BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009378
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 177/266 (66%), Gaps = 8/266 (3%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+NL ++GHVD GKSTL G LL+ LG I +K++ + E++AK +GK SF +AW LD+ EE
Sbjct: 9 HMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEE 68
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
RERGIT+ + F++K Y ++D+PGH+DFV NMI+GA+Q+DAAILV+ A G FE G
Sbjct: 69 RERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAG 128
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA--VQYSKDRFDSIKVQLGTFLRSCGFKD 443
M+T +G TREH L R+ G++Q+IVAVNKMDA V Y + R++ + L F++ G++
Sbjct: 129 MST-EGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQV 187
Query: 444 ASLTWIPLSALENQNLVT-APDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502
+ +IP+SA + NL+ +P+ + WY GP L++A+D L+PP + KPL +P+ +V
Sbjct: 188 DKIPFIPVSAWKGDNLIERSPN----MPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNV 243
Query: 503 LKSQHGQVSACGKLEAGALRSGLKVC 528
G++E G LR G KV
Sbjct: 244 YSIPGAGTVPVGRVETGVLRVGDKVV 269
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 238 bits (606), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 177/266 (66%), Gaps = 8/266 (3%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+NL ++GHVD GKSTL G LL+ LG I +K++ + E++AK +GK SF +AW LD+ EE
Sbjct: 6 HMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEE 65
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
RERGIT+ + F++K Y ++D+PGH+DFV NMI+GA+Q+DAAILV+ A G FE G
Sbjct: 66 RERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAG 125
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA--VQYSKDRFDSIKVQLGTFLRSCGFKD 443
M+T +G TREH L R+ G++Q+IVAVNKMDA V Y + R++ + L F++ G++
Sbjct: 126 MST-EGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQV 184
Query: 444 ASLTWIPLSALENQNLVT-APDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502
+ +IP+SA + NL+ +P+ + WY GP L++A+D L+PP + KPL +P+ +V
Sbjct: 185 DKIPFIPVSAWKGDNLIERSPN----MPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNV 240
Query: 503 LKSQHGQVSACGKLEAGALRSGLKVC 528
G++E G LR G KV
Sbjct: 241 YSIPGAGTVPVGRVETGVLRVGDKVV 266
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 169/257 (65%), Gaps = 4/257 (1%)
Query: 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
++L + GHVDSGKST+ GR++F LG I + M K EA GKGSF+YAW LD + EER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGM 386
RG+TM VA F+S + D+PGH+DF+ MI+GA+ +D A+LV+D+S +FE G
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGF 297
Query: 387 NTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL-RSCGFKDAS 445
G TREHA L+R+ G+ +++V+VNK+D + +S+DRF IK + FL + GFK ++
Sbjct: 298 -LENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSN 356
Query: 446 LTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKS 505
+ ++P+SA+ NL+ D L WYKGP LL A+D L PP + + KPL + I DV +S
Sbjct: 357 VHFVPISAISGTNLIQK-DSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRS 415
Query: 506 QHGQVSACGKLEAGALR 522
V+ G++EAG ++
Sbjct: 416 PRS-VTVTGRVEAGNVQ 431
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/279 (41%), Positives = 170/279 (60%), Gaps = 16/279 (5%)
Query: 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALD 320
G + +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA GKGSF YAW LD
Sbjct: 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLD 61
Query: 321 ESAEERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
+ ERERGIT+ +A+ F++ Y V V+D+PGH+DF+ NMI+G +Q+D AIL+I VG
Sbjct: 62 KLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121
Query: 381 SFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG 440
FE G+ + G TREHA L + GV QLIVAVNKMD+V++ + RF I + F++ G
Sbjct: 122 EFEAGI-SKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG 180
Query: 441 FKDASLTWIPLSALENQNLVTAPDDGRLLSWY------------KGPCLLDAIDSLRPPP 488
+ ++ ++P+S N++ A + WY KG LL+AID++ P
Sbjct: 181 YNPKTVPFVPISGWNGDNMIEATTNA---PWYKGWEKETKAGVVKGKTLLEAIDAIEQPS 237
Query: 489 REFSKPLLMPICDVLKSQHGQVSACGKLEAGALRSGLKV 527
R KPL +P+ DV K G++E G ++ G+ V
Sbjct: 238 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVV 276
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 163/265 (61%), Gaps = 6/265 (2%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
LNL ++GHVD GKSTL GRLL G I +K + + E+ AK GK S +A+ LD EE
Sbjct: 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE 65
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
RERG+T+ + F++K Y ++D+PGH+DFV NMI+GA+Q+DAAILV+ A G +E G
Sbjct: 66 RERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG 125
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YSKDRFDSIKVQLGTFLRSCGFKD 443
M + +G TREH L ++ G+DQLIVAVNKMD + Y + R+ I Q+ F+RS GF
Sbjct: 126 M-SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNT 184
Query: 444 ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVL 503
+ ++P+ A N+ ++ + WY GP L + +D L PP+ KPL +PI DV
Sbjct: 185 NKVRFVPVVAPSGDNITHKSEN---MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVY 241
Query: 504 KSQHGQVSACGKLEAGALRSGLKVC 528
G++E+G L+ G K+
Sbjct: 242 SISGVGTVPVGRVESGVLKVGDKIV 266
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 174/279 (62%), Gaps = 10/279 (3%)
Query: 248 QYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKL 307
Q + ++ +L D G +N+ +GHVD+GKSTL G +LFL G + ++ M K E+EAK
Sbjct: 27 QNEVDQELLKDMYGKE--HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKE 84
Query: 308 QGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQ 367
GK S+ +WALD ++EERE+G T+ V AYF++++ +LD+PGHK +V NMI+GA+Q
Sbjct: 85 AGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQ 144
Query: 368 SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQYSKDRF 425
+D +LVI A G FE G G TREHA L R+ G++ L+V +NKMD +VQ+S++R+
Sbjct: 145 ADIGVLVISARRGEFEAGFERG-GQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY 203
Query: 426 DSIKVQLGTFLRS-CGFKDAS-LTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS 483
+L FLR G+ + + ++P+SA QN V D + WY+GP LL+ +DS
Sbjct: 204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQN-VKDRVDSSVCPWYQGPSLLEYLDS 262
Query: 484 LRPPPREFSKPLLMPICDVLKSQHGQVSACGKLEAGALR 522
+ R+ + P +MPI K + GK+EAG+++
Sbjct: 263 MTHLERKVNAPFIMPIASKYKDLGTILE--GKIEAGSIK 299
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 162/273 (59%), Gaps = 16/273 (5%)
Query: 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESA 323
+ L+ ++GHVD+GKSTL GRLL+ L + Q Q+ K ++E++ GK SF +AW +D++
Sbjct: 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTN 224
Query: 324 EERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFE 383
EERERG+T+++ ++F + + ++D+PGH+DFVPN I G +Q+D AIL +D S +FE
Sbjct: 225 EERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 284
Query: 384 VGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443
G + G T+EH L S G+ LI+A+NKMD V +S+ RF+ IK +L +L GF +
Sbjct: 285 SGFDL-DGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFE 343
Query: 444 ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSK---------P 494
++ W+P+S + + + WY GP L+ +L + SK P
Sbjct: 344 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLM---STLENAAFKISKENEGINKDDP 400
Query: 495 LLMPICDVL---KSQHGQVSACGKLEAGALRSG 524
L + +++ K+ + GKLE+G+++ G
Sbjct: 401 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPG 433
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 163/273 (59%), Gaps = 16/273 (5%)
Query: 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESA 323
+ L+ ++GHVD+GKSTL GRLL+ L + Q Q+ K ++E++ GK SF +AW +D++
Sbjct: 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTN 90
Query: 324 EERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFE 383
EERERG+T+++ ++F + + ++D+PGH+DFVPN I G +Q+D AIL +D S +FE
Sbjct: 91 EERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 150
Query: 384 VGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443
G + G T+EH L S G+ LI+A+NKMD V +S+ RF+ IK +L +L GF +
Sbjct: 151 SGFDL-DGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFE 209
Query: 444 ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSK---------P 494
++ W+P+S + + + WY GP L+ +++ + SK P
Sbjct: 210 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLEN---AAFKISKENEGINKDDP 266
Query: 495 LLMPICDVL---KSQHGQVSACGKLEAGALRSG 524
L + +++ K+ + GKLE+G+++ G
Sbjct: 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPG 299
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/262 (40%), Positives = 158/262 (60%), Gaps = 9/262 (3%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD+GKST+ G++++L G + ++ + KYE+EAK + + ++ +WALD + EE
Sbjct: 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEE 76
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R++G T+ V AYF+++ H +LD+PGHK FVPNMI GA+Q+D A+LVI A G FE G
Sbjct: 77 RDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETG 136
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQYSKDRFDSIKVQLGTFLRSCGFK- 442
G TREHA L ++ GV LIV +NKMD V +S +R++ K +L FL+ GF
Sbjct: 137 FEKG-GQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNP 195
Query: 443 DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502
+ ++P S L NL D WY G + +D+L R P+ +PI D
Sbjct: 196 KKDIHFMPCSGLTGANLKEQSD---FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDK 252
Query: 503 LKSQHGQVSACGKLEAGALRSG 524
K G V GKLE+G++ G
Sbjct: 253 YKDM-GTV-VLGKLESGSIFKG 272
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 159/273 (58%), Gaps = 16/273 (5%)
Query: 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESA 323
+ L+ ++GHVD+GKSTL GRLL+ L + Q Q+ K ++E++ GK SF +AW D++
Sbjct: 31 LPHLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTN 90
Query: 324 EERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFE 383
EERERG+T+++ ++F + + ++D+PGH+DFVPN I G +Q+D AIL +D S +FE
Sbjct: 91 EERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFE 150
Query: 384 VGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443
G + G T+EH L S G+ LI+A NK D V +S+ RF+ IK +L +L GF +
Sbjct: 151 SGFDL-DGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYLVDIGFFE 209
Query: 444 ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSK---------P 494
++ W+P+S + + + WY GP L +++ + SK P
Sbjct: 210 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLEN---AAFKISKENEGINKDDP 266
Query: 495 LLMPICDVL---KSQHGQVSACGKLEAGALRSG 524
L + +++ K+ + GKLE+G+++ G
Sbjct: 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPG 299
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 130/270 (48%), Gaps = 37/270 (13%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L + KYE+ +D + EE
Sbjct: 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE---------------IDNAPEE 47
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A + + H D PGH D+V NMI+G D ILV+ A+ G
Sbjct: 48 RARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-- 105
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV+ ++V VNK DAVQ S + + +++++ L G+K
Sbjct: 106 ------QTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVELEIRELLTEFGYKGEE 158
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
I L ALE ++ P+ G L S K LLDA+D+ P P R+ KP L+P+
Sbjct: 159 TPIIVGSALCALEQRD----PELG-LKSVQK---LLDAVDTYIPVPTRDLEKPFLLPVES 210
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKVCNFL 531
V G LE G L+ G + C FL
Sbjct: 211 VYSIPGRGTVVTGTLERGILKKGDE-CEFL 239
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 129/270 (47%), Gaps = 37/270 (13%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L + KYE+ +D + EE
Sbjct: 14 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE---------------IDNAPEE 58
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A + + H D PGH D+V N I+G D ILV+ A+ G
Sbjct: 59 RARGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXP-- 116
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV+ ++V VNK DAVQ S + + +++++ L G+K
Sbjct: 117 ------QTREHLLLARQIGVEHVVVYVNKADAVQDS-EXVELVELEIRELLTEFGYKGEE 169
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
I L ALE ++ P+ G L S K LLDA+D+ P P R+ KP L+P+
Sbjct: 170 TPIIVGSALCALEQRD----PELG-LKSVQK---LLDAVDTYIPVPTRDLEKPFLLPVES 221
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKVCNFL 531
V G LE G L+ G + C FL
Sbjct: 222 VYSIPGRGTVVTGTLERGILKKGDE-CEFL 250
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 123/269 (45%), Gaps = 13/269 (4%)
Query: 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGS--FAYAWAL 319
+R L G+VD GKSTL GRLL I + + +++K G A +
Sbjct: 20 ERKEXLRFLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLV 79
Query: 320 DESAEERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV 379
D ERE+GIT+ VA YF + ++ D+PGH+ + N +GA+ D AI+++DA
Sbjct: 80 DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARY 139
Query: 380 GSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSC 439
G + TR H+ + G+ ++VA+NK D + + F+SIK F
Sbjct: 140 G--------VQTQTRRHSYIASLLGIKHIVVAINKXDLNGFDERVFESIKADYLKFAEGI 191
Query: 440 GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499
FK + ++P SAL+ N+V + WY G L + ++++ L P+
Sbjct: 192 AFKPTTXAFVPXSALKGDNVVNKSERS---PWYAGQSLXEILETVEIASDRNYTDLRFPV 248
Query: 500 CDVLKSQHGQVSACGKLEAGALRSGLKVC 528
V + G L +G + G ++
Sbjct: 249 QYVNRPNLNFRGFAGTLASGIVHKGDEIV 277
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L F+ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTFV------TAAENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L F+ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTFVTA------AENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYV------AAAENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYV------AAAENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVTA------AENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYV------AAAENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYV------AAAENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVTA------AENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ E K G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYV------AAAENPNVEVKDYGD--------IDKAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 115 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 168 VPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 228 VFTITGRGTVATGRIERGKVKVGDEV 253
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ E K G +D++ EE
Sbjct: 12 HVNVGTIGHVDHGKTTLTAALTYV------AAAENPNVEVKDYGD--------IDKAPEE 57
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D PGH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 58 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 115
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V + D +++++ L F
Sbjct: 116 ------QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDE 168
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP-REFSKPLLMPICD 501
+ I L ALE + G K LLDAID P P R+ KP LMP+ D
Sbjct: 169 VPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 228
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V A G++E G ++ G +V
Sbjct: 229 VFTITGRGTVATGRIERGKVKVGDEV 254
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 33/266 (12%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ L ++ + +++ G +D++ EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAA--------AENRNVEVKDYGD------IDKAREE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
R RGIT+ A +++ H +D GH D++ NMI+GA Q D AILV+ A+ G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMR-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV ++V +NK+D V ++ D +++++ L F+
Sbjct: 115 ------QTREHILLARQVGVRYIVVFMNKVDMVD-DRELLDLVEMEVRDLLNQYEFRGDE 167
Query: 446 LTWI---PLSALE--NQNLVTAPDDGRLLSWY-KGPCLLDAIDS-LRPPPREFSKPLLMP 498
+ I L ALE ++N T + W K LLDAID +R R+ K LM
Sbjct: 168 VRVIRGSALLALEEMHKNRKTKRGEN---EWVDKIWELLDAIDEYIRTRVRDVDKRFLMR 224
Query: 499 ICDVLKSQHGQVSACGKLEAGALRSG 524
+ DV A G++E G ++ G
Sbjct: 225 VEDVFTITGRGTVATGRIERGKVKVG 250
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 38/266 (14%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G + A+ +D + EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFDQ-IDNAPEE 55
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
+ RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 56 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 113
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 114 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 166
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 167 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 216
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 217 VFSISGRGTVVTGRVERGIIKVGEEV 242
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 38/266 (14%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G + A+ +D + EE
Sbjct: 12 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFDQ-IDNAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
+ RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 57 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 115 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 168 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 217
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 218 VFSISGRGTVVTGRVERGIIKVGEEV 243
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 38/266 (14%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G + A+ +D + EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFDQ-IDNAPEE 55
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
+ RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 56 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 113
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 114 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 166
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 167 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 216
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 217 VFSISGRGTVVTGRVERGIIKVGEEV 242
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 38/266 (14%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G + A+ +D + EE
Sbjct: 296 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFD-QIDNAPEE 340
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
+ RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 341 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 398
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 399 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 451
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 452 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 501
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 502 VFSISGRGTVVTGRVERGIIKVGEEV 527
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 38/266 (14%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G + A+ +D + EE
Sbjct: 296 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFDQ-IDNAPEE 340
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
+ RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 341 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 398
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 399 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 451
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 452 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 501
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 502 VFSISGRGTVVTGRVERGIIKVGEEV 527
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 38/266 (14%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G + A+ +D + EE
Sbjct: 11 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFDQ-IDNAPEE 55
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
+ RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 56 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 113
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 114 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 166
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 167 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 216
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 217 VFSISGRGTVVTGRVERGIIKVGEEV 242
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 38/266 (14%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G + A+ +D + EE
Sbjct: 3 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFDQ-IDNAPEE 47
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
+ RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 48 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 105
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 106 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 158
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 159 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 208
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 209 VFSISGRGTVVTGRVERGIIKVGEEV 234
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 38/266 (14%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G + A+ +D + EE
Sbjct: 12 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFDQ-IDNAPEE 56
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
+ RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 57 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 114
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 115 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 167
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 168 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 217
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 218 VFSISGRGTVVTGRVERGIIKVGEEV 243
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 116/266 (43%), Gaps = 52/266 (19%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
+N+ +GHVD GK+TL+ + +L AK G +
Sbjct: 11 HVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAA------------- 43
Query: 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVG 385
RGIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 44 --RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 99
Query: 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 100 ------QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDD 152
Query: 446 LTWI---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICD 501
+ L ALE A + ++L L +DS P P R KP L+PI D
Sbjct: 153 TPIVRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIED 202
Query: 502 VLKSQHGQVSACGKLEAGALRSGLKV 527
V G++E G ++ G +V
Sbjct: 203 VFSISGRGTVVTGRVERGIIKVGEEV 228
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388
GIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMP----- 55
Query: 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTW 448
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 56 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 111
Query: 449 I---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICDVLK 504
+ L ALE A + ++L L +DS P P R KP L+PI DV
Sbjct: 112 VRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIEDVFS 161
Query: 505 SQHGQVSACGKLEAGALRSGLKV 527
G++E G ++ G +V
Sbjct: 162 ISGRGTVVTGRVERGIIKVGEEV 184
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388
GIT+ + +D+ H +D PGH D+V NMI+GA Q D AILV+ A+ G
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP----- 55
Query: 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTW 448
TREH L R GV +IV +NK D + ++ + +++++ L F
Sbjct: 56 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 111
Query: 449 I---PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP-PPREFSKPLLMPICDVLK 504
+ L ALE A + ++L L +DS P P R KP L+PI DV
Sbjct: 112 VRGSALKALEGD----AEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIEDVFS 161
Query: 505 SQHGQVSACGKLEAGALRSGLKV 527
G++E G ++ G +V
Sbjct: 162 ISGRGTVVTGRVERGIIKVGEEV 184
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 49/222 (22%)
Query: 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
+NL I GH+D GK+TLS L A A D+ E +
Sbjct: 20 INLGIFGHIDHGKTTLSKVLT------------------------EIASTSAHDKLPESQ 55
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGM 386
+RGIT+ + + F +NY + ++D+PGH D + ++S A D A++V+DA G
Sbjct: 56 KRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP----- 110
Query: 387 NTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSC-GFKDAS 445
K T EH ++ F + +IV + K D + ++ + + L+S K++S
Sbjct: 111 ---KTQTGEHMLILDHFNI-PIIVVITKSD--NAGTEEIKRTEMIMKSILQSTHNLKNSS 164
Query: 446 LTWIPLSAL------ENQNL-VTAPDDGRLL----SWYKGPC 476
+ IP+SA E +NL +T ++ ++ S++K P
Sbjct: 165 I--IPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPL 204
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 18/149 (12%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
AI+ H D+GK+TL+ +LL G I K K A+ D A ERE
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATS---------DWMAMERE 83
Query: 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN 387
RGI++T +V F ++ V +LD+PGH+DF + T D+A++VIDA+ G E
Sbjct: 84 RGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG-VEAQTR 142
Query: 388 TAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
+ R A + +F VNKMD
Sbjct: 143 KLMDVCRMRATPVMTF--------VNKMD 163
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
+N+ ++ HVD+GK+TL+ LL+ G IT E KG+ D + ER
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAIT---------ELGSVDKGT----TRTDNTLLER 49
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGM 386
+RGIT+ + F +N V ++D+PGH DF+ + + D AIL+I A G
Sbjct: 50 QRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG------ 103
Query: 387 NTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
+ TR +R G+ I +NK+D
Sbjct: 104 --VQAQTRILFHALRKMGIPT-IFFINKID 130
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 112/274 (40%), Gaps = 85/274 (31%)
Query: 258 DKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW 317
+K+ R ++N+ +VGHVD GK+TL+ + W
Sbjct: 3 EKRKTRQAEVNIGMVGHVDHGKTTLTK---------------------------ALTGVW 35
Query: 318 ALDESAEERERGITMTVAVAYFDSKN-----------------------YHVVVLDSPGH 354
D +EE RGIT+ + A + + V +DSPGH
Sbjct: 36 T-DTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGH 94
Query: 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414
+ + M++GA+ D AILVI A+ + TREH ++ G +I+A NK
Sbjct: 95 EALMTTMLAGASLMDGAILVIAAN-------EPCPRPQTREHLMALQIIGQKNIIIAQNK 147
Query: 415 MDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWY 472
++ V K + + IK F++ ++A + IP+SAL N+
Sbjct: 148 IELVDKEKALENYRQIK----EFIKGTVAENAPI--IPISALHGANI------------- 188
Query: 473 KGPCLLDAIDSLRP-PPREFSKPLLMPICDVLKS 505
L+ AI+ P P R+ +KP P VL+S
Sbjct: 189 --DVLVKAIEEFIPTPKRDSNKP---PKMLVLRS 217
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ-KQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
N+ I H+D+GK+T + R+L+ GRI + ++H+ A +D +ER
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEG--------------AATMDFMEQER 59
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
ERGIT+T AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER 328
AI+ H D+GK+TL+ +LL G I K K A+ D E++R
Sbjct: 16 FAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATS---------DWXELEKQR 66
Query: 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
GI++T +V F K+Y + +LD+PGH DF + T D+A+ VIDA+ G
Sbjct: 67 GISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKG 118
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ-KQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
N+ I H+D+GK+T + R+L+ GRI + ++H+ A +D +ER
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG--------------AATMDFMEQER 59
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
ERGIT+T AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ-KQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
N+ I H+D+GK+T + R+L+ GRI + ++H+ A +D +ER
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG--------------AATMDFMEQER 59
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
ERGIT+T AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ-KQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
N+ I H+D+GK+T + R+L+ GRI + ++H+ A +D +ER
Sbjct: 14 NIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG--------------AATMDFMEQER 59
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
ERGIT+T AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ-KQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
N+ I H+D+GK+T + R+L+ GRI + ++H+ A +D +ER
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG--------------AATMDFMEQER 59
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
ERGIT+T AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ-KQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
N+ I H+D+GK+T + R+L+ GRI + ++H+ A +D +ER
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG--------------AATMDFMEQER 59
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
ERGIT+T AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ-KQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
N+ I H+D+GK+T + R+L+ GRI + ++H+ A +D +ER
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG--------------AATMDFMEQER 59
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
ERGIT+T AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ-KQMHKYEKEAKLQGKGSFAYAWALDESAEER 326
N+ I H+D+GK+T + R+L+ GRI + ++H+ A +D +ER
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG--------------AATMDFMEQER 59
Query: 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
ERGIT+T AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 64/271 (23%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N I+ HVD GKSTL+ RLL G I+++ EK +L LD ERE
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISER-----EKREQL-----------LDTLDVERE 51
Query: 328 RGITMTV-AVAYF----DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSF 382
RGIT+ + AV F D Y + ++D+PGH DF + + A+L+IDAS G
Sbjct: 52 RGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI- 110
Query: 383 EVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG 440
AQ + +F V+Q +V + ++ + D +K Q+
Sbjct: 111 -------------EAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQI-------- 149
Query: 441 FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG---PCLLDAIDSLRPPPR-EFSKPLL 496
+ L P++ L S +G +L+AI + PPP+ + KPL
Sbjct: 150 ---------------EEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLK 194
Query: 497 MPICDVLKSQHGQVSACGKLEAGALRSGLKV 527
I D + A ++ G ++ G K+
Sbjct: 195 ALIFDSYYDPYRGAVAFVRIFDGEVKPGDKI 225
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 114/271 (42%), Gaps = 64/271 (23%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N I+ HVD GKSTL+ RLL G I+++ EK +L LD ERE
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISER-----EKREQL-----------LDTLDVERE 51
Query: 328 RGITMTV-AVAYF----DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSF 382
RGIT+ AV F D Y + ++D+PGH DF + + A+L+IDAS G
Sbjct: 52 RGITVKXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI- 110
Query: 383 EVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG 440
AQ + +F V+Q +V + ++ + D +K Q+
Sbjct: 111 -------------EAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQI-------- 149
Query: 441 FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG---PCLLDAIDSLRPPPR-EFSKPLL 496
+ L P++ L S +G +L+AI + PPP+ + KPL
Sbjct: 150 ---------------EEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLK 194
Query: 497 MPICDVLKSQHGQVSACGKLEAGALRSGLKV 527
I D + A ++ G ++ G K+
Sbjct: 195 ALIFDSYYDPYRGAVAFVRIFDGEVKPGDKI 225
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 69/236 (29%)
Query: 258 DKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW 317
+K+ R ++N+ +VGHVD GK+TL+ + W
Sbjct: 2 EKRKSRQAEVNIGMVGHVDHGKTTLTK---------------------------ALTGVW 34
Query: 318 ALDESAEERERGITMTVAVAYFDSKN-----------------------YHVVVLDSPGH 354
D +EE RGIT+ + A + + V +D+PGH
Sbjct: 35 T-DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH 93
Query: 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414
+ + M++GA+ D AILVI A+ + TREH ++ G +I+A NK
Sbjct: 94 EALMTTMLAGASLMDGAILVIAAN-------EPCPRPQTREHLMALQIIGQKNIIIAQNK 146
Query: 415 MDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN---LVTAPDD 465
++ V K + + IK F+ ++A + IP+SAL N LV A +D
Sbjct: 147 IELVDKEKALENYRQIK----EFIEGTVAENAPI--IPISALHGANIDVLVKAIED 196
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 69/236 (29%)
Query: 258 DKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW 317
+K+ R ++N+ +VGHVD GK+TL+ + W
Sbjct: 2 EKRKSRQAEVNIGMVGHVDHGKTTLTK---------------------------ALTGVW 34
Query: 318 ALDESAEERERGITMTVAVAYFDSKN-----------------------YHVVVLDSPGH 354
D +EE RGIT+ + A + + V +D+PGH
Sbjct: 35 T-DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH 93
Query: 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414
+ + M++GA+ D AILVI A+ + TREH ++ G +I+A NK
Sbjct: 94 EALMTTMLAGASLMDGAILVIAAN-------EPCPRPQTREHLMALQIIGQKNIIIAQNK 146
Query: 415 MDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN---LVTAPDD 465
++ V K + + IK F+ ++A + IP+SAL N LV A +D
Sbjct: 147 IELVDKEKALENYRQIK----EFIEGTVAENAPI--IPISALHGANIDVLVKAIED 196
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 21/118 (17%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N +I+ H+D GKSTLS R++ + G ++ ++M A LD ERE
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREME----------------AQVLDSMDLERE 49
Query: 328 RGITM---TVAVAY--FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
RGIT+ +V + Y D + Y + +D+PGH DF + + A+LV+DA G
Sbjct: 50 RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG 107
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 21/118 (17%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N +I+ H+D GKSTLS R++ + G ++ ++M A LD ERE
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREME----------------AQVLDSMDLERE 49
Query: 328 RGITM---TVAVAY--FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
RGIT+ +V + Y D + Y + +D+PGH DF + + A+LV+DA G
Sbjct: 50 RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG 107
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER 328
AI+ H D+GK+T++ ++L L G+ Q ++G+GS +A + D E++R
Sbjct: 16 FAIISHPDAGKTTITEKVL-LFGQAIQTA-------GTVKGRGSNQHAKS-DWMEMEKQR 66
Query: 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
GI++T +V F + V +LD+PGH+DF + T D ++VIDA+ G
Sbjct: 67 GISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER 328
AI+ H D+GK+T++ ++L L G+ Q ++G+GS +A + D E++R
Sbjct: 16 FAIISHPDAGKTTITEKVL-LFGQAIQTA-------GTVKGRGSNQHAKS-DWMEMEKQR 66
Query: 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
GI++T +V F + V +LD+PGH+DF + T D ++VIDA+ G
Sbjct: 67 GISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 69/236 (29%)
Query: 258 DKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW 317
+K+ R ++N+ VGHVD GK+TL+ + W
Sbjct: 2 EKRKSRQAEVNIGXVGHVDHGKTTLTK---------------------------ALTGVW 34
Query: 318 ALDESAEERERGITMTVAVAYFDSKN-----------------------YHVVVLDSPGH 354
D +EE RGIT+ + A + + V +D+PGH
Sbjct: 35 T-DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH 93
Query: 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414
+ ++GA+ D AILVI A+ + TREH ++ G +I+A NK
Sbjct: 94 EALXTTXLAGASLXDGAILVIAAN-------EPCPRPQTREHLXALQIIGQKNIIIAQNK 146
Query: 415 MDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN---LVTAPDD 465
++ V K + + IK F+ ++A + IP+SAL N LV A +D
Sbjct: 147 IELVDKEKALENYRQIK----EFIEGTVAENAPI--IPISALHGANIDVLVKAIED 196
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 66/219 (30%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
++N+ +VGHVD GK++L+ + W D +EE
Sbjct: 8 EVNIGMVGHVDHGKTSLTK---------------------------ALTGVWT-DRHSEE 39
Query: 326 RERGITMTVAVAYFDSKN-----------------------YHVVVLDSPGHKDFVPNMI 362
RGI++ + A + + V +DSPGH+ + M+
Sbjct: 40 LRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATML 99
Query: 363 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 420
SGA+ D AILVI A+ + T+EH + G+D++I+ NK+D V +
Sbjct: 100 SGASLMDGAILVIAAN-------EPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152
Query: 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459
+++ ++ IK F++ ++A + IP+SA N+
Sbjct: 153 AEENYEQIK----EFVKGTIAENAPI--IPISAHHEANI 185
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 42/243 (17%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYA---WALDES 322
++N+ +VGHVD GK+TL + IT K+ +E K YA + ES
Sbjct: 8 EVNIGVVGHVDHGKTTL-------VQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCES 60
Query: 323 AEERERGITMTV--AVAYFDSKNY--HVVVLDSPGHKDFVPNMISGATQSDAAILVIDAS 378
++ E +T + D + + +D+PGH+ + M+SGA D AILV+ A+
Sbjct: 61 CKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN 120
Query: 379 VGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRS 438
+ TREH + GV LI+ NK+D V SK+ S Q+ F +
Sbjct: 121 -------EPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV--SKEEALSQYRQIKQFTKG 171
Query: 439 CGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFS-KPLL 496
++ + IP+SAL N+ L++ I+ ++ P R+ S KP++
Sbjct: 172 TWAENVPI--IPVSALHKINI---------------DSLIEGIEEYIKTPYRDLSQKPVM 214
Query: 497 MPI 499
+ I
Sbjct: 215 LVI 217
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYA---WALDES 322
++N+ +VGHVD GK+TL + IT K+ +E K YA + ES
Sbjct: 9 EVNIGVVGHVDHGKTTL-------VQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCES 61
Query: 323 AEERERGITMTV--AVAYFDSKNY--HVVVLDSPGHKDFVPNMISGATQSDAAILVIDAS 378
++ E +T + D + + +D+PGH+ + M+SGA D AILV+ A+
Sbjct: 62 CKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN 121
Query: 379 VGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRS 438
+ TREH + GV LI+ NK+D V SK+ S Q+ F +
Sbjct: 122 -------EPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV--SKEEALSQYRQIKQFTKG 172
Query: 439 CGFKDASLTWIPLSALENQNL 459
++ + IP+SAL N+
Sbjct: 173 TWAENVPI--IPVSALHKINI 191
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 24/198 (12%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
++N+ +VGHVD GK+TL + IT K+ +E G + ES ++
Sbjct: 8 EVNIGVVGHVDHGKTTL-------VQAITGIWTSKHSEETIKLGYAETNIG--VCESCKK 58
Query: 326 RERGITMTV--AVAYFDSKNY--HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS 381
E +T + D + + +D+PGH+ + M+SGA D AILV+ A+
Sbjct: 59 PEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN--- 115
Query: 382 FEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441
+ TREH + GV LI+ NK+D V SK+ S Q+ F +
Sbjct: 116 ----EPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV--SKEEALSQYRQIKQFTKGTWA 169
Query: 442 KDASLTWIPLSALENQNL 459
++ + IP+SAL N+
Sbjct: 170 ENVPI--IPVSALHKINI 185
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE 325
++N+ +VGHVD GK+TL + + G T K++ E + A+ + S +
Sbjct: 8 EVNIGVVGHVDHGKTTL---VQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCK- 63
Query: 326 RERGITMTVAVAYFDSKNY--HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFE 383
+ D + + +D+PGH+ + M+SGA D AILV+ A+
Sbjct: 64 ---------SCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN----- 109
Query: 384 VGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443
+ TREH + GV LI+ NK+D V SK+ S Q+ F + ++
Sbjct: 110 --EPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV--SKEEALSQYRQIKQFTKGTWAEN 165
Query: 444 ASLTWIPLSALENQNL 459
+ IP+SAL N+
Sbjct: 166 VPI--IPVSALHKINI 179
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 29/156 (18%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N+ I HVD+GK+T + R+LF G + K ++ G+ W + +E+E
Sbjct: 15 NIGICAHVDAGKTTTTERVLFYTG-VNHKLGEVHD--------GAATTDWMV----QEQE 61
Query: 328 RGITMT-VAVAYF------DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
RGIT+T AV F NY V V+D+PGH DF + + ++ V+D +V
Sbjct: 62 RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------TIEVERSLRVLDGAVV 114
Query: 381 SFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
F G + + + + +GV + IV VNKMD
Sbjct: 115 VF-CGTSGVEPQSETVWRQANKYGVPR-IVYVNKMD 148
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 22/149 (14%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N+ I+ H+D+GK+T + R+L+ GRI HK + + A +D +E++
Sbjct: 12 NIGIIAHIDAGKTTTTERILYYTGRI-----HKIGE--------THEGASQMDWMEQEQD 58
Query: 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN 387
RGIT+T A + + V ++D+PGH DF + D A+ V+DA G
Sbjct: 59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG------- 111
Query: 388 TAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
+ T + ++GV + IV VNKMD
Sbjct: 112 -VEPQTETVWRQATTYGVPR-IVFVNKMD 138
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 22/149 (14%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N+ I+ H+D+GK+T + R+L+ GRI HK + + A +D +E++
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRI-----HKIGE--------THEGASQMDWMEQEQD 58
Query: 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN 387
RGIT+T A + + V ++D+PGH DF + D A+ V+DA G
Sbjct: 59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG------- 111
Query: 388 TAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
+ T + ++GV + IV VNKMD
Sbjct: 112 -VEPQTETVWRQATTYGVPR-IVFVNKMD 138
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 41/172 (23%)
Query: 262 DRMTQL-NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALD 320
D++T + N++++ HVD GKSTL+ L+ G I+ A G+ F D
Sbjct: 14 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIIS----------AAKAGEARFT-----D 58
Query: 321 ESAEERERGITM-TVAVAYF---------------DSKNYHVVVLDSPGHKDFVPNMISG 364
+E+ERGIT+ + A++ + D ++ + ++DSPGH DF + +
Sbjct: 59 TRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAA 118
Query: 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
+D A++V+D G V + T L + + I+ +V +NK+D
Sbjct: 119 LRVTDGALVVVDTIEG---VCVQTETVLRQALGERIKP------VVVINKVD 161
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 41/172 (23%)
Query: 262 DRMTQL-NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALD 320
D++T + N++++ HVD GKSTL+ L+ G I+ A G+ F D
Sbjct: 14 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIIS----------AAKAGEARFT-----D 58
Query: 321 ESAEERERGITM-TVAVAYF---------------DSKNYHVVVLDSPGHKDFVPNMISG 364
+E+ERGIT+ + A++ + D ++ + ++DSPGH DF + +
Sbjct: 59 TRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAA 118
Query: 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
+D A++V+D G V + T L + + I+ +V +NK+D
Sbjct: 119 LRVTDGALVVVDTIEG---VCVQTETVLRQALGERIKP------VVVINKVD 161
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N+ I+ H+D+GK+T + R+L+ GRI HK + + A +D +E++
Sbjct: 12 NIGIIAHIDAGKTTTTERILYYTGRI-----HKIGE--------THEGASQMDWMEQEQD 58
Query: 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN 387
RGIT+T A + + V ++D+PGH D + D A+ V+DA G
Sbjct: 59 RGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSG------- 111
Query: 388 TAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
+ T + ++GV + IV VNKMD
Sbjct: 112 -VEPQTETVWRQATTYGVPR-IVFVNKMD 138
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N+ I+ H+D+GK+T + R+L+ GRI HK + + A +D +E++
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRI-----HKIGE--------THEGASQMDWMEQEQD 58
Query: 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN 387
RGIT+T A + + V ++D+PGH D + D A+ V+DA G
Sbjct: 59 RGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSG------- 111
Query: 388 TAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
+ T + ++GV + IV VNKMD
Sbjct: 112 -VEPQTETVWRQATTYGVPR-IVFVNKMD 138
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 20/114 (17%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N+ I H+D+GK+T + R+LF G + K ++ A +D +E+E
Sbjct: 11 NIGISAHIDAGKTTTTERILFYTG-VNHKIGEVHDGAA------------TMDWMEQEQE 57
Query: 328 RGITMTVAV--AYFD--SKNYH---VVVLDSPGHKDFVPNMISGATQSDAAILV 374
RGIT+T A A++ +K Y + ++D+PGH DF + D A++V
Sbjct: 58 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMV 111
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 20/114 (17%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N+ I H+D+GK+T + R+LF G + K ++ A +D +E+E
Sbjct: 12 NIGISAHIDAGKTTTTERILFYTG-VNHKIGEVHDGAA------------TMDWMEQEQE 58
Query: 328 RGITMTVAV--AYFD--SKNYH---VVVLDSPGHKDFVPNMISGATQSDAAILV 374
RGIT+T A A++ +K Y + ++D+PGH DF + D A++V
Sbjct: 59 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMV 112
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
+A+VGH SGK+TL+ LL+ G E+ +++ +G+ D + E +
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTG--------AKERRGRVE-EGTTT----TDYTPEAKL 57
Query: 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN 387
T+ VA + + V +LD+PG+ DFV + +DAA++ + A G V +
Sbjct: 58 HRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG---VQVG 114
Query: 388 TAKGLTREHAQLIRSFGVDQLIVAVNKMD 416
T + T + G+ +++V V K+D
Sbjct: 115 TERAWT-----VAERLGLPRMVV-VTKLD 137
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 40/156 (25%)
Query: 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER 328
+ I+GHVD GK+TL L I ++ E+
Sbjct: 11 VTIMGHVDHGKTTL-------LDAIRHSKV------------------------TEQEAG 39
Query: 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388
GIT + + + LD+PGH+ F GA +D ILV+ A G V T
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG---VMPQT 96
Query: 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424
+ + A + +IVA+NKMD + + DR
Sbjct: 97 VEAINHAKAANV------PIIVAINKMDKPEANPDR 126
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 41/113 (36%)
Query: 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327
N+ I H+D+GK+T + R+L+ GRI
Sbjct: 9 NIGIAAHIDAGKTTTTERILYYTGRI---------------------------------- 34
Query: 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
AV K++ + ++D+PGH DF + D AI+V D+S G
Sbjct: 35 -------AVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 80
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 42/192 (21%)
Query: 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER 328
+ I+GHVD GK+TL L ++ + Q+ E Q G+F + E
Sbjct: 7 VTIMGHVDHGKTTL-------LDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEK------ 53
Query: 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388
+ LD+PGH F G +D ILV+ A G + + +
Sbjct: 54 -----------------ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVES 96
Query: 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTW 448
+ H +++A+NK D + ++ +K +L + C +
Sbjct: 97 IQHAKDAHV---------PIVLAINKCDKAEADPEK---VKKELLAYDVVCEDYGGDVQA 144
Query: 449 IPLSALENQNLV 460
+ +SAL +N++
Sbjct: 145 VHVSALTGENMM 156
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380
GIT + + +++N + LD+PGH F GA +D +LV+ A G
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG 87
>pdb|1KTD|A Chain A, Crystal Structure Of Class Ii Mhc Molecule Iek Bound To
Pigeon Cytochrome C Peptide
pdb|1KTD|C Chain C, Crystal Structure Of Class Ii Mhc Molecule Iek Bound To
Pigeon Cytochrome C Peptide
Length = 182
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 304
HT + E ++LPDK+G+ M + + HVD KS RL ++ K
Sbjct: 4 EHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRL------------EEFAKF 51
Query: 305 AKLQGKGSFA 314
A + +G+ A
Sbjct: 52 ASFEAQGALA 61
>pdb|3QIU|A Chain A, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
Length = 179
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 304
HT + E ++LPDK+G+ M + + HVD KS RL ++ K
Sbjct: 2 EHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRL------------EEFAKF 49
Query: 305 AKLQGKGSFA 314
A + +G+ A
Sbjct: 50 ASFEAQGALA 59
>pdb|1R5V|A Chain A, Evidence That Structural Rearrangements AndOR FLEXIBILITY
DURING TCR Binding Can Contribute To T-Cell Activation
pdb|1R5V|C Chain C, Evidence That Structural Rearrangements AndOR FLEXIBILITY
DURING TCR Binding Can Contribute To T-Cell Activation
pdb|1R5W|A Chain A, Evidence That Structural Rearrangements And/or Flexibility
During Tcr Binding Can Contribute To T-cell Activation
pdb|1R5W|C Chain C, Evidence That Structural Rearrangements And/or Flexibility
During Tcr Binding Can Contribute To T-cell Activation
Length = 180
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 304
HT + E ++LPDK+G+ M + + HVD KS RL ++ K
Sbjct: 2 EHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRL------------EEFAKF 49
Query: 305 AKLQGKGSFA 314
A + +G+ A
Sbjct: 50 ASFEAQGALA 59
>pdb|1KT2|A Chain A, Crystal Structure Of Class Ii Mhc Molecule Iek Bound To
Moth Cytochrome C Peptide
pdb|1KT2|C Chain C, Crystal Structure Of Class Ii Mhc Molecule Iek Bound To
Moth Cytochrome C Peptide
Length = 182
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 304
HT + E ++LPDK+G+ M + + HVD KS RL ++ K
Sbjct: 4 EHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRL------------EEFAKF 51
Query: 305 AKLQGKGSFA 314
A + +G+ A
Sbjct: 52 ASFEAQGALA 61
>pdb|1IEA|A Chain A, Histocompatibility Antigen
pdb|1IEA|C Chain C, Histocompatibility Antigen
pdb|1IEB|A Chain A, Histocompatibility Antigen
pdb|1IEB|C Chain C, Histocompatibility Antigen
Length = 192
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 304
HT + E ++LPDK+G+ M + + HVD KS RL ++ K
Sbjct: 4 EHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRL------------EEFAKF 51
Query: 305 AKLQGKGSFA 314
A + +G+ A
Sbjct: 52 ASFEAQGALA 61
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408
+D+PGH+ F G +D AIL++D + G K T+E ++R +
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRXYRT-PF 125
Query: 409 IVAVNKMDAVQ 419
+VA NK+D +
Sbjct: 126 VVAANKIDRIH 136
>pdb|1FNE|A Chain A, Histocompatibility Antigen
pdb|1FNE|C Chain C, Histocompatibility Antigen
pdb|1FNG|A Chain A, Histocompatibility Antigen
pdb|1FNG|C Chain C, Histocompatibility Antigen
pdb|3QIW|A Chain A, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 192
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 304
HT + E ++LPDK+G+ M + + HVD KS RL ++ K
Sbjct: 4 EHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRL------------EEFAKF 51
Query: 305 AKLQGKGSFA 314
A + +G+ A
Sbjct: 52 ASFEAQGALA 61
>pdb|3QIB|A Chain A, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 193
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 304
HT + E ++LPDK+G+ M + + HVD KS RL ++ K
Sbjct: 4 EHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRL------------EEFAKF 51
Query: 305 AKLQGKGSFA 314
A + +G+ A
Sbjct: 52 ASFEAQGALA 61
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408
+D+PGH+ F G +D AIL++D + G K T+E ++R +
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGF--------KPQTQEALNILRMYRT-PF 125
Query: 409 IVAVNKMDAVQ 419
+VA NK+D +
Sbjct: 126 VVAANKIDRIH 136
>pdb|1I3R|A Chain A, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|C Chain C, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|E Chain E, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|G Chain G, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
Length = 192
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 304
HT + + ++LPDK+G+ M + + HVD KS RL ++ K
Sbjct: 4 EHTIIQAQFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRL------------EEFAKF 51
Query: 305 AKLQGKGSFA 314
A + +G+ A
Sbjct: 52 ASFEAQGALA 61
>pdb|1NJ3|A Chain A, Structure And Ubiquitin Interactions Of The Conserved
Nzf Domain Of Npl4
pdb|1Q5W|A Chain A, Ubiquitin Recognition By Npl4 Zinc-Fingers
Length = 31
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 46 SKPRVWSCAICTYDNEEGMSVCDICGVLRT 75
S +W+C CT+ N+ G C++C + RT
Sbjct: 2 STSAMWACQHCTFMNQPGTGHCEMCSLPRT 31
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 26/130 (20%)
Query: 343 NYHVVVLDSPGHKDFVPNMI--------SGATQSDAAILVIDASVGSFEVGMNTAKGLTR 394
N ++++D+ G +P I S A SDA ILVID++ N +
Sbjct: 225 NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSE-----NLLIETLQ 279
Query: 395 EHAQLIRSFGVD--QLIVAVNKMDAVQ---YSKDRFDSIKVQLGTFLRSCGFKDASLTWI 449
+++R GV ++V +NK+D + Y K D ++ +L L S F I
Sbjct: 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKK--LDLVE-KLSKELYSPIF-----DVI 331
Query: 450 PLSALENQNL 459
P+SAL+ NL
Sbjct: 332 PISALKRTNL 341
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 330 ITMTVAVAYFDSKNYHVVVLDSPG-HKD---FVPNM--ISGATQSDAAILVIDASVG 380
I + V F ++N+ ++++D+ G HK M ++ A Q D + V+DAS+G
Sbjct: 170 IIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases.
pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 182
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 249 YKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMH 299
Y +K ++P KG AIVG SGKS + +LF+LG ++ K M
Sbjct: 15 YGNKKVVIPFSKG------FTAIVGANGSGKSNIGDAILFVLGGLSAKAMR 59
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 362 ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD--QLIVAVNKMDAVQ 419
+S A SDA ILVID++ N + +++R GV ++V +NK+D +
Sbjct: 252 LSEAKYSDALILVIDSTFSE-----NLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306
Query: 420 ---YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459
Y K D ++ +L L S F IP+SAL+ NL
Sbjct: 307 GDLYKK--LDLVE-KLSKELYSPIF-----DVIPISALKRTNL 341
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 362 ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD--QLIVAVNKMDAVQ 419
+S A SDA ILVID++ N + +++R GV ++V +NK+D +
Sbjct: 252 LSEAKYSDALILVIDSTFSE-----NLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306
Query: 420 ---YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459
Y K D ++ +L L S F IP+SAL+ NL
Sbjct: 307 GDLYKK--LDLVE-KLSKELYSPIF-----DVIPISALKRTNL 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,071,750
Number of Sequences: 62578
Number of extensions: 543831
Number of successful extensions: 1336
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 115
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)