Query 009376
Match_columns 536
No_of_seqs 199 out of 688
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 12:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 9E-115 2E-119 912.0 38.1 369 166-536 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.7 0.051 1.1E-06 54.5 15.0 190 247-490 33-226 (247)
3 TIGR02752 MenG_heptapren 2-hep 95.6 0.8 1.7E-05 44.7 16.9 113 262-405 35-149 (231)
4 TIGR00740 methyltransferase, p 95.1 1 2.3E-05 44.5 16.1 106 272-405 53-159 (239)
5 TIGR02716 C20_methyl_CrtF C-20 94.7 0.95 2.1E-05 46.6 14.9 119 261-410 138-258 (306)
6 PRK06202 hypothetical protein; 92.6 2.1 4.5E-05 42.2 12.5 109 269-405 57-165 (232)
7 PLN02233 ubiquinone biosynthes 91.9 6.7 0.00015 39.8 15.6 132 262-421 63-195 (261)
8 PRK14103 trans-aconitate 2-met 91.7 1.7 3.7E-05 43.5 11.0 106 263-406 20-125 (255)
9 TIGR01934 MenG_MenH_UbiE ubiqu 91.7 12 0.00026 35.6 16.4 114 262-407 29-144 (223)
10 PLN02336 phosphoethanolamine N 91.5 7.5 0.00016 42.5 16.6 114 261-406 255-368 (475)
11 PF13489 Methyltransf_23: Meth 91.5 1.1 2.3E-05 40.5 8.4 93 270-405 20-113 (161)
12 TIGR00477 tehB tellurite resis 91.3 2.6 5.5E-05 40.8 11.4 111 259-402 17-128 (195)
13 PF13847 Methyltransf_31: Meth 91.2 2.2 4.7E-05 39.1 10.3 106 272-406 3-109 (152)
14 PF13649 Methyltransf_25: Meth 90.7 0.47 1E-05 40.4 5.1 97 276-399 1-99 (101)
15 PRK08317 hypothetical protein; 90.3 16 0.00034 35.0 15.9 112 264-405 11-122 (241)
16 COG2226 UbiE Methylase involve 89.9 14 0.0003 37.7 15.5 190 249-491 27-221 (238)
17 PTZ00098 phosphoethanolamine N 89.0 13 0.00029 37.7 14.8 118 256-405 36-154 (263)
18 TIGR02072 BioC biotin biosynth 88.6 15 0.00033 35.2 14.3 100 272-406 34-134 (240)
19 PLN02396 hexaprenyldihydroxybe 88.4 4.8 0.0001 42.6 11.4 99 274-406 133-234 (322)
20 smart00138 MeTrc Methyltransfe 88.0 1 2.2E-05 46.0 5.9 45 270-314 97-143 (264)
21 PF01209 Ubie_methyltran: ubiE 87.9 1.7 3.6E-05 43.7 7.4 115 263-406 38-153 (233)
22 PRK00216 ubiE ubiquinone/menaq 86.8 31 0.00066 33.2 17.0 44 264-313 43-86 (239)
23 PRK05785 hypothetical protein; 86.7 15 0.00033 36.5 13.3 93 273-406 52-145 (226)
24 TIGR03587 Pse_Me-ase pseudamin 86.3 8 0.00017 37.9 11.0 100 275-409 46-145 (204)
25 PF09243 Rsm22: Mitochondrial 86.3 1.7 3.7E-05 44.6 6.5 137 256-424 13-156 (274)
26 PRK12335 tellurite resistance 85.6 11 0.00024 38.6 12.0 109 262-403 110-219 (287)
27 TIGR02081 metW methionine bios 85.2 14 0.00029 35.4 11.8 41 263-313 6-46 (194)
28 PRK11207 tellurite resistance 84.0 17 0.00037 35.1 12.0 113 259-404 17-131 (197)
29 PRK01683 trans-aconitate 2-met 80.5 20 0.00043 35.7 11.3 112 260-407 19-130 (258)
30 PLN02244 tocopherol O-methyltr 79.8 29 0.00063 36.7 12.8 98 273-403 119-219 (340)
31 PLN02336 phosphoethanolamine N 79.5 15 0.00032 40.2 10.8 114 262-406 27-141 (475)
32 TIGR03438 probable methyltrans 78.8 19 0.00041 37.3 10.9 118 263-406 56-176 (301)
33 PF12847 Methyltransf_18: Meth 78.4 3.8 8.3E-05 34.8 4.8 106 275-406 4-110 (112)
34 PRK11036 putative S-adenosyl-L 78.1 19 0.00042 36.0 10.4 112 263-405 36-147 (255)
35 PRK05134 bifunctional 3-demeth 77.1 72 0.0016 31.1 13.9 103 271-406 47-150 (233)
36 COG2227 UbiG 2-polyprenyl-3-me 75.7 7.9 0.00017 39.6 6.8 100 272-405 59-159 (243)
37 PF08242 Methyltransf_12: Meth 74.8 1.3 2.7E-05 37.4 0.7 32 277-315 1-32 (99)
38 TIGR02021 BchM-ChlM magnesium 74.6 36 0.00079 33.0 11.0 49 256-313 37-87 (219)
39 PLN02585 magnesium protoporphy 74.4 21 0.00046 37.7 9.8 103 272-405 144-248 (315)
40 PF08241 Methyltransf_11: Meth 72.7 16 0.00035 29.4 6.9 93 277-404 1-94 (95)
41 PRK15068 tRNA mo(5)U34 methylt 71.9 56 0.0012 34.4 12.3 111 264-406 114-225 (322)
42 PF13679 Methyltransf_32: Meth 67.3 22 0.00049 32.5 7.3 43 268-313 21-63 (141)
43 PRK10258 biotin biosynthesis p 66.6 93 0.002 30.8 12.1 44 261-313 31-74 (251)
44 COG2242 CobL Precorrin-6B meth 65.8 10 0.00023 37.3 4.9 52 266-333 28-82 (187)
45 PF03848 TehB: Tellurite resis 64.6 45 0.00098 32.9 9.2 111 262-405 20-131 (192)
46 PF00891 Methyltransf_2: O-met 63.7 27 0.00058 34.5 7.6 108 262-408 90-201 (241)
47 PF03291 Pox_MCEL: mRNA cappin 63.3 49 0.0011 35.2 9.8 115 272-404 62-183 (331)
48 PLN02232 ubiquinone biosynthes 63.1 1.1E+02 0.0023 28.6 11.1 33 366-406 47-81 (160)
49 TIGR00138 gidB 16S rRNA methyl 63.0 1.2E+02 0.0026 29.1 11.7 96 274-406 44-141 (181)
50 PRK09489 rsmC 16S ribosomal RN 62.0 65 0.0014 34.3 10.5 115 262-405 186-301 (342)
51 PF02353 CMAS: Mycolic acid cy 61.9 47 0.001 34.3 9.2 113 262-406 52-165 (273)
52 TIGR00452 methyltransferase, p 60.7 98 0.0021 32.7 11.4 113 263-406 112-224 (314)
53 COG4106 Tam Trans-aconitate me 60.1 28 0.0006 35.6 6.8 110 268-414 26-136 (257)
54 TIGR03439 methyl_EasF probable 59.1 73 0.0016 33.9 10.1 150 263-433 69-234 (319)
55 smart00828 PKS_MT Methyltransf 58.5 77 0.0017 30.6 9.6 99 275-405 2-102 (224)
56 PRK13255 thiopurine S-methyltr 56.6 1.8E+02 0.0038 28.9 11.9 33 273-314 38-70 (218)
57 PRK11705 cyclopropane fatty ac 55.9 1E+02 0.0022 33.3 10.9 108 263-406 158-266 (383)
58 PRK06922 hypothetical protein; 53.3 1.1E+02 0.0024 35.9 11.0 109 274-405 420-535 (677)
59 smart00650 rADc Ribosomal RNA 52.1 1.4E+02 0.003 27.9 9.9 42 263-313 4-45 (169)
60 PRK10909 rsmD 16S rRNA m(2)G96 51.4 2.2E+02 0.0047 28.1 11.5 105 275-412 56-164 (199)
61 PRK07580 Mg-protoporphyrin IX 50.1 1.7E+02 0.0037 28.2 10.5 98 272-404 63-163 (230)
62 PRK00121 trmB tRNA (guanine-N( 49.3 2.1E+02 0.0045 27.7 11.0 112 272-405 40-154 (202)
63 KOG3178 Hydroxyindole-O-methyl 48.8 14 0.0003 39.6 2.8 89 361-491 236-327 (342)
64 PRK11873 arsM arsenite S-adeno 48.6 2.7E+02 0.0059 27.9 12.1 100 274-405 79-181 (272)
65 TIGR00537 hemK_rel_arch HemK-r 45.1 2.6E+02 0.0057 26.1 11.0 104 275-406 22-139 (179)
66 PRK15001 SAM-dependent 23S rib 44.8 1E+02 0.0023 33.4 8.8 121 262-406 218-339 (378)
67 PRK00274 ksgA 16S ribosomal RN 43.6 1.2E+02 0.0027 30.8 8.8 57 248-313 13-74 (272)
68 TIGR00091 tRNA (guanine-N(7)-) 43.0 1.4E+02 0.003 28.6 8.6 33 274-313 18-50 (194)
69 PRK14968 putative methyltransf 43.0 2.7E+02 0.0059 25.6 12.0 32 273-313 24-55 (188)
70 PF07521 RMMBL: RNA-metabolisi 42.6 48 0.001 24.7 4.1 40 363-407 1-40 (43)
71 PRK00107 gidB 16S rRNA methylt 42.4 3.3E+02 0.0071 26.4 12.1 96 274-406 47-144 (187)
72 TIGR01983 UbiG ubiquinone bios 41.3 3.3E+02 0.0071 26.1 14.1 100 273-405 46-147 (224)
73 TIGR03534 RF_mod_PrmC protein- 38.7 3.1E+02 0.0068 26.6 10.5 78 273-373 88-166 (251)
74 TIGR03840 TMPT_Se_Te thiopurin 38.7 2.8E+02 0.006 27.5 10.1 32 274-314 36-67 (213)
75 TIGR01626 ytfJ_HI0045 conserve 38.3 1.1E+02 0.0024 30.0 7.1 113 272-397 59-182 (184)
76 PF07522 DRMBL: DNA repair met 37.5 1.4E+02 0.003 26.3 7.0 33 361-403 71-103 (110)
77 PLN03075 nicotianamine synthas 33.5 4.1E+02 0.0088 28.1 10.8 106 275-407 126-233 (296)
78 COG0123 AcuC Deacetylases, inc 32.7 28 0.0006 37.3 2.1 40 363-405 206-246 (340)
79 PLN02446 (5-phosphoribosyl)-5- 32.3 54 0.0012 34.0 4.0 27 269-296 55-81 (262)
80 PRK13168 rumA 23S rRNA m(5)U19 32.1 4.7E+02 0.01 28.6 11.6 101 271-406 296-399 (443)
81 TIGR02469 CbiT precorrin-6Y C5 31.6 93 0.002 26.4 4.9 32 275-313 22-53 (124)
82 PLN02490 MPBQ/MSBQ methyltrans 30.3 3.1E+02 0.0068 29.4 9.5 35 272-313 113-147 (340)
83 smart00857 Resolvase Resolvase 29.8 3.9E+02 0.0085 23.8 8.9 102 321-431 16-126 (148)
84 PRK13944 protein-L-isoaspartat 29.7 4E+02 0.0086 25.8 9.5 92 263-377 63-156 (205)
85 PTZ00063 histone deacetylase; 28.7 38 0.00082 37.6 2.3 149 263-431 156-316 (436)
86 KOG1165 Casein kinase (serine/ 28.2 31 0.00067 37.4 1.5 15 268-282 162-176 (449)
87 COG1341 Predicted GTPase or GT 27.8 3.1E+02 0.0067 30.3 8.9 143 258-447 92-242 (398)
88 KOG2904 Predicted methyltransf 27.5 4.2E+02 0.0091 28.3 9.4 92 264-372 137-233 (328)
89 COG1500 Predicted exosome subu 27.3 1.7E+02 0.0036 30.0 6.3 66 438-506 85-152 (234)
90 TIGR00563 rsmB ribosomal RNA s 27.2 8.4E+02 0.018 26.6 12.6 127 260-404 226-365 (426)
91 TIGR01716 RGG_Cterm transcript 27.2 1.2E+02 0.0027 29.1 5.4 55 166-220 127-182 (220)
92 TIGR00755 ksgA dimethyladenosi 27.0 5.3E+02 0.012 25.7 10.1 43 262-313 19-61 (253)
93 PF11455 DUF3018: Protein of 26.9 39 0.00084 28.0 1.5 29 473-501 3-37 (65)
94 PTZ00338 dimethyladenosine tra 26.6 2.7E+02 0.0059 29.0 8.1 41 264-313 28-68 (294)
95 PF15609 PRTase_2: Phosphoribo 26.1 3.8E+02 0.0081 26.7 8.4 70 268-346 118-187 (191)
96 PRK11088 rrmA 23S rRNA methylt 25.7 2E+02 0.0044 29.1 6.8 72 236-313 51-122 (272)
97 PRK09328 N5-glutamine S-adenos 25.1 5.3E+02 0.011 25.6 9.7 37 270-313 106-142 (275)
98 TIGR00536 hemK_fam HemK family 24.7 6.4E+02 0.014 25.7 10.4 54 274-344 116-171 (284)
99 TIGR02129 hisA_euk phosphoribo 24.5 74 0.0016 32.9 3.4 26 269-298 50-75 (253)
100 PTZ00346 histone deacetylase; 23.3 54 0.0012 36.3 2.3 148 264-432 174-335 (429)
101 COG3457 Predicted amino acid r 22.9 3.3E+02 0.0072 29.4 7.8 109 260-368 104-229 (353)
102 PRK14121 tRNA (guanine-N(7)-)- 22.1 8E+02 0.017 27.0 10.8 43 264-313 114-156 (390)
103 cd02440 AdoMet_MTases S-adenos 21.8 3.8E+02 0.0082 20.7 9.0 31 275-313 1-31 (107)
104 PF04244 DPRP: Deoxyribodipyri 21.5 1.6E+02 0.0034 29.8 5.0 83 249-344 36-124 (224)
105 TIGR02085 meth_trns_rumB 23S r 20.7 6.9E+02 0.015 26.8 10.0 97 275-406 236-333 (374)
106 cd01836 FeeA_FeeB_like SGNH_hy 20.1 7E+02 0.015 23.0 11.3 13 302-314 1-13 (191)
107 COG2230 Cfa Cyclopropane fatty 20.0 1E+03 0.022 25.0 10.9 112 261-404 61-173 (283)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=9.3e-115 Score=912.01 Aligned_cols=369 Identities=48% Similarity=0.819 Sum_probs=354.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhccCCCCcCccccCCCCC---hhhHHHH
Q 009376 166 LKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPA---SSDLLSY 242 (536)
Q Consensus 166 L~~LLl~CA~AV~~gd~~~A~~lL~~L~~laS~~Gdp~QRLaayF~eAL~aRl~~sgs~~y~aL~~~~p~---~~ell~a 242 (536)
|++||++||+||+.||.+.|+.+|++|++++||.|||+||||+||+|||.+||.++|+++|+++.+..++ ..+.+.+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999888655443 5678889
Q ss_pred HHHHHhcCCcchhhhhhhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChH
Q 009376 243 MHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGL 322 (536)
Q Consensus 243 ~~~l~e~~P~~kFa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L 322 (536)
+++||++|||+||||||||||||||++|+++||||||||++|.|||+|||+||.|++|||+||||||+.|.++ ....+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765 34689
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEee-cCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcE
Q 009376 323 GIVGKRLSKLAEQFKVPFEFHAAN-MSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKV 401 (536)
Q Consensus 323 ~~tG~rL~~fA~s~gvpFeF~~V~-~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkv 401 (536)
++||+||.+||+++||||||++|. ..++++++++|++++||+|||||+|+||||.+++....+||+.||+.||+|+|+|
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 999999999999999999999964 4567799999999999999999999999999999888899999999999999999
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHhhhhhhhccCCcccccccchhhHHHH
Q 009376 402 VTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSR 481 (536)
Q Consensus 402 vtlvEqEan~N~~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~r 481 (536)
||++|+|+|||+++|++||.|||+||+|+|||||+++|+++.+|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccCChHHHHHHHHHHHccC-CCcEEEeeCCEEEEEeCCceeEEEeeeC
Q 009376 482 FTMAGFRPYPLSSVVNATIKTLLENYC-NRYRLQERDGALFLGWMNRDLVASCAWR 536 (536)
Q Consensus 482 ~~~AGF~~~plS~~~~~qak~LL~~y~-~gy~l~e~~g~L~LgWk~rpL~s~SAWr 536 (536)
|.+|||+++|+|+.+..|||.||+.|. +||+|++++|||+||||++||+++||||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999999999986 8999999999999999999999999998
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.69 E-value=0.051 Score=54.46 Aligned_cols=190 Identities=15% Similarity=0.201 Sum_probs=99.2
Q ss_pred HhcCCcchhhhhhhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHH
Q 009376 247 YEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVG 326 (536)
Q Consensus 247 ~e~~P~~kFa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG 326 (536)
....|.+...|-.++..+-.-+.. .-+|+|+|.|.|.--..|.+.+ ..|..++||||.+.. .++.+.
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~~--~~~vLDlGcGtG~~~~~l~~~~-----~~~~~~v~gvD~S~~------ml~~A~ 99 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQP--GTQVYDLGCSLGAATLSVRRNI-----HHDNCKIIAIDNSPA------MIERCR 99 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCCC--CCEEEEEcccCCHHHHHHHHhc-----CCCCCeEEEEeCCHH------HHHHHH
Confidence 456788877766655443333332 2479999999987433333322 125689999998653 355555
Q ss_pred HHHHHHHHhcCC--cEEEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcE-E
Q 009376 327 KRLSKLAEQFKV--PFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKV-V 402 (536)
Q Consensus 327 ~rL~~fA~s~gv--pFeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkv-v 402 (536)
+++.+ .++ .++|+. .+..++. .....+++. .+.|||++++ .+..+|+.+ +.|+|.- +
T Consensus 100 ~~~~~----~~~~~~v~~~~--~d~~~~~-----~~~~D~vv~--~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 100 RHIDA----YKAPTPVDVIE--GDIRDIA-----IENASMVVL--NFTLQFLEPS------ERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred HHHHh----cCCCCCeEEEe--CChhhCC-----CCCCCEEeh--hhHHHhCCHH------HHHHHHHHHHHhcCCCCEE
Confidence 55433 333 355533 2222221 122344444 4678998642 245666655 7889974 4
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHhhhhhhhccCCcccccccchhhHHHHH
Q 009376 403 TLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRF 482 (536)
Q Consensus 403 tlvEqEan~N~~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~r~ 482 (536)
+++|.=.. .++...+.+.+....|. .....+ . ..+++. .....| +-+.++......+|
T Consensus 161 ~l~e~~~~-~~~~~~~~~~~~~~~~~-----~~~g~s---~--~ei~~~--~~~~~~---------~~~~~~~~~~~~~L 218 (247)
T PRK15451 161 VLSEKFSF-EDAKVGELLFNMHHDFK-----RANGYS---E--LEISQK--RSMLEN---------VMLTDSVETHKARL 218 (247)
T ss_pred EEEEecCC-CcchhHHHHHHHHHHHH-----HHcCCC---H--HHHHHH--HHHHHh---------hcccCCHHHHHHHH
Confidence 56663222 22233344443332221 111111 1 112221 112223 33456788999999
Q ss_pred HhCCCccc
Q 009376 483 TMAGFRPY 490 (536)
Q Consensus 483 ~~AGF~~~ 490 (536)
+.|||+.+
T Consensus 219 ~~aGF~~v 226 (247)
T PRK15451 219 HKAGFEHS 226 (247)
T ss_pred HHcCchhH
Confidence 99999764
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.61 E-value=0.8 Score=44.72 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=58.9
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-E
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-F 340 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-F 340 (536)
+.++..+.-.+.-+|+|+|.|.|.-.. .|+.+ .+|..++||||.+.. .++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~--~~~~~~v~gvD~s~~------~~~~a~~~~~----~~~~~~v 98 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEA--VGPEGHVIGLDFSEN------MLSVGRQKVK----DAGLHNV 98 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHH--hCCCCEEEEEECCHH------HHHHHHHHHH----hcCCCce
Confidence 445555553444579999999998333 33333 124568999997642 2444444432 33442 2
Q ss_pred EEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHH-HHHhcCCcEEEEE
Q 009376 341 EFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLM-LVKRLSPKVVTLV 405 (536)
Q Consensus 341 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~-~VksL~Pkvvtlv 405 (536)
+| +..+..++. +.-..=+.|+.+ +.+||+++ ...+|+ ..+.|+|.-.+++
T Consensus 99 ~~--~~~d~~~~~---~~~~~fD~V~~~--~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 99 EL--VHGNAMELP---FDDNSFDYVTIG--FGLRNVPD--------YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EE--EEechhcCC---CCCCCccEEEEe--cccccCCC--------HHHHHHHHHHHcCcCeEEEE
Confidence 33 222222221 111111344443 56788754 234555 4578899865543
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.14 E-value=1 Score=44.51 Aligned_cols=106 Identities=21% Similarity=0.330 Sum_probs=59.7
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCcc
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYD 351 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~e 351 (536)
+.-+|+|+|.|.|. ++..|+.+-. .|..++||||.+.. .++.+.+++.++. .+..++|.. .+..+
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~------ml~~a~~~~~~~~--~~~~v~~~~--~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQP------MVERCRQHIAAYH--SEIPVEILC--NDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHH------HHHHHHHHHHhcC--CCCCeEEEE--CChhh
Confidence 33479999999995 4444544421 25689999998642 3555555554321 123445533 22222
Q ss_pred ccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 009376 352 VQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLV 405 (536)
Q Consensus 352 v~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtlv 405 (536)
+. .....++ -+.+.|||++++ .+..+|+.+ +.|+|.-++++
T Consensus 118 ~~-----~~~~d~v--~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 118 VE-----IKNASMV--ILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CC-----CCCCCEE--eeecchhhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence 21 2223333 355678998642 244566655 67899887755
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.67 E-value=0.95 Score=46.63 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=66.9
Q ss_pred cHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcE
Q 009376 261 NGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPF 340 (536)
Q Consensus 261 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 340 (536)
.+.|++.+.-.+.-+|+|+|-|.|. +..+++++- |.+++|++|.+. .++.+.+ .++..|+.=
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~~-------~~~~a~~----~~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLPG-------AIDLVNE----NAAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecHH-------HHHHHHH----HHHhCCccc
Confidence 5677777765666799999999984 344444443 678999998642 2444443 345556542
Q ss_pred EEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcE-EEEEecCCC
Q 009376 341 EFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKV-VTLVEQESN 410 (536)
Q Consensus 341 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkv-vtlvEqEan 410 (536)
.++.+..+..+. . +..++++.+ ...||+..++ ....+|+.+ +.|+|.- ++++|.-.+
T Consensus 200 rv~~~~~d~~~~---~--~~~~D~v~~--~~~lh~~~~~------~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 200 RMRGIAVDIYKE---S--YPEADAVLF--CRILYSANEQ------LSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred eEEEEecCccCC---C--CCCCCEEEe--EhhhhcCChH------HHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 222333322111 1 112344433 3467877543 124567655 7899954 446665443
No 6
>PRK06202 hypothetical protein; Provisional
Probab=92.56 E-value=2.1 Score=42.21 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=56.4
Q ss_pred ccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecC
Q 009376 269 KDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMS 348 (536)
Q Consensus 269 ~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~ 348 (536)
...+...|+|+|.|.|. +...|.....+ ..|..+|||||.+.. .++...++. +.-++.+.. ...
T Consensus 57 ~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~------~l~~a~~~~----~~~~~~~~~--~~~- 120 (232)
T PRK06202 57 SADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPR------AVAFARANP----RRPGVTFRQ--AVS- 120 (232)
T ss_pred CCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHH------HHHHHHhcc----ccCCCeEEE--Eec-
Confidence 33455789999999996 33333222221 224579999998652 233332221 123454443 221
Q ss_pred CccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 009376 349 GYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLV 405 (536)
Q Consensus 349 ~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkvvtlv 405 (536)
.++. ..++..=+|-|.+.|||++++ ....+|+.+..+.-.++++.
T Consensus 121 -~~l~-----~~~~~fD~V~~~~~lhh~~d~------~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 121 -DELV-----AEGERFDVVTSNHFLHHLDDA------EVVRLLADSAALARRLVLHN 165 (232)
T ss_pred -cccc-----ccCCCccEEEECCeeecCChH------HHHHHHHHHHHhcCeeEEEe
Confidence 1111 122333344445679999763 13467777765554555544
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.87 E-value=6.7 Score=39.81 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=70.4
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..+++.+.-.+.-+|+|+|.|.|. +...|+.+- +|.-+|||||.+.. .++.+.++....++...-..+
T Consensus 63 ~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~------ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 63 RMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSE------QLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHH------HHHHHHHHhhhhhhccCCCeE
Confidence 334444443445589999999997 334555542 23459999998753 356555554322222222344
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEE-EEEecCCCCCCCCchHHH
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVV-TLVEQESNTNTAAFYPRF 420 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkvv-tlvEqEan~N~~~F~~RF 420 (536)
|..- +. ..+...++..=+|-+.+.|||+++ +...+-.+.|-|+|.-. +++| -.....+|...+
T Consensus 131 ~~~~--d~-----~~lp~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG~l~i~d--~~~~~~~~~~~~ 194 (261)
T PLN02233 131 WIEG--DA-----TDLPFDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGSRVSILD--FNKSTQPFTTSM 194 (261)
T ss_pred EEEc--cc-----ccCCCCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCcEEEEEE--CCCCCcHHHHHH
Confidence 4332 21 223333343434556678999864 23334445578899744 3554 333334555555
Q ss_pred H
Q 009376 421 L 421 (536)
Q Consensus 421 ~ 421 (536)
.
T Consensus 195 ~ 195 (261)
T PLN02233 195 Q 195 (261)
T ss_pred H
Confidence 4
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=91.72 E-value=1.7 Score=43.48 Aligned_cols=106 Identities=23% Similarity=0.241 Sum_probs=61.0
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEE
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEF 342 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 342 (536)
.+++.+.-.+.-+|+|+|.|.|. +...|+.+- |..++||||.+.. ..+.|+..++.|
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~--------------~~~~a~~~~~~~-- 76 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPE--------------MVAAARERGVDA-- 76 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHH--------------HHHHHHhcCCcE--
Confidence 46666665556789999999984 455666653 3468999997632 223344445543
Q ss_pred EEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 009376 343 HAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVE 406 (536)
Q Consensus 343 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvE 406 (536)
.. .+..++. ..+..=+|-|...|||+++ +...+-+..+.|+|.-.+++.
T Consensus 77 ~~--~d~~~~~------~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 77 RT--GDVRDWK------PKPDTDVVVSNAALQWVPE-------HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EE--cChhhCC------CCCCceEEEEehhhhhCCC-------HHHHHHHHHHhCCCCcEEEEE
Confidence 22 1111111 1122333334457899875 233344455789999777665
No 9
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.66 E-value=12 Score=35.64 Aligned_cols=114 Identities=22% Similarity=0.275 Sum_probs=60.2
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..+++.+...+...|+|+|.+.|.- ...++.+ +|+..++|+|+.+.. .++.+.+++. .+-...
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~----~~~~~~~--~~~~~~~~~iD~~~~------~~~~~~~~~~-----~~~~i~ 91 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDL----AIELAKS--APDRGKVTGVDFSSE------MLEVAKKKSE-----LPLNIE 91 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChh----HHHHHHh--cCCCceEEEEECCHH------HHHHHHHHhc-----cCCCce
Confidence 4556666555677999999998852 3334333 233478999997532 2344433332 222334
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHH-HHHhcCCcEEE-EEec
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLM-LVKRLSPKVVT-LVEQ 407 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~-~VksL~Pkvvt-lvEq 407 (536)
|..... .+.. ..++..=+|-+.+.+||+.+ .+.+|+ ..+.|+|.-.+ +++.
T Consensus 92 ~~~~d~--~~~~-----~~~~~~D~i~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 92 FIQADA--EALP-----FEDNSFDAVTIAFGLRNVTD--------IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEecch--hcCC-----CCCCcEEEEEEeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 433221 1211 12233334445567888754 234554 44667888665 4443
No 10
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.53 E-value=7.5 Score=42.53 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=64.6
Q ss_pred cHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcE
Q 009376 261 NGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPF 340 (536)
Q Consensus 261 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 340 (536)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++||||.+.. .++.+.++. ...+...
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~------~l~~A~~~~----~~~~~~v 316 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVN------MISFALERA----IGRKCSV 316 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHH------HHHHHHHHh----hcCCCce
Confidence 3456666653445689999999995 3445666552 48999998642 244443332 2334455
Q ss_pred EEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 009376 341 EFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVE 406 (536)
Q Consensus 341 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvE 406 (536)
+|...... + +...++..=+|-|...++|+++ +...+-...+.|+|.-.+++.
T Consensus 317 ~~~~~d~~--~-----~~~~~~~fD~I~s~~~l~h~~d-------~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 317 EFEVADCT--K-----KTYPDNSFDVIYSRDTILHIQD-------KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEEEcCcc--c-----CCCCCCCEEEEEECCcccccCC-------HHHHHHHHHHHcCCCeEEEEE
Confidence 66443221 1 1111232334445567889864 233344445788999887665
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=91.52 E-value=1.1 Score=40.47 Aligned_cols=93 Identities=24% Similarity=0.347 Sum_probs=51.9
Q ss_pred cCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q 009376 270 DEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSG 349 (536)
Q Consensus 270 ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~ 349 (536)
..+.-.|+|+|.|.| .| ...|+.+ |. ++||+|..... ++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~~~~------~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDISPQM------IEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESSHHH------HHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECCHHH------Hhh-----------hhhhhhhhhhh---
Confidence 355669999999999 44 4455554 22 99999986421 111 22222221111
Q ss_pred ccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 009376 350 YDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLV 405 (536)
Q Consensus 350 ~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtlv 405 (536)
.....++-.=+|-|...|||+++ + ..+|+.| +.|+|.-++++
T Consensus 71 ------~~~~~~~~fD~i~~~~~l~~~~d-------~-~~~l~~l~~~LkpgG~l~~ 113 (161)
T PF13489_consen 71 ------DPPFPDGSFDLIICNDVLEHLPD-------P-EEFLKELSRLLKPGGYLVI 113 (161)
T ss_dssp ------THHCHSSSEEEEEEESSGGGSSH-------H-HHHHHHHHHCEEEEEEEEE
T ss_pred ------hhhccccchhhHhhHHHHhhccc-------H-HHHHHHHHHhcCCCCEEEE
Confidence 11122334445555689999974 3 3455555 66788655543
No 12
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=91.34 E-value=2.6 Score=40.79 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=65.0
Q ss_pred hhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC
Q 009376 259 SANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV 338 (536)
Q Consensus 259 tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv 338 (536)
++...|+++++-.+.-+|+|+|.|.|.--. .||.+ | .++||||.+.. .++.+ .+.++.-|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s~~------~l~~a----~~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHNPA------SIASV----LDMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECCHH------HHHHH----HHHHHHhCC
Confidence 556788888876566799999999987444 33444 2 48999997642 13333 344555677
Q ss_pred cEEEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEE
Q 009376 339 PFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVV 402 (536)
Q Consensus 339 pFeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvv 402 (536)
+..+...... ... +. ..=+.|+.+ +.+||+++ +.+..+++.+ +.|+|.-.
T Consensus 78 ~v~~~~~d~~--~~~---~~-~~fD~I~~~--~~~~~~~~------~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAYDIN--AAA---LN-EDYDFIFST--VVFMFLQA------GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEeccch--hcc---cc-CCCCEEEEe--cccccCCH------HHHHHHHHHHHHHhCCCcE
Confidence 7554433221 111 11 112344433 45788754 2355677665 67899975
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=91.18 E-value=2.2 Score=39.08 Aligned_cols=106 Identities=25% Similarity=0.363 Sum_probs=61.9
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-EEEEEeecCCc
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-FEFHAANMSGY 350 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ 350 (536)
+..+|+|+|.|.|..=..|.+.+ .|..+|||||-+.. .=++..+.++..+++ .+|..... .
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~----------~i~~a~~~~~~~~~~ni~~~~~d~--~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEE----------MIEYAKKRAKELGLDNIEFIQGDI--E 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHH----------HHHHHHHHHHHTTSTTEEEEESBT--T
T ss_pred CCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHH----------HHHHhhcccccccccccceEEeeh--h
Confidence 56789999999986554444422 13456999997642 334445567778887 66655333 3
Q ss_pred cccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 009376 351 DVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVE 406 (536)
Q Consensus 351 ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvE 406 (536)
++... +. +.+=+|.+...|||+.+ +...+-++.+.|+|.-++++.
T Consensus 65 ~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 65 DLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp CGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEEEE
Confidence 33211 22 33333444455687753 334455567888988777543
No 14
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=90.72 E-value=0.47 Score=40.42 Aligned_cols=97 Identities=30% Similarity=0.405 Sum_probs=52.3
Q ss_pred EEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCcccccc
Q 009376 276 IIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLE 355 (536)
Q Consensus 276 IIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~~ 355 (536)
|+|+|.|.|.-=..|.+.+ .+ | |..++||||-+.. .++.+.++..+ .+++.+|... +..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~~------~l~~~~~~~~~----~~~~~~~~~~--D~~~---- 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISPE------MLELAKKRFSE----DGPKVRFVQA--DARD---- 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HH------HHHHHHHHSHH----TTTTSEEEES--CTTC----
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCHH------HHHHHHHhchh----cCCceEEEEC--CHhH----
Confidence 7999999998877777776 22 2 5699999997653 25444443333 5667777332 2222
Q ss_pred CccccCCce-EEEeeccccCCCCCCCccccchHHHHHHHHH-hcCC
Q 009376 356 NLRVQPGEA-VAVNFAFMLHHVPDESVSTENYRDRLLMLVK-RLSP 399 (536)
Q Consensus 356 ~L~i~~gEa-LaVN~~~~LH~l~desv~~~n~rd~~L~~Vk-sL~P 399 (536)
+....+.+ +||.+...+||+.+ ..+..+|+.+. -|+|
T Consensus 61 -l~~~~~~~D~v~~~~~~~~~~~~------~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 61 -LPFSDGKFDLVVCSGLSLHHLSP------EELEALLRRIARLLRP 99 (101)
T ss_dssp -HHHHSSSEEEEEE-TTGGGGSSH------HHHHHHHHHHHHTEEE
T ss_pred -CcccCCCeeEEEEcCCccCCCCH------HHHHHHHHHHHHHhCC
Confidence 22223333 44444555899854 23556666654 3344
No 15
>PRK08317 hypothetical protein; Provisional
Probab=90.35 E-value=16 Score=34.96 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=57.5
Q ss_pred HHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEE
Q 009376 264 IAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFH 343 (536)
Q Consensus 264 ILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~ 343 (536)
+++.+.-...-+|+|+|.|.|. |. ..++.+- +|.-++|||+.+.. .++...++ ....+...+|.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~~~------~~~~a~~~----~~~~~~~~~~~ 74 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRSEA------MLALAKER----AAGLGPNVEFV 74 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCCHH------HHHHHHHH----hhCCCCceEEE
Confidence 5566665556689999999875 33 2333332 24569999997642 23333332 11123334443
Q ss_pred EeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 009376 344 AANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLV 405 (536)
Q Consensus 344 ~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkvvtlv 405 (536)
.... .++ ....+..=+|-+...+||+++ +...+=+..+.|+|.-.++.
T Consensus 75 ~~d~--~~~-----~~~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 75 RGDA--DGL-----PFPDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVVV 122 (241)
T ss_pred eccc--ccC-----CCCCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEEE
Confidence 3221 111 111222223344456788865 23334444467888876644
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=89.90 E-value=14 Score=37.72 Aligned_cols=190 Identities=24% Similarity=0.268 Sum_probs=109.3
Q ss_pred cCCcchhhh-hhhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHH
Q 009376 249 VCPYFKFGY-MSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGK 327 (536)
Q Consensus 249 ~~P~~kFa~-~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~ 327 (536)
..+.+.|+. .+=+++..+.+.-.+--+|+|.+.|-|-. .-.|+++-| .-+|||+|.+.+ .|+...+
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~----a~~~~k~~g---~g~v~~~D~s~~------ML~~a~~ 93 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDM----ALLLAKSVG---TGEVVGLDISES------MLEVARE 93 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHH----HHHHHHhcC---CceEEEEECCHH------HHHHHHH
Confidence 345666663 55667777766544678999999888742 233444433 789999998753 4666666
Q ss_pred HHHHHHHhcCCc-EEEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 009376 328 RLSKLAEQFKVP-FEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLV 405 (536)
Q Consensus 328 rL~~fA~s~gvp-FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtlv 405 (536)
|+.+. |+- ++| |..+ .+.|...+.-.=+|.+.|.||+++| .+..|+-+ |=|+|...++|
T Consensus 94 k~~~~----~~~~i~f--v~~d-----Ae~LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 94 KLKKK----GVQNVEF--VVGD-----AENLPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred Hhhcc----CccceEE--EEec-----hhhCCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCeEEEE
Confidence 65442 322 444 2232 3344555555667888899999976 35555544 77899987655
Q ss_pred ecCCCCCCCCchHHHHHHHH-HHHH-HHHhhhhccCCChHHHHHHHHHHHHHhhhhhhhccCCcccccccchhhHHHHHH
Q 009376 406 EQESNTNTAAFYPRFLEALN-YYTA-MFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFT 483 (536)
Q Consensus 406 EqEan~N~~~F~~RF~EaL~-yYsA-lFDSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~r~~ 483 (536)
-.=.....+ -|...++ ||.. ++=.+......+..+.. +|..-| +++-..+.-...|.
T Consensus 155 le~~~p~~~----~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~-----yL~eSi------------~~~p~~~~l~~~~~ 213 (238)
T COG2226 155 LEFSKPDNP----VLRKAYILYYFKYVLPLIGKLVAKDAEAYE-----YLAESI------------RRFPDQEELKQMIE 213 (238)
T ss_pred EEcCCCCch----hhHHHHHHHHHHhHhhhhceeeecChHHHH-----HHHHHH------------HhCCCHHHHHHHHH
Confidence 433333333 3444444 4444 55455443332333221 222222 33344456666777
Q ss_pred hCCCcccc
Q 009376 484 MAGFRPYP 491 (536)
Q Consensus 484 ~AGF~~~p 491 (536)
.+||+.+.
T Consensus 214 ~~gf~~i~ 221 (238)
T COG2226 214 KAGFEEVR 221 (238)
T ss_pred hcCceEEe
Confidence 88887664
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=89.00 E-value=13 Score=37.72 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=63.2
Q ss_pred hhhhhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHh
Q 009376 256 GYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQ 335 (536)
Q Consensus 256 a~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s 335 (536)
+=+-+...|++.+.-...-+|+|+|.+.|.-- ..|+.+. ..++|||+.+.. .++...++...
T Consensus 36 gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s~~------~~~~a~~~~~~---- 97 (263)
T PTZ00098 36 GGIEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDICEK------MVNIAKLRNSD---- 97 (263)
T ss_pred CchHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECCHH------HHHHHHHHcCc----
Confidence 33455677777776566678999999998733 3344433 248999997642 23333333221
Q ss_pred cCCcEEEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 009376 336 FKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLV 405 (536)
Q Consensus 336 ~gvpFeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtlv 405 (536)
.-.++|...... .+...++..=+|-+...++|++.+ .+..+|+.+ +.|+|.-.+++
T Consensus 98 -~~~i~~~~~D~~-------~~~~~~~~FD~V~s~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 98 -KNKIEFEANDIL-------KKDFPENTFDMIYSRDAILHLSYA------DKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred -CCceEEEECCcc-------cCCCCCCCeEEEEEhhhHHhCCHH------HHHHHHHHHHHHcCCCcEEEE
Confidence 112344332211 111112222122233456777532 245666655 77899877655
No 18
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=88.60 E-value=15 Score=35.21 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=51.9
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCcc
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYD 351 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~e 351 (536)
+..+|+|+|.|.|.-.. .|+.+ + |..++||||.+.. .++.+.+++. -.++| +..+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~----~l~~~--~-~~~~~~~~D~~~~------~~~~~~~~~~-------~~~~~--~~~d~~~ 91 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTR----ALLKR--F-PQAEFIALDISAG------MLAQAKTKLS-------ENVQF--ICGDAEK 91 (240)
T ss_pred CCCeEEEECCCccHHHH----HHHHh--C-CCCcEEEEeChHH------HHHHHHHhcC-------CCCeE--Eecchhh
Confidence 34689999999996333 33333 1 4678999997542 2333333322 12223 2222222
Q ss_pred ccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 352 VQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 352 v~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
. ...++-.=+|-+.+.|||+.+ ...+|+.+ +.|+|.-++++.
T Consensus 92 ~-----~~~~~~fD~vi~~~~l~~~~~--------~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 92 L-----PLEDSSFDLIVSNLALQWCDD--------LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred C-----CCCCCceeEEEEhhhhhhccC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 1 111221222334467888754 23456655 568998776654
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=88.35 E-value=4.8 Score=42.60 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=55.3
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC--cEEEEEeecCCcc
Q 009376 274 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV--PFEFHAANMSGYD 351 (536)
Q Consensus 274 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv--pFeF~~V~~~~~e 351 (536)
-.|+|+|.|.|. +...||.+ | .++||||.+.. .++...++ ++..++ ..+|.... .++
T Consensus 133 ~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~~------~i~~Ar~~----~~~~~~~~~i~~~~~d--ae~ 191 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVDK------NVKIARLH----ADMDPVTSTIEYLCTT--AEK 191 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCHH------HHHHHHHH----HHhcCcccceeEEecC--HHH
Confidence 469999999997 44566643 3 48999997642 23333222 222121 34443322 122
Q ss_pred ccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 352 VQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 352 v~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
+ ....+..=+|-|...|||+.|. +.+|+.+ +-|+|.-.+++.
T Consensus 192 l-----~~~~~~FD~Vi~~~vLeHv~d~--------~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 L-----ADEGRKFDAVLSLEVIEHVANP--------AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred h-----hhccCCCCEEEEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEEEE
Confidence 2 1112223344456689999762 4566666 567998888764
No 20
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=87.99 E-value=1 Score=46.01 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=33.2
Q ss_pred cCCeeEEEecccCCccchHHHHHHHhcCCC--CCCeEEEEeecCCCC
Q 009376 270 DEDRVHIIDFQIGQGSQWITLIQAFAARPG--GPPHIRITGIDDSIS 314 (536)
Q Consensus 270 ge~rVHIIDf~I~~G~QWpsLiqaLA~R~g--GPP~LRITgI~~~~s 314 (536)
..+.++|.|.|.+.|--.-+|--.|+..-. ..+..+|+|+|.+..
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~ 143 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK 143 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH
Confidence 446799999999999887777666655421 234789999998753
No 21
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=87.88 E-value=1.7 Score=43.72 Aligned_cols=115 Identities=24% Similarity=0.290 Sum_probs=62.9
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEE
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEF 342 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 342 (536)
.+++.+...+-..|+|.+.|.|.-+..| +.+- +|.-+|||+|.+.. .|+...+++.+.... ..+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~--~~~~~v~~vD~s~~------ML~~a~~k~~~~~~~---~i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRV--GPNGKVVGVDISPG------MLEVARKKLKREGLQ---NIEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGS--S---EEEEEES-HH------HHHHHHHHHHHTT-----SEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHC--CCccEEEEecCCHH------HHHHHHHHHHhhCCC---CeeE
Confidence 4555566666679999999999755544 4332 24559999998752 466666666654322 3344
Q ss_pred EEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEE-EEe
Q 009376 343 HAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVT-LVE 406 (536)
Q Consensus 343 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkvvt-lvE 406 (536)
.. .+ .+.|....+..=+|-|.|.||+++| +...+=.+.|-|+|.-.+ ++|
T Consensus 103 v~--~d-----a~~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 103 VQ--GD-----AEDLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EE---B-----TTB--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EE--cC-----HHHhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCeEEEEee
Confidence 22 22 3445555677778889999999976 234455566889997644 555
No 22
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.82 E-value=31 Score=33.23 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=27.3
Q ss_pred HHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 264 IAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 264 ILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
+++.+.-.+..+|+|+|.+.|.- ...++.+ +|+..++|+++.+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~----~~~l~~~--~~~~~~v~~~D~s~ 86 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDL----AIALAKA--VGKTGEVVGLDFSE 86 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHH----HHHHHHH--cCCCCeEEEEeCCH
Confidence 33344333457899999999862 2223332 13478999999764
No 23
>PRK05785 hypothetical protein; Provisional
Probab=86.68 E-value=15 Score=36.51 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=50.4
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCccc
Q 009376 273 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDV 352 (536)
Q Consensus 273 rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev 352 (536)
.-.|+|+|.|.|.-. ..|+.+.+ .+|||||.+.. .++.. +.- .+ + +..+
T Consensus 52 ~~~VLDlGcGtG~~~----~~l~~~~~----~~v~gvD~S~~------Ml~~a--------~~~-~~--~--~~~d---- 100 (226)
T PRK05785 52 PKKVLDVAAGKGELS----YHFKKVFK----YYVVALDYAEN------MLKMN--------LVA-DD--K--VVGS---- 100 (226)
T ss_pred CCeEEEEcCCCCHHH----HHHHHhcC----CEEEEECCCHH------HHHHH--------Hhc-cc--e--EEec----
Confidence 347999999999543 34454431 48999997642 23322 211 11 1 2211
Q ss_pred cccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 353 QLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 353 ~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
.+.+...++..=+|-+.+.|||++| ++.+|+.+ |-|+|.+ .++|
T Consensus 101 -~~~lp~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~-~ile 145 (226)
T PRK05785 101 -FEALPFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQV-GFIA 145 (226)
T ss_pred -hhhCCCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCce-EEEE
Confidence 2233344444445555668899865 23455554 6778854 3444
No 24
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=86.33 E-value=8 Score=37.93 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=55.4
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCccccc
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQL 354 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~ 354 (536)
.|+|+|.|.|..-..|.+.+ |..++||||.+.. .++.+.+++ -++ +|... +..+
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS~~------~l~~A~~~~------~~~--~~~~~--d~~~--- 99 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEINEY------AVEKAKAYL------PNI--NIIQG--SLFD--- 99 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECCHH------HHHHHHhhC------CCC--cEEEe--eccC---
Confidence 48999999996555544322 2368999997653 244333321 122 22211 1111
Q ss_pred cCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEecCC
Q 009376 355 ENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQES 409 (536)
Q Consensus 355 ~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvEqEa 409 (536)
...++..=+|-+...|||++. ..+..+++.+....-+.++++|-..
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl~p------~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHINP------DNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCCCCCEEEEEECChhhhCCH------HHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 112222223335567888853 2356778888777778888888643
No 25
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=86.28 E-value=1.7 Score=44.63 Aligned_cols=137 Identities=20% Similarity=0.306 Sum_probs=73.5
Q ss_pred hhhhhcHHHHHhcc----cCCeeEEEecccCCcc-chHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHH
Q 009376 256 GYMSANGAIAEAMK----DEDRVHIIDFQIGQGS-QWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLS 330 (536)
Q Consensus 256 a~~tANqAILEA~~----ge~rVHIIDf~I~~G~-QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~ 330 (536)
+++++-..||+.++ +-.--+|+|||-|-|+ =|.. .+.+ +-..++|.|+.+. .+..+|++|.
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s~-------~~~~l~~~l~ 78 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRSP-------EMLELAKRLL 78 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCCH-------HHHHHHHHHH
Confidence 44556666666665 3344599999999884 3322 2222 1357899999764 3667788775
Q ss_pred HHHHhcCCcE-EEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEecC
Q 009376 331 KLAEQFKVPF-EFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVEQE 408 (536)
Q Consensus 331 ~fA~s~gvpF-eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvEqE 408 (536)
+-.. +..- +.. ..+..+...+.+.+-|++ .+.|-.|++ ..|..+++.+ +.++| ++||||..
T Consensus 79 ~~~~--~~~~~~~~------~~~~~~~~~~~~~DLvi~--s~~L~EL~~------~~r~~lv~~LW~~~~~-~LVlVEpG 141 (274)
T PF09243_consen 79 RAGP--NNRNAEWR------RVLYRDFLPFPPDDLVIA--SYVLNELPS------AARAELVRSLWNKTAP-VLVLVEPG 141 (274)
T ss_pred hccc--ccccchhh------hhhhcccccCCCCcEEEE--ehhhhcCCc------hHHHHHHHHHHHhccC-cEEEEcCC
Confidence 4322 1111 011 111122233333343333 345556654 3477888888 55666 88899854
Q ss_pred CCCCCCCchHHHHHHH
Q 009376 409 SNTNTAAFYPRFLEAL 424 (536)
Q Consensus 409 an~N~~~F~~RF~EaL 424 (536)
.. .+...+.+.++.|
T Consensus 142 t~-~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 142 TP-AGFRRIAEARDQL 156 (274)
T ss_pred Ch-HHHHHHHHHHHHH
Confidence 32 2223344444444
No 26
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=85.57 E-value=11 Score=38.64 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=59.9
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..+++++.--+.-+|+|+|.|.|. +...||.+ | .++||||.+.. .++ .+.+.|+..++.++
T Consensus 110 ~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~~------ai~----~~~~~~~~~~l~v~ 170 (287)
T PRK12335 110 SEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL-G----FDVTAVDINQQ------SLE----NLQEIAEKENLNIR 170 (287)
T ss_pred HHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCHH------HHH----HHHHHHHHcCCceE
Confidence 334444432222389999999986 33445554 2 58999997642 133 34455666788766
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEE
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVT 403 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvt 403 (536)
+......... +. ..=+.|+.+ +.|||+.++ .+..+|+.+ +.|+|.-+.
T Consensus 171 ~~~~D~~~~~-----~~-~~fD~I~~~--~vl~~l~~~------~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 171 TGLYDINSAS-----IQ-EEYDFILST--VVLMFLNRE------RIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred EEEechhccc-----cc-CCccEEEEc--chhhhCCHH------HHHHHHHHHHHhcCCCcEE
Confidence 6443221111 10 111334434 467888542 245666555 678997763
No 27
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=85.16 E-value=14 Score=35.45 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=26.4
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
.|.+.+.... +|+|+|.|.|. ++..|+.+.+ .+++||+.+.
T Consensus 6 ~i~~~i~~~~--~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s~ 46 (194)
T TIGR02081 6 SILNLIPPGS--RVLDLGCGDGE----LLALLRDEKQ----VRGYGIEIDQ 46 (194)
T ss_pred HHHHhcCCCC--EEEEeCCCCCH----HHHHHHhccC----CcEEEEeCCH
Confidence 3455554333 79999999995 4566765532 3568998653
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=84.01 E-value=17 Score=35.11 Aligned_cols=113 Identities=13% Similarity=0.155 Sum_probs=62.0
Q ss_pred hhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC
Q 009376 259 SANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV 338 (536)
Q Consensus 259 tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv 338 (536)
.++..+++.+...+.-.|+|+|.|.|. +...||.+ | .+|||||.+.. .++...+ .++..|+
T Consensus 17 ~~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~~------~i~~a~~----~~~~~~~ 77 (197)
T PRK11207 17 RTHSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNPM------SIANLER----IKAAENL 77 (197)
T ss_pred CChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCHH------HHHHHHH----HHHHcCC
Confidence 455666777665555689999999987 23345554 2 38999997642 2333322 2334455
Q ss_pred c-EEEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEE
Q 009376 339 P-FEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTL 404 (536)
Q Consensus 339 p-FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtl 404 (536)
+ .++... +..++. +. ..=+.|+.+ +.+||++++ .+..+++.+ +.|+|.-.++
T Consensus 78 ~~v~~~~~--d~~~~~---~~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 78 DNLHTAVV--DLNNLT---FD-GEYDFILST--VVLMFLEAK------TIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred CcceEEec--ChhhCC---cC-CCcCEEEEe--cchhhCCHH------HHHHHHHHHHHHcCCCcEEE
Confidence 4 333322 222221 11 112344433 456777532 355666655 7789998743
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=80.52 E-value=20 Score=35.68 Aligned_cols=112 Identities=26% Similarity=0.280 Sum_probs=62.2
Q ss_pred hcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc
Q 009376 260 ANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP 339 (536)
Q Consensus 260 ANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp 339 (536)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+- |..+++|||.+.. .++.+.+++ -.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~------~i~~a~~~~--------~~ 77 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPA------MLAEARSRL--------PD 77 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHHHhC--------CC
Confidence 35566776665556789999999983 334555553 3468999997642 233332221 12
Q ss_pred EEEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEec
Q 009376 340 FEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQ 407 (536)
Q Consensus 340 FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvEq 407 (536)
.+|..... .++... ..=+.|+ +...|||++| +...+-++.+.|+|.-.+++..
T Consensus 78 ~~~~~~d~--~~~~~~----~~fD~v~--~~~~l~~~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 78 CQFVEADI--ASWQPP----QALDLIF--ANASLQWLPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CeEEECch--hccCCC----CCccEEE--EccChhhCCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 33432211 111110 1112333 4457888865 2344555557889998887763
No 30
>PLN02244 tocopherol O-methyltransferase
Probab=79.76 E-value=29 Score=36.66 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=55.1
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC--cEEEEEeecCCc
Q 009376 273 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV--PFEFHAANMSGY 350 (536)
Q Consensus 273 rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv--pFeF~~V~~~~~ 350 (536)
.-+|+|+|.|.|. +...|+.+-+ .++|||+.+.. .+ ++..+.++..|+ ..+|... +..
T Consensus 119 ~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~------~i----~~a~~~~~~~g~~~~v~~~~~--D~~ 178 (340)
T PLN02244 119 PKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPV------QA----ARANALAAAQGLSDKVSFQVA--DAL 178 (340)
T ss_pred CCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHH------HH----HHHHHHHHhcCCCCceEEEEc--Ccc
Confidence 3479999999985 4455665542 48999997542 12 223334455565 3555432 222
Q ss_pred cccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHH-HHHhcCCcEEE
Q 009376 351 DVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLM-LVKRLSPKVVT 403 (536)
Q Consensus 351 ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~-~VksL~Pkvvt 403 (536)
+ +...++..=+|-+...+||++| +..+|+ +.+-|+|.-.+
T Consensus 179 ~-----~~~~~~~FD~V~s~~~~~h~~d--------~~~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 179 N-----QPFEDGQFDLVWSMESGEHMPD--------KRKFVQELARVAAPGGRI 219 (340)
T ss_pred c-----CCCCCCCccEEEECCchhccCC--------HHHHHHHHHHHcCCCcEE
Confidence 2 1222333334455678899976 234554 55788996544
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=79.45 E-value=15 Score=40.22 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=59.8
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..|++.+...+.-+|+|+|.|.|.--. .|+.+ + -++||||.+.. .++.. +.+ .. ..-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~----~la~~-~----~~v~giD~s~~------~l~~a-~~~---~~-~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTG----ELAKK-A----GQVIALDFIES------VIKKN-ESI---NG-HYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHH----HHHhh-C----CEEEEEeCCHH------HHHHH-HHH---hc-cCCceE
Confidence 455666654444489999999995444 34444 2 17899997542 13221 111 11 111233
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
|........ .+...++..=+|-|.+.|||++++. +..+|..+ +-|+|.-.++..
T Consensus 87 ~~~~d~~~~-----~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 87 FMCADVTSP-----DLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEEeccccc-----ccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEEE
Confidence 332222111 1222223333444556899997632 34666655 558999877553
No 32
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=78.85 E-value=19 Score=37.31 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=71.5
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEE
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEF 342 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 342 (536)
.|.+++.. ...|||+|.|.|.-=..|+++|.. ..++||||-+.. .|+.+.++|.+ +--++++++
T Consensus 56 ~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~------mL~~a~~~l~~--~~p~~~v~~ 119 (301)
T TIGR03438 56 EIAAATGA--GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISAD------ALKESAAALAA--DYPQLEVHG 119 (301)
T ss_pred HHHHhhCC--CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHH------HHHHHHHHHHh--hCCCceEEE
Confidence 35555542 347999999999877778887742 478999998753 47777777753 112344443
Q ss_pred EEeecCCcc-ccc-cCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 343 HAANMSGYD-VQL-ENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 343 ~~V~~~~~e-v~~-~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
+..+-.+ +.. .. ...+..+++.+...++++..+ ....+|+.+ +.|+|.-..++.
T Consensus 120 --i~gD~~~~~~~~~~--~~~~~~~~~~~gs~~~~~~~~------e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 120 --ICADFTQPLALPPE--PAAGRRLGFFPGSTIGNFTPE------EAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred --EEEcccchhhhhcc--cccCCeEEEEecccccCCCHH------HHHHHHHHHHHhcCCCCEEEEe
Confidence 3333221 110 11 111246777777778888542 234677777 578997666553
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=78.42 E-value=3.8 Score=34.83 Aligned_cols=106 Identities=25% Similarity=0.377 Sum_probs=58.7
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCccccc
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQL 354 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~ 354 (536)
+|+|+|.+.|.-=..|.+ .+ |..++|||+.+.. .++...+++.+ ...+-..+|+.-.. ..+.
T Consensus 4 ~vLDlGcG~G~~~~~l~~---~~----~~~~v~gvD~s~~------~~~~a~~~~~~--~~~~~~i~~~~~d~-~~~~-- 65 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALAR---LF----PGARVVGVDISPE------MLEIARERAAE--EGLSDRITFVQGDA-EFDP-- 65 (112)
T ss_dssp EEEEETTTTSHHHHHHHH---HH----TTSEEEEEESSHH------HHHHHHHHHHH--TTTTTTEEEEESCC-HGGT--
T ss_pred EEEEEcCcCCHHHHHHHh---cC----CCCEEEEEeCCHH------HHHHHHHHHHh--cCCCCCeEEEECcc-ccCc--
Confidence 679999999854333333 12 4578999998642 36666665533 23334555554322 0110
Q ss_pred cCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 355 ENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 355 ~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
+ . ..+=++++.+. +.+|++.+. ..+.++|+.+ +.|+|.-+++++
T Consensus 66 ~-~-~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 66 D-F-LEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp T-T-SSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-c-CCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 0 0 01123455555 566766532 2355667765 688998888765
No 34
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=78.11 E-value=19 Score=36.01 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEE
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEF 342 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 342 (536)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++||||.+.. .++.+.++ ++..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s~~------~l~~a~~~----~~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLSAE------MIQRAKQA----AEAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECCHH------HHHHHHHH----HHhcCCccce
Confidence 4566655 334599999999994 44566665 2 48999997642 24444433 3445553222
Q ss_pred EEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 009376 343 HAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLV 405 (536)
Q Consensus 343 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkvvtlv 405 (536)
..+..+..++.. ..++..=+|-|...|||+.+ +.+.+-...+-|+|.-.+++
T Consensus 96 ~~~~~d~~~l~~----~~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 96 QFIHCAAQDIAQ----HLETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEEEcCHHHHhh----hcCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEEE
Confidence 222222222210 11122222335567888854 33444455578899888754
No 35
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=77.05 E-value=72 Score=31.10 Aligned_cols=103 Identities=20% Similarity=0.300 Sum_probs=52.9
Q ss_pred CCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q 009376 271 EDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGY 350 (536)
Q Consensus 271 e~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ 350 (536)
.+..+|+|+|.+.|.-- ..|+.+ + .++|+|+.+.. .++.+.+++ ...++..+|......
T Consensus 47 ~~~~~vLdiG~G~G~~~----~~l~~~-~----~~v~~iD~s~~------~~~~a~~~~----~~~~~~~~~~~~~~~-- 105 (233)
T PRK05134 47 LFGKRVLDVGCGGGILS----ESMARL-G----ADVTGIDASEE------NIEVARLHA----LESGLKIDYRQTTAE-- 105 (233)
T ss_pred CCCCeEEEeCCCCCHHH----HHHHHc-C----CeEEEEcCCHH------HHHHHHHHH----HHcCCceEEEecCHH--
Confidence 34568999999988632 344443 2 46999987642 234343333 234555555443221
Q ss_pred cccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHH-HHhcCCcEEEEEe
Q 009376 351 DVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLML-VKRLSPKVVTLVE 406 (536)
Q Consensus 351 ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~-VksL~PkvvtlvE 406 (536)
++.. ...+-.=+|-+...++|+++ + ..+|+. .+.|+|.-.+++.
T Consensus 106 ~~~~----~~~~~fD~Ii~~~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 106 ELAA----EHPGQFDVVTCMEMLEHVPD-------P-ASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred Hhhh----hcCCCccEEEEhhHhhccCC-------H-HHHHHHHHHHcCCCcEEEEE
Confidence 1110 01121222334456777754 2 344444 4677888666554
No 36
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=75.71 E-value=7.9 Score=39.58 Aligned_cols=100 Identities=25% Similarity=0.390 Sum_probs=66.0
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCcc
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYD 351 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~e 351 (536)
...-|.|+|.|.| .|-+.||.. | ..+||||.+... ++.. ...|.+-|+..+|....+. +
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se~~------I~~A----k~ha~e~gv~i~y~~~~~e--d 117 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASEKP------IEVA----KLHALESGVNIDYRQATVE--D 117 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCChHH------HHHH----HHhhhhccccccchhhhHH--H
Confidence 4567999999999 677788765 3 899999976532 3333 2345566788777665542 2
Q ss_pred ccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHH-HHhcCCcEEEEE
Q 009376 352 VQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLML-VKRLSPKVVTLV 405 (536)
Q Consensus 352 v~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~-VksL~Pkvvtlv 405 (536)
+.. .-|-.=||-|+=.|+|++|. +.|++. .+-++|.-+++.
T Consensus 118 l~~-----~~~~FDvV~cmEVlEHv~dp--------~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 118 LAS-----AGGQFDVVTCMEVLEHVPDP--------ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HHh-----cCCCccEEEEhhHHHccCCH--------HHHHHHHHHHcCCCcEEEE
Confidence 211 11334477889999999873 235554 467799877754
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=74.77 E-value=1.3 Score=37.40 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=22.3
Q ss_pred EecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCc
Q 009376 277 IDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISA 315 (536)
Q Consensus 277 IDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~ 315 (536)
+|+|-+.|.==..|++.+ |..++||+|.+.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~ 32 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSM 32 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSST
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHH
Confidence 477777776666666665 88999999987654
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=74.57 E-value=36 Score=33.03 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=33.3
Q ss_pred hhhhhcHHHHHhcc--cCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 256 GYMSANGAIAEAMK--DEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 256 a~~tANqAILEA~~--ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
++-.....+++.+. ..+.-+|+|+|.|.|. +...|+.+. .+|||||.+.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s~ 87 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDISE 87 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECCH
Confidence 44455566666665 2345689999999985 555666541 3899999764
No 39
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=74.45 E-value=21 Score=37.68 Aligned_cols=103 Identities=21% Similarity=0.255 Sum_probs=58.4
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHH-hc-CCcEEEEEeecCC
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAE-QF-KVPFEFHAANMSG 349 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~-s~-gvpFeF~~V~~~~ 349 (536)
+...|+|+|.|.|. +...|+.+ | .+|||||.+.. .++...++..+.-. .. +...+|.....
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~------ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl-- 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAA------MVAEAERRAKEALAALPPEVLPKFEANDL-- 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHH------HHHHHHHHHHhcccccccccceEEEEcch--
Confidence 34689999999886 34455544 2 48999998753 35555555432100 01 23345544221
Q ss_pred ccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 009376 350 YDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLV 405 (536)
Q Consensus 350 ~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkvvtlv 405 (536)
+++ ++..=+|-|...|||++++ ....+++.++.+.|+.+++.
T Consensus 207 ~~l--------~~~fD~Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 207 ESL--------SGKYDTVTCLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hhc--------CCCcCEEEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 111 1111123355667888763 23568888888888887764
No 40
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=72.68 E-value=16 Score=29.38 Aligned_cols=93 Identities=25% Similarity=0.238 Sum_probs=51.0
Q ss_pred EecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCccccccC
Q 009376 277 IDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLEN 356 (536)
Q Consensus 277 IDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~~~ 356 (536)
+|+|.|.|.....|.+ + +-.++||||.+.. .++...+ ..+..+++ |.. . +...
T Consensus 1 LdiG~G~G~~~~~l~~----~----~~~~v~~~D~~~~------~~~~~~~----~~~~~~~~--~~~--~-----d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAK----R----GGASVTGIDISEE------MLEQARK----RLKNEGVS--FRQ--G-----DAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHH----T----TTCEEEEEES-HH------HHHHHHH----HTTTSTEE--EEE--S-----BTTS
T ss_pred CEecCcCCHHHHHHHh----c----cCCEEEEEeCCHH------HHHHHHh----cccccCch--hee--e-----hHHh
Confidence 5788888776665555 3 4589999997642 1333322 33333444 221 1 2344
Q ss_pred ccccCCceEEEeeccccCCCCCCCccccchHHHHHH-HHHhcCCcEEEE
Q 009376 357 LRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLM-LVKRLSPKVVTL 404 (536)
Q Consensus 357 L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~-~VksL~Pkvvtl 404 (536)
+...++-.=+|-+...+||+. + ++.+++ ..|-|+|.-..+
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~-------~-~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLE-------D-PEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSS-------H-HHHHHHHHHHHEEEEEEEE
T ss_pred Cccccccccccccccceeecc-------C-HHHHHHHHHHHcCcCeEEe
Confidence 455556665777777889982 2 344554 447788876554
No 41
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=71.89 E-value=56 Score=34.43 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=55.0
Q ss_pred HHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHH-HHHHHHHHhcCCcEEE
Q 009376 264 IAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVG-KRLSKLAEQFKVPFEF 342 (536)
Q Consensus 264 ILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG-~rL~~fA~s~gvpFeF 342 (536)
|++.+..-+--+|+|+|.|.|.. ...++.+ |+- +++|||.+.. .... +...+++. .+.+.+|
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~~--~V~GiD~S~~--------~l~q~~a~~~~~~-~~~~i~~ 176 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GAK--LVVGIDPSQL--------FLCQFEAVRKLLG-NDQRAHL 176 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CCC--EEEEEcCCHH--------HHHHHHHHHHhcC-CCCCeEE
Confidence 34444322224799999999843 2244444 332 5999996531 1111 11112221 1224455
Q ss_pred EEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 009376 343 HAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVE 406 (536)
Q Consensus 343 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvE 406 (536)
..... +++ .. ++-.=+|-|...|||+.+ +.+.+-...+.|+|.-.++.|
T Consensus 177 ~~~d~--e~l-----p~-~~~FD~V~s~~vl~H~~d-------p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 177 LPLGI--EQL-----PA-LKAFDTVFSMGVLYHRRS-------PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EeCCH--HHC-----CC-cCCcCEEEECChhhccCC-------HHHHHHHHHHhcCCCcEEEEE
Confidence 44322 222 11 121122334556888753 455555666888998776665
No 42
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=67.33 E-value=22 Score=32.48 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=29.2
Q ss_pred cccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 268 MKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 268 ~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
-...+..+|||||-|.|.==..|-..|... .|.++|+||+...
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNE 63 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCc
Confidence 345778999999999984322232333222 2789999999765
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=66.60 E-value=93 Score=30.81 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=29.3
Q ss_pred cHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 261 NGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 261 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
-..+++.+...+.-.|+|+|.|.|. +.+.|+.+ + -++||||.+.
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s~ 74 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLSP 74 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECCH
Confidence 3445566654444579999999994 45666654 2 4899999764
No 44
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=65.79 E-value=10 Score=37.33 Aligned_cols=52 Identities=17% Similarity=0.424 Sum_probs=34.8
Q ss_pred HhcccCCeeEEEecccCCc---cchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHH
Q 009376 266 EAMKDEDRVHIIDFQIGQG---SQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLA 333 (536)
Q Consensus 266 EA~~ge~rVHIIDf~I~~G---~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA 333 (536)
-+++=.+.=|++|+|-+.| .+|. ++ .|..|+++|+.... .++.+.+.+.+|.
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~~~------a~~~~~~N~~~fg 82 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERDEE------ALELIERNAARFG 82 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecCHH------HHHHHHHHHHHhC
Confidence 3344334449999999988 4665 22 37899999997643 4677777665553
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=64.62 E-value=45 Score=32.90 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=67.8
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..+++|++--+.--++|+|.|.|-== --||.+ -..+|+||-+..+ + ++|.+.|+.-+++++
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRNa----lyLA~~-----G~~VtAvD~s~~a------l----~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRNA----LYLASQ-----GFDVTAVDISPVA------L----EKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHHH----HHHHHT-----T-EEEEEESSHHH------H----HHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHHH----HHHHHC-----CCeEEEEECCHHH------H----HHHHHHHhhcCceeE
Confidence 45777877666778999999998421 134554 2789999976532 2 457888999999977
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHH-hcCCcEEEEE
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVK-RLSPKVVTLV 405 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~Vk-sL~Pkvvtlv 405 (536)
......... .+ +++.=+|.+...++++..+ .++.+++.++ .++|.-+.+.
T Consensus 81 ~~~~Dl~~~-------~~-~~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 81 TRVADLNDF-------DF-PEEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEE-BGCCB-------S--TTTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEecchhc-------cc-cCCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEEEEE
Confidence 765443322 22 1333355566778888643 3567777765 5799765544
No 46
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=63.65 E-value=27 Score=34.47 Aligned_cols=108 Identities=23% Similarity=0.228 Sum_probs=59.3
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..++++..=...-+|||+|-+.|..=. +|+.+- |.+|+|..|.|.. ++.+ ++ .=..+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~----~l~~~~---P~l~~~v~Dlp~v-------~~~~-~~--------~~rv~ 146 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAI----ALARAY---PNLRATVFDLPEV-------IEQA-KE--------ADRVE 146 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHH----HHHHHS---TTSEEEEEE-HHH-------HCCH-HH--------TTTEE
T ss_pred hhhhccccccCccEEEeccCcchHHHH----HHHHHC---CCCcceeeccHhh-------hhcc-cc--------ccccc
Confidence 345555554455589999999994433 333332 7899999998742 1111 11 22344
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCc---EEEEEecC
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPK---VVTLVEQE 408 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pk---vvtlvEqE 408 (536)
|.+-..- +.+. . +=+|-+...||+.+|+. -..+|+.+ +.|+|. .++|+|.=
T Consensus 147 ~~~gd~f------~~~P---~-~D~~~l~~vLh~~~d~~------~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 147 FVPGDFF------DPLP---V-ADVYLLRHVLHDWSDED------CVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp EEES-TT------TCCS---S-ESEEEEESSGGGS-HHH------HHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cccccHH------hhhc---c-ccceeeehhhhhcchHH------HHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 4332211 2222 2 44555567899998753 23566666 678886 66677653
No 47
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=63.29 E-value=49 Score=35.25 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=64.2
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhc---CCcEEEEEeecC
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQF---KVPFEFHAANMS 348 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~---gvpFeF~~V~~~ 348 (536)
+..+|+|++.|.|. .|..-...+ -=++.|||.+.. .++++.+|..+.-+.. ...+.|.+....
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~~-----i~~~vg~Dis~~------si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKAK-----IKHYVGIDISEE------SIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-HH------HHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCch---hHHHHHhcC-----CCEEEEEeCCHH------HHHHHHHHHHHhccccccccccccchhheec
Confidence 67899999999985 222222222 235778887653 5899999886655432 234445443322
Q ss_pred Cccc--cc-cCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEE
Q 009376 349 GYDV--QL-ENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTL 404 (536)
Q Consensus 349 ~~ev--~~-~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtl 404 (536)
.... .+ +.+.-..+..=+|+|.|.||++-. ++.....+|+.| +.|+|.-+.+
T Consensus 128 ~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe----se~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 128 ADCFSESLREKLPPRSRKFDVVSCQFALHYAFE----SEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp STTCCSHHHCTSSSTTS-EEEEEEES-GGGGGS----SHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccchhhhhccccCCCcceeehHHHHHHhcC----CHHHHHHHHHHHHHhcCCCCEEE
Confidence 2211 11 122222357779999999999853 222334566666 7889987654
No 48
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=63.05 E-value=1.1e+02 Score=28.63 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEE-EEe
Q 009376 366 AVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVT-LVE 406 (536)
Q Consensus 366 aVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvt-lvE 406 (536)
+|-+.+.||+++| +..+|+.+ |-|+|.-.+ +.|
T Consensus 47 ~v~~~~~l~~~~d--------~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 47 AVTMGYGLRNVVD--------RLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred EEEecchhhcCCC--------HHHHHHHHHHHcCcCeEEEEEE
Confidence 3345678899864 34555555 778997544 444
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=63.03 E-value=1.2e+02 Score=29.14 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=50.9
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-EEEEEeecCCccc
Q 009376 274 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-FEFHAANMSGYDV 352 (536)
Q Consensus 274 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev 352 (536)
-+|+|+|.|.|.- ++.=+.. . |..++||||.+.. .++.+ .+.++..|++ ++|. ..+..++
T Consensus 44 ~~vLDiGcGtG~~--s~~la~~-~----~~~~V~~iD~s~~------~~~~a----~~~~~~~~~~~i~~i--~~d~~~~ 104 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GIPLAIA-R----PELKLTLLESNHK------KVAFL----REVKAELGLNNVEIV--NGRAEDF 104 (181)
T ss_pred CeEEEecCCCCcc--HHHHHHH-C----CCCeEEEEeCcHH------HHHHH----HHHHHHhCCCCeEEE--ecchhhc
Confidence 4899999999832 2221221 1 3468999997642 23333 3344556764 4443 3333332
Q ss_pred cccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 353 QLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 353 ~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
.. ..+=++|+.|+ +|++ +.++..+ +-|+|.-+++++
T Consensus 105 ~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 105 QH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 11 11123555554 4433 2355554 558999888776
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=61.97 E-value=65 Score=34.34 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=63.7
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..+++.+.....=+|+|+|.|.|. +-..|+.+. |..++|+||.+.. .++.+.+++. ..++..+
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~------Al~~A~~nl~----~n~l~~~ 248 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAA------ALESSRATLA----ANGLEGE 248 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHHH----HcCCCCE
Confidence 445565553323379999999997 334455542 4578999998653 3555555443 3456655
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHH-HHhcCCcEEEEE
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLML-VKRLSPKVVTLV 405 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~-VksL~Pkvvtlv 405 (536)
|... +..+ .+ -.+=+.|+.|-+| |...+.. ......|++. .+.|+|.-..++
T Consensus 249 ~~~~--D~~~----~~-~~~fDlIvsNPPF--H~g~~~~---~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 249 VFAS--NVFS----DI-KGRFDMIISNPPF--HDGIQTS---LDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEEc--cccc----cc-CCCccEEEECCCc--cCCcccc---HHHHHHHHHHHHHhcCcCCEEEE
Confidence 5432 1111 11 1223678888765 4433221 1123445554 567899876644
No 51
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=61.90 E-value=47 Score=34.27 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=62.3
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..|+|.+.=++-=||+|+|.| |-.+...+|+|-| .++|||..+.. --+...+.++..|++-.
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~----------Q~~~a~~~~~~~gl~~~ 113 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEE----------QAEYARERIREAGLEDR 113 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HH----------HHHHHHHHHHCSTSSST
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHH----------HHHHHHHHHHhcCCCCc
Confidence 345566554445589998765 7788888998863 68999987532 12334455667787633
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
...+..+..++.. +=++ |-++-.+-|+..+ ..+.|++.+ +-|+|.-..++.
T Consensus 114 v~v~~~D~~~~~~------~fD~--IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 114 VEVRLQDYRDLPG------KFDR--IVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEEES-GGG---------S-SE--EEEESEGGGTCGG------GHHHHHHHHHHHSETTEEEEEE
T ss_pred eEEEEeeccccCC------CCCE--EEEEechhhcChh------HHHHHHHHHHHhcCCCcEEEEE
Confidence 3333333222222 1222 2233457777532 256778877 678999887764
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=60.67 E-value=98 Score=32.72 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=55.5
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEE
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEF 342 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 342 (536)
+|++.+...+-=.|+|+|.|.|. ++..++.+ |+ . +++|||.+.. .+.. -+...+++.. .-...+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~-~-~v~GiDpS~~------ml~q-~~~~~~~~~~-~~~v~~ 175 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA-K-SLVGIDPTVL------FLCQ-FEAVRKLLDN-DKRAIL 175 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC-C-EEEEEcCCHH------HHHH-HHHHHHHhcc-CCCeEE
Confidence 34554433333489999999996 33444443 33 2 7899997642 1221 1222222211 112333
Q ss_pred EEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 009376 343 HAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVE 406 (536)
Q Consensus 343 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvE 406 (536)
... ..+++... ..=++| -|+..|||+++ +.+.+-..-+.|+|.-.++++
T Consensus 176 ~~~--~ie~lp~~----~~FD~V--~s~gvL~H~~d-------p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 176 EPL--GIEQLHEL----YAFDTV--FSMGVLYHRKS-------PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EEC--CHHHCCCC----CCcCEE--EEcchhhccCC-------HHHHHHHHHHhcCCCCEEEEE
Confidence 222 22222111 111233 34456888754 445555555779998766654
No 53
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=60.14 E-value=28 Score=35.58 Aligned_cols=110 Identities=28% Similarity=0.336 Sum_probs=67.9
Q ss_pred cccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeec
Q 009376 268 MKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANM 347 (536)
Q Consensus 268 ~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~ 347 (536)
+.-+.---|+|+|.|-|.+=-- |+.|= |--.|||||.+.. .|++. +.......|..-..
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTel----L~~Rw---P~A~i~GiDsS~~------Mla~A--------a~rlp~~~f~~aDl 84 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTEL----LARRW---PDAVITGIDSSPA------MLAKA--------AQRLPDATFEEADL 84 (257)
T ss_pred CCccccceeeecCCCCCHHHHH----HHHhC---CCCeEeeccCCHH------HHHHH--------HHhCCCCceecccH
Confidence 3445556789999999977544 44454 5678999998752 23333 33344455533222
Q ss_pred CCccccccCccc-cCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEecCCCCCCC
Q 009376 348 SGYDVQLENLRV-QPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTA 414 (536)
Q Consensus 348 ~~~ev~~~~L~i-~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvEqEan~N~~ 414 (536)
. .+.- .+-..|.-|. .||-+|| |-+.|-+.+-.|.|.-+.-|-.-.|+..+
T Consensus 85 ~-------~w~p~~~~dllfaNA--vlqWlpd-------H~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 85 R-------TWKPEQPTDLLFANA--VLQWLPD-------HPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred h-------hcCCCCccchhhhhh--hhhhccc-------cHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 1 1111 1223455565 4567776 45778899999999999988766665543
No 54
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=59.07 E-value=73 Score=33.85 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=86.7
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-EE
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-FE 341 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-Fe 341 (536)
.|..++. ....|||||.|.|..=..||++|..+ +. ..+-.+||-+.+ .|+++.++|. .-..| .+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS~~------~L~~a~~~L~----~~~~p~l~ 133 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVSRS------ELQRTLAELP----LGNFSHVR 133 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECCHH------HHHHHHHhhh----hccCCCeE
Confidence 4555553 23379999999999999999999732 22 367789998754 4888888886 12345 78
Q ss_pred EEEeecCCcc-cc-ccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHh--cCCcEEEEEecCCCC------
Q 009376 342 FHAANMSGYD-VQ-LENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKR--LSPKVVTLVEQESNT------ 411 (536)
Q Consensus 342 F~~V~~~~~e-v~-~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~Vks--L~PkvvtlvEqEan~------ 411 (536)
+++|..+-.+ +. +..-.....-.++.-.--.+.++..+ ....||+.++. |+|.=..|+=-|...
T Consensus 134 v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~------ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~ 207 (319)
T TIGR03439 134 CAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRP------EAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVL 207 (319)
T ss_pred EEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHH------HHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHH
Confidence 8887664322 11 11101111122333333345555321 23579999977 899766666444432
Q ss_pred ---CC-CCchHHH-HHHHHHHHHHHHh
Q 009376 412 ---NT-AAFYPRF-LEALNYYTAMFES 433 (536)
Q Consensus 412 ---N~-~~F~~RF-~EaL~yYsAlFDS 433 (536)
|. .....+| .+.|.+--..++.
T Consensus 208 ~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 208 RAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 22 2333333 4556666666554
No 55
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=58.46 E-value=77 Score=30.65 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=51.9
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCcccc-
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQ- 353 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~- 353 (536)
+|+|+|.+.|. +...++.+- |..++|||+.+.. .++...+++ +..|+.-....+..+..+..
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~------~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~ 64 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPE------QAEVGRERI----RALGLQGRIRIFYRDSAKDPF 64 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHHHHH----HhcCCCcceEEEecccccCCC
Confidence 68999988885 334455443 3468999987532 233343333 34455433332322221110
Q ss_pred ccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 009376 354 LENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLV 405 (536)
Q Consensus 354 ~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtlv 405 (536)
...+ +. |-+...+||+++ .+.+|+.+ +.|+|.-.+++
T Consensus 65 ~~~f-----D~--I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 65 PDTY-----DL--VFGFEVIHHIKD--------KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCC-----CE--eehHHHHHhCCC--------HHHHHHHHHHHcCCCCEEEE
Confidence 1111 22 234456788854 34566666 56899866644
No 56
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=56.59 E-value=1.8e+02 Score=28.94 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=22.7
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCC
Q 009376 273 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSIS 314 (536)
Q Consensus 273 rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s 314 (536)
.-.|+|.|.|.|. -+..||.+ -..+||||.+..
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-----G~~V~avD~s~~ 70 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-----GHEVLGVELSEL 70 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-----CCeEEEEccCHH
Confidence 3478999988882 23445654 258999998753
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=55.94 E-value=1e+02 Score=33.31 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEE
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEF 342 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 342 (536)
.|++.+.-...=+|+|+|.|.|. +...||.+.+ .++|||+.+.. .++.+.++. + ++.++|
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~------~l~~A~~~~----~--~l~v~~ 217 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAE------QQKLAQERC----A--GLPVEI 217 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHH------HHHHHHHHh----c--cCeEEE
Confidence 45555443344589999987775 4445555543 48999997643 244444443 1 334444
Q ss_pred EEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 343 HAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 343 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
.. .+..++ . ..=+.|+ +...++|+++. + .+.+++.+ +-|+|.-.+++.
T Consensus 218 ~~--~D~~~l-----~-~~fD~Iv--s~~~~ehvg~~-----~-~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 218 RL--QDYRDL-----N-GQFDRIV--SVGMFEHVGPK-----N-YRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EE--Cchhhc-----C-CCCCEEE--EeCchhhCChH-----H-HHHHHHHHHHHcCCCcEEEEE
Confidence 32 111111 1 0112332 33467887542 2 23455544 678998776653
No 58
>PRK06922 hypothetical protein; Provisional
Probab=53.25 E-value=1.1e+02 Score=35.92 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=57.5
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCcccc
Q 009376 274 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQ 353 (536)
Q Consensus 274 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~ 353 (536)
-.|+|+|.|.|. +...|+.+. |..++||||.+.. .++.+.+++ +..|.+++|. ..+..++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~------MLe~Ararl----~~~g~~ie~I--~gDa~dLp 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISEN------VIDTLKKKK----QNEGRSWNVI--KGDAINLS 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHh----hhcCCCeEEE--EcchHhCc
Confidence 479999999984 345566552 5689999998753 244444433 2335555442 22221110
Q ss_pred ccCccccCCceEEEeeccccCCCCC----CC--ccccchHHHHHH-HHHhcCCcEEEEE
Q 009376 354 LENLRVQPGEAVAVNFAFMLHHVPD----ES--VSTENYRDRLLM-LVKRLSPKVVTLV 405 (536)
Q Consensus 354 ~~~L~i~~gEaLaVN~~~~LH~l~d----es--v~~~n~rd~~L~-~VksL~Pkvvtlv 405 (536)
. ...++.+=+|-+.+.+|++.+ .. ....+ ...+|+ ..+.|+|.-.+++
T Consensus 481 -~--~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~ed-l~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 481 -S--SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEV-IKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred -c--ccCCCCEEEEEEchHHHhhhhhcccccccccHHH-HHHHHHHHHHHcCCCcEEEE
Confidence 0 123344444445567787642 11 11122 334454 4589999755543
No 59
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=52.07 E-value=1.4e+02 Score=27.90 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=28.3
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
.|++.+.-...=+|+|+|.|.|. |...|+.| + -++|+|+-+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~ 45 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDP 45 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCH
Confidence 45666653333489999999986 44455555 2 3899999764
No 60
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=51.42 E-value=2.2e+02 Score=28.05 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=57.5
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-EEEEEeecCCcccc
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-FEFHAANMSGYDVQ 353 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev~ 353 (536)
.|+|++.|.|. --|.+|+.. . -++|+|+..... ++.+.+. ++..|+. .+| +..+..+.
T Consensus 56 ~vLDl~~GsG~---l~l~~lsr~---a--~~V~~vE~~~~a------~~~a~~N----l~~~~~~~v~~--~~~D~~~~- 114 (199)
T PRK10909 56 RCLDCFAGSGA---LGLEALSRY---A--AGATLLEMDRAV------AQQLIKN----LATLKAGNARV--VNTNALSF- 114 (199)
T ss_pred EEEEcCCCccH---HHHHHHHcC---C--CEEEEEECCHHH------HHHHHHH----HHHhCCCcEEE--EEchHHHH-
Confidence 68999998883 223455532 1 389999865432 3333333 3444543 333 22222111
Q ss_pred ccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 009376 354 LENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKR---LSPKVVTLVEQESNTN 412 (536)
Q Consensus 354 ~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~Vks---L~PkvvtlvEqEan~N 412 (536)
.... -.+=+.|++|=+|. .+-...++..|.. |.|+-+++||....++
T Consensus 115 l~~~-~~~fDlV~~DPPy~-----------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 115 LAQP-GTPHNVVFVDPPFR-----------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred Hhhc-CCCceEEEECCCCC-----------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 0001 11236788886653 1223567788877 6999999999766543
No 61
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=50.10 E-value=1.7e+02 Score=28.16 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=50.3
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC--cEEEEEeecCC
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV--PFEFHAANMSG 349 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv--pFeF~~V~~~~ 349 (536)
+.-.|+|+|.|.|.- ...|+.+ + .++||||.+.. .++...+++ ...++ ...|.....
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~~------~i~~a~~~~----~~~~~~~~i~~~~~d~-- 121 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISPQ------MVEEARERA----PEAGLAGNITFEVGDL-- 121 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCHH------HHHHHHHHH----HhcCCccCcEEEEcCc--
Confidence 446899999998853 3344443 2 24999998643 244444443 23344 344443221
Q ss_pred ccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhc-CCcEEEE
Q 009376 350 YDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRL-SPKVVTL 404 (536)
Q Consensus 350 ~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL-~Pkvvtl 404 (536)
... .. .=+.++ +...|||.+++ ....+++.+.++ ++.+++.
T Consensus 122 ~~~-~~-----~fD~v~--~~~~l~~~~~~------~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESL-LG-----RFDTVV--CLDVLIHYPQE------DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhc-cC-----CcCEEE--EcchhhcCCHH------HHHHHHHHHHhhcCCeEEEE
Confidence 110 01 112233 33457887653 245667767655 4445443
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=49.34 E-value=2.1e+02 Score=27.75 Aligned_cols=112 Identities=16% Similarity=0.204 Sum_probs=55.8
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC-cEEEEEeecCC-
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV-PFEFHAANMSG- 349 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv-pFeF~~V~~~~- 349 (536)
+.-.|+|+|.|.|.-...|.+.+ |..++||||.+.. .++.+.+++ +..++ .++|.. .+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-------p~~~v~gVD~s~~------~i~~a~~~~----~~~~~~~v~~~~--~d~~ 100 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-------PDINFIGIEVHEP------GVGKALKKI----EEEGLTNLRLLC--GDAV 100 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-------CCccEEEEEechH------HHHHHHHHH----HHcCCCCEEEEe--cCHH
Confidence 44579999999997666554422 4568999998753 244443333 33344 344433 222
Q ss_pred ccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 009376 350 YDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLV 405 (536)
Q Consensus 350 ~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtlv 405 (536)
+.+. ..+.-..=+.|++|+....++.+.... .-....+|+.+ +-|+|.-++++
T Consensus 101 ~~l~-~~~~~~~~D~V~~~~~~p~~~~~~~~~--~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 101 EVLL-DMFPDGSLDRIYLNFPDPWPKKRHHKR--RLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHH-HHcCccccceEEEECCCCCCCcccccc--ccCCHHHHHHHHHHcCCCCEEEE
Confidence 1111 001111124566665433222111000 00135677776 58899766654
No 63
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=48.80 E-value=14 Score=39.65 Aligned_cols=89 Identities=25% Similarity=0.417 Sum_probs=50.7
Q ss_pred CCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEE-EEecCCCCCCCCchHHHHHHHHHHHHHHHhhhhcc
Q 009376 361 PGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVT-LVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNL 438 (536)
Q Consensus 361 ~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvt-lvEqEan~N~~~F~~RF~EaL~yYsAlFDSLDa~l 438 (536)
+++++.+ .+.|||+.|+.. -.||+.. ++|.|+-.+ ++|.-.... ..||-+|..
T Consensus 236 ~~daI~m--kWiLhdwtDedc------vkiLknC~~sL~~~GkIiv~E~V~p~e----------------~~~dd~~s~- 290 (342)
T KOG3178|consen 236 KGDAIWM--KWILHDWTDEDC------VKILKNCKKSLPPGGKIIVVENVTPEE----------------DKFDDIDSS- 290 (342)
T ss_pred CcCeEEE--EeecccCChHHH------HHHHHHHHHhCCCCCEEEEEeccCCCC----------------CCccccccc-
Confidence 4564444 468999999743 3577766 688998666 555322221 112222222
Q ss_pred CCChHHHHHHHHHHHHHhhhhhhhcc-CCcccccccchhhHHHHHHhCCCcccc
Q 009376 439 ARDHKERINIEQHCLARDVVNIIACE-GPERIERHELLGKWRSRFTMAGFRPYP 491 (536)
Q Consensus 439 pr~~~eR~~vE~~~l~reI~NiVAcE-G~eRvERhE~~~~Wr~r~~~AGF~~~p 491 (536)
+..+ .++.=.+-|+ |.||+ ..+|+.-+..+||..+.
T Consensus 291 -------v~~~-----~d~lm~~~~~~Gkert-----~~e~q~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 291 -------VTRD-----MDLLMLTQTSGGKERT-----LKEFQALLPEEGFPVCM 327 (342)
T ss_pred -------eeeh-----hHHHHHHHhccceecc-----HHHHHhcchhhcCceeE
Confidence 1111 2222234466 77664 46899999999997554
No 64
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=48.57 E-value=2.7e+02 Score=27.87 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=50.7
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-EEEEEeecCCccc
Q 009376 274 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-FEFHAANMSGYDV 352 (536)
Q Consensus 274 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev 352 (536)
=+|+|+|.|.|.-...+ +... | +.-+|||||.+.. .++.+.++ ++..|++ .+|.. .+.++
T Consensus 79 ~~VLDiG~G~G~~~~~~----a~~~-g-~~~~v~gvD~s~~------~l~~A~~~----~~~~g~~~v~~~~--~d~~~- 139 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLA----ARRV-G-PTGKVIGVDMTPE------MLAKARAN----ARKAGYTNVEFRL--GEIEA- 139 (272)
T ss_pred CEEEEeCCCCCHHHHHH----HHHh-C-CCCEEEEECCCHH------HHHHHHHH----HHHcCCCCEEEEE--cchhh-
Confidence 38899999887422212 2221 1 4458999997642 24444333 3344552 33322 22222
Q ss_pred cccCccccCC--ceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 009376 353 QLENLRVQPG--EAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLV 405 (536)
Q Consensus 353 ~~~~L~i~~g--EaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkvvtlv 405 (536)
+.+..+ +.|+.|+ .+||.++ ....|=...+-|+|.-.+++
T Consensus 140 ----l~~~~~~fD~Vi~~~--v~~~~~d-------~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 140 ----LPVADNSVDVIISNC--VINLSPD-------KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred ----CCCCCCceeEEEEcC--cccCCCC-------HHHHHHHHHHHcCCCcEEEE
Confidence 222223 3455565 4577654 22344455678889865543
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=45.14 E-value=2.6e+02 Score=26.11 Aligned_cols=104 Identities=12% Similarity=0.079 Sum_probs=54.0
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCccccc
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQL 354 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~ 354 (536)
.|+|+|.|.|. +...++.+ ++ ++|||+.+.. .++.+.+++. ..++..+|.. .+..+...
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~------~~~~a~~~~~----~~~~~~~~~~--~d~~~~~~ 80 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPF------AVKELRENAK----LNNVGLDVVM--TDLFKGVR 80 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHH------HHHHHHHHHH----HcCCceEEEE--cccccccC
Confidence 49999999994 44555554 33 8999987642 2445544442 3455544432 22222111
Q ss_pred cCccccCCceEEEeeccccCCCCCCCcc-------------ccchHHHHHHHH-HhcCCcEEEEEe
Q 009376 355 ENLRVQPGEAVAVNFAFMLHHVPDESVS-------------TENYRDRLLMLV-KRLSPKVVTLVE 406 (536)
Q Consensus 355 ~~L~i~~gEaLaVN~~~~LH~l~desv~-------------~~n~rd~~L~~V-ksL~PkvvtlvE 406 (536)
..=+.|+.|.++ |+..+.... .......+|+.+ +-|+|.-.+++.
T Consensus 81 -----~~fD~Vi~n~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 81 -----GKFDVILFNPPY--LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred -----CcccEEEECCCC--CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 123567777654 444331100 001134566655 678886655443
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=44.77 E-value=1e+02 Score=33.45 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=63.3
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEE
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFE 341 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 341 (536)
..+++.+.....=.|+|+|.|.|. +--.|+.+. |..+||+||.+.. .++.+.+++......-.-.++
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~------Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPM------AVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHHHHcCcccCceEE
Confidence 345555543222279999999997 333555553 6789999998753 355555554322110001344
Q ss_pred EEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHH-HHHhcCCcEEEEEe
Q 009376 342 FHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLM-LVKRLSPKVVTLVE 406 (536)
Q Consensus 342 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~-~VksL~PkvvtlvE 406 (536)
|.. .+..+ .+.-..=+.|+.|-+|...|-.. .+-..++++ .-+.|+|.-...++
T Consensus 285 ~~~--~D~l~----~~~~~~fDlIlsNPPfh~~~~~~-----~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 285 FMI--NNALS----GVEPFRFNAVLCNPPFHQQHALT-----DNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEE--ccccc----cCCCCCEEEEEECcCcccCccCC-----HHHHHHHHHHHHHhcccCCEEEEE
Confidence 432 22111 11111125788888875433211 112234554 44688998877665
No 67
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=43.59 E-value=1.2e+02 Score=30.83 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=38.5
Q ss_pred hcCCcchhhh-hhhcHHHHHh----cccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 248 EVCPYFKFGY-MSANGAIAEA----MKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 248 e~~P~~kFa~-~tANqAILEA----~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
.+.|=-++|+ |..|..|++. +.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+.+.
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d~ 74 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEIDR 74 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECCH
Confidence 4567777777 6667666544 333445689999999884 55566666 22 899999764
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=42.99 E-value=1.4e+02 Score=28.65 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=23.3
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 274 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 274 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
--|+|+|.|.|.=.. .||.+. |...++||+...
T Consensus 18 ~~ilDiGcG~G~~~~----~la~~~---p~~~v~gvD~~~ 50 (194)
T TIGR00091 18 PLHLEIGCGKGRFLI----DMAKQN---PDKNFLGIEIHT 50 (194)
T ss_pred ceEEEeCCCccHHHH----HHHHhC---CCCCEEEEEeeH
Confidence 469999999986444 444442 567899999764
No 69
>PRK14968 putative methyltransferase; Provisional
Probab=42.99 E-value=2.7e+02 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=23.6
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 273 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 273 rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
.-.|+|+|.+.|. +...|+.+ + .+|||++.+.
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s~ 55 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDINP 55 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh-c----ceEEEEECCH
Confidence 3469999999998 45556665 2 5899999654
No 70
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=42.63 E-value=48 Score=24.65 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=25.0
Q ss_pred ceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEec
Q 009376 363 EAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQ 407 (536)
Q Consensus 363 EaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvEq 407 (536)
|.+-|||...--++. ....++.++.+|+.++|+-+++|-.
T Consensus 1 e~i~v~a~v~~~~fS-----gHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 1 EMIPVRARVEQIDFS-----GHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CEEE--SEEEESGCS-----SS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred CEEEeEEEEEEEeec-----CCCCHHHHHHHHHhcCCCEEEEecC
Confidence 345666633322232 2345789999999999999999853
No 71
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=42.42 E-value=3.3e+02 Score=26.43 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=53.0
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-EEEEEeecCCccc
Q 009376 274 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-FEFHAANMSGYDV 352 (536)
Q Consensus 274 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev 352 (536)
-.|+|+|.|.|. .+++ +|.+. |..++||||.+.. .++.+ .+.++..|++ ++|... +..++
T Consensus 47 ~~VLDiGcGtG~--~al~--la~~~---~~~~V~giD~s~~------~l~~A----~~~~~~~~l~~i~~~~~--d~~~~ 107 (187)
T PRK00107 47 ERVLDVGSGAGF--PGIP--LAIAR---PELKVTLVDSLGK------KIAFL----REVAAELGLKNVTVVHG--RAEEF 107 (187)
T ss_pred CeEEEEcCCCCH--HHHH--HHHHC---CCCeEEEEeCcHH------HHHHH----HHHHHHcCCCCEEEEec--cHhhC
Confidence 468999998883 2322 22221 3469999997643 23333 3445556764 555433 33332
Q ss_pred cccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHH-HHhcCCcEEEEEe
Q 009376 353 QLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLML-VKRLSPKVVTLVE 406 (536)
Q Consensus 353 ~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~-VksL~PkvvtlvE 406 (536)
.. -.+-+.|+.|+ + .+ .+.+++. .+.|+|.-.+++.
T Consensus 108 ~~----~~~fDlV~~~~------~-------~~-~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 108 GQ----EEKFDVVTSRA------V-------AS-LSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CC----CCCccEEEEcc------c-------cC-HHHHHHHHHHhcCCCeEEEEE
Confidence 21 12345666553 1 11 3456665 4899999888766
No 72
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=41.31 E-value=3.3e+02 Score=26.10 Aligned_cols=100 Identities=21% Similarity=0.349 Sum_probs=50.4
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC-cEEEEEeecCCcc
Q 009376 273 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV-PFEFHAANMSGYD 351 (536)
Q Consensus 273 rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv-pFeF~~V~~~~~e 351 (536)
...|+|+|.+.|. +...|+.. + .++|+|+.+.. .++...+++. ..++ .+.|..... .+
T Consensus 46 ~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~------~~~~a~~~~~----~~~~~~~~~~~~d~--~~ 104 (224)
T TIGR01983 46 GLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEE------NIEVAKLHAK----KDPLLKIEYRCTSV--ED 104 (224)
T ss_pred CCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHH------HHHHHHHHHH----HcCCCceEEEeCCH--HH
Confidence 5689999998884 33344432 2 24999987542 2344443332 3444 355533221 11
Q ss_pred ccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 009376 352 VQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLV 405 (536)
Q Consensus 352 v~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtlv 405 (536)
..... -.+-+.|+. ...|||..+ + ..+|+.+ +.|+|.-++++
T Consensus 105 ~~~~~--~~~~D~i~~--~~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 105 LAEKG--AKSFDVVTC--MEVLEHVPD-------P-QAFIRACAQLLKPGGILFF 147 (224)
T ss_pred hhcCC--CCCccEEEe--hhHHHhCCC-------H-HHHHHHHHHhcCCCcEEEE
Confidence 11111 112344443 345777753 2 3455554 67788866654
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=38.68 E-value=3.1e+02 Score=26.64 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=42.5
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-EEEEEeecCCcc
Q 009376 273 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-FEFHAANMSGYD 351 (536)
Q Consensus 273 rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~e 351 (536)
..+|+|+|.|.|. +.-.|+.+. |..++|||+.+.. .++.+. +.++..|++ ++|.. .+..+
T Consensus 88 ~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~------~~~~a~----~~~~~~~~~~~~~~~--~d~~~ 148 (251)
T TIGR03534 88 PLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPE------ALAVAR----KNAARLGLDNVTFLQ--SDWFE 148 (251)
T ss_pred CCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHH----HHHHHcCCCeEEEEE--Cchhc
Confidence 3589999999983 333444432 4569999997542 233333 334456665 44432 22211
Q ss_pred ccccCccccCCceEEEeecccc
Q 009376 352 VQLENLRVQPGEAVAVNFAFML 373 (536)
Q Consensus 352 v~~~~L~i~~gEaLaVN~~~~L 373 (536)
.+.-..-+.|+.|-++..
T Consensus 149 ----~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 149 ----PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred ----cCcCCceeEEEECCCCCc
Confidence 111123467888877653
No 74
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=38.67 E-value=2.8e+02 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=22.2
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCC
Q 009376 274 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSIS 314 (536)
Q Consensus 274 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s 314 (536)
-.|+|.|.|.|- =...||.+ | ..+||||.+..
T Consensus 36 ~rvLd~GCG~G~----da~~LA~~-G----~~V~gvD~S~~ 67 (213)
T TIGR03840 36 ARVFVPLCGKSL----DLAWLAEQ-G----HRVLGVELSEI 67 (213)
T ss_pred CeEEEeCCCchh----HHHHHHhC-C----CeEEEEeCCHH
Confidence 489999999883 22345554 2 58999998754
No 75
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=38.28 E-value=1.1e+02 Score=29.97 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=69.4
Q ss_pred CeeEEEecccC---CccchHHHHHHHhcCCCCCCeEEE------EeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEE
Q 009376 272 DRVHIIDFQIG---QGSQWITLIQAFAARPGGPPHIRI------TGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEF 342 (536)
Q Consensus 272 ~rVHIIDf~I~---~G~QWpsLiqaLA~R~gGPP~LRI------TgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 342 (536)
.+|+||.|=-+ -+-.=.++|.+|+.+ .+.+ |||.... ....++.-+.+|+++.++.|-|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd-------~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADD-------AIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECcc-------chhhHHHHHHHHHHHhcccCCc
Confidence 47899998543 335667899999655 2666 8886432 3567888999999999988877
Q ss_pred EEeecCCccccccCccccCC-ce-EEEeeccccCCCCCCCccccchHHHHHHHHHhc
Q 009376 343 HAANMSGYDVQLENLRVQPG-EA-VAVNFAFMLHHVPDESVSTENYRDRLLMLVKRL 397 (536)
Q Consensus 343 ~~V~~~~~ev~~~~L~i~~g-Ea-LaVN~~~~LH~l~desv~~~n~rd~~L~~VksL 397 (536)
-++..+........+++..- ++ .+||-.-.+......... ....+.++..|++|
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~-~ee~e~~~~li~~l 182 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALS-DSDIQTVISLVNGL 182 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 77776543322334455432 56 577765544433222221 22234566666654
No 76
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=37.53 E-value=1.4e+02 Score=26.31 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=24.7
Q ss_pred CCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEE
Q 009376 361 PGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVT 403 (536)
Q Consensus 361 ~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkvvt 403 (536)
.+..-+...++..| +...++...|+.|+|+-|+
T Consensus 71 ~~~~~~~~VPYSeH----------SSf~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 71 RGNVRIYRVPYSEH----------SSFSELKEFVSFLKPKKII 103 (110)
T ss_pred CCCceEEEEecccC----------CCHHHHHHHHHhcCCcEEE
Confidence 35556666667666 2356899999999999887
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=33.55 E-value=4.1e+02 Score=28.11 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=57.5
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC--cEEEEEeecCCccc
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV--PFEFHAANMSGYDV 352 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv--pFeF~~V~~~~~ev 352 (536)
.|+|.|.|.|-=|..++.+-. .|.-++||||.+.. ..+..+++.+ +..|+ ..+|+...... +
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d~~-------ai~~Ar~~~~--~~~gL~~rV~F~~~Da~~--~ 189 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDIDPS-------ANDVARRLVS--SDPDLSKRMFFHTADVMD--V 189 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCCHH-------HHHHHHHHhh--hccCccCCcEEEECchhh--c
Confidence 388999998866666555432 24459999997653 3334444432 12333 35665533211 1
Q ss_pred cccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEec
Q 009376 353 QLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQ 407 (536)
Q Consensus 353 ~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvEq 407 (536)
... ..+=+ +|+.. .||++..+ .+.+.|-+..+.|+|.-++++.-
T Consensus 190 ~~~---l~~FD-lVF~~--ALi~~dk~-----~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 190 TES---LKEYD-VVFLA--ALVGMDKE-----EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccc---cCCcC-EEEEe--cccccccc-----cHHHHHHHHHHhcCCCcEEEEec
Confidence 000 11112 33332 88888432 33444444456799999998864
No 78
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.71 E-value=28 Score=37.30 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=25.3
Q ss_pred ceEEEeeccccCCCCCCCccccchHH-HHHHHHHhcCCcEEEEE
Q 009376 363 EAVAVNFAFMLHHVPDESVSTENYRD-RLLMLVKRLSPKVVTLV 405 (536)
Q Consensus 363 EaLaVN~~~~LH~l~desv~~~n~rd-~~L~~VksL~Pkvvtlv 405 (536)
|--.||.++ .+...|++.. ...+ .++-.++..+|++|++.
T Consensus 206 ~g~~vNiPL-p~g~~d~~y~--~a~~~~v~~~~~~f~Pdlvivs 246 (340)
T COG0123 206 EGNNVNIPL-PPGTGDDSYL--EALEEIVLPLLEEFKPDLVIVS 246 (340)
T ss_pred ccceEeeec-CCCCCcHHHH--HHHHHHHHHHHHhcCCCEEEEe
Confidence 567888876 4444444321 1123 36778889999999875
No 79
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=32.30 E-value=54 Score=34.03 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=21.2
Q ss_pred ccCCeeEEEecccCCccchHHHHHHHhc
Q 009376 269 KDEDRVHIIDFQIGQGSQWITLIQAFAA 296 (536)
Q Consensus 269 ~ge~rVHIIDf~I~~G~QWpsLiqaLA~ 296 (536)
.|.+.+||||+|-+.+.+ ..+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 478999999998867777 556777766
No 80
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=32.14 E-value=4.7e+02 Score=28.62 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=56.7
Q ss_pred CCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-EEEEEeecCC
Q 009376 271 EDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP-FEFHAANMSG 349 (536)
Q Consensus 271 e~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~ 349 (536)
.+.-+|+|++.|-|. +--.||.+- -+++||+.+.. .++.+.++ |+..|+. .+|..- +.
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~------al~~A~~n----~~~~~~~~v~~~~~--d~ 354 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEA------MVERAREN----ARRNGLDNVTFYHA--NL 354 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHH------HHHHHHHH----HHHcCCCceEEEEe--Ch
Confidence 344589999999995 223455542 38999997653 24444433 3344553 445433 22
Q ss_pred ccccccCccc--cCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 009376 350 YDVQLENLRV--QPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVE 406 (536)
Q Consensus 350 ~ev~~~~L~i--~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvE 406 (536)
.+. ...+.. ..=++|++|=+.. ..+.++..+.+++|+-++.|.
T Consensus 355 ~~~-l~~~~~~~~~fD~Vi~dPPr~-------------g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 355 EED-FTDQPWALGGFDKVLLDPPRA-------------GAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred HHh-hhhhhhhcCCCCEEEECcCCc-------------ChHHHHHHHHhcCCCeEEEEE
Confidence 211 011111 1125676663321 134677888889999999885
No 81
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=31.58 E-value=93 Score=26.42 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=22.4
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
+|+|+|.|.|.. ...|+.+. |..++||||.+.
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~ 53 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNP 53 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCH
Confidence 899999988754 33334442 347899999764
No 82
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=30.35 E-value=3.1e+02 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=23.4
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
...+|+|+|.+.|.-... |+.+-++ .++|+||.+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~----La~~~~~---~~VtgVD~S~ 147 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLG----IVKHVDA---KNVTILDQSP 147 (340)
T ss_pred CCCEEEEEecCCcHHHHH----HHHHCCC---CEEEEEECCH
Confidence 456899999999874433 3333221 5899999754
No 83
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=29.81 E-value=3.9e+02 Score=23.81 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHhcCCcEE--EEEeecCCccccccCc-----cccCCc--eEEEeeccccCCCCCCCccccchHHHHH
Q 009376 321 GLGIVGKRLSKLAEQFKVPFE--FHAANMSGYDVQLENL-----RVQPGE--AVAVNFAFMLHHVPDESVSTENYRDRLL 391 (536)
Q Consensus 321 ~L~~tG~rL~~fA~s~gvpFe--F~~V~~~~~ev~~~~L-----~i~~gE--aLaVN~~~~LH~l~desv~~~n~rd~~L 391 (536)
.++.--+.|.+||+..|.++. |.-...++...+...| .++.|+ +|+|--.-+|-+-+ .....++
T Consensus 16 s~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~-------~~~~~~~ 88 (148)
T smart00857 16 SLERQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSL-------RDLLALL 88 (148)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcH-------HHHHHHH
Confidence 466667789999999998763 3333222222222222 256788 78877544433321 1234678
Q ss_pred HHHHhcCCcEEEEEecCCCCCCCCchHHHHHHHHHHHHHH
Q 009376 392 MLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMF 431 (536)
Q Consensus 392 ~~VksL~PkvvtlvEqEan~N~~~F~~RF~EaL~yYsAlF 431 (536)
..++..+=+|+++-|.-.+.+ ....++...+....+-+
T Consensus 89 ~~l~~~gi~l~~~~~~~~~~~--~~~~~~~~~i~~~~a~~ 126 (148)
T smart00857 89 ELLEKKGVRLVSVTEGIEDTS--TPAGRLMLDILAALAEF 126 (148)
T ss_pred HHHHHCCCEEEECcCCCCCCC--CHHHHHHHHHHHHHHHH
Confidence 888888877766655432333 33445554444333333
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=29.74 E-value=4e+02 Score=25.80 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=47.4
Q ss_pred HHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc--E
Q 009376 263 AIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP--F 340 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp--F 340 (536)
.++++++-.+.-+|+|+|-|.|..=..|.+.+ . +.-+++||+.... .++.+.+++. ..|+. .
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~-----~~g~V~~iD~~~~------~~~~a~~~l~----~~~~~~~v 126 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-E-----RRGKVYTVEIVKE------LAIYAAQNIE----RLGYWGVV 126 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-C-----CCCEEEEEeCCHH------HHHHHHHHHH----HcCCCCcE
Confidence 35566654444579999988876443333333 1 1237999997642 2444544443 34553 4
Q ss_pred EEEEeecCCccccccCccccCCceEEEeeccccCCCC
Q 009376 341 EFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVP 377 (536)
Q Consensus 341 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~ 377 (536)
+|.. .+..+.-+ ...+=+++++++. +++++
T Consensus 127 ~~~~--~d~~~~~~---~~~~fD~Ii~~~~--~~~~~ 156 (205)
T PRK13944 127 EVYH--GDGKRGLE---KHAPFDAIIVTAA--ASTIP 156 (205)
T ss_pred EEEE--CCcccCCc---cCCCccEEEEccC--cchhh
Confidence 4433 22221101 1134467777764 34554
No 85
>PTZ00063 histone deacetylase; Provisional
Probab=28.68 E-value=38 Score=37.59 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=74.1
Q ss_pred HHHHhcccCCeeEEEecccC--CccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcE
Q 009376 263 AIAEAMKDEDRVHIIDFQIG--QGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPF 340 (536)
Q Consensus 263 AILEA~~ge~rVHIIDf~I~--~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 340 (536)
||+++.+..+||=|||||+- .|+|+.- ... |.+-.-.+......+...+...++|..-.+ .-.+|||+
T Consensus 156 Ai~~L~~~~~RVliID~DvHHGdGtqe~F-----~~~----~~VltvS~H~~~~ffPgtG~~~e~G~g~G~-g~~vNvPL 225 (436)
T PTZ00063 156 GILELLKYHARVMYIDIDVHHGDGVEEAF-----YVT----HRVMTVSFHKFGDFFPGTGDVTDIGVAQGK-YYSVNVPL 225 (436)
T ss_pred HHHHHHHhCCeEEEEeCCCCCCcchHHHh-----ccC----CCeEEEEeccCCCcCCCCCCccccCCCCCC-ceEEEeeC
Confidence 45566666689999999995 4578653 222 333333343221111222345555421100 01244554
Q ss_pred EEEEeecCCcc----ccc---cCccccCCceEEEeeccccCCC---CCCCccccchHHHHHHHHHhcCCcEEEEEecCCC
Q 009376 341 EFHAANMSGYD----VQL---ENLRVQPGEAVAVNFAFMLHHV---PDESVSTENYRDRLLMLVKRLSPKVVTLVEQESN 410 (536)
Q Consensus 341 eF~~V~~~~~e----v~~---~~L~i~~gEaLaVN~~~~LH~l---~desv~~~n~rd~~L~~VksL~PkvvtlvEqEan 410 (536)
.=. +..++ ++. ..+..-.=|+|+|.|-+=-|.- ..-.++.... ..+++.+++++..++++.|. .
T Consensus 226 ~~G---~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~-~~~~~~~~~~~~pil~l~gG--G 299 (436)
T PTZ00063 226 NDG---IDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGH-AACVEFVRSLNIPLLVLGGG--G 299 (436)
T ss_pred CCC---CCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHH-HHHHHHHHhcCCCEEEEeCc--c
Confidence 310 00011 000 0011112368888886654432 1112222333 45788899999888888763 3
Q ss_pred CCCCCchHHHHHHHHHHHHHH
Q 009376 411 TNTAAFYPRFLEALNYYTAMF 431 (536)
Q Consensus 411 ~N~~~F~~RF~EaL~yYsAlF 431 (536)
.| +.....++.|.+++.
T Consensus 300 Y~----~~~lar~w~~~t~~~ 316 (436)
T PTZ00063 300 YT----IRNVARCWAYETGVI 316 (436)
T ss_pred CC----chHHHHHHHHHHHHH
Confidence 33 245667778877776
No 86
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=28.23 E-value=31 Score=37.43 Aligned_cols=15 Identities=47% Similarity=0.851 Sum_probs=12.4
Q ss_pred cccCCeeEEEecccC
Q 009376 268 MKDEDRVHIIDFQIG 282 (536)
Q Consensus 268 ~~ge~rVHIIDf~I~ 282 (536)
-+.+..|||||||++
T Consensus 162 ~k~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 162 TKDANVIHIIDFGMA 176 (449)
T ss_pred CCCCceEEEEeccch
Confidence 356778999999985
No 87
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=27.82 E-value=3.1e+02 Score=30.32 Aligned_cols=143 Identities=18% Similarity=0.144 Sum_probs=74.2
Q ss_pred hhhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhc--------CCCCCCeEEEEeecCCCCcccCCChHHHHHHHH
Q 009376 258 MSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAA--------RPGGPPHIRITGIDDSISAYARGGGLGIVGKRL 329 (536)
Q Consensus 258 ~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~--------R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL 329 (536)
+.||.. +..-.+|-|||.|+||--==|+=.-+|+. +...|++...-|.-.|+... +..=.--.||
T Consensus 92 ~LaN~~----l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP~~~~---~~~i~~v~rL 164 (398)
T COG1341 92 YLANKL----LARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISPQGFP---GRYIAGVARL 164 (398)
T ss_pred HHHHHH----hhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccCCCCCh---HHHHHHHHHH
Confidence 345643 34345699999999984222211112211 11234555554444443221 1122223677
Q ss_pred HHHHHhcCCcEEEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEecCC
Q 009376 330 SKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQES 409 (536)
Q Consensus 330 ~~fA~s~gvpFeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvEqEa 409 (536)
.++|+.. -+.++||+.=..+ ..+.++-....|...+|.+|+.+|.+
T Consensus 165 ~~~a~~~-------------------------~~~ilIdT~GWi~--------G~~g~elk~~li~~ikP~~Ii~l~~~- 210 (398)
T COG1341 165 VDLAKKE-------------------------ADFILIDTDGWIK--------GWGGLELKRALIDAIKPDLIIALERA- 210 (398)
T ss_pred HHHhhcc-------------------------CCEEEEcCCCcee--------CchHHHHHHHHHhhcCCCEEEEeccc-
Confidence 7777643 2346777644322 23456777888899999999999865
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhhhccCCChHHHHH
Q 009376 410 NTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERIN 447 (536)
Q Consensus 410 n~N~~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eR~~ 447 (536)
|...++.+=.+...| ...-|+..++.-.||..
T Consensus 211 --~~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~ 242 (398)
T COG1341 211 --NELSPLLEGVESIVY----LKVPDAVAPRSREERKE 242 (398)
T ss_pred --cccchhhhcccCceE----EeccccccccChhHHHH
Confidence 333333333333333 23334444555455543
No 88
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=27.51 E-value=4.2e+02 Score=28.28 Aligned_cols=92 Identities=20% Similarity=0.352 Sum_probs=51.8
Q ss_pred HHHhcccC---CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc-
Q 009376 264 IAEAMKDE---DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP- 339 (536)
Q Consensus 264 ILEA~~ge---~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp- 339 (536)
++|++... +.-||.|.|.|-|.-=.+|+..| |.-|+|+||-+.. .+..+++. |+++++.
T Consensus 137 Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------~~~~v~AiD~S~~------Ai~La~eN----~qr~~l~g 199 (328)
T KOG2904|consen 137 VIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------PQCTVTAIDVSKA------AIKLAKEN----AQRLKLSG 199 (328)
T ss_pred HHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------CCceEEEEeccHH------HHHHHHHH----HHHHhhcC
Confidence 34444432 34489999999998877777766 4689999998753 25555554 4444543
Q ss_pred -EEEEEeecCCccccccCccccCCceEEEeeccc
Q 009376 340 -FEFHAANMSGYDVQLENLRVQPGEAVAVNFAFM 372 (536)
Q Consensus 340 -FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~ 372 (536)
|+.+-..+..+-..+..+.-.+=..|+-|=++.
T Consensus 200 ~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 200 RIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYI 233 (328)
T ss_pred ceEEEecccccccccccccccCceeEEecCCCcc
Confidence 444333232221222222223334566665554
No 89
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=27.26 E-value=1.7e+02 Score=29.98 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=48.0
Q ss_pred cCCChHHH-HHHHHHHHHHhhhhhhhccCCccccc-ccchhhHHHHHHhCCCccccCChHHHHHHHHHHHc
Q 009376 438 LARDHKER-INIEQHCLARDVVNIIACEGPERIER-HELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLEN 506 (536)
Q Consensus 438 lpr~~~eR-~~vE~~~l~reI~NiVAcEG~eRvER-hE~~~~Wr~r~~~AGF~~~plS~~~~~qak~LL~~ 506 (536)
++-..++| .++|. -.|+|.|+|+..+.+..-+ +-+-.+=..-|..|||..-|+-+ +..|+...|+.
T Consensus 85 iQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~evlK~ 152 (234)
T COG1500 85 IQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQEVLKA 152 (234)
T ss_pred eeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHHHHHH
Confidence 33344454 45565 5899999999999887655 66667788889999999999865 55677666653
No 90
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=27.25 E-value=8.4e+02 Score=26.55 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=66.7
Q ss_pred hcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc
Q 009376 260 ANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP 339 (536)
Q Consensus 260 ANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp 339 (536)
+-+.+..++.-.+--.|+|++-+.|.--..+.+.+ + .-+|+|+|.+.. .++.+.+++ +.+|+.
T Consensus 226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~---~----~~~v~a~D~~~~------~l~~~~~n~----~r~g~~ 288 (426)
T TIGR00563 226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELA---P----QAQVVALDIHEH------RLKRVYENL----KRLGLT 288 (426)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc---C----CCeEEEEeCCHH------HHHHHHHHH----HHcCCC
Confidence 34555666654444589999999998777666544 1 248999997643 355554444 556887
Q ss_pred EEEEEeecCCccccccCccccCCceEEEeec----cccCCCCCCCccc---------cchHHHHHHHHHhcCCcEEEE
Q 009376 340 FEFHAANMSGYDVQLENLRVQPGEAVAVNFA----FMLHHVPDESVST---------ENYRDRLLMLVKRLSPKVVTL 404 (536)
Q Consensus 340 FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~----~~LH~l~desv~~---------~n~rd~~L~~VksL~Pkvvtl 404 (536)
.++..+..+...... ...-..=+.|.++.+ -.+|+.|+-.-.. .-+++.+-...+-|+|.-.++
T Consensus 289 ~~v~~~~~d~~~~~~-~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lv 365 (426)
T TIGR00563 289 IKAETKDGDGRGPSQ-WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLV 365 (426)
T ss_pred eEEEEeccccccccc-cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 444333322211111 001112246777632 2366666521100 012333344456689965554
No 91
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=27.16 E-value=1.2e+02 Score=29.14 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=44.6
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcc
Q 009376 166 LKHVLIACA-KAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNS 220 (536)
Q Consensus 166 L~~LLl~CA-~AV~~gd~~~A~~lL~~L~~laS~~Gdp~QRLaayF~eAL~aRl~~ 220 (536)
+..+|+.|. ..+..++...|..++..|..+.-|..+-..|+..-|.+||..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 445666665 6677889999999999999998777788899999999999755433
No 92
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=26.97 E-value=5.3e+02 Score=25.74 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 262 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
..|++++...+.=.|+|+|-|.|. |...|+.+. + ++++|+.+.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~ 61 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDP 61 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCH
Confidence 345555544455689999999987 555666553 2 399998754
No 93
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=26.89 E-value=39 Score=28.00 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=21.3
Q ss_pred cchhhHHHHHHhCCCccccC------ChHHHHHHH
Q 009376 473 ELLGKWRSRFTMAGFRPYPL------SSVVNATIK 501 (536)
Q Consensus 473 E~~~~Wr~r~~~AGF~~~pl------S~~~~~qak 501 (536)
|+..+-|.+|+++|++|+.+ ++....+++
T Consensus 3 ~RV~khR~~lRa~GLRPVqiWVPDtr~p~F~~E~r 37 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIWVPDTRRPEFAAECR 37 (65)
T ss_pred HHHHHHHHHHHHcCCCcceeeCCCCCChHHHHHHH
Confidence 45567799999999999987 455545443
No 94
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=26.59 E-value=2.7e+02 Score=29.05 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=25.0
Q ss_pred HHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 264 IAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 264 ILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
|++++.-.+.=.|+|+|-|.|.--. .|+.+. -+++||+-+.
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT~----~Ll~~~-----~~V~avEiD~ 68 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLTE----KLLQLA-----KKVIAIEIDP 68 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHHH----HHHHhC-----CcEEEEECCH
Confidence 3344433333469999999887443 444442 2689998764
No 95
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=26.13 E-value=3.8e+02 Score=26.74 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=50.2
Q ss_pred cccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEee
Q 009376 268 MKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAAN 346 (536)
Q Consensus 268 ~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~ 346 (536)
+.+.+.|=+||=.|.-|.=-..+|++|-..-. -.++-+..|-+-.+ .+-..+..++++.+|+|.+|..+.
T Consensus 118 l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~--------~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 118 LRNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRS--------EEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred hcCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCC--------HHHHHHHHHHHHHcCCcEEEEEee
Confidence 34467999999999999999999999976632 23333444433221 234567888999999999998765
No 96
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=25.66 E-value=2e+02 Score=29.07 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHhcCCcchhhhhhhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 236 SSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 236 ~~ell~a~~~l~e~~P~~kFa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
..+++.+.+.|.+.- ++.--.-..+..|.+.+. ...-+|+|+|.|.|.--..|.+.+... ....++|||.+.
T Consensus 51 ~~~~~~ar~~fl~~g-~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~ 122 (272)
T PRK11088 51 NKEMMQARRAFLDAG-HYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISK 122 (272)
T ss_pred CHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCH
Confidence 456777666665532 222111111222333332 234579999999996444444443211 125799999864
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.07 E-value=5.3e+02 Score=25.57 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=25.0
Q ss_pred cCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 270 DEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 270 ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
..+..+|+|+|.|.|.=-..|...+ |..++||+|.+.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~-------~~~~v~~iDis~ 142 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKER-------PDAEVTAVDISP 142 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHC-------CCCEEEEEECCH
Confidence 3455789999999986333333332 457899999764
No 98
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=24.69 E-value=6.4e+02 Score=25.72 Aligned_cols=54 Identities=28% Similarity=0.492 Sum_probs=33.1
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCc--EEEEE
Q 009376 274 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVP--FEFHA 344 (536)
Q Consensus 274 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp--FeF~~ 344 (536)
.+|+|+|.|.|.--..|.+.+ |..++||+|-+.. .++.+.++ ++..++. ++|..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-------~~~~v~avDis~~------al~~a~~n----~~~~~~~~~v~~~~ 171 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-------PNAEVIAVDISPD------ALAVAEEN----AEKNQLEHRVEFIQ 171 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-------CCCEEEEEECCHH------HHHHHHHH----HHHcCCCCcEEEEE
Confidence 589999999996444443332 3468999997643 24444443 4455664 55543
No 99
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=24.51 E-value=74 Score=32.85 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=18.2
Q ss_pred ccCCeeEEEecccCCccchHHHHHHHhcCC
Q 009376 269 KDEDRVHIIDFQIGQGSQWITLIQAFAARP 298 (536)
Q Consensus 269 ~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~ 298 (536)
.|.+.|||||+ +.+ ++ .+|..+++-.
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 48899999999 455 66 5566665543
No 100
>PTZ00346 histone deacetylase; Provisional
Probab=23.25 E-value=54 Score=36.33 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=75.6
Q ss_pred HHHhcccCCeeEEEecccC--CccchHHHHHHHhcCCCCCCeEEEEeecC-CCCcccCCChHHHHHHHHHHHHHhcCCcE
Q 009376 264 IAEAMKDEDRVHIIDFQIG--QGSQWITLIQAFAARPGGPPHIRITGIDD-SISAYARGGGLGIVGKRLSKLAEQFKVPF 340 (536)
Q Consensus 264 ILEA~~ge~rVHIIDf~I~--~G~QWpsLiqaLA~R~gGPP~LRITgI~~-~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 340 (536)
|+.+.+..+||=|||||+- .|+|.. +... |.+-.-.|.. +...+...+...++|..-.+ .-.+|||+
T Consensus 174 a~~ll~~~~RVliID~DVHHGnGTqei-----F~~d----p~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~-g~~vNVPL 243 (429)
T PTZ00346 174 ILELLKCHDRVLYVDIDMHHGDGVDEA-----FCTS----DRVFTLSLHKFGESFFPGTGHPRDVGYGRGR-YYSMNLAV 243 (429)
T ss_pred HHHHHHcCCeEEEEeCCCCCCchHHHH-----HcCC----CCeEEEEecCCCCCCCCCCCCccccCCCCCc-eeEEeeeC
Confidence 3445555689999999995 567854 3333 3444444542 21222222445555531100 01234443
Q ss_pred EEEEeecCCcc----cc----ccCccccCCceEEEeeccccCCC---CCCCccccchHHHHHHHHHhcCCcEEEEEecCC
Q 009376 341 EFHAANMSGYD----VQ----LENLRVQPGEAVAVNFAFMLHHV---PDESVSTENYRDRLLMLVKRLSPKVVTLVEQES 409 (536)
Q Consensus 341 eF~~V~~~~~e----v~----~~~L~i~~gEaLaVN~~~~LH~l---~desv~~~n~rd~~L~~VksL~PkvvtlvEqEa 409 (536)
.=.. ...+ ++ +-.-..+| ++|+|.|-+=-|.- ..-.++. ..-..+.+.+++++.+++++.| .
T Consensus 244 ~~G~---~D~~Yl~~f~~ii~p~l~~F~P-dlIvvsaG~Da~~~DpLg~l~LT~-~g~~~~~~~l~~~~~plv~vle--G 316 (429)
T PTZ00346 244 WDGI---TDFYYLGLFEHALHSIVRRYSP-DAIVLQCGADSLAGDRLGLLNLSS-FGHGQCVQAVRDLGIPMLALGG--G 316 (429)
T ss_pred CCCc---CHHHHHHHHHHHHHHHHHhcCC-CEEEEECCccCCCCCCCCCceeCH-HHHHHHHHHHHhcCCCEEEEeC--C
Confidence 3110 0000 00 00001233 67888886665542 1112222 2234578889999988888876 3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHH
Q 009376 410 NTNTAAFYPRFLEALNYYTAMFE 432 (536)
Q Consensus 410 n~N~~~F~~RF~EaL~yYsAlFD 432 (536)
..| +....+++.|.++++-
T Consensus 317 GY~----~~~lar~w~~~t~~l~ 335 (429)
T PTZ00346 317 GYT----IRNVAKLWAYETSILT 335 (429)
T ss_pred cCC----ccHHHHHHHHHHHHHc
Confidence 333 2457788888888853
No 101
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=22.94 E-value=3.3e+02 Score=29.42 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=61.7
Q ss_pred hcHHHHHhcccCCeeE----EEecccCCccchHHHHHHHhcCC---CCCCeEEEEeecCCCCcc---cCC-ChHHHHHHH
Q 009376 260 ANGAIAEAMKDEDRVH----IIDFQIGQGSQWITLIQAFAARP---GGPPHIRITGIDDSISAY---ARG-GGLGIVGKR 328 (536)
Q Consensus 260 ANqAILEA~~ge~rVH----IIDf~I~~G~QWpsLiqaLA~R~---gGPP~LRITgI~~~~s~~---~~~-~~L~~tG~r 328 (536)
.-..|-|+.+.-.|+| -||+|=..-.||+-+++.|-.-- -+-|-++|-||+..-..+ .+. +.++..-+-
T Consensus 104 ~arqlse~A~~~Gk~h~VlLmVd~~DlreG~~~~~~~~l~~~V~eI~~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~ 183 (353)
T COG3457 104 TARQLSEAAVRMGKVHDVLLMVDYGDLREGQWGFLIEDLEETVEEIQQLKGIHLVGLGTNFPCFGDVLPTPENLESLLQG 183 (353)
T ss_pred HHHHHHHHHHHhCcceeEEEEEEcccccCcchhhHHHHHHHHHHHHhcCCCceEEeeecccccccCcCCCcccHHHHHHH
Confidence 3445556665544444 58888888899986666653211 133568999996543222 121 234444444
Q ss_pred HHHHHHhcCCcEEEEEeecCCc-c-c----cccCccccCCceEEEe
Q 009376 329 LSKLAEQFKVPFEFHAANMSGY-D-V----QLENLRVQPGEAVAVN 368 (536)
Q Consensus 329 L~~fA~s~gvpFeF~~V~~~~~-e-v----~~~~L~i~~gEaLaVN 368 (536)
-.+.+++.|++++--.-..... - + .+.-=.+++||||.--
T Consensus 184 ~~~lE~~~Gi~l~~vsagnats~~~L~~~~~~~inhlriG~al~~g 229 (353)
T COG3457 184 KKKLEASSGIQLKQVSAGNATSLTLLPMGSLPGINHLRIGEALTGG 229 (353)
T ss_pred HHHHHHhcCceeEEecCCCccchhhhhcccccccccccccceeecc
Confidence 4556777799988754432211 1 1 1122256789988654
No 102
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=22.10 E-value=8e+02 Score=27.02 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 264 IAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 264 ILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
+++.+.+.+.-.|+|+|.|.|. ++..||.+. |...++||+-..
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~----~ll~lA~~~---P~~~~iGIEI~~ 156 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGR----HLLYQAKNN---PNKLFIGIEIHT 156 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccH----HHHHHHHhC---CCCCEEEEECCH
Confidence 4455555556678999999983 455666664 567999999754
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=21.78 E-value=3.8e+02 Score=20.66 Aligned_cols=31 Identities=39% Similarity=0.637 Sum_probs=21.4
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSI 313 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~ 313 (536)
.|+|+|-+.|. +...++. .+..++++++.+.
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~ 31 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISP 31 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCH
Confidence 37899888874 4455544 2457999999764
No 104
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=21.47 E-value=1.6e+02 Score=29.75 Aligned_cols=83 Identities=25% Similarity=0.365 Sum_probs=40.5
Q ss_pred cCCcch---hhhhhhcHHHHHhcccC-CeeEEEecccCCccchHHHHHHHhcC--CCCCCeEEEEeecCCCCcccCCChH
Q 009376 249 VCPYFK---FGYMSANGAIAEAMKDE-DRVHIIDFQIGQGSQWITLIQAFAAR--PGGPPHIRITGIDDSISAYARGGGL 322 (536)
Q Consensus 249 ~~P~~k---Fa~~tANqAILEA~~ge-~rVHIIDf~I~~G~QWpsLiqaLA~R--~gGPP~LRITgI~~~~s~~~~~~~L 322 (536)
..|+.| ..|++|=..-.++++.. -.||.|.++=..+.| +|.++|+.- ..++-.|.++-.++
T Consensus 36 ~~~~HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~--s~~~~L~~~~~~~~~~~~~~~~P~d----------- 102 (224)
T PF04244_consen 36 YVPHHKQKLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQ--SFEDALARALKQHGIDRLHVMEPGD----------- 102 (224)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--S--SHHHHHHHHHHHH----EEEE--S------------
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccc--cHHHHHHHHHHHcCCCEEEEECCCC-----------
Confidence 345543 35677777888888754 589999999655443 444444221 12455677776554
Q ss_pred HHHHHHHHHHHHhcCCcEEEEE
Q 009376 323 GIVGKRLSKLAEQFKVPFEFHA 344 (536)
Q Consensus 323 ~~tG~rL~~fA~s~gvpFeF~~ 344 (536)
..+.++|.++++.+||+.++..
T Consensus 103 ~~l~~~l~~~~~~~~i~~~~~~ 124 (224)
T PF04244_consen 103 YRLEQRLESLAQQLGIPLEVLE 124 (224)
T ss_dssp HHHHHHHHH----SSS-EEEE-
T ss_pred HHHHHHHHhhhcccCCceEEeC
Confidence 3467899999999999988754
No 105
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=20.73 E-value=6.9e+02 Score=26.82 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=54.3
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCC-cEEEEEeecCCcccc
Q 009376 275 HIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKV-PFEFHAANMSGYDVQ 353 (536)
Q Consensus 275 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv-pFeF~~V~~~~~ev~ 353 (536)
.|+|++-|.|. +--+||.+ + -+++||+-+.. .++.+.+. |+..|+ ..+|.. .+..+..
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE~~~~------av~~a~~N----~~~~~~~~~~~~~--~d~~~~~ 294 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIEIESE------AIACAQQS----AQMLGLDNLSFAA--LDSAKFA 294 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEECCHH------HHHHHHHH----HHHcCCCcEEEEE--CCHHHHH
Confidence 68999988873 22344433 2 37999997643 24444433 344566 345533 2222211
Q ss_pred ccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 009376 354 LENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVE 406 (536)
Q Consensus 354 ~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~PkvvtlvE 406 (536)
.. + ...-++|++|=+.. .--..++..+..++|+-++.|+
T Consensus 295 ~~-~-~~~~D~vi~DPPr~------------G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 295 TA-Q-MSAPELVLVNPPRR------------GIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred Hh-c-CCCCCEEEECCCCC------------CCcHHHHHHHHhcCCCeEEEEE
Confidence 11 1 11236788884321 1124678888899999888886
No 106
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.05 E-value=7e+02 Score=23.03 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=8.7
Q ss_pred CeEEEEeecCCCC
Q 009376 302 PHIRITGIDDSIS 314 (536)
Q Consensus 302 P~LRITgI~~~~s 314 (536)
|.+||..+|++-.
T Consensus 1 ~~~~i~~~GDSit 13 (191)
T cd01836 1 PPLRLLVLGDSTA 13 (191)
T ss_pred CCeEEEEEecccc
Confidence 4567777777643
No 107
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=20.01 E-value=1e+03 Score=25.02 Aligned_cols=112 Identities=20% Similarity=0.165 Sum_probs=65.5
Q ss_pred cHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcE
Q 009376 261 NGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPF 340 (536)
Q Consensus 261 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 340 (536)
=..|++-+.=+.--||.|+| +.|-.|+.-.|.+-| +++|||+.+.+- +....+| ++..|++=
T Consensus 61 ~~~~~~kl~L~~G~~lLDiG----CGWG~l~~~aA~~y~----v~V~GvTlS~~Q------~~~~~~r----~~~~gl~~ 122 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIG----CGWGGLAIYAAEEYG----VTVVGVTLSEEQ------LAYAEKR----IAARGLED 122 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeC----CChhHHHHHHHHHcC----CEEEEeeCCHHH------HHHHHHH----HHHcCCCc
Confidence 33444545546677999986 458899999998863 799999987542 3333333 44567663
Q ss_pred EEEEeecCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHH-hcCCcEEEE
Q 009376 341 EFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVK-RLSPKVVTL 404 (536)
Q Consensus 341 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~Vk-sL~Pkvvtl 404 (536)
..+....+..++... + | .|-++=+++|+..+. -+.|++.++ -|+|.-..+
T Consensus 123 ~v~v~l~d~rd~~e~-f----D---rIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 123 NVEVRLQDYRDFEEP-F----D---RIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ccEEEeccccccccc-c----c---eeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEE
Confidence 333333333333222 1 2 223344677886532 357888885 467765543
Done!