BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009376
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DBY|A Chain A, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|B Chain B, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|C Chain C, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|D Chain D, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|E Chain E, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|F Chain F, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|G Chain G, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|H Chain H, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|I Chain I, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|J Chain J, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|K Chain K, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|L Chain L, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|M Chain M, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|N Chain N, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|O Chain O, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|P Chain P, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|Q Chain Q, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|R Chain R, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|S Chain S, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|T Chain T, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
Length = 269
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 276 IIDFQIGQGSQWITLIQAFAARPGGPP-----HIRITGIDDSIS-AYARGGGLGIVGKRL 329
I+ + + ++I +++ F + PP H + + D+ A + GGL +V KRL
Sbjct: 101 FINHMVNEVEEYIAVLE-FLKKGEVPPVFHELHYHLVWLTDAAGHAGSISGGLDLVEKRL 159
Query: 330 SKLAEQFKVPFE---FHAANMSGY 350
+ +E+F FE A M+GY
Sbjct: 160 KEKSEEFTKHFEQFYLKAVEMTGY 183
>pdb|1WXR|A Chain A, Crystal Structure Of Heme Binding Protein, An
Autotransporter Hemoglobine Protease From Pathogenic
Escherichia Coli
Length = 1048
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 245 ILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHI 304
++ EV P ++A GA+A A D++R + +++G G+Q+I + GG
Sbjct: 110 LVTEVAPT----AVTAQGAVAGAYLDKERYPVF-YRLGSGTQYIKDSNGQLTKMGGAYSW 164
Query: 305 RITGIDDSISAYARG 319
G S+S+Y G
Sbjct: 165 LTGGTVGSLSSYQNG 179
>pdb|3AK5|A Chain A, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|B Chain B, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|C Chain C, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|D Chain D, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
Length = 975
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 245 ILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHI 304
++ EV P ++A GA+A A D++R + +++G G+Q+I + GG
Sbjct: 110 LVTEVAPT----AVTAQGAVAGAYLDKERYPVF-YRLGSGTQYIKDSNGQLTKMGGAYSW 164
Query: 305 RITGIDDSISAYARG 319
G S+S+Y G
Sbjct: 165 LTGGTVGSLSSYQNG 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,428,437
Number of Sequences: 62578
Number of extensions: 675012
Number of successful extensions: 1737
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1737
Number of HSP's gapped (non-prelim): 6
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)