BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009377
         (536 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|B Chain B, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|C Chain C, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|D Chain D, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|E Chain E, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|F Chain F, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|G Chain G, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|H Chain H, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|I Chain I, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
 pdb|2O1T|J Chain J, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
          Length = 450

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 271 ARLAACLGFGEKMEDII-AELVKSGKEIEAVYFASESGLTEKFPPVSLLKSHLRNSKKN 328
           A +A+  G+   ME I+ A+  ++GK+I   Y+AS+    E  P   L+K  LR  K++
Sbjct: 331 ALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKED 389


>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
 pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
 pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
 pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
          Length = 666

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 271 ARLAACLGFGEKMEDII-AELVKSGKEIEAVYFASESGLTEKFPPVSLLKSHLRNSKKN 328
           A +A+  G+   ME I+ A+  ++GK+I   Y+AS+    E  P   L+K  LR  K++
Sbjct: 558 ALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKED 616


>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
 pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
          Length = 421

 Score = 28.9 bits (63), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 236 AVMFLQMVFGFGLSSRFDQDFLRKLVMDY------ASRRDMARLAACLGFGEKMEDIIAE 289
           A++ L  V G  +SSR  QD   K  + Y      +S RD   L    G G    D + +
Sbjct: 253 ALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTG---HDQLDD 309

Query: 290 LVKSGKEIEAVYFASESGLTEK 311
           LV S +E  +    +E GLTEK
Sbjct: 310 LVYSIQETTSA--LAEKGLTEK 329


>pdb|4A17|T Chain T, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 5s Rrna, 5.8s
           Rrna And Proteins Of Molecule 2.
 pdb|4A1A|T Chain T, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 5s Rrna, 5.8s
           Rrna And Proteins Of Molecule 3.
 pdb|4A1C|T Chain T, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 5s Rrna, 5.8s
           Rrna And Proteins Of Molecule 4.
 pdb|4A1E|T Chain T, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 5s Rrna, 5.8s
           Rrna And Proteins Of Molecule 1
          Length = 158

 Score = 28.9 bits (63), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%)

Query: 129 FIISKRKESVSLRTEISRAIWEAVDPSRLVLDAVEEFLAQKREKVGVTDKRWACGLLVQA 188
           F ++K+ + +SLR   ++ I   +   RL        +AQK++K  VT  R   G+ ++ 
Sbjct: 32  FFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIAQKKKKRNVTVARAIVGISLEE 91

Query: 189 IFPEGSGNNGKKAAVGPVHARKVVERAAGVVERWKED 225
           I    + +   K A      R++ ++ A  +E+ + D
Sbjct: 92  INRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRAD 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,571,406
Number of Sequences: 62578
Number of extensions: 446812
Number of successful extensions: 1155
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 12
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)