 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQR-------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVES 210 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTC-------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCE
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhccccc-------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEE
Confidence 777888899999999886667899999999998853 2679987 689999965 777888889999999999
Q ss_pred EEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 502 VLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 502 ~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+|.++ +|+| ++|+|++|+|++||.|.++|.+
T Consensus 211 v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~~~~ 242 (397)
T 1d2e_A 211 VYSIPGRGTV-VTGTLERGILKKGDECEFLGHS 242 (397)
T ss_dssp EEEETTTEEE-EEEECCBSEEETTCEEEEEETT
T ss_pred EEEeCCceEE-EEEEEeeceEeCCCEEEEeCCC
Confidence 99999 9998 8999999999999999999864
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=3.8e-33 Score=295.91 Aligned_cols=246 Identities=33% Similarity=0.507 Sum_probs=203.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCC-CccchhccccccccccccceEEEEEEEEeec
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK-GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gk-gs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
.+..++|+|+|++|+|||||+++|++... ..+. ..+...+.++....++.+|+|++.....+..
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 72 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA---------------AENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH---------------HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh---------------hcCccccccchhhccCCHHHHHcCCCEEeeeeEecc
Confidence 35679999999999999999999985311 1111 1121122467788889999999988888888
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++|||||||++|...+..+++.+|++|||||+..+ ...++++++.++..+++|++|||+||+|+.. +
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~ 143 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFMNKVDMVD-D 143 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-C
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEECccccC-c
Confidence 889999999999999999999999999999999999987 4578999999999999988899999999985 3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCC--cccccccch-hhHHHHHHh-cCCCCCCCCCCeeE
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD--GRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLM 497 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~--~~~~~Wy~g-~tLle~L~~-l~~~~~~~~~P~~~ 497 (536)
.+.++.+.+++..+++.+++....++++++||++|+|+.+.... ...+.||.+ ..|+++|.. +++|.+..++||+|
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~ 223 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLM 223 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEE
Confidence 45667777888899998888655678999999999986432110 013679876 579999866 77778888999999
Q ss_pred EEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 498 ~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+|.++|+++ +|+| ++|+|++|+|++||.|.++|.+
T Consensus 224 ~v~~v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~~~~ 259 (405)
T 2c78_A 224 PVEDVFTITGRGTV-ATGRIERGKVKVGDEVEIVGLA 259 (405)
T ss_dssp ECCEEEEETTTEEE-EEEECCBSEEETTCEEEEESSS
T ss_pred EEEEEEEcCCCceE-EEEEEecccccCCCEEEEeCCC
Confidence 999999999 9998 7999999999999999999986
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.97 E-value=2.5e-31 Score=307.70 Aligned_cols=239 Identities=33% Similarity=0.492 Sum_probs=187.2
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..+..++|+|+|++|+|||||+++|++... ..++..+...+.++....|+.+|+|++.....+..
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEcC
Confidence 446779999999999999999999985311 11211111112467778899999999988888888
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++|||||||++|...+..++..+|++|||||++.+ ...|+++++.++..+++|++|||+||+|+.. .
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG--------v~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d 427 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLGRQVGVPYIIVFLNKCDMVD-D 427 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC--------SCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-C
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc--------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-c
Confidence 889999999999999999999999999999999999987 4568999999999999998899999999985 3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccch-hhHHHHHHh-cCCCCCCCCCCeeEEE
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 499 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g-~tLle~L~~-l~~~~~~~~~P~~~~I 499 (536)
.+.++.+.+++..+++.+++....++++++||++|.+- .+.||.| ..|+++|.. +++|.+..++||+|+|
T Consensus 428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng--------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pI 499 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG--------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPI 499 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC--------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEEC
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC--------CccccccchhhHhHHhhhcCCCccccccceeeec
Confidence 45677788889999999988666789999999999542 1468876 579999865 7777778889999999
Q ss_pred EEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 500 ~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
.+++.++ +|+| ++|+|++|+|++||.|.++|.+
T Consensus 500 d~Vf~i~G~GtV-vtGrV~sGtLkvGD~V~I~ps~ 533 (1289)
T 3avx_A 500 EDVFSISGRGTV-VTGRVERGIIKVGEEVEIVGIK 533 (1289)
T ss_dssp CEEEEETTTEEE-EEEECCBSEEETTCEEEEESSS
T ss_pred cccccccCCcEE-EEEEEeccEEecCCEEEEecCC
Confidence 9999999 9998 8999999999999999999986
No 12
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.97 E-value=1.5e-30 Score=276.39 Aligned_cols=215 Identities=31% Similarity=0.441 Sum_probs=173.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
...++|+++||+|+|||||+++|++. ..+....++.+|+|+...+..+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~----------------------------~~~~~~~e~~~giTi~~~~~~~~~~~ 59 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELRRGITIKIGFADAEIRR 59 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC----------------------------CCC--CGGGGSCSSSCCEEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCC----------------------------ccccChhhhcCCcEEEEeeeeeeccc
Confidence 56799999999999999999999842 1234456777888887665443321
Q ss_pred ----------------------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH
Q 009375 343 ----------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI 400 (536)
Q Consensus 343 ----------------------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll 400 (536)
...++|||||||++|..++..++..+|++|||||++.+. .+.|+.+++.++
T Consensus 60 ~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~ 132 (410)
T 1kk1_A 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMAL 132 (410)
T ss_dssp CTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHH
T ss_pred ccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHH
Confidence 268999999999999999999999999999999999762 267999999999
Q ss_pred HHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHH
Q 009375 401 RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDA 480 (536)
Q Consensus 401 ~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~ 480 (536)
..++++++|||+||+|+... ....+..+++..+++.... ..++++++||++|+|+.+ |+++
T Consensus 133 ~~~~~~~iivviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~---------------L~~~ 193 (410)
T 1kk1_A 133 QIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVA--ENAPIIPISALHGANIDV---------------LVKA 193 (410)
T ss_dssp HHHTCCCEEEEEECGGGSCH--HHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH---------------HHHH
T ss_pred HHcCCCcEEEEEECccCCCH--HHHHHHHHHHHHHHHhcCc--CCCeEEEeeCCCCCCHHH---------------HHHH
Confidence 99998789999999999843 3333444556666654322 346899999999999974 9999
Q ss_pred HHh-cCCCCCCCCCCeeEEEEEEEEeC---------CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 481 IDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 481 L~~-l~~~~~~~~~P~~~~I~d~~~~~---------~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
|.. +++|.+...+|++|+|.++|.+. +|+| +.|+|++|+|++||.|.++|++
T Consensus 194 l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~ 255 (410)
T 1kk1_A 194 IEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGV-LDGSIVQGKLKVGDEIEIRPGV 255 (410)
T ss_dssp HHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCE-EEEEEEESCEETTCEEEEEEEE
T ss_pred HHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEE-EEEEEEeCeEeeCCEEEECCCC
Confidence 965 77788888999999999998653 5777 7999999999999999999963
No 13
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=1.5e-30 Score=276.34 Aligned_cols=215 Identities=29% Similarity=0.422 Sum_probs=161.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (536)
+..++|+++|++|+|||||+++|++. ..+....++.+|+|+...+..+..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~----------------------------~~~~~~~e~~~giTi~~~~~~~~~~~ 57 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV----------------------------WTDRHSEELRRGISIRLGYADCEIRK 57 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC----------------------------CCCC-------CCCCCCEEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC----------------------------ccccCcccccCCcEEEeccccccccc
Confidence 45799999999999999999999842 123445667788888765543222
Q ss_pred -------------C--------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH
Q 009375 342 -------------K--------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI 400 (536)
Q Consensus 342 -------------~--------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll 400 (536)
. ...++|||||||++|..++..++..+|++|||||++.+. ...|+.+++.++
T Consensus 58 ~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~ 130 (408)
T 1s0u_A 58 CPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC-------PQPQTKEHLMAL 130 (408)
T ss_dssp CTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS-------SCHHHHHHHHHH
T ss_pred ccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC-------CCchhHHHHHHH
Confidence 1 268999999999999999999999999999999999762 267999999999
Q ss_pred HHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHH
Q 009375 401 RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDA 480 (536)
Q Consensus 401 ~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~ 480 (536)
..++++++|||+||+|+..... ..+..+++..+++.... ..++++++||++|+||.+ |+++
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~~--~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~---------------L~~~ 191 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEKQ--AEENYEQIKEFVKGTIA--ENAPIIPISAHHEANIDV---------------LLKA 191 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTTT--TTTHHHHHHHHHTTSTT--TTCCEEEC------CHHH---------------HHHH
T ss_pred HHcCCCeEEEEEEccCCCCHHH--HHHHHHHHHHHHhhcCC--CCCeEEEeeCCCCCCHHH---------------HHHH
Confidence 9899877999999999985422 11223344555554322 346899999999999974 9999
Q ss_pred HHh-cCCCCCCCCCCeeEEEEEEEEeC---------CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 481 IDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 481 L~~-l~~~~~~~~~P~~~~I~d~~~~~---------~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
|.. ++.+.+..++|++|+|.++|.++ +|+| ++|+|.+|+|++||.|.++|.+
T Consensus 192 l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~ 253 (408)
T 1s0u_A 192 IQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGV-LGGAIIQGVFKVGDEIEIRPGI 253 (408)
T ss_dssp HHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCE-EEEEEEESCEETTCEEEEEEEE
T ss_pred HHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeE-EEEEEEECeEecCCEEEEcCCc
Confidence 965 78788888999999999999763 5777 8999999999999999999963
No 14
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=3e-31 Score=287.68 Aligned_cols=220 Identities=28% Similarity=0.467 Sum_probs=175.1
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..++.++|+++|++|+|||||+++|++... ...++....++.+|+|++..+..+.+
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~------------------------~~~~d~~~~e~~~GiTi~~~~~~~~~ 70 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIAS------------------------TSAHDKLPESQKRGITIDIGFSAFKL 70 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEE
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCc------------------------ccccccccccccCccEEecceEEEEE
Confidence 346789999999999999999999984321 12356667788899999988888888
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++|||||||++|...+..++..+|++|||||++.| +..|+.+++.++..+++| +|||+||+|+. .
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~ip-~IvviNK~Dl~--~ 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG--------PKTQTGEHMLILDHFNIP-IIVVITKSDNA--G 139 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-BCEEEECTTSS--C
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCcc--c
Confidence 899999999999999999999999999999999999987 568999999999999999 59999999998 3
Q ss_pred hhHHHHHHHHHHHHHHHc-CCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCC--CCCCCCCeeE
Q 009375 422 KDRFDSIKVQLGTFLRSC-GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPP--PREFSKPLLM 497 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~-g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~--~~~~~~P~~~ 497 (536)
.+.++++.+++..+++.. ++. .++++++||++|+||.+ |+++|.. ++.+ .+..++||+|
T Consensus 140 ~~~~~~~~~~l~~~l~~~~~~~--~~~ii~vSA~~g~gI~~---------------L~~~L~~~i~~~~~~~~~~~~~~~ 202 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTHNLK--NSSIIPISAKTGFGVDE---------------LKNLIITTLNNAEIIRNTESYFKM 202 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSGG--GCCEEECCTTTCTTHHH---------------HHHHHHHHHHHSCCCCCSSSCCBC
T ss_pred chhHHHHHHHHHHHHhhhcccc--cceEEEEECcCCCCHHH---------------HHHHHHHhhcCccccccccccccc
Confidence 566778888888888877 653 45889999999999975 8888854 3333 6677889999
Q ss_pred EEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 498 ~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
+|.++|..+ .|+| ++|+|.+|.|++||.|.++|.+.
T Consensus 203 ~v~~v~~~~g~G~v-~~g~v~~G~l~~gd~v~~~p~~~ 239 (482)
T 1wb1_A 203 PLDHAFPIKGAGTV-VTGTINKGIVKVGDELKVLPINM 239 (482)
T ss_dssp BCSCEECCSSCCCE-ECCCCCBSCCCSSEEECCTTTCC
T ss_pred cceeEEEecCCceE-EEEEEEEeEEeeCCEEEECCCCc
Confidence 999999998 9998 89999999999999999999764
No 15
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.96 E-value=3.3e-29 Score=265.62 Aligned_cols=228 Identities=25% Similarity=0.334 Sum_probs=168.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEE----
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY---- 338 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~---- 338 (536)
.++.++|+++|++|+|||||+++|++........ +...............+++.......
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG----------------YAETNIGVCESCKKPEAYVTEPSCKSCGSD 68 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE----------------EEEEEEEECTTSCTTTTEESSSCCGGGTCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccC----------------ccccceeeccccccccceeccccccccccc
Confidence 4567999999999999999999998632111000 00000000000011111111110000
Q ss_pred -eecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009375 339 -FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 339 -~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
.......++|||||||++|...+..++..+|++|||||+..+. ...++.+++.++..++++++|||+||+|+
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~-------~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-------PQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS-------SCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC-------CcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 0112368999999999999999999999999999999999872 25799999999999998779999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCCCCCCCee
Q 009375 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPLL 496 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~~~~~P~~ 496 (536)
.. .+...+..+++..+++..+. ..++++++||++|+|+.+ |+++|.. ++++.+..++|++
T Consensus 142 ~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi~~---------------L~~~l~~~l~~~~~~~~~~~~ 202 (403)
T 3sjy_A 142 VS--KEEALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINIDS---------------LIEGIEEYIKTPYRDLSQKPV 202 (403)
T ss_dssp SC--HHHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH---------------HHHHHHHHSCCCCCCTTSCCE
T ss_pred cc--hHHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcChHH---------------HHHHHHHhCCCCCCCCCCCcE
Confidence 84 34445556667777765554 356899999999999974 9999965 7878888899999
Q ss_pred EEEEEEEEeC---------CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 497 MPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 497 ~~I~d~~~~~---------~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
|+|.++|.+. +|+| ++|+|.+|+|++||+|.++|++
T Consensus 203 ~~v~~~~~v~~~~~~~~~~~G~v-~~g~v~~G~~~~gd~v~~~p~~ 247 (403)
T 3sjy_A 203 MLVIRSFDVNKPGTQFNELKGGV-IGGSIIQGLFKVDQEIKVLPGL 247 (403)
T ss_dssp EEEEEEECCCCTTCCSSSCCCCE-EEEEEEESCEETTCEEEEEEEE
T ss_pred EEEEEEEeecCCCcccccCcCcE-EEEEEEeCEEecCCEEEEeCCc
Confidence 9999998753 5788 8999999999999999999975
No 16
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.96 E-value=1.2e-29 Score=266.38 Aligned_cols=198 Identities=20% Similarity=0.246 Sum_probs=165.6
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+++|++|+|||||+++|+ .+|+|++..+..+++.+..++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999997 267888888888888999999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe-cccccccchhHHH
Q 009375 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFD 426 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN-KiDl~~~~~e~~e 426 (536)
|||||||++|...+..+++.+|++||||| ..+ +..|+++++.++..+++|.+|||+| |+|+ . .+.++
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g--------~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~--~~~~~ 131 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQG--------LDAHTGECIIALDLLGFKHGIIALTRSDST-H--MHAID 131 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC--------CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C--HHHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC--------CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C--HHHHH
Confidence 99999999999999999999999999999 766 5689999999999999995599999 9999 3 44556
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEE--EEccc---CCCcccCCCCcccccccchhhHHHHHHhcCC-C---CCC-CCCCee
Q 009375 427 SIKVQLGTFLRSCGFKDASLTWIP--LSALE---NQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-P---PRE-FSKPLL 496 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vip--vSA~~---GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~-~---~~~-~~~P~~ 496 (536)
++.+++..+++..++ ..+++++ +||++ |+|+.+ |+++|....+ + ... ...|++
T Consensus 132 ~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi~~---------------L~~~l~~~~~~~~~~~~~~~~~p~r 194 (370)
T 2elf_A 132 ELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGVDE---------------LKARINEVAEKIEAENAELNSLPAR 194 (370)
T ss_dssp HHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTHHH---------------HHHHHHHHHHHHHHHHHHGGGSCCE
T ss_pred HHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCHHH---------------HHHHHHhhccccccCCccccccccc
Confidence 667788888877665 3468999 99999 999875 6666633221 1 112 456788
Q ss_pred EEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 497 ~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
++|.++|+++ .|++ ++|+|++|+|++||.|.++|.+.
T Consensus 195 ~~v~~vf~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~ 232 (370)
T 2elf_A 195 IFIDHAFNVTGKGCV-VLGVVKQGISKDKDKTKIFPLDR 232 (370)
T ss_dssp EEEEEEECCC---CE-EEEEEEESEEETTCEEEEETTTE
T ss_pred ccceeEEEcCCCceE-EEEEEECCEEeeCCEEEECCCCc
Confidence 9999999999 9998 79999999999999999999863
No 17
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.96 E-value=2.7e-28 Score=270.30 Aligned_cols=222 Identities=27% Similarity=0.418 Sum_probs=160.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC--
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 342 (536)
+.+||+|+||+|+|||||+++|++..+.+....+ -.+.++....|+++|+|+......+.+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKAS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEecC
Confidence 4689999999999999999999987766544321 1356788888999999998766666443
Q ss_pred ---CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009375 343 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ---~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
.+.++|||||||.+|...+..+++.+|++|||||++.+ ...++.+++..+...++| +|+|+||+|+..
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g--------v~~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG--------VEAQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC--------CCTHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 47899999999999999999999999999999999987 456888888888888997 999999999986
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCeeEE
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 498 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~~ 498 (536)
+. .+++.+++... +++.. .+++++||++|.|+.+ |+++| ..+++|....+.|+++.
T Consensus 138 a~---~~~v~~ei~~~---lg~~~--~~vi~vSAktg~GI~~---------------Ll~~I~~~lp~p~~~~~~p~~al 194 (599)
T 3cb4_D 138 AD---PERVAEEIEDI---VGIDA--TDAVRCSAKTGVGVQD---------------VLERLVRDIPPPEGDPEGPLQAL 194 (599)
T ss_dssp CC---HHHHHHHHHHH---TCCCC--TTCEEECTTTCTTHHH---------------HHHHHHHHSCCCCCCTTSCCEEE
T ss_pred cc---HHHHHHHHHHH---hCCCc--ceEEEeecccCCCchh---------------HHHHHhhcCCCccccccCCceee
Confidence 43 23334444443 35432 2579999999999975 88988 56777777888999999
Q ss_pred EEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009375 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 499 I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
|.+++..+ .|.+ +.|+|.+|+|++||+|.++|++.+
T Consensus 195 I~d~~~d~~~G~v-~~~rV~sG~l~~Gd~v~~~~~~~~ 231 (599)
T 3cb4_D 195 IIDSWFDNYLGVV-SLIRIKNGTLRKGDKVKVMSTGQT 231 (599)
T ss_dssp EEEEEEETTTEEE-EEEEEEESCEESSCEEEETTTCCE
T ss_pred eeeccccccccEE-EEEEEEeCEEecCCEEEeccccce
Confidence 99999999 8988 799999999999999999998653
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.96 E-value=1.3e-28 Score=272.55 Aligned_cols=222 Identities=31% Similarity=0.408 Sum_probs=163.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+.+||+|+||+|+|||||+++|++..+.+....+ -.+.+|....|+++|+|+......+.+.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 45789999999999999999999977665543321 1356788888999999987554444332
Q ss_pred ----CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009375 343 ----NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ----~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.+.++|||||||.+|...+..+++.+|++|||||++.| ...++.+++.++...++| +|+|+||+|+.
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g--------v~~qt~~~~~~a~~~~ip-iIvviNKiDl~ 138 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG--------IEAQTVANFWKAVEQDLV-IIPVINKIDLP 138 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB--------CCHHHHHHHHHHHHTTCE-EEEEEECTTST
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHCCCC-EEEEEeccCcc
Confidence 47899999999999999999999999999999999987 467888988888889998 99999999998
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCeeE
Q 009375 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLM 497 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~ 497 (536)
.+. .+++.+++... +++.. .+++++||++|.|+.+ ||++| ..+++|....+.||++
T Consensus 139 ~a~---~~~v~~el~~~---lg~~~--~~vi~vSAktg~GI~~---------------Lle~I~~~lp~p~~~~~~pl~~ 195 (600)
T 2ywe_A 139 SAD---VDRVKKQIEEV---LGLDP--EEAILASAKEGIGIEE---------------ILEAIVNRIPPPKGDPQKPLKA 195 (600)
T ss_dssp TCC---HHHHHHHHHHT---SCCCG--GGCEECBTTTTBSHHH---------------HHHHHHHHSCCCCCCTTSCCEE
T ss_pred ccC---HHHHHHHHHHh---hCCCc--ccEEEEEeecCCCchH---------------HHHHHHHhcccccccccCCcce
Confidence 543 23334444433 35422 2579999999999975 89987 5677777778999999
Q ss_pred EEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 498 ~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
.|.+++..+ .|.+ +.|||.+|+|++||.|+++|++.
T Consensus 196 lV~~~~~d~~~G~v-~~~rV~sG~l~~Gd~I~~~~~~~ 232 (600)
T 2ywe_A 196 LIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIMLMSTGK 232 (600)
T ss_dssp EEEEEEEETTTEEE-EEEEEEESEECTTCEEEETTTTE
T ss_pred eEEEEeecccceEE-EEEEEEeCEEecCCEEEeccccc
Confidence 999999998 8988 89999999999999999999764
No 19
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.96 E-value=7.9e-29 Score=272.52 Aligned_cols=238 Identities=27% Similarity=0.342 Sum_probs=168.8
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
+..+.+||+|+||+++|||||+.+|+...+.+... +....+.. .-...+|....|++||||+......+.+
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~-------G~V~~~~~--~~~~~~D~~~~EreRGITI~s~~~~~~~ 97 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMA-------GSVKARKA--ARHATSDWMAMERERGISVTTSVMQFPY 97 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHH-------HHHHHC----------------------CTTTEEEEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCccccc-------ceeecCcc--ccccccCChHHHHHCCCcEeeceEEEEE
Confidence 44578999999999999999999999888876432 11222211 1124689999999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
+++.|+|||||||.+|...+.++++.+|++|+||||..| ++.||+.++.++...++| +|++|||||+...+
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G--------V~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--------VEAQTRKLMDVCRMRATP-VMTFVNKMDREALH 168 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCC
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC--------cccccHHHHHHHHHhCCc-eEEEEecccchhcc
Confidence 999999999999999999999999999999999999998 689999999999999999 89999999997654
Q ss_pred hh-HHHHHHHHHHH------------------------------------------------------------------
Q 009375 422 KD-RFDSIKVQLGT------------------------------------------------------------------ 434 (536)
Q Consensus 422 ~e-~~eei~~~L~~------------------------------------------------------------------ 434 (536)
.. .++++.+.+..
T Consensus 169 ~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (548)
T 3vqt_A 169 PLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDL 248 (548)
T ss_dssp HHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHH
T ss_pred hhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHH
Confidence 32 23333332210
Q ss_pred -HHHHcC--------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHH-hcCCCCC---------CCCCCe
Q 009375 435 -FLRSCG--------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR---------EFSKPL 495 (536)
Q Consensus 435 -~l~~~g--------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~-~l~~~~~---------~~~~P~ 495 (536)
++...+ .....+|++..||+++.|+.. ||++|. .+|.|.. ..+.||
T Consensus 249 ~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~---------------LLd~iv~~~PsP~~~~~~~~~~~~~~~p~ 313 (548)
T 3vqt_A 249 ALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVRE---------------MLDMFVEFAPGPQPRPAATRVVEPGEEAF 313 (548)
T ss_dssp HHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHH---------------HHHHHHHHSCCSCCEEBSSSEECTTCSSC
T ss_pred HHHhhccCchhHHHHHhCCcceeeecccccCcCHHH---------------HHHHHHHhCCCCCCccccccccCCCCcCc
Confidence 000000 011235788899999999974 999994 4665532 236799
Q ss_pred eEEEEEEEEe---C-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 496 LMPICDVLKS---Q-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 496 ~~~I~d~~~~---~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
...|+.++.. + .|.+ +.+||++|+|++|++|++...+
T Consensus 314 ~a~vfKi~~~~~~~~~Grl-a~~RV~sG~l~~g~~v~~~~~~ 354 (548)
T 3vqt_A 314 TGVVFKIQANMDKAHRDRM-AFLRICSGTFTRGMRLKHHRTG 354 (548)
T ss_dssp EEEEEEEECC-------CE-EEEEEEESCEETTCEEEETTTT
T ss_pred eEEEEEEEccCCcCCCCeE-EEEEEecceecCCCEEEeeccc
Confidence 9999988765 5 8988 7899999999999999986554
No 20
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.95 E-value=4.2e-29 Score=279.43 Aligned_cols=231 Identities=26% Similarity=0.366 Sum_probs=185.2
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.+||+|+||++||||||+.+|++..+.+....- .. .+ ...+|....|++||||+......+.++++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~-------v~--~g----~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGS-------VD--KG----TTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSS-------CC--CS----CCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccc-------cc--cC----CcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 4679999999999999999999988887754310 01 11 24689999999999999999999999999
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhH
Q 009375 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.|+|||||||.+|..++.++++.+|++|+||||..| ++.||+.++.++...++| .|++|||||+...+...
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G--------V~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~~ 138 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG--------VQAQTRILFHALRKMGIP-TIFFINKIDQNGIDLST 138 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT--------TCSHHHHHHHHHHHHTCS-CEECCEECCSSSCCSHH
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCC-eEEEEeccccccCCHHH
Confidence 999999999999999999999999999999999998 689999999999999999 68999999987644321
Q ss_pred -HHHHHHHH--------------------------------------HHHHHHcCCC--------------CCCccEEEE
Q 009375 425 -FDSIKVQL--------------------------------------GTFLRSCGFK--------------DASLTWIPL 451 (536)
Q Consensus 425 -~eei~~~L--------------------------------------~~~l~~~g~~--------------~~~i~vipv 451 (536)
++++.+.+ ..++....+. ...+|++..
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 22222111 1111111100 123477889
Q ss_pred EcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEE
Q 009375 452 SALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCN 529 (536)
Q Consensus 452 SA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v 529 (536)
||+++.|+.. ||++| ..+|+|......||.+.|+++...+ .|.+ +.+||++|+|++||.|.+
T Consensus 219 Sa~~~~Gv~~---------------LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~l-a~~RV~sG~l~~g~~v~~ 282 (638)
T 3j25_A 219 SAKSNIGIDN---------------LIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRL-AYIRLYSGVLHLRDSVRV 282 (638)
T ss_dssp CSTTCCSHHH---------------HHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCC-CBCCBSSBCCCSCCCSSS
T ss_pred ccccCCCchh---------------HhhhhhccccCcccchhhhhcceeeeeeeeccCceE-EEEEEEcCcccCCCcccc
Confidence 9999999974 99998 5577777777899999999998888 8988 789999999999999987
Q ss_pred ecCC
Q 009375 530 FLTR 533 (536)
Q Consensus 530 ~p~~ 533 (536)
...+
T Consensus 283 ~~~~ 286 (638)
T 3j25_A 283 SEKE 286 (638)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 6544
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.94 E-value=1.3e-26 Score=262.27 Aligned_cols=232 Identities=29% Similarity=0.369 Sum_probs=161.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+.+||+|+||+++|||||+.+|+...+.+.... ....+ ...+|....|++||||+......+.+.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g-------~v~~~------~~~~D~~~~E~eRGITI~s~~~s~~~~~ 77 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG-------EVHDG------AATTDWMVQEQERGITITSAAVTTFWKG 77 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc-------eecCC------CccCCChHHHHHcCCeEEeeeEEEEecc
Confidence 5678999999999999999999998776543210 01111 246899999999999998777776553
Q ss_pred ------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009375 343 ------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 343 ------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
++.|+|||||||.+|..++.++++.+|++|+||||.+| ++.||+.+++++...++| .|++|||||
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG--------V~~qT~~v~~~a~~~~lp-~i~~iNKiD 148 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG--------VEPQSETVWRQANKYGVP-RIVYVNKMD 148 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHHTCC-EEEEEECSS
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC--------CchhHHHHHHHHHHcCCC-eEEEEcccc
Confidence 68999999999999999999999999999999999998 689999999999999999 799999999
Q ss_pred ccccchh-HHHHHHHHHH--------------------------------------------------------------
Q 009375 417 AVQYSKD-RFDSIKVQLG-------------------------------------------------------------- 433 (536)
Q Consensus 417 l~~~~~e-~~eei~~~L~-------------------------------------------------------------- 433 (536)
+...+.. .++++...+.
T Consensus 149 r~~a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 228 (709)
T 4fn5_A 149 RQGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEA 228 (709)
T ss_dssp STTCCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHH
Confidence 8653321 1222211110
Q ss_pred ----------HHHHHcC--------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCC
Q 009375 434 ----------TFLRSCG--------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPP 488 (536)
Q Consensus 434 ----------~~l~~~g--------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~ 488 (536)
.++.... .....+|++..||+++.|+. .||++| +.+|.|.
T Consensus 229 ~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~---------------~lLd~i~~~lPsP~ 293 (709)
T 4fn5_A 229 AAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVP---------------LVLDAVIDYLPAPT 293 (709)
T ss_dssp HHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHH---------------HHHHHHHHHSCCTT
T ss_pred HHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchH---------------HHHHHHHhhCCCCc
Confidence 0010000 11123467888999998886 399998 5566663
Q ss_pred --------------------CCCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 489 --------------------REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 489 --------------------~~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
.+.++||.+.|++++..+ .|.+ +.|||++|+|++||+|++...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~l-a~~RV~sGtl~~G~~v~~~~~~ 358 (709)
T 4fn5_A 294 EIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTL-TFARVYSGVLSSGDSVLNSVKG 358 (709)
T ss_dssp SSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCC-CEEEEEESCEETTCBCBCTTTC
T ss_pred ccccccccCCccccccccccCCccCcceEEEEEeecccCCCce-EEEeccCCCCCCCCEEEEecCC
Confidence 245789999999999888 8988 7999999999999999865544
No 22
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.94 E-value=1.8e-27 Score=258.43 Aligned_cols=205 Identities=26% Similarity=0.296 Sum_probs=160.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.++++|+|+||+|+|||||+++|++.... ....+|+|++.....+.+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-------------------------------~~e~~GIT~~i~~~~v~~~~ 50 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-------------------------------SGEAGGITQHIGAYHVETEN 50 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS-------------------------------BTTBCCCCCCSSCCCCCTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc-------------------------------cccCCCeeEeEEEEEEEECC
Confidence 35688999999999999999999842110 01125667666666667778
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..++|||||||++|...+..++..+|++|||||++.| .+.|+.+++.++...++| +|||+||+|+..++.+
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g--------~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~ 121 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG--------VMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD 121 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB--------SCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC--------ccHHHHHHHHHHHhcCce-EEEEEEeccccccCHH
Confidence 8899999999999999999999999999999999987 467899999999999998 9999999999864332
Q ss_pred HHHHHHHHHHHHHHHcCCCC----CCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh---cCCCCCCCCCCee
Q 009375 424 RFDSIKVQLGTFLRSCGFKD----ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLL 496 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~----~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~---l~~~~~~~~~P~~ 496 (536)
++ ... +...++.. ..++++++||++|+|+.+ |++.|.. ++.+......|+.
T Consensus 122 ~v---~~~----l~~~~~~~~~~~~~~~~v~vSAktG~gI~e---------------Lle~I~~~~~~~~~~~~~~~~~~ 179 (501)
T 1zo1_I 122 RV---KNE----LSQYGILPEEWGGESQFVHVSAKAGTGIDE---------------LLDAILLQAEVLELKAVRKGMAS 179 (501)
T ss_dssp CT---TCC----CCCCCCCTTCCSSSCEEEECCTTTCTTCTT---------------HHHHTTTTCCCSTTTSCCCSBCE
T ss_pred HH---HHH----HHHhhhhHHHhCCCccEEEEeeeeccCcch---------------hhhhhhhhhhhhccccccccccc
Confidence 21 111 11111111 136899999999999986 8888743 2334455678999
Q ss_pred EEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEec
Q 009375 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFL 531 (536)
Q Consensus 497 ~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p 531 (536)
+.|.+++..+ .|.+ ++|+|.+|+|++||.|++.+
T Consensus 180 ~~V~e~~~d~g~G~v-~~~~V~~Gtlk~Gd~v~~g~ 214 (501)
T 1zo1_I 180 GAVIESFLDKGRGPV-ATVLVREGTLHKGDIVLCGF 214 (501)
T ss_dssp EEEEEEEECSSSSEE-EEEEEEESBCCTTCEEEEEB
T ss_pred cceEEEEEeCCcEEE-EEEEEEeeEEecCCEEEEcc
Confidence 9999999998 9998 89999999999999998765
No 23
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.94 E-value=4e-26 Score=252.99 Aligned_cols=214 Identities=24% Similarity=0.357 Sum_probs=157.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee---
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--- 340 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~--- 340 (536)
++.++|+|+||+|+|||||+++|++....... .+|+|.++....+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e-------------------------------~ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASRE-------------------------------AGGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----------------------------------CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCcccc-------------------------------CCceecccCeEEEeech
Confidence 45789999999999999999999853211000 01222221111111
Q ss_pred ---------------cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC
Q 009375 341 ---------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (536)
Q Consensus 341 ---------------~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v 405 (536)
.....++|||||||.+|...+.++++.+|++|||+|++.| ++.++.+++.+++..++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G--------v~~qT~e~l~~l~~~~v 123 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYRT 123 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCC
Confidence 1223699999999999999999999999999999999987 57899999999999999
Q ss_pred CcEEEEEecccccc-cch------------------hHHHHHHHHHHHHHHHcCCC----------CCCccEEEEEcccC
Q 009375 406 DQLIVAVNKMDAVQ-YSK------------------DRFDSIKVQLGTFLRSCGFK----------DASLTWIPLSALEN 456 (536)
Q Consensus 406 p~vIVVINKiDl~~-~~~------------------e~~eei~~~L~~~l~~~g~~----------~~~i~vipvSA~~G 456 (536)
| +|||+||+|+.. +.. ..+.+...++...|...++. ...++++++||++|
T Consensus 124 P-iIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 124 P-FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp C-EEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred e-EEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 8 999999999974 211 12333333444445544542 23458999999999
Q ss_pred CCcccCCCCcccccccchhhHHHHHHhc----CC--CCCCCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEE
Q 009375 457 QNLVTAPDDGRLLSWYKGPCLLDAIDSL----RP--PPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCN 529 (536)
Q Consensus 457 enI~e~~~~~~~~~Wy~g~tLle~L~~l----~~--~~~~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v 529 (536)
+|+.+ |+++|..+ .+ .....+.|+++.|.+++..+ .|.+ ++|+|.+|+|++||.|++
T Consensus 203 ~GI~e---------------Ll~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v-~~~rV~~G~Lk~Gd~v~~ 266 (594)
T 1g7s_A 203 EGIPE---------------LLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMT-IDAVIYDGILRKDDTIAM 266 (594)
T ss_dssp TTHHH---------------HHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEE-EEEEEEESEEETTCEEEE
T ss_pred CCchh---------------HHHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEE-EEEEEeeCEEeeCCEEEE
Confidence 99985 77776432 11 12245789999999999998 8988 799999999999999999
Q ss_pred ecCC
Q 009375 530 FLTR 533 (536)
Q Consensus 530 ~p~~ 533 (536)
+|.+
T Consensus 267 ~~~~ 270 (594)
T 1g7s_A 267 MTSK 270 (594)
T ss_dssp EBSS
T ss_pred CCCC
Confidence 9875
No 24
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.93 E-value=7.9e-26 Score=247.61 Aligned_cols=237 Identities=26% Similarity=0.340 Sum_probs=174.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++..+.+.... ....++. .-....+....++.+|+|+......+.+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g-------~v~~~~~--~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 81 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAG-------TIKSRKA--ARHATSDWMELEKQRGISVTTSVMQFPYKD 81 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHH-------HHHTC------CCHHHHHHHHHHHCCSSSSSEEEEEETT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccce-------eeecccc--ccceecccchhhhcCCeeEEEeEEEEEeCC
Confidence 4578999999999999999999997776652211 1111110 001234556667789999988888888899
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch-
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK- 422 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~- 422 (536)
..++|||||||.+|...+..+++.+|++|+|||+..+ ...++..++..+...++| +|+|+||+|+.....
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g--------~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~~ 152 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG--------VEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPSI 152 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCHH
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCCccccHH
Confidence 9999999999999999999999999999999999987 467888888888889998 999999999975332
Q ss_pred hHHHHHHHHHHH-------------------------------------------------------------HHH----
Q 009375 423 DRFDSIKVQLGT-------------------------------------------------------------FLR---- 437 (536)
Q Consensus 423 e~~eei~~~L~~-------------------------------------------------------------~l~---- 437 (536)
..++++.+.+.. ++.
T Consensus 153 ~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l 232 (528)
T 3tr5_A 153 ELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIEL 232 (528)
T ss_dssp HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcch
Confidence 222333222210 000
Q ss_pred --Hc--------CCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCCC---------CCCCeeE
Q 009375 438 --SC--------GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSKPLLM 497 (536)
Q Consensus 438 --~~--------g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~~---------~~~P~~~ 497 (536)
.. -.....+|++++||++|.||.+ ||++|.. +|+|... .+.||..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~---------------Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~ 297 (528)
T 3tr5_A 233 VKGASHPFEREGYLKGELTPIFFGSAINNFGVGE---------------LLDAFVKEAPPPQGRETNSRLVKPEEEKFSG 297 (528)
T ss_dssp HHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHH---------------HHHHHHHHSCCCCCBCBSSSCBCTTSSSCEE
T ss_pred hhhhhhHHHHHHHhcCceeEEEeccccCCccHHH---------------HHHHHHHhCCCCCcccccceeeCCCccccee
Confidence 00 0011223789999999999975 9999855 5555322 2589999
Q ss_pred EEEEEEE--eC--CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 498 PICDVLK--SQ--HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 498 ~I~d~~~--~~--~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
.|+++.. .+ +|.+ +.+||.+|+|++|+.|++.+.++
T Consensus 298 ~VFKi~~~~dp~~~g~l-~~~RV~sG~l~~g~~v~~~~~~~ 337 (528)
T 3tr5_A 298 FVFKIQANMDPGHRDRI-AFLRIASGQYQKGMKAYHVRLKK 337 (528)
T ss_dssp EEEEEEECCC-CCCCEE-EEEEEEESCEETTEEEEETTTTE
T ss_pred EEEEEecccCccCCceE-EEEEEecCeEcCCCEEEecCCCc
Confidence 9999874 33 7988 79999999999999999988764
No 25
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.92 E-value=3.9e-27 Score=257.75 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=156.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-CC
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 343 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 343 (536)
++++|+|+|++|+|||||+++|++..... ...+|+|.+.....+.. .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-------------------------------~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-------------------------------MEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-------------------------------SSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-------------------------------ccCCceeEEEeEEEEEeCCC
Confidence 46789999999999999999998532111 11234554444334444 45
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..++|||||||++|...+..++..+|++|||+|+..+ ...++.+++.++...++| +|||+||+|+......
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg--------~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~ 122 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG--------VMKQTVESIQHAKDAHVP-IVLAINKCDKAEADPE 122 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC--------CCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCC
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEecccccccchH
Confidence 6799999999999999999999999999999999987 568999999999999998 9999999999854433
Q ss_pred HHHHHHHHHHHH---HHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh---cCCCCCCCCCCeeE
Q 009375 424 RFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLLM 497 (536)
Q Consensus 424 ~~eei~~~L~~~---l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~---l~~~~~~~~~P~~~ 497 (536)
.+. ..+..+ +..++ ..++++++||++|+|+.+ |++.|.. .+.+......|+++
T Consensus 123 ~v~---~~l~~~~~~~e~~~---~~~~iv~vSAktG~GI~e---------------Lle~I~~l~~~~~~~~~~~~~~~~ 181 (537)
T 3izy_P 123 KVK---KELLAYDVVCEDYG---GDVQAVHVSALTGENMMA---------------LAEATIALAEMLELKADPTGAVEG 181 (537)
T ss_dssp SSS---SHHHHTTSCCCCSS---SSEEECCCCSSSSCSSHH---------------HHHHHHHHHTTCCCCCCSSSSEEE
T ss_pred HHH---HHHHhhhhhHHhcC---CCceEEEEECCCCCCchh---------------HHHHHHHhhhcccccCCCCCCcce
Confidence 221 222221 11111 245899999999999986 7777633 34445567899999
Q ss_pred EEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEe
Q 009375 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNF 530 (536)
Q Consensus 498 ~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~ 530 (536)
+|.+++..+ .|++ ++|+|.+|+|++||.|+..
T Consensus 182 ~V~e~~~~~g~G~V-~~g~V~~G~l~~Gd~v~~g 214 (537)
T 3izy_P 182 TVIESFTDKGRGPV-TTAIIQRGTLRKGSILVAG 214 (537)
T ss_dssp EEEEECCCTTCCCC-EEEEEEEECCSSEEEECCS
T ss_pred eEEEEEEeCCCceE-EEEEEecCEEEcCCEEEeC
Confidence 999999998 9998 7999999999999987544
No 26
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.92 E-value=4.8e-25 Score=241.47 Aligned_cols=234 Identities=22% Similarity=0.275 Sum_probs=156.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++..+.+..... ...++. .-...++....++.+|+|+......+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~-------v~~~~~--~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGT-------VKGRGS--NQHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccce-------eecCcc--ccceeeccchhcccCCcceeeeEEEEEECC
Confidence 45789999999999999999999976554422110 000000 001245666778899999888888888899
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..++|||||||.+|...+..+++.+|++|+|||+..+ ...++.+++.++...++| +|+|+||+|+.....
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g--------~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~- 151 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG--------VEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP- 151 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc--------chHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-
Confidence 9999999999999999999999999999999999987 457888998888888998 999999999975432
Q ss_pred HHHHHHHHHHHHHHHc--------------------------------CC------------------------------
Q 009375 424 RFDSIKVQLGTFLRSC--------------------------------GF------------------------------ 441 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~--------------------------------g~------------------------------ 441 (536)
.++.+++...+... |.
T Consensus 152 --~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e 229 (529)
T 2h5e_A 152 --MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRD 229 (529)
T ss_dssp --HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhc
Confidence 12223333322100 00
Q ss_pred ------------------CCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCCC---------CCC
Q 009375 442 ------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSK 493 (536)
Q Consensus 442 ------------------~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~~---------~~~ 493 (536)
....+|+++.||++|.||. .||++|.. +|+|... .+.
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~---------------~LLd~i~~~~P~P~~~~~~~~~~~~~~~ 294 (529)
T 2h5e_A 230 ELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVD---------------HMLDGLVEWAPAPMPRQTDTRTVEASED 294 (529)
T ss_dssp HHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHH---------------HHHHHHHHHSCSSCCEEBSSCEECTTCC
T ss_pred ccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHH---------------HHHHHHHHhCCCCCcccccccccCCCCC
Confidence 0012355666666666664 49999965 4544321 147
Q ss_pred CeeEEEEEEEE---eC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 494 PLLMPICDVLK---SQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 494 P~~~~I~d~~~---~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
||...|+++.. .+ +|.+ +.|||.+|+|++|++|++.|.++
T Consensus 295 ~~~~~vfKi~~~~d~~~~G~i-~~~RV~sG~l~~g~~v~~~~~~~ 338 (529)
T 2h5e_A 295 KFTGFVFKIQANMDPKHRDRV-AFMRVVSGKYEKGMKLRQVRTAK 338 (529)
T ss_dssp SCEEEEEEECSSCCSSSSCCC-EEEEEEESCEETTCEEEETTTTE
T ss_pred CeEEEEEEEeeccCcCCCceE-EEEEEecCeEcCCCEEEEeeCCC
Confidence 88888888764 34 7998 79999999999999999988753
No 27
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.92 E-value=1.9e-24 Score=244.14 Aligned_cols=230 Identities=26% Similarity=0.317 Sum_probs=176.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+||+|+|||||+++|++..+.+.... .. ..+ ...+|....|+.+|+|+......+.+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g-------~v--~~g----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 74 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG-------EV--HDG----AATMDWMEQEQERGITITSAATTAFWSG 74 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc-------cc--CCC----ceeecChhhHHhcCceeeeceEEEEECC
Confidence 4578999999999999999999997655443211 00 011 2456777788899999988877777766
Q ss_pred -------eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009375 344 -------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 344 -------~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
+.++|||||||.+|...+..+++.+|++|+|||++.+ ...++..++.++...++| +|+|+||+|
T Consensus 75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 75 MAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG--------VQPQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred ccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 8999999999999999999999999999999999987 456888888888888998 899999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHc---------------------------------C-----------------------
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSC---------------------------------G----------------------- 440 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~---------------------------------g----------------------- 440 (536)
+.... ++++.+++...+... |
T Consensus 146 ~~~~~---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 222 (704)
T 2rdo_7 146 RMGAN---FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNL 222 (704)
T ss_pred ccccc---HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHH
Confidence 87543 233333333332110 0
Q ss_pred ----------------------------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHH-hcC
Q 009375 441 ----------------------------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLR 485 (536)
Q Consensus 441 ----------------------------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~-~l~ 485 (536)
.....+|++..||++|.|+. .||++|. .+|
T Consensus 223 ~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~---------------~LLd~i~~~lP 287 (704)
T 2rdo_7 223 IESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ---------------AMLDAVIDYLP 287 (704)
T ss_pred HHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHH---------------HHHHHHHHHCC
Confidence 00112578888999999986 4999984 466
Q ss_pred CCCC--------------------CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009375 486 PPPR--------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 486 ~~~~--------------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
+|.. +.++||.+.|++++..+ .|.+ +.|||++|+|++||+|++.+.++
T Consensus 288 sP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~-~~~RV~sG~l~~g~~v~~~~~~~ 356 (704)
T 2rdo_7 288 SPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNL-TFFRVYSGVVNSGDTVLNSVKAA 356 (704)
T ss_pred ChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceE-EEEEEEeeeecCCCEEEeCCCCc
Confidence 5532 14689999999999999 8998 79999999999999999877653
No 28
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.92 E-value=2e-24 Score=243.54 Aligned_cols=230 Identities=28% Similarity=0.339 Sum_probs=161.6
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|++|+|||||+++|++..+.+.... ....+ ...++....++.+|+|+......+.+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g-------~v~~~------~~~~d~~~~E~~~giTi~~~~~~~~~~ 75 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIG-------EVHEG------AATMDFMEQERERGITITAAVTTCFWK 75 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccc-------eecCC------ceeccCchhhhhcccccccceEEEEEC
Confidence 45679999999999999999999996655432211 00000 235677778888999998888888888
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..++|||||||.+|...+..+++.+|++|+|||+..+ ...++..++..+...++| +|+|+||+|+....
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g--------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~- 145 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG--------VEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD- 145 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC--------cchhhHHHHHHHHHcCCC-EEEEEECCCcccCC-
Confidence 99999999999999999999999999999999999987 456778888888888998 89999999997532
Q ss_pred hHHHHHHHHHHHHHHH----------------------------------------------------------------
Q 009375 423 DRFDSIKVQLGTFLRS---------------------------------------------------------------- 438 (536)
Q Consensus 423 e~~eei~~~L~~~l~~---------------------------------------------------------------- 438 (536)
+.++.+++...+..
T Consensus 146 --~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~ 223 (691)
T 1dar_A 146 --LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADF 223 (691)
T ss_dssp --HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTT
T ss_pred --HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhC
Confidence 22233333332210
Q ss_pred -----------cC--------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHH-hcCCCCC---
Q 009375 439 -----------CG--------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR--- 489 (536)
Q Consensus 439 -----------~g--------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~-~l~~~~~--- 489 (536)
.. .....+|+++.||++|.|+.. ||++|. .+|+|..
T Consensus 224 dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~lPsP~~~~~ 288 (691)
T 1dar_A 224 DENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQL---------------LLDAVVDYLPSPLDIPP 288 (691)
T ss_dssp CHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHH---------------HHHHHHHHSCCTTTSCC
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHH---------------HHHHHHHhCCChhhccc
Confidence 00 001125788999999999864 999985 4666543
Q ss_pred ---------------CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 490 ---------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 490 ---------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+.+.||.+.|++++..+ .|.+ +.|||++|+|++||+|+..+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~-~~~RV~sG~l~~g~~v~~~~~~ 347 (691)
T 1dar_A 289 IKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKG 347 (691)
T ss_dssp EEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEE-EEEEEEESEEESSCEEEETTTT
T ss_pred ccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcE-EEEEEeeeeEecCCEEEecCCC
Confidence 25789999999999999 8998 7999999999999999976653
No 29
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=1.2e-23 Score=237.40 Aligned_cols=228 Identities=28% Similarity=0.365 Sum_probs=160.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++..+.+..... ... + ...++....++.+|+|+......+.+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~-------v~~--~----~~~~D~~~~e~~~giTi~~~~~~~~~~~ 74 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE-------THE--G----ASQMDWMEQEQDRGITITSAATTAAWEG 74 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc-------ccC--C----ceecccchhhhhcCceEeeeeEEEEECC
Confidence 45789999999999999999999976554422110 000 0 1345666778889999988777788889
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..++|||||||.+|...+..+++.+|++|||||+..+ ...++..++..+...++| +|+|+||+|+....
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g--------~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-- 143 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG--------VEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN-- 143 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC--------CcHHHHHHHHHHHHcCCC-EEEEEECCCccccc--
Confidence 9999999999999999999999999999999999987 456777888888888888 89999999997532
Q ss_pred HHHHHHHHHHHHHHHc--------------------------------C-------------------------------
Q 009375 424 RFDSIKVQLGTFLRSC--------------------------------G------------------------------- 440 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~--------------------------------g------------------------------- 440 (536)
+.++.+.+...+... +
T Consensus 144 -~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~d 222 (693)
T 2xex_A 144 -FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETS 222 (693)
T ss_dssp -HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 223333343333110 0
Q ss_pred --------------------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHH-hcCCCCC----
Q 009375 441 --------------------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR---- 489 (536)
Q Consensus 441 --------------------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~-~l~~~~~---- 489 (536)
.....+|++..||++|.|+. .||++|. .+|+|..
T Consensus 223 d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~---------------~LLd~i~~~lPsP~~~~~~ 287 (693)
T 2xex_A 223 DELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQ---------------LMLDAVIDYLPSPLDVKPI 287 (693)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHH---------------HHHHHHHHHSCCGGGSCCE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHH---------------HHHHHHHHHCCCchhcccc
Confidence 00012467888888888886 4999984 5665533
Q ss_pred ----------------CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009375 490 ----------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 490 ----------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
+.+.||.+.|++++..+ .|.+ +.|||++|+|++||+|+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~-~~~RV~sG~l~~g~~v~~~~~ 346 (693)
T 2xex_A 288 IGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKL-TFFRVYSGTMTSGSYVKNSTK 346 (693)
T ss_dssp EEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEE-EEEEEEESEEETTEEEEETTT
T ss_pred cccCCCccccceeecCCCCCceEEEEEEeeecCCCceE-EEEEEEeeeEecCCEEEecCC
Confidence 25789999999999999 8988 799999999999999987644
No 30
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.91 E-value=8.6e-24 Score=237.50 Aligned_cols=226 Identities=25% Similarity=0.296 Sum_probs=172.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+..+|+|+|++|+|||||+++|++..+.+.... ....+ ...++....++.+|+++......+.+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-------~V~~g------~~~~d~~~~e~~~giti~~~~~~~~~~~ 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-------RVEEG------TTTTDYTPEAKLHRTTVRTGVAPLLFRG 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-------CGGGT------CCSSCCSHHHHHTTSCCSCEEEEEEETT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-------eecCC------cccccCCHHHHhcCCeEEecceEEeeCC
Confidence 4568899999999999999999997655432211 00111 1234555667778888877777778889
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..++|||||||.+|...+..+++.+|++|+|+|+..+ +..++.+++.++...++| +|+|+||+|+. ..
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g--------~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~-- 141 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG--------VQVGTERAWTVAERLGLP-RMVVVTKLDKG-GD-- 141 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-EEEEEECGGGC-CC--
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc--------cchhHHHHHHHHHHccCC-EEEEecCCchh-hh--
Confidence 9999999999999999999999999999999999887 567888999999988998 89999999987 32
Q ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Q 009375 424 RFDSIKVQLGTFLR------------------------------------------------------------------ 437 (536)
Q Consensus 424 ~~eei~~~L~~~l~------------------------------------------------------------------ 437 (536)
++++.+++...+.
T Consensus 142 -~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~ 220 (665)
T 2dy1_A 142 -YYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLL 220 (665)
T ss_dssp -HHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2222333333221
Q ss_pred -----HcCC--------------CCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCCC-CCCCee
Q 009375 438 -----SCGF--------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE-FSKPLL 496 (536)
Q Consensus 438 -----~~g~--------------~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~~-~~~P~~ 496 (536)
...+ ....+|++++||++|.|+.+ ||++|.. +|+|... .++||.
T Consensus 221 e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~---------------Ll~~i~~~lp~p~~~~~~~p~~ 285 (665)
T 2dy1_A 221 EKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLP---------------LLELILEALPSPTERFGDGPPL 285 (665)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH---------------HHHHHHHHSCCHHHHHCSCSCE
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHH---------------HHHHHHHhCCCccccCCCCCeE
Confidence 0000 01225789999999999974 9999954 5555433 678999
Q ss_pred EEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEec
Q 009375 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFL 531 (536)
Q Consensus 497 ~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p 531 (536)
+.|++++..+ .|.+ +.|||++|+|++||+|++.+
T Consensus 286 ~~V~k~~~d~~~G~~-~~~rV~sG~l~~g~~v~~~~ 320 (665)
T 2dy1_A 286 AKVFKVQVDPFMGQV-AYLRLYRGRLKPGDSLQSEA 320 (665)
T ss_dssp EEEEEEEEETTTEEE-EEEEEEESEECTTEEEBCTT
T ss_pred EEEEEEEEcCCCCeE-EEEEEcccEEecCCEEEcCC
Confidence 9999999998 8988 79999999999999998665
No 31
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.89 E-value=1.5e-22 Score=232.79 Aligned_cols=171 Identities=27% Similarity=0.355 Sum_probs=116.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+.+||+|+||+|+|||||+++|++..+.+..... +. ...+|....|+.+|+|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~------------~~---~~~~D~~~~E~~rgiTI~~~~~~~~~~~ 81 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA------------GE---ARFTDTRKDEQERGITIKSTAISLYSEM 81 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEEC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccC------------CC---ceeecCchhhhhcceeEeeceeEEEecc
Confidence 45789999999999999999999987666544210 00 234677778888999987555444433
Q ss_pred ---------------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCc
Q 009375 343 ---------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (536)
Q Consensus 343 ---------------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~ 407 (536)
+..++|||||||.+|...+..+++.+|++|+|||+..+ ...++..++..+...++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g--------~~~qt~~~~~~~~~~~~p- 152 (842)
T 1n0u_A 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG--------VCVQTETVLRQALGERIK- 152 (842)
T ss_dssp CHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCE-
T ss_pred cccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-
Confidence 68899999999999999999999999999999999987 456777777777778887
Q ss_pred EEEEEeccccccc----c----hhHHHHHHHHHHHHHHHc-----C---CCCCCccEEEEEcccCCC
Q 009375 408 LIVAVNKMDAVQY----S----KDRFDSIKVQLGTFLRSC-----G---FKDASLTWIPLSALENQN 458 (536)
Q Consensus 408 vIVVINKiDl~~~----~----~e~~eei~~~L~~~l~~~-----g---~~~~~i~vipvSA~~Gen 458 (536)
+|+|+||+|+... + ...++++.+.+...+..+ + +.+...++...||++|++
T Consensus 153 ~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~ 219 (842)
T 1n0u_A 153 PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA 219 (842)
T ss_dssp EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccc
Confidence 8999999998731 1 223455555565555431 1 333334678889988755
No 32
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=7.9e-21 Score=175.04 Aligned_cols=151 Identities=28% Similarity=0.362 Sum_probs=104.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++....... .++++.+.....+...+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE-------------------------------AGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS-------------------------------CCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCC-------------------------------CCceeEeeeEEEEEeCC
Confidence 45789999999999999999999853221100 11122222222344567
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.||||||+.+|...+..++..+|++|||+|++.+. ..+..+.+..+...++| ++||+||+|+.....+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~~ 125 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV--------MPQTVEAINHAKAANVP-IIVAINKMDKPEANPD 125 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC--------CHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCHH
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHhCCCC-EEEEEECccCCcCCHH
Confidence 78999999999999888888889999999999998752 34555666666666777 9999999999853222
Q ss_pred HHHHHHHHHHHHHHHcCCCC----CCccEEEEEcccCCCccc
Q 009375 424 RFDSIKVQLGTFLRSCGFKD----ASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~----~~i~vipvSA~~GenI~e 461 (536)
. +... +...+.-. ..++++++||++|+|+.+
T Consensus 126 ~---~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 160 (178)
T 2lkc_A 126 R---VMQE----LMEYNLVPEEWGGDTIFCKLSAKTKEGLDH 160 (178)
T ss_dssp H---HHHH----HTTTTCCBTTTTSSEEEEECCSSSSHHHHH
T ss_pred H---HHHH----HHhcCcChhHcCCcccEEEEecCCCCCHHH
Confidence 2 2222 22222111 125799999999999986
No 33
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=1.5e-19 Score=173.46 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=104.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhccc-ccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-c
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG-RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-S 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~-~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~ 341 (536)
...++|+|+|.+|+|||||+++|++... .. .....|+|.......+. .
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~ 76 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAF------------------------------ASKTPGRTQHINYFSVGPA 76 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSC------------------------------TTCCCCSCCCEEEEEESCT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCccee------------------------------ecCCCCcccceEEEEecCC
Confidence 3568999999999999999999996431 11 11123444444444444 4
Q ss_pred CCeEEEEEeCCCccc----------ch---hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcE
Q 009375 342 KNYHVVVLDSPGHKD----------FV---PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d----------f~---~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~v 408 (536)
.+..+.||||||+.. |. ...+.....+|++|||+|+..+ +......++..+...++| +
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~l~~~~~p-~ 147 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP--------LTELDRRMIEWFAPTGKP-I 147 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHGGGCCC-E
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-E
Confidence 567899999999532 22 2334444558999999999875 344566677777777887 9
Q ss_pred EEEEecccccccchhHHHHHHHHHHHHHHHc---CCCCCCccEEEEEcccCCCccc
Q 009375 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSC---GFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 409 IVVINKiDl~~~~~e~~eei~~~L~~~l~~~---g~~~~~i~vipvSA~~GenI~e 461 (536)
|||+||+|+.. ..........+...+..+ +. ...++++++||++|+|+.+
T Consensus 148 i~v~nK~Dl~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv~~ 200 (223)
T 4dhe_A 148 HSLLTKCDKLT--RQESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGLDD 200 (223)
T ss_dssp EEEEECGGGSC--HHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSHHH
T ss_pred EEEEeccccCC--hhhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCHHH
Confidence 99999999984 333333334444444332 11 1245899999999999986
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.81 E-value=4.1e-19 Score=161.48 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=103.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|++|+|||||+++|++..... ...+..+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHE-----------------------------FQESTIGAAFLTQTVCLDDTT 54 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCSSEEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 467999999999999999999998532110 111234444444444455556
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..|...+...+..+|++|+|+|++... .+ ......+..+... ++| +|||+||+|+...
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~-~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE------SF-ARAKNWVKELQRQASPNIV-IALSGNKADLANK 126 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH------HH-HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHH------HH-HHHHHHHHHHHHhcCCCCc-EEEEEECccCccc
Confidence 78999999999999988888899999999999998642 11 1222333333332 344 8899999999743
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ ++..+....+ ++++++||++|+|+.+
T Consensus 127 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 127 RAVDFQ----EAQSYADDNS-----LLFMETSAKTSMNVNE 158 (170)
T ss_dssp CCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cccCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 222222 2333444444 3789999999999986
No 35
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=167.58 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=106.3
Q ss_pred CcccccCCCCcCCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccc
Q 009375 250 KPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 329 (536)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~G 329 (536)
.++.+++.....+..+.++|+|+|.+|+|||||+++|++...... .....|
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~ 59 (193)
T 2oil_A 9 HHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----------------------------SRTTIG 59 (193)
T ss_dssp -----------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSS
T ss_pred ccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccc
Confidence 345556666666667889999999999999999999985432111 011234
Q ss_pred eEEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCC
Q 009375 330 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVD 406 (536)
Q Consensus 330 iTi~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp 406 (536)
++.......+......+.||||||+.+|...+...++.+|++|||+|++.... + ......+..+... ++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s------~-~~~~~~l~~i~~~~~~~~p 132 (193)
T 2oil_A 60 VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT------Y-AVVERWLKELYDHAEATIV 132 (193)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH------H-HTHHHHHHHHHTTSCTTCE
T ss_pred eeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhcCCCCe
Confidence 44443444444456789999999999998888888999999999999986421 1 1222333333332 444
Q ss_pred cEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 407 ~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|||+||+|+........+ .+..++...++ +++++||++|+|+.+
T Consensus 133 -iilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 133 -VMLVGNKSDLSQAREVPTE----EARMFAENNGL-----LFLETSALDSTNVEL 177 (193)
T ss_dssp -EEEEEECGGGGGGCCSCHH----HHHHHHHHTTC-----EEEEECTTTCTTHHH
T ss_pred -EEEEEECCCcccccccCHH----HHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 9999999999753222222 23344444443 789999999999986
No 36
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.9e-19 Score=170.00 Aligned_cols=169 Identities=16% Similarity=0.187 Sum_probs=101.9
Q ss_pred cccCcccccCCCCcCCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhcccccccccc
Q 009375 247 TQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER 326 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~ 326 (536)
.+..++.|++........+.++|+|+|.+|+|||||+++|++..... ...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-----------------------------~~~~ 57 (201)
T 2ew1_A 7 HHHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-----------------------------GQGA 57 (201)
T ss_dssp ---------------CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT-----------------------------TCCC
T ss_pred cccccccccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCC-----------------------------CCCC
Confidence 35567888888888877889999999999999999999998532110 0011
Q ss_pred ccceEEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---
Q 009375 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--- 403 (536)
Q Consensus 327 ~~GiTi~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--- 403 (536)
..++........+......+.||||||++.|...+..+++.+|++|+|+|++... . +. .....+..+...
T Consensus 58 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s---~~-~~~~~~~~i~~~~~~ 130 (201)
T 2ew1_A 58 TIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---S---FR-CLPEWLREIEQYASN 130 (201)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHH---H---HH-THHHHHHHHHHHSCT
T ss_pred ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---H---HH-HHHHHHHHHHHhcCC
Confidence 1222222222223333467999999999999988889999999999999998642 1 11 122233333332
Q ss_pred CCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 404 GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 404 ~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
++| +|||+||+|+........++ +..+....++ +++++||++|+||.+
T Consensus 131 ~~p-iilv~NK~Dl~~~~~v~~~~----~~~~~~~~~~-----~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 131 KVI-TVLVGNKIDLAERREVSQQR----AEEFSEAQDM-----YYLETSAKESDNVEK 178 (201)
T ss_dssp TCE-EEEEEECGGGGGGCSSCHHH----HHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred CCC-EEEEEECCCCccccccCHHH----HHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 344 99999999997432222222 2333334443 789999999999986
No 37
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.80 E-value=4.4e-19 Score=162.92 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=99.6
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|++|+|||||+++|++..... ...+..++........+...
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-----------------------------TYQATIGIDFLSKTMYLEDR 61 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCCSEEEEEEEEEETTE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceeeEEEEEEEEECCe
Confidence 4567999999999999999999998432111 00111222222222333333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+..|...+...+..+|++|+|+|++... . +. .....+..+.. .++| +|||+||+|+..
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~-~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 133 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN---S---FH-QTSKWIDDVRTERGSDVI-IMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHH---H---HH-THHHHHHHHHHHHTTSSE-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---H---HH-HHHHHHHHHHHhcCCCCc-EEEEEECCcccc
Confidence 468999999999999888888899999999999998642 1 11 12222222222 2455 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......++. ..+++..++ +++++||++|+|+.+
T Consensus 134 ~~~~~~~~~----~~~~~~~~~-----~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 134 KRQVSTEEG----ERKAKELNV-----MFIETSAKAGYNVKQ 166 (179)
T ss_dssp GCCSCHHHH----HHHHHHHTC-----EEEEEBTTTTBSHHH
T ss_pred cCcCCHHHH----HHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 322222222 233334443 789999999999985
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=7.3e-19 Score=165.47 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=107.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++.... .......|.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD-----------------------------HNISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC-----------------------------TTCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCcCCCcceeEEEEEEEeCCEE
Confidence 56799999999999999999999853211 0112234555555555555567
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+.+|...+...+..+|++|||+|++.... + ......+..+... ++| +|||+||+|+...
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS------F-YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI 143 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH------H-HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH------H-HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 889999999999999888889999999999999986521 1 2223334444443 454 9999999999743
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... +++..+++..+ ++++++||++|.|+.+
T Consensus 144 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 144 REVPL----KDAKEYAESIG-----AIVVETSAKNAINIEE 175 (192)
T ss_dssp CCSCH----HHHHHHHHTTT-----CEEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 22222 23344454444 3789999999999986
No 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.80 E-value=6e-19 Score=162.83 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=103.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|.+|+|||||+++|++..... ...+..+.+.......+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 59 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVE-----------------------------FQESTIGAAFFSQTLAVNDA 59 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTT-----------------------------TSCCCSCCSEEEEEEEETTE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------cCCCCceeEEEEEEEEECCE
Confidence 4567999999999999999999998532111 00111233333333333344
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+..|...+...++.+|++|||+|++.... + .....++..+... ++| +|||+||+|+..
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~ 131 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS------F-ERAKKWVQELQAQGNPNMV-MALAGNKSDLLD 131 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH------H-HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhcCCCCc-EEEEEECCcccc
Confidence 5689999999999999888888999999999999986421 1 2233344444443 444 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...... +++..+++..++ +++++||++|+|+.+
T Consensus 132 ~~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 132 ARKVTA----EDAQTYAQENGL-----FFMETSAKTATNVKE 164 (181)
T ss_dssp TCCSCH----HHHHHHHHHTTC-----EEEECCSSSCTTHHH
T ss_pred cccCCH----HHHHHHHHHcCC-----EEEEEECCCCCCHHH
Confidence 332222 233444445554 789999999999986
No 40
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.80 E-value=6.4e-19 Score=162.11 Aligned_cols=153 Identities=18% Similarity=0.099 Sum_probs=101.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|++|+|||||+++|++..... ...++++.+.....+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 54 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSG-------------------------------SYITTIGVDFKIRTVEIN 54 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCC-------------------------------ccCCCceeEEEEEEEEEC
Confidence 3467999999999999999999998532111 111223333333333444
Q ss_pred C--eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009375 343 N--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~--~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
+ ..+.||||||+..+...+..++..+|++|||+|++.+.. +.....+...+.......|+|||+||+|+...
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES------FVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH------HHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 4 789999999999998888888999999999999986421 11222222222223323349999999998753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... .....+....++ +++++||++|+|+.+
T Consensus 129 ~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 129 KVVET----EDAYKFAGQMGI-----QLFETSAKENVNVEE 160 (181)
T ss_dssp CCSCH----HHHHHHHHHHTC-----CEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 32222 223334444454 789999999999986
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.80 E-value=5.7e-19 Score=162.53 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=99.8
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|.+|+|||||+++|++...... ..+..|+..... .+...
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~-----------------------------~~~t~~~~~~~~--~~~~~ 51 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQ-----------------------------YKQTIGLDFFLR--RITLP 51 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHH-----------------------------HHHTTTSSEEEE--EEEET
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCC-----------------------------CCCceeEEEEEE--EEEeC
Confidence 35679999999999999999999985321100 001112212222 22333
Q ss_pred ---CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-----cCCCcEEEEEec
Q 009375 343 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNK 414 (536)
Q Consensus 343 ---~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-----~~vp~vIVVINK 414 (536)
...+.||||||+..|...+..+++.+|++|||+|++.... +. ....++..+.. .+.|++|||+||
T Consensus 52 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~~~~iilv~nK 124 (178)
T 2hxs_A 52 GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---FE----NLEDWYTVVKKVSEESETQPLVALVGNK 124 (178)
T ss_dssp TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---HH----THHHHHHHHHHHHHHHTCCCEEEEEEEC
T ss_pred CCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---HH----HHHHHHHHHHHHhcccCCCCeEEEEEEc
Confidence 3789999999999998888888999999999999986421 11 11222222322 256668999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+........+ .+..+.+..++ +++++||++|+|+.+
T Consensus 125 ~Dl~~~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 125 IDLEHMRTIKPE----KHLRFCQENGF-----SSHFVSAKTGDSVFL 162 (178)
T ss_dssp GGGGGGCSSCHH----HHHHHHHHHTC-----EEEEECTTTCTTHHH
T ss_pred cccccccccCHH----HHHHHHHHcCC-----cEEEEeCCCCCCHHH
Confidence 999753222222 23334444454 789999999999986
No 42
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.80 E-value=3.3e-19 Score=161.34 Aligned_cols=155 Identities=16% Similarity=0.100 Sum_probs=98.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
|+.++|+|+|++|+|||||+++|++....... ....+... .....+....
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~-~~~~~~~~~~ 50 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKY-----------------------------DPTIEDFY-RKEIEVDSSP 50 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------------------------CTTCCEEE-EEEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccC-----------------------------CCCcceeE-EEEEEECCEE
Confidence 35789999999999999999999853211000 00111111 1222233334
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.||||||+.++...+...+..+|++|+|+|+.... .+..+.....+.+......++| +|||+||+|+......
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 126 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ---SFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREV 126 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccC
Confidence 56999999999999888888899999999999998642 1111111222222222223556 9999999998743222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ ....+.+..++ +++++||++|+|+.+
T Consensus 127 ~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 127 SSS----EGRALAEEWGC-----PFMETSAKSKTMVDE 155 (167)
T ss_dssp CHH----HHHHHHHHHTS-----CEEEECTTCHHHHHH
T ss_pred CHH----HHHHHHHHhCC-----CEEEecCCCCcCHHH
Confidence 222 23334444454 789999999999986
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=4.6e-19 Score=161.12 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=101.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+|+|++|+|||||+++|++..... ...+..|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE-----------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEE
Confidence 56899999999999999999998532110 0112234444444444444556
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 009375 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~ 421 (536)
.+.||||||+..+...+...++.+|++|+|+|++.... + ......+..+... ++| +++|+||+|+....
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS------F-IKARHWVKELHEQASKDII-IALVGNKIDXLQEG 124 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH------H-HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSS
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH------H-HHHHHHHHHHHHhcCCCCc-EEEEEECCCccccc
Confidence 89999999999999888889999999999999986421 1 1222223223222 444 99999999997531
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ +...+....+.+..++ +++++||++|.|+.+
T Consensus 125 ~~~-~v~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 125 GER-KVAREEGEKLAEEKGL-----LFFETSAKTGENVND 158 (170)
T ss_dssp CCC-CSCHHHHHHHHHHHTC-----EEEECCTTTCTTHHH
T ss_pred ccc-CCCHHHHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 100 0011223334444454 789999999999986
No 44
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.79 E-value=1.1e-18 Score=159.02 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=104.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++..... ...+..|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP-----------------------------NINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceeEEEEEEEEEECCeE
Confidence 467999999999999999999998532110 112234555544444455556
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC--CCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~--vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||++.+...+...+..+|++|+|+|++.... ......++..+.... ..++++|+||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET-------FSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH-------HHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH-------HHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 789999999999998888888999999999999986421 122233444444432 23489999999997532
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... +.+..+....+ ++++++||++|+|+.+
T Consensus 128 ~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 128 EVME----RDAKDYADSIH-----AIFVETSAKNAININE 158 (170)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred ccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 2222 22333444444 3789999999999986
No 45
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.79 E-value=9.6e-19 Score=163.32 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=70.9
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHH-HHHHcCCCcEEEEEecccccccch
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~-ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
..+.||||||+..|...+...++.+|++|||+|++.+.. +. ....++. +....+. |+|||+||+| .....
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s------~~-~~~~~~~~i~~~~~~-piilv~NK~D-~~~~~ 163 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT------LD-RAKTWVNQLKISSNY-IIILVANKID-KNKFQ 163 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH------HH-HHHHHHHHHHHHSCC-EEEEEEECTT-CC-CC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH------HH-HHHHHHHHHHhhCCC-cEEEEEECCC-ccccc
Confidence 789999999999999888889999999999999986521 11 2223333 3333454 5999999999 32222
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+ ++..+++..++ +++++||++|+|+.+
T Consensus 164 ~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~i~~ 193 (208)
T 3clv_A 164 VDIL----EVQKYAQDNNL-----LFIQTSAKTGTNIKN 193 (208)
T ss_dssp SCHH----HHHHHHHHTTC-----EEEEECTTTCTTHHH
T ss_pred CCHH----HHHHHHHHcCC-----cEEEEecCCCCCHHH
Confidence 2333 34445555544 889999999999986
No 46
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.79 E-value=5.6e-19 Score=160.38 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=98.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|.+|+|||||+++|++...... .....+.... ....+....
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~t~~~~~~-~~~~~~~~~ 50 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEK-----------------------------YDPTIEDSYR-KQVEVDCQQ 50 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCS-----------------------------CCCCSEEEEE-EEEESSSCE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCCccceEE-EEEEECCEE
Confidence 3578999999999999999999985321100 0011111111 122234456
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.||||||+..+...+...+..+|++|+|+|++... .+..+......+.......++| +|||+||+|+......
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 126 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS---TFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV 126 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCS
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccC
Confidence 78999999999999888888899999999999998641 1111111111221111122555 9999999999753222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ ++..+.+.++ .++++++||++|+|+.+
T Consensus 127 ~~~----~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 127 GKE----QGQNLARQWC----NCAFLESSAKSKINVNE 156 (167)
T ss_dssp CHH----HHHHHHHHTT----SCEEEECBTTTTBSHHH
T ss_pred CHH----HHHHHHHHcc----CCcEEEecCCCCCCHHH
Confidence 222 2333344431 24789999999999986
No 47
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=163.72 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=102.6
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++...... ..+..+.+.......+...
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 63 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTES-----------------------------YISTIGVDFKIRTIELDGK 63 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSC-----------------------------CCCCSSEEEEEEEEEETTE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCC-----------------------------CCCcccceEEEEEEEECCE
Confidence 35679999999999999999999985321110 0111223333333333333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+..+...+..+++.+|++|||+|++.... + ......+..+... ++| +|||+||+|+..
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES------F-NNVKQWLQEIDRYASENVN-KLLVGNKCDLTT 135 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH------H-HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 3679999999999999888889999999999999986421 1 1222333333333 455 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......+ ....+...+++ +++++||++|+|+.+
T Consensus 136 ~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 136 KKVVDYT----TAKEFADSLGI-----PFLETSAKNATNVEQ 168 (196)
T ss_dssp TCCSCHH----HHHHHHHHTTC-----CEEEECTTTCTTHHH
T ss_pred ccccCHH----HHHHHHHHcCC-----cEEEEeCCCCCCHHH
Confidence 4332222 23344444554 789999999999986
No 48
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.79 E-value=7.8e-19 Score=164.92 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=106.9
Q ss_pred ccccCCCCcCCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceE
Q 009375 252 EKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 331 (536)
Q Consensus 252 ~~~~~~~~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiT 331 (536)
+.|+.........+.++|+|+|.+|+|||||+++|++....... ....+++
T Consensus 7 ~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~t~~~~ 57 (191)
T 2a5j_A 7 HHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------------------DLTIGVE 57 (191)
T ss_dssp ---CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------------CCSS
T ss_pred ccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-----------------------------CCcccce
Confidence 34555555666778899999999999999999999853221100 1112222
Q ss_pred EEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcE
Q 009375 332 MTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQL 408 (536)
Q Consensus 332 i~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~v 408 (536)
.......+......+.||||||+..|...+...++.+|++|||+|++.... + ......+..+... ++| +
T Consensus 58 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~-~~~~~~l~~i~~~~~~~~p-i 129 (191)
T 2a5j_A 58 FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------F-NHLTSWLEDARQHSSSNMV-I 129 (191)
T ss_dssp EEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTCE-E
T ss_pred eEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhcCCCCC-E
Confidence 333333333344689999999999998888888999999999999986421 1 1222333333332 455 9
Q ss_pred EEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 409 IVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|||+||+|+........+ ++..+.+..++ +++++||++|+||.+
T Consensus 130 ilv~nK~Dl~~~~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 130 MLIGNKSDLESRRDVKRE----EGEAFAREHGL-----IFMETSAKTACNVEE 173 (191)
T ss_dssp EEEEECTTCGGGCCSCHH----HHHHHHHHHTC-----EEEEECTTTCTTHHH
T ss_pred EEEEECcccCCccccCHH----HHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 999999999743222222 23344444454 789999999999986
No 49
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.79 E-value=6.9e-19 Score=159.36 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=96.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|.+|+|||||+++|++....... ....+.... ....+....
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------------------------~~t~~~~~~-~~~~~~~~~ 51 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----------------------------EPTKADSYR-KKVVLDGEE 51 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----------------------------CTTCCEEEE-EEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCC-----------------------------CCCcceEEE-EEEEECCEE
Confidence 45789999999999999999999853311000 011111111 112233344
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+.++...+...+..+|++|+|+|++... . +.....+...+... .++| ++||+||+|+...
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---S---FAATADFREQILRVKEDENVP-FLLVGNKSDLEDK 124 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCc-EEEEEECcccccc
Confidence 68999999999999888888899999999999998642 1 11111211222222 2455 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....++ +..+++..++ +++++||++|+|+.+
T Consensus 125 ~~~~~~~----~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 125 RQVSVEE----AKNRADQWNV-----NYVETSAKTRANVDK 156 (168)
T ss_dssp CCSCHHH----HHHHHHHHTC-----EEEECCTTTCTTHHH
T ss_pred CccCHHH----HHHHHHHcCC-----eEEEeCCCCCCCHHH
Confidence 3322222 3334444454 789999999999986
No 50
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=166.67 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=101.4
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
...+.++|+|+|..|+|||||+++|++....+.. .....+ .....+..
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------------------~~~t~~----~~~~~~~~ 64 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN----------------------------ILPTIG----FSIEKFKS 64 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSS----------------------------CCCCSS----EEEEEEEC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------------------cCCccc----eeEEEEEE
Confidence 3456799999999999999999999854311100 011122 22233455
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-----cCCCcEEEEEeccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMD 416 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-----~~vp~vIVVINKiD 416 (536)
.+..+.||||||++.+...+...+..+|++|||+|++... .+.....++..++.. .++| +|||+||+|
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 137 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL------RMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMD 137 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHH------HHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcC
Confidence 6789999999999999988888999999999999998641 122222333333333 3555 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... ...+++.+ .+....+....++++++||++|+|+.+
T Consensus 138 l~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 138 LRDA--VTSVKVSQ----LLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp STTC--CCHHHHHH----HHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred cccC--CCHHHHHH----HhChhhccCCceEEEEccCCCCcCHHH
Confidence 9742 22233332 232122222356899999999999986
No 51
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=6.8e-19 Score=179.70 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=102.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+..+|+|+|++|+|||||+|+|++....+.... +++|.......+...+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~------------------------------~~tTr~~i~~i~~~~~ 54 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPR------------------------------PQTTRKRLRGILTEGR 54 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSS------------------------------SCCCCSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCC------------------------------CCceeEEEEEEEEeCC
Confidence 4567899999999999999999997654432211 1111111111234568
Q ss_pred eEEEEEeCCCccc--------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEe
Q 009375 344 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVN 413 (536)
Q Consensus 344 ~~i~LIDTPGh~d--------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVIN 413 (536)
..++||||||+.+ |......+++.+|++|||+|++.+ +.....+.+..+... ++| +|+|+|
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~--------~~~~~~~i~~~l~~~~~~~p-~ilV~N 125 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP--------PTPEDELVARALKPLVGKVP-ILLVGN 125 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC--------CCHHHHHHHHHHGGGTTTSC-EEEEEE
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCC--------CChHHHHHHHHHHhhcCCCC-EEEEEE
Confidence 8999999999776 566667788999999999999876 234455666666666 676 999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+|+...... +.+.+..+ .+ ..+++|+||++|.|+.+
T Consensus 126 K~Dl~~~~~~----~~~~~~~~---~~----~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 126 KLDAAKYPEE----AMKAYHEL---LP----EAEPRMLSALDERQVAE 162 (301)
T ss_dssp CGGGCSSHHH----HHHHHHHT---ST----TSEEEECCTTCHHHHHH
T ss_pred CcccCCchHH----HHHHHHHh---cC----cCcEEEEeCCCCCCHHH
Confidence 9999743111 22222222 22 24689999999999975
No 52
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.79 E-value=1.4e-18 Score=162.60 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=105.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++..... ......|++.......+...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 69 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTVYRHDK 69 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCCCEEEEEEEEETTE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CcCCceeEEEEEEEEEECCe
Confidence 3457999999999999999999998532111 01112344444444444445
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+..|...+..++..+|++|||+|++.... + .....++..+... ++| +|||+||+|+..
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 141 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES------F-AAVQDWATQIKTYSWDNAQ-VILVGNKCDLED 141 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 6789999999999998888889999999999999986421 1 2223334444443 455 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...... +.+..+.+.+++ +++++||++|.|+.+
T Consensus 142 ~~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 142 ERVVPA----EDGRRLADDLGF-----EFFEASAKENINVKQ 174 (189)
T ss_dssp GCCSCH----HHHHHHHHHHTC-----EEEECBTTTTBSHHH
T ss_pred ccCCCH----HHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 322222 233444445554 789999999999986
No 53
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.79 E-value=1.5e-18 Score=158.44 Aligned_cols=151 Identities=23% Similarity=0.173 Sum_probs=101.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++.... ...+..+.+ ...+....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------------------~~~~t~~~~----~~~~~~~~ 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV------------------------------TTIPTIGFN----VETVTYKN 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC------------------------------CCCCCSSEE----EEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------------------------------CcCCcCccc----eEEEEECC
Confidence 45689999999999999999999842210 001112222 22344568
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..+...+...++.+|++|||+|++... .+.....+...++.. .++| +|||+||+|+...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD------RIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT------THHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCC
Confidence 89999999999999888888999999999999998652 122233333333332 3555 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++...+. ...+....++++++||++|+|+.+
T Consensus 124 --~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 124 --MTSSEMANSLG----LPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp --CCHHHHHHHHT----GGGCTTSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHHHhC----chhccCCceEEEECcCCCCcCHHH
Confidence 22223333222 111222345899999999999986
No 54
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=159.67 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=92.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|++|+|||||+++|++...... ....|.+.......+....
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 51 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL------------------------------HEQLGEDVYERTLTVDGED 51 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc------------------------------cCccccceeEEEEEECCEE
Confidence 3568999999999999999999985322110 0113333333333344344
Q ss_pred eEEEEEeCCCccc--chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc----CCCcEEEEEecccc
Q 009375 344 YHVVVLDSPGHKD--FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (536)
Q Consensus 344 ~~i~LIDTPGh~d--f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----~vp~vIVVINKiDl 417 (536)
..+.||||||+.. +.......++.+|++|+|+|++... . +. .....+..+... ++| +|||+||+|+
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~-~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl 123 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG---S---FE-SASELRIQLRRTHQADHVP-IILVGNKADL 123 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH---H---HH-HHHHHHHHHHHCC----CC-EEEEEECTTC
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH---H---HH-HHHHHHHHHHHhhccCCCC-EEEEEEChhh
Confidence 6789999999887 4444556678899999999998641 1 11 222333333332 566 9999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
........++ ...+....++ +++++||++|+|+.+
T Consensus 124 ~~~~~v~~~~----~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 124 ARCREVSVEE----GRACAVVFDC-----KFIETSATLQHNVAE 158 (175)
T ss_dssp TTTCCSCHHH----HHHHHHHHTS-----EEEECBTTTTBSHHH
T ss_pred ccccccCHHH----HHHHHHHcCC-----eEEEEecCCCCCHHH
Confidence 7532222222 2233334443 789999999999986
No 55
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=1.2e-18 Score=159.99 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=103.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 63 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA-----------------------------DCPHTIGVEFGTRIIEVSGQK 63 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCTTSCCCCEEEEEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCeE
Confidence 457999999999999999999998543211 011122333333333344445
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..+...+...+..+|++|||+|++.+.. + ......+..+.. .++| +|||+||+|+...
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 135 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST------Y-NHLSSWLTDARNLTNPNTV-IILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH------H-HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 689999999999999888889999999999999986521 1 112222222333 3444 9999999999743
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... +++..+++..++ +++++||++|+|+.+
T Consensus 136 ~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 136 RDVTY----EEAKQFAEENGL-----LFLEASAKTGENVED 167 (179)
T ss_dssp CCSCH----HHHHHHHHHTTC-----EEEECCTTTCTTHHH
T ss_pred cccCH----HHHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 22222 233444555554 789999999999986
No 56
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.78 E-value=1.7e-18 Score=157.89 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=94.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++..... ...+..+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 54 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFND-----------------------------KHITTLGASFLTKKLNIGGKR 54 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCS-----------------------------SCCCCCSCEEEEEEEESSSCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCc-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 457899999999999999999998532110 001112222222333333345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+.++...+...++.+|++|+|+|++.... + .....++..+.. .++| ++||+||+|+...
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 126 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS------F-QKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKE 126 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH------H-HHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGG
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH------H-HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 678999999999998888888999999999999986421 1 122222222322 3455 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ ++..+.+..++ +++++||++|+|+.+
T Consensus 127 ~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 127 RHVSIQ----EAESYAESVGA-----KHYHTSAKQNKGIEE 158 (170)
T ss_dssp CCSCHH----HHHHHHHHTTC-----EEEEEBTTTTBSHHH
T ss_pred cccCHH----HHHHHHHHcCC-----eEEEecCCCCCCHHH
Confidence 222222 33344445553 789999999999986
No 57
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=8.9e-19 Score=179.12 Aligned_cols=152 Identities=24% Similarity=0.289 Sum_probs=105.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+.-.|+|+|++|+|||||+|+|++....+... ..++|.......+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~------------------------------~~~tT~~~~~~~~~~~~ 57 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP------------------------------KAGTTRMRVLGVKNIPN 57 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS------------------------------SSCCCCSCEEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCC------------------------------CCCceeeEEEEEEecCC
Confidence 456789999999999999999999765433221 1233333333334556
Q ss_pred CeEEEEEeCCCcccch----------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHH-HHHHHHcCCCcEEEE
Q 009375 343 NYHVVVLDSPGHKDFV----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH-AQLIRSFGVDQLIVA 411 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~----------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~-l~ll~~~~vp~vIVV 411 (536)
+..++||||||+.++. ..+..++..+|++|+|+|++.+ ........ +..+...++| +|+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~--------~~~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEG--------WRPRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCC--------CCchhHHHHHHHHHhcCCC-EEEE
Confidence 8899999999985533 5567778899999999999976 23344555 6667777787 9999
Q ss_pred EecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 412 INKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+||+|+... ...+....+.+.. .++ ...+++++||++|.|+.+
T Consensus 129 ~NK~Dl~~~-~~~~~~~~~~l~~---~~~---~~~~i~~vSA~~g~gv~~ 171 (308)
T 3iev_A 129 INKIDKIGP-AKNVLPLIDEIHK---KHP---ELTEIVPISALKGANLDE 171 (308)
T ss_dssp EECGGGSSS-GGGGHHHHHHHHH---HCT---TCCCEEECBTTTTBSHHH
T ss_pred EECccCCCC-HHHHHHHHHHHHH---hcc---CCCeEEEEeCCCCCCHHH
Confidence 999999732 2222333333333 332 124789999999999986
No 58
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.9e-18 Score=159.37 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=94.5
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|++|+|||||+++|++...... ...+..+++.......+...
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------------------~~~~t~~~~~~~~~~~~~~~ 58 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG----------------------------TFISTVGIDFRNKVLDVDGV 58 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCC----------------------------CCCCCCSCEEEEEEEEETTE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCC----------------------------CcCCceeeEEEEEEEEECCE
Confidence 35679999999999999999999985332110 01112233332222233333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~ 419 (536)
...+.||||||++.|...+...+..+|++|||+|++.+.. + ......+..+.. .++| +|||+||+|+..
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 130 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS------F-DNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAH 130 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTCE-EEEEEECCSTTS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhCCCCCc-EEEEEECcccCc
Confidence 4689999999999998888889999999999999986421 1 112233333333 3455 999999999985
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......+ .+..+.+..++ +++++||++|+|+.+
T Consensus 131 ~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 131 ERVVKRE----DGEKLAKEYGL-----PFMETSAKTGLNVDL 163 (180)
T ss_dssp CCCSCHH----HHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred ccccCHH----HHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 3222222 22333444454 789999999999986
No 59
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=3.3e-19 Score=190.61 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=110.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~~ 223 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQQ 223 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------EC---------CCEEEEETTE
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceeeeeEEEEEECCe
Confidence 46899999999999999999999643221 122356666665556677888
Q ss_pred EEEEEeCCCcc----------cchhh-HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009375 345 HVVVLDSPGHK----------DFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 345 ~i~LIDTPGh~----------df~~~-~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
.+.||||||+. .|... ...+++.+|++|||+|++.+. ..+...++..+...+.| +|||+|
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~--------s~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI--------IEQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC--------cHHHHHHHHHHHHcCCc-EEEEEE
Confidence 89999999983 33322 345778899999999999873 34566677777777877 999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
|+|+.......++++.+.+...+.... .++++++||++|+|+.++
T Consensus 295 K~Dl~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 295 KWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTL 339 (436)
T ss_dssp CGGGSCCCTTHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGH
T ss_pred CccCCCcchHHHHHHHHHHHHhcccCC----CCCEEEEecccCCCHHHH
Confidence 999986544455666666666654443 247899999999999874
No 60
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=166.90 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=98.4
Q ss_pred CcccccCCCCcCCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccc
Q 009375 250 KPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 329 (536)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~G 329 (536)
.++.|+.+.......+.++|+|+|.+|+|||||+++|++....... .+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-----------------------------~~t~~ 59 (200)
T 2o52_A 9 HHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS-----------------------------NHTIG 59 (200)
T ss_dssp -------------CCEEEEEEEEESTTSSHHHHHHHHHC-----------------------------------------
T ss_pred ccccccccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccC-----------------------------CCccc
Confidence 4566666666666678899999999999999999999853221100 01112
Q ss_pred eEEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCC
Q 009375 330 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVD 406 (536)
Q Consensus 330 iTi~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp 406 (536)
++.......+......+.||||||+..|...+...++.+|++|||+|++.... +. .....+..+.. .++|
T Consensus 60 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~-~~~~~~~~~~~~~~~~~p 132 (200)
T 2o52_A 60 VEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET------YN-SLAAWLTDARTLASPNIV 132 (200)
T ss_dssp CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH------HH-THHHHHHHHHHHTCTTCE
T ss_pred ceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH------HH-HHHHHHHHHHHhcCCCCc
Confidence 22222222233334789999999999888878888899999999999986421 11 12222222322 2455
Q ss_pred cEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 407 ~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|||+||+|+........+ ++..+.+..++ +++++||++|+|+.+
T Consensus 133 -iilv~nK~Dl~~~~~v~~~----~~~~~~~~~~~-----~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 133 -VILCGNKKDLDPEREVTFL----EASRFAQENEL-----MFLETSALTGENVEE 177 (200)
T ss_dssp -EEEEEECGGGGGGCCSCHH----HHHHHHHHTTC-----EEEEECTTTCTTHHH
T ss_pred -EEEEEECCCcccccccCHH----HHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 9999999999743222222 23334444443 789999999999986
No 61
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.78 E-value=1.8e-18 Score=162.31 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=101.7
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009375 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
......++|+|+|.+|+|||||+++|++...... ...+..|.+ ...+.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----------------------------~~~~t~~~~----~~~~~ 59 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----------------------------HITATVGYN----VETFE 59 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC--------------------------------CCCCCSSEE----EEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----------------------------cccccccee----EEEEE
Confidence 3456789999999999999999999985332110 001112222 22345
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----------cCCCcEEE
Q 009375 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----------FGVDQLIV 410 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----------~~vp~vIV 410 (536)
.....+.||||||++.|...+..+++.+|++|||+|++.+.. +.....++..++.. .++| +||
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iil 132 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR------LCVVKSEIQAMLKHEDIRRELPGGGRVP-FLF 132 (199)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG------HHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEE
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH------HHHHHHHHHHHHhChhhhhcccccCCCC-EEE
Confidence 678999999999999999988899999999999999996521 22222222222222 1566 999
Q ss_pred EEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 411 VINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+||+|+... ...+++.+.+..... +....++++++||++|+||.+
T Consensus 133 v~NK~Dl~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~g~gv~~ 178 (199)
T 4bas_A 133 FANKMDAAGA--KTAAELVEILDLTTL---MGDHPFVIFASNGLKGTGVHE 178 (199)
T ss_dssp EEECTTSTTC--CCHHHHHHHHTHHHH---HTTSCEEEEECBTTTTBTHHH
T ss_pred EEECcCCCCC--CCHHHHHHHhcchhh---ccCCeeEEEEeeCCCccCHHH
Confidence 9999999853 223334333321110 011345899999999999986
No 62
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=7.1e-19 Score=159.02 Aligned_cols=143 Identities=21% Similarity=0.298 Sum_probs=98.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++...... ....+++.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV------------------------------ADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec------------------------------cCCCCceecceEEEEEeCCceE
Confidence 6899999999999999999985432110 1123344444444455677889
Q ss_pred EEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009375 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 347 ~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
.||||||+.. +...+...+..+|++|+|+|++.+ +.....+...++...++| +++|+||+|+..
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE--------LTQADYEVAEYLRRKGKP-VILVATKVDDPK 122 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSC--------CCHHHHHHHHHHHHHTCC-EEEEEECCCSGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCc--------ccHhHHHHHHHHHhcCCC-EEEEEECccccc
Confidence 9999999877 344556678899999999999875 223445556666667777 999999999985
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. . +.+..+. .+++ .+++++||++|+|+.+
T Consensus 123 ~-~-------~~~~~~~-~~~~----~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 123 H-E-------LYLGPLY-GLGF----GDPIPTSSEHARGLEE 151 (161)
T ss_dssp G-G-------GGCGGGG-GGSS----CSCEECBTTTTBSHHH
T ss_pred c-h-------HhHHHHH-hCCC----CCeEEEecccCCChHH
Confidence 3 1 1122222 3343 2579999999999986
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.78 E-value=3.3e-18 Score=161.68 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=104.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|++|+|||||+++|++..... ......|++.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTIYRNDKR 56 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCS-----------------------------CCCCCCSEEEEEEEEEETTEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCCccceeEEEEEEEECCeE
Confidence 346899999999999999999998532111 011123444444444444456
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..|...+...++.+|++|||+|++.+. . + .....++..+... ++| +|||+||+|+...
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s---~-~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 128 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE---S---F-NAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDE 128 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHH---H---H-HHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTS
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHH---H---H-HHHHHHHHHHHHhcCCCCC-EEEEEECcccCcc
Confidence 78999999999999988889999999999999998642 1 1 1222333334332 444 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... +.+..+.+.+++ +++++||++|.|+.+
T Consensus 129 ~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 129 RVVSS----ERGRQLADHLGF-----EFFEASAKDNINVKQ 160 (203)
T ss_dssp CCSCH----HHHHHHHHHHTC-----EEEECBTTTTBSSHH
T ss_pred cccCH----HHHHHHHHHCCC-----eEEEEECCCCCCHHH
Confidence 22222 223334444554 789999999999986
No 64
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.78 E-value=1.1e-18 Score=160.49 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=98.9
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|.+|+|||||+++|++..... ...+..|.+.......+...
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDT-----------------------------QLFHTIGVEFLNKDLEVDGH 54 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC---------------------------------CCSEEEEEEEEEETTE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceeeeEEEEEEEECCE
Confidence 3467999999999999999999998532110 01112233332333333333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+..+...+...+..+|++|+|+|++.+.. +..+.....+....... .++| +|||+||+|+..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~ 130 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISE 130 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccc
Confidence 4689999999999999888889999999999999986521 11111111111111110 3445 999999999973
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....++ +..+++.. ..++++++||++|+|+.+
T Consensus 131 -~~~~~~~----~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 131 -RQVSTEE----AQAWCRDN----GDYPYFETSAKDATNVAA 163 (177)
T ss_dssp -CSSCHHH----HHHHHHHT----TCCCEEECCTTTCTTHHH
T ss_pred -cccCHHH----HHHHHHhc----CCceEEEEeCCCCCCHHH
Confidence 2222222 23333321 134789999999999986
No 65
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=6.6e-19 Score=177.09 Aligned_cols=146 Identities=23% Similarity=0.313 Sum_probs=104.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
|+.++|+|+|++|+|||||+|+|++....+ ...+|+|.+.....+...+
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v-------------------------------~~~~g~t~~~~~~~~~~~~ 49 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRV-------------------------------GNWAGVTVERKEGQFSTTD 49 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEE-------------------------------EECTTSSSEEEEEEEECSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCccc-------------------------------CCCCCeeEEEEEEEEEeCC
Confidence 357899999999999999999999643211 1235777777777777788
Q ss_pred eEEEEEeCCCcccchhh----------H--hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEE
Q 009375 344 YHVVVLDSPGHKDFVPN----------M--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~----------~--~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVV 411 (536)
..+.||||||+.++... . ......+|++|+|+|++.. .....+...+...++| +|+|
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----------~~~~~~~~~l~~~~~p-~ivv 118 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ERNLYLTLQLLELGIP-CIVA 118 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----------HHHHHHHHHHHHHTCC-EEEE
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----------HHHHHHHHHHHhcCCC-EEEE
Confidence 89999999998776521 1 1123689999999999852 3444555666677888 9999
Q ss_pred EecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 412 INKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+||+|+....... ..+..+.+.+++ +++++||++|+|+.+
T Consensus 119 ~NK~Dl~~~~~~~-----~~~~~l~~~lg~-----~~i~~SA~~g~gi~e 158 (274)
T 3i8s_A 119 LNMLDIAEKQNIR-----IEIDALSARLGC-----PVIPLVSTRGRGIEA 158 (274)
T ss_dssp EECHHHHHHTTEE-----ECHHHHHHHHTS-----CEEECCCGGGHHHHH
T ss_pred EECccchhhhhHH-----HHHHHHHHhcCC-----CEEEEEcCCCCCHHH
Confidence 9999987422110 112222333443 789999999999986
No 66
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.78 E-value=3.5e-18 Score=158.76 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=100.6
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEE-EEEEEeec
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDS 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~ 341 (536)
....++|+|+|++|+|||||+++|++..... ......+.... .....+..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 58 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNS-----------------------------KFITTVGIDFREKRVVYRAN 58 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCSEEEEEEEEEECTT
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CcccccceeeeeEEEEEecC
Confidence 3567999999999999999999998532110 00111222222 11222222
Q ss_pred C---------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcE
Q 009375 342 K---------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQL 408 (536)
Q Consensus 342 ~---------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~v 408 (536)
. ...+.||||||+..|...+...++.+|++|||+|++.+.. + ......+..+.. .++| +
T Consensus 59 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~~p-i 130 (195)
T 3bc1_A 59 GPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS------F-LNVRNWISQLQMHAYSENPD-I 130 (195)
T ss_dssp SCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHSSSSSCC-E
T ss_pred CcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhcCCCCCC-E
Confidence 2 4689999999999999989999999999999999986421 1 122233333333 3455 9
Q ss_pred EEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 409 IVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|||+||+|+........ +.+..+....++ +++++||++|.|+.+
T Consensus 131 ilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 131 VLCGNKSDLEDQRAVKE----EEARELAEKYGI-----PYFETSAANGTNISH 174 (195)
T ss_dssp EEEEECTTCGGGCCSCH----HHHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred EEEEECcccccccccCH----HHHHHHHHHcCC-----CEEEEECCCCCCHHH
Confidence 99999999975322222 223344444454 789999999999986
No 67
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.78 E-value=1.3e-18 Score=161.47 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=75.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++..... ...+..++........+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-----------------------------TFISTIGIDFKIRTIELDGKR 56 (183)
T ss_dssp SEEEEEEEECCCCC---------------------------------------------CHHHHHCEEEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCcccceeEEEEEEECCEE
Confidence 457999999999999999999998432110 001112222222222232233
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..|...+...++.+|++|||+|++... . + .....++..+... ++| +|||+||+|+...
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~-~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 128 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK---S---F-DNIRNWIRNIEEHASADVE-KMILGNKCDVNDK 128 (183)
T ss_dssp EEEEEEEC---------CCTTTTTCSEEEEEEETTCHH---H---H-HHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSC
T ss_pred EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHH---H---H-HHHHHHHHHHHHhcCCCCC-EEEEEECccCCcc
Confidence 78999999999999888888899999999999998642 1 1 1223333333332 445 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ ++..+.+..++ +++++||++|+|+.+
T Consensus 129 ~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 129 RQVSKE----RGEKLALDYGI-----KFMETSAKANINVEN 160 (183)
T ss_dssp CCSCHH----HHHHHHHHHTC-----EEEECCC---CCHHH
T ss_pred CcCCHH----HHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 222222 23344444554 789999999999986
No 68
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.78 E-value=2.3e-18 Score=156.51 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=98.9
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+|+|++|+|||||+++|++..... ...+..+.........+.....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 54 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-----------------------------DYKKTIGVDFLERQIQVNDEDV 54 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------------CSSCCCSSSEEEEEEEETTEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceEEEEEEEEEEECCEEE
Confidence 56899999999999999999998532110 0011112222222222333356
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH-H-cCCCcEEEEEecccccccch
Q 009375 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-S-FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~-~-~~vp~vIVVINKiDl~~~~~ 422 (536)
.+.||||||+..+...+...+..+|++|+|+|++.... +. .....+..+. . .+.| +++|+||+|+.....
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~-~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~ 126 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES------FE-AISSWREKVVAEVGDIP-TALVQNKIDLLDDSC 126 (168)
T ss_dssp EEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH------HH-THHHHHHHHHHHHCSCC-EEEEEECGGGGGGCS
T ss_pred EEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH------HH-HHHHHHHHHHHhCCCCC-EEEEEECcccCcccc
Confidence 89999999999988888888899999999999986421 11 1122222222 2 2555 999999999975322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+ ++..+.+..++ +++++||++|+|+.+
T Consensus 127 ~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 127 IKNE----EAEGLAKRLKL-----RFYRTSVKEDLNVSE 156 (168)
T ss_dssp SCHH----HHHHHHHHHTC-----EEEECBTTTTBSSHH
T ss_pred cCHH----HHHHHHHHcCC-----eEEEEecCCCCCHHH
Confidence 2222 23344444554 789999999999986
No 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.78 E-value=2e-18 Score=160.12 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=101.3
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
...+.++|+|+|.+|+|||||+++|++...... .....+... .....+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~ 63 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD-----------------------------YDPTIEDSY-LKHTEIDN 63 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC-----------------------------CCTTCCEEE-EEEEEETT
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCcccee-EEEEEeCC
Confidence 346689999999999999999999984321100 001112222 22222333
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
....+.||||||++.|...+...++.+|++|+|+|++.+. .+..+..+...+.......++| +|||+||+|+....
T Consensus 64 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 139 (183)
T 3kkq_A 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA---SFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLR 139 (183)
T ss_dssp EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTC
T ss_pred cEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhcc
Confidence 3455778999999999888888899999999999998642 1222222222222222234556 99999999997532
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcc-cCCCccc
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~-~GenI~e 461 (536)
....+ ++..+.+.+++ +++++||+ +|+|+.+
T Consensus 140 ~v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 140 KVTRD----QGKEMATKYNI-----PYIETSAKDPPLNVDK 171 (183)
T ss_dssp CSCHH----HHHHHHHHHTC-----CEEEEBCSSSCBSHHH
T ss_pred CcCHH----HHHHHHHHhCC-----eEEEeccCCCCCCHHH
Confidence 32222 23444444453 78999999 9999986
No 70
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.78 E-value=2e-18 Score=160.97 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=102.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++..... .....+.|........ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~---~ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------------------------VSKTPGKTRSINFYLV---N 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------------------------CCSSCCCCCCEEEEEE---T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc------------------------------ccCCCCCccCeEEEEE---C
Confidence 456899999999999999999998543111 1111233333332222 3
Q ss_pred eEEEEEeCCC----------cccchhh---HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEE
Q 009375 344 YHVVVLDSPG----------HKDFVPN---MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (536)
Q Consensus 344 ~~i~LIDTPG----------h~df~~~---~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIV 410 (536)
..+.|||||| +..+... .......+|++++|+|+..+ ........+..+...++| +||
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIP--------PQDSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCC-EEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEE
Confidence 4588999999 3334333 33444556999999999865 234455666777777887 999
Q ss_pred EEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 411 VINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+||+|+.. ....+...+.+..++...+ .++++++||++|+|+.+
T Consensus 139 v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 139 VLTKMDKVK--MSERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGISE 183 (195)
T ss_dssp EEECGGGSC--GGGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTHHH
T ss_pred EEEChhcCC--hHHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCHHH
Confidence 999999983 3445556666777665543 24789999999999986
No 71
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.78 E-value=9.9e-19 Score=161.89 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=99.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++..... ......+.+. .....+....
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 53 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVD-----------------------------SYDPTIENTF-TKLITVNGQE 53 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCS-----------------------------CCCTTCCEEE-EEEEEETTEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCccccE-EEEEEECCEE
Confidence 467999999999999999999998432110 0011122222 2222233334
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.||||||++.|...+...++.+|++|+|+|++... .+..+..+..++...+...++| +|||+||+|+......
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~ 129 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK---SFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVI 129 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCS
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhccee
Confidence 67899999999999877788889999999999998642 1111222222222222233566 9999999998643332
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. +++..+.+.+++ +++++||++|+|+.+
T Consensus 130 ~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 130 SY----EEGKALAESWNA-----AFLESSAKENQTAVD 158 (181)
T ss_dssp CH----HHHHHHHHHTTC-----EEEECCTTSHHHHHH
T ss_pred cH----HHHHHHHHHhCC-----cEEEEecCCCCCHHH
Confidence 22 334445555554 789999999999986
No 72
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.78 E-value=1.7e-18 Score=162.45 Aligned_cols=153 Identities=17% Similarity=0.157 Sum_probs=102.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|.+|+|||||+++|++..... ...+..+.+ ...+...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~----~~~~~~~ 65 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE-----------------------------DMIPTVGFN----MRKITKG 65 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCSEE----EEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------ccCCCCcee----EEEEEeC
Confidence 3567999999999999999999998532110 001112222 2234567
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+.+|...+..++..+|++|||+|++... .+.....++..++.. .++| +|||+||+|+..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE------KIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPG 138 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH------HHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCcc
Confidence 889999999999999888888899999999999998641 122233333333332 3555 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ...+++.+.+. ...+....++++++||++|+|+.+
T Consensus 139 ~--~~~~~~~~~~~----~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 139 A--LDEKELIEKMN----LSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp C--CCHHHHHHHTT----GGGCCSSCEEEEECCTTTCTTHHH
T ss_pred C--CCHHHHHHHhC----hhhhccCCeeEEEEECCCCCCHHH
Confidence 3 12222222221 111222356889999999999986
No 73
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=163.99 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=99.3
Q ss_pred ccCCCCcCCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEE
Q 009375 254 WMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT 333 (536)
Q Consensus 254 ~~~~~~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~ 333 (536)
++...........++|+|+|.+|+|||||+++|++..... ...+.+..+
T Consensus 17 ~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-------------------------------~~~~t~~~~ 65 (201)
T 2hup_A 17 RGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSE-------------------------------RQGSTIGVD 65 (201)
T ss_dssp ---------CCEEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------C
T ss_pred CCCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCC-------------------------------CCCCCcceE
Confidence 3334444455678999999999999999999998532110 001111112
Q ss_pred EEEEEeecC--CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcE
Q 009375 334 VAVAYFDSK--NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQL 408 (536)
Q Consensus 334 ~~~~~~~~~--~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~v 408 (536)
.....+... ...+.||||||+++|...+..+++.+|++|||+|++... . +. .....+..+.. .++| +
T Consensus 66 ~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s---~~-~~~~~~~~i~~~~~~~~p-i 137 (201)
T 2hup_A 66 FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS---S---FL-SVPHWIEDVRKYAGSNIV-Q 137 (201)
T ss_dssp EEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH---H---HH-THHHHHHHHHHHSCTTCE-E
T ss_pred EEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH---H---HH-HHHHHHHHHHHhcCCCCC-E
Confidence 222223333 368999999999999988888999999999999998642 1 11 22233333333 2344 9
Q ss_pred EEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 409 IVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|||+||+|+........+ ++..+++..++ .+++++||++|+||.+
T Consensus 138 ilv~NK~Dl~~~~~v~~~----~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 138 LLIGNKSDLSELREVSLA----EAQSLAEHYDI----LCAIETSAKDSSNVEE 182 (201)
T ss_dssp EEEEECTTCGGGCCSCHH----HHHHHHHHTTC----SEEEECBTTTTBSHHH
T ss_pred EEEEECCccccccccCHH----HHHHHHHHcCC----CEEEEEeCCCCCCHHH
Confidence 999999999753222222 33344444443 2789999999999986
No 74
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=1.7e-18 Score=160.10 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=99.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|.+|+|||||+++|++...... .....+.... ....+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~-~~~~~~~~ 64 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED-----------------------------YEPTKADSYR-KKVVLDGE 64 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------------------------CCTTCCEEEE-EEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCc-----------------------------CCCccceEEE-EEEEECCE
Confidence 35679999999999999999999985321100 0001111111 11223333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+.+|...+..++..+|++|+|+|++... . +.....+...+... .++| +|||+||+|+..
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 137 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---S---FAATADFREQILRVKEDENVP-FLLVGNKSDLED 137 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 467999999999999988888899999999999998642 1 11111222222222 2555 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...... +++..+++.+++ +++++||++|+|+.+
T Consensus 138 ~~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 138 KRQVSV----EEAKNRAEQWNV-----NYVETSAKTRANVDK 170 (187)
T ss_dssp GCCSCH----HHHHHHHHHTTC-----EEEECCTTTCTTHHH
T ss_pred cCccCH----HHHHHHHHHcCC-----eEEEeCCCCCCCHHH
Confidence 333222 233444455554 789999999999986
No 75
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.77 E-value=1e-18 Score=162.80 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=99.9
Q ss_pred CcCCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEE
Q 009375 259 KKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY 338 (536)
Q Consensus 259 ~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~ 338 (536)
......+.++|+|+|.+|+|||||+++|++.... ......|.+. ..
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------------------~~~~t~~~~~----~~ 59 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVV------------------------------HTSPTIGSNV----EE 59 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSCE------------------------------EEECCSSSSC----EE
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCC------------------------------ccCCcCceee----EE
Confidence 3345567899999999999999999999853220 0011112211 12
Q ss_pred eecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecc
Q 009375 339 FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKM 415 (536)
Q Consensus 339 ~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKi 415 (536)
+...+..+.||||||+.+|...+...+..+|++|||+|++... .+.....++..++.. .++| +|||+||+
T Consensus 60 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 132 (181)
T 2h17_A 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE------RISVTREELYKMLAHEDLRKAG-LLIFANKQ 132 (181)
T ss_dssp EEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT------THHHHHHHHHHHHTCGGGTTCE-EEEEEECT
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhChhhCCCe-EEEEEECC
Confidence 3346789999999999999888888899999999999998652 122223333333332 3455 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+... ...+++.+ .+....+....++++++||++|+|+.+
T Consensus 133 Dl~~~--~~~~~i~~----~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 133 DVKEC--MTVAEISQ----FLKLTSIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp TSTTC--CCHHHHHH----HTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred CcccC--CCHHHHHH----HhCcccccCCceEEEEccCCCCcCHHH
Confidence 99742 12222322 222122223345899999999999986
No 76
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=6.9e-19 Score=189.21 Aligned_cols=156 Identities=19% Similarity=0.283 Sum_probs=116.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|++|+|||||+++|++....+.. ...|+|.+.....+...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~------------------------------~~~gtt~~~~~~~~~~~~ 242 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS------------------------------NVAGTTRDAVDTSFTYNQ 242 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------------C------CTTSEEEEETT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccC------------------------------CCCCeEEEEEEEEEEECC
Confidence 45789999999999999999999954322211 224555554444556678
Q ss_pred eEEEEEeCCC----------cccchhh-HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEE
Q 009375 344 YHVVVLDSPG----------HKDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (536)
Q Consensus 344 ~~i~LIDTPG----------h~df~~~-~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVI 412 (536)
..++|||||| ++.|... ...++..+|++|+|+|++.+ +..+..+++.++...++| +|||+
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~--------~~~~~~~~~~~~~~~~~~-~ilv~ 313 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG--------IIEQDKRIAGYAHEAGKA-VVIVV 313 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCE-EEEEE
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------cCHHHHHHHHHHHHcCCC-EEEEE
Confidence 8999999999 5556544 34577889999999999987 456788888888888887 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
||+|+.......++++.+.+...+...++ ++++++||++|+||.++
T Consensus 314 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~SA~~g~gv~~l 359 (456)
T 4dcu_A 314 NKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFMSALTKKRIHTL 359 (456)
T ss_dssp ECGGGSCCCSSHHHHHHHHHHHHCGGGTT----SCEEECCTTTCTTGGGH
T ss_pred EChhcCCCchHHHHHHHHHHHHhcccCCC----CCEEEEcCCCCcCHHHH
Confidence 99999876666677777777777655443 47899999999999874
No 77
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.9e-18 Score=161.43 Aligned_cols=153 Identities=19% Similarity=0.166 Sum_probs=103.7
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
+..+.++|+|+|++|+|||||+++|++..... ...+..+++.......+..
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 61 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDP-----------------------------ELAATIGVDFKVKTISVDG 61 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCCSEEEEEEEEEETT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------cCCCccceEEEEEEEEECC
Confidence 34567999999999999999999998532110 1112234444444444555
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc----CCCcEEEEEecccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----~vp~vIVVINKiDl 417 (536)
....+.||||||+..|...+...++.+|++|||+|++.... + .....++..+... ++ ++|||+||+|+
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~~-p~ilv~nK~Dl 133 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT------F-VKLDNWLNELETYCTRNDI-VNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH------H-HTHHHHHHHHTTCCSCSCC-EEEEEEECTTS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH------H-HHHHHHHHHHHHhcCcCCC-cEEEEEECCcC
Confidence 56789999999999998888888999999999999986421 1 1122233333332 34 48999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... .... +.+..+++..++ +++++||++|+||.+
T Consensus 134 ~~~-~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 134 ENR-EVDR----NEGLKFARKHSM-----LFIEASAKTCDGVQC 167 (195)
T ss_dssp SSC-CSCH----HHHHHHHHHTTC-----EEEECCTTTCTTHHH
T ss_pred ccc-ccCH----HHHHHHHHHcCC-----EEEEecCCCCCCHHH
Confidence 532 1111 223344444443 789999999999986
No 78
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.77 E-value=5e-18 Score=157.57 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=100.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+.++|+|+|++|+|||||+++|++..... ...+.++.+.....+...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-------------------------------DSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-------------------------------TCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-------------------------------CCCCccceEEEEEEEEECC
Confidence 567999999999999999999998532211 011222222222223333
Q ss_pred -CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccc
Q 009375 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 -~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~ 418 (536)
...+.||||||+..|...+...+..+|++|||+|++.... +. .....+..+.. .++| +|||+||+|+.
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~-~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 128 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET------YN-ALTNWLTDARMLASQNIV-IILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH------HH-THHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH------HH-HHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 3689999999999999988899999999999999986421 11 11222222222 3455 99999999997
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.......+ ++..+....++ +++++||++|+|+.+
T Consensus 129 ~~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 129 ADREVTFL----EASRFAQENEL-----MFLETSALTGENVEE 162 (186)
T ss_dssp GGCCSCHH----HHHHHHHHTTC-----EEEECCTTTCTTHHH
T ss_pred cccccCHH----HHHHHHHHcCC-----EEEEecCCCCCCHHH
Confidence 43222222 23344444443 789999999999986
No 79
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=6.7e-19 Score=164.59 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=96.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++..... ..+..|.+. ..+...+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~ 59 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH------------------------------TSPTIGSNV----EEIVINN 59 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE------------------------------EECCSCSSC----EEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------CcCCCccce----EEEEECC
Confidence 457899999999999999999998432110 001112111 1233467
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||++++...+...+..+|++|||+|++.+. .+.....+...++.. .+.| +|||+||+|+...
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE------RISVTREELYKMLAHEDLRKAG-LLIFANKQDVKEC 132 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT------THHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCC
Confidence 89999999999999888888899999999999998752 122233333333332 3455 9999999999742
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++.+. +....+....++++++||++|+|+.+
T Consensus 133 --~~~~~i~~~----~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 133 --MTVAEISQF----LKLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp --CCHHHHHHH----HTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred --CCHHHHHHH----hChhhhcCCCcEEEEccCCCCcCHHH
Confidence 222333322 22212223346899999999999986
No 80
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.77 E-value=3.6e-18 Score=157.98 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=100.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|++|+|||||+++|++....... ....+.... ....+....
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~-----------------------------~~t~~~~~~-~~~~~~~~~ 52 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----------------------------IPTVFDNYS-ANVMVDGKP 52 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSC-----------------------------CCCSCCEEE-EEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCc-----------------------------CCcccceeE-EEEEECCEE
Confidence 56799999999999999999999853211000 000111111 112233345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||++.|...+...++.+|++|||+|++.+.. +......++..+... ++| +|||+||+|+....
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS------FENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 125 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh------HHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccc
Confidence 678899999999998888888999999999999986421 111211333444443 556 99999999997531
Q ss_pred hhHHHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+.+ .++...+.+..++ ++++++||++|+|+.+
T Consensus 126 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 169 (186)
T 1mh1_A 126 -DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 169 (186)
T ss_dssp -HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -hhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCHHH
Confidence 111111 1233344444443 3789999999999986
No 81
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.77 E-value=2.3e-18 Score=158.34 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=98.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|++|+|||||+++|++..... ......+.... ....+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~ 55 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVS-----------------------------DYDPTIEDSYT-KICSVDGI 55 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCS-----------------------------SCCTTCCEEEE-EEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCcc-----------------------------ccCCCcCceEE-EEEEECCE
Confidence 3567999999999999999999998542110 00011122211 11222223
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+.+|...+...+..+|++|+|+|++... . +.....+...++.. .++| +|||+||+|+..
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 128 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ---S---FNEVGKLFTQILRVKDRDDFP-VVLVGNKADLES 128 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 467899999999999888888889999999999998642 1 11122222222232 3556 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......+ ....+....+ ++++++||++|+|+.+
T Consensus 129 ~~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 129 QRQVPRS----EASAFGASHH-----VAYFEASAKLRLNVDE 161 (181)
T ss_dssp GCCSCHH----HHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred ccccCHH----HHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 3222222 2233333444 3789999999999986
No 82
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=4.1e-18 Score=155.11 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=102.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+|+|.+|+|||||+++|++...... .....+.+.. ....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~t~~~~~~-~~~~~~~~~~ 51 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRES-----------------------------YIPTVEDTYR-QVISCDKSIC 51 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSS-----------------------------CCCCSCEEEE-EEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCCccccEE-EEEEECCEEE
Confidence 468999999999999999999985321100 0001111111 1122333446
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-----cCCCcEEEEEecccccc
Q 009375 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-----~~vp~vIVVINKiDl~~ 419 (536)
.+.||||||+.+|...+...+..+|++|+|+|++.... + ......+..+.. .++| ++||+||+|+..
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~-~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~ 123 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS------L-EELKPIYEQICEIKGDVESIP-IMLVGNKCDESP 123 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH------H-HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH------H-HHHHHHHHHHHHHhCCCCCCC-EEEEEEcccccc
Confidence 79999999999999888888899999999999986421 1 112222222322 2455 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 484 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l 484 (536)
....... ....+...+++ +++++||++|.|+.+ |++.|...
T Consensus 124 ~~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~---------------l~~~l~~~ 164 (172)
T 2erx_A 124 SREVQSS----EAEALARTWKC-----AFMETSAKLNHNVKE---------------LFQELLNL 164 (172)
T ss_dssp GCCSCHH----HHHHHHHHHTC-----EEEECBTTTTBSHHH---------------HHHHHHHT
T ss_pred ccccCHH----HHHHHHHHhCC-----eEEEecCCCCcCHHH---------------HHHHHHHH
Confidence 3222211 22233344443 789999999999986 88887554
No 83
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.77 E-value=1.3e-18 Score=162.88 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=98.4
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009375 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
...++.++|+|+|.+|+|||||+++|++..... ...+..+++.......+.
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~ 65 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-----------------------------RTEATIGVDFRERAVDID 65 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------------SCCCCCSCCEEEEEEEET
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCcceEEEEEEEEEC
Confidence 345678999999999999999999998532111 001112222322333333
Q ss_pred cCCeEEEEEeCCCcccch-hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009375 341 SKNYHVVVLDSPGHKDFV-PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~-~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
.....+.||||||+++|. ..+...++.+|++|||+|++... .+..+..+..+....+...++| +|||+||+|+..
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 141 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA---SFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRS 141 (189)
T ss_dssp TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGG
T ss_pred CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 334689999999999887 66777889999999999998642 1111111112221111123455 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccC---CCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN---QNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~G---enI~e 461 (536)
...... +.+..+....++ +++++||++| +||.+
T Consensus 142 ~~~v~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 142 AIQVPT----DLAQKFADTHSM-----PLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp GCCSCH----HHHHHHHHHTTC-----CEEECCSSSGGGGSCHHH
T ss_pred cceeCH----HHHHHHHHHcCC-----EEEEEeCCcCCcccCHHH
Confidence 322222 223344444554 7899999999 78764
No 84
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=6.8e-19 Score=166.64 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=98.6
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
...+.++|+|+|.+|+|||||+++|++..... ......|++.......+..
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 74 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-----------------------------NISATLGVDFQMKTLIVDG 74 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------------------CEEEEEEETT
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------------cCCCCccceeEEEEEEECC
Confidence 34567999999999999999999998532110 0011223333333334444
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 418 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~ 418 (536)
....+.||||||+.+|...+...++.+|++|||+|++.+.. + ......+..+... ++| +|||+||+|+.
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 146 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS------F-LNIREWVDMIEDAAHETVP-IMLVGNKADIR 146 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHC---CC-EEEEEECGGGH
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH------H-HHHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 55779999999999999888888999999999999986421 1 1122233333332 556 99999999997
Q ss_pred ccchh-HHHH-HHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 419 QYSKD-RFDS-IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e-~~ee-i~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... .... ..+....+....++ +++++||++|+||.+
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGA-----LFCETSAKDGSNIVE 186 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTC-----EEEECCTTTCTTHHH
T ss_pred cccccccccccCHHHHHHHHHHcCC-----eEEEeeCCCCCCHHH
Confidence 31100 0000 11233344444454 789999999999986
No 85
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.77 E-value=5.1e-18 Score=160.05 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=100.4
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|.+|+|||||+++|++...... .....+... .....+...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~ 60 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED-----------------------------YEPTKADSY-RKKVVLDGE 60 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----------------------------CCTTCCEEE-EEEEEETTE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCccceEE-EEEEEECCE
Confidence 45679999999999999999999985431100 001112211 111223333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+.+|...+..++..+|++|+|+|++... . +.....+...+.... ++| +|||+||+|+..
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 133 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---S---FAATADFREQILRVKEDENVP-FLLVGNKSDLED 133 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccc
Confidence 458999999999999988888899999999999998642 1 111222222222222 555 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......++ +..+++..++ +++++||++|+|+.+
T Consensus 134 ~~~~~~~~----~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 134 KRQVSVEE----AKNRAEQWNV-----NYVETSAKTRANVDK 166 (206)
T ss_dssp GCCSCHHH----HHHHHHHHTC-----EEEEECTTTCTTHHH
T ss_pred cccccHHH----HHHHHHHhCC-----eEEEEeCCCCCCHHH
Confidence 33333333 3334444454 789999999999986
No 86
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.77 E-value=1.7e-18 Score=160.61 Aligned_cols=150 Identities=18% Similarity=0.143 Sum_probs=94.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++........ ...+ +.......+....
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------------------~t~~-~~~~~~~~~~~~~ 51 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYD-----------------------------PTIE-DSYRKQVVIDGET 51 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCC-----------------------------TTCC-EEEEEEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCC-----------------------------CCch-heEEEEEEECCcE
Confidence 357899999999999999999998533111000 0001 1111122233334
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEecccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~~ 419 (536)
..+.||||||++.|...+..++..+|++|+|+|++... . +.. ....+..+.. .++| +|||+||+|+..
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~-~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---S---FED-IHHYREQIKRVKDSEDVP-MVLVGNKCDLPS 123 (189)
T ss_dssp EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHH---H---HHH-HHHHHHHHHHHTTCSCCC-EEEEEECTTSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---H---HHH-HHHHHHHHHHhcCCCCCc-EEEEEECccCcc
Confidence 56888999999999888888899999999999998642 1 111 2222222222 2555 999999999974
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. .... +.+..+.+.+++ +++++||++|+|+.+
T Consensus 124 ~-~~~~----~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 124 R-TVDT----KQAQDLARSYGI-----PFIETSAKTRQGVDD 155 (189)
T ss_dssp C-SSCH----HHHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred c-ccCH----HHHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 2 1121 223334444454 789999999999986
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=2.7e-18 Score=155.89 Aligned_cols=148 Identities=19% Similarity=0.172 Sum_probs=97.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|++|+|||||+++|++.... . ..+..+. ....+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~---------------------------~---~~~t~~~----~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV---------------------------T---TIPTIGF----NVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS---------------------------C---CCCCSSC----CEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC---------------------------c---ccCcCce----eEEEEEECCEEE
Confidence 57999999999999999999843210 0 0111121 122344577899
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 009375 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||+..|...+...+..+|++|||+|++... .+.....+...++.. .+.| +|||+||+|+... .
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~--~ 117 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA--M 117 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC--C
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCC--C
Confidence 99999999999888888899999999999998642 122222233333322 2455 9999999999743 2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+++.+.+. ...+....++++++||++|.|+.+
T Consensus 118 ~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (164)
T 1r8s_A 118 NAAEITDKLG----LHSLRHRNWYIQATCATSGDGLYE 151 (164)
T ss_dssp CHHHHHHHTT----GGGCSSCCEEEEECBTTTTBTHHH
T ss_pred CHHHHHHHhC----cccccCccEEEEEcccCCCcCHHH
Confidence 2223322221 111222345799999999999986
No 88
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=8.8e-19 Score=164.57 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=106.9
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++..... ......|++.......+...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 70 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------------------AFVSTVGIDFKVKTVYRHEK 70 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------------------CEEEEETTTEEEEEEEETTT
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------------------ccCCCeeeEEEEEEEEECCE
Confidence 3567999999999999999999998532111 01112344444455556667
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~ 419 (536)
...+.||||||++.|...+...++.+|++|||+|++... . + ......+..+... ++| +|||+||+|+..
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~-~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 142 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---S---F-NAVQDWATQIKTYSWDNAQ-VILVGNKCDMEE 142 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHH---H---H-HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHH---H---H-HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 889999999999999998889999999999999998642 1 1 2223344444442 445 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......+ .+..+.+..++ +++++||++|.||.+
T Consensus 143 ~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 143 ERVVPTE----KGQLLAEQLGF-----DFFEASAKENISVRQ 175 (191)
T ss_dssp GCCSCHH----HHHHHHHHHTC-----EEEECBTTTTBSHHH
T ss_pred ccccCHH----HHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 3322222 23334444454 789999999999986
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.77 E-value=5.9e-18 Score=152.62 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
|+.++|+|+|.+|+|||||+++|++....... ....+... .....+....
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------------------------~~~~~~~~-~~~~~~~~~~ 50 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEC-----------------------------DPTIEDSY-RKQVVIDGET 50 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCC-----------------------------CTTCCEEE-EEEEEETTEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCcccc-----------------------------CCccceEE-EEEEEECCEE
Confidence 35689999999999999999999853211000 00011111 1112233344
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc----CCCcEEEEEecccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----~vp~vIVVINKiDl~~ 419 (536)
..+.||||||+.++...+...+..+|++|+|+|+.... . + ......+..+... ++| ++||+||+|+..
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~---~-~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---S---F-EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH---H---H-HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSC
T ss_pred EEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH---H---H-HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhh
Confidence 67899999999999888888889999999999998541 1 1 1222333333322 566 999999999875
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. .... +.+..+.+..++ +++++||++|.|+.+
T Consensus 123 ~-~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 123 R-TVES----RQAQDLARSYGI-----PYIETSAKTRQGVED 154 (166)
T ss_dssp C-CSCH----HHHHHHHHHHTC-----CEEEECTTTCTTHHH
T ss_pred c-ccCH----HHHHHHHHHcCC-----eEEEecCCCCCCHHH
Confidence 2 2222 233344444554 789999999999986
No 90
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.77 E-value=2.1e-18 Score=157.08 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=97.1
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|++|+|||||+++|++...... ..+..+.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS-----------------------------FITTIGIDFKIKTVDINGKKV 52 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC------------------------------------CCEEEEEEESSSCEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------------------CCCccceeEEEEEEEECCEEE
Confidence 358999999999999999999985322110 001112222222222333346
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 009375 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~ 421 (536)
.+.||||||+..+...+...+..+|++|||+|++.... + ......+..+... ++| +|||+||+|+...
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~- 123 (170)
T 1g16_A 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT------F-TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETR- 123 (170)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTC-
T ss_pred EEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhcCCCCc-EEEEEECccCCcC-
Confidence 79999999999998888888999999999999986421 1 1222333333332 455 9999999999432
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... +.+..+.+..++ +++++||++|+|+.+
T Consensus 124 ~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 124 VVTA----DQGEALAKELGI-----PFIESSAKNDDNVNE 154 (170)
T ss_dssp CSCH----HHHHHHHHHHTC-----CEEECBTTTTBSHHH
T ss_pred ccCH----HHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 2222 223334444454 789999999999986
No 91
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=162.12 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=100.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++..... ...+..|++.......+...
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 73 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCE-----------------------------ACKSTVGVDFKIKTVELRGK 73 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC-------------------------------------CCTTEEEEEEEEEETTE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CCCCccceeEEEEEEEECCe
Confidence 3567999999999999999999998532110 00112233333333333333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+..|...+...++.+|++|||+|++.+.. + ......+..+... ++| +|||+||+|+..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s------~-~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~ 145 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET------F-DDLPKWMKMIDKYASEDAE-LLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH------H-HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 4689999999999999888889999999999999986521 1 1122333344443 444 999999999975
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......+ ++..+.+.+. .++++++||++|+|+.+
T Consensus 146 ~~~v~~~----~~~~~~~~~~----~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 146 DREITRQ----QGEKFAQQIT----GMRFCEASAKDNFNVDE 179 (192)
T ss_dssp GCCSCHH----HHHHHHHTST----TCEEEECBTTTTBSHHH
T ss_pred ccccCHH----HHHHHHHhcC----CCeEEEEeCCCCCCHHH
Confidence 3222222 2233333321 34789999999999986
No 92
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.77 E-value=3.6e-18 Score=155.37 Aligned_cols=148 Identities=18% Similarity=0.085 Sum_probs=83.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||+++|++...... ....+.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~------------------------------~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE------------------------------AEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC------------------------------CCccccceE-EEEEECCEEEE
Confidence 57899999999999999999984322111 111233332 12234445567
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEecccccccc
Q 009375 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~~~~ 421 (536)
+.+|||||+..|...+...++.+|++|+|+|++... . +.. ....+..+.. .++| +|||+||+|+....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~-~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG---S---FEK-ASELRVQLRRARQTDDVP-IILVGNKSDLVRSR 122 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHH---H---HHH-HHHHHHHHHHCC---CCC-EEEEEECTTCCSSC
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH---H---HHH-HHHHHHHHHHhcCCCCCC-EEEEEecccccccc
Confidence 899999999999888888889999999999998641 1 222 2222222322 2556 99999999997533
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....+ ....+....++ +++++||++|+|+.+
T Consensus 123 ~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 123 EVSVD----EGRACAVVFDC-----KFIETSAALHHNVQA 153 (166)
T ss_dssp CSCHH----HHHHHHHHTTC-----EEEECBGGGTBSHHH
T ss_pred ccCHH----HHHHHHHHhCC-----cEEEeccCCCCCHHH
Confidence 32222 22333444443 789999999999986
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.77 E-value=2.7e-18 Score=159.90 Aligned_cols=151 Identities=18% Similarity=0.226 Sum_probs=100.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++.. ... ..+..+.+ ...+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~----------------------------~~~t~~~~----~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDT----------------------------ISPTLGFN----IKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSS----------------------------CCCCSSEE----EEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCc----------------------------ccccCccc----eEEEEECC
Confidence 567999999999999999999999533 100 01112222 22334468
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||++++...+...+..+|++|+|+|++... .+.....+...++.. .++| +|||+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ------RMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 89999999999999888888999999999999998652 122222233333332 2455 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++.+ .+....+....++++++||++|+|+.+
T Consensus 135 --~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 135 --LSCNAIQE----ALELDSIRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp --CCHHHHHH----HTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHH----HhChhhccCCceEEEEeeCCCCCCHHH
Confidence 22223322 222111223456899999999999986
No 94
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.76 E-value=3.2e-18 Score=160.31 Aligned_cols=151 Identities=18% Similarity=0.224 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++..... ......|.|.......+ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~---~ 68 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLA-----------------------------RTSSKPGKTQTLNFYII---N 68 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-----------------------------ccCCCCCceeeEEEEEE---C
Confidence 457899999999999999999998542110 00112333433333332 2
Q ss_pred eEEEEEeCCC----------cccchhhHhhhccc---CCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEE
Q 009375 344 YHVVVLDSPG----------HKDFVPNMISGATQ---SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (536)
Q Consensus 344 ~~i~LIDTPG----------h~df~~~~~~~l~~---aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIV 410 (536)
..+.|||||| +..|...+...+.. +|++|+|+|++.+. .....+.+..+...++| +|+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~i~ 139 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAP--------SNDDVQMYEFLKYYGIP-VIV 139 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEE
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEE
Confidence 3699999999 45554444444444 49999999998752 23444556666677777 999
Q ss_pred EEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 411 VINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+||+|+.. ...+....+++...+.. ...++++++||++|+|+.+
T Consensus 140 v~nK~Dl~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 140 IATKADKIP--KGKWDKHAKVVRQTLNI----DPEDELILFSSETKKGKDE 184 (195)
T ss_dssp EEECGGGSC--GGGHHHHHHHHHHHHTC----CTTSEEEECCTTTCTTHHH
T ss_pred EEECcccCC--hHHHHHHHHHHHHHHcc----cCCCceEEEEccCCCCHHH
Confidence 999999984 33344444445443321 1245899999999999986
No 95
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.76 E-value=1.5e-18 Score=161.91 Aligned_cols=165 Identities=14% Similarity=0.105 Sum_probs=99.8
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEE-Eeec
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA-YFDS 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~-~~~~ 341 (536)
..+.++|+|+|.+|+|||||++.|.+.......... ........+..|.+...... .+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~-------------------~~~~~~~~~t~~~~~~~~~~~~~~~ 71 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEM-------------------VSLATEDERTLFFDFLPLDIGEVKG 71 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCC-------------------EEEECSSCEEEEEEECCSSCCCSSS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccc-------------------cccccccccceeeeecccccccccC
Confidence 356799999999999999999777643211100000 00000001111111111001 1233
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-----CCCcEEEEEeccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMD 416 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-----~vp~vIVVINKiD 416 (536)
....+.||||||++.|...+..+++.+|++|||+|++.+...... .....+..++... ++| +|||+||+|
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~----~s~~~l~~~l~~~~~~~~~~p-iilv~NK~D 146 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANA----ESMRNMRENLAEYGLTLDDVP-IVIQVNKRD 146 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHH----HHHHHHHHHHHHTTCCTTSSC-EEEEEECTT
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhH----HHHHHHHHHHHhhccccCCCC-EEEEEEchh
Confidence 456799999999999999999999999999999999854211111 1112222333332 445 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... ... +++..+++..++ .+++++||++|+|+.+
T Consensus 147 l~~~--~~~----~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~ 181 (198)
T 3t1o_A 147 LPDA--LPV----EMVRAVVDPEGK----FPVLEAVATEGKGVFE 181 (198)
T ss_dssp STTC--CCH----HHHHHHHCTTCC----SCEEECBGGGTBTHHH
T ss_pred cccc--cCH----HHHHHHHHhcCC----ceEEEEecCCCcCHHH
Confidence 9743 222 334445544443 2789999999999986
No 96
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.76 E-value=1.1e-18 Score=174.07 Aligned_cols=151 Identities=22% Similarity=0.200 Sum_probs=107.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+|+|++....+ ...+|+|.+.....+...+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-------------------------------~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRV-------------------------------GNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEE-------------------------------EECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCc-------------------------------cCCCCceEEEEEEEEEECCeEE
Confidence 579999999999999999998643211 1235677776667777788899
Q ss_pred EEEeCCCcccchh----------hHhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009375 347 VVLDSPGHKDFVP----------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 347 ~LIDTPGh~df~~----------~~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
.||||||+..+.. ....++ ..+|++|+|+|++.. .........+..+++| +|||+||
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----------~~~~~l~~~l~~~~~p-vilv~NK 119 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----------ERHLYLTSQLFELGKP-VVVALNM 119 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----------HHHHHHHHHHTTSCSC-EEEEEEC
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----------hhHHHHHHHHHHcCCC-EEEEEEC
Confidence 9999999887754 222334 789999999999852 3344555666677887 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhc
Q 009375 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 484 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l 484 (536)
+|+....... .....+ .+.+++ +++++||++|+|+.+ |++.|..+
T Consensus 120 ~Dl~~~~~~~--~~~~~l---~~~lg~-----~vi~~SA~~g~gi~e---------------l~~~i~~~ 164 (256)
T 3iby_A 120 MDIAEHRGIS--IDTEKL---ESLLGC-----SVIPIQAHKNIGIPA---------------LQQSLLHC 164 (256)
T ss_dssp HHHHHHTTCE--ECHHHH---HHHHCS-----CEEECBGGGTBSHHH---------------HHHHHHTC
T ss_pred hhcCCcCCcH--HHHHHH---HHHcCC-----CEEEEECCCCCCHHH---------------HHHHHHhh
Confidence 9987432111 111222 233343 789999999999986 77777655
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.76 E-value=4.4e-18 Score=159.03 Aligned_cols=151 Identities=20% Similarity=0.216 Sum_probs=100.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++.... ...+..|.+. ..+...+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~------------------------------~~~~t~g~~~----~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS------------------------------HITPTQGFNI----KSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE------------------------------EEEEETTEEE----EEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC------------------------------cccCcCCeEE----EEEEECC
Confidence 45789999999999999999999853210 0112233322 2234457
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||++.|...+..++..+|++|+|+|++... .+.....+...++.. .++| +|||+||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK------RFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG------GHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH------HHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 89999999999999888888899999999999998642 122222222233322 3455 9999999999743
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ..+++.+. +.........++++++||++|+|+.+
T Consensus 133 ~--~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 133 A--PASEIAEG----LNLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp C--CHHHHHHH----TTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred C--CHHHHHHH----hCchhccCCceEEEEccCCCCCCHHH
Confidence 2 22223222 21111223346899999999999986
No 98
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.76 E-value=4.8e-18 Score=161.19 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=101.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|++|+|||||+++|++..... ...+..+++.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-----------------------------DYISTIGVDFKIKTVELDGKT 56 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT-----------------------------TCCCSSCCCEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCcccceeEEEEEEECCEE
Confidence 457899999999999999999998532110 001112233332333333334
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+.+|...+..++..+|++|||+|++.+.. + ......+..+... ++| +|||+||+|+...
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES------F-NGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDK 128 (206)
T ss_dssp EEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH------H-HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTT
T ss_pred EEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH------H-HHHHHHHHHHHHhcCCCCC-EEEEEECCCCccc
Confidence 689999999999998888888999999999999986421 1 1222233333332 344 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ .+..+....++ +++++||++|+||.+
T Consensus 129 ~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 129 RVVEYD----VAKEFADANKM-----PFLETSALDSTNVED 160 (206)
T ss_dssp CCSCHH----HHHHHHHHTTC-----CEEECCTTTCTTHHH
T ss_pred cccCHH----HHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 222222 23334444443 789999999999986
No 99
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.76 E-value=2.4e-18 Score=161.73 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=101.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|.+|+|||||+++|++..... ......+.+... ...+...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~-~~~~~~~ 69 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPT-----------------------------AYVPTVFENFSH-VMKYKNE 69 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEEEE-EEEETTE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------ccCCeeeeeeEE-EEEECCE
Confidence 4567999999999999999999998533110 000111222211 1223334
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~ 420 (536)
...+.||||||++.|...+..+++.+|++|||+|++... .+......++..+... ++| +|||+||+|+...
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT------SFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKD 142 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCT
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccC
Confidence 466799999999999988888999999999999998642 1212123333334333 344 9999999999742
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... ...+++..+.+.+++. .++++||++|+||.+
T Consensus 143 ~~~~--~~~~~~~~~~~~~~~~----~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 143 GSDD--VTKQEGDDLCQKLGCV----AYIEASSVAKIGLNE 177 (194)
T ss_dssp TTTC--CCHHHHHHHHHHHTCS----CEEECBTTTTBSHHH
T ss_pred CCCc--ccHHHHHHHHHhcCCC----EEEEeecCCCCCHHH
Confidence 1111 1123344555555651 289999999999986
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.76 E-value=5.4e-18 Score=161.81 Aligned_cols=158 Identities=22% Similarity=0.232 Sum_probs=94.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+.++|+|+|++|+|||||+++|++..... ....++.......+...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~ 52 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD--------------------------------TQTSITDSSAIYKVNNNR 52 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCC--------------------------------BCCCCSCEEEEEECSSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccc--------------------------------ccCCcceeeEEEEecCCC
Confidence 457899999999999999999998532110 00111112222222222
Q ss_pred CeEEEEEeCCCcccchh-hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-----cCCCcEEEEEeccc
Q 009375 343 NYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMD 416 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~-~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-----~~vp~vIVVINKiD 416 (536)
...+.||||||+.+|.. .+..+++.+|++|||+|++.. ... .......+..++.. .++| +|||+||+|
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 126 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF--QRE---VKDVAEFLYQVLIDSMALKNSPS-LLIACNKQD 126 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH--HHH---HHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTT
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc--CHH---HHHHHHHHHHHHhhhhhcccCCC-EEEEEECCC
Confidence 67899999999999887 556678899999999999751 000 11111222222222 2344 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHH-------------------cCCC---------C--CCccEEEEEcccC------CCcc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRS-------------------CGFK---------D--ASLTWIPLSALEN------QNLV 460 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~-------------------~g~~---------~--~~i~vipvSA~~G------enI~ 460 (536)
+... ...+.+.+.+...+.. .-.. . ..++|+++||++| .||.
T Consensus 127 l~~~--~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~ 204 (214)
T 2fh5_B 127 IAMA--KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQ 204 (214)
T ss_dssp STTC--CCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCH
T ss_pred CCCc--ccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChH
Confidence 9843 2234444555544431 0111 0 1568999999999 9997
Q ss_pred c
Q 009375 461 T 461 (536)
Q Consensus 461 e 461 (536)
+
T Consensus 205 ~ 205 (214)
T 2fh5_B 205 D 205 (214)
T ss_dssp H
T ss_pred H
Confidence 6
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.76 E-value=1.7e-18 Score=159.22 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=92.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
|+.++|+|+|++|+|||||+++|++..... ...+++|++.....+...+
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 49 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYI-------------------------------GNWPGVTVEKKEGEFEYNG 49 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSC-------------------------------C-----CCCCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeec-------------------------------cCCCCcceeeeEEEEEECC
Confidence 356899999999999999999998532111 0112333332233344567
Q ss_pred eEEEEEeCCCcccchh------hHhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009375 344 YHVVVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~------~~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
..+.+|||||+..|.. ....++ ..+|++++|+|+... ......+..+...++| +|+|+||+
T Consensus 50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~p-~ilv~nK~ 118 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNKM 118 (165)
T ss_dssp EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH----------HHHHHHHHHHHHTTCC-EEEEEECH
T ss_pred cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch----------hHhHHHHHHHHhcCCC-EEEEEEch
Confidence 8899999999887641 122333 379999999999752 1222334444556777 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+....... .....+.+.+++ +++++||++|+|+.+
T Consensus 119 Dl~~~~~~~-----~~~~~~~~~~~~-----~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 119 DLAKSLGIE-----IDVDKLEKILGV-----KVVPLSAAKKMGIEE 154 (165)
T ss_dssp HHHHHTTCC-----CCHHHHHHHHTS-----CEEECBGGGTBSHHH
T ss_pred HhccccChh-----hHHHHHHHHhCC-----CEEEEEcCCCCCHHH
Confidence 986421110 012223333343 789999999999986
No 102
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.76 E-value=4.9e-18 Score=160.58 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=98.5
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|++|+|||||+++|++...... .....|.+.......+...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 55 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-----------------------------YKATIGADFLTKEVMVDDR 55 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCCSEEEEEEEEESSSC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCC-----------------------------CCCcccceEEEEEEEECCE
Confidence 35679999999999999999999985432110 0111222222233333334
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEEeccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMD 416 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVINKiD 416 (536)
...+.||||||+..|...+...++.+|++|||+|++.+.. +.....+...+... .++| +|||+||+|
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 128 (207)
T 1vg8_A 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT------FKTLDSWRDEFLIQASPRDPENFP-FVVLGNKID 128 (207)
T ss_dssp EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH------HHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH------HHHHHHHHHHHHHhcccccCCCCc-EEEEEECCC
Confidence 5789999999999998888888999999999999986521 11111222222222 2455 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... ....+ .+..+.... ..++++++||++|.|+.+
T Consensus 129 l~~~-~~~~~----~~~~~~~~~----~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 129 LENR-QVATK----RAQAWCYSK----NNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp SSCC-CSCHH----HHHHHHHHT----TSCCEEECBTTTTBSHHH
T ss_pred Cccc-ccCHH----HHHHHHHhc----CCceEEEEeCCCCCCHHH
Confidence 9732 22222 222333211 234789999999999986
No 103
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=4.5e-18 Score=161.56 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|++|+|||||+++|++..... ...+.++.+.....+...+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-------------------------------SFITTIGIDFKIKTVDING 66 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-------------------------------SSSCCCSCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-------------------------------ccCCcccceEEEEEEEECC
Confidence 456899999999999999999998532111 0111222222222333344
Q ss_pred --eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccc
Q 009375 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 418 (536)
Q Consensus 344 --~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~ 418 (536)
..+.||||||+..|...+..++..+|++|||+|++.... + ......+..+... ++| +|||+||+|+.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 138 (213)
T 3cph_A 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT------F-TNIKQWFKTVNEHANDEAQ-LLLVGNKSDME 138 (213)
T ss_dssp EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHTTTCSE-EEEEEECTTCS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 689999999999998888888999999999999986421 1 1122333333332 455 99999999994
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. .... ..+..+...+++ +++++||++|+||.+
T Consensus 139 ~~-~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 139 TR-VVTA----DQGEALAKELGI-----PFIESSAKNDDNVNE 171 (213)
T ss_dssp SC-CSCH----HHHHHHHHHHTC-----CEEECBTTTTBSSHH
T ss_pred cc-ccCH----HHHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 32 2222 223334444454 689999999999986
No 104
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=2.5e-18 Score=171.50 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=103.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|++|+|||||+++|++....+ ...+|+|+......+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~-------------------------------~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYV-------------------------------ANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEE-------------------------------EECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcc-------------------------------cCCCCceEEEEEEEEEECC
Confidence 457899999999999999999998533211 1225777776666777778
Q ss_pred eEEEEEeCCCcccchhh------Hhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009375 344 YHVVVLDSPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~------~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
..+.||||||+..+... ....+ ..+|++|+|+|++.. .........+...++| +|||+||+
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~----------~~~~~~~~~l~~~~~p-vilv~NK~ 120 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP----------EQSLYLLLEILEMEKK-VILAMTAI 120 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC----------HHHHHHHHHHHTTTCC-EEEEEECH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch----------hhHHHHHHHHHhcCCC-EEEEEECc
Confidence 99999999998876531 12222 579999999999863 1223344555667887 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+....... ..+..+.+.+++ +++++||++|.|+.+
T Consensus 121 Dl~~~~~i~-----~~~~~l~~~lg~-----~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 121 DEAKKTGMK-----IDRYELQKHLGI-----PVVFTSSVTGEGLEE 156 (258)
T ss_dssp HHHHHTTCC-----BCHHHHHHHHCS-----CEEECCTTTCTTHHH
T ss_pred CCCCccchH-----HHHHHHHHHcCC-----CEEEEEeeCCcCHHH
Confidence 987422111 112333344454 789999999999986
No 105
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.76 E-value=7.5e-18 Score=161.15 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=99.4
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
...+.++|+|+|.+|+|||||+++|++..... ......++........+..
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 71 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNP-----------------------------KFITTVGIDFREKRVVYNA 71 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCC-----------------------------EEEEEEEEEEEEEEEEEEC
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCc-----------------------------CCCCceeEEEEEEEEEECC
Confidence 34567999999999999999999998432110 0011112222222222222
Q ss_pred C----------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc------CC
Q 009375 342 K----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GV 405 (536)
Q Consensus 342 ~----------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~------~v 405 (536)
. ...+.||||||+.+|...+...++.+|++|||+|++... .......++..+ ..
T Consensus 72 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~----------s~~~~~~~l~~i~~~~~~~~ 141 (217)
T 2f7s_A 72 QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ----------SFLNVRNWMSQLQANAYCEN 141 (217)
T ss_dssp -------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH----------HHHHHHHHHHTCCCCCTTTC
T ss_pred ccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCcCC
Confidence 2 578999999999999888888999999999999998641 111122222222 22
Q ss_pred CcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 406 p~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.++|||+||+|+........ ..+..+.+..++ +++++||++|+||.+
T Consensus 142 ~piilV~NK~Dl~~~~~v~~----~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 142 PDIVLIGNKADLPDQREVNE----RQARELADKYGI-----PYFETSAATGQNVEK 188 (217)
T ss_dssp CEEEEEEECTTCGGGCCSCH----HHHHHHHHHTTC-----CEEEEBTTTTBTHHH
T ss_pred CCEEEEEECCccccccccCH----HHHHHHHHHCCC-----cEEEEECCCCCCHHH
Confidence 34999999999975322222 233444455554 789999999999986
No 106
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.75 E-value=1.6e-18 Score=159.55 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=87.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-c
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-S 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~ 341 (536)
..+.++|+|+|++|+|||||+++|++....... .+..|.+.......+. .
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 55 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQY-----------------------------KATIGADFLTKEVTVDGD 55 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC--------------------------------CCCSCEEEEECCSSS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCccc-----------------------------CCccceEEEEEEEEEcCC
Confidence 346799999999999999999999853211100 0111121222222222 2
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEEecc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVINKi 415 (536)
....+.||||||+..|...+...++.+|++|+|+|++.... +.....+...+... .++| ++||+||+
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 128 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS------FENIKSWRDEFLVHANVNSPETFP-FVILGNKI 128 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH------HHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECT
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH------HHHHHHHHHHHHHHhcccCcCCCc-EEEEEECC
Confidence 34689999999999998888888999999999999986521 11111111122222 3455 99999999
Q ss_pred cccccch-hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 416 DAVQYSK-DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~-e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+..... ...+ .+..+.+.. ..++++++||++|+|+.+
T Consensus 129 Dl~~~~~~v~~~----~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 129 DAEESKKIVSEK----SAQELAKSL----GDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp TSCGGGCCSCHH----HHHHHHHHT----TSCCEEEEBTTTTBSHHH
T ss_pred ccccccccCCHH----HHHHHHHhc----CCCeEEEEecCCCCCHHH
Confidence 9963221 1122 222333221 134789999999999986
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.75 E-value=5.4e-18 Score=160.20 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=97.8
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccce--EEEEEEEEe
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI--TMTVAVAYF 339 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~Gi--Ti~~~~~~~ 339 (536)
...+.++|+|+|..|+|||||+++|++..... ...++ +.......+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 63 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--------------------------------ETLFLESTNKIYKDDI 63 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG--------------------------------GGGGCCCCCSCEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--------------------------------ceeeeccccceeeeec
Confidence 44678999999999999999999887532111 00111 111111112
Q ss_pred e-cCCeEEEEEeCCCcccchhhH---hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH-Hc-CCCcEEEEEe
Q 009375 340 D-SKNYHVVVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SF-GVDQLIVAVN 413 (536)
Q Consensus 340 ~-~~~~~i~LIDTPGh~df~~~~---~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~-~~-~vp~vIVVIN 413 (536)
. .....+.||||||+++|...+ ..+++.+|++|||+|++... ... + ......+..+. .. ++| +|||+|
T Consensus 64 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~---~-~~~~~~l~~~~~~~~~~p-iilv~n 137 (196)
T 3llu_A 64 SNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY-MEA---L-TRLHITVSKAYKVNPDMN-FEVFIH 137 (196)
T ss_dssp CCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCC-HHH---H-HHHHHHHHHHHHHCTTCE-EEEEEE
T ss_pred cCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCch-HHH---H-HHHHHHHHHHHhcCCCCc-EEEEEe
Confidence 2 456789999999999987776 67889999999999999751 111 1 11112222221 12 455 999999
Q ss_pred cccccccc--hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 414 KMDAVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 414 KiDl~~~~--~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+|+.... .+....+.......+.........++++++||++ +||.+
T Consensus 138 K~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~ 186 (196)
T 3llu_A 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE 186 (196)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHH
T ss_pred ccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHH
Confidence 99987421 1122233333333344433333456899999999 99986
No 108
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.75 E-value=2.3e-18 Score=172.31 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=102.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
|+.++|+|+|++|+|||||+++|++.... ....+|+|++.....+...+
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 49 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQH-------------------------------VGNWPGVTVEKKEGIMEYRE 49 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEE-------------------------------EEECTTSSCEEEEEEEEETT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcc-------------------------------cCCCCCeEEEeeEEEEEECC
Confidence 35689999999999999999999854321 11235666666666777788
Q ss_pred eEEEEEeCCCcccchh------hHhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC-CCcEEEEEec
Q 009375 344 YHVVVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNK 414 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~------~~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~-vp~vIVVINK 414 (536)
..+.||||||+..|.. ....++ ..+|++|+|+|++.+ .........+...+ +| +|+|+||
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~~~~~~~~~~~~~~~~p-~ilv~NK 118 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL----------MRNLFLTLELFEMEVKN-IILVLNK 118 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc----------hhhHHHHHHHHhcCCCC-EEEEEEC
Confidence 8999999999887654 222233 679999999999853 23344445555667 66 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+.......+ ....+.+.+++ +++++||++|.|+.+
T Consensus 119 ~Dl~~~~~~~~-----~~~~l~~~lg~-----~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 119 FDLLKKKGAKI-----DIKKMRKELGV-----PVIPTNAKKGEGVEE 155 (271)
T ss_dssp HHHHHHHTCCC-----CHHHHHHHHSS-----CEEECBGGGTBTHHH
T ss_pred hhcCcccccHH-----HHHHHHHHcCC-----cEEEEEeCCCCCHHH
Confidence 99874211111 12223333443 789999999999986
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=2.9e-18 Score=158.79 Aligned_cols=151 Identities=21% Similarity=0.230 Sum_probs=96.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++..... ..+..|.. ...+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------------~~~t~~~~----~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT------------------------------TKPTIGFN----VETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE------------------------------ECSSTTCC----EEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc------------------------------cCCcCccc----eEEEEECC
Confidence 567999999999999999999998432210 00111221 12233467
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+.++...+...+..+|++|+|+|++... .+.....+...++.. .++| +|||+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD------RMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT------THHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCC
Confidence 89999999999998888888899999999999998652 122222222233322 3444 9999999999742
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++ ...+....+....++++++||++|+|+.+
T Consensus 135 --~~~~~i----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 135 --LSASEV----SKELNLVELKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp --CCHHHH----HHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred --CCHHHH----HHHhCcccccCCceEEEEccCCCCcCHHH
Confidence 222222 23332223333456899999999999986
No 110
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.75 E-value=7e-18 Score=164.14 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=100.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
+++.++|+|+|..|+|||||+++|+...... ...+..|+........+...
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~-----------------------------~~~~Tig~d~~~k~~~~~~~ 60 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-----------------------------TYQATIGIDFLSKTMYLEDR 60 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------------CEEEEEECSSC
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCC-----------------------------CcCCccceEEEEEEEEecce
Confidence 4677999999999999999999998432110 00111222222222334445
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEeccccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~ 420 (536)
...+.||||+|+++|...+..+++.++++|+|+|.+... .|.. ...++..+... .++| +|||+||+|+...
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~---Sf~~---i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~ 133 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVN---SFQQ---TTKWIDDVRTERGSDVI-IMLVGNKTDLADK 133 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHH---HHHT---HHHHHHHHHHHHTTSSE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhH---HHHH---HHHHHHHHHHhcCCCCe-EEEEeeccchHhc
Confidence 577899999999999999999999999999999998642 2222 22222222222 2444 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ +...+.+.+++ +|+++||++|+||.+
T Consensus 134 r~V~~~----e~~~~a~~~~~-----~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 134 RQVSIE----EGERKAKELNV-----MFIETSAKAGYNVKQ 165 (216)
T ss_dssp CCSCHH----HHHHHHHHHTC-----EEEEEBTTTTBSHHH
T ss_pred CcccHH----HHhhHHHHhCC-----eeEEEeCCCCcCHHH
Confidence 333333 33445555564 789999999999986
No 111
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.75 E-value=3.4e-18 Score=164.42 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=105.4
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009375 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
....+.++|+|+|.+|+|||||+++|+..... .......|++.......+.
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~ 60 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------------KKYVATLGVEVHPLVFHTN 60 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHT-----------------------------CEEETTTTEEEEEEEEEET
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCccceeEEEEEEEEC
Confidence 34567899999999999999999997632110 0112335666666655666
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-CCCcEEEEEecccccc
Q 009375 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~vp~vIVVINKiDl~~ 419 (536)
.....+.||||||+..|...+...++.+|++|||+|++.... +.....++..+.... ++| +|||+||+|+..
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT------YKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD 133 (221)
T ss_dssp TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH------HHTHHHHHHHHHHHSTTCC-EEEEEECTTSSS
T ss_pred CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCC-EEEEEECCcccc
Confidence 667889999999999998888888999999999999986521 111222222222222 555 999999999974
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... ....+.+..++ +++++||++|.|+.+
T Consensus 134 ~~~~~------~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 134 RKVKA------KSIVFHRKKNL-----QYYDISAKSNYNFEK 164 (221)
T ss_dssp CSSCG------GGCCHHHHHTC-----EEEECBGGGTBTTTH
T ss_pred ccccH------HHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 32111 11223333343 789999999999986
No 112
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.75 E-value=7e-18 Score=159.33 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=96.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|.+|+|||||+++|++.... ...+..+ .....+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~------------------------------~~~~t~~----~~~~~~~~~ 71 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV------------------------------TTIPTIG----FNVETVEYK 71 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE------------------------------EEEEETT----EEEEEEEET
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc------------------------------ccCCcCc----eeEEEEEEC
Confidence 356799999999999999999999842210 0011122 222334557
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~ 419 (536)
+..+.||||||+++|...+...+..+|++|||+|++.+. .+.....+...++.. .++| +|||+||+|+..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~------s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~ 144 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVQESADELQKMLQEDELRDAV-LLVFANKQDMPN 144 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCC
Confidence 889999999999999888888889999999999998652 122222233233322 2455 999999999974
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ...+++.+.+. ........++++++||++|.|+.+
T Consensus 145 ~--~~~~~i~~~~~----~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 145 A--MPVSELTDKLG----LQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp C--CCHHHHHHHTT----GGGCSSCCEEEEECBTTTTBTHHH
T ss_pred C--CCHHHHHHHhC----cccccCCceEEEECcCCCcCCHHH
Confidence 3 22223332221 111223346799999999999986
No 113
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.75 E-value=1.1e-17 Score=159.45 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=99.9
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|.+|+|||||+++|++....... ....+.. ......+...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-----------------------------~~t~~~~-~~~~~~~~~~ 76 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----------------------------IPTVFDN-YSANVMVDGK 76 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-C-----------------------------CCCSEEE-EEEEEECC-C
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc-----------------------------CCeecce-eEEEEEECCE
Confidence 466799999999999999999999843211000 0000101 1111223334
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~ 420 (536)
...+.||||||+++|...+..+++.+|++|||+|++.+.. +.......+..+... ++| +|||+||+|+...
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 149 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS------FENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 149 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTC
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEechhhccc
Confidence 5667799999999999888889999999999999986421 111212344444444 566 9999999999853
Q ss_pred chhHHHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. ..+.+ .++...+.+..++ .+++++||++|+||.+
T Consensus 150 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 194 (204)
T 4gzl_A 150 KD-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
T ss_dssp HH-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred hh-hhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCHHH
Confidence 21 11111 1334455555554 3689999999999986
No 114
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=162.51 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=97.5
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|.+|+|||||+++|++...... .....+.+. .....+...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~ 70 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG-----------------------------YDPTVENTY-SKIVTLGKD 70 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-----------------------------CCCCSEEEE-EEEEC----
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC-----------------------------CCCccceEE-EEEEEECCE
Confidence 35689999999999999999999995322110 001112222 222233445
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
...+.||||||+.+|...+...++.+|++|+|+|++... .+..+..+...+.......++| +|||+||+|+.....
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 146 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH---SFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPERE 146 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH---HHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCC
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccc
Confidence 678999999999999888888999999999999998642 1111111111111111123556 999999999975332
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+ ....+.+.+++ +++++||++|.|+.+
T Consensus 147 v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 147 VQAV----EGKKLAESWGA-----TFMESSARENQLTQG 176 (201)
T ss_dssp SCHH----HHHHHHHHHTC-----EEEECCTTCHHHHHH
T ss_pred cCHH----HHHHHHHHhCC-----eEEEEeCCCCCCHHH
Confidence 2222 22334444454 789999999999986
No 115
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.75 E-value=4.9e-18 Score=160.15 Aligned_cols=151 Identities=15% Similarity=0.048 Sum_probs=98.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++..... ..+..+.+ ...+..++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~------------------------------~~~t~~~~----~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT------------------------------LQPTWHPT----SEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC------------------------------CCCCCSCE----EEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------cccCCCCC----eEEEEECC
Confidence 456899999999999999999998532110 00112221 22344567
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH---HcCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~---~~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..+...+..+++.+|++|+|+|++.+. .+.....+...++. ..++| +|+|+||+|+..
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~- 138 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE------RFDEARVELDALFNIAELKDVP-FVILGNKIDAPN- 138 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT-
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH------HHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcC-
Confidence 89999999999999888888889999999999998652 12222222223332 13455 999999999974
Q ss_pred chhHHHHHHHHHHHHHHHcC-------CCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCG-------FKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g-------~~~~~i~vipvSA~~GenI~e 461 (536)
....+++ ...+.... .....++++++||++|+|+.+
T Consensus 139 -~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 181 (190)
T 1m2o_B 139 -AVSEAEL----RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 181 (190)
T ss_dssp -CCCHHHH----HHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHH
T ss_pred -CCCHHHH----HHHhCCccccccccccccceEEEEEeECCcCCCHHH
Confidence 2222222 33332211 112346899999999999986
No 116
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.75 E-value=7.8e-18 Score=161.15 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=96.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++..... ......+.+...........
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 58 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEK-----------------------------NYNATVGAVNHPVTFLDDQG 58 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTC-----------------------------EEETTTTEEEEEEEEEBTTS
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeeEEEEEEeCCC
Confidence 4567999999999999999999998432110 01112233222222221112
Q ss_pred C-eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccc
Q 009375 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~-~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~ 418 (536)
. ..+.||||||+..+...+...+..+|++|||+|++.+.. +. .....+..+.. .++| +|||+||+|+.
T Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~-~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (218)
T 4djt_A 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT------CQ-NLARWVKEFQAVVGNEAP-IVVCANKIDIK 130 (218)
T ss_dssp CEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH------HH-THHHHHHHHHHHHCSSSC-EEEEEECTTCC
T ss_pred cEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH------HH-HHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 2 679999999999988777888899999999999987521 11 11222222222 2455 99999999997
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...... ...+..+....+ ++++++||++|.|+.+
T Consensus 131 ~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 131 NRQKIS----KKLVMEVLKGKN-----YEYFEISAKTAHNFGL 164 (218)
T ss_dssp ----CC----HHHHHHHTTTCC-----CEEEEEBTTTTBTTTH
T ss_pred cccccC----HHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Confidence 432211 123334443333 4799999999999986
No 117
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.75 E-value=9.6e-18 Score=156.64 Aligned_cols=153 Identities=18% Similarity=0.115 Sum_probs=88.7
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009375 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
.+.++.++|+|+|.+|+|||||+++|++...... .....+... .....+.
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~ 65 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------------------YDPTIEDSY-RKQVVID 65 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC-----------------------------CCTTCCEEE-EEEEEET
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccc-----------------------------cCCccceEE-EEEEEEC
Confidence 3457789999999999999999999985321100 000011111 1112222
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEeccc
Q 009375 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMD 416 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiD 416 (536)
.....+.||||||+.+|...+...+..+|++|+|+|+..... +. .....+..+.. .++| +|||+||+|
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~-~~~~~~~~i~~~~~~~~~p-~ilv~nK~D 137 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS------FA-DINLYREQIKRVKDSDDVP-MVLVGNKCD 137 (190)
T ss_dssp TEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHH------HH-HHHHHHHHHHHHHTCSCCC-EEEEEECTT
T ss_pred CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH------HH-HHHHHHHHHHHHhCCCCCe-EEEEEECCc
Confidence 334669999999999998888888999999999999986421 11 12222222222 2556 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... .... +.+..+.+..++ +++++||++|+|+.+
T Consensus 138 l~~~-~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 138 LPTR-TVDT----KQAHELAKSYGI-----PFIETSAKTRQGVED 172 (190)
T ss_dssp CSCC-CSCH----HHHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred CCcc-cCCH----HHHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 8752 2222 233344444554 689999999999986
No 118
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=4.1e-18 Score=159.25 Aligned_cols=151 Identities=21% Similarity=0.193 Sum_probs=99.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|++|+|||||+++|++.... . ..+..+.+ ...+...+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~----------------------------~~~t~~~~----~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV--T----------------------------TVPTVGVN----LETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE--E----------------------------ECSSTTCC----EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC--C----------------------------cCCCCceE----EEEEEECC
Confidence 46799999999999999999999742210 0 01111221 12234467
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||++++...+...++.+|++|+|+|++.+. .+.....+...++.. .+.| +|||+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD------RMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT------THHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH------HHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 89999999999998888888889999999999998652 122223333333332 2455 9999999999743
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++.+.+. ...+....++++++||++|+|+.+
T Consensus 139 --~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 139 --ASEAEIAEQLG----VSSIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp --CCHHHHHHHTT----GGGCCSSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHHHhC----hhhccCCceEEEEccCCCccCHHH
Confidence 22222322221 111223345899999999999986
No 119
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.74 E-value=1.1e-17 Score=152.62 Aligned_cols=151 Identities=18% Similarity=0.119 Sum_probs=89.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||+++|++........ ...+.........+......
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 52 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE-----------------------------MENSEDTYERRIMVDKEEVT 52 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-----------------------------------------CEEEEEEEETTEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc-----------------------------CCCcCCeeeEEEEECCeEEE
Confidence 4789999999999999999998533211110 00111111222223334567
Q ss_pred EEEEeCCCcccchh-hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 009375 346 VVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 346 i~LIDTPGh~df~~-~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~ 421 (536)
+.||||||+.++.. .....++.+|++|+|+|++... . +.....+...+.... ++| +|||+||+|+....
T Consensus 53 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 125 (169)
T 3q85_A 53 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR---S---FSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSR 125 (169)
T ss_dssp EEEECCCCC--------CHHHHHCSEEEEEEETTCHH---H---HHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGC
T ss_pred EEEEECCCccccchhhhhhhhccCCEEEEEEECCChH---H---HHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcc
Confidence 88999999988865 3444577799999999998642 1 222223333333332 555 99999999997433
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... +.+..+.+..++ +++++||++|+|+.+
T Consensus 126 ~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 126 EVSL----EEGRHLAGTLSC-----KHIETSAALHHNTRE 156 (169)
T ss_dssp CSCH----HHHHHHHHHTTC-----EEEECBTTTTBSHHH
T ss_pred cCCH----HHHHHHHHHcCC-----cEEEecCccCCCHHH
Confidence 3222 233344445554 789999999999986
No 120
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.5e-18 Score=162.28 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=97.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|++|+|||||+++|++....... .+..+++.......+....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~ 61 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS-----------------------------KSTIGVEFATRTLEIEGKR 61 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------------------------------CCSEEEEEEEETTEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC-----------------------------CCcccceeEEEEEEECCEE
Confidence 45789999999999999999999854321110 0112222222222233233
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||++.|...+..+++.+|++|||+|++.... + .....++..+... ++| +|||+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s------~-~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~ 133 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS------Y-ENCNHWLSELRENADDNVA-VGLIGNKSDLAHL 133 (223)
T ss_dssp EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH------H-HHHHHHHHHHHHHCC--CE-EEEEECCGGGGGG
T ss_pred EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH------H-HHHHHHHHHHHHhCCCCCe-EEEEEECcccccc
Confidence 689999999999998888888999999999999986421 1 1222333333333 455 9999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ .+..+....++ +++++||++|+||.+
T Consensus 134 ~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 134 RAVPTE----ESKTFAQENQL-----LFTETSALNSENVDK 165 (223)
T ss_dssp CCSCHH----HHHHHHHHTTC-----EEEECCCC-CCCHHH
T ss_pred cccCHH----HHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 222222 23344444443 789999999999986
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.1e-17 Score=155.06 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=100.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|..|+|||||+++|++.... ... ....+.... ....+....
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~---------------------------~~t~~~~~~-~~~~~~~~~ 65 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFP--EEY---------------------------VPTVFDHYA-VSVTVGGKQ 65 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCC--CSC---------------------------CCSSCCCEE-EEEESSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--CCC---------------------------CCcccceeE-EEEEECCEE
Confidence 46789999999999999999999854211 000 000111111 111222334
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||+.+|...+..+++.+|++|||+|++.... +......++..+... ++| +|||+||+|+....
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 138 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS------FQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDP 138 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCH
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccc
Confidence 789999999999998888889999999999999986421 111111333444443 566 99999999997531
Q ss_pred hhHHHH---------HHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~ee---------i~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ..+. ..++...+.+.+++ .+++++||++|+||.+
T Consensus 139 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 182 (194)
T 2atx_A 139 K-TLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKT 182 (194)
T ss_dssp H-HHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHH
T ss_pred c-chhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCHHH
Confidence 1 0000 02334444555553 3689999999999986
No 122
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.74 E-value=4.2e-18 Score=161.77 Aligned_cols=151 Identities=16% Similarity=0.089 Sum_probs=94.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++..... ..+..+.+ ...+..++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~------------------------------~~~t~~~~----~~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ------------------------------HVPTLHPT----SEELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------------------------------------CCCCCS----CEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------cCCCCCce----eEEEEECC
Confidence 456899999999999999999998432110 00011111 11234466
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||++.|...+..+++.+|++|+|+|++... .+.....+...++.. .++| +|+|+||+|+..
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~- 140 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE------RLLESKEELDSLMTDETIANVP-ILILGNKIDRPE- 140 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTT-
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHhCcccCCCc-EEEEEECCCccc-
Confidence 89999999999998888888899999999999998642 122222233333322 3555 999999999974
Q ss_pred chhHHHHHHHHHHHHHHHcC---------CC---CCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCG---------FK---DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g---------~~---~~~i~vipvSA~~GenI~e 461 (536)
....+++ ..++.... +. ...++++++||++|+|+.+
T Consensus 141 -~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 141 -AISEERL----REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp -CCCHHHH----HHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred -cCCHHHH----HHHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence 2222333 33332211 11 1346899999999999986
No 123
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=7.3e-18 Score=156.95 Aligned_cols=146 Identities=21% Similarity=0.242 Sum_probs=98.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|++|+|||||+++|++.... ....+++|.+.....+...+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 53 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY-------------------------------IGNWPGVTVEKKEGEFEYNG 53 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSCCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-------------------------------ccCCCCeeccceEEEEEeCC
Confidence 56789999999999999999999853211 11123455554445566678
Q ss_pred eEEEEEeCCCcccchh------hHhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009375 344 YHVVVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~------~~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
..+.||||||+..|.. .....+ ..+|++++|+|+... ......+..+...+.| +|+|+||+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~p-iilv~nK~ 122 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNKM 122 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH----------HHHHHHHHHHHTTTCC-EEEEEECH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH----------HHHHHHHHHHHhcCCC-EEEEEEhh
Confidence 8999999999888741 222333 348999999998741 2333444455556776 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+....... ..+..+.+.+++ +++++||++|+|+.+
T Consensus 123 Dl~~~~~~~-----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 123 DLAKSLGIE-----IDVDKLEKILGV-----KVVPLSAAKKMGIEE 158 (188)
T ss_dssp HHHHHTTCC-----CCHHHHHHHHTS-----CEEECBGGGTBSHHH
T ss_pred hccccccch-----HHHHHHHHHhCC-----CeEEEEecCCCCHHH
Confidence 987421110 122333333443 789999999999986
No 124
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=159.52 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=85.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|.+|+|||||+++|++....... ....+... .....+...
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-----------------------------~~t~~~~~-~~~~~~~~~ 80 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESY-----------------------------TPTVFERY-MVNLQVKGK 80 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC------------------------------------CCCCCEEE-EEEEEETTE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------------------CCccceeE-EEEEEECCE
Confidence 356799999999999999999999843210000 00011111 111223334
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~ 420 (536)
...+.||||||+++|...+...+..+|++|||+|++... .+......++..+... ++| +|||+||+|+...
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 153 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN------SFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKD 153 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHH------HHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSC
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhcc
Confidence 457999999999999888888899999999999998642 1111111233333332 555 9999999999853
Q ss_pred chhHHHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ...+.+ .++...+.+.+++ .+++++||++|+||.+
T Consensus 154 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~e 198 (214)
T 2j1l_A 154 K-SLVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNVHA 198 (214)
T ss_dssp H-HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSHHH
T ss_pred c-hhhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCHHH
Confidence 1 111111 1233455555553 3789999999999986
No 125
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.8e-17 Score=155.47 Aligned_cols=150 Identities=19% Similarity=0.123 Sum_probs=97.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++....... ....+.+.. ....+....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~t~~~~~~-~~~~~~~~~ 55 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY-----------------------------IPTIEDTYR-QVISCDKSV 55 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT-----------------------------SCCCCEEEE-EEEEETTEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc-----------------------------cCcccccee-EEEEECCEE
Confidence 45689999999999999999999853211000 001111111 112233345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-----cCCCcEEEEEeccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-----~~vp~vIVVINKiDl~ 418 (536)
..+.||||||+.+|...+...+..+|++|+|+|++... . +. .....+..+.. .++| +|||+||+|+.
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~-~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~ 127 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ---S---LE-ELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET 127 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH---H---HH-TTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH---H---HH-HHHHHHHHHHHHhcCCCCCC-EEEEEECccCC
Confidence 67999999999999888888889999999999998642 1 11 11122222222 2455 99999999997
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. ....+ .+..+...+++ +++++||++|+|+.+
T Consensus 128 ~~-~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 128 QR-EVDTR----EAQAVAQEWKC-----AFMETSAKMNYNVKE 160 (199)
T ss_dssp SC-SSCHH----HHHHHHHHHTC-----EEEECBTTTTBSHHH
T ss_pred cc-ccCHH----HHHHHHHHhCC-----eEEEEecCCCCCHHH
Confidence 42 12222 22333444443 789999999999986
No 126
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.2e-17 Score=156.23 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=99.8
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.+..++|+|+|.+|+|||||+++|++....... .+..+..... ...+...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~t~~~~~~~-~~~~~~~ 71 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY-----------------------------VPTVFENYVA-DIEVDGK 71 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC------------------------------------CCEEEE-EEEETTE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC-----------------------------CCcccceEEE-EEEECCE
Confidence 356789999999999999999999853221100 0011111111 1122333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~ 420 (536)
...+.||||||+++|...+..++..+|++|||+|++... .+......++..+... ++| +|||+||+|+...
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD------SLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSD 144 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH------HHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhcc
Confidence 467899999999999888888899999999999998641 1222223344444443 566 9999999999753
Q ss_pred chhHHHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ...+.+ ..+...+...+++ .+++++||++|+|+.+
T Consensus 145 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~e 189 (207)
T 2fv8_A 145 E-HVRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGVRE 189 (207)
T ss_dssp H-HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred c-cchhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCHHH
Confidence 1 111111 1123333444442 3789999999999986
No 127
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.74 E-value=4.3e-18 Score=181.53 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=108.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|+.|+|||||+++|++..... .+..+|+|++.....+...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------------------------VSDYAGTTTDPVYKSMELHP 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------------------------cCCCCCeeeeeEEEEEEECC
Confidence 457899999999999999999999543221 12235556655555555554
Q ss_pred e-EEEEEeCCCcccchh-------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009375 344 Y-HVVVLDSPGHKDFVP-------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 344 ~-~i~LIDTPGh~df~~-------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
. .++||||||+.+|.. .+...+..+|++|||+|+ + ...+...++..+...++| +|+|+||+
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~--------~~~~~~~~l~~l~~~~~p-iIvV~NK~ 150 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--A--------PTPYEDDVVNLFKEMEIP-FVVVVNKI 150 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--S--------CCHHHHHHHHHHHHTTCC-EEEECCCC
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--C--------ChHHHHHHHHHHHhcCCC-EEEEEeCc
Confidence 4 899999999987643 245678889999999998 3 346778888888888888 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhc
Q 009375 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 484 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l 484 (536)
|+...... +....+.+.++ ++++++||++|+|+.+ |++.|...
T Consensus 151 Dl~~~~~~------~~~~~l~~~~g-----~~v~~vSAktg~gI~e---------------L~~~L~~~ 193 (423)
T 3qq5_A 151 DVLGEKAE------ELKGLYESRYE-----AKVLLVSALQKKGFDD---------------IGKTISEI 193 (423)
T ss_dssp TTTTCCCT------HHHHHSSCCTT-----CCCCCCSSCCTTSTTT---------------HHHHHHHH
T ss_pred CCCCccHH------HHHHHHHHHcC-----CCEEEEECCCCCCHHH---------------HHHHHHHh
Confidence 99854332 22223332333 3789999999999986 88888543
No 128
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.74 E-value=2.4e-17 Score=156.32 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=101.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++....... .+..+.... ....+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~t~~~~~~-~~~~~~~~~ 72 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-----------------------------VPTVFENYI-ADIEVDGKQ 72 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-----------------------------CCSSCCCCE-EEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCccc-----------------------------CCcccceEE-EEEEECCEE
Confidence 45789999999999999999999853321100 000111111 112233334
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||+++|...+..++..+|++|||+|++... .+......++..+... ++| +|||+||+|+....
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 145 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD------SLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDE 145 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCH
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCc
Confidence 67999999999999888888899999999999998641 1222223344444444 566 99999999998531
Q ss_pred hhHHHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+.+ .++...+.+.+++ .+++++||++|+||.+
T Consensus 146 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 189 (201)
T 2gco_A 146 -HTRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGVRE 189 (201)
T ss_dssp -HHHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -cchhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCHHH
Confidence 111111 1234444555543 3789999999999986
No 129
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.74 E-value=7.4e-18 Score=158.97 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=73.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+.++|+|+|.+|+|||||+++|++....+... .....++........+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~ 70 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKD---------------------------YAMTSGVEVVVAPVTIPDTT 70 (208)
T ss_dssp EEEEEEEEC-------------------------------------------------------------CEEEECTTSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCC---------------------------CCCccceEEEEEEEEECCcc
Confidence 467899999999999999999998541111100 0011111111122222222
Q ss_pred -CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEEecc
Q 009375 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKM 415 (536)
Q Consensus 343 -~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVINKi 415 (536)
...+.||||||+..|...+...+..+|++|||+|++.+.. + .....++..+.. .++| +|||+||+
T Consensus 71 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 142 (208)
T 2yc2_C 71 VSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES------F-ESCKAWFELLKSARPDRERPLR-AVLVANKT 142 (208)
T ss_dssp EEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH------H-HHHHHHHHHHHHHCSCTTSCCE-EEEEEECC
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH------H-HHHHHHHHHHHHhhcccccCCc-EEEEEECc
Confidence 5689999999999999888889999999999999986421 1 222333333333 2445 99999999
Q ss_pred cccc-cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEccc-CCCccc
Q 009375 416 DAVQ-YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE-NQNLVT 461 (536)
Q Consensus 416 Dl~~-~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~-GenI~e 461 (536)
|+.. ...... +++..+++.+++ +++++||++ |.|+.+
T Consensus 143 Dl~~~~~~v~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~gi~~ 181 (208)
T 2yc2_C 143 DLPPQRHQVRL----DMAQDWATTNTL-----DFFDVSANPPGKDADA 181 (208)
T ss_dssp -------CCCH----HHHHHHHHHTTC-----EEEECCC-------CH
T ss_pred ccchhhccCCH----HHHHHHHHHcCC-----EEEEeccCCCCcCHHH
Confidence 9975 222222 334445555553 789999999 999986
No 130
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=1e-17 Score=170.78 Aligned_cols=150 Identities=27% Similarity=0.262 Sum_probs=102.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+..+|+|+|++|+|||||+|+|++....+.... .++|.......+...+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~------------------------------~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRK------------------------------AQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCC------------------------------SSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCC------------------------------CCcceeeEEEEEEECC
Confidence 4556899999999999999999997654332211 1111111112244567
Q ss_pred eEEEEEeCCCcc---------cchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009375 344 YHVVVLDSPGHK---------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 344 ~~i~LIDTPGh~---------df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
..++||||||+. .+......++..+|++++|+|+.. +.....+++..+...+.| +|+|+||
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---------~~~~~~~i~~~l~~~~~P-~ilvlNK 125 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---------WTPDDEMVLNKLREGKAP-VILAVNK 125 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---------CCHHHHHHHHHHHSSSSC-EEEEEES
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---------CCHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 899999999987 234445667888999999999864 234556666666666777 8999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+... ... +.+.+..+.+.+++ ..++++||++|.|+.+
T Consensus 126 ~D~~~~-~~~---~~~~l~~l~~~~~~----~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 126 VDNVQE-KAD---LLPHLQFLASQMNF----LDIVPISAETGLNVDT 164 (301)
T ss_dssp TTTCCC-HHH---HHHHHHHHHTTSCC----SEEEECCTTTTTTHHH
T ss_pred cccCcc-HHH---HHHHHHHHHHhcCc----CceEEEECCCCCCHHH
Confidence 999741 222 33344444444443 2689999999999975
No 131
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.73 E-value=2.6e-17 Score=159.60 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=98.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++..... ....+.|.......+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDV-------------------------------QSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEE-------------------------------ECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------CCCCCcceeeeeeeeecCC
Confidence 456899999999999999999998532211 0113334444444455577
Q ss_pred eEEEEEeCCCcc------cc---hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEE
Q 009375 344 YHVVVLDSPGHK------DF---VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAV 412 (536)
Q Consensus 344 ~~i~LIDTPGh~------df---~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVI 412 (536)
..+.||||||+. .. ...+...+..+|++|||+|++.... +. . ......+..+... ++| +|||+
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~-~-~~~~~~~~~l~~~~~~~p-iilv~ 149 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LT-I-KEQINLFYSIKSVFSNKS-IVIGF 149 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SC-H-HHHHHHHHHHHTCC-CCC-EEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cc-h-HHHHHHHHHHHHhhcCCc-EEEEE
Confidence 899999999983 31 1122234677899999999986521 11 1 1223444444444 566 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
||+|+..... ........+..+....+ ..++++++||++|+||.+
T Consensus 150 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~ 194 (228)
T 2qu8_A 150 NKIDKCNMDS-LSIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGVEQ 194 (228)
T ss_dssp ECGGGCC--C-CCHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTHHH
T ss_pred eCcccCCchh-hHHHHHHHHHHHHHhcC---CCceEEEEecccCCCHHH
Confidence 9999975321 11222334455555444 124789999999999986
No 132
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.73 E-value=2.1e-17 Score=157.44 Aligned_cols=156 Identities=14% Similarity=0.092 Sum_probs=98.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++.... .. ..+..+.... ....+....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~---------------------------~~~t~~~~~~-~~~~~~~~~ 56 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TD---------------------------YIPTVFDNFS-ANVAVDGQI 56 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--SS---------------------------CCCSSCCCEE-EEEECSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--cc---------------------------CCCccceeEE-EEEEECCEE
Confidence 46799999999999999999999853211 00 0001111111 112233345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||++.|...+..+++.+|++|||+|++... .+......++..+... ++| +|||+||+|+....
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 129 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA------SYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDK 129 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCc
Confidence 68999999999999888888899999999999998642 1111112333444443 566 99999999997431
Q ss_pred hhHHH-----HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFD-----SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~e-----ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. .. ....++..+.+.+++ .+++++||++|+||.+
T Consensus 130 ~~-~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 169 (212)
T 2j0v_A 130 GY-LADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNVKA 169 (212)
T ss_dssp HH-HHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred cc-cccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCHHH
Confidence 11 00 012333444444553 3789999999999986
No 133
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.73 E-value=9.8e-19 Score=165.52 Aligned_cols=153 Identities=19% Similarity=0.189 Sum_probs=92.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++....... .+..+.+.......+...
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 80 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-----------------------------ISTIGVDFKIRTIELDGK 80 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH-----------------------------HHHHCCSEEEEEEEETTE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCc-----------------------------CCcccceEEEEEEEECCE
Confidence 356799999999999999999999843221100 011222222222233333
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~ 419 (536)
...+.||||||+..|...+...++.+|++|||+|++.... + ......+..+... ++| +|||+||+|+..
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES------F-NNVKQWLQEIDRYASENVN-KLLVGNKCDLTT 152 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH------H-HHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC-
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhccCCCC-EEEEEECccCCc
Confidence 4679999999999998888888999999999999987521 1 2223333334333 445 999999999974
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...... ..+..+...+++ +++++||++|+||.+
T Consensus 153 ~~~v~~----~~~~~~~~~~~~-----~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 153 KKVVDY----TTAKEFADSLGI-----PFLETSAKNATNVEQ 185 (199)
T ss_dssp -CCCCS----CC-CHHHHTTTC-----CBCCCCC---HHHHH
T ss_pred cccCCH----HHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 322111 112233334443 679999999999986
No 134
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3e-17 Score=154.65 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=95.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++....... ....+... .....+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----------------------------~~t~~~~~-~~~~~~~~~~ 75 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-----------------------------DPTLESTY-RHQATIDDEV 75 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------------------------CTTCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-----------------------------CCCCCceE-EEEEEECCEE
Confidence 45799999999999999999999853221100 01111111 1112233345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.||||||+.. ...+...++.+|++|||+|++... .+..+..............++| +|||+||+|+......
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v 150 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG---SFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV 150 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccccccc
Confidence 7799999999988 556677788899999999998642 1111111112222212223566 9999999999753222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCC-Cccc
Q 009375 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~Ge-nI~e 461 (536)
..++ +..+.+.+++ +++++||++|+ |+.+
T Consensus 151 ~~~~----~~~~~~~~~~-----~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 151 STEE----GEKLATELAC-----AFYECSACTGEGNITE 180 (196)
T ss_dssp CHHH----HHHHHHHHTS-----EEEECCTTTCTTCHHH
T ss_pred CHHH----HHHHHHHhCC-----eEEEECCCcCCcCHHH
Confidence 2222 2333334443 78999999999 9986
No 135
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.72 E-value=1.2e-17 Score=154.28 Aligned_cols=157 Identities=14% Similarity=0.106 Sum_probs=93.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|++|+|||||+++|++..... ... +..+..... ...+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~--~~~---------------------------~t~~~~~~~-~~~~~~~~ 55 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYV---------------------------PTVFDNFSA-NVVVNGAT 55 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------------CBC-CCC-----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCC---------------------------CeeeeeEEE-EEEECCEE
Confidence 457899999999999999999998543110 000 000000000 00012234
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||+++|...+...++.+|++|+|+|++.... +......++..+... ++| +|||+||+|+....
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS------YENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDK 128 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCc
Confidence 567799999999998888888999999999999986421 111111233344432 555 99999999997532
Q ss_pred hhHHH------HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFD------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~e------ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... ...++...+.+..++ .+++++||++|+|+.+
T Consensus 129 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 129 QFFIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENVKG 170 (182)
T ss_dssp HHHHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCHHH
Confidence 21000 012333444444443 3789999999999986
No 136
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.72 E-value=3.5e-17 Score=157.44 Aligned_cols=159 Identities=16% Similarity=0.074 Sum_probs=99.9
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..++.++|+|+|..|+|||||+++|++...... ..+..+.+.. ....+..
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-----------------------------~~~t~~~~~~-~~~~~~~ 72 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPET-----------------------------YVPTVFENYT-ACLETEE 72 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSEEEEE-EEEEC--
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------cCCeeeeeEE-EEEEECC
Confidence 446679999999999999999999985321100 0011122221 1223344
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~ 419 (536)
....+.||||||++.|...+...++.+|++|||+|++.... +......++..+... ++| +|||+||+|+..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 145 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET------VDSALKKWRTEILDYCPSTR-VLLIGCKTDLRT 145 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH------HHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 56789999999999998888889999999999999986521 212123334444443 455 999999999974
Q ss_pred cchhH--------HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCC-ccc
Q 009375 420 YSKDR--------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (536)
Q Consensus 420 ~~~e~--------~eei~~~L~~~l~~~g~~~~~i~vipvSA~~Gen-I~e 461 (536)
..... .....++...+.+.+++ .+++++||++|.| |.+
T Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred chhhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccHHH
Confidence 21000 00012334444555553 2789999999998 986
No 137
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=170.38 Aligned_cols=151 Identities=18% Similarity=0.149 Sum_probs=99.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++.... ...+ |+......+...+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~------------------------------~~~p----T~~~~~~~~~~~~ 208 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------------------------TTIP----TIGFNVETVEYKN 208 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE------------------------------EEEE----ETTEEEEEEEETT
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC------------------------------Cccc----ccceEEEEEecCc
Confidence 46789999999999999999999843210 0011 2223334456678
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||++.|...+..+++.+|++|||+|++... .+.....+...++... ++| +|||+||+|+...
T Consensus 209 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~ 281 (329)
T 3o47_A 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA 281 (329)
T ss_dssp EEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS------SHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH------HHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcc
Confidence 99999999999999988888999999999999997542 1333333444444433 555 9999999999853
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++... +.........++++++||++|+||.+
T Consensus 282 --~~~~~i~~~----~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 282 --MNAAEITDK----LGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp --CCHHHHHHH----HTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred --cCHHHHHHH----hchhhhhcCCCEEEEEECCCCcCHHH
Confidence 222233322 22222233456899999999999986
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=6.3e-18 Score=180.72 Aligned_cols=144 Identities=24% Similarity=0.301 Sum_probs=95.7
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|++|+|||||+|+|++....+. ....|+|.+.....+.+.+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v------------------------------~~~~g~T~d~~~~~~~~~~~~ 52 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV------------------------------EDTPGVTRDRIYSSAEWLNYD 52 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCCccceEEEEEEECCce
Confidence 46899999999999999999986433221 223677777777777888889
Q ss_pred EEEEeCCCcc--------cchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009375 346 VVVLDSPGHK--------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 346 i~LIDTPGh~--------df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
+.||||||+. .+...+..++..+|++|||+|+..+ +.....++..+++..++| +|||+||+|+
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~--------~~~~d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 9999999985 4666667788899999999999987 334556666777777777 9999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... .+..+. .+++. +++++||++|.|+.+
T Consensus 124 ~~~~~--------~~~~~~-~lg~~----~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 124 TEMRA--------NIYDFY-SLGFG----EPYPISGTHGLGLGD 154 (436)
T ss_dssp -------------CCCSSG-GGSSC----CCEECBTTTTBTHHH
T ss_pred ccchh--------hHHHHH-HcCCC----CeEEEeCcCCCChHH
Confidence 74211 111122 33442 469999999999986
No 139
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=153.07 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=95.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++........ ...+.........+...
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 70 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE-----------------------------PENPEDTYERRIMVDKE 70 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT-----------------------------TTSCTTEEEEEEEETTE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC-----------------------------CCcccceEEEEEEECCE
Confidence 3457999999999999999999997533221110 00111111112223334
Q ss_pred CeEEEEEeCCCcccchh-hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccc
Q 009375 343 NYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~-~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~ 418 (536)
...+.||||||+..+.. .....++.+|++|||+|++... . +.....+...+... .++| +|||+||+|+.
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR---S---FSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH---H---HHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEeechhcc
Confidence 46788999999988764 4455677899999999998641 1 11222222222222 2555 99999999997
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.......++ ...+.+..++ +++++||++|.|+.+
T Consensus 144 ~~~~v~~~~----~~~~a~~~~~-----~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 144 RSREVSLEE----GRHLAGTLSC-----KHIETSAALHHNTRE 177 (195)
T ss_dssp TTCCSCHHH----HHHHHHHTTC-----EEEEEBTTTTBSHHH
T ss_pred ccCCcCHHH----HHHHHHHhCC-----EEEEEcCCCCCCHHH
Confidence 532222222 2334444443 789999999999986
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=4.6e-17 Score=174.15 Aligned_cols=144 Identities=27% Similarity=0.311 Sum_probs=98.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+|+|.+|+|||||+|+|++....+. ...+|+|.+.....+.+.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v------------------------------~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV------------------------------EDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee------------------------------cCCCCCccceeeEEEEECCeEE
Confidence 4799999999999999999996432221 1235777766666677788899
Q ss_pred EEEeCCCccc---------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009375 347 VVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 347 ~LIDTPGh~d---------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
.||||||+.. +...+..+++.+|++|||+|+..+ +.....+...+++..++| +|+|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~--------~~~~d~~i~~~l~~~~~p-~ilv~NK~D~ 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG--------ITKEDESLADFLRKSTVD-TILVANKAEN 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC--------CCHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 9999999664 234456678999999999999876 233445566667777887 9999999998
Q ss_pred cccchhHHHHHHHHH-HHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 418 VQYSKDRFDSIKVQL-GTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L-~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... . ...+ ..+. .+++. +++++||++|.|+.+
T Consensus 123 ~~~---~----~~~~~~~~~-~lg~~----~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 123 LRE---F----EREVKPELY-SLGFG----EPIPVSAEHNINLDT 155 (439)
T ss_dssp HHH---H----HHHTHHHHG-GGSSC----SCEECBTTTTBSHHH
T ss_pred ccc---c----HHHHHHHHH-hcCCC----CEEEEeccCCCCHHH
Confidence 631 0 1112 2222 45542 459999999999986
No 141
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.71 E-value=1.2e-17 Score=155.15 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=90.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+..+|+|+|.+|+|||||+++|++....+.. ...++|.+.....+...+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~ 52 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT------------------------------DIAGTTRDVLREHIHIDGM 52 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC------------------------------SSTTCCCSCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee------------------------------CCCCceeceeeEEEEECCe
Confidence 3578999999999999999999854321111 1123333333333455677
Q ss_pred EEEEEeCCCcccch--------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEe
Q 009375 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVN 413 (536)
Q Consensus 345 ~i~LIDTPGh~df~--------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVIN 413 (536)
.+.||||||+.++. ......++.+|++|+|+|++..... . ....+..+... ++| +|+|+|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~---~-----~~~~~~~~~~~~~~~~p-~ilv~N 123 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV---D-----PAEIWPEFIARLPAKLP-ITVVRN 123 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCC---S-----HHHHCHHHHHHSCTTCC-EEEEEE
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH---H-----HHHHHHHHHHhcccCCC-EEEEEE
Confidence 89999999986532 1123457889999999999875321 1 11222223322 456 999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+|+...... +.+. ...+++++||++|+|+.+
T Consensus 124 K~Dl~~~~~~-----------~~~~-----~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 124 KADITGETLG-----------MSEV-----NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp CHHHHCCCCE-----------EEEE-----TTEEEEECCTTTCTTHHH
T ss_pred CccCCcchhh-----------hhhc-----cCCceEEEeCCCCCCHHH
Confidence 9998642111 0001 134789999999999986
No 142
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.71 E-value=8.6e-17 Score=150.04 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=98.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++...... ..+..+.... ....+....
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~-~~~~~~~~~ 54 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-----------------------------YVPTVFENYT-ASFEIDTQR 54 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSEEEEE-EEEECSSCE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEE-EEEEECCEE
Confidence 4578999999999999999999985321100 0001111111 112233445
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||++.|...+...+..+|++|||+|++... . +.......+..+... ++| +|||+||+|+....
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~ 127 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---T---LDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDV 127 (184)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---H---HHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCH
T ss_pred EEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH---H---HHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcch
Confidence 78999999999999888888899999999999998642 1 111112223333332 444 99999999997421
Q ss_pred hhHHHHH---------HHHHHHHHHHcCCCCCCccEEEEEcc-cCCCccc
Q 009375 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 461 (536)
Q Consensus 422 ~e~~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~-~GenI~e 461 (536)
....++ .+++..+.+.++. ++++++||+ +|+|+.+
T Consensus 128 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~gi~~ 172 (184)
T 1m7b_A 128 -STLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 172 (184)
T ss_dssp -HHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECBTTTBHHHHHH
T ss_pred -hhHhhhhhcccCCCCHHHHHHHHHHcCC----cEEEEeeecCCCcCHHH
Confidence 111110 1234445555442 478999999 6899986
No 143
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.71 E-value=1.5e-17 Score=167.45 Aligned_cols=143 Identities=18% Similarity=0.235 Sum_probs=96.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|++|+|||||+++|++....+ ...+|+|+......+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v-------------------------------~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV-------------------------------GNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC-------------------------------CSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-------------------------------cCCCCCcEEEEEEEEec-CCe
Confidence 5789999999999999999998532111 11245665555555555 678
Q ss_pred EEEEeCCCcccchh------hHhhhcc--cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009375 346 VVVLDSPGHKDFVP------NMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 346 i~LIDTPGh~df~~------~~~~~l~--~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
+.||||||+..|.. ....++. .+|++|+|+|++.. .....+...+...++| +|||+||+|+
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~----------e~~~~~~~~l~~~~~p-~ilv~NK~Dl 119 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL----------ERNLYLTTQLIETGIP-VTIALNMIDV 119 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTCSC-EEEEEECHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch----------HhHHHHHHHHHhcCCC-EEEEEEChhh
Confidence 99999999887742 2223333 69999999999852 2223344455567887 9999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....... ..+..+.+.+++ +++++||++|+|+.+
T Consensus 120 ~~~~~~~-----~~~~~l~~~lg~-----~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 120 LDGQGKK-----INVDKLSYHLGV-----PVVATSALKQTGVDQ 153 (272)
T ss_dssp HHHTTCC-----CCHHHHHHHHTS-----CEEECBTTTTBSHHH
T ss_pred CCcCCcH-----HHHHHHHHHcCC-----CEEEEEccCCCCHHH
Confidence 7421111 112223333443 789999999999986
No 144
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.71 E-value=9.5e-17 Score=151.43 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=95.5
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
...+.++|+|+|.+|+|||||+++|++.... .. .....+.... ....+..
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~---------------------------~~~t~~~~~~-~~~~~~~ 65 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TE---------------------------YIPTAFDNFS-AVVSVDG 65 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-------------------------------------CCSSEEEE-EEEEETT
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCC--CC---------------------------CCCcccceeE-EEEEECC
Confidence 3456799999999999999999999853210 00 0001111111 1112222
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~ 419 (536)
....+.||||||+++|...+...+..+|++|||+|++.... +......++..+... ++| +|||+||+|+..
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 66 RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS------FQNVSEKWVPEIRCHCPKAP-IILVGTQSDLRE 138 (201)
T ss_dssp EEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhh
Confidence 33567899999999998888888899999999999986421 111111233333332 555 999999999975
Q ss_pred cchhHHHH---------HHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~ee---------i~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... .... ..+.+..+.+.+++ ++++++||++|+||.+
T Consensus 139 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 184 (201)
T 2q3h_A 139 DVK-VLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNLKE 184 (201)
T ss_dssp CHH-HHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred chh-hhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCHHH
Confidence 211 0000 11233444444443 3789999999999986
No 145
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=151.05 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=93.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|.+|+|||||+++|++.... .. .....+.... ....+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~---------------------------~~~t~~~~~~-~~~~~~~~ 67 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFI--SE---------------------------YDPNLEDTYS-SEETVDHQ 67 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC--SC---------------------------CCTTCCEEEE-EEEEETTE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCC--cc---------------------------cCCCccceee-EEEEECCE
Confidence 356799999999999999999999853211 00 0011122211 11223344
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEEeccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMD 416 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVINKiD 416 (536)
...+.||||||++.|... ...++.+|++|+|+|++... . +.. ....+..+.. .++| +|||+||+|
T Consensus 68 ~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~---s---~~~-~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 138 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQ---S---FDS-SSSYLELLALHAKETQRSIP-ALLLGNKLD 138 (187)
T ss_dssp EEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHH---H---HHH-HHHHHHHHHHHHHHHCCCCC-EEEEEECGG
T ss_pred EEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHH---H---HHH-HHHHHHHHHHHhhccCCCCC-EEEEEECcc
Confidence 567899999999887653 56788899999999998541 1 211 2222222222 3566 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEc-ccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA-LENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA-~~GenI~e 461 (536)
+........+ ++..+.+.+++ +++++|| ++|+||.+
T Consensus 139 l~~~~~v~~~----~~~~~~~~~~~-----~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 139 MAQYRQVTKA----EGVALAGRFGC-----LFFEVSACLDFEHVQH 175 (187)
T ss_dssp GGGGCSSCHH----HHHHHHHHHTC-----EEEECCSSSCSHHHHH
T ss_pred hhhcCccCHH----HHHHHHHHcCC-----cEEEEeecCccccHHH
Confidence 9743222222 33344444554 7899999 89999986
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=4.3e-17 Score=174.35 Aligned_cols=155 Identities=23% Similarity=0.222 Sum_probs=103.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|++|+|||||+|+|++....+.. ...|+|.+.....+...+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~------------------------------~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS------------------------------PIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------------CCC------CCEEEEETTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccC------------------------------CCCCCcCCceEEEEEECCE
Confidence 4689999999999999999999965332211 1245555444444566788
Q ss_pred EEEEEeCCCcccchh------------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEE
Q 009375 345 HVVVLDSPGHKDFVP------------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (536)
Q Consensus 345 ~i~LIDTPGh~df~~------------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVI 412 (536)
.+.+|||||+..+.. ....++..+|++++|+|+..+. ..+......++...+.+ +|+|+
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~--------~~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI--------TRQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEE
Confidence 899999999744321 1234567799999999998763 23445556667777877 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
||+|+........+++.+.+...+.... ..+++++||++|.|+.++
T Consensus 300 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l 345 (439)
T 1mky_A 300 NKWDLVVHREKRYDEFTKLFREKLYFID----YSPLIFTSADKGWNIDRM 345 (439)
T ss_dssp ECGGGSTTGGGCHHHHHHHHHHHCGGGT----TSCEEECBTTTTBSHHHH
T ss_pred ECccCCCchhhHHHHHHHHHHHHhccCC----CCcEEEEECCCCCCHHHH
Confidence 9999985433335555555555443333 247899999999999873
No 147
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.70 E-value=4.6e-17 Score=152.81 Aligned_cols=151 Identities=17% Similarity=0.109 Sum_probs=94.3
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009375 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
...++.++|+|+|.+|+|||||+++|++....... .+. +.... ....+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-----------------------------~~t-~~~~~-~~~~~~ 63 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-----------------------------SPE-GGRFK-KEIVVD 63 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-----------------------------CTT-CEEEE-EEEEET
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-----------------------------CCC-cceEE-EEEEEC
Confidence 34577899999999999999999999853211000 001 11111 222233
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEeccc
Q 009375 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMD 416 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiD 416 (536)
.....+.||||||++.|. .++.+|++|+|+|++... . +. .....+..+.. .++| +|||+||+|
T Consensus 64 ~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~---s---~~-~~~~~~~~i~~~~~~~~~p-iilv~nK~D 130 (184)
T 3ihw_A 64 GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI---S---FQ-TVYNYFLRLCSFRNASEVP-MVLVGTQDA 130 (184)
T ss_dssp TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH---H---HH-HHHHHHHHHHTTSCGGGSC-EEEEEECTT
T ss_pred CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH---H---HH-HHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 334678889999998876 567799999999998642 1 11 22233333333 2455 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+.......+ ..+++..+.+.++ .++++++||++|+||.+
T Consensus 131 l~~~~~~~v--~~~~~~~~~~~~~----~~~~~e~Sa~~~~gv~~ 169 (184)
T 3ihw_A 131 ISAANPRVI--DDSRARKLSTDLK----RCTYYETCATYGLNVER 169 (184)
T ss_dssp CBTTBCCCS--CHHHHHHHHHHTT----TCEEEEEBTTTTBTHHH
T ss_pred ccccccccc--CHHHHHHHHHHcC----CCeEEEecCCCCCCHHH
Confidence 852111110 1123344454554 24789999999999986
No 148
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=1.3e-16 Score=147.04 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=89.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|.+|+|||||+++|++..... ..+..+... .....+....
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------------------------~~~t~~~~~-~~~~~~~~~~ 53 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV------------------------------LEKTESEQY-KKEMLVDGQT 53 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC------------------------------CSSCSSSEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC------------------------------cCCCcceeE-EEEEEECCEE
Confidence 567999999999999999999998532210 001111111 1112233334
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc------CCCcEEEEEecccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVDQLIVAVNKMDA 417 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~------~vp~vIVVINKiDl 417 (536)
..+.||||||++++ .+++.+|++|||+|++... . +. ....++..+..+ ++| +|||+||+|+
T Consensus 54 ~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~---s---~~-~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 120 (178)
T 2iwr_A 54 HLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDEN---S---FQ-AVSRLHGQLSSLRGEGRGGLA-LALVGTQDRI 120 (178)
T ss_dssp EEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHH---H---HH-HHHHHHHHHHHHHCSSSCCCE-EEEEEECTTC
T ss_pred EEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHH---H---HH-HHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 67899999998872 4567799999999998642 1 11 122222222222 444 9999999998
Q ss_pred ccc--chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 418 VQY--SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~--~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... .....++ +..+.+..+ .++++++||++|+|+.+
T Consensus 121 ~~~~~~~v~~~~----~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 121 SASSPRVVGDAR----ARALXADMK----RCSYYETXATYGLNVDR 158 (178)
T ss_dssp BTTBCCCSCHHH----HHHHHHHHS----SEEEEEEBTTTTBTHHH
T ss_pred cccccCcCCHHH----HHHHHHhhc----CCeEEEEeccccCCHHH
Confidence 421 1122222 233333332 24789999999999986
No 149
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=1.6e-16 Score=162.30 Aligned_cols=159 Identities=20% Similarity=0.271 Sum_probs=103.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-CC
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 343 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 343 (536)
..++|+|+|.+|+|||||+++|++...... ....+.|+......+.. ++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~------------------------------~~~~~~Ti~~~~~~~~~~~~ 51 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD------------------------------TRRLGATIDVEHSHLRFLGN 51 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGG------------------------------GGGCCCCCSEEEEEEEETTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc------------------------------ccCcCCccceEEEEEEeCCc
Confidence 357999999999999999999985422111 11234444444444442 57
Q ss_pred eEEEEEeCCCcccc-----hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEeccc
Q 009375 344 YHVVVLDSPGHKDF-----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMD 416 (536)
Q Consensus 344 ~~i~LIDTPGh~df-----~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiD 416 (536)
..+.||||||+++| ...+...++.+|++|+|+|++.... +..+... ...+..+... ++| +|||+||+|
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l~~~-~~~l~~l~~~~~~~p-iilv~NK~D 126 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDIEIF-AKALKQLRKYSPDAK-IFVLLHKMD 126 (307)
T ss_dssp EEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHHHHH-HHHHHHHHHHCTTCE-EEEEEECGG
T ss_pred eEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHHHHH-HHHHHHHHHhCCCCe-EEEEEeccc
Confidence 89999999999988 4455566788999999999987521 1111111 1112222221 555 999999999
Q ss_pred cccc--chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQY--SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~--~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... ..+.++....++..+.+.+|+. .++++++||++ .|+.+
T Consensus 127 l~~~~~r~~~~~v~~~~~~~~~~~~g~~--~~~~~~tSa~~-~~i~e 170 (307)
T 3r7w_A 127 LVQLDKREELFQIMMKNLSETSSEFGFP--NLIGFPTSIWD-ESLYK 170 (307)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTTCC--SCEEEECCTTS-SHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHcCCC--CeEEEEeeecC-ChHHH
Confidence 9842 1122224456777777777752 35899999999 67654
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.69 E-value=1.8e-16 Score=151.72 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=98.6
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++...... ..+..+.... ....+...
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-----------------------------~~~t~~~~~~-~~~~~~~~ 74 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-----------------------------YVPTVFENYT-ASFEIDTQ 74 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSEEEEE-EEEESSSS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------------cCCccceeEE-EEEEECCE
Confidence 34679999999999999999999985321100 0011111111 11223344
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~ 420 (536)
...+.||||||++.|...+...++.+|++|||+|++... . +......++..+... ++| +|||+||+|+...
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s---~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 147 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---T---LDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 147 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---H---HHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHHCCCCC-EEEEEechhhccc
Confidence 578999999999999888888889999999999998641 1 111112233333332 444 9999999999742
Q ss_pred chhHHHH---------HHHHHHHHHHHcCCCCCCccEEEEEcc-cCCCccc
Q 009375 421 SKDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 461 (536)
Q Consensus 421 ~~e~~ee---------i~~~L~~~l~~~g~~~~~i~vipvSA~-~GenI~e 461 (536)
. ....+ ..+++..+.+.++. ++++++||+ +|+||.+
T Consensus 148 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SAk~~~~gv~~ 193 (205)
T 1gwn_A 148 V-STLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 193 (205)
T ss_dssp H-HHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred h-hhhhhhcccccCCCCHHHHHHHHHHcCC----CEEEEeeeccCCcCHHH
Confidence 1 11111 01234445545442 478999999 6899986
No 151
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=8.7e-17 Score=173.94 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=85.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|.+|+|||||+|+|++....+. ....|+|.+.....+...+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------------s~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIV------------------------------SHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCceEEEEEEEEEECCe
Confidence 468899999999999999999996432211 12245666665566677889
Q ss_pred EEEEEeCCCcccchh--------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009375 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 345 ~i~LIDTPGh~df~~--------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.+.||||||+.++.. .+...+..+|++|||+|++.+... .+..+...++..+...|+|+|+||+|
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-------~~~~~~~~~l~~l~~~piIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD-------DELTEIRELKAAHPAAKFLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSG-------GGHHHHHHHHHHCTTSEEEEEEECTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch-------hhhHHHHHHHHhcCCCCEEEEEECcC
Confidence 999999999876542 234567889999999999976321 11223333444443345999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+........ +.+... ++ .+++++||++|+||.+
T Consensus 355 l~~~~~~~~----~~l~~~----~~----~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 355 RAANADALI----RAIADG----TG----TEVIGISALNGDGIDT 387 (476)
T ss_dssp SCTTTHHHH----HHHHHH----HT----SCEEECBTTTTBSHHH
T ss_pred CCCccchhH----HHHHhc----CC----CceEEEEECCCCCHHH
Confidence 985422211 122221 22 3689999999999986
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.69 E-value=3.6e-17 Score=161.89 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=98.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++....+.... ..++|.......+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~ 70 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLG-----------------------------SQTLTKTCSKSQGSWGN 70 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT-----------------------------SCCCCCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCC-----------------------------CCceeeeeEEEEEEeCC
Confidence 4578999999999999999999996543221110 01133333333455678
Q ss_pred eEEEEEeCCCcccch-----------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-----CCCc
Q 009375 344 YHVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQ 407 (536)
Q Consensus 344 ~~i~LIDTPGh~df~-----------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-----~vp~ 407 (536)
..++||||||+.++. ..+...++.+|++|||+|+.. +..+....+..+... ..|
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~---------~~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR---------YTSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC---------CCHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC---------CCHHHHHHHHHHHHHhCchhhcc-
Confidence 899999999987652 223346788999999999974 233445555555554 455
Q ss_pred EEEEEe-cccccccchhHHHHHH----HHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 408 LIVAVN-KMDAVQYSKDRFDSIK----VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 408 vIVVIN-KiDl~~~~~e~~eei~----~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+|+| |+|+.... ..+.+. ..+..++..++.....+..+++||++|.|+.+
T Consensus 141 ~i~vv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 197 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGS--LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKE 197 (260)
T ss_dssp EEEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHH
T ss_pred EEEEEEcccccCCcc--HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHH
Confidence 667776 99998432 111111 23444555554311001117899999999986
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.68 E-value=1.7e-16 Score=159.06 Aligned_cols=157 Identities=17% Similarity=0.246 Sum_probs=89.0
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC-
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 343 (536)
..++|+|+|.+|+|||||+|+|++......... .......++++++.....+...+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~-----------------------~~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP-----------------------GPSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCC-----------------------CcccccCCceEEEEEEEEEecCCe
Confidence 468999999999999999999985433221110 00001122333333333344333
Q ss_pred -eEEEEEeCCCcccch-------hhH-------hhhc-------------ccCCeEEEEeecCC-CcccccccchhhHHH
Q 009375 344 -YHVVVLDSPGHKDFV-------PNM-------ISGA-------------TQSDAAILVIDASV-GSFEVGMNTAKGLTR 394 (536)
Q Consensus 344 -~~i~LIDTPGh~df~-------~~~-------~~~l-------------~~aD~~ILVVDas~-g~~e~~~~~~~~qt~ 394 (536)
..++||||||+.++. ... ..++ ..+|++|++|+... + +.....
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~--------~~~~d~ 135 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--------LKPLDI 135 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS--------CCHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC--------CCHHHH
Confidence 589999999974321 111 1111 22789999997664 3 345666
Q ss_pred HHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 395 e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+.+..+.. ++| +|+|+||+|+. ....+...++.+...+...++ +++++||++++|+.+
T Consensus 136 ~~l~~l~~-~~p-vi~V~nK~D~~--~~~e~~~~~~~i~~~l~~~~i-----~v~~~sa~~~~~~~~ 193 (274)
T 3t5d_A 136 EFMKRLHE-KVN-IIPLIAKADTL--TPEECQQFKKQIMKEIQEHKI-----KIYEFPETDDEEENK 193 (274)
T ss_dssp HHHHHHTT-TSC-EEEEESSGGGS--CHHHHHHHHHHHHHHHHHTTC-----CCCCC----------
T ss_pred HHHHHHhc-cCC-EEEEEeccCCC--CHHHHHHHHHHHHHHHHHcCC-----eEEcCCCCCChhHHH
Confidence 66666665 666 99999999997 445556666777777776665 568999999999986
No 154
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.9e-16 Score=171.51 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=103.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+|.+|+|||||+++|++..... ..+ |+......+...
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~------------------------------~~~----T~~~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT------------------------------TIP----TVGFNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC------------------------------CCC----CSSEEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC------------------------------cCC----ccceeEEEEEeC
Confidence 3567999999999999999999998532110 001 222233346668
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~ 419 (536)
+..+.||||||++.|...+..+++.+|++|+|+|++... .+.....+...++.. .++| +|||+||+|+..
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~------s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD------RIDEARQELHRIINDREMRDAI-ILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG------GHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh------HHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCc
Confidence 889999999999999988888999999999999998652 122333333333332 2555 999999999974
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ...+++. ..+.........++++++||++|+||.+
T Consensus 438 ~--~~~~~~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 438 A--MKPHEIQ----EKLGLTRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp C--CCHHHHH----HHTTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred C--CCHHHHH----HHhchhhhhcCCeEEEEEECCCCCCHHH
Confidence 3 1222222 2221111223345799999999999986
No 155
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.68 E-value=1.4e-16 Score=157.67 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=98.1
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
...+.++|+|+|.+|+|||||+|+|++....+.... ..++|.......+..
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~-----------------------------~~~~T~~~~~~~~~~ 67 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLG-----------------------------ATSVTRACTTGSRRW 67 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEE
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCC-----------------------------CCCccccEEEEEEEE
Confidence 345689999999999999999999996544332210 122333333444566
Q ss_pred CCeEEEEEeCCCc--------ccchhhHhhhc----ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc------
Q 009375 342 KNYHVVVLDSPGH--------KDFVPNMISGA----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------ 403 (536)
Q Consensus 342 ~~~~i~LIDTPGh--------~df~~~~~~~l----~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~------ 403 (536)
.+..++||||||. ..+...+...+ ..+|++|||+|+.. +.......+..+...
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~---------~~~~~~~~~~~l~~~~~~~~~ 138 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR---------FTAQDQQAVRQVRDMFGEDVL 138 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB---------CCHHHHHHHHHHHHHHCGGGG
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC---------CCHHHHHHHHHHHHHhChhhh
Confidence 7889999999996 55555555444 88999999999973 223444545555443
Q ss_pred CCCcEEEEEecccccccchhHHHHHH-----HHHHHHHHHcCCCCCCccEEEEEccc-----CCCccc
Q 009375 404 GVDQLIVAVNKMDAVQYSKDRFDSIK-----VQLGTFLRSCGFKDASLTWIPLSALE-----NQNLVT 461 (536)
Q Consensus 404 ~vp~vIVVINKiDl~~~~~e~~eei~-----~~L~~~l~~~g~~~~~i~vipvSA~~-----GenI~e 461 (536)
+.| +|||+||+|+.... +++.. ..+..+++.++. .++++++.. +.|+.+
T Consensus 139 ~~~-iilv~nK~Dl~~~~---~~~~l~~~~~~~l~~l~~~~g~-----~~~~~~~~~~~~~~~~~v~~ 197 (247)
T 3lxw_A 139 KWM-VIVFTRKEDLAGGS---LHDYVSNTENRALRELVAECGG-----RVCAFDNRATGREQEAQVEQ 197 (247)
T ss_dssp GGE-EEEEECGGGGTTCC---HHHHHHHCCCHHHHHHHHHTTT-----CEEECCTTCCHHHHHHHHHH
T ss_pred ccE-EEEEEchHhcCCCC---HHHHHhhcccHHHHHHHHHcCC-----eEEEEeCCCCccccHHHHHH
Confidence 445 99999999997432 22222 357777877775 456665543 567764
No 156
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=7.1e-17 Score=173.50 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=100.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.|..++|+|+|++|+|||||+|+|++....+. ...+|+|.+.....+.+.
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v------------------------------~~~~g~t~~~~~~~~~~~ 69 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIV------------------------------EDTPGVTRDRIYSSAEWL 69 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTTC
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCcceeEEEEEEEEC
Confidence 45678999999999999999999996433211 123677777777777888
Q ss_pred CeEEEEEeCCC--------cccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009375 343 NYHVVVLDSPG--------HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 343 ~~~i~LIDTPG--------h~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
+..+.|||||| ++.+...+..++..+|++|||+|+..+ +.....++..+++..++| +|||+||
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~--------~~~~d~~l~~~l~~~~~p-vilV~NK 140 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVNK 140 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC--------SCHHHHHHHHHHTTCCSC-EEEEEEC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC--------CChHHHHHHHHHHHcCCC-EEEEEEC
Confidence 88999999999 666777777888999999999999876 445677777888877887 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+.... ..+..+ ..+++. .++++||++|.|+.+
T Consensus 141 ~D~~~~~--------~~~~e~-~~lg~~----~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 141 LDNTEMR--------ANIYDF-YSLGFG----EPYPISGTHGLGLGD 174 (456)
T ss_dssp C-----------------CCS-GGGSSS----SEEECCTTTCTTHHH
T ss_pred ccchhhh--------hhHHHH-HHcCCC----ceEEeecccccchHH
Confidence 9987321 111111 223442 458999999999986
No 157
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.5e-16 Score=152.50 Aligned_cols=153 Identities=17% Similarity=0.108 Sum_probs=92.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++....+.... ...|.+.......+....
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~----------------------------~~~g~d~~~~~i~~~~~~ 86 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC----------------------------EVLGEDTYERTLMVDGES 86 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------------------------------CCTTEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC----------------------------CccceeeEEEEEEECCee
Confidence 4568999999999999999999985332221110 001111111122233334
Q ss_pred eEEEEEeCCCccc-chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEeccccc
Q 009375 344 YHVVVLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 344 ~~i~LIDTPGh~d-f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~ 418 (536)
..+.+|||+|... +.......++.+|++|+|+|.+... . +.. .......+.. .++| +|||+||+|+.
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~---s---f~~-~~~~~~~l~~~~~~~~~p-iilVgNK~DL~ 158 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---S---FEK-ASELRIQLRRARQTEDIP-IILVGNKSDLV 158 (211)
T ss_dssp EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH---H---HHH-HHHHHHHHHTSGGGTTSC-EEEEEECTTCG
T ss_pred eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH---H---HHH-HHHHHHHHHHHhCCCCCc-EEEEEEChHHh
Confidence 5678999999876 3333445567899999999998531 1 211 1222222322 2455 99999999997
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.......++ ...+...+++ +|+++||++|+||.+
T Consensus 159 ~~r~v~~~e----~~~~a~~~~~-----~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 159 RCREVSVSE----GRACAVVFDC-----KFIETSAAVQHNVKE 192 (211)
T ss_dssp GGCCSCHHH----HHHHHHHHTC-----EEEECBTTTTBSHHH
T ss_pred cCceEeHHH----HHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 432222222 2223333443 789999999999986
No 158
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.65 E-value=1.6e-16 Score=147.54 Aligned_cols=150 Identities=24% Similarity=0.311 Sum_probs=88.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++..... ...+++|.......+ . .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~--~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR-------------------------------GKRPGVTRKIIEIEW--K--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS-------------------------------SSSTTCTTSCEEEEE--T--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc-------------------------------CCCCCccceeEEEec--C--CE
Confidence 689999999999999999998542111 011233322222222 2 58
Q ss_pred EEEeCCC-----------cccchhhHhhh----cccCCeEEEEeecCCCcccccccch-----hhHHHHHHHHHHHcCCC
Q 009375 347 VVLDSPG-----------HKDFVPNMISG----ATQSDAAILVIDASVGSFEVGMNTA-----KGLTREHAQLIRSFGVD 406 (536)
Q Consensus 347 ~LIDTPG-----------h~df~~~~~~~----l~~aD~~ILVVDas~g~~e~~~~~~-----~~qt~e~l~ll~~~~vp 406 (536)
.|||||| ++.|...+... +..++++++|+|+.... .-...+ ..+..+.+..+...++|
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAP--EIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHH--HHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhh--hHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 9999999 34444443333 44466777777765310 000000 01223344555566777
Q ss_pred cEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCC--CccEEEEEcccCCCccc
Q 009375 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVT 461 (536)
Q Consensus 407 ~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~--~i~vipvSA~~GenI~e 461 (536)
+|||+||+|+.... .+.+..+.+.+++... .++++++||++|+|+.+
T Consensus 125 -iilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 125 -TIVAVNKLDKIKNV-------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp -EEEEEECGGGCSCH-------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHH
T ss_pred -eEEEeehHhccCcH-------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHH
Confidence 99999999998532 1223334444454110 13589999999999986
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.65 E-value=2.3e-16 Score=170.86 Aligned_cols=143 Identities=25% Similarity=0.274 Sum_probs=97.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||+|+|++....+.. ..+++|.+.....+...+..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs------------------------------~~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVT------------------------------DIPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCC------------------------------CSSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccC------------------------------CCCCeeeeeEEEEEecCCeE
Confidence 489999999999999999999965322211 12344444444445567889
Q ss_pred EEEEeCCCcc-cch--------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009375 346 VVVLDSPGHK-DFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 346 i~LIDTPGh~-df~--------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
+.||||||+. .+. ..+...+..+|++|+|+|++.+.. .+..+.+..+ .+.| +|||+||+|
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s--------~~~~~il~~l--~~~p-iivV~NK~D 361 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD--------EEDRKILERI--KNKR-YLVVINKVD 361 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC--------HHHHHHHHHH--TTSS-EEEEEEECS
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC--------HHHHHHHHHh--cCCC-EEEEEECcc
Confidence 9999999987 543 334567888999999999987621 1223333333 2455 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... ...++ +..++ +. .++++++||++|+||.+
T Consensus 362 L~~~--~~~~~----~~~~~---~~---~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 362 VVEK--INEEE----IKNKL---GT---DRHMVKISALKGEGLEK 394 (482)
T ss_dssp SCCC--CCHHH----HHHHH---TC---STTEEEEEGGGTCCHHH
T ss_pred cccc--cCHHH----HHHHh---cC---CCcEEEEECCCCCCHHH
Confidence 9742 12222 22222 21 24789999999999986
No 160
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=1.2e-17 Score=158.45 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=96.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++..... ... ...+... .....+....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~---------------------------~t~~~~~-~~~~~~~~~~ 77 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYI---------------------------PTVFDNY-SANVMVDGKP 77 (204)
Confidence 567999999999999999999998432110 000 0000000 0011122344
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||+.+|...+...++.+|++|||+|++.+.. +.......+..+... ++| +|||+||+|+....
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s------~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~ 150 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS------FENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 150 (204)
Confidence 567799999999998888888999999999999986521 111111223333332 555 99999999997431
Q ss_pred hhHHH---------HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFD---------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~e---------ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ..+ ....++..+.+.+++ ++++++||++|+|+.+
T Consensus 151 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi~~ 194 (204)
T 3th5_A 151 D-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
Confidence 1 111 011222333333332 3689999999999987
No 161
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.64 E-value=7.8e-16 Score=145.55 Aligned_cols=153 Identities=18% Similarity=0.135 Sum_probs=88.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++....+.... ...|.+.......+....
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 55 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGEDTYERTLMVDGES 55 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCTTEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccceeEEEEEEEECCeE
Confidence 3468999999999999999999985432221110 001111111122233334
Q ss_pred eEEEEEeCCCccc-chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEeccccc
Q 009375 344 YHVVVLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 344 ~~i~LIDTPGh~d-f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~ 418 (536)
..+.+|||+|... +.......++.+|++|+|+|.+... . +.. .......+.. .++| +|+|.||+|+.
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s---~~~-~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~ 127 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---S---FEK-ASELRIQLRRARQTEDIP-IILVGNKSDLV 127 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH---H---HHH-HHHHHHHHHHHTTTSCCC-EEEEEECTTCG
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH---H---HHH-HHHHHHHHHHhhCCCCCe-EEEEEechhhh
Confidence 5678999999765 2223344567799999999998531 1 211 1222222322 2555 99999999987
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.......+ ....+....+ ++|+++||++|+||.+
T Consensus 128 ~~r~v~~~----~~~~~a~~~~-----~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 128 RXREVSVS----EGRAXAVVFD-----XKFIETSAAVQHNVKE 161 (192)
T ss_dssp GGCCSCHH----HHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred ccccccHH----HHHHHHHHhC-----CceEEeccccCCCHHH
Confidence 42222222 1222223333 3789999999999986
No 162
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.63 E-value=2.6e-15 Score=152.20 Aligned_cols=156 Identities=16% Similarity=0.099 Sum_probs=98.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++....... ....+... .....+....
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~-----------------------------~~t~~~~~-~~~~~~~~~~ 202 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----------------------------IPTVFDNY-SANVMVDGKP 202 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC-----------------------------CCCSEEEE-EEEEEETTEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCccc-----------------------------CCccccee-EEEEEECCEE
Confidence 34589999999999999999999843211000 00011111 1111222234
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||+..|...+..++..+|++|||+|++.... +......++..+... ++| +|||+||+|+....
T Consensus 203 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 275 (332)
T 2wkq_A 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS------FHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 275 (332)
T ss_dssp EEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCH
T ss_pred EEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH------HHHHHHHHHHHHHhhCCCCc-EEEEEEchhccccc
Confidence 556699999999998888888999999999999986421 111111233334433 555 99999999997431
Q ss_pred hhHHHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+.+ ......+.+..++ .+++++||++|+||.+
T Consensus 276 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 319 (332)
T 2wkq_A 276 -DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 319 (332)
T ss_dssp -HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -chhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHH
Confidence 111111 1234445555543 3789999999999986
No 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.62 E-value=1e-15 Score=143.05 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=89.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe---ecC
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---DSK 342 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~---~~~ 342 (536)
.++|+|+|.+|+|||||+++|++........ ..+..|+........+ ...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~---------------------------~~~t~g~~~~~~~~~~~~~~~~ 54 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---------------------------QSATVGIDVKDWPIQIRDKRKR 54 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--------------------------------------CSEEEEEEEC--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCC---------------------------cceeccEEeEEeeeccccCCCC
Confidence 4789999999999999999998532111000 0011122111111111 124
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-CCCcEEEEEecccccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~vp~vIVVINKiDl~~~~ 421 (536)
...+.||||||++.|.......++.++++++|+|.+.+. .. +.....++..+.... +.| +|||+||+|+...
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~s---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 127 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ--AE---VDAMKPWLFNIKARASSSP-VILVGTHLDVSDE- 127 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH--HH---HHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCH-
T ss_pred ceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch--hH---HHHHHHHHHHHHhhCCCCc-EEEEEECCCcccc-
Confidence 567999999999888776667778899999999998651 01 111122222222222 454 9999999999742
Q ss_pred hhHHHH-HHHHHHHHHHHcCCCCCCccEEEEEcccCC-Cccc
Q 009375 422 KDRFDS-IKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (536)
Q Consensus 422 ~e~~ee-i~~~L~~~l~~~g~~~~~i~vipvSA~~Ge-nI~e 461 (536)
..... +......+.+.+++. ...+++++||++|. |+.+
T Consensus 128 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~~~~~ 167 (184)
T 2zej_A 128 -KQRKACMSKITKELLNKRGFP-AIRDYHFVNATEESDALAK 167 (184)
T ss_dssp -HHHHHHHHHHHHHTTTCTTSC-EEEEEEECCTTSCCHHHHH
T ss_pred -hhhHHHHHHHHHHHHHhcCCc-chhheEEEecccCchhHHH
Confidence 22211 122223333333431 01138999999996 8875
No 164
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.60 E-value=6.2e-16 Score=166.69 Aligned_cols=143 Identities=25% Similarity=0.236 Sum_probs=87.1
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|++|+|||||+|+|++....+... ..|+|.+.....+...+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~------------------------------~~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD------------------------------LPGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSC------------------------------CTTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccC------------------------------CCCeeEEEEEEEEEECCE
Confidence 45789999999999999999999654332211 123333222223445778
Q ss_pred EEEEEeCCCcccchh--------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009375 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 345 ~i~LIDTPGh~df~~--------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.+.||||||+.++.. .....+..+|++|+|+|++.+ +..+..+++..+.. . |+|+|+||+|
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~--------~~~~~~~i~~~l~~--~-piivV~NK~D 341 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG--------WTTGDQEIYEQVKH--R-PLILVMNKID 341 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTC--------SCHHHHHHHHHHTT--S-CEEEEEECTT
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC--------CCHHHHHHHHhccC--C-cEEEEEECCC
Confidence 899999999766432 234467889999999999876 22333444443322 3 5999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+....... .++.+. ...+++++||++|+|+.+
T Consensus 342 l~~~~~~~----------~~~~~~---~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 342 LVEKQLIT----------SLEYPE---NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp SSCGGGST----------TCCCCT---TCCCEEEEBTTTTBSHHH
T ss_pred CCcchhhH----------HHHHhc---cCCcEEEEECCCCCCHHH
Confidence 97532111 111111 234789999999999986
No 165
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=7e-16 Score=147.50 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=87.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+|++|+|||||+++|++....... ....+.++ ....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~----------------------------~~~~~~~~-------~~~~ 53 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------------------------VSQEPLSA-------ADYD 53 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----------------------------CCSSCEEE-------TTGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCee----------------------------eecCceEE-------EEee
Confidence 345789999999999999999999854321100 00001111 1114
Q ss_pred CeEEEEEeCCCcccchhhHhhhccc----CCeEEEEeecC-CCcccccccchhhHHHHHHHHHHH------cCCCcEEEE
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVA 411 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~----aD~~ILVVDas-~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVV 411 (536)
...+.||||||+..+...+..+++. +|++|||+|++ .. .. +.....++..++.. .++| +|||
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ilv 126 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---KK---LTTTAEFLVDILSITESSCENGID-ILIA 126 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT---TC---CHHHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCCh---HH---HHHHHHHHHHHHhcccccccCCCC-EEEE
Confidence 5679999999999998777777766 89999999998 22 11 22223333333332 3566 9999
Q ss_pred Eecccccccch--hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCc
Q 009375 412 VNKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (536)
Q Consensus 412 INKiDl~~~~~--e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI 459 (536)
+||+|+..... ...+.+.+++..+....+ .+++++||++|.+-
T Consensus 127 ~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 127 CNKSELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEED 171 (218)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC---------
T ss_pred EEchHhcccCCHHHHHHHHHHHHHHHHHHHh-----cccccccccccccc
Confidence 99999985432 222233444444444433 26799999998864
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=146.10 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=89.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|++|+|||||+++|++....... ....++|.......+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 76 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG-----------------------------TAAKSITKKCEKRSSSWK 76 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccC-----------------------------CCCCceeeeEEEEEEEeC
Confidence 356799999999999999999999964331111 111234444444456667
Q ss_pred CeEEEEEeCCCcc-----------cchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH-HcCCCcEEE
Q 009375 343 NYHVVVLDSPGHK-----------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIV 410 (536)
Q Consensus 343 ~~~i~LIDTPGh~-----------df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~-~~~vp~vIV 410 (536)
+..+.||||||.. .+...+...+..+|++|+|+|+..... . ......++...+. ....| +||
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~----~~~~l~~~~~~~~~~~~~~-~ii 150 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-E----EHKATEKILKMFGERARSF-MIL 150 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-H----HHHHHHHHHHHHHHHHGGG-EEE
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-H----HHHHHHHHHHHhhhhccce-EEE
Confidence 8899999999943 344444555677899999999874310 0 0111222222221 12334 999
Q ss_pred EEecccccccch--hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccC
Q 009375 411 AVNKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (536)
Q Consensus 411 VINKiDl~~~~~--e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~G 456 (536)
|+||+|+..... +.+....+.+..+++.++. .++++++..+
T Consensus 151 v~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~~~ 193 (239)
T 3lxx_A 151 IFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-----RYCALNNKAT 193 (239)
T ss_dssp EEECGGGC------------CHHHHHHHHHHSS-----SEEECCTTCC
T ss_pred EEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-----EEEEEECCCC
Confidence 999999974311 1111222457777777775 4677766643
No 167
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.58 E-value=1.6e-14 Score=150.41 Aligned_cols=151 Identities=23% Similarity=0.309 Sum_probs=93.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+++|++....+. ...+.|.......+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA-------------------------------SYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE-------------------------------CCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC-------------------------------CCCCeeeceeEEEEEecC
Confidence 3567999999999999999999985432110 011222233333444567
Q ss_pred eEEEEEeCCCcccchh--------hH-hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-CCCcEEEEEe
Q 009375 344 YHVVVLDSPGHKDFVP--------NM-ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVN 413 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~--------~~-~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~vp~vIVVIN 413 (536)
..+.+|||||+..+.. .. ......+|++|||+|++.+. ++ .+..+......+.... +.| +|+|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~-~~~~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GF-PLEEQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SS-CHHHHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cC-CHHHHHHHHHHHHHhcCCCC-EEEEEE
Confidence 8899999999755321 11 22334599999999987541 00 1222332222333333 566 999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+|+... ..+++ +..++...+ ++++++||++|+|+.+
T Consensus 289 K~Dl~~~--~~~~~----~~~~~~~~~-----~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 289 KIDVADE--ENIKR----LEKFVKEKG-----LNPIKISALKGTGIDL 325 (357)
T ss_dssp CTTTCCH--HHHHH----HHHHHHHTT-----CCCEECBTTTTBTHHH
T ss_pred CcccCCh--HHHHH----HHHHHHhcC-----CCeEEEeCCCCcCHHH
Confidence 9999742 22222 333333333 3679999999999986
No 168
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.58 E-value=2.1e-15 Score=165.09 Aligned_cols=150 Identities=14% Similarity=0.154 Sum_probs=94.5
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEE------
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV------ 336 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~------ 336 (536)
..+.++|+|+|.+|+|||||+++|++....... .+..|+++....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~-----------------------------~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKE-----------------------------SQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------------------CCccceEEEEeccccccc
Confidence 456799999999999999999999954311000 001111111000
Q ss_pred E--EeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC--CCcEEEEE
Q 009375 337 A--YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAV 412 (536)
Q Consensus 337 ~--~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~--vp~vIVVI 412 (536)
. ........+.||||||++.|.......++.+|++|+|+|++.. ......+..+...+ .| +|||+
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~~~~p-vilV~ 157 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYGGKSP-VIVVM 157 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHSSSCC-EEEEE
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhCCCCC-EEEEE
Confidence 0 0112367899999999999888777788899999999999753 23344455555544 56 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
||+|+........ +.+..++...++ +++++||++|.||.+
T Consensus 158 NK~Dl~~~~~v~~----~~~~~~~~~~~~-----~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 158 NKIDENPSYNIEQ----KKINERFPAIEN-----RFHRISCKNGDGVES 197 (535)
T ss_dssp CCTTTCTTCCCCH----HHHHHHCGGGTT-----CEEECCC-----CTT
T ss_pred ECCCcccccccCH----HHHHHHHHhcCC-----ceEEEecCcccCHHH
Confidence 9999975332222 334445555554 689999999999986
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.58 E-value=1.7e-14 Score=136.34 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=96.2
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|+.|+|||||+++|++....... .+..|+........+.....
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-----------------------------~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-----------------------------KSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------------CCCSCEEEEEEEEETTEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCC-----------------------------CCccceeEEEEEEEECCEEE
Confidence 3689999999999999999999854321110 11122323333333333345
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 009375 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~ 421 (536)
.+.||||||++.+.......+..++++|+|+|+..... + ......+..+.. .+. ++++|+||+|+....
T Consensus 55 ~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~-~i~~v~nK~Dl~~~~ 126 (199)
T 2f9l_A 55 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT------Y-ENVERWLKELRDHADSNI-VIMLVGNKSDLRHLR 126 (199)
T ss_dssp EEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTC-EEEEEEECTTCGGGC
T ss_pred EEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH------H-HHHHHHHHHHHHhcCCCC-eEEEEEECccccccc
Confidence 68899999999887666667788999999999885411 1 111222222222 234 499999999997532
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....+ ....+....+ +.++.+||+++.|+.+
T Consensus 127 ~~~~~----~a~~l~~~~~-----~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 127 AVPTD----EARAFAEKNN-----LSFIETSALDSTNVEE 157 (199)
T ss_dssp CSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred CcCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 22222 2334444444 3789999999999986
No 170
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.57 E-value=2.2e-15 Score=156.41 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=91.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC-e
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 344 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~ 344 (536)
..+|+|+|.+|||||||+++|++....+... ...|.......+...+ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~-------------------------------~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADY-------------------------------HFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESST-------------------------------TSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccC-------------------------------CccccCceEEEEEeCCCc
Confidence 3469999999999999999998643322111 1111111112233343 7
Q ss_pred EEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-----CCCcEEEEE
Q 009375 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAV 412 (536)
Q Consensus 345 ~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-----~vp~vIVVI 412 (536)
.++||||||+.. +....+..+..+|++|+|||++..... + .......++..+..+ .+| +|||+
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~---~-~~~~~~~~~~eL~~~~~~l~~~p-~ilV~ 281 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR---D-PYDDYLTINQELSEYNLRLTERP-QIIVA 281 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCC---C-HHHHHHHHHHHHHHSCSSTTTSC-BCBEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccccc---C-hHHHHHHHHHHHHHhhhhhcCCC-EEEEE
Confidence 899999999533 334455556679999999999752100 0 112333344444442 455 89999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
||+|+... .+ .+..+.+.+.. .++++++||++++|+.+
T Consensus 282 NK~Dl~~~-~e-------~~~~l~~~l~~---~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 282 NKMDMPEA-AE-------NLEAFKEKLTD---DYPVFPISAVTREGLRE 319 (342)
T ss_dssp ECTTSTTH-HH-------HHHHHHHHCCS---CCCBCCCSSCCSSTTHH
T ss_pred ECccCCCC-HH-------HHHHHHHHhhc---CCCEEEEECCCCcCHHH
Confidence 99999742 11 12223333331 14679999999999986
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.56 E-value=2.8e-14 Score=135.37 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=92.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+..+|+|+|++|+|||||+++|++..... ...+..|.+.......+. +
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~-----------------------------~~~~~~G~~~~~~~~~~~--~ 72 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLA-----------------------------RTSKTPGRTQLINLFEVA--D 72 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEEEEEE--T
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccc-----------------------------cccCCCccceeeEEEEec--C
Confidence 456789999999999999999998543100 001123333332222222 2
Q ss_pred eEEEEEeCCCccc----------chhh---HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEE
Q 009375 344 YHVVVLDSPGHKD----------FVPN---MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (536)
Q Consensus 344 ~~i~LIDTPGh~d----------f~~~---~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIV 410 (536)
.+.||||||+.. +... .......++++++|+|+..+. .....+...++...++| +++
T Consensus 73 -~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~~~ 142 (210)
T 1pui_A 73 -GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--------KDLDQQMIEWAVDSNIA-VLV 142 (210)
T ss_dssp -TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEE
T ss_pred -CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--------chhHHHHHHHHHHcCCC-eEE
Confidence 578999999742 2211 222235689999999998652 12233445566677887 889
Q ss_pred EEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 411 VINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+||+|+.. ....+.....+..++...+. .+.++|+||+++.|+.+
T Consensus 143 v~nK~D~~s--~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 143 LLTKADKLA--SGARKAQLNMVREAVLAFNG---DVQVETFSSLKKQGVDK 188 (210)
T ss_dssp EEECGGGSC--HHHHHHHHHHHHHHHGGGCS---CEEEEECBTTTTBSHHH
T ss_pred EEecccCCC--chhHHHHHHHHHHHHHhcCC---CCceEEEeecCCCCHHH
Confidence 999999874 22222223445555544432 35789999999999985
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.56 E-value=5.3e-15 Score=148.53 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=64.8
Q ss_pred CeEEEEEeCCCcc-------------cchhhHhhhcccCCeEE-EEeecCCCcccccccchhhHH-HHHHHHHHHcCCCc
Q 009375 343 NYHVVVLDSPGHK-------------DFVPNMISGATQSDAAI-LVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (536)
Q Consensus 343 ~~~i~LIDTPGh~-------------df~~~~~~~l~~aD~~I-LVVDas~g~~e~~~~~~~~qt-~e~l~ll~~~~vp~ 407 (536)
...++||||||+. .+...+..++..++.+| +|+|++.+. ..+. ..++..+...+.|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~~~~~~~~~~~~- 194 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKIAKEVDPQGQR- 194 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG--------GGCHHHHHHHHHCTTCSS-
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch--------hhhHHHHHHHHhCCCCCe-
Confidence 4689999999964 24445566777888766 699998652 2222 2344445445666
Q ss_pred EEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 408 vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+|+||+|+........+ .+...+ ..+.....+++++||++|.|+.+
T Consensus 195 ~i~V~NK~Dl~~~~~~~~~----~~~~~~--~~~~~~~~~v~~~SA~~~~gi~~ 242 (299)
T 2aka_B 195 TIGVITKLDLMDEGTDARD----VLENKL--LPLRRGYIGVVNRSQKDIDGKKD 242 (299)
T ss_dssp EEEEEECGGGSCTTCCCHH----HHTTCS--SCCTTCEEECCCCCCBCTTSCBC
T ss_pred EEEEEEccccCCCCchHHH----HHhCCc--CcCCCCcEEEECCChhhcccccc
Confidence 9999999999853221111 111111 11111123678999999999986
No 173
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.55 E-value=3.8e-14 Score=141.47 Aligned_cols=183 Identities=18% Similarity=0.183 Sum_probs=101.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+|+|++....... ...+.|.......+...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~ 86 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS------------------------------PFQSEGPRPVMVSRSRAG 86 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC------------------------------SSSCCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc------------------------------CCCCcceeeEEEEEeeCC
Confidence 45799999999999999999999964322111 112233333334456678
Q ss_pred eEEEEEeCCCcccchh---hH----hhh--cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCC---CcEEE
Q 009375 344 YHVVVLDSPGHKDFVP---NM----ISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV---DQLIV 410 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~---~~----~~~--l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~v---p~vIV 410 (536)
..++||||||+.++.. .. ..+ ...+|++|||+|++... +.....+.+..+.. ++. .++|+
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~iiv 159 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-------VDNLDKLVAKAITDSFGKGIWNKAIV 159 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-------CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-------CCHHHHHHHHHHHHHhCcccccCEEE
Confidence 8999999999876531 11 111 24699999998876431 22333344444433 242 24999
Q ss_pred EEecccccccchhHHHHH----HHHHHHHHHH-cCCCC-CCccEEEEEcccCCCcccCC-----CCcccccccchhhHHH
Q 009375 411 AVNKMDAVQYSKDRFDSI----KVQLGTFLRS-CGFKD-ASLTWIPLSALENQNLVTAP-----DDGRLLSWYKGPCLLD 479 (536)
Q Consensus 411 VINKiDl~~~~~e~~eei----~~~L~~~l~~-~g~~~-~~i~vipvSA~~GenI~e~~-----~~~~~~~Wy~g~tLle 479 (536)
|+||+|+.......++++ ...+...++. .++.. .....+|+++..+.+..... .-++...|+ +.|++
T Consensus 160 V~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~--~~Ll~ 237 (270)
T 1h65_A 160 ALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWI--PHLVQ 237 (270)
T ss_dssp EEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHH--HHHHH
T ss_pred EEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcH--HHHHH
Confidence 999999975332233333 3444444432 22211 01112444444443321100 001234574 47888
Q ss_pred HHHhcC
Q 009375 480 AIDSLR 485 (536)
Q Consensus 480 ~L~~l~ 485 (536)
.|..+.
T Consensus 238 ~l~~~~ 243 (270)
T 1h65_A 238 TITEVA 243 (270)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886643
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=1.9e-14 Score=143.21 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=80.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|++|+|||||+++|++....... ...+.|.......+...+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~ 83 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS------------------------------PFQAEGLRPVMVSRTMGG 83 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC------------------------------SSCC-CCCCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC------------------------------CCCCcceeeEEEEEEECC
Confidence 56899999999999999999999964322111 113334444444556688
Q ss_pred eEEEEEeCCCcccchhhHhhhc---------ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-C---CCcEEE
Q 009375 344 YHVVVLDSPGHKDFVPNMISGA---------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-G---VDQLIV 410 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l---------~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~---vp~vIV 410 (536)
..++||||||+.+|.......+ ..+|++|||+++.... +.......+..+... + ..++|+
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~~iv 156 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-------VDELDKQVVIAITQTFGKEIWCKTLL 156 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-------CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-------CCHHHHHHHHHHHHHhchhhhcCEEE
Confidence 8999999999877643222111 2689999998876532 122333444444432 2 125999
Q ss_pred EEecccccccchhHHH
Q 009375 411 AVNKMDAVQYSKDRFD 426 (536)
Q Consensus 411 VINKiDl~~~~~e~~e 426 (536)
|+||+|+.......++
T Consensus 157 v~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 157 VLTHAQFSPPDELSYE 172 (262)
T ss_dssp EEECTTCCCSTTCCHH
T ss_pred EEeCcccCCCCCccHH
Confidence 9999999643333333
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.52 E-value=8.9e-14 Score=145.52 Aligned_cols=153 Identities=24% Similarity=0.258 Sum_probs=92.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
..|+|+|.+|+|||||+|+|++....+. ...+.|.+.....+...+..+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~-------------------------------~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD-------------------------------TKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcccc-------------------------------CCcccccCCEEEEEEECCEEE
Confidence 3599999999999999999996432110 012233333333445566889
Q ss_pred EEEeCCCcccc--------hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecc
Q 009375 347 VVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKM 415 (536)
Q Consensus 347 ~LIDTPGh~df--------~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKi 415 (536)
.++||||+... ...+...+..+|++|+|+|++.+.. ....+......++..+ +.| +|+|+||+
T Consensus 229 ~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~-----~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~ 302 (364)
T 2qtf_A 229 MLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSEN-----LLIETLQSSFEILREIGVSGKP-ILVTLNKI 302 (364)
T ss_dssp EEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHH-----HHHHHHHHHHHHHHHHTCCSCC-EEEEEECG
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-----hHHHHHHHHHHHHHHhCcCCCC-EEEEEECC
Confidence 99999996221 2234556788999999999986520 0112333334455554 345 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+.... ..+....+..+.+.+.. ...+++++||++|+|+.+
T Consensus 303 Dl~~~~---~~~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 303 DKINGD---LYKKLDLVEKLSKELYS--PIFDVIPISALKRTNLEL 343 (364)
T ss_dssp GGCCSC---HHHHHHHHHHHHHHHCS--CEEEEEECBTTTTBSHHH
T ss_pred CCCCch---HHHHHHHHHHHHHHhcC--CCCcEEEEECCCCcCHHH
Confidence 997432 11222223223333311 123679999999999986
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.52 E-value=1.1e-13 Score=130.52 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=95.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|+.|+|||||+++|++...... ..+..|+........+....
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS-----------------------------CCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceEEEEEEEEECCEE
Confidence 3468999999999999999999985432111 01112333333333333333
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.+|||||++++...+...+..++++|+|+|...... + ......+..+.. ... ++++|+||+|+...
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~-~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT------Y-ENVERWLKELRDHADSNI-VIMLVGNKSDLRHL 149 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH------H-HTHHHHHHHHHHHSCTTC-EEEEEEECGGGGGG
T ss_pred EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH------H-HHHHHHHHHHHHhcCCCC-cEEEEEECcccccc
Confidence 456789999998887777777788999999999875310 1 111122222222 234 49999999999753
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ ....+....+ +.++.+||+++.|+.+
T Consensus 150 ~~~~~~----~a~~l~~~~~-----~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 150 RAVPTD----EARAFAEKNG-----LSFIETSALDSTNVEA 181 (191)
T ss_dssp CCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 222222 2334444444 4789999999999985
No 177
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=141.29 Aligned_cols=83 Identities=20% Similarity=0.152 Sum_probs=48.5
Q ss_pred cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCc
Q 009375 367 QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASL 446 (536)
Q Consensus 367 ~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i 446 (536)
.+|++|||+|++... ...+..+..+..+........++| +|||+||+|+.. ...+ +++..+.... ..+
T Consensus 162 ~ad~vilV~D~t~~~-~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~--~~~v----~~~~~~~~~~----~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV--ERYI----RDAHTFALSK----KNL 229 (255)
T ss_dssp ECCEEEEEEECBC-----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC--HHHH----HHHHHHHHTS----SSC
T ss_pred cCCEEEEEEECCCCc-hhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccc--cHHH----HHHHHHHHhc----CCC
Confidence 699999999998630 011221222222222221234566 999999999963 2222 2344444332 124
Q ss_pred cEEEEEcccCCCccc
Q 009375 447 TWIPLSALENQNLVT 461 (536)
Q Consensus 447 ~vipvSA~~GenI~e 461 (536)
+++++||++|.||.+
T Consensus 230 ~~~e~SAk~g~gv~e 244 (255)
T 3c5h_A 230 QVVETSARSNVNVDL 244 (255)
T ss_dssp CEEECBTTTTBSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 789999999999986
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.48 E-value=3.8e-14 Score=143.66 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=50.3
Q ss_pred CCeEEEEEeCCCccc-------------chhhHhhhcccCCeEEEEeecC-CCcccccccchhhHHHHHHHHHHHcCCCc
Q 009375 342 KNYHVVVLDSPGHKD-------------FVPNMISGATQSDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d-------------f~~~~~~~l~~aD~~ILVVDas-~g~~e~~~~~~~~qt~e~l~ll~~~~vp~ 407 (536)
....++||||||+.. +...+..++..+|++|||+|+. .+. .......++..+...+.|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-------~~~~~~~i~~~~~~~~~~- 200 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------ANSDALQLAKEVDPEGKR- 200 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-------TTCSHHHHHHHHCSSCSS-
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-------hhhHHHHHHHHhCCCCCc-
Confidence 457899999999753 4555677788999999999974 331 111223455555556776
Q ss_pred EEEEEeccccccc
Q 009375 408 LIVAVNKMDAVQY 420 (536)
Q Consensus 408 vIVVINKiDl~~~ 420 (536)
+|+|+||+|+...
T Consensus 201 ~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 201 TIGVITKLDLMDK 213 (315)
T ss_dssp EEEEEECTTSSCS
T ss_pred EEEEEcCcccCCc
Confidence 9999999999854
No 179
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.47 E-value=1e-13 Score=142.72 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=94.0
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
||+++|..|+|||||++++.+..... . .....+.-|+.. ..+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~--~------------------------~~~~~~Tig~~~----~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL--D------------------------TLYLESTSNPSL----EHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG--G------------------------GTTCCCCCSCCC----EEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC--c------------------------cceecCeeeeee----EEEc-cEEEEE
Confidence 58999999999999999876431100 0 000111122211 1122 347799
Q ss_pred EEeCCCcccchh---hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccch
Q 009375 348 VLDSPGHKDFVP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 348 LIDTPGh~df~~---~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~ 422 (536)
||||||+++|.. .+..+++.++++|||+|++.. +.. ......+.+..+.. -++| ++||+||+|+.....
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~----~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~ 123 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YIN----AITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDF 123 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTH----HHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHH
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHH----HHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhh
Confidence 999999999963 346778999999999999865 211 11222233333322 2455 999999999984211
Q ss_pred --hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 423 --DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 --e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+..+++..+....+...++....++|+++||++ .||.+
T Consensus 124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence 112334444433343333222357899999997 58765
No 180
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.3e-14 Score=131.45 Aligned_cols=129 Identities=22% Similarity=0.203 Sum_probs=77.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|++....... .....+++. .+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~----------------------------~~~~~~~~~-------~~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------------------------VSQEPLSAA-------DYDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------------------------------CCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc----------------------------ccCCCceee-------eecC
Confidence 45689999999999999999999854321100 000111111 1145
Q ss_pred eEEEEEeCCCcccchhhHhhhccc----CCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEEe
Q 009375 344 YHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVN 413 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~----aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVIN 413 (536)
..+.||||||+..+...+...+.. +|++|||+|++.. ... +.....++..++.. .++| +|||+|
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 164 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD--PKK---LTTTAEFLVDILSITESSCENGID-ILIACN 164 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC--HHH---HHHHHHHHHHHHHHHHHHSTTCCC-EEEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC--chh---HHHHHHHHHHHHhhhhhccccCCC-EEEEEE
Confidence 678999999998886665555554 8999999999821 011 11222222223222 2566 999999
Q ss_pred cccccccchhHHHHHHHHHHHH
Q 009375 414 KMDAVQYSKDRFDSIKVQLGTF 435 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~ 435 (536)
|+|+... ...+++.+.+...
T Consensus 165 K~Dl~~~--~~~~~~~~~l~~~ 184 (193)
T 2ged_A 165 KSELFTA--RPPSKIKDALESE 184 (193)
T ss_dssp CTTSTTC--CCHHHHHHHHHHH
T ss_pred chHhcCC--CCHHHHHHHHHHH
Confidence 9999843 2233444444433
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.47 E-value=9e-14 Score=156.88 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=68.3
Q ss_pred eEEEEEeCCCccc---chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHH-HHHHHcCCCcEEEEEecccccc
Q 009375 344 YHVVVLDSPGHKD---FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 344 ~~i~LIDTPGh~d---f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l-~ll~~~~vp~vIVVINKiDl~~ 419 (536)
..++||||||+.+ ....+..++..+|++|||+|++.+. .......+ ..+...+.| +|+|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~--------s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC--------TLGERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT--------CHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc--------chhHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 4699999999654 4455667788899999999998762 22233222 234445666 999999999974
Q ss_pred cc---hh---HHHHHHHHH----HHHHHHc-C---CCCCCccEEEEEcc--------------cCCCccc
Q 009375 420 YS---KD---RFDSIKVQL----GTFLRSC-G---FKDASLTWIPLSAL--------------ENQNLVT 461 (536)
Q Consensus 420 ~~---~e---~~eei~~~L----~~~l~~~-g---~~~~~i~vipvSA~--------------~GenI~e 461 (536)
.. .+ .++.+...+ ...+... + +.....++++|||+ +|.|+.+
T Consensus 245 ~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~ 314 (695)
T 2j69_A 245 ESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPK 314 (695)
T ss_dssp GGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHH
T ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHH
Confidence 32 11 222222222 2223221 1 11123468999999 8999876
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=7.9e-14 Score=145.64 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=75.3
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC-
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 343 (536)
..++|+|+|++|+|||||+++|++........ .........+++++......+...+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~----------------------~~~~~~~~~~ti~~~~~~~~~~~~~~ 93 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV----------------------IPGAAEKIERTVQIEASTVEIEERGV 93 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC-------------------------------------CEEEEEEEEC----CE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc----------------------ccCCCcccCCceeEEEEEEEeecCCc
Confidence 35789999999999999999987532111000 0000011112233332222233333
Q ss_pred -eEEEEEeCCCc-------ccchhhHh-------hhcc-------------cCCeEEEEeecCCCcccccccchhhHHHH
Q 009375 344 -YHVVVLDSPGH-------KDFVPNMI-------SGAT-------------QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (536)
Q Consensus 344 -~~i~LIDTPGh-------~df~~~~~-------~~l~-------------~aD~~ILVVDas~g~~e~~~~~~~~qt~e 395 (536)
..++||||||+ +.|..... .+++ .+|++||+|+..... +.....+
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~-------l~~~d~~ 166 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-------LKPLDVA 166 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSS-------CCHHHHH
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCC-------cchhHHH
Confidence 47899999998 33322221 2221 245788888763221 2333334
Q ss_pred HHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 396 ~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
++..+. .++| +|+|+||+|+.. ...+..+...+..+++..++ +++++||++|.| .+
T Consensus 167 ~~~~l~-~~~p-iIlV~NK~Dl~~--~~ev~~~k~~i~~~~~~~~i-----~~~~~Sa~~~~~-~e 222 (361)
T 2qag_A 167 FMKAIH-NKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHNI-----KIYHLPDAESDE-DE 222 (361)
T ss_dssp HHHHTC-S-SC-EEEEEECCSSSC--HHHHHHHHHHHHHHTTCC-C-----CSCCCC---------
T ss_pred HHHHhc-cCCC-EEEEEECCCCCC--HHHHHHHHHHHHHHHHHCCC-----CEEeCCCcCCCc-ch
Confidence 443332 3566 999999999984 34444455566666655554 779999999998 44
No 183
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.41 E-value=5.3e-13 Score=138.84 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=67.0
Q ss_pred ecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009375 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 340 ~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
...++.++||||||...- ....+..+|++|+|+|+..+..... +.. . .+..| +|||+||+|+..
T Consensus 168 ~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~---l~~---~------~~~~p-~ivVlNK~Dl~~ 231 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQG---IKK---G------VLELA-DIVVVNKADGEH 231 (355)
T ss_dssp HHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTT---CCT---T------SGGGC-SEEEEECCCGGG
T ss_pred hhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHH---HHH---h------HhhcC-CEEEEECCCCcC
Confidence 346788999999995432 2233478999999999876532111 110 0 12235 899999999973
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCC--CccEEEEEcccCCCccc
Q 009375 420 YSKDRFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~--~i~vipvSA~~GenI~e 461 (536)
....+.....+...+..+..... ..+++++||++|+||.+
T Consensus 232 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~ 273 (355)
T 3p32_A 232 --HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAE 273 (355)
T ss_dssp --HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHH
T ss_pred --hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHH
Confidence 33444455566665544432111 24789999999999986
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=3.8e-13 Score=142.27 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=47.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEE-EEEE---------
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAV--------- 336 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi-~~~~--------- 336 (536)
++|+|+|.+|+|||||+|+|++....+... ..++.++..|+.. .+..
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~-----------------------p~tT~~~~~g~~~~~~~~~~~~l~~~~ 57 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANY-----------------------PFTTIEANVGVTYAITDHPCKELGCSP 57 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-------------------------------------CCEEEEEEEEECSCSSSCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCC-----------------------CCcccCCceEEEeeccCCchHHhhhhc
Confidence 479999999999999999999654111110 1112222222210 0000
Q ss_pred -----EEee-cCCeEEEEEeCCCcccc-------hhhHhhhcccCCeEEEEeecCCC
Q 009375 337 -----AYFD-SKNYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVG 380 (536)
Q Consensus 337 -----~~~~-~~~~~i~LIDTPGh~df-------~~~~~~~l~~aD~~ILVVDas~g 380 (536)
..+. .....+.||||||+... ....+..++.+|++|+|+|+..+
T Consensus 58 ~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 58 NPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp CCSSSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccccccccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 0000 01357999999997542 22334567889999999999875
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.37 E-value=5.4e-13 Score=138.55 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCeEEEEEeCCCccc-------------chhhHhhhcccC-CeEEEEeecCCCcccccccchhhHH-HHHHHHHHHcCCC
Q 009375 342 KNYHVVVLDSPGHKD-------------FVPNMISGATQS-DAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVD 406 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d-------------f~~~~~~~l~~a-D~~ILVVDas~g~~e~~~~~~~~qt-~e~l~ll~~~~vp 406 (536)
....++||||||... +...+..++..+ +++|+|++++.+ +..+. ...+..+...+.|
T Consensus 128 ~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--------~~~~~~~~i~~~~~~~~~~ 199 (353)
T 2x2e_A 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------LANSDALKVAKEVDPQGQR 199 (353)
T ss_dssp TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--------GGGCHHHHHHHHHCTTCTT
T ss_pred CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--------cchhHHHHHHHHhCcCCCc
Confidence 357899999999532 233444555554 456667777654 22222 2244444445666
Q ss_pred cEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 407 ~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+|+||+|+........+ + +... ...+.....+++++||++|.|+.+
T Consensus 200 -~i~V~NK~Dl~~~~~~~~~-~---~~~~--~~~l~~~~~~v~~~SA~~~~~i~~ 247 (353)
T 2x2e_A 200 -TIGVITKLDLMDEGTDARD-V---LENK--LLPLRRGYIGVVNRSQKDIDGKKD 247 (353)
T ss_dssp -EEEEEECGGGSCTTCCCHH-H---HTTC--SSCCTTCEEECCCCCHHHHHTTCC
T ss_pred -eEEEeccccccCcchhHHH-H---HhCC--cccccCCceEEEeCCccccccccc
Confidence 9999999999853221111 1 1110 011111123578999999999986
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=1.7e-12 Score=137.99 Aligned_cols=148 Identities=21% Similarity=0.271 Sum_probs=89.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-CeE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYH 345 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~ 345 (536)
..|+|+|++|||||||+++|++....+.... .++..+ .... +... ...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~-----------------------ftTl~p------~~G~--V~~~~~~~ 206 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYP-----------------------FTTLSP------NLGV--VEVSEEER 206 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCT-----------------------TCSSCC------EEEE--EECSSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcc-----------------------cceecc------eeeE--EEecCcce
Confidence 4589999999999999999986533221110 011111 1122 2333 378
Q ss_pred EEEEeCCCcccc-------hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEecccc
Q 009375 346 VVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDA 417 (536)
Q Consensus 346 i~LIDTPGh~df-------~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINKiDl 417 (536)
++++|+||+... .......+..++.+|+|+|+. . ..+..+....++...+... ...| .|||+||+|+
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~---~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl 281 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-D---EPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDL 281 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-S---CHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTT
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-c---CCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCCh
Confidence 999999997432 222334456799999999996 1 1112222233333333332 2445 7889999998
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ..+ ..+...++..+ +++|++||++++|+.+
T Consensus 282 ~~~--~~~----~~l~~~l~~~g-----~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 282 LEE--EAV----KALADALAREG-----LAVLPVSALTGAGLPA 314 (416)
T ss_dssp SCH--HHH----HHHHHHHHTTT-----SCEEECCTTTCTTHHH
T ss_pred hhH--HHH----HHHHHHHHhcC-----CeEEEEECCCccCHHH
Confidence 742 222 33444444333 3789999999999986
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.34 E-value=3.1e-12 Score=132.94 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=58.0
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009375 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
..+..+.||||||..... ......+|++|+|+|+..+.. . ...+. ..+..| .|+|+||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~------~-~~i~~-----~il~~~-~ivVlNK~Dl~~- 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE------L-QGIKR-----GIIEMA-DLVAVTKSDGDL- 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------------------CCSC-SEEEECCCSGGG-
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh------H-HHhHH-----HHHhcC-CEEEEeeecCCC-
Confidence 367789999999954221 223567999999999986521 0 00111 113455 789999999973
Q ss_pred chhHHHHHHHHHHHHHHHcCCC--CCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~--~~~i~vipvSA~~GenI~e 461 (536)
..........+...++..... ....+++++||++|+|+.+
T Consensus 227 -~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~ 268 (349)
T 2www_A 227 -IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISE 268 (349)
T ss_dssp -HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHH
T ss_pred -chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHH
Confidence 222222233333333221100 0124789999999999986
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.33 E-value=2.2e-12 Score=141.88 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=57.3
Q ss_pred eEEEEEeCCCccc-----------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEE
Q 009375 344 YHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (536)
Q Consensus 344 ~~i~LIDTPGh~d-----------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVI 412 (536)
..++||||||+.+ |...+..++..+|++|||+|+.... +......++..+...+.| +|+|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE-------ISDEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC-------CCHHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC-------CCHHHHHHHHHHHhcCCC-EEEEE
Confidence 3689999999765 5566667788899999999998621 234556666666666666 99999
Q ss_pred ecccccccchhHHHHHHHHHH
Q 009375 413 NKMDAVQYSKDRFDSIKVQLG 433 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~ 433 (536)
||+|++. ...+.++...+.
T Consensus 226 NK~Dl~~--~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADMVE--TQQLMRVYGALM 244 (550)
T ss_dssp ECGGGSC--HHHHHHHHHHHH
T ss_pred ECCCccC--HHHHHHHHHHhh
Confidence 9999984 344444444443
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.32 E-value=1.6e-12 Score=134.66 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=63.7
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009375 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
..++.++||||||+.++... ....+|++|+|+|+..+.. +..+. . ...++| +++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~---~~~l~----~-----~~~~~p-~ivv~NK~Dl~~- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD---LQGIK----K-----GLMEVA-DLIVINKDDGDN- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC---------CCCC----H-----HHHHHC-SEEEECCCCTTC-
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH---HHHHH----H-----hhhccc-CEEEEECCCCCC-
Confidence 45788999999998765443 3478999999999976521 11111 0 112345 789999999973
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCC--CccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~--~i~vipvSA~~GenI~e 461 (536)
...+....+.+...+..++.... ..+++++||++|+|+.+
T Consensus 209 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~ 250 (341)
T 2p67_A 209 -HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDE 250 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHH
T ss_pred -hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHH
Confidence 22344444455554444331101 23689999999999986
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.32 E-value=2.1e-12 Score=123.70 Aligned_cols=97 Identities=8% Similarity=0.126 Sum_probs=59.9
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++||||+|+..... . .....+.+|+|+|+..+. .... . .+...+.| ++||+||+|+....
T Consensus 107 ~~~d~iiidt~G~~~~~~-~--~~~~~~~~i~vvd~~~~~--------~~~~-~---~~~~~~~~-~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV-D--FDLGENYRVVMVSVTEGD--------DVVE-K---HPEIFRVA-DLIVINKVALAEAV 170 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG-G--CCCSCSEEEEEEEGGGCT--------THHH-H---CHHHHHTC-SEEEEECGGGHHHH
T ss_pred CCCCEEEEeCCCCCCCCc-h--hccccCcEEEEEeCCCcc--------hhhh-h---hhhhhhcC-CEEEEecccCCcch
Confidence 457899999999521111 0 112468899999998652 1111 1 12234566 79999999997421
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...++++.+.+.. .+ ..++++++||++|+|+.+
T Consensus 171 ~~~~~~~~~~~~~----~~---~~~~i~~~Sa~~g~gi~~ 203 (221)
T 2wsm_A 171 GADVEKMKADAKL----IN---PRAKIIEMDLKTGKGFEE 203 (221)
T ss_dssp TCCHHHHHHHHHH----HC---TTSEEEECBTTTTBTHHH
T ss_pred hhHHHHHHHHHHH----hC---CCCeEEEeecCCCCCHHH
Confidence 1234444444433 22 235789999999999986
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.31 E-value=7.6e-13 Score=137.63 Aligned_cols=105 Identities=14% Similarity=0.223 Sum_probs=66.7
Q ss_pred CCeEEEEEeCCCcccc-------------hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcE
Q 009375 342 KNYHVVVLDSPGHKDF-------------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df-------------~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~v 408 (536)
....++||||||...+ ...+..++..+|++|||+|+..... ........+..+...+.+ +
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~------~~~~~~~l~~~~~~~~~~-~ 206 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL------ATSDAIKISREVDPSGDR-T 206 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG------GGCHHHHHHHHSCTTCTT-E
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc------CCHHHHHHHHHhcccCCC-E
Confidence 4567999999997765 5556677889999999998754210 112223333333344556 9
Q ss_pred EEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 409 IVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
|+|+||+|++.......+ . +..... ....+|++++++++.++.+.
T Consensus 207 i~V~nK~Dl~~~~~~~~~----~----~~~~~~-~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 207 FGVLTKIDLMDKGTDAVE----I----LEGRSF-KLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEEEECGGGCCTTCCSHH----H----HTTSSS-CCSSCCEEECCCCHHHHHTT
T ss_pred EEEEeCCccCCCcccHHH----H----HcCccc-cccCCeEEEEECChHHhccC
Confidence 999999999853222211 1 111111 12347899999999888754
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.30 E-value=1.4e-12 Score=147.56 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=65.0
Q ss_pred CCeEEEEEeCCCccc-------------chhhHhhhc-ccCCeEEEEeecCCCcccccccchhhHHH-HHHHHHHHcCCC
Q 009375 342 KNYHVVVLDSPGHKD-------------FVPNMISGA-TQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSFGVD 406 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d-------------f~~~~~~~l-~~aD~~ILVVDas~g~~e~~~~~~~~qt~-e~l~ll~~~~vp 406 (536)
...+++||||||... +...+..++ ..+|++|+|+|++.+. ..+.. .++..+...+.|
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~--------~~~d~l~ll~~L~~~g~p 219 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKIAKEVDPQGQR 219 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCS--------SSCHHHHHHHHHCTTCSS
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCc--------chhHHHHHHHHHHhcCCC
Confidence 456799999999433 122233333 4689999999999762 22232 455666666777
Q ss_pred cEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 407 ~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+|+||+|++...... ..+. .. +...+.....+++++||++|.|+.+
T Consensus 220 -vIlVlNKiDlv~~~~~~-~~il---~~--~~~~l~lg~~~VV~iSA~~G~Gvde 267 (772)
T 3zvr_A 220 -TIGVITKLDLMDEGTDA-RDVL---EN--KLLPLRRGYIGVVNRSQKDIDGKKD 267 (772)
T ss_dssp -EEEEEECTTSSCTTCCS-HHHH---TT--CSSCCSSCEEECCCCCCEESSSSEE
T ss_pred -EEEEEeCcccCCcchhh-HHHH---HH--HhhhhhccCCceEEecccccccchh
Confidence 99999999998532221 1111 00 0011111224679999999999986
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.23 E-value=3.8e-11 Score=117.97 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=62.5
Q ss_pred CeEEEEEeCCCcccchhh------HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009375 343 NYHVVVLDSPGHKDFVPN------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~------~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.+.++||||||..++... +...+.. +++|+|+|+........ +..............++| +++|+||+|
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~---~~~~~~~~~~~~~~~~~p-~~iv~NK~D 182 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPND---YCFVRFFALLIDLRLGAT-TIPALNKVD 182 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHH---HHHHHHHHHHHHHHHTSC-EEEEECCGG
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHH---HHHHHHHHHHHhcccCCC-eEEEEeccc
Confidence 357999999997665322 2235566 89999999875421111 111111112223445677 899999999
Q ss_pred ccccchhHHHHHHHHH---HH---------------------HHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 417 AVQYSKDRFDSIKVQL---GT---------------------FLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L---~~---------------------~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... ...+++.+.+ .. +++.++. .++++++||++|+|+.+
T Consensus 183 ~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 183 LLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTREGFED 246 (262)
T ss_dssp GCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTCTTHHH
T ss_pred cccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCcccHHH
Confidence 8742 2122222211 11 1233332 23679999999999986
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=6.5e-11 Score=125.94 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=78.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--CC
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~ 343 (536)
.++|+|+|+.|+|||||+++|++........ +... ... ...+........+.. ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~------------~~~~------~~~-----~~t~~~~~i~~v~q~~~~~ 87 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY------------PGPS------HRI-----KKTVQVEQSKVLIKEGGVQ 87 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCC------------CSCC----------------CCEEEEEECC------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCC------------CCcc------cCC-----ccceeeeeEEEEEecCCcc
Confidence 4789999999999999999999654311100 0000 000 000111110011111 22
Q ss_pred eEEEEEeCCCcccchh------hH-------------------hhhccc--CCeEEEEeecC-CCcccccccchhhHHHH
Q 009375 344 YHVVVLDSPGHKDFVP------NM-------------------ISGATQ--SDAAILVIDAS-VGSFEVGMNTAKGLTRE 395 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~------~~-------------------~~~l~~--aD~~ILVVDas-~g~~e~~~~~~~~qt~e 395 (536)
..+++|||||...+.. .+ ...+.. ++++||+++.+ .+ +.....+
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~--------L~~~d~~ 159 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--------LKPLDIE 159 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS--------CCHHHHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC--------CCHHHHH
Confidence 4689999999765421 00 111223 45677777665 34 3334444
Q ss_pred HHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 396 ~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
++..+.. +++ +|+|+||+|+. ....+..+++.+...+...++ +++.+||++++++.+
T Consensus 160 ~lk~L~~-~v~-iIlVinK~Dll--~~~ev~~~k~~i~~~~~~~~i-----~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 160 FMKRLHE-KVN-IIPLIAKADTL--TPEECQQFKKQIMKEIQEHKI-----KIYEFPETDDEEENK 216 (418)
T ss_dssp HHHHHTT-TSE-EEEEEESTTSS--CHHHHHHHHHHHHHHHHHHTC-----CCCCCC---------
T ss_pred HHHHHhc-cCc-EEEEEEcccCc--cHHHHHHHHHHHHHHHHHcCC-----eEEeCCCCCCcCHHH
Confidence 5554443 565 99999999998 345566666777777777765 568999999998864
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.17 E-value=6.7e-11 Score=120.41 Aligned_cols=159 Identities=17% Similarity=0.193 Sum_probs=73.2
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee--cC
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SK 342 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~ 342 (536)
-.++|+|+|+.|+|||||+++|++....+... +. ..+. .. ..++........+. ..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-------~~g~------------~~--~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS-------GAAE------------KI--ERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc-------cCCc------------cc--CCcceEeeEEEEecCCCc
Confidence 35789999999999999999988532111110 00 0000 00 00000000011111 12
Q ss_pred CeEEEEEeCCCc-------ccchhhHh-------hhcc-------------cCCeEEEEeecCCCcccccccchhhHHHH
Q 009375 343 NYHVVVLDSPGH-------KDFVPNMI-------SGAT-------------QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (536)
Q Consensus 343 ~~~i~LIDTPGh-------~df~~~~~-------~~l~-------------~aD~~ILVVDas~g~~e~~~~~~~~qt~e 395 (536)
...+++|||||+ +.+..... ..++ .++++||+++.+.+ + +.....+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~----~---Ld~~~~~ 147 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH----G---LKPLDVA 147 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS----S---CCHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc----C---CCHHHHH
Confidence 457899999997 33322111 1111 13456666665432 1 2223333
Q ss_pred HHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 396 ~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
.+..+. ..++ +++|+||.|+.. ...+...++++..+++..++ +|+++||++| |+.+.
T Consensus 148 ~l~~l~-~~~~-iilV~~K~Dl~~--~~e~~~~~~~~~~~~~~~~~-----~~~e~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 148 FMKAIH-NKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHNI-----KIYHLPDAES-DEDED 204 (301)
T ss_dssp HHHHHT-TTSC-EEEEECCGGGSC--HHHHHHHHHHHHHHHHHTTC-----CCCCCC----------
T ss_pred HHHHHH-hcCC-EEEEEEeCCCCC--HHHHHHHHHHHHHHHHHcCC-----eEEecCCccc-cccHH
Confidence 333332 2344 999999999973 33344445666777777664 6799999999 99873
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.16 E-value=2e-11 Score=128.07 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=77.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
-..+|+|||.||+|||||+|+|++....+... ++.|.+.....+...+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~-------------------------------pftT~~~~~g~~~~~~~ 119 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEY-------------------------------EFTTLVTVPGVIRYKGA 119 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGT-------------------------------CSSCCCEEEEEEEETTE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCC-------------------------------CCceeeeeeEEEEeCCc
Confidence 34689999999999999999999754433221 33444444444667889
Q ss_pred EEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc----CCCcEEEEEe
Q 009375 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVN 413 (536)
Q Consensus 345 ~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----~vp~vIVVIN 413 (536)
.+.|+||||... .....+..++.+|++++|+|+..+. .....+...+... ..+|.++++|
T Consensus 120 ~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~---------~~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 120 KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL---------HHKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH---------HHHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH---------HHHHHHHHHHHHhhHhhccCChhhhhh
Confidence 999999999533 2345567788899999999998641 1222222223332 2234689999
Q ss_pred ccccc
Q 009375 414 KMDAV 418 (536)
Q Consensus 414 KiDl~ 418 (536)
|+|..
T Consensus 191 K~d~~ 195 (376)
T 4a9a_A 191 KKEKG 195 (376)
T ss_dssp ECSSS
T ss_pred Hhhhh
Confidence 99963
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=1.2e-10 Score=121.50 Aligned_cols=84 Identities=19% Similarity=0.108 Sum_probs=53.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee------
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD------ 340 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~------ 340 (536)
++|+|+|.+|+|||||+|+|++....+... ...+.++..|+ ..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~-----------------------p~tTi~p~~g~------v~~~~~r~~~ 53 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANY-----------------------PFCTIEPNTGV------VPMPDPRLDA 53 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-----------------------------CCCCCCCCSSE------EECCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCC-----------------------CCceECceEEE------EecCCcccce
Confidence 689999999999999999999643211110 01111222221 0110
Q ss_pred ---------cCCeEEEEEeCCCcccch-------hhHhhhcccCCeEEEEeecCC
Q 009375 341 ---------SKNYHVVVLDSPGHKDFV-------PNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 341 ---------~~~~~i~LIDTPGh~df~-------~~~~~~l~~aD~~ILVVDas~ 379 (536)
.....+.||||||+..+. ...+..++.+|++|+|+|+..
T Consensus 54 l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 54 LAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 012579999999987653 223456788999999999986
No 198
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.06 E-value=1.8e-10 Score=118.73 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=82.5
Q ss_pred EEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecC-------CCcccccccchhhHHHHHHHHHHH-
Q 009375 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDAS-------VGSFEVGMNTAKGLTREHAQLIRS- 402 (536)
Q Consensus 331 Ti~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas-------~g~~e~~~~~~~~qt~e~l~ll~~- 402 (536)
|+.+....+..++..+.||||+|++.+...+..+++.++++|||+|.+ +.. ..+.+.....+.-.++..
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~---~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD---NENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCT---TSBHHHHHHHHHHHHHTSG
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccc---cHhHHHHHHHHHHHHhhhh
Confidence 344445556778899999999999999999999999999999999876 211 112222222222222221
Q ss_pred --cCCCcEEEEEecccccccc----------------hhHHHHHHHHHHHHHHHcC-CCCCCccEEEEEcccCCCccc
Q 009375 403 --FGVDQLIVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCG-FKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 403 --~~vp~vIVVINKiDl~~~~----------------~e~~eei~~~L~~~l~~~g-~~~~~i~vipvSA~~GenI~e 461 (536)
.++| +||++||+|+.... ....++..+.+...+.... .....+.++.+||++++||..
T Consensus 231 ~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 231 WFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp GGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred ccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 2445 99999999986421 1234444444444444333 223456788999999999975
No 199
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.02 E-value=3.8e-10 Score=116.86 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=81.3
Q ss_pred EEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCc---cc-ccccchhhHHHHHHHHHHH---c
Q 009375 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FE-VGMNTAKGLTREHAQLIRS---F 403 (536)
Q Consensus 331 Ti~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~---~e-~~~~~~~~qt~e~l~ll~~---~ 403 (536)
|+.+....+..++..+.||||+|++.|...+..+++.++++|||+|.+.-. .+ ...+.+.....+...++.. .
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 444455567778899999999999999999999999999999999997200 00 0111222222222233332 2
Q ss_pred CCCcEEEEEecccccccc---------------hhHHHHHHHHHHHHH------HHcCCCC------------CCccEEE
Q 009375 404 GVDQLIVAVNKMDAVQYS---------------KDRFDSIKVQLGTFL------RSCGFKD------------ASLTWIP 450 (536)
Q Consensus 404 ~vp~vIVVINKiDl~~~~---------------~e~~eei~~~L~~~l------~~~g~~~------------~~i~vip 450 (536)
++| +||++||+|+.... ...+++..+.+...+ ..+.... ..+.++.
T Consensus 228 ~~p-iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 228 GAV-KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TSE-EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCe-EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 445 99999999986310 012334444444433 2222211 2467899
Q ss_pred EEcccCCCccc
Q 009375 451 LSALENQNLVT 461 (536)
Q Consensus 451 vSA~~GenI~e 461 (536)
+||+.+.||..
T Consensus 307 TsA~dt~nv~~ 317 (340)
T 4fid_A 307 TNATDGSNIKR 317 (340)
T ss_dssp ECTTCHHHHHH
T ss_pred EEeeCcHHHHH
Confidence 99999999975
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.98 E-value=3.9e-10 Score=118.04 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=29.3
Q ss_pred CeEEEEEeCCCcccc-------hhhHhhhcccCCeEEEEeecCC
Q 009375 343 NYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 343 ~~~i~LIDTPGh~df-------~~~~~~~l~~aD~~ILVVDas~ 379 (536)
...+.||||||+..+ ....+..++.+|++|+|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 357999999997654 2345567889999999999985
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.98 E-value=1.2e-09 Score=112.86 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=57.8
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009375 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
..+..++||||||...-.. .....+|++++|+|+..+.. ...+... +. .++ .++|+||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~~i~~~-------i~--~~~-~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQGIKKG-------IF--ELA-DMIAVNKADDGDG 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCTT-------HH--HHC-SEEEEECCSTTCC
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HHHHHHH-------Hh--ccc-cEEEEEchhccCc
Confidence 3678899999999643211 22467999999999865421 0001000 01 123 4777899997632
Q ss_pred chhHHHHHHHHHHHHHHHcCCC--CCCccEEEEEcccCCCccc
Q 009375 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~--~~~i~vipvSA~~GenI~e 461 (536)
........+.+...+...... ....+++++||++|+|+.+
T Consensus 209 -~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~ 250 (337)
T 2qm8_A 209 -ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDS 250 (337)
T ss_dssp -HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHH
T ss_pred -hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHH
Confidence 222222333444333222210 0023689999999999986
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.98 E-value=1.7e-09 Score=103.57 Aligned_cols=96 Identities=11% Similarity=0.110 Sum_probs=55.3
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..+.++|++|..... ...-...+..++|+|+..+... .. . . ...++.| ++||+||+|+.....
T Consensus 118 ~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~-----~~-~---~---~~~~~~~-~iiv~NK~Dl~~~~~ 181 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDT-----IE-K---H---PGIMKTA-DLIVINKIDLADAVG 181 (226)
T ss_dssp GCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTT-----TT-T---C---HHHHTTC-SEEEEECGGGHHHHT
T ss_pred CCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhh-----Hh-h---h---hhHhhcC-CEEEEeccccCchhH
Confidence 3478999999942211 1111235677888887543210 00 0 0 1113556 799999999974211
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..++++.+.+. .++ ...+++++||++|+|+.+
T Consensus 182 ~~~~~~~~~~~----~~~---~~~~~~~~Sa~~g~gv~~ 213 (226)
T 2hf9_A 182 ADIKKMENDAK----RIN---PDAEVVLLSLKTMEGFDK 213 (226)
T ss_dssp CCHHHHHHHHH----HHC---TTSEEEECCTTTCTTHHH
T ss_pred HHHHHHHHHHH----HhC---CCCeEEEEEecCCCCHHH
Confidence 23333333333 222 134789999999999986
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.81 E-value=1.2e-08 Score=108.48 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=74.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|+.|+|||||++.|++.... ...+ . ....+.+.......+....
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~--g~~~--------------------~-----~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFE--GEPA--------------------T-----HTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC----------------------------------CCSSCEEEEEEEEEEC--
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCcccc--CCcC--------------------C-----CCCccceEeeEEEEeecCc
Confidence 34567999999999999999999865210 0000 0 0001122221111122222
Q ss_pred --eEEEEEeCCCcccch-------------hh-----Hhh--hc-------cc--CC-eEEEEeecCCCcccccccchhh
Q 009375 344 --YHVVVLDSPGHKDFV-------------PN-----MIS--GA-------TQ--SD-AAILVIDASVGSFEVGMNTAKG 391 (536)
Q Consensus 344 --~~i~LIDTPGh~df~-------------~~-----~~~--~l-------~~--aD-~~ILVVDas~g~~e~~~~~~~~ 391 (536)
..++++|+||..... .. +.. ++ .. +| +++||+|+..+ +..
T Consensus 93 l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--------l~~ 164 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--------LKS 164 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----------CH
T ss_pred cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--------CCH
Confidence 368999999954321 11 011 11 11 23 46677888765 344
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCC
Q 009375 392 LTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (536)
Q Consensus 392 qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (536)
...+++..+. .+++ +|+|+||+|.+ .......+...+...++..|+
T Consensus 165 ~Dieilk~L~-~~~~-vI~Vi~KtD~L--t~~E~~~l~~~I~~~L~~~gi 210 (427)
T 2qag_B 165 LDLVTMKKLD-SKVN-IIPIIAKADAI--SKSELTKFKIKITSELVSNGV 210 (427)
T ss_dssp HHHHHHHHTC-SCSE-EEEEESCGGGS--CHHHHHHHHHHHHHHHBTTBC
T ss_pred HHHHHHHHHh-hCCC-EEEEEcchhcc--chHHHHHHHHHHHHHHHHcCC
Confidence 5555555554 4555 99999999998 445566666666665554443
No 204
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.81 E-value=4.5e-09 Score=109.37 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=82.1
Q ss_pred EEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcc---cc-cccchhhHHHHHHHHHHH----
Q 009375 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSF---EV-GMNTAKGLTREHAQLIRS---- 402 (536)
Q Consensus 331 Ti~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~---e~-~~~~~~~qt~e~l~ll~~---- 402 (536)
|+.+....+..++..+.||||+|++.|...+..+++.++++|||+|.+.... +. ..+.+. .....+..+..
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~-e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMH-ESMKLFDSICNNKWF 258 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHH-HHHHHHHHHHTCGGG
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHH-HHHHHHHHHHcCccc
Confidence 3333444566678999999999999999999999999999999999986210 00 011122 22222222222
Q ss_pred cCCCcEEEEEecccccccc---------------hhHHHHHHHHHHHHHHHcCCC--CCCccEEEEEcccCCCccc
Q 009375 403 FGVDQLIVAVNKMDAVQYS---------------KDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 403 ~~vp~vIVVINKiDl~~~~---------------~e~~eei~~~L~~~l~~~g~~--~~~i~vipvSA~~GenI~e 461 (536)
.++| +|||+||+|+.... ....++..+.+...+..+... ...+.++++||++|+||.+
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 2444 99999999986211 122344444444433333221 2456889999999999986
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.77 E-value=3.6e-09 Score=114.99 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCccc----chhhHhhh--cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcE-EEEEec
Q 009375 342 KNYHVVVLDSPGHKD----FVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL-IVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d----f~~~~~~~--l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~v-IVVINK 414 (536)
.++.++||||||... +...+... +..+|.+|||+|+..+. . .......+... +| + +||+||
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~--------~--~~~~a~~~~~~-~~-i~gvVlNK 249 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ--------A--CEAQAKAFKDK-VD-VASVIVTK 249 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT--------T--HHHHHHHHHHH-HC-CCCEEEEC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc--------c--HHHHHHHHHhh-cC-ceEEEEeC
Confidence 677899999999653 22222111 23689999999998762 1 11222222221 33 4 899999
Q ss_pred ccccc
Q 009375 415 MDAVQ 419 (536)
Q Consensus 415 iDl~~ 419 (536)
+|...
T Consensus 250 ~D~~~ 254 (504)
T 2j37_W 250 LDGHA 254 (504)
T ss_dssp TTSCC
T ss_pred Ccccc
Confidence 99874
No 206
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.75 E-value=3.8e-08 Score=98.57 Aligned_cols=142 Identities=18% Similarity=0.255 Sum_probs=81.4
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--CC
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~ 343 (536)
.++|+|+|+.|+|||||++.|++......... ...|. +........++.+- +.. -.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i--------~~~g~---------~i~~~~~~~~i~~v-----~q~~~~~ 59 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASS--------WNREE---------KIPKTVEIKAIGHV-----IEEGGVK 59 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-----------------------------CCCCCSCCEEEES-----CC----C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCcc--------ccCCc---------ccCcceeeeeeEEE-----eecCCCc
Confidence 37899999999999999999996542211100 00000 00000011111110 111 12
Q ss_pred eEEEEEeCCCcccc-------------hh-----hHhh----------hcccCCeEEEEeecC-CCcccccccchhhHHH
Q 009375 344 YHVVVLDSPGHKDF-------------VP-----NMIS----------GATQSDAAILVIDAS-VGSFEVGMNTAKGLTR 394 (536)
Q Consensus 344 ~~i~LIDTPGh~df-------------~~-----~~~~----------~l~~aD~~ILVVDas-~g~~e~~~~~~~~qt~ 394 (536)
..++++|+||.... .. .... .+..++++||++|.. ++ +.....
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--------L~~lD~ 131 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--------LRPLDL 131 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--------CCHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--------CCHHHH
Confidence 36899999994221 00 0000 122368899999965 44 445667
Q ss_pred HHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCC
Q 009375 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (536)
Q Consensus 395 e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (536)
+.+..+... ++ +|+|+||+|.+ ........+..+...+...++
T Consensus 132 ~~l~~L~~~-~~-vI~Vi~K~D~l--t~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 132 EFMKHLSKV-VN-IIPVIAKADTM--TLEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp HHHHHHHTT-SE-EEEEETTGGGS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-Cc-EEEEEeccccC--CHHHHHHHHHHHHHHHHHcCc
Confidence 777777666 55 99999999998 455666777777777777765
No 207
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.75 E-value=1.3e-09 Score=113.94 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=83.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+++|.+|+|||||+|+|++..... .........+|+|.......+.. .+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~-------------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 214 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGK-------------------------GNVITTSYFPGTTLDMIEIPLES---GA 214 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHT-------------------------TCCCEEEECTTSSCEEEEEECST---TC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCC-------------------------ccceeecCCCCeEEeeEEEEeCC---Ce
Confidence 469999999999999999999642100 00111223356666554444332 38
Q ss_pred EEEeCCCcccc-------hhhHhhhc---ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009375 347 VVLDSPGHKDF-------VPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 347 ~LIDTPGh~df-------~~~~~~~l---~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.|+||||.... ....+..+ ...+.+++++++.+..+..++.. +.++...+.| +++++||+|
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCce-EEEEecCCc
Confidence 99999994321 11122222 66899999999864432222211 1222234555 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~ 460 (536)
.+... ..+...+.+.. .+|. .+.|.++...+++.
T Consensus 286 ~~~~~--~~~~~~~~~~~---~~g~-----~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 286 TVHRT--KLEKADSLYAN---QLGE-----LLSPPSKRYAAEFP 319 (369)
T ss_dssp CEEEE--EGGGHHHHHHH---HBTT-----TBCSSCGGGTTTCC
T ss_pred ccccc--cHHHHHHHHHH---hcCC-----ccCCCCchhhhhcc
Confidence 88432 22222233333 3342 34666666655554
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.68 E-value=3e-09 Score=111.28 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=81.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+++|.+|+|||||+|+|++....... ........+|+|.......+.. .+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~------------------------~~~~~~~~~gtT~~~~~~~~~~---~~ 213 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETE------------------------NVITTSHFPGTTLDLIDIPLDE---ES 213 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCS------------------------SCCEEECCC----CEEEEESSS---SC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccc------------------------cceecCCCCCeecceEEEEecC---Ce
Confidence 46999999999999999999964311100 0111223456666555444332 28
Q ss_pred EEEeCCCcccc-------hhhHhhh---cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009375 347 VVLDSPGHKDF-------VPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 347 ~LIDTPGh~df-------~~~~~~~---l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.|+||||..+. ....+.. ....+.+++++++....+..++.. +.++...+.| +++++||+|
T Consensus 214 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------~d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 214 SLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR--------FDYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp EEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE--------EEEecCCCce-EEEEecCcc
Confidence 99999995331 1111211 356899999999864433222211 1222234555 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcc
Q 009375 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~ 460 (536)
.+.. ...+...+.+.+ .+|. .++|.++...+++.
T Consensus 285 ~~~~--~~~~~~~~~~~~---~~g~-----~l~p~~~~~~~~~~ 318 (368)
T 3h2y_A 285 TIHR--TKLEKADELYKN---HAGD-----LLSPPTPEELENMP 318 (368)
T ss_dssp CEEE--EEHHHHHHHHHH---HBTT-----TBCSSCHHHHHTSC
T ss_pred cccc--ccHHHHHHHHHH---HhCC-----ccCCCchhhHhhcc
Confidence 9843 333333333333 3443 34666666555554
No 209
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.68 E-value=2.1e-08 Score=104.68 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=72.4
Q ss_pred EEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCc---ccc-cccchhhHHHHHHHHHHH---cCCC
Q 009375 334 VAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEV-GMNTAKGLTREHAQLIRS---FGVD 406 (536)
Q Consensus 334 ~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~---~e~-~~~~~~~qt~e~l~ll~~---~~vp 406 (536)
+....+..++..+.||||+|++.+...+..++..++++|||+|.+.-. .+. ..+.+.........++.. .++|
T Consensus 191 i~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 191 IHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred eEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 334456667899999999999999999999999999999999998620 000 011122222222222221 2444
Q ss_pred cEEEEEecccccccc----------------hhHHHHHHHHHHHHHHHcCCC--CCCccEEEEEcccCCCccc
Q 009375 407 QLIVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 407 ~vIVVINKiDl~~~~----------------~e~~eei~~~L~~~l~~~g~~--~~~i~vipvSA~~GenI~e 461 (536)
+|||+||+|+.... ....++..+.+...+..+.-. ...+.++++||++|+||.+
T Consensus 271 -iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 271 -IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp -EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred -EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 99999999986311 122344444333333222211 2356789999999999986
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.61 E-value=2.4e-07 Score=98.23 Aligned_cols=156 Identities=18% Similarity=0.131 Sum_probs=85.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-C
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-N 343 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~ 343 (536)
....|+|+|++|+|||||+|.|++....- +|.. ..+.....+ .++ . +... .
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~----------------~GsI----~~~g~~~t~-~~~------v-~q~~~~ 119 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEE----------------EGAA----KTGVVEVTM-ERH------P-YKHPNI 119 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTS----------------TTSC----CCCC----C-CCE------E-EECSSC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc----------------CceE----EECCeecce-eEE------e-cccccc
Confidence 34589999999999999999999632110 0000 000000001 111 1 1111 1
Q ss_pred eEEEEEeCCCccc---chhhHhh--hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009375 344 YHVVVLDSPGHKD---FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 344 ~~i~LIDTPGh~d---f~~~~~~--~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
..++++|+||... -....+. ++...+..++ ++...+ +.+...+...+...+.| +++|+||.|++
T Consensus 120 ~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~---------~kqrv~la~aL~~~~~p-~~lV~tkpdll 188 (413)
T 1tq4_A 120 PNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF---------KKNDIDIAKAISMMKKE-FYFVRTKVDSD 188 (413)
T ss_dssp TTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC---------CHHHHHHHHHHHHTTCE-EEEEECCHHHH
T ss_pred CCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc---------cHHHHHHHHHHHhcCCC-eEEEEecCccc
Confidence 2589999999431 1122222 3344455554 665432 35666666777777776 99999999976
Q ss_pred cc-------chhHHHHHHHHHHHHH----HHcCCCCCCccEEEEEc--ccCCCccc
Q 009375 419 QY-------SKDRFDSIKVQLGTFL----RSCGFKDASLTWIPLSA--LENQNLVT 461 (536)
Q Consensus 419 ~~-------~~e~~eei~~~L~~~l----~~~g~~~~~i~vipvSA--~~GenI~e 461 (536)
-. +....+++.+.+..+. ...|... ..+|++|+ +.+.|+++
T Consensus 189 lLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~--~~iiliSsh~l~~~~~e~ 242 (413)
T 1tq4_A 189 ITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE--PPIFLLSNKNVCHYDFPV 242 (413)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS--CCEEECCTTCTTSTTHHH
T ss_pred ccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC--CcEEEEecCcCCccCHHH
Confidence 21 1222334445555543 2333322 25799999 66667764
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=1.5e-07 Score=95.38 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=69.2
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhH
Q 009375 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.+.|||| +++|...+..+++.+|++|+|+|++...+ . . .....++..++..++| +|||+||+|+... ..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s---~-~~l~~~l~~~~~~~~p-iilv~NK~DL~~~--~~ 132 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--S---T-YIIDKFLVLAEKNELE-TVMVINKMDLYDE--DD 132 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--C---H-HHHHHHHHHHHHTTCE-EEEEECCGGGCCH--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--C---H-HHHHHHHHHHHHCCCC-EEEEEeHHHcCCc--hh
Confidence 6899999 88888888889999999999999986521 0 1 1223333444556776 8999999999742 22
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
.+ ++..+++.++- . ++++++||++|+|+.++
T Consensus 133 v~----~~~~~~~~~~~--~-~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 133 LR----KVRELEEIYSG--L-YPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp HH----HHHHHHHHHTT--T-SCEEECCTTTCTTHHHH
T ss_pred HH----HHHHHHHHHhh--h-CcEEEEECCCCcCHHHH
Confidence 22 23333333331 1 47899999999999873
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.52 E-value=7.4e-08 Score=101.57 Aligned_cols=87 Identities=18% Similarity=0.089 Sum_probs=48.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee---
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--- 340 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~--- 340 (536)
...++|+|+|.+|+|||||+|+|++....+.... ..+.++..|. ..+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p-----------------------~tTi~p~~g~------v~v~~~r 70 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFP-----------------------FCTIDPNESR------VPVPDER 70 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC------------------------------------CCSEEE------EECCCHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCC-----------------------ccccCceeEE------EEECCcc
Confidence 3457899999999999999999996532111110 0011111111 1110
Q ss_pred ------------cCCeEEEEEeCCCcccchh-------hHhhhcccCCeEEEEeecCC
Q 009375 341 ------------SKNYHVVVLDSPGHKDFVP-------NMISGATQSDAAILVIDASV 379 (536)
Q Consensus 341 ------------~~~~~i~LIDTPGh~df~~-------~~~~~l~~aD~~ILVVDas~ 379 (536)
.....+.||||||+..+.. ..+..++.+|++|+|+|+..
T Consensus 71 ~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 71 FDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 0134699999999766433 45677889999999999874
No 213
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.49 E-value=1.7e-07 Score=99.11 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=56.5
Q ss_pred EEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCc---ccc-cccchhhHHHHHHHHHHH---cCCC
Q 009375 334 VAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEV-GMNTAKGLTREHAQLIRS---FGVD 406 (536)
Q Consensus 334 ~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~---~e~-~~~~~~~qt~e~l~ll~~---~~vp 406 (536)
+....+...+..+.||||+|++.|...+..+++.++++|||+|.+.-. .+. ..+.+.....+.-.++.. .++|
T Consensus 207 i~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 207 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 286 (402)
T ss_dssp EEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred eEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence 334456667899999999999999999999999999999999998510 000 011122222222222221 2345
Q ss_pred cEEEEEeccccc
Q 009375 407 QLIVAVNKMDAV 418 (536)
Q Consensus 407 ~vIVVINKiDl~ 418 (536)
+|||+||+|+.
T Consensus 287 -iiLvgNK~DL~ 297 (402)
T 1azs_C 287 -VILFLNKQDLL 297 (402)
T ss_dssp -EEEEEECHHHH
T ss_pred -EEEEEEChhhh
Confidence 99999999985
No 214
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.46 E-value=5.3e-08 Score=65.38 Aligned_cols=26 Identities=35% Similarity=1.072 Sum_probs=24.6
Q ss_pred CceeecccccCCCCCccccccccCCC
Q 009375 49 RVWSCAICTYDNEEGMSVCDICGVLR 74 (536)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r 74 (536)
..|.|+.|||.|+..+..||||++.|
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 46999999999999999999999988
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.45 E-value=1.3e-06 Score=93.40 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=54.9
Q ss_pred CCeEEEEEeCCCcccchhh----H--hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009375 342 KNYHVVVLDSPGHKDFVPN----M--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~----~--~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.++.++||||||....... + +..+..+|.++||+|+..|. ........+.. .++...||+||+
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq----------~a~~~a~~f~~-~~~i~gVIlTKl 249 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ----------QAYNQALAFKE-ATPIGSIIVTKL 249 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GHHHHHHHHHH-SCTTEEEEEECC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch----------hHHHHHHHHHh-hCCCeEEEEECC
Confidence 4578999999994332211 1 12334589999999998651 12222232322 223367999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
|...... .+..+....+ +|+.+++. |++++++
T Consensus 250 D~~~~gG--------~~ls~~~~~g-----~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 250 DGSAKGG--------GALSAVAATG-----APIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSCSSHH--------HHHHHHHTTC-----CCEEEEEC--SSSTTCE
T ss_pred CCccccc--------HHHHHHHHHC-----CCEEEEEc--CCChHHh
Confidence 9874211 1122232333 36777775 9999763
No 216
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=6.6e-08 Score=72.96 Aligned_cols=33 Identities=24% Similarity=0.734 Sum_probs=29.0
Q ss_pred cCCCCCceeecccccCCCCCccccccccCCCCc
Q 009375 44 ETSKPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (536)
Q Consensus 44 ~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (536)
....++.|.|+.|||.|...+..||||++.|..
T Consensus 5 ~~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~ 37 (53)
T 2d9g_A 5 SSGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGT 37 (53)
T ss_dssp CSSCCCCEECSSSCCEECSSCSSCSSSCCCCCC
T ss_pred CCCCCCCcCCCCCccCCCCCCCccCCCCCcCCc
Confidence 334567899999999999999999999999964
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.45 E-value=1.7e-07 Score=97.54 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=49.1
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCc---cc-ccccchhhHHHHHHHHHHH---cCCCcEEEEEec
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FE-VGMNTAKGLTREHAQLIRS---FGVDQLIVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~---~e-~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINK 414 (536)
....+.||||+|++.|...+..+++.++++|||+|.+.-. .+ ...+.+.....+.-.++.. .++| +|||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEEC
Confidence 4578999999999999999999999999999999987100 00 0111222222222222221 2455 9999999
Q ss_pred cccc
Q 009375 415 MDAV 418 (536)
Q Consensus 415 iDl~ 418 (536)
+|+.
T Consensus 260 ~DL~ 263 (354)
T 2xtz_A 260 FDIF 263 (354)
T ss_dssp HHHH
T ss_pred cchh
Confidence 9985
No 218
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.42 E-value=8.1e-08 Score=65.88 Aligned_cols=28 Identities=29% Similarity=0.806 Sum_probs=25.9
Q ss_pred CCceeecccccCCCCCccccccccCCCC
Q 009375 48 PRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
...|.|+.|||.|+.++..||||++.|.
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 3469999999999999999999999985
No 219
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.30 E-value=4.1e-07 Score=68.16 Aligned_cols=31 Identities=29% Similarity=0.679 Sum_probs=27.4
Q ss_pred CCCceeecccccCCCCCccccccccCCCCcc
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (536)
....|.|+.|||.|+.+...||||+..|...
T Consensus 7 ~~~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 7 GPVGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp CSSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 3447999999999999999999999999654
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.25 E-value=1.2e-06 Score=92.40 Aligned_cols=88 Identities=19% Similarity=0.127 Sum_probs=55.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (536)
.+..+|+|+|++|+|||||+|+|++........ ....+.++..|+ ..+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------------------~p~tTi~p~~G~------v~v~~~r 69 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------------------YPYATIDPEEAK------VAVPDER 69 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------------------CSSCCCCTTEEE------EEECCHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccC----------------------CCceeecceeee------eeeCCcc
Confidence 345789999999999999999999744311111 011112222221 11110
Q ss_pred -------------CCeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCC
Q 009375 342 -------------KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 342 -------------~~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~ 379 (536)
-...+.+||+||... +.......++.+|++++|+|+..
T Consensus 70 ~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 70 FDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred hhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 124689999999433 33456667789999999999874
No 221
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.25 E-value=2.2e-06 Score=86.94 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=73.1
Q ss_pred cccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHH
Q 009375 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (536)
Q Consensus 354 h~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~ 433 (536)
++++.......++.+|++|+|+|++.+.+. . ......+..+...++| +|||+||+|+... ..++. .+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s-----~-~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~--~~v~~-~~~~~ 135 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN-----N-YLLDNMLVVYEYFKVE-PVIVFNKIDLLNE--EEKKE-LERWI 135 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC-----H-HHHHHHHHHHHHTTCE-EEEEECCGGGCCH--HHHHH-HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC-----H-HHHHHHHHHHHhCCCC-EEEEEEcccCCCc--cccHH-HHHHH
Confidence 555555555678999999999999865311 1 1233444455667777 8999999999842 21111 23344
Q ss_pred HHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccc-------h------hhHHHHHHhcCCC
Q 009375 434 TFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK-------G------PCLLDAIDSLRPP 487 (536)
Q Consensus 434 ~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~-------g------~tLle~L~~l~~~ 487 (536)
.+++.+++ +++++||++|+|+.++. .+.. | .||+.+|. +..+
T Consensus 136 ~~~~~~g~-----~~~~~SA~~g~gi~~L~------~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 136 SIYRDAGY-----DVLKVSAKTGEGIDELV------DYLEGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp HHHHHTTC-----EEEECCTTTCTTHHHHH------HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred HHHHHCCC-----eEEEEECCCCCCHHHHH------hhccCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 45555564 78999999999998742 2222 1 47999988 6544
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.23 E-value=8.3e-06 Score=86.97 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCcccc----hhhH--hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC-CcEEEEEec
Q 009375 342 KNYHVVVLDSPGHKDF----VPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df----~~~~--~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v-p~vIVVINK 414 (536)
.++.++||||||.... ...+ +..+..+|.++||+|+..+. .....+..+. ..+ +...+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~----------~~~~~~~~~~-~~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ----------QAGIQAKAFK-EAVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG----------GHHHHHHHHH-TTSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH----------HHHHHHHHHh-hcccCCeEEEEeC
Confidence 5678999999995543 2222 22234689999999998651 1112222222 124 447899999
Q ss_pred cccc
Q 009375 415 MDAV 418 (536)
Q Consensus 415 iDl~ 418 (536)
+|..
T Consensus 248 ~D~~ 251 (432)
T 2v3c_C 248 LDGS 251 (432)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 9986
No 223
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=98.23 E-value=4.4e-07 Score=70.65 Aligned_cols=30 Identities=27% Similarity=0.616 Sum_probs=27.0
Q ss_pred CceeecccccCCCCCccccccccCCCCccc
Q 009375 49 RVWSCAICTYDNEEGMSVCDICGVLRTPLV 78 (536)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r~~~~ 78 (536)
..|.|+.|||.|+.+...|||||+.|...+
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 369999999999999999999999997643
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.21 E-value=2.1e-06 Score=91.55 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=53.5
Q ss_pred CCeEEEEEeCCCccc------chhhHhh--hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH-HcCCCcEEEEE
Q 009375 342 KNYHVVVLDSPGHKD------FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAV 412 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d------f~~~~~~--~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~-~~~vp~vIVVI 412 (536)
.++.++||||||... +...+.. .+..++.++||+|+..|. ........+. ..++ ..||+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq----------~a~~~a~~f~~~~~~--~gVIl 245 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ----------KAYDLASRFHQASPI--GSVII 245 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GGHHHHHHHHHHCSS--EEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch----------HHHHHHHHHhcccCC--cEEEE
Confidence 467899999999544 2222211 223479999999998651 1122222222 3333 68999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
||+|....... .. .+....+ +|+.+++. |+++++
T Consensus 246 TKlD~~a~~G~----al----s~~~~~g-----~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 246 TKMDGTAKGGG----AL----SAVVATG-----ATIKFIGT--GEKIDE 279 (433)
T ss_dssp ECGGGCSCHHH----HH----HHHHHHT-----CEEEEEEC--CSSSSC
T ss_pred ecccccccchH----HH----HHHHHHC-----CCEEEEEC--CCChHh
Confidence 99998632111 11 1222233 37777775 888865
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.15 E-value=2.1e-05 Score=79.73 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=55.1
Q ss_pred CCeEEEEEeCCCccc--chhhHh------hhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009375 342 KNYHVVVLDSPGHKD--FVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d--f~~~~~------~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
.++.++||||||... ....+. ..+..+|.++||+|+..+ ......+..+.. .++-..+|+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g----------~~~~~~~~~~~~-~~~i~gvVln 247 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG----------QKAYDLASKFNQ-ASKIGTIIIT 247 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG----------GGHHHHHHHHHH-TCTTEEEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch----------HHHHHHHHHHHh-hCCCCEEEEe
Confidence 567899999999665 322221 234568999999999754 112222222332 3443678999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+|.... .. .+..+....+ +|+.+++ .|+++.+
T Consensus 248 k~D~~~~----~g----~~~~~~~~~~-----~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 248 KMDGTAK----GG----GALSAVAATG-----ATIKFIG--TGEKIDE 280 (297)
T ss_dssp CGGGCTT----HH----HHHHHHHTTT-----CCEEEEE--CSSSTTC
T ss_pred CCCCCcc----hH----HHHHHHHHHC-----cCEEEEe--CCCChhh
Confidence 9997531 11 1222333344 3666665 6888865
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.09 E-value=6.8e-06 Score=82.67 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=57.9
Q ss_pred EEeCCCcc-cchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHH
Q 009375 348 VLDSPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 348 LIDTPGh~-df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
|-+.|||. .....+...+..+|++|+|+||..+... .......+ ++..++|+|+||+|++. ....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~--------~~~~l~~~---l~~kp~ilVlNK~DL~~--~~~~- 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSS--------RNPMIEDI---LKNKPRIMLLNKADKAD--AAVT- 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTT--------SCHHHHHH---CSSSCEEEEEECGGGSC--HHHH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCcc--------CCHHHHHH---HCCCCEEEEEECcccCC--HHHH-
Confidence 44679987 4667788899999999999999876311 11111111 23344899999999984 2222
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+....+++..++ +++++||++|.|+.+
T Consensus 69 ---~~~~~~~~~~g~-----~~i~iSA~~~~gi~~ 95 (282)
T 1puj_A 69 ---QQWKEHFENQGI-----RSLSINSVNGQGLNQ 95 (282)
T ss_dssp ---HHHHHHHHTTTC-----CEEECCTTTCTTGGG
T ss_pred ---HHHHHHHHhcCC-----cEEEEECCCcccHHH
Confidence 233344444444 679999999999986
No 227
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.04 E-value=3.9e-06 Score=81.08 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=83.0
Q ss_pred cceeEEEEEecC-CCCchhhhhhhhhccccc-----ccchhhhhHHHH--hhhCCCccchhccccccccccccceEEEEE
Q 009375 264 MTQLNLAIVGHV-DSGKSTLSGRLLFLLGRI-----TQKQMHKYEKEA--KLQGKGSFAYAWALDESAEERERGITMTVA 335 (536)
Q Consensus 264 ~~~i~IaIvG~~-gsGKSTLInrLl~~~~~i-----~~~~~~~~~~~a--~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~ 335 (536)
...+++|+.|+. ..=+.+|+.+|++..-.. ..+.++-.-.+. ...+...|.+.+.+..+..||++...-...
T Consensus 14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~ 93 (227)
T 3l82_B 14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 93 (227)
T ss_dssp CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------------
T ss_pred CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhh
Confidence 456899999984 455668999998643111 111111000000 000111233333334444444432211111
Q ss_pred EEEeecCCeEEEEEeCC------CcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCC
Q 009375 336 VAYFDSKNYHVVVLDSP------GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGV 405 (536)
Q Consensus 336 ~~~~~~~~~~i~LIDTP------Gh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~v 405 (536)
...++..-.+| |+..+...+..++..+|++|||||+++... ++ ......++..++.. .++
T Consensus 94 ------~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R---~e-ak~EL~eL~~mL~ee~~L~ga 163 (227)
T 3l82_B 94 ------AVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGR 163 (227)
T ss_dssp -----------------------------CCHHHHHHHCSEEEEEEECBTTCC---CC-HHHHHHHHHHHSCTTSSCSCS
T ss_pred ------hhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhH---HH-HHHHHHHHHHHhcchhhhCCC
Confidence 01123344455 788888889999999999999999986521 11 11111111233322 355
Q ss_pred CcEEEEEecc-cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 406 DQLIVAVNKM-DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 406 p~vIVVINKi-Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
| ++|+.||. |+... -...++.+.|.- .. + ...+.+.+|||++|+||.+
T Consensus 164 p-LLVlANKqqDlp~A--ms~~EI~e~L~L--~~--l-~R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 164 P-LLVLSCISQGDVKR--MPCFYLAHELHL--NL--L-NHPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp C-EEEEEEESSTTSCB--CCHHHHHHHTTG--GG--G-CSCEEEEEEETTTCTTHHH
T ss_pred e-EEEEeCCCcCccCC--CCHHHHHHHcCC--cC--C-CCCEEEEEeECCCCcCHHH
Confidence 6 89999996 67543 222334443321 12 2 2467899999999999976
No 228
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.93 E-value=1.7e-05 Score=81.53 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=52.8
Q ss_pred CeEEEEEeCCCcccc----hhhHh--hhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH-HHcCCCcEEEEEecc
Q 009375 343 NYHVVVLDSPGHKDF----VPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKM 415 (536)
Q Consensus 343 ~~~i~LIDTPGh~df----~~~~~--~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll-~~~~vp~vIVVINKi 415 (536)
+..+.++||+|.... ...+. ..+-.+|-.++|+|+..+ .+....+..+ ...++. +|++||+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~----------~~~~~~~~~~~~~~~it--~iilTKl 278 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG----------NAIVEQARQFNEAVKID--GIILTKL 278 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT----------THHHHHHHHHHHHSCCC--EEEEECG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH----------HHHHHHHHHHHHhcCCC--EEEEeCc
Confidence 355778999995432 22221 112247999999998865 2233333333 345654 7899999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|....-.. +..++...+. |+.+++ +|+++.+
T Consensus 279 D~~a~~G~--------~l~~~~~~~~-----pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 279 DADARGGA--------ALSISYVIDA-----PILFVG--VGQGYDD 309 (328)
T ss_dssp GGCSCCHH--------HHHHHHHHTC-----CEEEEE--CSSSTTC
T ss_pred CCccchhH--------HHHHHHHHCC-----CEEEEe--CCCCccc
Confidence 97532111 1223333343 677777 8888865
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.93 E-value=4.2e-06 Score=84.18 Aligned_cols=27 Identities=33% Similarity=0.310 Sum_probs=23.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.+.++|+|+|.+|+|||||+|+|++..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc
Confidence 356899999999999999999999643
No 230
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.91 E-value=7.8e-06 Score=90.34 Aligned_cols=28 Identities=32% Similarity=0.277 Sum_probs=24.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
..+.++|+|+|.+|+|||||+|+|++..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3456889999999999999999999653
No 231
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.87 E-value=1.1e-05 Score=84.15 Aligned_cols=100 Identities=9% Similarity=0.024 Sum_probs=63.1
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHH
Q 009375 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ee 427 (536)
-+++| +++|...+......++++|+|+|+..... .+...... .++..++|+|+||+|++.. ....+.
T Consensus 53 ~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~------~l~~~piilV~NK~DLl~~-~~~~~~ 119 (369)
T 3ec1_A 53 DVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPR------FAADNPILLVGNKADLLPR-SVKYPK 119 (369)
T ss_dssp -------CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHH------HCTTSCEEEEEECGGGSCT-TCCHHH
T ss_pred CCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHH------HhCCCCEEEEEEChhcCCC-ccCHHH
Confidence 34444 67788777777788999999999986521 11111111 1223349999999999853 222344
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
+.+.+..+++..|+.. .+++++||++|+|+.++
T Consensus 120 ~~~~l~~~~~~~g~~~--~~v~~iSA~~g~gi~~L 152 (369)
T 3ec1_A 120 LLRWMRRMAEELGLCP--VDVCLVSAAKGIGMAKV 152 (369)
T ss_dssp HHHHHHHHHHTTTCCC--SEEEECBTTTTBTHHHH
T ss_pred HHHHHHHHHHHcCCCc--ccEEEEECCCCCCHHHH
Confidence 5556666677777632 36799999999999763
No 232
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.85 E-value=1.7e-05 Score=82.80 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=62.4
Q ss_pred CcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHH
Q 009375 353 GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (536)
Q Consensus 353 Gh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L 432 (536)
..++|...+....+.++++|+|+|+.... ..+..++..++ .+.| +|+|+||+|+... ....+++.+.+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--------~~~~~~l~~~~--~~~p-~ilV~NK~DL~~~-~~~~~~~~~~l 122 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--------GSWLPGLHRFV--GNNK-VLLVGNKADLIPK-SVKHDKVKHWM 122 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--------HHCCTTHHHHS--SSSC-EEEEEECGGGSCT-TSCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--------ccHHHHHHHHh--CCCc-EEEEEEChhcCCc-ccCHHHHHHHH
Confidence 35677777777777889999999998531 11111111111 1445 9999999999743 22234455556
Q ss_pred HHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009375 433 GTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 433 ~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
..+++..|+.. .+++.+||++|+|+.++
T Consensus 123 ~~~~~~~g~~~--~~v~~iSA~~g~gi~~L 150 (368)
T 3h2y_A 123 RYSAKQLGLKP--EDVFLISAAKGQGIAEL 150 (368)
T ss_dssp HHHHHHTTCCC--SEEEECCTTTCTTHHHH
T ss_pred HHHHHHcCCCc--ccEEEEeCCCCcCHHHH
Confidence 66677777632 36799999999999863
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.74 E-value=8.2e-05 Score=75.79 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=57.9
Q ss_pred hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCC
Q 009375 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (536)
Q Consensus 364 ~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~ 443 (536)
.+..+|.+|+|+|+..+.+. .......+..+...+++ .|||+||+|+... ....+..+.+..+++..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~------~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~g~-- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS------TALLDRFLVLVEANDIQ-PIICITKMDLIED--QDTEDTIQAYAEDYRNIGY-- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC------HHHHHHHHHHHHTTTCE-EEEEEECGGGCCC--HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCCEEEEEEeCCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEECCccCch--hhhHHHHHHHHHHHHhCCC--
Confidence 57889999999999876432 12334444455567787 7999999999853 2211112344455555665
Q ss_pred CCccEEEEEcccCCCcccC
Q 009375 444 ASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 444 ~~i~vipvSA~~GenI~e~ 462 (536)
+++++||++|.|+.++
T Consensus 152 ---~v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 152 ---DVYLTSSKDQDSLADI 167 (307)
T ss_dssp ---CEEECCHHHHTTCTTT
T ss_pred ---eEEEEecCCCCCHHHH
Confidence 6799999999998864
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.69 E-value=7.8e-05 Score=80.55 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.+.-.|+|+|..|+|||||++.|.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34567999999999999999999854
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.64 E-value=6.5e-05 Score=80.05 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCcccchhhHh------hhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~------~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.++.++||||||...+...+. ..+..++.++||+|+..+. ........+-..+++. -||+||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 567899999999654422222 2244689999999998651 1111111112233332 4799999
Q ss_pred ccc
Q 009375 416 DAV 418 (536)
Q Consensus 416 Dl~ 418 (536)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 975
No 236
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.59 E-value=2.3e-05 Score=77.98 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCCcccc-hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHH
Q 009375 351 SPGHKDF-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (536)
Q Consensus 351 TPGh~df-~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~ 429 (536)
-|||... ...+...+..+|++|+|+||..+..... .... ++ ++| .|+|+||+|++. ....
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~-----~~l~----ll---~k~-~iivlNK~DL~~--~~~~---- 64 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA-----YGVD----FS---RKE-TIILLNKVDIAD--EKTT---- 64 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC-----TTSC----CT---TSE-EEEEEECGGGSC--HHHH----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC-----hHHH----hc---CCC-cEEEEECccCCC--HHHH----
Confidence 4888654 3567788899999999999997632211 0111 11 555 899999999984 2222
Q ss_pred HHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 430 ~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+....+++..|+ ++ ++||++|.|+.+
T Consensus 65 ~~~~~~~~~~g~-----~v-~iSa~~~~gi~~ 90 (262)
T 3cnl_A 65 KKWVEFFKKQGK-----RV-ITTHKGEPRKVL 90 (262)
T ss_dssp HHHHHHHHHTTC-----CE-EECCTTSCHHHH
T ss_pred HHHHHHHHHcCC-----eE-EEECCCCcCHHH
Confidence 233344545554 56 999999999876
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.57 E-value=1.8e-05 Score=78.66 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
++|+|+|.+|+|||||+|+|++..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 689999999999999999999543
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.54 E-value=0.00025 Score=72.59 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.+...|+|+|..|+||||++..|.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999754
No 239
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.49 E-value=0.00018 Score=72.99 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+.-.|+|+|+.|+|||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999754
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.44 E-value=0.00092 Score=67.94 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+.-.|+|+|++|+||||++..|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3457899999999999999999754
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.43 E-value=0.0002 Score=72.44 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.-.|+|+|+.|+||||++..|.+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999743
No 242
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=97.42 E-value=4.5e-05 Score=51.65 Aligned_cols=29 Identities=21% Similarity=0.609 Sum_probs=25.6
Q ss_pred CCCceeecccccCCCCCccccccccCCCC
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
..|.|-|+.||+-|..+...|.+|.+.|.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCC
Confidence 45779999999999999999999999884
No 243
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.39 E-value=0.00022 Score=79.08 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|+|+.|||||||++.|++.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 3999999999999999999875
No 244
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.37 E-value=0.00014 Score=73.36 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=62.1
Q ss_pred CCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEec-ccccccchhHHH
Q 009375 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNK-MDAVQYSKDRFD 426 (536)
Q Consensus 352 PGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINK-iDl~~~~~e~~e 426 (536)
.|+..+...+..++..+|++|||||+++... ++ ......++..++.. .++| ++|+.|| -|+...- ...
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR---le-ak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Am--s~~ 267 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM--PCF 267 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCC---CC-HHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBC--CHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhH---HH-HHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCC--CHH
Confidence 5788899999999999999999999987532 11 11111222233321 3676 8899997 5776432 223
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009375 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
++.+.|.- .. +. ..+.+.++||++|+||.+
T Consensus 268 EI~e~L~L--~~--l~-r~W~Iq~csA~tGeGL~E 297 (312)
T 3l2o_B 268 YLAHELHL--NL--LN-HPWLVQDTEAETLTGFLN 297 (312)
T ss_dssp HHHHHTTG--GG--GC-SCEEEEEEETTTCTTHHH
T ss_pred HHHHHcCC--cc--CC-CcEEEEecccCCCcCHHH
Confidence 34443331 12 22 467899999999999986
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.25 E-value=0.00061 Score=72.38 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCcccch----hhH--hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHH-HHHHcCCCcEEEEEec
Q 009375 342 KNYHVVVLDSPGHKDFV----PNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFGVDQLIVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~----~~~--~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~-ll~~~~vp~vIVVINK 414 (536)
.++.++||||||..... ..+ +..+..+|.+|||+|+..+. .....+. +...+++ .-||+||
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq----------~av~~a~~f~~~l~i--~GVIlTK 246 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ----------EALSVARAFDEKVGV--TGLVLTK 246 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT----------HHHHHHHHHHHHTCC--CEEEEES
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH----------HHHHHHHHHHhcCCc--eEEEEeC
Confidence 56789999999954332 111 12233589999999997541 1111222 2223343 4678999
Q ss_pred cccc
Q 009375 415 MDAV 418 (536)
Q Consensus 415 iDl~ 418 (536)
+|..
T Consensus 247 lD~~ 250 (425)
T 2ffh_A 247 LDGD 250 (425)
T ss_dssp GGGC
T ss_pred cCCc
Confidence 9975
No 246
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.24 E-value=0.0012 Score=61.46 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC-----CCcEEEEEeccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-----VDQLIVAVNKMD 416 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~-----vp~vIVVINKiD 416 (536)
..+.++|||||+.. .......+..+|.+|+++..... - ......+..+..++ ++ +.+|+|+++
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--------~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~ 141 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--------D-FSAAGSVVTVLEAQAYSRKVE-ARFLITRKI 141 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--------T-HHHHHHHHHHHTTSCGGGCCE-EEEEECSBC
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--------H-HHHHHHHHHHHHHHHhCCCCc-EEEEEeccC
Confidence 35789999999865 33445566779999999988754 2 34555566666553 34 689999998
Q ss_pred cc
Q 009375 417 AV 418 (536)
Q Consensus 417 l~ 418 (536)
..
T Consensus 142 ~~ 143 (206)
T 4dzz_A 142 EM 143 (206)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 247
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.11 E-value=0.001 Score=71.06 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.8
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhc
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..+...|+|+|.+++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456678999999999999999999964
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.02 E-value=0.0011 Score=66.96 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+...|+|+|..|+||||++..|.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456888999999999999999754
No 249
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00048 Score=50.29 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=29.4
Q ss_pred CCCCCceeecccccCCCCCccccccccCCCCcc
Q 009375 45 TSKPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (536)
Q Consensus 45 ~~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (536)
....|.|.|+.|++.|......|-+|++.+..-
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs 38 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGT 38 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred CCCCCceECCeeeccCccCCceecCcCCCCCCC
Confidence 347789999999999999999999999998653
No 250
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0032 Score=63.73 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+.-.|+|+|+.|+|||||++.|.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999865
No 251
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.60 E-value=0.0061 Score=63.24 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=52.8
Q ss_pred hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCC
Q 009375 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (536)
Q Consensus 364 ~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~ 443 (536)
.+.++|.+++| ++..+.+. .......+..+...+++ +|||+||+|++. .+..+.+ +.+...++..|+
T Consensus 127 i~anvD~v~iv-~a~~P~~~------~~~i~r~L~~a~~~~~~-~iivlNK~DL~~--~~~~~~~-~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELS------LNIIDRYLVGCETLQVE-PLIVLNKIDLLD--DEGMDFV-NEQMDIYRNIGY-- 193 (358)
T ss_dssp EEECCCEEEEE-EESTTTCC------HHHHHHHHHHHHHHTCE-EEEEEECGGGCC--HHHHHHH-HHHHHHHHTTTC--
T ss_pred HHhcCCEEEEE-EeCCCCCC------HHHHHHHHHHHHhcCCC-EEEEEECccCCC--chhHHHH-HHHHHHHHhCCC--
Confidence 46779999976 45444221 12344444555667888 699999999984 2221122 233344556676
Q ss_pred CCccEEEEEcccCCCccc
Q 009375 444 ASLTWIPLSALENQNLVT 461 (536)
Q Consensus 444 ~~i~vipvSA~~GenI~e 461 (536)
+++++||.+|.|+.+
T Consensus 194 ---~v~~~Sa~~~~gl~~ 208 (358)
T 2rcn_A 194 ---RVLMVSSHTQDGLKP 208 (358)
T ss_dssp ---CEEECBTTTTBTHHH
T ss_pred ---cEEEEecCCCcCHHH
Confidence 679999999999876
No 252
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=96.57 E-value=0.00075 Score=45.93 Aligned_cols=29 Identities=21% Similarity=0.670 Sum_probs=25.1
Q ss_pred CCCceeecccccCCCCCccccccccCCCC
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
..|-|.|+.|++-|..+...|-+|.+.+.
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kp 32 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESAKP 32 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBC-
T ss_pred CCCceECCeeEeECccccCEEcccCCcCC
Confidence 46789999999999999999999999874
No 253
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=96.55 E-value=0.00037 Score=75.99 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=0.0
Q ss_pred ceeecccccCCCCCccccccccCCCCc
Q 009375 50 VWSCAICTYDNEEGMSVCDICGVLRTP 76 (536)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (536)
--+|+.|||-||++|..|||||+.-..
T Consensus 180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ---------------------------
T ss_pred CCCCCcccccCChhhhcccccCCcCCC
Confidence 367999999999999999999987644
No 254
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.53 E-value=0.011 Score=55.94 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=46.1
Q ss_pred CCeEEEEEeCCCc-ccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-CCCcEEEEEeccccc
Q 009375 342 KNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAV 418 (536)
Q Consensus 342 ~~~~i~LIDTPGh-~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~vp~vIVVINKiDl~ 418 (536)
..+.++|||||+. ... .+...+..+|.+|+++..... -.......+..+... +.+ +.+|+|+++..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~--------~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDAL--------ALDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHH--------HHHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCch--------hHHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 4578999999986 433 234456779999999987643 123455556666664 555 88999999865
No 255
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0057 Score=63.49 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+.-.|+|+|+.|+|||||++.|.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4557999999999999999999865
No 256
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.002 Score=47.06 Aligned_cols=31 Identities=19% Similarity=0.587 Sum_probs=28.4
Q ss_pred CCCceeecccccCCCCCccccccccCCCCcc
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (536)
..|.|-|+.|.+.|......|-+|++.|..-
T Consensus 8 ~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~ 38 (47)
T 2ebr_A 8 PEGSWDCELCLVQNKADSTKCLACESAKPGT 38 (47)
T ss_dssp CCSSCCCSSSCCCCCSSCSBCSSSCCBCCCC
T ss_pred CCCeeECCeeecCCcCCcceecCcCCCCCCC
Confidence 5688999999999999999999999999654
No 257
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.63 E-value=0.054 Score=54.11 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=49.8
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.+.++|||||....... ....+..+|.+|+|+.+... -.......+..+...+.+.+-+|+|++|..
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~--------~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN--------TLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTS--------BHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCC--------cHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 36799999999654432 23345669999999998754 235667777888888887677999999865
No 258
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.63 E-value=0.051 Score=54.15 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc----CCCcEEEEEecccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----~vp~vIVVINKiDl 417 (536)
..+.++|||||+..... .+...+..+|.+|+|+..... -.......+..+..+ +++.+-||+|+++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFD--------SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHH--------HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHH--------HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999854322 123456779999999987632 123444555555543 34423389999984
No 259
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=95.58 E-value=0.0039 Score=52.77 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=25.7
Q ss_pred CCCceeecccccCCCCCccccccccCCCC
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
.+|-|.|+.|++.|......|.+|++.|.
T Consensus 69 ~~g~W~C~~C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCcccCCcCcCCChhhcceecccCCCCC
Confidence 46789999999999999999999999984
No 260
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.18 E-value=0.0033 Score=63.92 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|++|+|||||+|+|++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47999999999999999999864
No 261
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.93 E-value=0.0029 Score=67.65 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..++.|+++|.+|+||||+..+|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999744
No 262
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.88 E-value=0.01 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+++|+|++|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.54 E-value=0.013 Score=54.00 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..|+|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999864
No 264
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.49 E-value=0.013 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..|+|+|+.|+|||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999864
No 265
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.48 E-value=0.018 Score=43.71 Aligned_cols=29 Identities=21% Similarity=0.566 Sum_probs=26.8
Q ss_pred CCCceeecccccCCCCCccccccccCCCC
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
..|.|-|..|..-|......|..|++.+.
T Consensus 28 ~~GsWeC~~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 28 PIGSWECSVCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CSSSCCCSSSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCeeeCCeeEccCccCCceeeEcCCcCC
Confidence 56889999999999999999999999874
No 266
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=94.47 E-value=0.0067 Score=51.31 Aligned_cols=31 Identities=26% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCCceeecccccCCCCCccccccccCCCCcc
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (536)
....|.|+.|+|.|..+...|.+|+..|...
T Consensus 6 ~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~ 36 (98)
T 3gj7_B 6 AGSSWQCDTCLLQNKVTDNKCIACQAAKLPL 36 (98)
T ss_dssp -------------------------------
T ss_pred CCCcccCCccccCChhhcccccccCCCCCCC
Confidence 3456999999999999999999999999654
No 267
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=94.30 E-value=0.015 Score=38.92 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=26.5
Q ss_pred CCCceeecccccCCCCCccccccccCCCC
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
.+|-|.|..|.+-|...-..|-.||+.|.
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~ 30 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKF 30 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTT
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCC
Confidence 35779999999999999999999999984
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.20 E-value=0.017 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.|+|+|+.|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458999999999999999998653
No 269
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.14 E-value=0.022 Score=53.55 Aligned_cols=26 Identities=42% Similarity=0.406 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+...|+|+|++|+|||||++.|.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999997653
No 270
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.11 E-value=0.072 Score=50.54 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
..+.++|||||+.... .....+..+|.+|+|+..... -.........++..++++.+.+|+||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLN--------SIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHH--------HHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHH--------HHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 5688999999985433 334556779999999988643 12344556667778888778999999983
No 271
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.08 E-value=0.018 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.|+|+|+.|||||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999998653
No 272
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.06 E-value=0.018 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.7
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|||||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998654
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.04 E-value=0.021 Score=52.32 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.|+|+|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999865
No 274
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.96 E-value=0.024 Score=53.88 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
++...|+|+|++|+|||||+++|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 445569999999999999999998654
No 275
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.79 E-value=0.022 Score=54.30 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 349999999999999999998643
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.76 E-value=0.03 Score=50.66 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
...|+|+|.+|+|||||++.|.+..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45799999999999999999976544
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.75 E-value=0.028 Score=52.55 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
...|+|+|+.|+|||||++.|.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998753
No 278
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.74 E-value=0.12 Score=48.81 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=48.1
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
..+.++|||+|+... ......+..+|.+|+|+..... -.......+..+...+.+.+.+|+|+++..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~--------~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEIS--------CLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHH--------HHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcc--------cHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 347899999998544 3445567789999999987632 123455566677777777678999999864
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.59 E-value=0.024 Score=51.05 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
..|+|+|.+|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999986544
No 280
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.54 E-value=0.031 Score=54.00 Aligned_cols=30 Identities=33% Similarity=0.564 Sum_probs=23.7
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
...+...|+|+|+.|||||||++.|.+..+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334456799999999999999999987544
No 281
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.50 E-value=0.03 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
++..|+|+|.+|+||||+...|....+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457799999999999999999975543
No 282
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.50 E-value=0.026 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|||||||++.|++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998654
No 283
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=93.47 E-value=0.046 Score=36.77 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=26.6
Q ss_pred CCCceeecccccCCCCCccccccccCCCC
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
.+|-|.|+.|-+-|...-..|-+|+..|.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~ 31 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKY 31 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTT
T ss_pred CCCCcccCCCCCccccccccccccCCcCC
Confidence 45679999999999999999999999984
No 284
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.43 E-value=0.13 Score=49.90 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=45.1
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEE-EEEecccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI-VAVNKMDA 417 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vI-VVINKiDl 417 (536)
..+.++|||||+...........+..+|.+|+|+...... .......+..++..+++ ++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~-~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT--------AVIVEKAINMAEETNTS-VLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC--------HHHHHHHHHHHHTTTCC-EEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch--------HHHHHHHHHHHHhCCCC-EEEEEECCCcc
Confidence 5678999999985443222222233589999999877542 23455666677777887 55 99999985
No 285
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.40 E-value=0.031 Score=49.72 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~ 292 (536)
+.|+|+|.+|+||||+.++| ...+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 46899999999999999999 54443
No 286
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.39 E-value=0.033 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
...|+|+|++|||||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3469999999999999999998654
No 287
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.37 E-value=0.028 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
.++|+|++|+|||||++.++.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 489999999999999998763
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.37 E-value=0.031 Score=52.09 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~ 292 (536)
...|+|+|.+|+|||||++.|.+..+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 457999999999999999999866544
No 289
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.32 E-value=0.033 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+...|+|+|.+|+|||||..+|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999986544
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.25 E-value=0.036 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
...|+|+|++|+|||||+++|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3469999999999999999998654
No 291
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.25 E-value=0.033 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|+.|||||||++.|.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4999999999999999999864
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.24 E-value=0.033 Score=50.68 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
...|+|.|.+|+||||+.+.|....+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999976443
No 293
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.23 E-value=0.034 Score=53.42 Aligned_cols=22 Identities=45% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 294
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.16 E-value=0.037 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
..|+|+|.+|+||||+.++|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999998544
No 295
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.11 E-value=0.037 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 359999999999999999998643
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.09 E-value=0.034 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=16.1
Q ss_pred eeEEEEEecCCCCchhhhhhhh-hcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLL-FLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl-~~~ 290 (536)
...|+|+|+.|||||||++.|. +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3469999999999999999998 653
No 297
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.06 E-value=0.035 Score=57.55 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|++|+|||||+|.|++..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 369999999999999999999654
No 298
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.05 E-value=0.22 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.9
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhh
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
..+...|+|+|..++|||+|+|.|+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHH
Confidence 34567888999999999999997763
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.03 E-value=0.037 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.|+|+|.+|+||||+.++|....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997553
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.99 E-value=0.041 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=20.1
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.92 E-value=0.04 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
...|+|+|++|||||||++.|....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998443
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.92 E-value=0.043 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.1
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
..|+|+|.+|+||||+.++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 303
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.89 E-value=0.041 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.+|+|+|.+|+||||+.+.|....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999986543
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.89 E-value=0.036 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
..|+|+|.+|+|||||.+.|....+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976544
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.88 E-value=0.041 Score=50.51 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|+|++|+|||||++.|...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5899999999999999999753
No 306
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.88 E-value=0.045 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+...|+|.|.+|+||||+.+.|....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999997544
No 307
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.86 E-value=0.041 Score=53.40 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999864
No 308
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.79 E-value=0.042 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 309
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.78 E-value=0.042 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998653
No 310
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.77 E-value=0.043 Score=53.46 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998653
No 311
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.72 E-value=0.053 Score=49.52 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+...|+|+|.+|+||||+.+.|....+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999975443
No 312
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.71 E-value=0.044 Score=53.82 Aligned_cols=24 Identities=38% Similarity=0.299 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998653
No 313
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.71 E-value=0.16 Score=48.99 Aligned_cols=66 Identities=15% Similarity=0.305 Sum_probs=46.9
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.+.++|||+|+... ......+..+|.+|+|+..... -.......+..+...+.+.+-+|+|+++..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~--------~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEIS--------SITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHH--------HHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChh--------HHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998544 3345566779999999987632 123455556666666777677999999864
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.67 E-value=0.038 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
...|+|+|++|||||||+++|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999998544
No 315
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.65 E-value=0.045 Score=53.47 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998653
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.63 E-value=0.052 Score=49.46 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+...|+|+|.+|+||||+.+.|....+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999975443
No 317
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.62 E-value=0.045 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 318
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.58 E-value=0.044 Score=52.53 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 319
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.57 E-value=0.045 Score=54.15 Aligned_cols=24 Identities=42% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 359999999999999999998643
No 320
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.56 E-value=0.047 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999865
No 321
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.52 E-value=0.048 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+|+|+|.+||||||+.++|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999975544
No 322
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.51 E-value=0.048 Score=54.32 Aligned_cols=24 Identities=38% Similarity=0.274 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
=.++|+|+.|||||||++.|.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 323
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.49 E-value=0.046 Score=51.33 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhhhhhhhhc
Q 009375 269 LAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~ 289 (536)
|+|+|++|+||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999854
No 324
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.47 E-value=0.049 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.247 Sum_probs=20.4
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999974
No 325
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.47 E-value=0.049 Score=53.64 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 469999999999999999998653
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.44 E-value=0.053 Score=50.89 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+|+|+|.+|+||||+..+|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999975544
No 327
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.42 E-value=0.049 Score=50.08 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.1
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.|+|+|.+|+||||+++.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999986544
No 328
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.39 E-value=0.051 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 35899999999999999999864
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.38 E-value=0.052 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
.+|+|+|.+|+|||||.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999986
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.33 E-value=0.07 Score=49.76 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=22.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.+...|+|+|.+|+|||||++.|....
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334679999999999999999998653
No 331
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.32 E-value=0.052 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.6
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998653
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.32 E-value=0.061 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+++..|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999865
No 333
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.31 E-value=0.053 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999865
No 334
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.28 E-value=0.051 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.6
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|++|+|||||++.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 58999999999999999998643
No 335
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.27 E-value=0.052 Score=49.22 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=18.0
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+...|+|+|.+|+||||+...|....+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345799999999999999999975443
No 336
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.26 E-value=0.12 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..+..|+|+|.+|+|||||..+|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999999843
No 337
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.25 E-value=0.052 Score=54.97 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
--.|+|+|++|+|||||++.|++.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 346999999999999999999864
No 338
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=92.23 E-value=0.049 Score=45.37 Aligned_cols=29 Identities=21% Similarity=0.666 Sum_probs=25.7
Q ss_pred CCCceeecccccCCCCCccccccccCCCC
Q 009375 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
.+|-|.|+.|++.|..+...|..|++.|.
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp 90 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACESAKP 90 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBCC
T ss_pred CCCcccCCcCCcCChhhcccccccCCCCC
Confidence 56889999999999999999999999884
No 339
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.23 E-value=0.053 Score=54.49 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLL 287 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl 287 (536)
..++|+|++|+|||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 340
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.22 E-value=0.055 Score=53.48 Aligned_cols=23 Identities=48% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
=.++|+|+.|+|||||++.|.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999874
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.21 E-value=0.055 Score=53.65 Aligned_cols=24 Identities=42% Similarity=0.385 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998653
No 342
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=92.20 E-value=0.026 Score=47.05 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=0.0
Q ss_pred CCceeecccccCCCCCccccccccCCCCc
Q 009375 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (536)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (536)
+|.|.|..|++.|..+...|.+|++.|..
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~ 34 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEKPG 34 (92)
T ss_dssp -----------------------------
T ss_pred CcCCCCCcCCCEeccccceecccCCCCCC
Confidence 57899999999999999999999999954
No 343
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.18 E-value=0.064 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+..+|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999765
No 344
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.17 E-value=0.056 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999998653
No 345
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.16 E-value=0.075 Score=49.35 Aligned_cols=25 Identities=32% Similarity=0.179 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+...|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999754
No 346
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.15 E-value=0.056 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.|+|+|+.|+|||||++.|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 45999999999999999999853
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.13 E-value=0.067 Score=54.17 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhc
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..+...|+|+|+.|+|||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345678999999999999999999764
No 348
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.12 E-value=0.065 Score=51.85 Aligned_cols=27 Identities=26% Similarity=0.089 Sum_probs=23.3
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
++++|+|+|.+||||||+..+|....+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999975443
No 349
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.11 E-value=0.058 Score=49.14 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
..+|+|+|.+|+||||+..+|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999975543
No 350
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.09 E-value=0.048 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|+|+.|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999864
No 351
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.09 E-value=0.058 Score=53.25 Aligned_cols=23 Identities=39% Similarity=0.348 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35999999999999999999865
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.07 E-value=0.065 Score=49.47 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+...|+|+|.+|+||||+++.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998654
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.07 E-value=0.061 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
+.|+|+|.+||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 354
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.05 E-value=0.063 Score=49.12 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+...|+|+|.+|+||||+...|....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999975543
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.03 E-value=0.065 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
..|+|+|.+|+||||+.++|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999976543
No 356
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.01 E-value=0.063 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..|+|+|..|+|||||+++|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999853
No 357
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.99 E-value=0.059 Score=52.83 Aligned_cols=22 Identities=45% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 358
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.99 E-value=0.056 Score=51.37 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=19.1
Q ss_pred eEEEEEecCCCCchhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLL 287 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl 287 (536)
-.++|+|++|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 358999999999999999987
No 359
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.93 E-value=0.062 Score=48.88 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+...|+|+|.+|+||||+..+|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999975443
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.93 E-value=0.06 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.++|+|++|+|||||+..|++
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999985
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.91 E-value=0.073 Score=49.57 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
...|+|+|.+|+|||||++.|.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999997543
No 362
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.90 E-value=0.069 Score=49.63 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+...|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999754
No 363
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.90 E-value=0.069 Score=51.76 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=23.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.+++.|+|.|.+|+||||+.+.|....+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4557899999999999999999976444
No 364
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.78 E-value=0.066 Score=50.49 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+.+.|+|+|.+|+||||+...|....+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999976544
No 365
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.75 E-value=0.075 Score=49.28 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.+++.|+|+|.+|+||||+...|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456899999999999999999975543
No 366
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.66 E-value=0.39 Score=48.29 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
-++|.|.+|+|||||+..|..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 488999999999999998874
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.63 E-value=0.04 Score=50.92 Aligned_cols=21 Identities=52% Similarity=0.688 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
.|+|+|..|+|||||++.|++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.62 E-value=0.075 Score=50.44 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.3
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
...|+|+|.+|+||||+.+.|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999975544
No 369
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.60 E-value=0.099 Score=48.38 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.+...|+|+|.+|+||||+...|....+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999976544
No 370
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.55 E-value=0.092 Score=48.03 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
++...|+|+|.+|+||||++..|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 44577999999999999999999744
No 371
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.49 E-value=0.062 Score=48.93 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
...++|+|++|+|||||+.+|.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999853
No 372
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.48 E-value=0.31 Score=46.17 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=47.0
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC--CCcEEEEEeccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~--vp~vIVVINKiDl~ 418 (536)
.+.++|||||+.... .....+..+|.+|+|+..... -.......+..+...+ .+.+.+|+|+++..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQ--------SLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHH--------HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHH--------HHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 477999999985432 344557779999999987632 2245566667777766 44588999999864
No 373
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.47 E-value=0.074 Score=52.54 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.41 E-value=0.096 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
...|+|+|.+|+||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975543
No 375
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.37 E-value=0.079 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999865
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.31 E-value=0.083 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=22.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+...|+|+|+.|+|||||++.|....+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346799999999999999999985443
No 377
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.30 E-value=0.11 Score=49.62 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.+...|+|+|..|+|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999876
No 378
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.28 E-value=0.053 Score=54.88 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
--.|+|+|+.|+|||||++.|++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 346999999999999999999864
No 379
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.27 E-value=0.097 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
...++|+|..|||||||++.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456889999999999999999864
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.07 E-value=0.1 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.144 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.+...|+|+|.+|+|||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988654
No 381
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.07 E-value=0.095 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCCchhhhhhhhh
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
++.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 382
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.06 E-value=1.8 Score=44.14 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=49.5
Q ss_pred CCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc----chhHHHHHHHHHHHHHHHcCCCC
Q 009375 368 SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY----SKDRFDSIKVQLGTFLRSCGFKD 443 (536)
Q Consensus 368 aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~----~~e~~eei~~~L~~~l~~~g~~~ 443 (536)
.+.+|+|.-...- .....+..+..++..+++-.-+|+|++..... ...+.+.....+..+.+.++.
T Consensus 237 ~~~~vlV~~p~~~--------~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-- 306 (349)
T 3ug7_A 237 RTAFRLVVIPEEM--------SILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGD-- 306 (349)
T ss_dssp TEEEEEEECSSHH--------HHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTT--
T ss_pred CceEEEEECCCcc--------HHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCC--
Confidence 3678888766532 34577788888999999966789999975421 122333334455555555543
Q ss_pred CCccEEEEEcccCCCcc
Q 009375 444 ASLTWIPLSALENQNLV 460 (536)
Q Consensus 444 ~~i~vipvSA~~GenI~ 460 (536)
..+-.+|.....-.|+.
T Consensus 307 ~~l~~iPl~~~e~~g~~ 323 (349)
T 3ug7_A 307 KVIAYVPLLRTEAKGIE 323 (349)
T ss_dssp SEEEEEECCSSCSCSHH
T ss_pred CcEEEecCCCCCCCCHH
Confidence 23344566555445553
No 383
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.05 E-value=0.077 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.|+|+|+.|+|||||++.|++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.04 E-value=0.099 Score=53.27 Aligned_cols=27 Identities=37% Similarity=0.330 Sum_probs=23.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhc
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..+++.|+|+|++|+|||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999998654
No 385
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.02 E-value=0.094 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.9
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.++|+|++|+|||||++.|.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999984
No 386
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.02 E-value=0.092 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCCchhhhhhhhh
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
...|+|+|..|+|||||+.+|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999984
No 387
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.02 E-value=0.11 Score=51.78 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=22.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+++..|+|+|.+|||||||..+|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345779999999999999999997543
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.01 E-value=0.099 Score=52.51 Aligned_cols=27 Identities=37% Similarity=0.379 Sum_probs=22.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.+...|+|+|+.|+|||||++.|.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344679999999999999999998643
No 389
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.98 E-value=0.1 Score=48.64 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+...|+|+|..|+|||||++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 390
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.97 E-value=0.086 Score=48.33 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
...|+|+|.+|+||||+...|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976544
No 391
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.91 E-value=1.8 Score=43.50 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=47.6
Q ss_pred CeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc----cchhHHHHHHHHHHHHHHHcCCCCC
Q 009375 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ----YSKDRFDSIKVQLGTFLRSCGFKDA 444 (536)
Q Consensus 369 D~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~----~~~e~~eei~~~L~~~l~~~g~~~~ 444 (536)
+.+|+|+-...- .....+..+..++..+++..-+|+|++.... +-..+.+.....+..+.+.++. .
T Consensus 223 ~~~vlV~~p~~~--------~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~--~ 292 (324)
T 3zq6_A 223 TSFKMVVIPEEM--------SIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSD--K 292 (324)
T ss_dssp EEEEEEECSSHH--------HHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTT--S
T ss_pred CeEEEEeCCccc--------HHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCC--C
Confidence 478888766532 3457778888899999996678999987542 1122333333444444444432 2
Q ss_pred CccEEEEEcccCCCcc
Q 009375 445 SLTWIPLSALENQNLV 460 (536)
Q Consensus 445 ~i~vipvSA~~GenI~ 460 (536)
.+..+|.-...=.|+.
T Consensus 293 ~~~~iPl~~~e~~g~~ 308 (324)
T 3zq6_A 293 VVAEVPLLKKEAKGIE 308 (324)
T ss_dssp EEEEEECCSSCSCSHH
T ss_pred cEEEecCCCCCCCCHH
Confidence 2334555444444543
No 392
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.91 E-value=0.31 Score=49.98 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-++|.|++|+|||||+..|...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3889999999999999988643
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.88 E-value=0.093 Score=49.29 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.0
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999976543
No 394
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.85 E-value=0.075 Score=54.61 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.3
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.-+++|+|+.|+|||||++.|.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999986543
No 395
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.80 E-value=0.078 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.|+|+|+.|+|||||++.|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999999854
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.76 E-value=0.082 Score=49.93 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
..|+|+|.+|+||||+..+|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999976554
No 397
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.67 E-value=0.099 Score=46.69 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.9
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999976443
No 398
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.64 E-value=0.084 Score=47.83 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+|+|+|.+|+||||+..+|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999976544
No 399
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=90.60 E-value=0.19 Score=36.26 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=27.4
Q ss_pred CCCceeec--ccccCCCCCccccccccCCCCc
Q 009375 47 KPRVWSCA--ICTYDNEEGMSVCDICGVLRTP 76 (536)
Q Consensus 47 ~~~~w~c~--~c~~~n~~~~~~c~~c~~~r~~ 76 (536)
.+|-|.|. .|.+-|...-..|-.|++.|..
T Consensus 11 ~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~ 42 (45)
T 1n0z_A 11 SDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42 (45)
T ss_dssp CSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred CCCCcCCCCCCCCCEEccccccccccCCcCCC
Confidence 67889999 8999999999999999999943
No 400
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.42 E-value=0.097 Score=50.83 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=22.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++..|+|+|.+|+|||||...|....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999997554
No 401
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.42 E-value=0.1 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|+|+.|+|||||++.|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999854
No 402
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.37 E-value=0.11 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 403
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.35 E-value=0.11 Score=49.36 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~ 292 (536)
++|+|+|+|||||+|+..+|....+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 36899999999999999999866543
No 404
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.34 E-value=0.061 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|+|.+|+|||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999744
No 405
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.11 E-value=0.89 Score=43.77 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=40.8
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc------CCCcE-EEEEec
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVDQL-IVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~------~vp~v-IVVINK 414 (536)
..+.++|||||+..... ....+..+|.+|+|+...... .......+..+..+ +++ + -+|+|+
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~-~~gvv~N~ 178 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYA--------LEGVAGLLATLEEVRAGLNPRLR-LLGILVTM 178 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHH--------HHHHHHHHHHHHHHHHHTCTTCE-EEEEEEES
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHH--------HHHHHHHHHHHHHHHHHhCCCce-EEEEEEEe
Confidence 56789999999864432 334556799999999987431 12222333333321 344 4 489999
Q ss_pred cccc
Q 009375 415 MDAV 418 (536)
Q Consensus 415 iDl~ 418 (536)
.+..
T Consensus 179 ~~~~ 182 (257)
T 1wcv_1 179 YDGR 182 (257)
T ss_dssp BCTT
T ss_pred ECCC
Confidence 9864
No 406
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.10 E-value=0.11 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.|+|+|++|+|||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999853
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.08 E-value=0.12 Score=50.34 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=22.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
++++.|+|+|++|+|||||.+.|....+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999975544
No 408
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.06 E-value=0.12 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|||||||++.|.+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 35999999999999999999864
No 409
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.04 E-value=0.78 Score=44.25 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCC-cEEEEEecccc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDA 417 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp-~vIVVINKiDl 417 (536)
..+.++|||||+.... .....+..+|.+|+|+..... -.......+..+..++.. ++.+|+|++..
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKW--------AVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTT--------HHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChH--------HHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 4578999999985432 344556679999999988643 123445556666666431 37899999953
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.03 E-value=0.13 Score=48.57 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.++|+|+|.+|+||||+..+|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975544
No 411
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.03 E-value=0.11 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999998653
No 412
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.98 E-value=0.3 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.+.|.|++|+|||||+..|+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998873
No 413
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.98 E-value=0.14 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
...|+|+|.+|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999753
No 414
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.91 E-value=0.13 Score=47.10 Aligned_cols=22 Identities=32% Similarity=0.173 Sum_probs=19.9
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|.|.+|+||||++++|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 415
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.87 E-value=0.16 Score=48.85 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=22.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~ 292 (536)
.+...|+|+|+|||||+|+..+|....+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 34455778999999999999999865543
No 416
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.86 E-value=0.13 Score=46.80 Aligned_cols=23 Identities=48% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
..+|+|+.|+|||||+.+|....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
No 417
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.75 E-value=0.12 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999998653
No 418
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.75 E-value=0.65 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.+.|+|++|+|||||+..|...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999998743
No 419
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.73 E-value=0.37 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
.+.|.|++|+|||||+-.|+.
T Consensus 76 li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 477899999999999998873
No 420
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.66 E-value=0.14 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
...|+|+|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 421
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.66 E-value=0.12 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..+|+|+|++|||||||+++|++.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345999999999999999999853
No 422
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.58 E-value=0.13 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 48999999999999999998653
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.53 E-value=0.14 Score=45.93 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
-+|+|+|.+|+||||+...|....+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999975544
No 424
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.42 E-value=0.13 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999998653
No 425
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.42 E-value=0.11 Score=47.17 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+|+|+|.+|+||||+...|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999975543
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.42 E-value=0.15 Score=48.67 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+..+|+|+|.+|+||||+..+|....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999976544
No 427
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.36 E-value=0.13 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48999999999999999998653
No 428
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.31 E-value=0.13 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=20.6
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 48999999999999999998653
No 429
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.26 E-value=0.18 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhh
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLL 287 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl 287 (536)
.+++.|+|+|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999997
No 430
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.20 E-value=0.14 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
=.++|+|+.|+|||||++.|.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 358999999999999999998653
No 431
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.09 E-value=0.16 Score=48.50 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=24.0
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
++.+...|+|+|.+|+||||+...|....+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345667899999999999999999986544
No 432
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.08 E-value=0.15 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.8
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975443
No 433
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.05 E-value=0.17 Score=46.73 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.|+|.|.+|+||||+...|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999976544
No 434
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.94 E-value=0.16 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.8
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.|+|+|.+|+|||||..+|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 589999999999999999976543
No 435
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.92 E-value=0.16 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.089 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.|+|+|+.|+|||||++.|++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999854
No 436
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.90 E-value=0.15 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|++|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999843
No 437
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.89 E-value=0.32 Score=50.14 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.+.|.|.+|+|||||+..|+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998874
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.86 E-value=0.15 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.|+|+|.+|+||||+...|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999976543
No 439
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=88.85 E-value=0.1 Score=41.58 Aligned_cols=26 Identities=38% Similarity=0.915 Sum_probs=20.3
Q ss_pred ceeecccccCCCC---------CccccccccCCCC
Q 009375 50 VWSCAICTYDNEE---------GMSVCDICGVLRT 75 (536)
Q Consensus 50 ~w~c~~c~~~n~~---------~~~~c~~c~~~r~ 75 (536)
-|.|+||.|-|.. .+-.|..||+.+.
T Consensus 17 tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 4999999977754 4556999998774
No 440
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.83 E-value=0.15 Score=50.33 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhhhhhhhhcc
Q 009375 269 LAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~ 290 (536)
|+|+|++|+|||||+++|.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999998654
No 441
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.66 E-value=0.53 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.+.|.|++|+|||||+..|..
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHH
Confidence 3588999999999999999874
No 442
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.63 E-value=0.5 Score=46.50 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=46.5
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.+.++|||||+...... ....+..+|.+|+|+.+... -.......+..+...+.+.+-+|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~--------~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENN--------NKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSC--------CHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCC--------cHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 36799999999644322 22234568999999998754 235666777777777887334899999864
No 443
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.61 E-value=0.29 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
.+.|.|++|+|||+|..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999974
No 444
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.52 E-value=0.17 Score=60.87 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.+-=+|+|||+.|+|||||++.|++-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34457999999999999999999853
No 445
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.37 E-value=0.12 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|+.|+|||||++.|.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48999999999999999998653
No 446
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.30 E-value=0.21 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCCchhhhhhhhh
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
...|+|.|++|+|||+|+.+|..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999974
No 447
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.26 E-value=0.76 Score=45.85 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=47.7
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.+.++|||||+...... .......+|.+|+|+..... ........+..+...+++.+-+|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~--------~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN--------TAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS--------CTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC--------hHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 36799999999654322 22234669999999988754 235666777778888877455889999865
No 448
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.25 E-value=0.18 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.9
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|+|++|+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999854
No 449
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.22 E-value=0.21 Score=46.74 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..+..|+|+|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999999765
No 450
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.21 E-value=0.2 Score=52.46 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
=.++|+|+.|+|||||++.|.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 349999999999999999998643
No 451
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=88.16 E-value=0.21 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhh
Q 009375 263 RMTQLNLAIVGHVDSGKSTLSGRL 286 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrL 286 (536)
..+.++|+|+|..++|||||+..|
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 356789999999999999999987
No 452
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.09 E-value=0.19 Score=49.64 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.7
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|++|+|||||+..|.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.04 E-value=0.17 Score=47.29 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
+++.|+|+|.+|+||||+...|....+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346799999999999999999976544
No 454
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.17 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.|+|+|+.|+|||||++.|++..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 349999999999999999998653
No 455
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.91 E-value=0.23 Score=46.43 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
...|+|+|.+|+||||++..|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999754
No 456
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.70 E-value=0.49 Score=45.17 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=44.1
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC--------CcEEEEEec
Q 009375 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--------DQLIVAVNK 414 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v--------p~vIVVINK 414 (536)
.+.++|||||+... ......+..+|.+|+|+..... -.......+..+...+. ..+.+|+|+
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~ 182 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVS--------SVRDSDRILGILASKSRRAENGEEPIKEHLLLTR 182 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHH--------HHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChh--------HHHHHHHHHHHHHHhccccccccCCcceEEEEec
Confidence 68899999998543 2445566789999999987632 12334444455544431 347899999
Q ss_pred cccc
Q 009375 415 MDAV 418 (536)
Q Consensus 415 iDl~ 418 (536)
++..
T Consensus 183 ~~~~ 186 (260)
T 3q9l_A 183 YNPG 186 (260)
T ss_dssp ECHH
T ss_pred CCcc
Confidence 9853
No 457
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.69 E-value=0.22 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
=+++|+|+.|+|||||++.|++..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998653
No 458
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.60 E-value=0.11 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999865
No 459
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.58 E-value=0.18 Score=49.42 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~ 292 (536)
..+|+|+|.+|+|||||.+.|....+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 456999999999999999999765443
No 460
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.51 E-value=0.21 Score=49.86 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=19.1
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+.+.|+|.|.+||||||+.+.|....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999997643
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.45 E-value=0.25 Score=54.40 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=22.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.+--.++|+|+.|+|||||++.|++..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 344569999999999999999998643
No 462
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.36 E-value=0.28 Score=47.02 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.3
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+...|+|.|.+|+||||++++|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999998654
No 463
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.29 E-value=0.23 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
=.++|+|+.|+|||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998753
No 464
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.21 E-value=0.24 Score=54.35 Aligned_cols=25 Identities=44% Similarity=0.401 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
--.++|+|+.|+|||||++.|.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3469999999999999999998653
No 465
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.18 E-value=0.24 Score=48.17 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.+...|+|.|..|+||||+++.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 445789999999999999999997654
No 466
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.10 E-value=0.92 Score=47.76 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
-++|.|++|+|||||+..|..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 488999999999999998874
No 467
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.07 E-value=0.24 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
--.++|+|+.|+|||||++.|.+.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 346999999999999999999864
No 468
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.03 E-value=1.5 Score=44.78 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.0
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLL 287 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl 287 (536)
.+.|.|++|+|||||+-.++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999988876
No 469
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.02 E-value=0.23 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.|+|+|++|+|||||+++|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 39999999999999999998643
No 470
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.97 E-value=1 Score=45.02 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.+.|.|++|+|||+|+..|..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999874
No 471
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.84 E-value=0.25 Score=45.86 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
.++|+|++|+|||||+..|+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 472
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.83 E-value=1.9 Score=47.02 Aligned_cols=157 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred cCCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe
Q 009375 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (536)
Q Consensus 260 ~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~ 339 (536)
.........+++.|..|+||||+.-.|. ......|+.......-. .......-|+........+
T Consensus 2 ~~~~~~~~i~~~sgkGGvGKTT~a~~lA---------------~~lA~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v 65 (589)
T 1ihu_A 2 QFLQNIPPYLFFTGKGGVGKTSISCATA---------------IRLAEQGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAI 65 (589)
T ss_dssp GGGSSCCSEEEEECSTTSSHHHHHHHHH---------------HHHHHTTCCEEEEECCT-TCCHHHHTTSCCCSSCEEC
T ss_pred CCCCCCCEEEEEeCCCcCHHHHHHHHHH---------------HHHHHCCCcEEEEECCC-CcCHHHHhCCcccCCCcee
Q ss_pred e------------------------------------------------------------------cCCeEEEEEeCCC
Q 009375 340 D------------------------------------------------------------------SKNYHVVVLDSPG 353 (536)
Q Consensus 340 ~------------------------------------------------------------------~~~~~i~LIDTPG 353 (536)
. ...+.++|||||+
T Consensus 66 ~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P 145 (589)
T 1ihu_A 66 ASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAP 145 (589)
T ss_dssp TTSTTEEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCC
T ss_pred ccchhhhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCC
Q ss_pred cccchhhHh--------------------------------------hhcccCCeEEEEeecCCCcccccccchhhHHHH
Q 009375 354 HKDFVPNMI--------------------------------------SGATQSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (536)
Q Consensus 354 h~df~~~~~--------------------------------------~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e 395 (536)
.......+. ..-...+.+|+|+..... ....+..
T Consensus 146 ~~~~lrll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~--------~~~~~~~ 217 (589)
T 1ihu_A 146 TGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKS--------TLQEVAR 217 (589)
T ss_dssp CHHHHHHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHH--------HHHHHHH
T ss_pred chhHHHHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCcc--------HHHHHHH
Q ss_pred HHHHHHHcCCCcEEEEEeccccccc--chhHHHHHHHHHHHHHHHcC
Q 009375 396 HAQLIRSFGVDQLIVAVNKMDAVQY--SKDRFDSIKVQLGTFLRSCG 440 (536)
Q Consensus 396 ~l~ll~~~~vp~vIVVINKiDl~~~--~~e~~eei~~~L~~~l~~~g 440 (536)
.+..+...+++..-||+|++..... .....+......+.++..+.
T Consensus 218 ~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (589)
T 1ihu_A 218 THLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLP 264 (589)
T ss_dssp HHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHH
No 473
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.83 E-value=0.96 Score=47.89 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
-++|.|++|+|||||+-.|..
T Consensus 199 liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHH
Confidence 488999999999999988874
No 474
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.81 E-value=4.3 Score=41.67 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.+.|+|++|+|||||+..|+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999983
No 475
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.81 E-value=0.26 Score=44.09 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009375 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.+|+|+.|+|||||+.+|..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999974
No 476
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.77 E-value=0.27 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..|+|+|.+|+||||+.++|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999853
No 477
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.70 E-value=0.23 Score=54.34 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
--.++|+|+.|+|||||++.|.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3469999999999999999998643
No 478
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.58 E-value=0.26 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
-.++|+|++|+|||||+..|+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999985
No 479
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.51 E-value=0.25 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|++|+|||||++.|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 348999999999999999998765
No 480
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.50 E-value=0.26 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358999999999999999998753
No 481
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=86.39 E-value=0.51 Score=34.63 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=28.6
Q ss_pred ceeecccccCCCCCccccccccCCCCccccCC
Q 009375 50 VWSCAICTYDNEEGMSVCDICGVLRTPLVNNN 81 (536)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~r~~~~~~~ 81 (536)
.|+|.-|.--|...+..|..|-.+|.-.+.-.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~ 42 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWALRKDWYSDC 42 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCCBCCCCCCCC
T ss_pred eeecccccccCCCccchhHHHHHhhcccCCCc
Confidence 69999999999999999999999998765543
No 482
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.33 E-value=0.26 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009375 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+--.++|+|+.|+|||||++.|.+.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446999999999999999999864
No 483
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.24 E-value=0.27 Score=59.17 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=22.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009375 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.+--.++|||++|+|||||++.|++..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 344569999999999999999998653
No 484
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.21 E-value=0.28 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-.++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999864
No 485
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.99 E-value=0.89 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.086 Sum_probs=18.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.-+++.|.+|+||||++-.++..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 45778999999999988777643
No 486
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=85.98 E-value=2.8 Score=42.82 Aligned_cols=42 Identities=19% Similarity=0.057 Sum_probs=30.8
Q ss_pred CeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009375 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 369 D~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
+.+|+|+-...- ....+...+..+..++++..-+|+|++...
T Consensus 232 t~~vlVt~pe~~--------~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFL--------SLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHH--------HHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCcc--------HHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 467777765532 235677788888899998778999998753
No 487
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.75 E-value=0.28 Score=53.83 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
--.++|+|+.|+|||||++.|.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3469999999999999999998643
No 488
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=85.74 E-value=0.36 Score=34.72 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=27.8
Q ss_pred CceeecccccCCCCCccccccccCCCCcccc
Q 009375 49 RVWSCAICTYDNEEGMSVCDICGVLRTPLVN 79 (536)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r~~~~~ 79 (536)
..|+|.-|.--|++....|..|-.+|...+.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~Wlp 42 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRENWLP 42 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSSCSC
T ss_pred ceEecccccccCCCccchhhHHHhhccccCC
Confidence 3599999999999999999999999987554
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.70 E-value=0.3 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
=.++|+|+.|+|||||++.|.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999998754
No 490
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.69 E-value=0.27 Score=43.86 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCCchhhhhhhhh
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
...|+|.|++|+|||+|+.+|..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999974
No 491
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.68 E-value=0.34 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.1
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~ 288 (536)
..|.|.|++|+|||+|+.+|..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999874
No 492
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.64 E-value=0.31 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.153 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-.++|+|+.|+|||||++.|.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 359999999999999999998753
No 493
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.64 E-value=0.34 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
...|+|.|++|+|||||+.+|...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999743
No 494
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.58 E-value=2.5 Score=42.33 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCCchhhhhhhhh
Q 009375 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
...|.|.|++|+|||+|+.+|..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 45799999999999999999984
No 495
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.58 E-value=0.3 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.6
Q ss_pred EEEEecCCCCchhhhhhhhhc
Q 009375 269 LAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~ 289 (536)
++|+|+.|||||||+++|...
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999744
No 496
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=85.38 E-value=1.5 Score=42.96 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEEecc
Q 009375 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVINKi 415 (536)
..+.++|||||+..... ....+..+|.+|+++.+.... .......+..+.. .+++.+-+|+|++
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEES--------TNNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCC--------HHHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHH--------HHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 35789999999865432 233444699999999887542 1223333333333 2444245899999
Q ss_pred ccc
Q 009375 416 DAV 418 (536)
Q Consensus 416 Dl~ 418 (536)
|..
T Consensus 223 ~~~ 225 (298)
T 2oze_A 223 DTD 225 (298)
T ss_dssp CTT
T ss_pred CCC
Confidence 864
No 497
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=85.37 E-value=0.34 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.6
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009375 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+++|+|+.|+|||||++.|.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 59999999999999999998653
No 498
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.36 E-value=0.37 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..|+|+|++|+|||||+.+|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999999854
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.35 E-value=0.33 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009375 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
=.++|+|+.|+|||||++.|.+.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 500
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=85.18 E-value=2.5 Score=36.53 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=30.4
Q ss_pred hhhHHHHHHhcC------CCCCCCCCCeeEEEEEEEEeCCCeEEEEEEEEeeEEecCCEEEEecCC
Q 009375 474 GPCLLDAIDSLR------PPPREFSKPLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 474 g~tLle~L~~l~------~~~~~~~~P~~~~I~d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
|..|++.|..-. ..-.....|..|.|..++..-.|.+ +.|+|++|+|++|+.| |.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~k~~ilp~~~~vFgpv-ivGrVe~G~LK~G~~V---Pg~ 69 (116)
T 1xe1_A 8 GSGLFDFLKRKEVKEEEKIEILSKKPAGKVVVEEVVNIMGKDV-IIGTVESGMIGVGFKV---KGP 69 (116)
T ss_dssp ------------------CCCCCSSCSEEEEEEEEEEETTEEE-EEEEEEEEEEETTCEE---ECS
T ss_pred cchhhhhhcCccccccceeEeEEecCcEEEEEEecCCeEECCe-eEEEEeEEEEcCCCCc---CCC
Confidence 445777774321 1112235677777777444334666 7899999999999998 765
Done!