Query 009377
Match_columns 536
No_of_seqs 138 out of 165
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swf_A CGMP-gated cation chann 42.1 61 0.0021 26.5 6.2 48 3-60 3-50 (74)
2 3mkq_B Coatomer subunit alpha; 40.6 94 0.0032 29.0 8.3 71 232-309 61-131 (177)
3 3ci9_A Heat shock factor-bindi 37.4 56 0.0019 24.6 4.9 32 32-63 14-45 (48)
4 3swy_A Cyclic nucleotide-gated 36.3 1E+02 0.0035 22.9 6.2 43 5-57 3-45 (46)
5 2xus_A Breast cancer metastasi 35.6 53 0.0018 24.8 4.6 35 28-62 10-45 (49)
6 3fx7_A Putative uncharacterize 32.9 65 0.0022 27.4 5.2 57 9-68 8-71 (94)
7 2rlw_A PLNF; toxin; NMR {Lacto 28.3 25 0.00084 24.0 1.5 24 144-167 10-33 (34)
8 3ghg_A Fibrinogen alpha chain; 26.6 60 0.0021 35.4 4.9 31 124-154 134-164 (562)
9 1xgw_A Epsin 4; ENTH, enthopro 23.3 84 0.0029 29.4 4.7 74 126-228 96-172 (176)
10 3k1h_A HP1076, putative unchar 21.1 36 0.0012 31.5 1.6 46 117-167 104-153 (158)
11 3onk_A Epsin-3, ENT3; helix, p 20.8 1E+02 0.0036 28.0 4.7 75 126-227 73-148 (150)
12 3gwk_C SAG1039, putative uncha 20.3 2.3E+02 0.0078 22.5 6.3 57 3-59 18-83 (98)
No 1
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.13 E-value=61 Score=26.48 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=36.1
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHhhhhhh
Q 009377 3 TEVSIKTDRVEKFFEDLKAQKTILSSCMQLFKSLTSHFTSLEDSLSQKFKSLDSKFLS 60 (536)
Q Consensus 3 t~~~~~~e~l~kaF~eLqs~~s~l~s~t~~W~eL~~HF~sLe~sL~~r~e~L~~k~~~ 60 (536)
-.|+-|.++|.-.++-||. .+..|-.-|++-|+-|++|...|+.+.+.
T Consensus 3 ~dlEEKv~~LE~sld~LQT----------rfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQT----------RFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666665 35667788999999999999999988875
No 2
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=40.63 E-value=94 Score=29.02 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHhCCCCCCChHHHHHHHHhhhchhhHHHHHHHcCCCcchHHHHHHHHhcCcchHHHHHHHHhcCC
Q 009377 232 GPAEAVMFLQMVFGFGLSSRFDQDFLRKLVMDYASRRDMARLAACLGFGEKMEDIIAELVKSGKEIEAVYFASESGLT 309 (536)
Q Consensus 232 ~~leA~gFLqlLa~FGI~seFd~dEL~~Lv~~va~rrqa~eL~~sLGL~~KmpdiI~~LI~kGk~IeAV~fi~aF~L~ 309 (536)
+.++-+-||..+ .| |.+.|.++....-.+.+.---+...=+..++.+-|+-|++.|+.-+|+-|+.++|+.
T Consensus 61 ~D~~~L~~Ly~~--tg-----~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~ 131 (177)
T 3mkq_B 61 HSFDKLSFLYLV--TG-----DVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE 131 (177)
T ss_dssp TCHHHHHHHHHH--HT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHH--hC-----CHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcH
Confidence 344444555544 33 335555544333333333333333334567888999999999999999999998884
No 3
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=37.45 E-value=56 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.472 Sum_probs=28.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHhhhhhhccc
Q 009377 32 LFKSLTSHFTSLEDSLSQKFKSLDSKFLSLDS 63 (536)
Q Consensus 32 ~W~eL~~HF~sLe~sL~~r~e~L~~k~~~~e~ 63 (536)
...++++||..+-..|-.|.++...+.-++|.
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 57899999999999999999999888887775
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=36.34 E-value=1e+02 Score=22.91 Aligned_cols=43 Identities=16% Similarity=0.384 Sum_probs=30.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 009377 5 VSIKTDRVEKFFEDLKAQKTILSSCMQLFKSLTSHFTSLEDSLSQKFKSLDSK 57 (536)
Q Consensus 5 ~~~~~e~l~kaF~eLqs~~s~l~s~t~~W~eL~~HF~sLe~sL~~r~e~L~~k 57 (536)
++-|.++|.-.++-||. .+..|-.-|++-|+-|++|...|+.+
T Consensus 3 lEekv~~Le~~ld~LqT----------r~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQT----------RFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555554 45667788999999999999988764
No 5
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=35.63 E-value=53 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.427 Sum_probs=27.9
Q ss_pred HHHhhHHHHHHhHHHH-HHHHHHHHHHHhhhhhhcc
Q 009377 28 SCMQLFKSLTSHFTSL-EDSLSQKFKSLDSKFLSLD 62 (536)
Q Consensus 28 s~t~~W~eL~~HF~sL-e~sL~~r~e~L~~k~~~~e 62 (536)
.|...|..|+..|+.| |+-.+.|...|+.++.++.
T Consensus 10 e~ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 10 ECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777899999999888 6777888888888877643
No 6
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=32.85 E-value=65 Score=27.44 Aligned_cols=57 Identities=32% Similarity=0.539 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHhhHHHHHHhHHHHH-------HHHHHHHHHHhhhhhhcccchhhh
Q 009377 9 TDRVEKFFEDLKAQKTILSSCMQLFKSLTSHFTSLE-------DSLSQKFKSLDSKFLSLDSTSAQT 68 (536)
Q Consensus 9 ~e~l~kaF~eLqs~~s~l~s~t~~W~eL~~HF~sLe-------~sL~~r~e~L~~k~~~~e~~~~~t 68 (536)
.+.++++-.+|+.....|. ..|..|..||.+|. .....-|++|.+.++.+...+.+-
T Consensus 8 peElr~Fa~~L~~F~d~Lq---~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~ 71 (94)
T 3fx7_A 8 TEEVREFVGHLERFKELLR---EEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQ 71 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3667777777877655543 47999999999996 233344555566666555544433
No 7
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=28.32 E-value=25 Score=24.03 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.8
Q ss_pred HHHHHHhCCCchHHHHHHHhhhhh
Q 009377 144 ISRAIWEAVDPSRLVLDAVEEFLA 167 (536)
Q Consensus 144 vp~ALr~ApDPAkLVLdai~~F~~ 167 (536)
+-...+.|+-||..|+.++.||..
T Consensus 10 vrnnyksavgpadwvisavrgfih 33 (34)
T 2rlw_A 10 VRNNYKSAVGPADWVISAVRGFIH 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccccccChHHHHHHHHHhhcc
Confidence 445567788999999999999964
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.64 E-value=60 Score=35.43 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=21.6
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHhCCCc
Q 009377 124 SGLLKFIISKRKESVSLRTEISRAIWEAVDP 154 (536)
Q Consensus 124 ~GL~kfv~~~~ke~~~lr~Evp~ALr~ApDP 154 (536)
+-|+.-|.+.+.+...|.-.|...|+.|--|
T Consensus 134 rvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4566667777777777777777777776554
No 9
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=23.29 E-value=84 Score=29.40 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=37.7
Q ss_pred HHHHHHhhccch--hhHHHHHHHHHHhCCCchHHHHHHHhhh-hhhccccccccchhhHhHHHHHHhcccCCCCCCCccc
Q 009377 126 LLKFIISKRKES--VSLRTEISRAIWEAVDPSRLVLDAVEEF-LAQKREKVGVTDKRWACGLLVQAIFPEGSGNNGKKAA 202 (536)
Q Consensus 126 L~kfv~~~~ke~--~~lr~Evp~ALr~ApDPAkLVLdai~~F-~~~~~~k~~l~d~r~aCvlLLE~L~~~~~~~~~~~~~ 202 (536)
|..|++.|..|. ..+|+. ..++..+..| |.+..|+.--..+|.-+--|++.|.
T Consensus 96 LLeYLl~nGse~vv~~~r~~------------i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~------------ 151 (176)
T 1xgw_A 96 LLAYLIRNGSERVVTSAREH------------IYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQ------------ 151 (176)
T ss_dssp HHHHHHHHSCHHHHHHHHHT------------HHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHhCCHHHHHHHHHh------------HHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHC------------
Confidence 778888887752 222222 2566778888 5554443211235655666676653
Q ss_pred CCCCCCHhHHHHHHHHHHHHHHhccC
Q 009377 203 VGPVHARKVVERAAGVVERWKEDFRD 228 (536)
Q Consensus 203 ~~P~is~~vkeeAk~lA~~WK~ki~~ 228 (536)
+++..++.++-|..+|.++.|
T Consensus 152 -----D~e~Lr~eR~ka~k~r~k~~G 172 (176)
T 1xgw_A 152 -----DDDRLREERKKAKKNKDKYVG 172 (176)
T ss_dssp -----CHHHHHHHHHHC---------
T ss_pred -----CHHHHHHHHHHHHHHHhhccC
Confidence 345566777778888888743
No 10
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=21.10 E-value=36 Score=31.53 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=27.2
Q ss_pred HhhcCChHHHHHHHHhhccchhhHHHHHHHHHH----hCCCchHHHHHHHhhhhh
Q 009377 117 LCRRMDSSGLLKFIISKRKESVSLRTEISRAIW----EAVDPSRLVLDAVEEFLA 167 (536)
Q Consensus 117 LCe~MDs~GL~kfv~~~~ke~~~lr~Evp~ALr----~ApDPAkLVLdai~~F~~ 167 (536)
+|++|| ||..||.+++.|....-.+|..|+- ..|.+.. +++.+|..
T Consensus 104 ll~~~~--~l~aYie~K~~EIk~~Ls~iS~ai~~~~~~tPs~s~---~~~~~f~~ 153 (158)
T 3k1h_A 104 LLENVG--EFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSN---QSLKDLLS 153 (158)
T ss_dssp GGGSHH--HHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred Hhhccc--HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcch---hhHHHhhH
Confidence 457777 9999999999998888889999887 3566655 66666644
No 11
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=20.82 E-value=1e+02 Score=27.96 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=41.1
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHhCCCchHHHHHHHhhh-hhhccccccccchhhHhHHHHHHhcccCCCCCCCcccCC
Q 009377 126 LLKFIISKRKESVSLRTEISRAIWEAVDPSRLVLDAVEEF-LAQKREKVGVTDKRWACGLLVQAIFPEGSGNNGKKAAVG 204 (536)
Q Consensus 126 L~kfv~~~~ke~~~lr~Evp~ALr~ApDPAkLVLdai~~F-~~~~~~k~~l~d~r~aCvlLLE~L~~~~~~~~~~~~~~~ 204 (536)
|..|++.|..+. +-.-++. ...++..+..| |.+..|+.-...+|.-|--|++.|.
T Consensus 73 lLeyLl~nGse~------vv~~~r~----~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~-------------- 128 (150)
T 3onk_A 73 LLDYLIKHGSER------FIDDTRN----SINLIRILETFHYIDSQGRDQGINVRTRVKALIELLS-------------- 128 (150)
T ss_dssp HHHHHHHHSCHH------HHHHHHT----THHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHhCCHH------HHHHHHH----HHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHc--------------
Confidence 788999888763 1111222 23567778888 5554444211245555666666653
Q ss_pred CCCCHhHHHHHHHHHHHHHHhcc
Q 009377 205 PVHARKVVERAAGVVERWKEDFR 227 (536)
Q Consensus 205 P~is~~vkeeAk~lA~~WK~ki~ 227 (536)
+++..++.++-|..+|.+..
T Consensus 129 ---D~e~L~~eR~ka~~~~~k~~ 148 (150)
T 3onk_A 129 ---DDNKIRAERKKARETAKKYK 148 (150)
T ss_dssp ---CHHHHHHHHHHHHHC-----
T ss_pred ---CHHHHHHHHHHHHHHHHhhc
Confidence 34556677777878887764
No 12
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.32 E-value=2.3e+02 Score=22.50 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=31.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhH---------HHHhhHHHHHHhHHHHHHHHHHHHHHHhhhhh
Q 009377 3 TEVSIKTDRVEKFFEDLKAQKTILS---------SCMQLFKSLTSHFTSLEDSLSQKFKSLDSKFL 59 (536)
Q Consensus 3 t~~~~~~e~l~kaF~eLqs~~s~l~---------s~t~~W~eL~~HF~sLe~sL~~r~e~L~~k~~ 59 (536)
..+....+.|+.-+..|+.+-..|. .|...|.++..-|..+.+.|..-.+.|+.--.
T Consensus 18 ~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~ 83 (98)
T 3gwk_C 18 QKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVAD 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666544442 34455666666666666666655555544443
Done!