BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009377
(536 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0DH90|FRIGI_ARATH Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1
Length = 609
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 135/339 (39%), Gaps = 37/339 (10%)
Query: 117 LCRRMDSSGLLKFIISKRKESVSLRTEISRAIWEAVDPSRLVLDAVEEFLAQKR----EK 172
+C M S GL K+I + + L EI A+ A +P++ VLD + +F Q R ++
Sbjct: 148 MCELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKE 207
Query: 173 VGVTDKRWACGLLVQAIFPEGSGNNGK---------KAAVGPVHARKVVERAAGVVERWK 223
++ R L++++ GK +A V RK + G+ K
Sbjct: 208 SPMSSARQVSLLILESFLLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAAEK 267
Query: 224 EDFRDSELGPAEAVMFLQMVFGFGLSSRFDQDFLRKLVMDYASRRDMARLAACLGFGEKM 283
D R L +V FG+ S F L L+ S L +
Sbjct: 268 MDARG----------LLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQFLVPMV 317
Query: 284 EDIIAELVKSGKEIEAVYFASESGLTEKFPPVSLLKSHLRNSKKNSTSILKNGNHSNSAT 343
I+ +K G IEA+ G+ +KF +L S L+ SK+ S K S A
Sbjct: 318 SGIVESSIKRGMHIEALEMVYTFGMEDKFSAALVLTSFLKMSKE-SFERAKRKAQSPLAF 376
Query: 344 EESNNLELNSIKAIIKCVEDHKLESA---------FSVDNLRKRATQLEKVKVERKKSSA 394
+E+ +L + ++++C+E HKL+ A + +L K QL+K E+ +S +
Sbjct: 377 KEAATKQLAVLSSVMQCMETHKLDPAKELPGWQIKEQIVSLEKDTLQLDKEMEEKARSLS 436
Query: 395 ATNSKPQNKRGHGASNSRGSGPPAFRPAKAAKFSNSSQS 433
KR + R P P + ++SS S
Sbjct: 437 LMEEAALAKRMYNQQIKR----PRLSPMEMPPVTSSSYS 471
>sp|Q3MBZ7|IF2_ANAVT Translation initiation factor IF-2 OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=infB PE=3 SV=1
Length = 1038
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 23 KTILSSCMQLFKSLTSHFTSLEDSLSQKFKSLDSKFLSLDSTSAQTLDSLSHRENSIP 80
K +L+ C QL ++ SH +++ +S ++ ++ K + + TS + L++ SH+ NS P
Sbjct: 20 KELLAICDQLNIAVKSHSSTISESEAESIRAAAEKLAATNGTSKKELNTTSHKPNSAP 77
>sp|Q8YQJ1|IF2_NOSS1 Translation initiation factor IF-2 OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=infB PE=3 SV=1
Length = 1039
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 23 KTILSSCMQLFKSLTSHFTSLEDSLSQKFKSLDSKFLSLDSTSAQTLDSLSHRENSIP 80
K +L+ C QL ++ SH +++ +S ++ ++ K + + TS + L++ SH+ NS P
Sbjct: 20 KELLAICDQLNIAVKSHSSTISESEAESIRAAAEKLAATNGTSKKELNATSHKPNSAP 77
>sp|Q67Z93|FRIG0_ARATH Inactive protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1
Length = 314
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 117 LCRRMDSSGLLKFIISKRKESVSLRTEISRAIWEAVDPSRLVLDAVEEFLAQKR 170
+C M S GL K+I + + L EI A+ A +P++ VLD + +F Q R
Sbjct: 148 ICELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGR 201
>sp|Q6PAW2|UBP16_XENLA Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus laevis GN=usp16
PE=2 SV=1
Length = 901
Score = 35.8 bits (81), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 234 AEAVMFLQMVFGFGLSSRFDQDFLRKLVMDYASRRDMARLAACLGFGEKMEDIIAE 289
E + + + L S D++ ++K+V DY RR + CL GE I+ E
Sbjct: 315 GEEIQRVTLAMSKSLQSTLDEEEIKKIVKDYEKRRTIPNFVDCLFGGELTSTIMCE 370
>sp|B2J955|IF2_NOSP7 Translation initiation factor IF-2 OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=infB PE=3 SV=1
Length = 1056
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%)
Query: 23 KTILSSCMQLFKSLTSHFTSLEDSLSQKFKSLDSKFLSLDSTSAQTLDSLSHRENSIPD 81
K +L+ C QL ++ SH +++ +S ++ ++ K + + ++ + L + SH+ NS P+
Sbjct: 20 KELLAICDQLSIAVKSHSSTISESEAENIRTAAEKLAATNVSAKKELGTTSHKPNSPPN 78
>sp|Q5SWY7|FA83G_MOUSE Protein FAM83G OS=Mus musculus GN=Fam83g PE=1 SV=1
Length = 812
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 27/93 (29%)
Query: 406 HGASNSRGSGPPAFRPAKAAKFSNSSQSFSRR-NPAPKAQHSPAARYSGPYGYPSQSVYE 464
HG++ SR GPP FRPA ++ +QS S++ +PA H + P G P+ +
Sbjct: 699 HGSTTSRTPGPPRFRPA-----ADGTQSSSKKASPAAAGPH-----HWQPKGSPTPRMLP 748
Query: 465 GP----------------STAHYASTYGVPHTQ 481
P +T +AS +G+P+++
Sbjct: 749 DPGSPRPTRNTRLRAELRATEEHASPFGIPYSK 781
>sp|Q1RIX7|GRPE_RICBR Protein GrpE OS=Rickettsia bellii (strain RML369-C) GN=grpE PE=3
SV=1
Length = 176
Score = 33.1 bits (74), Expect = 6.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 340 NSATEESNNLELNSIKAIIKCVEDHKLESAFSVDNLRKRATQLEKVKVERKKSSAATNSK 399
N EE N E+ +KA I+ ++D + ++ +DN RKR LEK + E + + T +K
Sbjct: 15 NDIAEEVENTEIADLKAQIEELKDKLIRASAEIDNTRKR---LEKARDEARDYAITTFAK 71
>sp|A8GW24|GRPE_RICB8 Protein GrpE OS=Rickettsia bellii (strain OSU 85-389) GN=grpE PE=3
SV=1
Length = 176
Score = 33.1 bits (74), Expect = 6.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 340 NSATEESNNLELNSIKAIIKCVEDHKLESAFSVDNLRKRATQLEKVKVERKKSSAATNSK 399
N EE N E+ +KA I+ ++D + ++ +DN RKR LEK + E + + T +K
Sbjct: 15 NDIAEEVENTEIADLKAQIEELKDKLIRASAEIDNTRKR---LEKARDEARDYAITTFAK 71
>sp|C4K2U3|GRPE_RICPU Protein GrpE OS=Rickettsia peacockii (strain Rustic) GN=grpE PE=3
SV=1
Length = 178
Score = 32.3 bits (72), Expect = 8.8, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 345 ESNNLELNSIKAIIKCVEDHKLESAFSVDNLRKRATQLEKVKVERKKSSAATNSK 399
E+ N E+ ++KA I+ ++D + + +DN RKR LEK + E K + AT +K
Sbjct: 22 ETANPEVTALKAEIEELKDKLIRTTAEIDNTRKR---LEKARDEAKDYAIATFAK 73
>sp|Q92GZ5|GRPE_RICCN Protein GrpE OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=grpE PE=3 SV=1
Length = 178
Score = 32.3 bits (72), Expect = 8.8, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 345 ESNNLELNSIKAIIKCVEDHKLESAFSVDNLRKRATQLEKVKVERKKSSAATNSK 399
E+ N E+ ++KA I+ ++D + + +DN RKR LEK + E K + AT +K
Sbjct: 22 ETANPEVTALKAEIEELKDKLIRTTAEIDNTRKR---LEKARDEAKDYAIATFAK 73
>sp|C3PP76|GRPE_RICAE Protein GrpE OS=Rickettsia africae (strain ESF-5) GN=grpE PE=3 SV=1
Length = 178
Score = 32.3 bits (72), Expect = 8.8, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 345 ESNNLELNSIKAIIKCVEDHKLESAFSVDNLRKRATQLEKVKVERKKSSAATNSK 399
E+ N E+ ++KA I+ ++D + + +DN RKR LEK + E K + AT +K
Sbjct: 22 ETANPEVTALKAEIEELKDKLIRTTAEIDNTRKR---LEKARDEAKDYAIATFAK 73
>sp|Q9JIL9|NBN_RAT Nibrin OS=Rattus norvegicus GN=Nbn PE=1 SV=2
Length = 750
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 281 EKMEDIIAELVKSGKEIEAVYFASESGLTEKFPPVSLLKSHLRNSKK---NSTSILKNGN 337
EKM++ ++ +K+G + F ES ++ P+ + S L S K N + G
Sbjct: 81 EKMQNGLSSTLKTGDRVTFGVF--ESKFRVEYEPLVVCSSCLDVSGKTVLNQAILQLGGL 138
Query: 338 HSNSATEESNNLELNSIKAIIKCV 361
+NS TEE +L ++S+K IK +
Sbjct: 139 TANSWTEECTHLAMSSVKVTIKTI 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,063,980
Number of Sequences: 539616
Number of extensions: 7554143
Number of successful extensions: 32305
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 192
Number of HSP's that attempted gapping in prelim test: 31456
Number of HSP's gapped (non-prelim): 801
length of query: 536
length of database: 191,569,459
effective HSP length: 122
effective length of query: 414
effective length of database: 125,736,307
effective search space: 52054831098
effective search space used: 52054831098
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)