Query 009378
Match_columns 536
No_of_seqs 367 out of 2544
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 12:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0458 Elongation factor 1 al 100.0 4.4E-54 9.5E-59 456.8 28.6 272 262-535 173-446 (603)
2 COG5256 TEF1 Translation elong 100.0 6.2E-54 1.4E-58 442.5 26.3 267 263-534 4-271 (428)
3 PLN00043 elongation factor 1-a 100.0 1.2E-44 2.7E-49 389.8 27.3 267 263-534 4-273 (447)
4 PTZ00141 elongation factor 1- 100.0 2.5E-44 5.3E-49 387.6 27.9 267 263-534 4-273 (446)
5 PRK12317 elongation factor 1-a 100.0 1.5E-42 3.3E-47 372.3 27.1 260 263-534 3-265 (425)
6 COG2895 CysN GTPases - Sulfate 100.0 5.8E-43 1.3E-47 353.0 21.1 260 263-535 3-264 (431)
7 TIGR00483 EF-1_alpha translati 100.0 2.4E-41 5.2E-46 363.2 27.1 263 263-534 4-267 (426)
8 TIGR02034 CysN sulfate adenyly 100.0 3.1E-40 6.8E-45 352.4 25.2 254 267-534 1-257 (406)
9 PRK05124 cysN sulfate adenylyl 100.0 6.6E-40 1.4E-44 355.7 26.8 260 262-534 23-285 (474)
10 KOG0459 Polypeptide release fa 100.0 5.7E-39 1.2E-43 328.1 17.9 268 263-535 76-346 (501)
11 PRK05506 bifunctional sulfate 100.0 1.2E-37 2.5E-42 349.7 26.0 258 263-534 21-281 (632)
12 CHL00071 tufA elongation facto 100.0 2.8E-36 6E-41 322.4 26.6 246 262-532 8-258 (409)
13 PRK12735 elongation factor Tu; 100.0 3.2E-36 6.9E-41 320.7 26.9 241 262-533 8-251 (396)
14 PLN03126 Elongation factor Tu; 100.0 3.5E-36 7.7E-41 325.9 25.4 248 262-534 77-329 (478)
15 TIGR00485 EF-Tu translation el 100.0 8.3E-36 1.8E-40 317.4 26.5 239 262-533 8-249 (394)
16 PRK12736 elongation factor Tu; 100.0 7.5E-36 1.6E-40 317.6 26.0 239 262-533 8-249 (394)
17 PRK00049 elongation factor Tu; 100.0 1.6E-35 3.5E-40 315.3 28.1 241 262-533 8-251 (396)
18 PLN03127 Elongation factor Tu; 100.0 9.1E-34 2E-38 305.4 26.8 237 262-532 57-299 (447)
19 COG0050 TufB GTPases - transla 100.0 1.1E-33 2.4E-38 279.7 19.6 237 262-531 8-247 (394)
20 cd01883 EF1_alpha Eukaryotic e 100.0 6.1E-33 1.3E-37 272.6 19.0 216 268-487 1-218 (219)
21 cd04166 CysN_ATPS CysN_ATPS su 100.0 1.9E-32 4E-37 267.0 19.5 207 268-487 1-207 (208)
22 KOG0460 Mitochondrial translat 100.0 1.9E-32 4.2E-37 275.3 19.0 241 262-532 50-292 (449)
23 PRK10512 selenocysteinyl-tRNA- 100.0 1.3E-31 2.8E-36 298.5 24.6 212 267-534 1-214 (614)
24 PTZ00327 eukaryotic translatio 100.0 9.7E-32 2.1E-36 289.7 21.5 216 263-533 31-289 (460)
25 TIGR00475 selB selenocysteine- 100.0 1.2E-30 2.6E-35 289.6 24.3 215 267-534 1-216 (581)
26 TIGR03680 eif2g_arch translati 100.0 1.7E-30 3.6E-35 277.7 22.6 215 264-533 2-252 (406)
27 KOG0462 Elongation factor-type 100.0 3.1E-31 6.7E-36 280.1 16.6 222 264-534 58-284 (650)
28 TIGR01394 TypA_BipA GTP-bindin 100.0 2.1E-30 4.7E-35 287.5 23.2 233 267-532 2-238 (594)
29 cd01884 EF_Tu EF-Tu subfamily. 100.0 3.7E-30 8.1E-35 248.9 19.9 192 266-487 2-194 (195)
30 PRK04000 translation initiatio 100.0 1.4E-29 3.1E-34 270.8 22.5 216 263-533 6-257 (411)
31 COG0481 LepA Membrane GTPase L 100.0 7.3E-30 1.6E-34 266.0 19.3 225 263-536 6-237 (603)
32 PRK10218 GTP-binding protein; 100.0 1.1E-28 2.4E-33 273.8 24.6 234 265-532 4-242 (607)
33 TIGR01393 lepA GTP-binding pro 100.0 1.1E-28 2.5E-33 274.2 23.5 221 265-534 2-229 (595)
34 PRK05433 GTP-binding protein L 100.0 1.1E-28 2.3E-33 274.8 22.1 222 264-534 5-233 (600)
35 COG3276 SelB Selenocysteine-sp 100.0 1.2E-28 2.7E-33 256.8 19.7 210 267-535 1-212 (447)
36 COG1217 TypA Predicted membran 100.0 4.3E-28 9.3E-33 252.2 22.0 236 264-532 3-242 (603)
37 COG5258 GTPBP1 GTPase [General 100.0 1.4E-27 3E-32 243.5 20.7 276 214-535 66-389 (527)
38 KOG0463 GTP-binding protein GP 100.0 9.2E-28 2E-32 243.7 16.6 288 195-535 69-408 (641)
39 COG5257 GCD11 Translation init 100.0 1.9E-27 4.1E-32 238.1 17.0 214 264-532 8-257 (415)
40 PF00009 GTP_EFTU: Elongation 99.9 2E-27 4.4E-32 227.5 15.5 182 264-485 1-186 (188)
41 TIGR00487 IF-2 translation ini 99.9 1.9E-26 4.2E-31 255.5 24.6 208 263-532 84-299 (587)
42 PRK05306 infB translation init 99.9 3.9E-26 8.4E-31 258.9 23.2 208 263-532 287-501 (787)
43 COG0532 InfB Translation initi 99.9 1.2E-25 2.6E-30 239.7 20.4 206 264-532 3-219 (509)
44 PRK04004 translation initiatio 99.9 2.3E-25 4.9E-30 247.4 22.6 215 263-533 3-271 (586)
45 TIGR00491 aIF-2 translation in 99.9 4.1E-25 8.9E-30 244.7 22.4 213 265-533 3-269 (590)
46 KOG0461 Selenocysteine-specifi 99.9 9.1E-25 2E-29 220.2 20.1 215 266-530 7-238 (522)
47 CHL00189 infB translation init 99.9 6.7E-25 1.5E-29 246.9 20.6 208 263-532 241-459 (742)
48 PRK07560 elongation factor EF- 99.9 1.8E-24 4E-29 246.5 21.2 247 263-534 17-330 (731)
49 KOG1145 Mitochondrial translat 99.9 2.7E-24 5.8E-29 227.6 19.8 209 263-530 150-363 (683)
50 PRK12739 elongation factor G; 99.9 2.9E-24 6.4E-29 243.6 21.1 227 264-531 6-343 (691)
51 PRK00007 elongation factor G; 99.9 6.1E-24 1.3E-28 241.0 22.5 227 263-530 7-345 (693)
52 TIGR00484 EF-G translation elo 99.9 1.4E-23 3E-28 238.1 23.3 228 263-531 7-344 (689)
53 KOG1143 Predicted translation 99.9 8.5E-24 1.8E-28 214.9 15.8 272 218-534 114-442 (591)
54 TIGR00503 prfC peptide chain r 99.9 7E-23 1.5E-27 225.0 22.9 236 262-534 7-336 (527)
55 PRK00741 prfC peptide chain re 99.9 8.2E-23 1.8E-27 224.4 23.2 238 263-534 7-335 (526)
56 cd01885 EF2 EF2 (for archaea a 99.9 2E-23 4.4E-28 205.8 15.4 190 267-487 1-222 (222)
57 PRK13351 elongation factor G; 99.9 8E-23 1.7E-27 232.1 22.1 229 264-533 6-344 (687)
58 cd01888 eIF2_gamma eIF2-gamma 99.9 8.7E-23 1.9E-27 198.2 15.9 168 267-488 1-202 (203)
59 COG0480 FusA Translation elong 99.9 2.9E-22 6.3E-27 224.4 22.1 233 263-533 7-346 (697)
60 PRK12740 elongation factor G; 99.9 4.1E-22 8.9E-27 225.7 20.9 221 272-533 1-327 (668)
61 cd01889 SelB_euk SelB subfamil 99.9 2.8E-22 6.1E-27 192.2 15.7 171 267-487 1-188 (192)
62 cd04171 SelB SelB subfamily. 99.9 6.2E-22 1.4E-26 182.2 17.2 155 267-461 1-156 (164)
63 cd04165 GTPBP1_like GTPBP1-lik 99.9 2E-22 4.3E-27 199.1 14.5 177 268-487 1-224 (224)
64 cd01891 TypA_BipA TypA (tyrosi 99.9 1.1E-21 2.3E-26 188.5 16.9 188 266-486 2-193 (194)
65 TIGR00490 aEF-2 translation el 99.9 4.4E-22 9.6E-27 226.6 14.5 246 264-534 17-329 (720)
66 cd01890 LepA LepA subfamily. 99.9 2.2E-21 4.8E-26 182.3 15.6 162 267-461 1-167 (179)
67 PLN00116 translation elongatio 99.9 3E-21 6.5E-26 223.0 19.8 151 263-437 16-190 (843)
68 PRK14845 translation initiatio 99.9 8.4E-21 1.8E-25 219.8 21.9 181 327-532 491-725 (1049)
69 PTZ00416 elongation factor 2; 99.9 1.1E-20 2.4E-25 218.1 21.5 150 264-437 17-184 (836)
70 cd00881 GTP_translation_factor 99.9 9.4E-21 2E-25 178.4 15.9 168 268-461 1-177 (189)
71 cd04167 Snu114p Snu114p subfam 99.9 1.4E-20 3E-25 183.9 16.4 173 267-460 1-192 (213)
72 cd04168 TetM_like Tet(M)-like 99.8 2.7E-20 5.8E-25 185.4 15.8 130 268-419 1-130 (237)
73 cd01886 EF-G Elongation factor 99.8 1.7E-20 3.8E-25 190.2 14.2 165 268-461 1-166 (270)
74 KOG0465 Mitochondrial elongati 99.8 4.6E-20 9.9E-25 197.6 17.1 234 264-535 37-378 (721)
75 COG1159 Era GTPase [General fu 99.8 6E-20 1.3E-24 184.4 14.9 152 263-461 3-162 (298)
76 COG4108 PrfC Peptide chain rel 99.8 7.3E-20 1.6E-24 190.2 15.7 239 263-535 9-338 (528)
77 PF02421 FeoB_N: Ferrous iron 99.8 3E-20 6.4E-25 173.3 11.4 143 267-461 1-151 (156)
78 cd04169 RF3 RF3 subfamily. Pe 99.8 1.2E-19 2.6E-24 183.8 15.9 137 266-420 2-138 (267)
79 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.8E-19 6E-24 165.7 15.5 150 268-461 2-156 (168)
80 KOG1144 Translation initiation 99.8 2.2E-19 4.8E-24 194.9 16.1 215 261-531 470-736 (1064)
81 COG1160 Predicted GTPases [Gen 99.8 3.4E-19 7.3E-24 187.9 16.1 156 264-462 176-342 (444)
82 COG1160 Predicted GTPases [Gen 99.8 2.5E-19 5.3E-24 188.9 14.2 152 267-485 4-164 (444)
83 cd01895 EngA2 EngA2 subfamily. 99.8 1.9E-18 4.1E-23 159.5 15.5 153 266-461 2-165 (174)
84 KOG0466 Translation initiation 99.8 2.8E-19 6.1E-24 178.3 10.3 214 264-532 36-296 (466)
85 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.1E-19 1.3E-23 163.7 11.7 156 268-461 1-159 (167)
86 PRK00093 GTP-binding protein D 99.8 2.2E-18 4.7E-23 185.7 16.4 154 265-463 172-336 (435)
87 TIGR00436 era GTP-binding prot 99.8 3.7E-18 7.9E-23 173.0 16.6 145 268-461 2-154 (270)
88 TIGR03594 GTPase_EngA ribosome 99.8 2.6E-18 5.6E-23 184.6 16.3 156 264-463 170-336 (429)
89 PRK15494 era GTPase Era; Provi 99.8 7E-18 1.5E-22 176.5 16.9 149 264-461 50-206 (339)
90 cd04170 EF-G_bact Elongation f 99.8 6.8E-18 1.5E-22 170.7 14.0 130 268-419 1-130 (268)
91 cd04124 RabL2 RabL2 subfamily. 99.8 2.7E-17 6E-22 152.9 16.4 146 267-461 1-148 (161)
92 TIGR03598 GTPase_YsxC ribosome 99.8 2.2E-17 4.7E-22 156.7 15.8 151 264-460 16-179 (179)
93 cd04154 Arl2 Arl2 subfamily. 99.8 9.4E-18 2E-22 157.7 13.0 151 264-461 12-165 (173)
94 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.6E-17 3.5E-22 153.2 14.3 150 266-461 2-154 (164)
95 cd01864 Rab19 Rab19 subfamily. 99.7 2.7E-17 5.8E-22 152.9 15.8 151 266-461 3-156 (165)
96 cd01894 EngA1 EngA1 subfamily. 99.7 1.7E-17 3.6E-22 151.4 13.1 140 270-461 1-148 (157)
97 cd01861 Rab6 Rab6 subfamily. 99.7 5.9E-17 1.3E-21 149.2 16.2 148 267-461 1-152 (161)
98 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3E-17 6.5E-22 150.5 13.9 148 267-461 2-152 (162)
99 cd04119 RJL RJL (RabJ-Like) su 99.7 3.2E-17 7E-22 151.1 14.0 154 267-461 1-157 (168)
100 smart00173 RAS Ras subfamily o 99.7 2.9E-17 6.3E-22 151.9 13.2 152 267-461 1-152 (164)
101 cd04157 Arl6 Arl6 subfamily. 99.7 3.9E-17 8.4E-22 150.4 13.9 149 268-461 1-154 (162)
102 cd01865 Rab3 Rab3 subfamily. 99.7 8.3E-17 1.8E-21 150.0 16.0 150 267-461 2-153 (165)
103 PRK00089 era GTPase Era; Revie 99.7 6.7E-17 1.5E-21 165.2 16.4 151 264-461 3-161 (292)
104 cd04116 Rab9 Rab9 subfamily. 99.7 4.4E-17 9.5E-22 152.0 13.8 155 265-461 4-161 (170)
105 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 3.8E-17 8.2E-22 157.8 13.7 154 267-461 1-158 (201)
106 cd04149 Arf6 Arf6 subfamily. 99.7 4.3E-17 9.3E-22 153.3 13.7 151 264-461 7-160 (168)
107 cd01860 Rab5_related Rab5-rela 99.7 1E-16 2.2E-21 147.9 15.7 150 266-461 1-153 (163)
108 cd04122 Rab14 Rab14 subfamily. 99.7 1E-16 2.2E-21 149.3 15.8 149 267-461 3-154 (166)
109 cd01898 Obg Obg subfamily. Th 99.7 6.3E-17 1.4E-21 150.4 14.3 147 268-461 2-161 (170)
110 cd04106 Rab23_lke Rab23-like s 99.7 1.2E-16 2.5E-21 147.4 15.9 149 267-461 1-153 (162)
111 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.1E-16 2.5E-21 148.7 15.7 150 266-461 2-154 (166)
112 cd01862 Rab7 Rab7 subfamily. 99.7 1.2E-16 2.7E-21 148.4 16.0 151 267-461 1-157 (172)
113 KOG0052 Translation elongation 99.7 7E-18 1.5E-22 174.7 8.2 239 263-525 4-250 (391)
114 KOG0469 Elongation factor 2 [T 99.7 5.3E-17 1.2E-21 170.4 14.8 133 262-418 15-163 (842)
115 cd04113 Rab4 Rab4 subfamily. 99.7 9.9E-17 2.2E-21 148.1 15.1 149 267-461 1-152 (161)
116 cd04136 Rap_like Rap-like subf 99.7 5.3E-17 1.1E-21 149.6 13.1 152 267-461 2-153 (163)
117 cd01866 Rab2 Rab2 subfamily. 99.7 1.3E-16 2.8E-21 149.3 15.8 149 267-461 5-156 (168)
118 PRK03003 GTP-binding protein D 99.7 5.2E-17 1.1E-21 177.1 15.3 154 265-463 210-374 (472)
119 cd01879 FeoB Ferrous iron tran 99.7 3.8E-17 8.3E-22 149.6 12.0 139 271-461 1-147 (158)
120 cd01867 Rab8_Rab10_Rab13_like 99.7 1.3E-16 2.9E-21 148.8 15.8 150 266-461 3-155 (167)
121 cd04151 Arl1 Arl1 subfamily. 99.7 5.6E-17 1.2E-21 149.8 13.1 147 268-461 1-150 (158)
122 cd04127 Rab27A Rab27a subfamil 99.7 8.6E-17 1.9E-21 151.4 14.5 152 265-461 3-167 (180)
123 cd04140 ARHI_like ARHI subfami 99.7 1.4E-16 3.1E-21 148.3 15.8 148 267-461 2-155 (165)
124 cd01863 Rab18 Rab18 subfamily. 99.7 8.9E-17 1.9E-21 148.2 14.2 148 267-461 1-152 (161)
125 cd00154 Rab Rab family. Rab G 99.7 1.3E-16 2.8E-21 144.6 14.7 149 267-461 1-152 (159)
126 TIGR03594 GTPase_EngA ribosome 99.7 9.9E-17 2.2E-21 172.4 16.4 142 268-461 1-150 (429)
127 cd04175 Rap1 Rap1 subgroup. T 99.7 7.4E-17 1.6E-21 149.6 13.4 149 267-461 2-153 (164)
128 cd01897 NOG NOG1 is a nucleola 99.7 1.5E-16 3.2E-21 147.8 15.2 147 267-461 1-158 (168)
129 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.2E-16 2.5E-21 148.8 14.0 149 267-461 1-151 (159)
130 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.6E-16 3.5E-21 149.7 15.0 151 268-461 2-155 (170)
131 smart00175 RAB Rab subfamily o 99.7 2.1E-16 4.6E-21 145.5 15.5 149 267-461 1-152 (164)
132 cd04112 Rab26 Rab26 subfamily. 99.7 1.8E-16 3.8E-21 152.0 15.4 150 267-461 1-153 (191)
133 cd04118 Rab24 Rab24 subfamily. 99.7 1.7E-16 3.7E-21 151.6 15.1 154 267-461 1-156 (193)
134 PTZ00369 Ras-like protein; Pro 99.7 1.3E-16 2.8E-21 152.6 14.1 155 264-461 3-157 (189)
135 TIGR00231 small_GTP small GTP- 99.7 1.3E-16 2.8E-21 143.5 13.4 150 267-461 2-154 (161)
136 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.6E-16 3.4E-21 149.9 14.3 150 265-461 14-166 (174)
137 KOG0464 Elongation factor G [T 99.7 5.8E-18 1.3E-22 174.3 4.8 137 262-420 33-169 (753)
138 cd01868 Rab11_like Rab11-like. 99.7 2.7E-16 5.9E-21 145.8 15.6 150 266-461 3-155 (165)
139 cd04163 Era Era subfamily. Er 99.7 4.1E-16 8.8E-21 142.3 16.5 150 265-461 2-159 (168)
140 PRK03003 GTP-binding protein D 99.7 1.4E-16 3E-21 173.8 15.8 144 266-461 38-189 (472)
141 cd04121 Rab40 Rab40 subfamily. 99.7 3.5E-16 7.6E-21 150.6 16.7 151 265-461 5-157 (189)
142 KOG0092 GTPase Rab5/YPT51 and 99.7 2.5E-16 5.4E-21 148.7 15.1 161 264-484 3-165 (200)
143 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.5E-16 3.2E-21 144.8 13.2 137 267-461 2-147 (157)
144 PLN03118 Rab family protein; P 99.7 2.4E-16 5.1E-21 153.6 15.4 153 263-461 11-167 (211)
145 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1E-16 2.3E-21 152.6 12.6 157 265-461 2-160 (183)
146 cd04120 Rab12 Rab12 subfamily. 99.7 3.3E-16 7.2E-21 152.4 16.3 150 267-461 1-153 (202)
147 cd04110 Rab35 Rab35 subfamily. 99.7 4E-16 8.6E-21 150.7 16.6 152 265-461 5-157 (199)
148 cd04176 Rap2 Rap2 subgroup. T 99.7 1.6E-16 3.4E-21 147.1 13.2 148 267-461 2-153 (163)
149 PLN00223 ADP-ribosylation fact 99.7 2E-16 4.4E-21 150.8 14.2 151 264-461 15-168 (181)
150 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.2E-16 2.7E-21 147.0 12.0 146 268-461 1-150 (158)
151 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.2E-16 2.7E-21 147.1 12.1 149 268-461 1-152 (160)
152 smart00177 ARF ARF-like small 99.7 2.5E-16 5.4E-21 149.0 14.3 151 264-461 11-164 (175)
153 PRK04213 GTP-binding protein; 99.7 2.2E-16 4.7E-21 152.0 14.0 153 265-461 8-182 (201)
154 cd00157 Rho Rho (Ras homology) 99.7 3.9E-16 8.5E-21 145.0 15.0 154 267-461 1-163 (171)
155 cd04109 Rab28 Rab28 subfamily. 99.7 5E-16 1.1E-20 151.9 16.5 148 267-461 1-156 (215)
156 cd00877 Ran Ran (Ras-related n 99.7 3.2E-16 6.9E-21 146.9 14.5 147 267-461 1-149 (166)
157 cd04158 ARD1 ARD1 subfamily. 99.7 2.4E-16 5.3E-21 147.8 13.4 148 268-461 1-151 (169)
158 PRK00093 GTP-binding protein D 99.7 5E-16 1.1E-20 167.4 17.2 143 267-461 2-152 (435)
159 cd04139 RalA_RalB RalA/RalB su 99.7 5.8E-16 1.3E-20 142.4 14.9 149 267-461 1-152 (164)
160 cd04101 RabL4 RabL4 (Rab-like4 99.7 8.8E-16 1.9E-20 142.0 15.8 151 267-461 1-154 (164)
161 cd01893 Miro1 Miro1 subfamily. 99.7 7.3E-16 1.6E-20 143.9 15.0 152 267-461 1-154 (166)
162 cd04115 Rab33B_Rab33A Rab33B/R 99.7 5.7E-16 1.2E-20 145.1 14.1 150 266-461 2-159 (170)
163 cd04135 Tc10 TC10 subfamily. 99.7 5.9E-16 1.3E-20 144.8 14.1 153 267-461 1-164 (174)
164 PTZ00133 ADP-ribosylation fact 99.7 5.9E-16 1.3E-20 147.6 14.4 152 264-461 15-168 (182)
165 smart00178 SAR Sar1p-like memb 99.7 4.8E-16 1E-20 148.3 13.7 155 264-461 15-175 (184)
166 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 5.6E-16 1.2E-20 146.3 14.0 149 266-461 2-154 (172)
167 PRK00454 engB GTP-binding prot 99.7 9.2E-16 2E-20 146.4 15.6 149 265-461 23-184 (196)
168 cd04177 RSR1 RSR1 subgroup. R 99.7 5.3E-16 1.2E-20 144.9 13.7 153 267-461 2-154 (168)
169 PLN03071 GTP-binding nuclear p 99.7 1E-15 2.2E-20 150.6 16.2 150 264-461 11-162 (219)
170 cd00879 Sar1 Sar1 subfamily. 99.7 3.8E-16 8.2E-21 148.7 12.8 151 264-461 17-181 (190)
171 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.3E-15 2.8E-20 145.5 16.4 153 267-461 1-156 (182)
172 PLN03110 Rab GTPase; Provision 99.7 1.3E-15 2.8E-20 149.3 16.8 152 264-461 10-164 (216)
173 cd01874 Cdc42 Cdc42 subfamily. 99.7 1E-15 2.2E-20 145.1 15.4 153 267-461 2-165 (175)
174 cd04144 Ras2 Ras2 subfamily. 99.7 5.3E-16 1.1E-20 148.5 13.6 147 268-461 1-153 (190)
175 PRK09518 bifunctional cytidyla 99.7 4.9E-16 1.1E-20 177.3 15.6 153 266-463 450-613 (712)
176 cd04142 RRP22 RRP22 subfamily. 99.7 4.9E-16 1.1E-20 150.6 13.3 150 267-461 1-164 (198)
177 smart00174 RHO Rho (Ras homolo 99.7 1.1E-15 2.4E-20 142.9 14.7 151 269-461 1-162 (174)
178 cd04147 Ras_dva Ras-dva subfam 99.7 4.6E-16 1E-20 150.0 12.5 152 268-461 1-153 (198)
179 PRK09554 feoB ferrous iron tra 99.7 6.8E-16 1.5E-20 176.4 15.9 145 265-461 2-158 (772)
180 cd04123 Rab21 Rab21 subfamily. 99.7 1.8E-15 3.8E-20 138.7 15.4 149 267-461 1-152 (162)
181 PRK09518 bifunctional cytidyla 99.7 1.1E-15 2.3E-20 174.5 17.1 145 265-461 274-426 (712)
182 cd04132 Rho4_like Rho4-like su 99.7 9.7E-16 2.1E-20 145.5 14.0 154 267-461 1-157 (187)
183 cd04155 Arl3 Arl3 subfamily. 99.7 9.2E-16 2E-20 143.3 13.6 151 264-461 12-165 (173)
184 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 1.8E-15 3.8E-20 143.2 15.3 166 263-487 19-186 (221)
185 cd04159 Arl10_like Arl10-like 99.7 1.4E-15 2.9E-20 138.1 14.2 146 269-461 2-151 (159)
186 cd04114 Rab30 Rab30 subfamily. 99.7 1.1E-15 2.4E-20 142.0 13.9 150 264-461 5-159 (169)
187 cd04126 Rab20 Rab20 subfamily. 99.7 9.6E-16 2.1E-20 151.1 14.1 154 267-461 1-180 (220)
188 cd04111 Rab39 Rab39 subfamily. 99.7 1.1E-15 2.4E-20 149.4 14.3 152 266-461 2-156 (211)
189 PRK12299 obgE GTPase CgtA; Rev 99.7 1.1E-15 2.4E-20 159.6 14.9 154 264-461 156-318 (335)
190 cd04125 RabA_like RabA-like su 99.7 2.6E-15 5.7E-20 143.1 16.2 150 267-461 1-152 (188)
191 cd01875 RhoG RhoG subfamily. 99.7 3E-15 6.4E-20 143.8 16.4 155 265-461 2-167 (191)
192 cd04143 Rhes_like Rhes_like su 99.7 2.5E-15 5.5E-20 150.7 16.6 153 267-461 1-161 (247)
193 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 7.6E-16 1.6E-20 144.2 12.0 146 269-461 2-156 (164)
194 TIGR02528 EutP ethanolamine ut 99.7 4.5E-16 9.8E-21 141.1 10.1 130 268-461 2-135 (142)
195 cd01878 HflX HflX subfamily. 99.7 1.5E-15 3.3E-20 146.5 14.3 144 265-461 40-195 (204)
196 TIGR02729 Obg_CgtA Obg family 99.7 1.4E-15 3E-20 158.5 14.8 156 264-461 155-319 (329)
197 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.5E-15 3.4E-20 142.6 13.4 154 267-461 1-164 (173)
198 cd04117 Rab15 Rab15 subfamily. 99.6 4.2E-15 9.1E-20 138.3 15.8 149 267-461 1-152 (161)
199 cd04137 RheB Rheb (Ras Homolog 99.6 1.3E-15 2.8E-20 143.5 12.6 149 267-461 2-153 (180)
200 cd01871 Rac1_like Rac1-like su 99.6 2.1E-15 4.6E-20 142.7 13.8 153 267-461 2-165 (174)
201 PRK12298 obgE GTPase CgtA; Rev 99.6 1.8E-15 3.9E-20 161.0 14.7 182 266-506 159-360 (390)
202 COG0486 ThdF Predicted GTPase 99.6 9.6E-16 2.1E-20 162.3 12.5 144 264-461 215-366 (454)
203 PRK15467 ethanolamine utilizat 99.6 8.5E-16 1.8E-20 143.5 10.8 131 268-461 3-137 (158)
204 KOG0467 Translation elongation 99.6 1.4E-15 2.9E-20 166.7 13.9 174 263-460 6-206 (887)
205 PLN03108 Rab family protein; P 99.6 4.3E-15 9.4E-20 145.0 15.9 150 266-461 6-158 (210)
206 cd00876 Ras Ras family. The R 99.6 2.9E-15 6.3E-20 137.0 13.8 149 268-461 1-151 (160)
207 cd04134 Rho3 Rho3 subfamily. 99.6 4E-15 8.7E-20 142.5 15.2 154 267-461 1-164 (189)
208 cd04133 Rop_like Rop subfamily 99.6 2.5E-15 5.5E-20 143.0 13.7 154 267-461 2-163 (176)
209 cd01892 Miro2 Miro2 subfamily. 99.6 3.3E-15 7.3E-20 140.5 14.3 154 264-461 2-156 (169)
210 PRK12296 obgE GTPase CgtA; Rev 99.6 3E-15 6.4E-20 162.7 15.8 156 264-461 157-330 (500)
211 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.7E-15 3.6E-20 142.2 12.0 147 268-461 1-159 (167)
212 TIGR03156 GTP_HflX GTP-binding 99.6 2.6E-15 5.6E-20 157.9 14.4 142 266-461 189-342 (351)
213 cd01870 RhoA_like RhoA-like su 99.6 5.5E-15 1.2E-19 138.3 14.8 153 267-461 2-165 (175)
214 PF00025 Arf: ADP-ribosylation 99.6 4.7E-15 1E-19 140.8 14.4 151 264-461 12-166 (175)
215 PRK05291 trmE tRNA modificatio 99.6 1.9E-15 4E-20 163.9 12.9 139 265-461 214-360 (449)
216 cd04146 RERG_RasL11_like RERG/ 99.6 2.2E-15 4.9E-20 140.0 11.5 147 268-461 1-154 (165)
217 COG0218 Predicted GTPase [Gene 99.6 9E-15 1.9E-19 140.2 15.7 151 265-461 23-187 (200)
218 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 7.4E-15 1.6E-19 140.5 15.2 157 264-461 3-170 (182)
219 cd00880 Era_like Era (E. coli 99.6 6.1E-15 1.3E-19 132.5 13.6 146 271-461 1-154 (163)
220 PRK12297 obgE GTPase CgtA; Rev 99.6 5.9E-15 1.3E-19 158.2 15.0 148 265-461 157-317 (424)
221 cd01881 Obg_like The Obg-like 99.6 3.9E-15 8.5E-20 138.7 12.0 150 271-461 1-167 (176)
222 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 8.7E-15 1.9E-19 145.5 15.1 157 264-461 11-178 (232)
223 KOG0084 GTPase Rab1/YPT1, smal 99.6 5.9E-15 1.3E-19 140.0 12.9 153 264-461 7-162 (205)
224 KOG0078 GTP-binding protein SE 99.6 6.7E-15 1.5E-19 141.2 13.2 155 264-461 10-164 (207)
225 cd04131 Rnd Rnd subfamily. Th 99.6 7.4E-15 1.6E-19 139.9 13.4 154 267-461 2-166 (178)
226 KOG0394 Ras-related GTPase [Ge 99.6 4.3E-15 9.3E-20 139.3 11.3 158 263-461 6-168 (210)
227 TIGR00450 mnmE_trmE_thdF tRNA 99.6 8.8E-15 1.9E-19 158.2 15.4 142 264-461 201-350 (442)
228 cd04148 RGK RGK subfamily. Th 99.6 1.6E-14 3.4E-19 142.3 14.9 148 267-461 1-153 (221)
229 cd01876 YihA_EngB The YihA (En 99.6 3.3E-14 7.1E-19 130.2 15.3 147 269-461 2-161 (170)
230 COG0370 FeoB Fe2+ transport sy 99.6 1.1E-14 2.4E-19 160.0 14.3 145 265-461 2-154 (653)
231 KOG0468 U5 snRNP-specific prot 99.6 4.3E-14 9.4E-19 152.8 18.1 133 263-418 125-262 (971)
232 PF00071 Ras: Ras family; Int 99.6 4.1E-14 8.9E-19 130.6 15.3 149 268-461 1-151 (162)
233 smart00176 RAN Ran (Ras-relate 99.6 1.7E-14 3.8E-19 140.2 13.3 142 272-461 1-144 (200)
234 PF10662 PduV-EutP: Ethanolami 99.6 7.7E-15 1.7E-19 134.6 9.8 131 267-461 2-136 (143)
235 PRK11058 GTPase HflX; Provisio 99.6 2.2E-14 4.7E-19 154.4 14.5 143 267-461 198-352 (426)
236 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 3.5E-14 7.7E-19 140.2 14.7 153 267-461 2-166 (222)
237 KOG1423 Ras-like GTPase ERA [C 99.6 1.5E-13 3.3E-18 138.1 17.4 120 261-419 67-199 (379)
238 COG2229 Predicted GTPase [Gene 99.6 8.3E-14 1.8E-18 131.1 14.6 160 263-461 7-168 (187)
239 KOG0098 GTPase Rab2, small G p 99.5 3.1E-14 6.7E-19 133.8 11.3 151 266-462 6-159 (216)
240 PTZ00132 GTP-binding nuclear p 99.5 2.1E-13 4.5E-18 133.1 16.7 153 262-461 5-158 (215)
241 cd04103 Centaurin_gamma Centau 99.5 5.1E-14 1.1E-18 131.4 11.7 145 267-461 1-149 (158)
242 TIGR00437 feoB ferrous iron tr 99.5 4.3E-14 9.3E-19 157.9 13.0 138 273-462 1-146 (591)
243 cd01882 BMS1 Bms1. Bms1 is an 99.5 3.2E-13 6.9E-18 133.6 17.8 177 262-496 35-213 (225)
244 KOG0095 GTPase Rab30, small G 99.5 5E-14 1.1E-18 127.8 10.7 153 266-461 7-159 (213)
245 cd04129 Rho2 Rho2 subfamily. 99.5 9.2E-14 2E-18 132.7 13.1 153 267-461 2-163 (187)
246 PRK09866 hypothetical protein; 99.5 1.2E-13 2.6E-18 151.5 14.7 109 343-461 229-343 (741)
247 cd00882 Ras_like_GTPase Ras-li 99.5 1.4E-13 3E-18 121.8 12.5 147 271-461 1-150 (157)
248 KOG0080 GTPase Rab18, small G 99.5 5.1E-14 1.1E-18 129.3 9.8 156 264-461 9-164 (209)
249 cd04104 p47_IIGP_like p47 (47- 99.5 1.9E-13 4.2E-18 132.1 14.4 154 266-460 1-173 (197)
250 KOG0073 GTP-binding ADP-ribosy 99.5 1.5E-13 3.2E-18 126.8 12.4 153 264-461 14-168 (185)
251 cd01873 RhoBTB RhoBTB subfamil 99.5 2.1E-13 4.6E-18 131.9 13.6 108 340-461 62-186 (195)
252 PF01926 MMR_HSR1: 50S ribosom 99.5 1.6E-13 3.5E-18 120.8 11.1 107 268-414 1-116 (116)
253 cd01896 DRG The developmentall 99.5 2.9E-13 6.2E-18 134.7 13.8 82 268-380 2-90 (233)
254 cd04102 RabL3 RabL3 (Rab-like3 99.5 1.2E-12 2.7E-17 127.4 16.0 157 267-461 1-180 (202)
255 KOG1489 Predicted GTP-binding 99.5 2.9E-13 6.2E-18 136.8 10.6 158 263-461 193-357 (366)
256 KOG0087 GTPase Rab11/YPT3, sma 99.4 2.2E-13 4.7E-18 130.6 9.0 153 264-462 12-167 (222)
257 COG2262 HflX GTPases [General 99.4 5.9E-13 1.3E-17 139.1 12.2 147 263-461 189-346 (411)
258 cd04105 SR_beta Signal recogni 99.4 9.5E-13 2.1E-17 128.1 12.9 115 268-420 2-124 (203)
259 KOG0093 GTPase Rab3, small G p 99.4 5.1E-13 1.1E-17 121.1 9.2 153 266-461 21-173 (193)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1.4E-12 2.9E-17 125.9 12.9 162 267-486 1-184 (196)
261 KOG1532 GTPase XAB1, interacts 99.4 2.9E-13 6.2E-18 134.3 7.0 196 262-461 15-254 (366)
262 KOG1191 Mitochondrial GTPase [ 99.4 4.9E-13 1.1E-17 141.7 7.9 154 264-461 266-440 (531)
263 COG1163 DRG Predicted GTPase [ 99.4 2.1E-12 4.6E-17 131.1 12.1 84 266-380 63-153 (365)
264 COG1084 Predicted GTPase [Gene 99.4 3.5E-12 7.6E-17 129.9 13.0 151 265-461 167-326 (346)
265 PLN00023 GTP-binding protein; 99.4 6.5E-12 1.4E-16 129.7 14.6 144 262-442 17-190 (334)
266 cd01850 CDC_Septin CDC/Septin. 99.4 1.2E-11 2.7E-16 126.0 16.0 150 266-452 4-183 (276)
267 KOG0086 GTPase Rab4, small G p 99.4 5.9E-12 1.3E-16 114.9 11.7 151 266-461 9-161 (214)
268 COG1100 GTPase SAR1 and relate 99.3 1.5E-11 3.2E-16 119.5 14.8 156 265-461 4-175 (219)
269 KOG0079 GTP-binding protein H- 99.3 4.2E-12 9.1E-17 115.3 9.1 152 266-461 8-159 (198)
270 KOG0075 GTP-binding ADP-ribosy 99.3 1.1E-11 2.3E-16 112.7 11.3 152 264-461 18-172 (186)
271 PF08477 Miro: Miro-like prote 99.3 3.9E-12 8.5E-17 111.7 8.1 114 268-416 1-119 (119)
272 KOG0070 GTP-binding ADP-ribosy 99.3 1.3E-11 2.7E-16 116.5 11.7 153 263-461 14-168 (181)
273 COG0536 Obg Predicted GTPase [ 99.3 1.2E-11 2.6E-16 126.6 11.8 158 266-461 159-323 (369)
274 COG3596 Predicted GTPase [Gene 99.3 9.9E-12 2.1E-16 124.1 10.9 154 263-461 36-212 (296)
275 KOG0097 GTPase Rab14, small G 99.3 2.4E-11 5.3E-16 109.5 12.2 152 265-461 10-163 (215)
276 PF09439 SRPRB: Signal recogni 99.3 1.7E-11 3.7E-16 117.1 10.3 114 266-420 3-127 (181)
277 KOG0088 GTPase Rab21, small G 99.3 1.5E-11 3.3E-16 112.9 8.8 154 264-461 11-165 (218)
278 KOG0395 Ras-related GTPase [Ge 99.3 7.1E-11 1.5E-15 114.6 13.3 153 265-461 2-155 (196)
279 PTZ00099 rab6; Provisional 99.2 9.4E-11 2E-15 111.7 13.4 108 338-461 23-132 (176)
280 KOG0076 GTP-binding ADP-ribosy 99.2 2.4E-11 5.1E-16 113.4 8.8 164 263-461 14-177 (197)
281 PRK09435 membrane ATPase/prote 99.2 2.4E-11 5.2E-16 126.6 8.8 103 341-461 146-250 (332)
282 KOG0091 GTPase Rab39, small G 99.2 7.7E-11 1.7E-15 108.9 9.9 151 265-461 7-163 (213)
283 KOG0081 GTPase Rab27, small G 99.2 3E-11 6.4E-16 111.0 6.1 102 344-461 67-171 (219)
284 PRK13768 GTPase; Provisional 99.2 1.2E-10 2.6E-15 117.3 10.6 115 343-486 96-247 (253)
285 KOG0074 GTP-binding ADP-ribosy 99.2 1.5E-10 3.3E-15 104.6 9.8 152 263-461 14-169 (185)
286 cd01899 Ygr210 Ygr210 subfamil 99.2 4.7E-10 1E-14 116.5 14.8 88 269-379 1-111 (318)
287 cd01853 Toc34_like Toc34-like 99.2 9.6E-10 2.1E-14 110.5 16.5 121 262-419 27-163 (249)
288 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 6.8E-10 1.5E-14 110.3 15.0 151 268-455 1-161 (232)
289 PF03029 ATP_bind_1: Conserved 99.1 5.5E-11 1.2E-15 118.7 6.1 117 345-483 92-234 (238)
290 PF05049 IIGP: Interferon-indu 99.1 2.7E-10 5.8E-15 119.9 11.2 170 264-486 33-219 (376)
291 KOG0090 Signal recognition par 99.1 6E-10 1.3E-14 107.4 12.2 118 264-420 36-160 (238)
292 COG5192 BMS1 GTP-binding prote 99.1 1.4E-09 3E-14 116.4 15.8 147 262-456 65-211 (1077)
293 KOG0083 GTPase Rab26/Rab37, sm 99.1 9.1E-11 2E-15 105.0 5.4 149 271-461 2-150 (192)
294 KOG0072 GTP-binding ADP-ribosy 99.1 2.1E-10 4.5E-15 104.1 6.8 151 265-461 17-169 (182)
295 KOG0071 GTP-binding ADP-ribosy 99.1 2.1E-09 4.4E-14 97.2 12.7 150 265-461 16-168 (180)
296 PRK09602 translation-associate 99.0 2.5E-09 5.5E-14 114.3 14.6 89 267-378 2-113 (396)
297 PF04548 AIG1: AIG1 family; I 99.0 2.2E-09 4.8E-14 105.2 12.3 143 267-454 1-163 (212)
298 PF00350 Dynamin_N: Dynamin fa 99.0 3.4E-10 7.3E-15 105.5 6.2 66 342-415 99-168 (168)
299 TIGR00991 3a0901s02IAP34 GTP-b 99.0 3.1E-09 6.7E-14 109.3 13.5 122 261-419 33-167 (313)
300 KOG0393 Ras-related small GTPa 99.0 8.9E-09 1.9E-13 99.4 13.3 155 265-461 3-169 (198)
301 TIGR00073 hypB hydrogenase acc 99.0 1.4E-09 3E-14 106.1 7.9 96 343-461 102-197 (207)
302 PTZ00258 GTP-binding protein; 98.9 1E-08 2.2E-13 109.0 13.7 92 264-378 19-126 (390)
303 COG4917 EutP Ethanolamine util 98.9 3.2E-09 7E-14 94.4 7.7 131 267-461 2-136 (148)
304 TIGR00750 lao LAO/AO transport 98.9 3.9E-09 8.4E-14 108.9 9.5 100 341-461 124-228 (300)
305 TIGR00101 ureG urease accessor 98.9 6.7E-09 1.5E-13 101.0 9.9 96 343-461 91-186 (199)
306 PRK09601 GTP-binding protein Y 98.9 1.8E-08 3.8E-13 106.1 13.0 89 267-378 3-107 (364)
307 PF00735 Septin: Septin; Inte 98.9 2.5E-08 5.4E-13 102.1 13.4 144 266-441 4-176 (281)
308 smart00053 DYNc Dynamin, GTPas 98.9 1.1E-08 2.4E-13 102.2 10.5 71 342-421 123-208 (240)
309 COG1703 ArgK Putative periplas 98.9 7.8E-09 1.7E-13 104.7 9.2 175 259-461 44-244 (323)
310 PF03308 ArgK: ArgK protein; 98.9 6.1E-09 1.3E-13 104.1 8.0 169 264-461 27-220 (266)
311 TIGR02836 spore_IV_A stage IV 98.8 7.8E-08 1.7E-12 101.7 15.6 136 265-418 16-193 (492)
312 KOG0410 Predicted GTP binding 98.8 5.5E-09 1.2E-13 106.3 6.5 141 265-461 177-331 (410)
313 KOG4252 GTP-binding protein [S 98.8 1.5E-09 3.3E-14 101.7 2.3 154 263-461 17-171 (246)
314 COG0378 HypB Ni2+-binding GTPa 98.8 4.6E-09 1E-13 100.5 5.1 94 344-461 97-191 (202)
315 KOG1707 Predicted Ras related/ 98.8 1.7E-08 3.6E-13 109.4 8.3 156 262-461 5-165 (625)
316 KOG2486 Predicted GTPase [Gene 98.7 1.8E-08 3.9E-13 100.9 7.0 158 263-462 133-307 (320)
317 KOG1490 GTP-binding protein CR 98.7 2.7E-08 5.9E-13 106.1 8.3 158 264-462 166-332 (620)
318 KOG3886 GTP-binding protein [S 98.7 2.5E-08 5.4E-13 97.4 6.2 151 266-455 4-163 (295)
319 KOG0077 Vesicle coat complex C 98.7 1E-07 2.2E-12 88.8 9.6 156 264-461 18-183 (193)
320 KOG1673 Ras GTPases [General f 98.7 2.1E-07 4.6E-12 85.6 11.6 155 264-461 18-176 (205)
321 PRK10463 hydrogenase nickel in 98.7 7.8E-08 1.7E-12 98.3 9.4 97 342-461 183-279 (290)
322 KOG1547 Septin CDC10 and relat 98.7 2.8E-07 6E-12 90.6 12.6 142 266-441 46-218 (336)
323 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 1.4E-07 2.9E-12 89.6 9.6 151 264-461 8-159 (216)
324 TIGR00993 3a0901s04IAP86 chlor 98.6 2.6E-07 5.5E-12 102.7 13.0 118 265-419 117-250 (763)
325 COG0012 Predicted GTPase, prob 98.6 3.2E-07 7E-12 95.8 11.6 91 266-379 2-109 (372)
326 KOG0448 Mitofusin 1 GTPase, in 98.6 3.2E-07 6.8E-12 101.2 10.9 181 264-455 107-310 (749)
327 KOG1486 GTP-binding protein DR 98.6 1.1E-06 2.3E-11 87.1 13.3 84 266-380 62-152 (364)
328 COG5019 CDC3 Septin family pro 98.5 1.2E-06 2.6E-11 91.1 14.3 145 264-441 21-196 (373)
329 cd01900 YchF YchF subfamily. 98.5 1.6E-07 3.4E-12 95.8 5.7 86 269-378 1-103 (274)
330 KOG3883 Ras family small GTPas 98.4 3.5E-06 7.6E-11 77.6 12.7 155 263-461 6-165 (198)
331 PRK10416 signal recognition pa 98.3 3.8E-06 8.2E-11 87.6 11.9 95 342-462 195-301 (318)
332 KOG2655 Septin family protein 98.3 5.5E-06 1.2E-10 86.7 12.8 144 265-441 20-192 (366)
333 PRK14974 cell division protein 98.3 2.3E-06 4.9E-11 89.7 9.8 94 342-461 221-320 (336)
334 cd01858 NGP_1 NGP-1. Autoanti 98.3 1.1E-06 2.3E-11 81.8 6.3 57 265-354 101-157 (157)
335 cd01859 MJ1464 MJ1464. This f 98.3 2.3E-06 5E-11 79.2 8.1 79 363-461 8-86 (156)
336 KOG1954 Endocytosis/signaling 98.3 2.4E-06 5.1E-11 88.6 8.6 168 264-455 56-258 (532)
337 PF05783 DLIC: Dynein light in 98.3 1.8E-05 4E-10 86.3 15.8 50 405-460 197-253 (472)
338 KOG3905 Dynein light intermedi 98.3 3.2E-05 6.8E-10 79.3 16.1 48 408-460 225-279 (473)
339 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.3E-06 5E-11 79.5 7.4 82 361-461 2-85 (157)
340 cd04178 Nucleostemin_like Nucl 98.2 1.7E-06 3.6E-11 82.4 5.5 58 264-354 115-172 (172)
341 TIGR00064 ftsY signal recognit 98.2 1E-05 2.2E-10 82.6 11.4 94 342-461 153-258 (272)
342 PF00448 SRP54: SRP54-type pro 98.1 1.9E-05 4.1E-10 76.8 11.3 67 342-419 82-154 (196)
343 KOG4423 GTP-binding protein-li 98.1 1E-07 2.2E-12 90.2 -4.3 153 266-462 25-185 (229)
344 cd01851 GBP Guanylate-binding 98.1 3.2E-05 7E-10 76.6 12.9 89 264-379 5-103 (224)
345 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.1E-05 2.5E-10 73.6 8.2 80 359-458 3-84 (141)
346 TIGR00157 ribosome small subun 98.1 1.4E-05 3.1E-10 80.2 9.4 92 355-463 24-115 (245)
347 cd03693 EF1_alpha_II EF1_alpha 98.1 8.2E-06 1.8E-10 69.5 6.5 42 492-534 2-44 (91)
348 cd01855 YqeH YqeH. YqeH is an 98.0 1.2E-05 2.7E-10 76.9 7.8 91 357-461 24-115 (190)
349 cd01849 YlqF_related_GTPase Yl 98.0 2.1E-05 4.6E-10 73.0 8.1 74 369-461 1-75 (155)
350 TIGR01425 SRP54_euk signal rec 98.0 2.6E-05 5.6E-10 84.1 9.9 65 342-418 181-252 (429)
351 KOG1487 GTP-binding protein DR 98.0 1.8E-05 4E-10 78.8 7.9 84 266-380 59-149 (358)
352 PF00641 zf-RanBP: Zn-finger i 98.0 2.5E-06 5.3E-11 57.7 1.1 29 48-76 2-30 (30)
353 cd01849 YlqF_related_GTPase Yl 98.0 8.4E-06 1.8E-10 75.7 5.1 57 265-354 99-155 (155)
354 cd01855 YqeH YqeH. YqeH is an 98.0 8.3E-06 1.8E-10 78.1 4.8 64 266-354 127-190 (190)
355 COG1161 Predicted GTPases [Gen 97.9 1.1E-05 2.3E-10 84.4 5.5 57 264-353 130-186 (322)
356 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.1E-05 2.4E-10 73.7 5.0 22 268-289 85-106 (141)
357 cd03698 eRF3_II_like eRF3_II_l 97.9 2.7E-05 5.9E-10 65.0 6.8 40 494-534 1-40 (83)
358 cd01856 YlqF YlqF. Proteins o 97.9 2.5E-05 5.5E-10 73.7 7.2 89 351-461 2-91 (171)
359 PRK12288 GTPase RsgA; Reviewed 97.9 1.4E-05 3.1E-10 84.3 5.8 65 268-358 207-271 (347)
360 cd03112 CobW_like The function 97.9 8.2E-06 1.8E-10 76.4 3.5 22 268-289 2-23 (158)
361 PRK09563 rbgA GTPase YlqF; Rev 97.9 1.8E-05 3.9E-10 81.3 6.3 57 265-354 120-176 (287)
362 PF03193 DUF258: Protein of un 97.9 7.3E-06 1.6E-10 77.2 2.6 24 267-290 36-59 (161)
363 TIGR03596 GTPase_YlqF ribosome 97.9 1.8E-05 4E-10 80.8 5.7 57 265-354 117-173 (276)
364 TIGR03596 GTPase_YlqF ribosome 97.9 3.4E-05 7.5E-10 78.7 7.5 89 351-461 4-93 (276)
365 PRK11889 flhF flagellar biosyn 97.9 2.8E-05 6.1E-10 82.7 7.0 66 343-419 320-391 (436)
366 KOG1491 Predicted GTP-binding 97.8 0.00011 2.4E-09 75.8 10.8 93 263-379 17-126 (391)
367 cd01856 YlqF YlqF. Proteins o 97.8 2.5E-05 5.4E-10 73.8 5.7 57 265-354 114-170 (171)
368 cd04089 eRF3_II eRF3_II: domai 97.8 4.6E-05 1E-09 63.5 6.7 39 494-534 1-39 (82)
369 PRK12289 GTPase RsgA; Reviewed 97.8 7.1E-05 1.5E-09 79.1 9.6 81 364-462 86-166 (352)
370 PRK00098 GTPase RsgA; Reviewed 97.8 7.5E-05 1.6E-09 77.2 9.6 81 365-462 78-158 (298)
371 cd03115 SRP The signal recogni 97.8 0.00017 3.6E-09 68.0 10.9 68 342-420 81-154 (173)
372 PF02492 cobW: CobW/HypB/UreG, 97.8 2.5E-05 5.5E-10 74.4 5.4 82 343-435 84-170 (178)
373 cd03110 Fer4_NifH_child This p 97.8 0.00025 5.4E-09 67.1 12.1 82 342-441 91-172 (179)
374 TIGR03597 GTPase_YqeH ribosome 97.8 6.4E-05 1.4E-09 79.7 8.4 96 354-463 50-145 (360)
375 PRK00771 signal recognition pa 97.8 0.00016 3.5E-09 78.5 11.0 63 344-418 176-245 (437)
376 TIGR00157 ribosome small subun 97.7 3.1E-05 6.7E-10 77.8 5.0 23 268-290 122-144 (245)
377 KOG1534 Putative transcription 97.7 6.5E-05 1.4E-09 73.0 6.6 73 343-419 97-178 (273)
378 PRK12289 GTPase RsgA; Reviewed 97.7 3.4E-05 7.3E-10 81.6 5.1 24 268-291 174-197 (352)
379 PRK09563 rbgA GTPase YlqF; Rev 97.7 7.3E-05 1.6E-09 76.8 6.9 90 350-461 6-96 (287)
380 COG1162 Predicted GTPases [Gen 97.7 4.5E-05 9.7E-10 78.2 5.0 65 268-358 166-230 (301)
381 PRK14722 flhF flagellar biosyn 97.7 0.00013 2.9E-09 77.4 8.8 25 265-289 136-160 (374)
382 TIGR00092 GTP-binding protein 97.7 8.1E-05 1.8E-09 78.8 6.7 90 267-379 3-109 (368)
383 cd03114 ArgK-like The function 97.6 0.00024 5.1E-09 66.0 9.0 35 342-379 90-124 (148)
384 cd03694 GTPBP_II Domain II of 97.6 9.8E-05 2.1E-09 62.3 5.6 38 495-533 1-39 (87)
385 cd03696 selB_II selB_II: this 97.6 0.00011 2.5E-09 61.2 5.9 39 495-534 1-40 (83)
386 COG1419 FlhF Flagellar GTP-bin 97.6 0.00012 2.5E-09 77.9 7.4 132 265-419 202-352 (407)
387 PRK06731 flhF flagellar biosyn 97.6 0.00048 1E-08 70.3 11.6 66 343-419 154-225 (270)
388 PRK12727 flagellar biosynthesi 97.6 0.00033 7.1E-09 77.2 11.0 24 265-288 349-372 (559)
389 TIGR03597 GTPase_YqeH ribosome 97.6 9.5E-05 2.1E-09 78.4 6.6 116 267-419 155-280 (360)
390 PF09547 Spore_IV_A: Stage IV 97.6 0.002 4.4E-08 68.8 15.8 145 266-417 17-192 (492)
391 PRK10867 signal recognition pa 97.6 0.00061 1.3E-08 73.9 12.2 25 264-288 98-122 (433)
392 KOG1533 Predicted GTPase [Gene 97.6 0.00032 6.9E-09 69.3 9.0 73 343-419 96-177 (290)
393 PRK13796 GTPase YqeH; Provisio 97.6 7.9E-05 1.7E-09 79.2 5.3 60 267-354 161-220 (365)
394 cd01859 MJ1464 MJ1464. This f 97.6 0.00011 2.3E-09 68.0 5.5 23 266-288 101-123 (156)
395 smart00547 ZnF_RBZ Zinc finger 97.6 2.8E-05 6.1E-10 50.6 1.0 25 49-73 1-25 (26)
396 COG0523 Putative GTPases (G3E 97.5 0.00042 9.1E-09 72.4 9.9 83 342-435 83-173 (323)
397 cd03695 CysN_NodQ_II CysN_NodQ 97.5 0.00019 4.1E-09 59.8 5.9 39 495-534 1-40 (81)
398 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00037 8E-09 71.7 9.3 81 364-462 75-155 (287)
399 COG3640 CooC CO dehydrogenase 97.5 0.00023 4.9E-09 70.5 7.2 65 343-418 133-198 (255)
400 PRK01889 GTPase RsgA; Reviewed 97.5 0.00046 1E-08 73.2 10.1 78 365-461 110-187 (356)
401 TIGR00959 ffh signal recogniti 97.5 0.00046 1E-08 74.8 9.9 65 342-418 181-252 (428)
402 PRK14721 flhF flagellar biosyn 97.5 0.00019 4.1E-09 77.4 6.5 67 342-419 268-340 (420)
403 PRK14723 flhF flagellar biosyn 97.5 0.00079 1.7E-08 77.2 11.8 24 266-289 185-208 (767)
404 PRK12288 GTPase RsgA; Reviewed 97.5 0.00063 1.4E-08 71.9 10.2 81 365-461 118-198 (347)
405 PRK12723 flagellar biosynthesi 97.4 0.00038 8.2E-09 74.5 8.4 67 342-419 253-326 (388)
406 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00018 3.8E-09 74.0 5.7 24 267-290 162-185 (287)
407 PRK12726 flagellar biosynthesi 97.4 0.00011 2.3E-09 78.1 4.1 67 342-419 284-356 (407)
408 PRK12724 flagellar biosynthesi 97.4 0.00018 3.8E-09 77.4 5.7 67 342-419 298-373 (432)
409 PRK06995 flhF flagellar biosyn 97.4 0.00076 1.7E-08 74.0 10.6 110 342-484 333-449 (484)
410 KOG0447 Dynamin-like GTP bindi 97.4 0.00043 9.3E-09 75.1 8.4 149 265-420 307-494 (980)
411 PRK13796 GTPase YqeH; Provisio 97.4 0.0006 1.3E-08 72.5 9.6 89 360-462 61-150 (365)
412 PRK05703 flhF flagellar biosyn 97.4 0.00095 2.1E-08 72.4 10.5 67 342-419 298-371 (424)
413 cd03697 EFTU_II EFTU_II: Elong 97.3 0.00022 4.8E-09 60.1 4.2 37 495-532 1-38 (87)
414 cd02036 MinD Bacterial cell di 97.3 0.0018 3.9E-08 60.6 10.6 64 345-418 64-127 (179)
415 PRK11537 putative GTP-binding 97.3 0.0012 2.6E-08 69.0 9.7 24 266-289 4-27 (318)
416 cd02038 FleN-like FleN is a me 97.3 0.0045 9.7E-08 56.5 12.2 65 344-418 45-110 (139)
417 cd00066 G-alpha G protein alph 97.3 0.0018 3.8E-08 67.6 10.6 128 332-460 149-300 (317)
418 KOG2485 Conserved ATP/GTP bind 97.3 0.0003 6.6E-09 72.1 4.7 65 264-353 141-205 (335)
419 TIGR02475 CobW cobalamin biosy 97.2 0.0021 4.6E-08 67.8 11.2 23 267-289 5-27 (341)
420 KOG3887 Predicted small GTPase 97.2 0.001 2.2E-08 66.0 8.0 152 267-455 28-187 (347)
421 COG0552 FtsY Signal recognitio 97.2 0.0007 1.5E-08 70.2 7.2 28 263-290 136-163 (340)
422 PRK00098 GTPase RsgA; Reviewed 97.2 0.00036 7.7E-09 72.2 5.0 24 267-290 165-188 (298)
423 smart00275 G_alpha G protein a 97.2 0.0036 7.8E-08 66.0 12.0 130 331-461 171-324 (342)
424 KOG2743 Cobalamin synthesis pr 97.1 0.0036 7.9E-08 64.0 10.5 87 342-434 144-238 (391)
425 KOG0780 Signal recognition par 97.1 0.0017 3.7E-08 68.3 8.0 102 263-380 98-226 (483)
426 cd03111 CpaE_like This protein 97.0 0.0031 6.7E-08 55.0 8.4 60 345-414 44-106 (106)
427 COG0541 Ffh Signal recognition 97.0 0.0016 3.4E-08 69.7 7.6 144 263-418 97-252 (451)
428 smart00010 small_GTPase Small 97.0 0.00073 1.6E-08 58.9 4.1 21 267-287 1-21 (124)
429 KOG1424 Predicted GTP-binding 96.9 0.00091 2E-08 72.5 4.0 61 266-359 314-376 (562)
430 KOG4181 Uncharacterized conser 96.8 0.0097 2.1E-07 61.9 10.5 67 362-438 293-375 (491)
431 KOG3859 Septins (P-loop GTPase 96.7 0.0031 6.8E-08 63.8 6.4 140 264-441 40-210 (406)
432 COG1162 Predicted GTPases [Gen 96.7 0.0084 1.8E-07 61.8 9.6 80 366-461 78-157 (301)
433 TIGR03348 VI_IcmF type VI secr 96.6 0.0053 1.1E-07 74.6 8.3 18 269-286 114-131 (1169)
434 KOG2484 GTPase [General functi 96.6 0.0013 2.8E-08 69.4 2.7 60 262-354 248-307 (435)
435 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.013 2.7E-07 48.3 7.6 69 269-380 2-71 (99)
436 KOG0781 Signal recognition par 96.4 0.0017 3.7E-08 69.9 2.5 152 262-419 374-544 (587)
437 KOG1707 Predicted Ras related/ 96.4 0.039 8.5E-07 61.0 12.7 147 261-455 420-568 (625)
438 PRK08099 bifunctional DNA-bind 96.2 0.016 3.6E-07 62.4 8.8 33 261-293 214-246 (399)
439 PRK13695 putative NTPase; Prov 96.2 0.013 2.9E-07 55.2 7.2 23 267-289 1-23 (174)
440 cd04178 Nucleostemin_like Nucl 96.2 0.0071 1.5E-07 57.6 5.3 53 369-432 1-55 (172)
441 cd02042 ParA ParA and ParB of 96.2 0.021 4.7E-07 48.8 7.5 34 344-379 40-73 (104)
442 cd03688 eIF2_gamma_II eIF2_gam 96.0 0.02 4.3E-07 50.5 6.5 41 491-532 2-51 (113)
443 COG1618 Predicted nucleotide k 95.8 0.028 6E-07 53.0 7.1 25 264-288 3-27 (179)
444 PRK01889 GTPase RsgA; Reviewed 95.6 0.0093 2E-07 63.3 3.6 24 267-290 196-219 (356)
445 KOG0082 G-protein alpha subuni 95.5 0.098 2.1E-06 55.3 10.5 128 331-460 182-333 (354)
446 KOG2484 GTPase [General functi 95.4 0.022 4.7E-07 60.4 5.5 78 350-436 128-206 (435)
447 cd01342 Translation_Factor_II_ 95.4 0.041 8.9E-07 43.6 5.8 36 495-531 1-37 (83)
448 PF00503 G-alpha: G-protein al 95.2 0.069 1.5E-06 57.2 8.7 87 331-418 222-316 (389)
449 KOG4477 RING1 interactor RYBP 95.2 0.011 2.3E-07 55.9 2.1 29 47-75 21-49 (228)
450 PF06858 NOG1: Nucleolar GTP-b 95.2 0.082 1.8E-06 41.3 6.6 51 362-416 7-58 (58)
451 cd02032 Bchl_like This family 95.2 0.078 1.7E-06 53.5 8.4 66 343-417 115-184 (267)
452 KOG2423 Nucleolar GTPase [Gene 95.1 0.0064 1.4E-07 64.2 0.4 28 263-290 304-331 (572)
453 COG3523 IcmF Type VI protein s 95.0 0.045 9.9E-07 65.7 7.0 19 269-287 128-146 (1188)
454 PF13207 AAA_17: AAA domain; P 95.0 0.016 3.4E-07 50.8 2.4 24 268-291 1-24 (121)
455 cd03691 BipA_TypA_II BipA_TypA 94.8 0.069 1.5E-06 44.5 5.8 37 495-532 1-38 (86)
456 cd03690 Tet_II Tet_II: This su 94.8 0.065 1.4E-06 44.9 5.7 38 492-530 1-39 (85)
457 cd03692 mtIF2_IVc mtIF2_IVc: t 94.8 0.093 2E-06 43.9 6.5 36 497-533 3-39 (84)
458 PRK13849 putative crown gall t 94.5 0.096 2.1E-06 52.2 6.9 68 342-416 82-151 (231)
459 KOG1424 Predicted GTP-binding 94.5 0.087 1.9E-06 57.6 6.9 81 356-455 163-244 (562)
460 TIGR01281 DPOR_bchL light-inde 94.3 0.11 2.5E-06 52.3 7.0 67 342-417 114-184 (268)
461 PF00005 ABC_tran: ABC transpo 94.2 0.031 6.7E-07 50.1 2.5 22 268-289 13-34 (137)
462 PF13555 AAA_29: P-loop contai 94.2 0.033 7.1E-07 44.2 2.2 21 268-288 25-45 (62)
463 PRK08233 hypothetical protein; 94.1 0.033 7.2E-07 52.2 2.6 26 265-290 2-27 (182)
464 PF13671 AAA_33: AAA domain; P 94.1 0.03 6.6E-07 50.3 2.2 23 269-291 2-24 (143)
465 COG0563 Adk Adenylate kinase a 94.1 0.03 6.6E-07 53.6 2.3 25 267-291 1-25 (178)
466 PF03144 GTP_EFTU_D2: Elongati 94.1 0.052 1.1E-06 43.7 3.3 24 508-532 1-24 (74)
467 KOG0446 Vacuolar sorting prote 94.0 0.018 3.8E-07 65.7 0.6 149 263-420 26-214 (657)
468 CHL00072 chlL photochlorophyll 94.0 0.19 4.2E-06 51.8 8.2 65 343-416 115-183 (290)
469 PRK08118 topology modulation p 93.8 0.038 8.2E-07 52.2 2.3 25 267-291 2-26 (167)
470 COG1161 Predicted GTPases [Gen 93.8 0.16 3.5E-06 53.2 7.2 93 348-461 14-107 (322)
471 PRK07261 topology modulation p 93.7 0.037 8.1E-07 52.4 2.2 21 268-288 2-22 (171)
472 PF13521 AAA_28: AAA domain; P 93.7 0.028 6.1E-07 52.3 1.3 22 268-289 1-22 (163)
473 PRK14738 gmk guanylate kinase; 93.7 0.054 1.2E-06 52.9 3.3 27 262-288 9-35 (206)
474 cd01120 RecA-like_NTPases RecA 93.6 0.24 5.2E-06 44.7 7.3 21 269-289 2-22 (165)
475 cd03238 ABC_UvrA The excision 93.6 0.041 8.8E-07 52.6 2.2 25 264-288 19-43 (176)
476 COG1341 Predicted GTPase or GT 93.6 0.1 2.2E-06 55.7 5.2 28 264-291 71-98 (398)
477 cd02040 NifH NifH gene encodes 93.6 0.21 4.5E-06 50.1 7.3 38 342-379 115-153 (270)
478 PRK14530 adenylate kinase; Pro 93.5 0.045 9.8E-07 53.5 2.3 26 266-291 3-28 (215)
479 PRK05480 uridine/cytidine kina 93.4 0.054 1.2E-06 52.6 2.7 27 264-290 4-30 (209)
480 TIGR00235 udk uridine kinase. 93.4 0.057 1.2E-06 52.5 2.8 27 264-290 4-30 (207)
481 cd02019 NK Nucleoside/nucleoti 93.4 0.049 1.1E-06 43.7 1.9 20 269-288 2-21 (69)
482 cd03699 lepA_II lepA_II: This 93.3 0.21 4.6E-06 41.8 5.8 37 495-532 1-38 (86)
483 COG1136 SalX ABC-type antimicr 93.3 0.045 9.8E-07 54.4 1.9 21 268-288 33-53 (226)
484 smart00382 AAA ATPases associa 93.2 0.057 1.2E-06 46.7 2.4 23 267-289 3-25 (148)
485 PF03205 MobB: Molybdopterin g 93.2 0.054 1.2E-06 49.8 2.3 22 268-289 2-23 (140)
486 KOG0099 G protein subunit Galp 93.2 0.29 6.3E-06 49.6 7.4 105 331-438 189-299 (379)
487 PF13238 AAA_18: AAA domain; P 93.2 0.055 1.2E-06 47.3 2.1 22 269-290 1-22 (129)
488 COG1134 TagH ABC-type polysacc 93.1 0.055 1.2E-06 54.2 2.2 41 249-289 36-76 (249)
489 KOG0066 eIF2-interacting prote 93.0 0.54 1.2E-05 50.8 9.6 27 264-290 611-637 (807)
490 COG3840 ThiQ ABC-type thiamine 93.0 0.059 1.3E-06 52.0 2.2 23 267-289 26-48 (231)
491 PF00437 T2SE: Type II/IV secr 93.0 0.12 2.6E-06 52.2 4.6 24 265-288 126-149 (270)
492 COG1116 TauB ABC-type nitrate/ 92.8 0.057 1.2E-06 54.2 1.9 21 269-289 32-52 (248)
493 PRK10751 molybdopterin-guanine 92.8 0.068 1.5E-06 51.1 2.3 24 265-288 5-28 (173)
494 PRK10078 ribose 1,5-bisphospho 92.8 0.068 1.5E-06 51.1 2.3 23 268-290 4-26 (186)
495 cd01130 VirB11-like_ATPase Typ 92.8 0.066 1.4E-06 51.3 2.2 23 266-288 25-47 (186)
496 TIGR02782 TrbB_P P-type conjug 92.7 0.18 4E-06 52.2 5.6 23 266-288 132-154 (299)
497 cd02037 MRP-like MRP (Multiple 92.7 0.42 9.1E-06 44.7 7.6 67 342-418 66-134 (169)
498 TIGR01360 aden_kin_iso1 adenyl 92.7 0.074 1.6E-06 50.2 2.4 25 267-291 4-28 (188)
499 cd03225 ABC_cobalt_CbiO_domain 92.6 0.071 1.5E-06 51.7 2.2 24 266-289 27-50 (211)
500 cd04092 mtEFG2_II_like mtEFG2_ 92.6 0.24 5.1E-06 41.0 5.1 36 496-532 2-38 (83)
No 1
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-54 Score=456.81 Aligned_cols=272 Identities=53% Similarity=0.909 Sum_probs=263.3
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..+..++++|+||+++|||||+++|++..+.|.++.|+++++++...|+++|.|+|.+|.+.+||++|+|+++...+|+.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
..+.++|+|+|||.+|+.+|+.++.++|++||||||+.+.|+.+|+ ..+|++||..+++.+|+.++||++||||++.|+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHH-HHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEE
Q 009378 422 KDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 422 ~e~~eei~~~L~~~l-~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~ 500 (536)
+++|++|+..|..|| +.+||....+.|||||+++|+|+....+.+.+.+||+|+|||++|+.+.+|.+...+||+|.|+
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIs 411 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTIS 411 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhh
Confidence 999999999999999 8999999999999999999999999988888999999999999999999999889999999999
Q ss_pred EEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009378 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 501 d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
++++.+ .| +.++|+|++|.|++||+|++||++++
T Consensus 412 di~~~~~~~-~~i~gkiesG~iq~gqkl~i~~s~e~ 446 (603)
T KOG0458|consen 412 DIYPLPSSG-VSISGKIESGYIQPGQKLYIMTSRED 446 (603)
T ss_pred heeecCCCe-eEEEEEEeccccccCCEEEEecCcce
Confidence 999999 77 45899999999999999999999764
No 2
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-54 Score=442.46 Aligned_cols=267 Identities=47% Similarity=0.845 Sum_probs=257.9
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.+++++++++||+++|||||+++|+++.+.+..+++.++++++...|+++|.|+|.+|.+.+||++|+|+++++..|+++
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
.+.|+|+|+|||.+|+.+|+.++.+||++||||||..+.|+.+| ...+|++||+.+++.+|+.++||++||||++.|++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~-~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGF-GVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCcccccc-ccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 99999999999999999999999999999999999999999999 57899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEEEE
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~d~ 502 (536)
++|++++.++..+++.+||...+++||||||++|+|+.+..+ .++||+|||||++|+.+.+|.+..++|||++|.++
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~---~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v 239 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSE---NMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDV 239 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCc---CCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeE
Confidence 999999999999999999998899999999999999998763 69999999999999999999999999999999999
Q ss_pred EEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 503 LKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 503 ~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
+.+. .|+| ..|||++|.|++||+|.++|.+.
T Consensus 240 ~~i~~~gtv-~vGrVEsG~i~~g~~v~~~p~~~ 271 (428)
T COG5256 240 YSISGIGTV-PVGRVESGVIKPGQKVTFMPAGV 271 (428)
T ss_pred EEecCCceE-EEEEEeeeeeccCCEEEEecCcc
Confidence 9977 9999 78999999999999999999864
No 3
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.2e-44 Score=389.81 Aligned_cols=267 Identities=42% Similarity=0.798 Sum_probs=247.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++++||+++||+++|||||+++|++..+.+..+.+.++...+...++++|.|+|.+|...+|+.+|+|++.....|++.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46789999999999999999999999999998888877777777788889999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc--cc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~--~~ 420 (536)
++.++|||||||++|..++..+++.+|++|||||+..|.++.++. +.+|+++|+.++..+++|++|||+||||+. .|
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~-~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS-KDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccC-CCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 999999999999999999999999999999999999988777665 357999999999999998899999999987 56
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEE
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~ 500 (536)
+..+|+++.+++..+++..|+....++|+|+||++|+||.+... .+.||+|++|+++|+.+++|.+..++||||+|+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~---~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST---NLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccccc---CCcccchHHHHHHHhhcCCCccccCCCcEEEEE
Confidence 67889999999999999999987788999999999999987543 389999999999999999888889999999999
Q ss_pred EEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 501 d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
++|+++ .|+| +.|+|++|.|++||+|+++|++.
T Consensus 240 ~v~~~~g~G~v-v~G~V~~G~l~~Gd~v~~~P~~~ 273 (447)
T PLN00043 240 DVYKIGGIGTV-PVGRVETGVIKPGMVVTFGPTGL 273 (447)
T ss_pred EEEEeCCcEEE-EEEEEECCEEeeCCEEEEcCCCC
Confidence 999998 9988 89999999999999999999864
No 4
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.5e-44 Score=387.59 Aligned_cols=267 Identities=45% Similarity=0.841 Sum_probs=249.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+++||+++|||||+++|++..+.+..+.+.++.+.+...+++++.|+|.+|...+|+.+|+|++.....++++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc--cccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD--l~~~ 420 (536)
++.++|||||||.+|..++..++..+|++|||||+..|.++.++.. ..|+++|+.++..+++|++|||+|||| ++.|
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~-~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISK-DGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCC-CccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 9999999999999999999999999999999999999988777753 579999999999999998999999999 5668
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEE
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~ 500 (536)
++.+|+++.+++..+|..+++....++|||+||++|+|+.+... .+.||+|++|+++|+.+++|.+..++||+|+|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~---~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSD---NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCC---CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEE
Confidence 88999999999999999999987789999999999999986543 589999999999999998888888999999999
Q ss_pred EEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 501 d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
++|+++ .|+| ++|+|++|.|++||+|+++|++.
T Consensus 240 ~v~~v~g~Gtv-v~G~V~~G~l~~Gd~v~i~P~~~ 273 (446)
T PTZ00141 240 DVYKIGGIGTV-PVGRVETGILKPGMVVTFAPSGV 273 (446)
T ss_pred EEEecCCceEE-EEEEEEcceEecCCEEEEccCCc
Confidence 999999 9998 89999999999999999999864
No 5
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.5e-42 Score=372.35 Aligned_cols=260 Identities=45% Similarity=0.806 Sum_probs=240.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+||+|+|||||+++|++..+.+....++++.+.+...|+.++.++|.+|...+|+++|+|++.....++++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCC--CcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV--GSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~--g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
++.++|||||||++|...+..++..+|++|||||+.. + +..++++++.++..++++++|||+||+|+..+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGG--------VMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCC--------CCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 9999999999999999999999999999999999986 4 45788899999999998779999999999876
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEE
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~ 500 (536)
...+++.+.+++..+++.+++....++++++||++|+|+.++.+ .+.||+|++|+++|+.++++.+..++||+|+|.
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~---~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~ 231 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE---NMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQ 231 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc---CCCcccHHHHHHHHhcCCCCccccCCCcEEEEE
Confidence 66778888899999999899876667899999999999998664 489999999999999999888888999999999
Q ss_pred EEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 501 d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
++|.++ .|+| ++|+|++|+|++||+|+++|++.
T Consensus 232 ~~~~~~g~G~v-v~G~v~~G~v~~Gd~v~i~P~~~ 265 (425)
T PRK12317 232 DVYSISGVGTV-PVGRVETGVLKVGDKVVFMPAGV 265 (425)
T ss_pred EEEeeCCCeEE-EEEEEeeccEecCCEEEECCCCC
Confidence 999999 9998 89999999999999999999864
No 6
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-43 Score=353.02 Aligned_cols=260 Identities=33% Similarity=0.567 Sum_probs=237.8
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhC--CCccchhccccccccccccceEEEEEEEEee
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQG--KGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~g--kgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
.+..++++.+|+++-||||||+||++....+-..++.+.++.....+ .+.+.|+..+|....||+.|||+++++.+|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 45679999999999999999999999999999999888888776333 4567889999999999999999999999999
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
+..+.|+|.|||||+.|..+|..++..||++|++|||..| +..|++.|..++..+|++++||++|||||+++
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--------vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--------VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--------hHHHhHHHHHHHHHhCCcEEEEEEeeeccccc
Confidence 9999999999999999999999999999999999999988 67899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEE
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~ 500 (536)
++++|++|..++..|.+.+++... .+||+||+.|+|+..... .|+||+|++||+.|+.+........+||||||+
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~~--~~IPiSAl~GDNV~~~s~---~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ 229 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKDV--RFIPISALLGDNVVSKSE---NMPWYKGPTLLEILETVEIADDRSAKAFRFPVQ 229 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc--eEEechhccCCccccccc---CCCcccCccHHHHHhhccccccccccceeeceE
Confidence 999999999999999999999654 889999999999987643 599999999999999998888888899999999
Q ss_pred EEEEeCCCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009378 501 DVLKSQHGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 501 d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
.+.+......-..|+|.+|++++||.|++.|+|+.
T Consensus 230 ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~ 264 (431)
T COG2895 230 YVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKT 264 (431)
T ss_pred EecCCCCcccccceeeeccceecCCeEEEccCCCe
Confidence 99998722222579999999999999999999864
No 7
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.4e-41 Score=363.23 Aligned_cols=263 Identities=43% Similarity=0.791 Sum_probs=241.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+|+||+|+|||||+++|++..+.+..+.+.++.+.+...|+++|.|+|.+|...+|+.+|+|++.....+.+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 46789999999999999999999999999999998888989999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..++|||||||++|...+..++..+|++|||||++.+.++ ...++.+++.+++.++++++|||+||+|+..++.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 99999999999999999999999999999999999987432 3467888888888888877999999999987777
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEEEE
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~d~ 502 (536)
+.++++.+++..+++..++....++|+++||++|+||.+... .+.||+|++|+++|+.++++.+..++||+|+|+++
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~---~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v 235 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE---NTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDV 235 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc---CCccccchHHHHHHhcCCCCCCccCCCcEEEEEEE
Confidence 888889999999999999876678999999999999998654 37899999999999999888888899999999999
Q ss_pred EEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 503 LKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 503 ~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
|.++ +|+| ++|+|++|.|++||+|+++|.++
T Consensus 236 ~~~~g~G~v-v~G~v~~G~i~~gd~v~i~P~~~ 267 (426)
T TIGR00483 236 YSITGVGTV-PVGRVETGVLKPGDKVVFEPAGV 267 (426)
T ss_pred EecCCCeEE-EEEEEccceeecCCEEEECCCCc
Confidence 9999 9998 89999999999999999999864
No 8
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=3.1e-40 Score=352.43 Aligned_cols=254 Identities=34% Similarity=0.588 Sum_probs=230.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCC--ccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkg--s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
++|+|+||+|+|||||+++|++..+.+..+.+.++.+++...|+. +|.|+|.+|...+|+.+|+|++.....+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 579999999999999999999999999998888888888888774 799999999999999999999999999999999
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhH
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.++|||||||++|...+..++..+|++|||||+..| +..|+++++.++..++++++|||+||||+..++.++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G--------~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG--------VLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CccccHHHHHHHHHcCCCcEEEEEEecccccchHHH
Confidence 999999999999999999999999999999999988 567999999999999998899999999998777778
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEEEEEE
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLK 504 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~d~~~ 504 (536)
++++.+.+..+++.+++. .++++|+||++|+|+.++.+ .+.||+|++|+++|+.++++.+..++||+|+|.++++
T Consensus 153 ~~~i~~~~~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~ 227 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFR--DVTFIPLSALKGDNVVSRSE---SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNR 227 (406)
T ss_pred HHHHHHHHHHHHHHcCCC--CccEEEeecccCCCCccccc---CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEee
Confidence 888999999998888874 56899999999999997653 4899999999999999988888889999999999987
Q ss_pred eC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 505 SQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 505 ~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
.. .+.- +.|+|++|+|++||+|.++|.+.
T Consensus 228 ~~~~~~g-~~G~v~~G~l~~gd~v~i~P~~~ 257 (406)
T TIGR02034 228 PNLDFRG-YAGTIASGSVHVGDEVVVLPSGR 257 (406)
T ss_pred cCCCcEE-EEEEEecceeecCCEEEEeCCCc
Confidence 65 2322 57999999999999999999753
No 9
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=6.6e-40 Score=355.73 Aligned_cols=260 Identities=33% Similarity=0.546 Sum_probs=232.3
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCC--ccchhccccccccccccceEEEEEEEEe
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEERERGITMTVAVAYF 339 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkg--s~~~~~~~d~~~~e~~~GiTi~~~~~~~ 339 (536)
+.+..++|+|+||+|+|||||+++|++..+.+..+.+.++.+++...|+. +|.|+|.+|...+|+.+|+|++..+..+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 34677999999999999999999999999999998888888888888874 7899999999999999999999999999
Q ss_pred ecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009378 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 340 ~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
.+++..++|||||||++|...+..++..+|++|||||+..| +..|+++++.++..++++++|||+||||++.
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G--------~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG--------VLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 99999999999999999999999999999999999999987 5678999999999999888999999999997
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEE
Q 009378 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I 499 (536)
++.++++++.+++..+++.+++. ..+++||+||++|+|+.++.. .++||+|++|+++|+.++++.+..++||||+|
T Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~---~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I 250 (474)
T PRK05124 175 YSEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSE---SMPWYSGPTLLEVLETVDIQRVVDAQPFRFPV 250 (474)
T ss_pred chhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccc---cccccchhhHHHHHhhcCCCCCCCCCCceeeE
Confidence 77778888999998888877742 357899999999999997654 47999999999999999888888899999999
Q ss_pred EEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 500 ~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
.++++.. .... +.|+|++|.|++||+|+++|.++
T Consensus 251 ~~v~~~~~~~~g-~~G~V~sG~l~~Gd~v~i~P~~~ 285 (474)
T PRK05124 251 QYVNRPNLDFRG-YAGTLASGVVKVGDRVKVLPSGK 285 (474)
T ss_pred EEEEecCCcccc-eEEEEEeEEEecCCEEEEecCCc
Confidence 9998764 1112 47999999999999999999864
No 10
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-39 Score=328.14 Aligned_cols=268 Identities=41% Similarity=0.752 Sum_probs=253.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.+.++|++++||+++||||+-+.|++..+.++.+++.++++.+.+.++.++++.|.+|...++|..|-|+.++..+|++.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc--ccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA--VQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl--~~~ 420 (536)
...++|+|+|||..|..+|+.++.+||+.+|||.|..|.|+.+|+. .+|+++|..+++..++.++|+++||||- ++|
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFer-GgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhccccc-ccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999999999999986 5799999999999999999999999994 579
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCC-CccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEE
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~-~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I 499 (536)
+.++++++.+.+..+|+.+|++.. .+.|+|+|.++|.++.+... ..+.||.|+++|+.|+.++...|..+.||+++|
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPWYKGPIFLEYLDELPHLERILNGPIRCPV 312 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc--ccCCcccCCccceehhccCcccccCCCCEEeeh
Confidence 999999999999999999998753 45799999999999998765 469999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009378 500 CDVLKSQHGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 500 ~d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
.+-|+. .|+| +.|+|++|.|++||.+++||..++
T Consensus 313 ~~Kykd-mGTv-v~GKvEsGsi~kg~~lvvMPnk~~ 346 (501)
T KOG0459|consen 313 ANKYKD-MGTV-VGGKVESGSIKKGQQLVVMPNKTN 346 (501)
T ss_pred hhhccc-cceE-EEEEecccceecCCeEEEccCCcc
Confidence 999998 4988 899999999999999999999764
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=349.67 Aligned_cols=258 Identities=34% Similarity=0.571 Sum_probs=231.5
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCC--CccchhccccccccccccceEEEEEEEEee
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gk--gs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
.++.++|+|+||+|+|||||+++|++..+.+..+.+.++.+.+...|. +++.++|.+|...+|+.+|+|++.....++
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 355689999999999999999999999999998888888888888887 889999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
+++..++|||||||++|...+..++..+|++|||||+..| +..++++++.++..++++++|||+||+|++.+
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g--------~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG--------VLTQTRRHSFIASLLGIRHVVLAVNKMDLVDY 172 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------ccccCHHHHHHHHHhCCCeEEEEEEecccccc
Confidence 9999999999999999999999999999999999999987 56789999999999998889999999999877
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEE
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~ 500 (536)
+.++++++..++..+++.+++ ..++++|+||++|+|+.+... .+.||.|++|+++|+.++++.+..++||+|+|.
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~ 247 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSA---RMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQ 247 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCC--CCccEEEEecccCCCcccccc---CCCcccHhHHHHHHhcCCCCCCcCCCCceeeEE
Confidence 777888888999999888888 346789999999999997654 379999999999999998887778999999999
Q ss_pred EEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 501 d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
++++.. .+.- +.|+|++|+|++||+|.++|.+.
T Consensus 248 ~v~~~~~~~~g-~~G~v~~G~l~~gd~v~i~P~~~ 281 (632)
T PRK05506 248 YVNRPNLDFRG-FAGTVASGVVRPGDEVVVLPSGK 281 (632)
T ss_pred EEEecCCCceE-EEEEEecceeecCCEEEEcCCCc
Confidence 998864 2222 57999999999999999999864
No 12
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.8e-36 Score=322.39 Aligned_cols=246 Identities=33% Similarity=0.514 Sum_probs=211.0
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..+++++|+|+||+|+|||||+++|++..+.+..... ..+ ..+|....|+.+|+|++.....+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~~-~~~d~~~~e~~rg~T~~~~~~~~~~ 72 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KKY-DEIDSAPEEKARGITINTAHVEYET 72 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------ccc-ccccCChhhhcCCEeEEccEEEEcc
Confidence 4577899999999999999999999987665533221 111 2578889999999999999888988
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
++..++|+|||||.+|...+..++..+|++|||||+..| +..++++++.++..+++|++|||+||+|++..
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~- 143 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD- 143 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH-
Confidence 899999999999999999999999999999999999987 56899999999999999878899999999853
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCC--cccccccch-hhHHHHHHh-cCCCCCCCCCCeeE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD--GRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLM 497 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~--~~~~~Wy~g-~tLle~L~~-l~~~~~~~~~P~~~ 497 (536)
.+.++.+.+++..+|+..++....++++|+||++|+|+.+.... ....+||++ ++|+++|+. +++|.+..++||+|
T Consensus 144 ~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~ 223 (409)
T CHL00071 144 EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLM 223 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEE
Confidence 45677888899999999998766789999999999998753321 113589985 999999977 45677788899999
Q ss_pred EEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 498 ~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
+|+++|.++ .|+| ++|+|++|+|++||.|.++|.
T Consensus 224 ~I~~v~~~~g~G~V-v~G~V~sG~l~~Gd~v~i~p~ 258 (409)
T CHL00071 224 AIEDVFSITGRGTV-ATGRIERGTVKVGDTVEIVGL 258 (409)
T ss_pred EEEEEEEeCCCeEE-EEEEEecCEEeeCCEEEEeeC
Confidence 999999999 9988 899999999999999999885
No 13
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.2e-36 Score=320.66 Aligned_cols=241 Identities=34% Similarity=0.521 Sum_probs=208.1
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
+.++.++|+++||+|+|||||+++|++.. ...+++.+...+.++.+++|+.+|+|++.....+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~ 72 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET 72 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhh---------------hhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC
Confidence 45778999999999999999999999532 123344444446789999999999999999988988
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
++..++|||||||++|...+..++..+|++|||||+..+ +..++++++.++..+++|.+|||+||+|+.. .
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~-~ 143 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVD-D 143 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEecCCcc-h
Confidence 889999999999999999999999999999999999987 4679999999999999996667899999985 3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccch-hhHHHHHHh-cCCCCCCCCCCeeEEE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 499 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g-~tLle~L~~-l~~~~~~~~~P~~~~I 499 (536)
++.++.+..++..+++.+++....++++++||++|.|... .+.||.+ ++|+++|+. +++|.+..++||+|+|
T Consensus 144 ~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~------~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I 217 (396)
T PRK12735 144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDD------DEEWEAKILELMDAVDSYIPEPERAIDKPFLMPI 217 (396)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCC------CCcccccHHHHHHHHHhcCCCCCccCCCCeEEEE
Confidence 4567777788999999988865568999999999999642 4789975 899999987 4567778899999999
Q ss_pred EEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 500 ~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+++|.++ .|+| ++|+|++|+|++||+|+++|.+
T Consensus 218 ~~~f~v~g~Gtv-v~G~v~~G~i~~gd~v~i~p~~ 251 (396)
T PRK12735 218 EDVFSISGRGTV-VTGRVERGIVKVGDEVEIVGIK 251 (396)
T ss_pred EEEEecCCceEE-EEEEEEecEEeCCCEEEEecCC
Confidence 9999999 9988 8999999999999999999974
No 14
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.5e-36 Score=325.95 Aligned_cols=248 Identities=32% Similarity=0.493 Sum_probs=212.7
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..++.++|+++||+|+|||||+++|++..+.+..+...+ ...+|...+|+.+|+|++.....+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 346789999999999999999999998776654432211 12578889999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
++..++|||||||++|..++..++..+|++|||||+..| +..|+++|+.++..+++|++||++||||++. .
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~-~ 212 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-D 212 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEecccccC-H
Confidence 999999999999999999999999999999999999987 5789999999999999998899999999985 3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCC--Ccccccccc-hhhHHHHHHhc-CCCCCCCCCCeeE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD--DGRLLSWYK-GPCLLDAIDSL-RPPPREFSKPLLM 497 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~--~~~~~~Wy~-g~tLle~L~~l-~~~~~~~~~P~~~ 497 (536)
++.++.+.+++..+|+.++|....++|+|+||++|.|+..... ......||+ +++|+++|+.+ ++|.+..++||+|
T Consensus 213 ~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~ 292 (478)
T PLN03126 213 EELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLL 292 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceee
Confidence 5567888889999999999977789999999999987742110 011248998 68999999875 4577778899999
Q ss_pred EEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 498 ~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
+|+++|+++ +|+| ++|+|++|.|++||.|+++|.+.
T Consensus 293 ~I~~vf~v~g~GtV-v~G~V~sG~i~~Gd~v~i~p~~~ 329 (478)
T PLN03126 293 AVEDVFSITGRGTV-ATGRVERGTVKVGETVDIVGLRE 329 (478)
T ss_pred EEEEEEEeCCceEE-EEEEEEcCeEecCCEEEEecCCC
Confidence 999999999 9998 89999999999999999999863
No 15
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=8.3e-36 Score=317.36 Aligned_cols=239 Identities=34% Similarity=0.519 Sum_probs=205.5
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..++.++|+|+||+|+|||||+++|++.. ...|++.+...+.+|...+|+++|+|++.....++.
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~ 72 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhH---------------HHhhcccccccccccCCHHHHhcCcceeeEEEEEcC
Confidence 35678999999999999999999998431 123444444446789999999999999999999988
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++|||||||++|...+..++..+|++|||||+..| ...++++++.++..+++|++|||+||+|++..
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~- 143 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDD- 143 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEecccCCH-
Confidence 889999999999999999999999999999999999987 56899999999999999977789999999852
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccc-hhhHHHHHHhc-CCCCCCCCCCeeEEE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK-GPCLLDAIDSL-RPPPREFSKPLLMPI 499 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~-g~tLle~L~~l-~~~~~~~~~P~~~~I 499 (536)
.+.++.+.+++..+++..++....++++++||++|.+-. ..||+ +++|+++|+.+ ++|.+..++||+|+|
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~--------~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V 215 (394)
T TIGR00485 144 EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGD--------AEWEAKILELMDAVDEYIPTPERETDKPFLMPI 215 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccC--------CchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEE
Confidence 345666778899999998886666899999999986432 47997 48999999875 567777889999999
Q ss_pred EEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 500 ~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+++|.++ +|+| ++|+|++|+|++||+|+++|.+
T Consensus 216 ~~vf~~~g~G~V-v~G~v~~G~l~~gd~v~i~p~~ 249 (394)
T TIGR00485 216 EDVFSITGRGTV-VTGRVERGIVKVGEEVEIVGLK 249 (394)
T ss_pred EEEEeeCCceEE-EEEEEEeeEEeCCCEEEEecCC
Confidence 9999999 9998 8999999999999999999953
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=7.5e-36 Score=317.65 Aligned_cols=239 Identities=34% Similarity=0.536 Sum_probs=205.8
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..++++||+|+||+++|||||+++|++.. ...|++.+...+.+|...+|+.+|+|++.....+..
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~ 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVL---------------AERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhh---------------hhhccccccchhhhcCCHHHHhcCccEEEEeeEecC
Confidence 35678999999999999999999998421 112444444344789999999999999999888888
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
++..++|||||||++|...+..++..+|++|||||+..| +..++++++.++..+++|++|||+||+|++. .
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g--------~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~-~ 143 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYLVVFLNKVDLVD-D 143 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCEEEEEEEecCCcc-h
Confidence 889999999999999999999999999999999999987 5689999999999999987889999999974 3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccch-hhHHHHHHh-cCCCCCCCCCCeeEEE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 499 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g-~tLle~L~~-l~~~~~~~~~P~~~~I 499 (536)
++.++.+.+++..+++..++....++++++||++|.+.. ..||.+ ++|+++|.. +++|.+..++||+|+|
T Consensus 144 ~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~--------~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I 215 (394)
T PRK12736 144 EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGD--------PKWEDAIMELMDAVDEYIPTPERDTDKPFLMPV 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCC--------CcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence 456666778999999999987667899999999985432 479964 899999976 5667788899999999
Q ss_pred EEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 500 ~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+++|.++ .|+| ++|+|++|+|++||+|+++|.+
T Consensus 216 ~~~~~~~g~G~V-v~G~v~~G~l~~gd~v~i~p~~ 249 (394)
T PRK12736 216 EDVFTITGRGTV-VTGRVERGTVKVGDEVEIVGIK 249 (394)
T ss_pred EEEEecCCcEEE-EEEEEeecEEecCCEEEEecCC
Confidence 9999999 9998 8999999999999999999973
No 17
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.6e-35 Score=315.26 Aligned_cols=241 Identities=34% Similarity=0.524 Sum_probs=205.8
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..++.+||+|+||+|+|||||+++|++.. ...+++.....+.+|...+|+.+|+|++.....+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~ 72 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET 72 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhh---------------hhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC
Confidence 34678999999999999999999999532 111222222223689999999999999999888888
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
++..++|+|||||.+|...+..++..+|++|||||+..| +..++++++.++..+++|.+||++||+|+.. .
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~-~ 143 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVD-D 143 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHHcCCCEEEEEEeecCCcc-h
Confidence 889999999999999999999999999999999999987 5689999999999999985567999999985 3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccch-hhHHHHHHh-cCCCCCCCCCCeeEEE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 499 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g-~tLle~L~~-l~~~~~~~~~P~~~~I 499 (536)
.+.++.+..++..+++.+++....++++|+||++|.+.. ..+.||.+ ++|+++|+. +++|.+..++||+|+|
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~------~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I 217 (396)
T PRK00049 144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD------DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPI 217 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCC------CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEE
Confidence 456777888999999999986667899999999997732 25899985 899999987 5667788899999999
Q ss_pred EEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 500 ~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+++|+++ +|+| ++|+|.+|+|++||+|+++|.+
T Consensus 218 ~~~f~v~g~G~V-v~G~v~~G~i~~gd~v~i~p~~ 251 (396)
T PRK00049 218 EDVFSISGRGTV-VTGRVERGIIKVGEEVEIVGIR 251 (396)
T ss_pred EEEEeeCCceEE-EEEEEeeeEEecCCEEEEeecC
Confidence 9999999 9988 8999999999999999999873
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=9.1e-34 Score=305.43 Aligned_cols=237 Identities=36% Similarity=0.553 Sum_probs=199.5
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhc-cccccccccccceEEEEEEEEee
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW-ALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~-~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
..++++||+++||+|+|||||+++|++.. ...|+.. .+.+ .+|...+|+.+|+|++.....++
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~~ 120 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHVEYE 120 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEEEEc
Confidence 45778999999999999999999997321 1112221 1222 57889999999999999999999
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
.++.+++|+|||||.+|..++..++..+|++|||||+..| +..|+++++.++..+++|.+|||+||+|++.
T Consensus 121 ~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~~gip~iIvviNKiDlv~- 191 (447)
T PLN03127 121 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQVGVPSLVVFLNKVDVVD- 191 (447)
T ss_pred CCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEeeccCC-
Confidence 9999999999999999999999999999999999999987 5689999999999999987789999999985
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEccc---CCCcccCCCCcccccccchhhHHHHHHh-cCCCCCCCCCCee
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPLL 496 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~---GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~~~~~P~~ 496 (536)
..+.++.+.+++..++..+++....++++|+||+. |+|+. ..|..+++|+++|+. +++|.+..++||+
T Consensus 192 ~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~--------~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr 263 (447)
T PLN03127 192 DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE--------IGKNAILKLMDAVDEYIPEPVRVLDKPFL 263 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc--------cccchHHHHHHHHHHhCCCCCcccccceE
Confidence 24456667778888888888866678999999874 44432 346677899999976 4567778889999
Q ss_pred EEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 497 ~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
|+|+++|.++ +|+| ++|+|++|.|++||.|.++|.
T Consensus 264 ~~I~~vf~v~g~GtV-vtG~v~~G~i~~Gd~v~i~p~ 299 (447)
T PLN03127 264 MPIEDVFSIQGRGTV-ATGRVEQGTIKVGEEVEIVGL 299 (447)
T ss_pred eeEEEEEEcCCceEE-EEEEEEccEEecCCEEEEccc
Confidence 9999999999 9998 899999999999999999975
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-33 Score=279.71 Aligned_cols=237 Identities=36% Similarity=0.573 Sum_probs=201.9
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..+.++||+.+||+++|||||..+|+..... ..+.....| ...|..++|+.+|||+...+..+++
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~--------------~~~~~~~~y-~~id~aPeEk~rGITIntahveyet 72 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAK--------------KGGAEAKAY-DQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHh--------------hccccccch-hhhccCchHhhcCceeccceeEEec
Confidence 4567899999999999999999999843211 001111111 2357789999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..+..+|+|||.+|+++|+.++.+.|++|||+.|..| .++|+++|+.++++.|+|++|+++||+|+++ +
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG--------pmPqTrEHiLlarqvGvp~ivvflnK~Dmvd-d 143 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYIVVFLNKVDMVD-D 143 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC--------CCCcchhhhhhhhhcCCcEEEEEEecccccC-c
Confidence 999999999999999999999999999999999999988 6899999999999999999999999999996 5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccch-hhHHHHHHh-cCCCCCCCCCCeeEEE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 499 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g-~tLle~L~~-l~~~~~~~~~P~~~~I 499 (536)
++.++.+..+++.+|..++|.....|++.-||+..-.-. ..|..- ..|+++++. +++|.|..++||+|+|
T Consensus 144 ~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~--------~~~~~~i~eLm~avd~yip~Per~~dkPflmpv 215 (394)
T COG0050 144 EELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGD--------AKWEAKIEELMDAVDSYIPTPERDIDKPFLMPV 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCC--------cchHHHHHHHHHHHHhcCCCCCCcccccccccc
Confidence 788899999999999999998788899999988643211 235432 358888865 7899999999999999
Q ss_pred EEEEEeC-CCeEEEEEEEEeeEEecCCEEEEec
Q 009378 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFL 531 (536)
Q Consensus 500 ~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p 531 (536)
.++|.+. +|+| ++|||+.|+|++|+.|.+--
T Consensus 216 EdvfsIsgrgtv-vtGrVeRG~lkvg~eveivG 247 (394)
T COG0050 216 EDVFSISGRGTV-VTGRVERGILKVGEEVEIVG 247 (394)
T ss_pred eeeEEEcCceeE-EEEEEeeeeeccCCEEEEec
Confidence 9999999 9999 89999999999999988643
No 20
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=6.1e-33 Score=272.59 Aligned_cols=216 Identities=55% Similarity=0.991 Sum_probs=187.8
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
||+|+||+++|||||+++|++..+.+....+.+....+...|+.++.|++.+|....|+.+|+|++.....+.+.+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999999999988777666666677778888899999999999999999999999999999999999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc--cchhHH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YSKDRF 425 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~--~~~e~~ 425 (536)
|||||||.+|...+..++..+|++|||||+..+.++..+. ...++.+++.++..++++++|||+||+|+.. +++..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFE-KGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccc-cccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 9999999999999999999999999999999864433332 3457788888888888777999999999983 446678
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCC
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~ 487 (536)
+++.+.+..+++.+++....++++++||++|+||.+... .++||+|++|+++|+.+.++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~---~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSE---NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCC---CCCCccCCcHHHHHhCCCCC
Confidence 888999999999988876678999999999999997553 68999999999999987664
No 21
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=1.9e-32 Score=266.98 Aligned_cols=207 Identities=36% Similarity=0.646 Sum_probs=181.2
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
||+|+||+|+|||||+++|++..+.+..+.+.++++.....+++.+.+.+.+|....|+.+|+|++.....+.+.+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999999988876666666666667777888899999999999999999999999999999999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ee 427 (536)
|||||||.+|...+..++..+|++|||||+..+ +..++..+..++...+.|++|+|+||+|+..+....++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHH
Confidence 999999999998888899999999999999977 456777777788888877788899999998765666778
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCC
Q 009378 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (536)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~ 487 (536)
+...+..+++.+++. .+++|++||++|.|+.+..+ .+.||.|+|||++|+.++|+
T Consensus 153 i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~~---~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 153 IVADYLAFAAKLGIE--DITFIPISALDGDNVVSRSE---NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCCC---CCCCCCCCcHHHHHhcCCCC
Confidence 888888888888873 35789999999999998653 58999999999999999876
No 22
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-32 Score=275.33 Aligned_cols=241 Identities=36% Similarity=0.560 Sum_probs=201.1
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..++++||+-+||+++|||||..+|+.-... .|...+.--.-.|..++|+.+|||+...+..+++
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~---------------~g~A~~~kydeID~APEEkaRGITIn~aHveYeT 114 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAE---------------KGGAKFKKYDEIDKAPEEKARGITINAAHVEYET 114 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHh---------------ccccccccHhhhhcChhhhhccceEeeeeeeeec
Confidence 4577899999999999999999999832211 1111111112357889999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
..+.+.-+|+|||.+|+++|+.+..+.|++||||.|++| .++|++||+.++++.|+++++|.+||.|+++ +
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG--------~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-d 185 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG--------PMPQTREHLLLARQVGVKHIVVFINKVDLVD-D 185 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC--------CCcchHHHHHHHHHcCCceEEEEEecccccC-C
Confidence 999999999999999999999999999999999999998 6899999999999999999999999999996 4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCCCCCCCeeEEEE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPLLMPIC 500 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~~~~~P~~~~I~ 500 (536)
++.++-+.-+++++|..+||...++|+|.-||+-..-=.+ ++.. . -.-..|+++++. +|.|.|+.++||.|+|.
T Consensus 186 ~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~-peig-~---~aI~kLldavDsyip~P~R~~~~pFl~pie 260 (449)
T KOG0460|consen 186 PEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQ-PEIG-L---EAIEKLLDAVDSYIPTPERDLDKPFLLPIE 260 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCC-cccc-H---HHHHHHHHHHhccCCCcccccCCCceeehh
Confidence 6778888889999999999999999999988875321111 0000 0 001248888876 89999999999999999
Q ss_pred EEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 501 d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
++|.++ +|+| ++|||+.|+|++|+.+-+.-.
T Consensus 261 ~vfsI~GRGTV-vtGrlERG~lKkG~e~eivG~ 292 (449)
T KOG0460|consen 261 DVFSIPGRGTV-VTGRLERGVLKKGDEVEIVGH 292 (449)
T ss_pred heeeecCCceE-EEEEEeecccccCCEEEEecc
Confidence 999999 9999 899999999999999987544
No 23
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.3e-31 Score=298.54 Aligned_cols=212 Identities=27% Similarity=0.406 Sum_probs=186.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-CCeE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 345 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~ 345 (536)
+.|+++||+++|||||+++|++. .++...+++.+|+|++..+.++.. .+..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~----------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~ 52 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV----------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRV 52 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----------------------------CCccchhcccCCceEEeeeEEEecCCCcE
Confidence 36899999999999999999842 135567788899999998887765 4567
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHH
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ 425 (536)
+.|||||||++|..++..++..+|++|||||+..| +++|+++++.++..++++++|||+||+|++ +++++
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg--------~~~qT~ehl~il~~lgi~~iIVVlNKiDlv--~~~~~ 122 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG--------VMAQTREHLAILQLTGNPMLTVALTKADRV--DEARI 122 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCccC--CHHHH
Confidence 99999999999999999999999999999999987 678999999999999998788999999998 45677
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEEEEEEe
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKS 505 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~d~~~~ 505 (536)
+.+.+++..++...++. .+++|++||++|+|+.+ |+++|..++.+.+..++||+|+|+++|.+
T Consensus 123 ~~v~~ei~~~l~~~~~~--~~~ii~VSA~tG~gI~~---------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v 185 (614)
T PRK10512 123 AEVRRQVKAVLREYGFA--EAKLFVTAATEGRGIDA---------------LREHLLQLPEREHAAQHRFRLAIDRAFTV 185 (614)
T ss_pred HHHHHHHHHHHHhcCCC--CCcEEEEeCCCCCCCHH---------------HHHHHHHhhccccCcCCCceEEEEEEecc
Confidence 77888888888877763 35789999999999974 99999888777777889999999999999
Q ss_pred C-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 506 Q-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 506 ~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
+ .|+| ++|+|.+|+|++||+|.++|.+.
T Consensus 186 ~G~GtV-vtGtv~sG~l~~Gd~v~i~p~~~ 214 (614)
T PRK10512 186 KGAGLV-VTGTALSGEVKVGDTLWLTGVNK 214 (614)
T ss_pred CCCeEE-EEEEEecceEecCCEEEEcCCCC
Confidence 8 9998 89999999999999999999754
No 24
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.98 E-value=9.7e-32 Score=289.74 Aligned_cols=216 Identities=26% Similarity=0.369 Sum_probs=180.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee--
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-- 340 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-- 340 (536)
....++|+++||+++|||||+.+|++. ..+.+.+|..+|+|++.++.++.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~----------------------------~~~r~~~E~~rGiTi~lGfa~~~~~ 82 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGV----------------------------KTVRFKREKVRNITIKLGYANAKIY 82 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCC----------------------------CcccchhhHHhCCchhccccccccc
Confidence 456799999999999999999999942 23556788888999887776542
Q ss_pred -------------cC------------------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccch
Q 009378 341 -------------SK------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTA 389 (536)
Q Consensus 341 -------------~~------------------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~ 389 (536)
.. ...++|||||||++|..+++.++..+|++||||||..+. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-------~ 155 (460)
T PTZ00327 83 KCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-------P 155 (460)
T ss_pred cCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------c
Confidence 11 247999999999999999999999999999999999751 4
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccc
Q 009378 390 KGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLL 469 (536)
Q Consensus 390 ~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~ 469 (536)
+.|+++|+.++..++++++|||+||+|++. .+++++..+++..+++.... ..+++||+||++|+||.
T Consensus 156 ~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~--~~~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G~nI~--------- 222 (460)
T PTZ00327 156 QPQTSEHLAAVEIMKLKHIIILQNKIDLVK--EAQAQDQYEEIRNFVKGTIA--DNAPIIPISAQLKYNID--------- 222 (460)
T ss_pred chhhHHHHHHHHHcCCCcEEEEEecccccC--HHHHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCCCCHH---------
Confidence 679999999999999998999999999983 45556666677777655432 45689999999999996
Q ss_pred cccchhhHHHHHH-hcCCCCCCCCCCeeEEEEEEEEeC---------CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 470 SWYKGPCLLDAID-SLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 470 ~Wy~g~tLle~L~-~l~~~~~~~~~P~~~~I~d~~~~~---------~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
.|+++|. .++++.+..++||+|+|.++|.+. +|+| ++|+|.+|+|++||.|.++|.+
T Consensus 223 ------~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtV-v~G~v~~G~l~~Gd~v~i~P~~ 289 (460)
T PTZ00327 223 ------VVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGV-AGGSILQGVLKVGDEIEIRPGI 289 (460)
T ss_pred ------HHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEE-EEEEEeeceEecCCEEEEccCc
Confidence 4999997 678787888999999999988664 4877 8999999999999999999975
No 25
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.2e-30 Score=289.60 Aligned_cols=215 Identities=30% Similarity=0.454 Sum_probs=180.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|++|+|||||+++|++.. ++...++..+|+|++..+..+..++..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~----------------------------~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIA----------------------------ADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc----------------------------CcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 479999999999999999998421 2344567789999999988888888999
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
.|||||||++|..++..++..+|++|||||++.| ++.++.+++.++..+++|++|||+||+|++ +.+.++
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G--------~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv--~~~~~~ 122 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG--------VMTQTGEHLAVLDLLGIPHTIVVITKADRV--NEEEIK 122 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCCCC--CHHHHH
Confidence 9999999999999999999999999999999987 568999999999999998899999999998 456666
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCCCCCCeeEEEEEEEEeC
Q 009378 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKSQ 506 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~~~~P~~~~I~d~~~~~ 506 (536)
.+.+++..+++..++.. .+++|++||++|+|+.++.. .|.+.+..+..+ ..++||+|+|+++|.++
T Consensus 123 ~~~~ei~~~l~~~~~~~-~~~ii~vSA~tG~GI~eL~~-----------~L~~l~~~~~~~--~~~~p~r~~Id~~f~v~ 188 (581)
T TIGR00475 123 RTEMFMKQILNSYIFLK-NAKIFKTSAKTGQGIGELKK-----------ELKNLLESLDIK--RIQKPLRMAIDRAFKVK 188 (581)
T ss_pred HHHHHHHHHHHHhCCCC-CCcEEEEeCCCCCCchhHHH-----------HHHHHHHhCCCc--CcCCCcEEEEEEEEecC
Confidence 77788888888776632 46899999999999986321 122223333332 25789999999999998
Q ss_pred -CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 507 -HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 507 -~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
.|+| ++|+|.+|+|++||+|.++|.+.
T Consensus 189 G~GtV-v~G~v~~G~i~~Gd~l~i~P~~~ 216 (581)
T TIGR00475 189 GAGTV-VTGTAFSGEVKVGDNLRLLPINH 216 (581)
T ss_pred CcEEE-EEEEEecceEecCCEEEECCCCc
Confidence 9998 89999999999999999999864
No 26
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=1.7e-30 Score=277.67 Aligned_cols=215 Identities=31% Similarity=0.469 Sum_probs=173.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (536)
++.++|+++|++++|||||+++|++. .++...+|+++|+|+...+..+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~----------------------------~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe----------------------------ecccCHhHHHcCceeEeccccccccc
Confidence 56799999999999999999999731 245667778889988877554321
Q ss_pred ------------------------CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHH
Q 009378 342 ------------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (536)
Q Consensus 342 ------------------------~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l 397 (536)
....++|||||||++|...+..++..+|++|||||+..+. ...++++++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l 126 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHL 126 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHH
Confidence 1467999999999999999999999999999999999872 157899999
Q ss_pred HHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhH
Q 009378 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 477 (536)
Q Consensus 398 ~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tL 477 (536)
.++..++++++|||+||+|++. .+...+..+++..+++... ...++++++||++|+|+.+ |
T Consensus 127 ~~l~~~gi~~iIVvvNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~---------------L 187 (406)
T TIGR03680 127 MALEIIGIKNIVIVQNKIDLVS--KEKALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDA---------------L 187 (406)
T ss_pred HHHHHcCCCeEEEEEEccccCC--HHHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHH---------------H
Confidence 9999999888999999999984 2333333344555554432 2346899999999999974 9
Q ss_pred HHHHHh-cCCCCCCCCCCeeEEEEEEEEeC-C--------CeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 478 LDAIDS-LRPPPREFSKPLLMPICDVLKSQ-H--------GQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 478 le~L~~-l~~~~~~~~~P~~~~I~d~~~~~-~--------G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+++|.. ++++.+..++||+|+|+++|.+. . |+| +.|+|.+|+|++||.|.++|.+
T Consensus 188 ~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~V-v~G~v~~G~i~~gd~v~i~P~~ 252 (406)
T TIGR03680 188 LEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGV-IGGSLIQGKLKVGDEIEIRPGI 252 (406)
T ss_pred HHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeE-EEEEEEeCEEeCCCEEEEccCc
Confidence 999976 67777778999999999999765 3 556 8999999999999999999985
No 27
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.1e-31 Score=280.10 Aligned_cols=222 Identities=34% Similarity=0.428 Sum_probs=194.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+..|++|+.|+++|||||..+|+..++.+....++ ..++|....||++|||+......+-+..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q----------------~q~LDkl~vERERGITIkaQtasify~~ 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQ----------------EQVLDKLQVERERGITIKAQTASIFYKD 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCch----------------hhhhhhhhhhhhcCcEEEeeeeEEEEEc
Confidence 567899999999999999999999988877665544 3578999999999999987766665555
Q ss_pred ---eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 344 ---YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ---~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
+.+++||||||.+|..+..+.+..||++||||||.+| ++.||...+.++.+.++. +|.|+||+|+..+
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG--------vqAQT~anf~lAfe~~L~-iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG--------VQAQTVANFYLAFEAGLA-IIPVLNKIDLPSA 192 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcC--------chHHHHHHHHHHHHcCCe-EEEeeeccCCCCC
Confidence 9999999999999999999999999999999999998 789999999999999998 9999999999876
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCeeEEE
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPI 499 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~~I 499 (536)
+.++ +..++..++ ++... +++.+||++|.|+.+ ||++| +++|||....++|||+.|
T Consensus 193 dpe~---V~~q~~~lF---~~~~~--~~i~vSAK~G~~v~~---------------lL~AII~rVPpP~~~~d~plr~Li 249 (650)
T KOG0462|consen 193 DPER---VENQLFELF---DIPPA--EVIYVSAKTGLNVEE---------------LLEAIIRRVPPPKGIRDAPLRMLI 249 (650)
T ss_pred CHHH---HHHHHHHHh---cCCcc--ceEEEEeccCccHHH---------------HHHHHHhhCCCCCCCCCcchHHHh
Confidence 5544 455666654 33222 679999999999975 99997 889999999999999999
Q ss_pred EEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 500 ~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
++.+... .|.+ +.++|..|.+++||+|..+.+++
T Consensus 250 fds~yD~y~G~I-~~vrv~~G~vrkGdkV~~~~t~~ 284 (650)
T KOG0462|consen 250 FDSEYDEYRGVI-ALVRVVDGVVRKGDKVQSAATGK 284 (650)
T ss_pred hhhhhhhhcceE-EEEEEeeeeeecCCEEEEeecCc
Confidence 9999999 9998 89999999999999999988764
No 28
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.97 E-value=2.1e-30 Score=287.53 Aligned_cols=233 Identities=27% Similarity=0.365 Sum_probs=192.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.||+|+||+++|||||+++|++..+.+...... -.+.+|....|+++|+|+......+.+.++.|
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v---------------~~~~~D~~~~ErerGiTI~~~~~~v~~~~~ki 66 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAV---------------AERVMDSNDLERERGITILAKNTAIRYNGTKI 66 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccc---------------eeecccCchHHHhCCccEEeeeEEEEECCEEE
Confidence 589999999999999999999877766443210 02578999999999999999999999999999
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
+|||||||.+|...+..+++.+|++|||||+..| .+.|++.++..+...++| +|||+||+|+.. .+++
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G--------~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~---a~~~ 134 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPS---ARPD 134 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CcHHHHHHHHHHHHCCCC-EEEEEECCCCCC---cCHH
Confidence 9999999999999999999999999999999987 568999999999999998 899999999864 2345
Q ss_pred HHHHHHHHHHHHcCCCCC--CccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCeeEEEEEEE
Q 009378 427 SIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVL 503 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~--~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~~I~d~~ 503 (536)
++..++..++..++.... .++++++||++|.+....... .+ .-..||++| ..+|+|..+.++||+++|++++
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~----~~-gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDP----SD-NMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCccc----cc-CHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 566677777766665432 468999999999865432110 01 112588887 5577777778899999999999
Q ss_pred EeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 504 KSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 504 ~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
..+ +|.+ +.|||++|+|++||.|+++|.
T Consensus 210 ~d~~~Grv-~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 210 YDEYLGRI-AIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred eeCCCceE-EEEEEEeCEEccCCEEEEecC
Confidence 999 9998 899999999999999999997
No 29
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=3.7e-30 Score=248.94 Aligned_cols=192 Identities=35% Similarity=0.546 Sum_probs=164.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+||+++|||||+++|++... ..|+....-.+.+|....|+.+|+|++.....++..+..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~ 66 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRH 66 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCeE
Confidence 58999999999999999999996421 112211111246888999999999999999999999999
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHH
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ 425 (536)
++|+|||||.+|...+..++..+|++|+|||+..| +..++++++.++...++|++|+|+||+|++. ..+.+
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~~ 137 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG--------PMPQTREHLLLARQVGVPYIVVFLNKADMVD-DEELL 137 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHHH
Confidence 99999999999999999999999999999999987 5689999999999999987899999999974 45567
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccc-hhhHHHHHHhcCCC
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK-GPCLLDAIDSLRPP 487 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~-g~tLle~L~~l~~~ 487 (536)
+.+.+++..+++.+++....++++|+||++|.|+.+ .+.||+ +++|+++|+.+.++
T Consensus 138 ~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~------~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 138 ELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD------PNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred HHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC------CCcchhcHhHHHHHHHhCCCC
Confidence 778889999999999987789999999999999864 378998 79999999876543
No 30
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.97 E-value=1.4e-29 Score=270.76 Aligned_cols=216 Identities=31% Similarity=0.439 Sum_probs=172.5
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.++|+++||.++|||||+++|.+ ..++...+|+.+|+|+...+..+.+.
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~----------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~~ 57 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTG----------------------------VWTDRHSEELKRGITIRLGYADATIR 57 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhC----------------------------eecccCHhHHhcCcEEEecccccccc
Confidence 35679999999999999999999963 12566778889999998765433221
Q ss_pred --------------------------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHH
Q 009378 343 --------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (536)
Q Consensus 343 --------------------------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~ 396 (536)
...++|||||||++|...++.++..+|++|+|||+..+. ...++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-------~~~~t~~~ 130 (411)
T PRK04000 58 KCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-------PQPQTKEH 130 (411)
T ss_pred cccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------CChhHHHH
Confidence 267999999999999999999999999999999999762 14678888
Q ss_pred HHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhh
Q 009378 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPC 476 (536)
Q Consensus 397 l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~t 476 (536)
+.++..++++++|||+||+|+... +......+++..+++... ...++++++||++|+|+.+
T Consensus 131 l~~l~~~~i~~iiVVlNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~--------------- 191 (411)
T PRK04000 131 LMALDIIGIKNIVIVQNKIDLVSK--ERALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDA--------------- 191 (411)
T ss_pred HHHHHHcCCCcEEEEEEeeccccc--hhHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHH---------------
Confidence 888888888779999999999843 232233344555554321 2346899999999999974
Q ss_pred HHHHHHh-cCCCCCCCCCCeeEEEEEEEEeC-C--------CeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 477 LLDAIDS-LRPPPREFSKPLLMPICDVLKSQ-H--------GQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 477 Lle~L~~-l~~~~~~~~~P~~~~I~d~~~~~-~--------G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
|++.|.. ++++.+..++||+|+|.++|.++ . |+| ++|+|.+|.|++||.|.++|.+
T Consensus 192 L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~V-v~G~v~~G~l~~gd~v~i~P~~ 257 (411)
T PRK04000 192 LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGV-IGGSLIQGVLKVGDEIEIRPGI 257 (411)
T ss_pred HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceE-EEEEEEeCEEecCCEEEEcCCc
Confidence 9999966 67777778999999999999765 3 557 8999999999999999999985
No 31
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=7.3e-30 Score=265.99 Aligned_cols=225 Identities=29% Similarity=0.450 Sum_probs=197.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (536)
..+..|+.|+.|.++|||||..||+..++.+..+.|. +..+|....||++|||+......+.+
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Yk 69 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNYK 69 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEEE
Confidence 3567899999999999999999999999999988876 46789999999999999866655443
Q ss_pred ----CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009378 342 ----KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 342 ----~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
..+.++|||||||.+|..+..+.+..|.++||||||++| ++.||.....++...++. +|-|+||+|+
T Consensus 70 ~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG--------veAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 70 AKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred eCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc--------hHHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 458999999999999999999999999999999999998 788999999999999998 9999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCee
Q 009378 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLL 496 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~ 496 (536)
..+++++ +++++...+ |+... ..+.+||++|.||.+ +|++| ..+|+|.-+.+.|++
T Consensus 141 P~Adper---vk~eIe~~i---Gid~~--dav~~SAKtG~gI~~---------------iLe~Iv~~iP~P~g~~~~pLk 197 (603)
T COG0481 141 PAADPER---VKQEIEDII---GIDAS--DAVLVSAKTGIGIED---------------VLEAIVEKIPPPKGDPDAPLK 197 (603)
T ss_pred CCCCHHH---HHHHHHHHh---CCCcc--hheeEecccCCCHHH---------------HHHHHHhhCCCCCCCCCCcce
Confidence 8776655 456666653 65444 459999999999986 99998 779999999999999
Q ss_pred EEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCCCC
Q 009378 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRFQH 536 (536)
Q Consensus 497 ~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~~ 536 (536)
..|.|.|..+ +|.| +..||+.|+|++||+|++|-+++.+
T Consensus 198 ALifDS~yD~Y~GVv-~~vRi~dG~ik~gdki~~m~tg~~y 237 (603)
T COG0481 198 ALIFDSWYDNYLGVV-VLVRIFDGTLKKGDKIRMMSTGKEY 237 (603)
T ss_pred EEEEeccccccceEE-EEEEEeeceecCCCEEEEEecCCEE
Confidence 9999999999 9988 7899999999999999999988653
No 32
>PRK10218 GTP-binding protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=273.79 Aligned_cols=234 Identities=26% Similarity=0.357 Sum_probs=191.3
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+..||+|+||+++|||||+++|++..+.+...... -.+.+|....|+.+|+|+......+.+.+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---------------~~~v~D~~~~E~erGiTi~~~~~~i~~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET---------------QERVMDSNDLEKERGITILAKNTAIKWNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccccc---------------ceeeeccccccccCceEEEEEEEEEecCCE
Confidence 46899999999999999999999876665432110 026789999999999999999999999999
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhH
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.++|||||||.+|...+..+++.+|++|||||+..| ...+++.++..+...++| +|||+||+|+... +
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~~gip-~IVviNKiD~~~a---~ 136 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFAYGLK-PIVVINKVDRPGA---R 136 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHHcCCC-EEEEEECcCCCCC---c
Confidence 999999999999999999999999999999999987 567899999999999998 7999999998743 3
Q ss_pred HHHHHHHHHHHHHHcCCCC--CCccEEEEEcccCCCcccCCCCcccccccch-hhHHHHH-HhcCCCCCCCCCCeeEEEE
Q 009378 425 FDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAI-DSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~--~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g-~tLle~L-~~l~~~~~~~~~P~~~~I~ 500 (536)
++.+.+++..++..++... ..+|++++||++|.|..+.... ..+ ..||++| +.+|+|.+..++||+++|+
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~------~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~ 210 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDM------AEDMTPLYQAIVDHVPAPDVDLDGPFQMQIS 210 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcccc------ccchHHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 4445566666665544432 3478999999999975432110 011 2578887 5688887788899999999
Q ss_pred EEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 501 d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
+++..+ +|.+ +.|||++|+|++||.|++.+.
T Consensus 211 k~~~d~~~G~i-~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 211 QLDYNSYVGVI-GIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred eeEecCCCcEE-EEEEEEeCcCcCCCEEEEecC
Confidence 999988 9998 899999999999999999876
No 33
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.96 E-value=1.1e-28 Score=274.25 Aligned_cols=221 Identities=29% Similarity=0.424 Sum_probs=179.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec---
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--- 341 (536)
+..||+|+||+|+|||||+++|++..+.++.+.+. .+.++....|+++|+|+......+.+
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~----------------~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR----------------EQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc----------------ccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 46799999999999999999999877766543211 35678888999999999877666544
Q ss_pred --CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009378 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 342 --~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
..+.++|||||||.+|...+..+++.+|++|||||++.+ ...++.+++..+...++| +|+|+||+|+..
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g--------~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~ 136 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG--------IEAQTLANVYLALENDLE-IIPVINKIDLPS 136 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCCc
Confidence 237899999999999999999999999999999999987 456777777766677887 999999999874
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCeeEE
Q 009378 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 498 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~~ 498 (536)
... +++.+++... +++.. ..++++||++|.|+.+ ||++| ..+++|....++||+++
T Consensus 137 ~~~---~~~~~el~~~---lg~~~--~~vi~vSAktG~GI~~---------------Lle~I~~~lp~p~~~~~~pl~~~ 193 (595)
T TIGR01393 137 ADP---ERVKKEIEEV---IGLDA--SEAILASAKTGIGIEE---------------ILEAIVKRVPPPKGDPDAPLKAL 193 (595)
T ss_pred cCH---HHHHHHHHHH---hCCCc--ceEEEeeccCCCCHHH---------------HHHHHHHhCCCCCCCCCCCeEEE
Confidence 322 2333344433 34321 2579999999999975 89998 56777878889999999
Q ss_pred EEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 499 I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
|++++..+ .|.+ +.|||++|+|++||+|+++|++.
T Consensus 194 V~~~~~d~~~G~v-~~~rV~sG~lk~Gd~v~~~~~~~ 229 (595)
T TIGR01393 194 IFDSHYDNYRGVV-ALVRVFEGTIKPGDKIRFMSTGK 229 (595)
T ss_pred EEEEEEeCCCcEE-EEEEEECCEEecCCEEEEecCCC
Confidence 99999999 9998 79999999999999999999864
No 34
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.96 E-value=1.1e-28 Score=274.75 Aligned_cols=222 Identities=29% Similarity=0.434 Sum_probs=181.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (536)
.+.+||+|+||+++|||||+++|++..+.+..+.+. .+.+|....|+++|+|+......+.+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~----------------~~~lD~~~~ErerGiTi~~~~v~~~~~~ 68 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK----------------AQVLDSMDLERERGITIKAQAVRLNYKA 68 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc----------------cccccCchHHhhcCCcccccEEEEEEEc
Confidence 456799999999999999999999887776543211 36788899999999999876665544
Q ss_pred ---CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 342 ---~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
..+.++|||||||.+|...+..+++.+|++|||||++.+ +..++.+++.++...++| +|+|+||+|+.
T Consensus 69 ~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g--------v~~qt~~~~~~~~~~~lp-iIvViNKiDl~ 139 (600)
T PRK05433 69 KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENDLE-IIPVLNKIDLP 139 (600)
T ss_pred cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 368899999999999999999999999999999999987 456787787777778888 99999999986
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCeeE
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLM 497 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~ 497 (536)
... ++++.+++... +++. ...++++||++|.|+.+ |+++| ..+++|....++||++
T Consensus 140 ~a~---~~~v~~ei~~~---lg~~--~~~vi~iSAktG~GI~~---------------Ll~~I~~~lp~P~~~~~~pl~~ 196 (600)
T PRK05433 140 AAD---PERVKQEIEDV---IGID--ASDAVLVSAKTGIGIEE---------------VLEAIVERIPPPKGDPDAPLKA 196 (600)
T ss_pred ccc---HHHHHHHHHHH---hCCC--cceEEEEecCCCCCHHH---------------HHHHHHHhCccccCCCCCCceE
Confidence 432 23333444333 3432 12479999999999975 99998 5577777788999999
Q ss_pred EEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 498 ~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
.|.+++..+ .|.+ +.|||++|+|++||+|+++|++.
T Consensus 197 ~Vfd~~~d~~~G~v-~~~rV~sG~Lk~Gd~i~~~~~~~ 233 (600)
T PRK05433 197 LIFDSWYDNYRGVV-VLVRVVDGTLKKGDKIKMMSTGK 233 (600)
T ss_pred EEEEEEecCCCceE-EEEEEEcCEEecCCEEEEecCCc
Confidence 999999999 9988 79999999999999999999864
No 35
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-28 Score=256.78 Aligned_cols=210 Identities=27% Similarity=0.372 Sum_probs=185.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
+.|+..||.++|||||+.+|++ ...+..+++..+|+|+++.+.+++.+++.+
T Consensus 1 mii~t~GhidHgkT~L~~altg----------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~ 52 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTG----------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVM 52 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcc----------------------------cccccchhhhhcCceEeeeeEeccCCCCce
Confidence 3588999999999999999984 245777889999999999999999999999
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
.|||.|||++|+.+|+.++..+|++||||++++| ++.|+.||+.++..+++++.|||+||+|++ ++.+++
T Consensus 53 ~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdllgi~~giivltk~D~~--d~~r~e 122 (447)
T COG3276 53 GFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLLGIKNGIIVLTKADRV--DEARIE 122 (447)
T ss_pred EEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhcCCCceEEEEeccccc--cHHHHH
Confidence 9999999999999999999999999999999988 789999999999999999999999999999 445655
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcC-CCCCCCCCCeeEEEEEEEEe
Q 009378 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR-PPPREFSKPLLMPICDVLKS 505 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~-~~~~~~~~P~~~~I~d~~~~ 505 (536)
+..+++...+. + ++.++|++|+.+|+||.+ |-+.|..++ .+.++.++||+++|+..|.+
T Consensus 123 ~~i~~Il~~l~---l--~~~~i~~~s~~~g~GI~~---------------Lk~~l~~L~~~~e~d~~~~fri~IDraFtV 182 (447)
T COG3276 123 QKIKQILADLS---L--ANAKIFKTSAKTGRGIEE---------------LKNELIDLLEEIERDEQKPFRIAIDRAFTV 182 (447)
T ss_pred HHHHHHHhhcc---c--ccccccccccccCCCHHH---------------HHHHHHHhhhhhhhccCCceEEEEeeEEEe
Confidence 55555555443 4 344679999999999986 777776655 57788999999999999999
Q ss_pred C-CCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009378 506 Q-HGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 506 ~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
+ +|+| |+|++++|.+++||++++.|.++.
T Consensus 183 KGvGTV-VtGtv~sG~V~v~D~L~l~p~~k~ 212 (447)
T COG3276 183 KGVGTV-VTGTVLSGEVKVGDKLYLSPINKE 212 (447)
T ss_pred ccccEE-EEeEEeeeeEEECCEEEEecCCCe
Confidence 9 9999 899999999999999999998764
No 36
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-28 Score=252.18 Aligned_cols=236 Identities=24% Similarity=0.359 Sum_probs=196.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+...||+|+.|+++|||||+..|+.+.+....+.-. ...+||....|+++|||+-.....+.+++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v---------------~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV---------------AERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccch---------------hhhhcCccchhhhcCcEEEeccceeecCC
Confidence 456899999999999999999999887776554211 12468999999999999988888888999
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
+.|+|+|||||.+|-.+..+.+...|.+||+|||.+| .++||+..+.-+.+++++ .|||+||+|+..+.+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG--------pMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~Arp- 137 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALALGLK-PIVVINKIDRPDARP- 137 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC--------CCCchhhhHHHHHHcCCC-cEEEEeCCCCCCCCH-
Confidence 9999999999999999999999999999999999998 689999999999999998 589999999986544
Q ss_pred HHHHHHHHHHHHHHHcCCCCC--CccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCCCCCCeeEEEE
Q 009378 424 RFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPIC 500 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~--~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~~I~ 500 (536)
+++..++..++-.++..+. .+|+++.||+.|.--..+.... -....||++| +++|+|..+.++||.|+|.
T Consensus 138 --~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~-----~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt 210 (603)
T COG1217 138 --DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEA-----DDMAPLFETILDHVPAPKGDLDEPLQMQVT 210 (603)
T ss_pred --HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccc-----cchhHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 3456666667766665544 3489999999987443322111 1123699998 7899999899999999999
Q ss_pred EEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 501 d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
..-... +|.+ ..|||++|++++||.|.++-.
T Consensus 211 ~Ldyn~y~GrI-gigRi~~G~vk~~q~V~~i~~ 242 (603)
T COG1217 211 QLDYNSYVGRI-GIGRIFRGTVKPNQQVALIKS 242 (603)
T ss_pred eecccccccee-EEEEEecCcccCCCeEEEEcC
Confidence 998888 9998 799999999999999998764
No 37
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=243.50 Aligned_cols=276 Identities=25% Similarity=0.349 Sum_probs=218.9
Q ss_pred cCCcChhhhhhhcccccccCCccccccccccCccccCcccccCCCCcCCCcceeEEEEEecCCCCchhhhhhhhhccccc
Q 009378 214 SHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (536)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~s~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i 293 (536)
...+.++++++.|+..+.....+-..++...-...+..+...+ ........++.|+++||+++|||||++.|+ ++.
T Consensus 66 l~~~~l~esievL~~la~evgA~i~~v~~~eg~~g~Vaev~vr-r~~~~~~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~- 141 (527)
T COG5258 66 LSDEKLVESIEVLRELAREVGASIYIVRVHEGTDGYVAEVLVR-RKTEEAPEHVLVGVAGHVDHGKSTLVGVLV--TGR- 141 (527)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEEEEeccCcEEEEEEEE-ecccCCCceEEEEEeccccCCcceEEEEEE--ecC-
Confidence 3344599999999998888777655555554445556555543 444456778999999999999999999997 121
Q ss_pred ccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-----------------------CeEEEEEe
Q 009378 294 TQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-----------------------NYHVVVLD 350 (536)
Q Consensus 294 ~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-----------------------~~~i~LID 350 (536)
.+.|+.....+++..++|.++|.+.++.+.-+.+. +..+.|+|
T Consensus 142 --------------~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVD 207 (527)
T COG5258 142 --------------LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVD 207 (527)
T ss_pred --------------CCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEe
Confidence 22334444567788888999999887776654332 25688999
Q ss_pred CCCcccchhhHhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHH
Q 009378 351 SPGHKDFVPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSI 428 (536)
Q Consensus 351 TPGh~df~~~~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei 428 (536)
|.||+.|...+++++ .+.|..+|||.|+.| ++.+++||+.++..+++| +|||++|+|+. +.++++.+
T Consensus 208 tvGHEpwLrTtirGL~gqk~dYglLvVaAddG--------~~~~tkEHLgi~~a~~lP-viVvvTK~D~~--~ddr~~~v 276 (527)
T COG5258 208 TVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--------VTKMTKEHLGIALAMELP-VIVVVTKIDMV--PDDRFQGV 276 (527)
T ss_pred cCCccHHHHHHHHHHhccccceEEEEEEccCC--------cchhhhHhhhhhhhhcCC-EEEEEEecccC--cHHHHHHH
Confidence 999999999999998 449999999999998 678999999999999999 99999999999 67888888
Q ss_pred HHHHHHHHHHcCCCC--------------------CCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCC
Q 009378 429 KVQLGTFLRSCGFKD--------------------ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPP 487 (536)
Q Consensus 429 ~~~L~~~l~~~g~~~--------------------~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~ 487 (536)
.+++..+|+..+--+ .-+|+|.+|+.+|+|++ ||+.+ ..+|..
T Consensus 277 ~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld----------------lL~e~f~~Lp~r 340 (527)
T COG5258 277 VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD----------------LLDEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH----------------HHHHHHHhCCcc
Confidence 899988887654211 13489999999999996 55555 555544
Q ss_pred -CCCCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009378 488 -PREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 488 -~~~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
......||.|.|+++|.++ +|+| +.|.|.+|.|..||+|+++|.+-+
T Consensus 341 r~~~d~g~flmYId~iYsVtGVGtV-vsGsV~~G~l~~gd~vllGP~~~G 389 (527)
T COG5258 341 RRWDDEGPFLMYIDKIYSVTGVGTV-VSGSVKSGILHVGDTVLLGPFKDG 389 (527)
T ss_pred cccCCCCCeEEEEEeeEEEeeeEEE-EeeeEEeeeeccCCEEEEccCCCC
Confidence 2367899999999999999 9999 899999999999999999998654
No 38
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.95 E-value=9.2e-28 Score=243.71 Aligned_cols=288 Identities=24% Similarity=0.277 Sum_probs=221.5
Q ss_pred CCCCCCCCCCcCCCCCCCCcCCcChhhhhhhcccccccCCccccccccccCccccCcccccC-CCCcCCCcceeEEEEEe
Q 009378 195 NHGTVDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWML-PDKKGDRMTQLNLAIVG 273 (536)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~v~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~IaIvG 273 (536)
+.|.+++++.|..+.+ ++.++...+...++.+...-+.++++.....- .+.|+. ........-.++|+|||
T Consensus 69 eiG~gsdg~~sGLsee-------d~eas~at~~~~ae~I~Adv~klreR~~~gG~-~~~~liRk~~~~~DF~E~RVAVVG 140 (641)
T KOG0463|consen 69 EIGAGSDGPKSGLSEE-------DLEASAATQLKIAEKIPADVTKLRERKQTGGG-TEVWLIRKPPTEKDFIEARVAVVG 140 (641)
T ss_pred EecCCCCCCccCCCHH-------HHHHHHHHHHHHHhhCccHhhhhhhHHhcCCC-eeEEEEeCCCCCccceeEEEEEEe
Confidence 4566666555554443 45566666666666666666666665555444 445554 44445567889999999
Q ss_pred cCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec------------
Q 009378 274 HVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS------------ 341 (536)
Q Consensus 274 ~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~------------ 341 (536)
.+++|||||++.|++.. .++|..+....+..++.|.+.|.|..+..-.+.+
T Consensus 141 NVDAGKSTLLGVLTHge-----------------LDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~ 203 (641)
T KOG0463|consen 141 NVDAGKSTLLGVLTHGE-----------------LDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDP 203 (641)
T ss_pred cccCCcceeEeeeeecc-----------------cccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCC
Confidence 99999999999998532 1223333344556667777777776544332211
Q ss_pred -------------CCeEEEEEeCCCcccchhhHhhhccc--CCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCC
Q 009378 342 -------------KNYHVVVLDSPGHKDFVPNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (536)
Q Consensus 342 -------------~~~~i~LIDTPGh~df~~~~~~~l~~--aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp 406 (536)
....++|||.+||+.|++.+..++.. .|+.+|+|.++.| +.++++||+.++..+.+|
T Consensus 204 Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--------IiGmTKEHLgLALaL~VP 275 (641)
T KOG0463|consen 204 HGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--------IIGMTKEHLGLALALHVP 275 (641)
T ss_pred CCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--------ceeccHHhhhhhhhhcCc
Confidence 12568999999999999999999866 9999999999998 568999999999999999
Q ss_pred cEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCC---------------------CccEEEEEcccCCCcccCCCC
Q 009378 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA---------------------SLTWIPLSALENQNLVTAPDD 465 (536)
Q Consensus 407 ~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~---------------------~i~vipvSA~~GenI~e~~~~ 465 (536)
++||++|+|++ ....+++..+.|.+++++.|+..- -+|+|.+|..+|+|+.
T Consensus 276 -VfvVVTKIDMC--PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~----- 347 (641)
T KOG0463|consen 276 -VFVVVTKIDMC--PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP----- 347 (641)
T ss_pred -EEEEEEeeccC--cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-----
Confidence 99999999999 457888889999999998877542 2388999999999985
Q ss_pred cccccccchhhHHHHHHhcCCCCCC--CCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009378 466 GRLLSWYKGPCLLDAIDSLRPPPRE--FSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 466 ~~~~~Wy~g~tLle~L~~l~~~~~~--~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
||..+.++.++.+. .+.|..|+|+|+|-++ +|+| ++|++.+|+|+.+|.++++|...+
T Consensus 348 -----------LLkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTv-vSGT~L~GtIrLND~LlLGPd~~G 408 (641)
T KOG0463|consen 348 -----------LLKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTV-VSGTLLSGTIRLNDILLLGPDSNG 408 (641)
T ss_pred -----------HHHHHHhhcCcccccccCCCcceeecceEecCCcceE-eecceeeeeEEeccEEEecCCCCC
Confidence 88888887776554 4789999999999999 9999 899999999999999999998643
No 39
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.9e-27 Score=238.13 Aligned_cols=214 Identities=32% Similarity=0.453 Sum_probs=183.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (536)
+..+||+++||+++|||||+.+|.+ .-++.+.+|..+|+|+..++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG----------------------------vwT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG----------------------------VWTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc----------------------------eeeechhHHHhcCcEEEeccccCceEe
Confidence 4679999999999999999999984 2357778888999999877664211
Q ss_pred ------------------------CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHH
Q 009378 342 ------------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (536)
Q Consensus 342 ------------------------~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l 397 (536)
--+.+.|+|+|||+.+...|++++...|++||||+|++.. .++|++||+
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-------PQPQT~EHl 132 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTREHL 132 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-------CCCchHHHH
Confidence 0156889999999999999999999999999999999863 689999999
Q ss_pred HHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhH
Q 009378 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 477 (536)
Q Consensus 398 ~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tL 477 (536)
-.+.-++++++|||-||+|++ +.++..+-.++++.|++..-. ++.|+||+||..+.||+ .|
T Consensus 133 ~AleIigik~iiIvQNKIDlV--~~E~AlE~y~qIk~FvkGt~A--e~aPIIPiSA~~~~NID---------------al 193 (415)
T COG5257 133 MALEIIGIKNIIIVQNKIDLV--SRERALENYEQIKEFVKGTVA--ENAPIIPISAQHKANID---------------AL 193 (415)
T ss_pred HHHhhhccceEEEEeccccee--cHHHHHHHHHHHHHHhccccc--CCCceeeehhhhccCHH---------------HH
Confidence 999999999999999999999 556655666777888876554 45588999999999997 49
Q ss_pred HHHH-HhcCCCCCCCCCCeeEEEEEEEEeC---------CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 478 LDAI-DSLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 478 le~L-~~l~~~~~~~~~P~~~~I~d~~~~~---------~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
+++| +.++.|.++..+|.+|.|...|.++ .|.| +.|.+.+|.|+.||.|-+-|.
T Consensus 194 ~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGV-iGGsl~~G~l~vGDEIEIrPG 257 (415)
T COG5257 194 IEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGV-IGGSLVQGVLRVGDEIEIRPG 257 (415)
T ss_pred HHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCce-ecceeeeeeEecCCeEEecCC
Confidence 9999 5689999999999999999988754 5778 799999999999999999986
No 40
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.95 E-value=2e-27 Score=227.51 Aligned_cols=182 Identities=38% Similarity=0.633 Sum_probs=153.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee--c
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--S 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~ 341 (536)
++.++|+|+|++++|||||+++|++..+.+....... .....++....|+.+++|+......+. .
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-------------TKNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-------------HHHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccc-------------cccccccccchhhhcccccccccccccccc
Confidence 3578999999999999999999998777665543211 002246778889999999999999888 8
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
....++|||||||.+|...+..++..+|++|||||+..| +..++.+++.++..+++| +|||+||+|+.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g--------~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG--------IQPQTEEHLKILRELGIP-IIVVLNKMDLI--- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB--------STHHHHHHHHHHHHTT-S-EEEEEETCTSS---
T ss_pred cccceeecccccccceeecccceecccccceeeeecccc--------cccccccccccccccccc-eEEeeeeccch---
Confidence 999999999999999999999999999999999999987 678999999999999999 99999999998
Q ss_pred hhHHHHHHHHHH-HHHHHcCCCC-CCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcC
Q 009378 422 KDRFDSIKVQLG-TFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR 485 (536)
Q Consensus 422 ~e~~eei~~~L~-~~l~~~g~~~-~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~ 485 (536)
..+++++.+++. .+++..++.. ..++++|+||++|.|+.+ |+++|....
T Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~---------------Ll~~l~~~~ 186 (188)
T PF00009_consen 136 EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDE---------------LLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHH---------------HHHHHHHHS
T ss_pred hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHH---------------HHHHHHHhC
Confidence 456666777777 6668888765 478999999999999985 999986543
No 41
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.95 E-value=1.9e-26 Score=255.52 Aligned_cols=208 Identities=26% Similarity=0.331 Sum_probs=162.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..++++|+|+||+|+|||||+++|.+.... ....+|+|.+.....+.+.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-------------------------------~~e~~GIT~~ig~~~v~~~ 132 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVA-------------------------------QGEAGGITQHIGAYHVENE 132 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-------------------------------cccCCceeecceEEEEEEC
Confidence 356789999999999999999999842111 1112578877777777665
Q ss_pred Ce-EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 343 NY-HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 343 ~~-~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
+. .++|||||||++|...+.+++..+|++|||||+..+ .+.++.+++.++...++| +|||+||+|+....
T Consensus 133 ~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg--------v~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~ 203 (587)
T TIGR00487 133 DGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG--------VMPQTIEAISHAKAANVP-IIVAINKIDKPEAN 203 (587)
T ss_pred CCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcccccCC
Confidence 44 899999999999999999999999999999999987 568999999999889998 99999999997533
Q ss_pred hhHHHHHHHHHHH---HHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh---cCCCCCCCCCCe
Q 009378 422 KDRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPL 495 (536)
Q Consensus 422 ~e~~eei~~~L~~---~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~---l~~~~~~~~~P~ 495 (536)
.+. +.+.+.. ....++ ..++++|+||++|+|+.+ |++.|.. +.........|+
T Consensus 204 ~e~---v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~e---------------Ll~~I~~~~~~~~l~~~~~~~~ 262 (587)
T TIGR00487 204 PDR---VKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDE---------------LLDMILLQSEVEELKANPNGQA 262 (587)
T ss_pred HHH---HHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHH---------------HHHhhhhhhhhccccCCCCCCc
Confidence 322 3333322 111222 135789999999999986 6666522 233334556899
Q ss_pred eEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 496 ~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
++.|.+++..+ .|.+ ++|+|.+|+|++||.|+++|.
T Consensus 263 ~~~V~ev~~~~g~G~v-~~~~V~~GtL~~Gd~iv~~~~ 299 (587)
T TIGR00487 263 SGVVIEAQLDKGRGPV-ATVLVQSGTLRVGDIVVVGAA 299 (587)
T ss_pred eeEEEEEEEeCCCcEE-EEEEEEeCEEeCCCEEEECCC
Confidence 99999999988 9998 899999999999999999885
No 42
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.94 E-value=3.9e-26 Score=258.89 Aligned_cols=208 Identities=27% Similarity=0.347 Sum_probs=164.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..++++|+|+||+|+|||||+++|.+... .....+|+|..+....+.+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-------------------------------~~~e~~GIT~~iga~~v~~~ 335 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV-------------------------------AAGEAGGITQHIGAYQVETN 335 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-------------------------------cccccCceeeeccEEEEEEC
Confidence 46889999999999999999999973211 01113678888887788888
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..|+|||||||.+|...+.+++..+|++|||||+..| .+.++.+++.++...++| +|||+||+|+..++.
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG--------v~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~~ 406 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG--------VMPQTIEAINHAKAAGVP-IIVAINKIDKPGANP 406 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCC--------CCHhHHHHHHHHHhcCCc-EEEEEECccccccCH
Confidence 89999999999999999999999999999999999987 578999999999999998 999999999975433
Q ss_pred hHHHHHHHHHHH---HHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh---cCCCCCCCCCCee
Q 009378 423 DRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLL 496 (536)
Q Consensus 423 e~~eei~~~L~~---~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~---l~~~~~~~~~P~~ 496 (536)
+. +..++.. +...++ ..+++|++||++|+||.+ |+++|.. +.........|++
T Consensus 407 e~---V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~e---------------Lle~I~~~~e~~~l~~~~~~~~~ 465 (787)
T PRK05306 407 DR---VKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDE---------------LLEAILLQAEVLELKANPDRPAR 465 (787)
T ss_pred HH---HHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchH---------------HHHhhhhhhhhhhcccCCCCCcE
Confidence 22 3333322 222222 236899999999999986 5555532 2223445678999
Q ss_pred EEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 497 ~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
+.|.+++..+ .|.+ ++|+|.+|+|++||.|+++|.
T Consensus 466 g~V~es~~dkg~G~v-~~v~V~sGtLk~Gd~vv~g~~ 501 (787)
T PRK05306 466 GTVIEAKLDKGRGPV-ATVLVQNGTLKVGDIVVAGTT 501 (787)
T ss_pred EEEEEEEEcCCCeEE-EEEEEecCeEecCCEEEECCc
Confidence 9999999988 9998 899999999999999998753
No 43
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.2e-25 Score=239.73 Aligned_cols=206 Identities=26% Similarity=0.340 Sum_probs=168.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+++.|.||||+++|||||+..|-...... .-..|||..++...+...
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~-------------------------------~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA-------------------------------GEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc-------------------------------ccCCceeeEeeeEEEEecc
Confidence 467789999999999999999997432221 123789999988888873
Q ss_pred --CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 343 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 --~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
...|+|||||||+.|..++.++..-+|++||||++.+| +++||.|.+.+++..++| +||++||+|+...
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG--------v~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~ 122 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG--------VMPQTIEAINHAKAAGVP-IVVAINKIDKPEA 122 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC--------cchhHHHHHHHHHHCCCC-EEEEEecccCCCC
Confidence 57999999999999999999999999999999999988 799999999999999999 9999999999965
Q ss_pred chhHHHHHHHHHHHHHHHcCCCC----CCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHH---hcCCCCCCCCC
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKD----ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID---SLRPPPREFSK 493 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~----~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~---~l~~~~~~~~~ 493 (536)
++.+ +..++.. .|+.. ..+.|+|+||++|+|+.+ ||++|. ....-....+.
T Consensus 123 np~~---v~~el~~----~gl~~E~~gg~v~~VpvSA~tg~Gi~e---------------LL~~ill~aev~elka~~~~ 180 (509)
T COG0532 123 NPDK---VKQELQE----YGLVPEEWGGDVIFVPVSAKTGEGIDE---------------LLELILLLAEVLELKANPEG 180 (509)
T ss_pred CHHH---HHHHHHH----cCCCHhhcCCceEEEEeeccCCCCHHH---------------HHHHHHHHHHHHhhhcCCCC
Confidence 5544 3333333 23332 236899999999999986 777762 22333445578
Q ss_pred CeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 494 PLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 494 P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
+.+-.|.++...+ .|.+ ++..|..|+|++||.|.++..
T Consensus 181 ~a~gtviE~~~dkG~G~v-atviv~~GtL~~GD~iv~g~~ 219 (509)
T COG0532 181 PARGTVIEVKLDKGLGPV-ATVIVQDGTLKKGDIIVAGGE 219 (509)
T ss_pred cceEEEEEEEeccCCCce-EEEEEecCeEecCCEEEEccC
Confidence 8999999999988 9998 799999999999999998764
No 44
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.94 E-value=2.3e-25 Score=247.37 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=158.8
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe---
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--- 339 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~--- 339 (536)
..+++.|+|+||+|+|||||+++|.+....... ..++|.+++...+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~-------------------------------~g~itq~ig~~~~~~~ 51 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE-------------------------------AGGITQHIGATEVPID 51 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCC-------------------------------CCceEEeeceeecccc
Confidence 346778999999999999999999754211100 0112211111111
Q ss_pred ---------------ecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC
Q 009378 340 ---------------DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 404 (536)
Q Consensus 340 ---------------~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~ 404 (536)
...-..++|||||||++|...+..++..+|++|||||++.| +..++.+++.++...+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g--------~~~qt~e~i~~~~~~~ 123 (586)
T PRK04004 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG--------FQPQTIEAINILKRRK 123 (586)
T ss_pred ccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC--------CCHhHHHHHHHHHHcC
Confidence 01111379999999999999998899999999999999987 5678999999998889
Q ss_pred CCcEEEEEeccccc-ccc------------------hhHHHHHHHHHHHHHHHcCCCC----------CCccEEEEEccc
Q 009378 405 VDQLIVAVNKMDAV-QYS------------------KDRFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALE 455 (536)
Q Consensus 405 vp~vIVVINKiDl~-~~~------------------~e~~eei~~~L~~~l~~~g~~~----------~~i~vipvSA~~ 455 (536)
+| +|+|+||+|+. .|. ...|++...++..+|...|+.. ..++++|+||++
T Consensus 124 vp-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 124 TP-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred CC-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 98 99999999985 332 2234444455556666666643 357899999999
Q ss_pred CCCcccCCCCcccccccchhhHHHHHH----h-cC-CCCCCCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEE
Q 009378 456 NQNLVTAPDDGRLLSWYKGPCLLDAID----S-LR-PPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVC 528 (536)
Q Consensus 456 GenI~e~~~~~~~~~Wy~g~tLle~L~----~-l~-~~~~~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~ 528 (536)
|+|+.+ |++.|. . ++ ......+.|++++|.+++..+ .|++ ++|+|.+|+|++||.|+
T Consensus 203 GeGi~d---------------Ll~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v-~~~~v~~GtL~~Gd~vv 266 (586)
T PRK04004 203 GEGIPD---------------LLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTT-IDVILYDGTLRKGDTIV 266 (586)
T ss_pred CCChHH---------------HHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceE-EEEEEEcCEEECCCEEE
Confidence 999986 444442 1 22 223456789999999999988 9998 89999999999999999
Q ss_pred EecCC
Q 009378 529 NFLTR 533 (536)
Q Consensus 529 v~p~~ 533 (536)
++|..
T Consensus 267 ~~~~~ 271 (586)
T PRK04004 267 VGGKD 271 (586)
T ss_pred ECcCC
Confidence 99874
No 45
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.93 E-value=4.1e-25 Score=244.70 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=153.1
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee----
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---- 340 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~---- 340 (536)
+++.|+|+||+|+|||||+++|++...... ...|+|.++....+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~-------------------------------e~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKR-------------------------------EAGGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccc-------------------------------cCCceecccCeeEeeeccc
Confidence 456799999999999999999986422110 011222221111111
Q ss_pred --------------cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCC
Q 009378 341 --------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (536)
Q Consensus 341 --------------~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp 406 (536)
.....++|||||||+.|...+..+++.+|++|||+|++.+ +..++.+++.+++..++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g--------~~~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYKTP 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC--------CCHhHHHHHHHHHHcCCC
Confidence 1123489999999999999999999999999999999987 567888999999888988
Q ss_pred cEEEEEecccccc-cchh------------------HHHHHHHHHHHHHHHcCCCC----------CCccEEEEEcccCC
Q 009378 407 QLIVAVNKMDAVQ-YSKD------------------RFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALENQ 457 (536)
Q Consensus 407 ~vIVVINKiDl~~-~~~e------------------~~eei~~~L~~~l~~~g~~~----------~~i~vipvSA~~Ge 457 (536)
+|||+||+|+.. |... .+++....+...+...|+.. ..++++|+||++|+
T Consensus 124 -iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 -FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred -EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 999999999963 2110 01111111222344445432 25789999999999
Q ss_pred CcccCCCCcccccccchhhHHHHHH----h-cC-CCCCCCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEe
Q 009378 458 NLVTAPDDGRLLSWYKGPCLLDAID----S-LR-PPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNF 530 (536)
Q Consensus 458 nI~e~~~~~~~~~Wy~g~tLle~L~----~-l~-~~~~~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~ 530 (536)
|+.+ |++.|. . ++ ......++|++++|.+++... .|++ ++|+|.+|+|++||.|+++
T Consensus 203 Gide---------------Ll~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v-~t~~v~~G~l~~GD~iv~~ 266 (590)
T TIGR00491 203 GIPE---------------LLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMT-IDAVIYDGILRKGDTIAMA 266 (590)
T ss_pred ChhH---------------HHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceE-EEEEEEcCEEeCCCEEEEc
Confidence 9986 444442 1 21 123356789999999999998 9998 8999999999999999999
Q ss_pred cCC
Q 009378 531 LTR 533 (536)
Q Consensus 531 p~~ 533 (536)
|..
T Consensus 267 ~~~ 269 (590)
T TIGR00491 267 GSD 269 (590)
T ss_pred cCC
Confidence 974
No 46
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9.1e-25 Score=220.22 Aligned_cols=215 Identities=29% Similarity=0.445 Sum_probs=181.3
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec----
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---- 341 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---- 341 (536)
.+||+|+||+++|||||..+|... ..+...|.++..+++|+|.+.++..+..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~------------------------~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa 62 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL------------------------GSTAAFDKHPQSTERGITLDLGFSTMTVLSPA 62 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh------------------------ccchhhccCCcccccceeEeecceeeeccccc
Confidence 489999999999999999999721 1123457778888899999988766532
Q ss_pred -----CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 342 -----KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 342 -----~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
+..+++|+|+|||...+...+.++.-.|+.|+|||+..| .+.|+.|++-+...+-.+ +|||+||+|
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG--------~QtQtAEcLiig~~~c~k-lvvvinkid 133 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG--------KQTQTAECLIIGELLCKK-LVVVINKID 133 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc--------cccccchhhhhhhhhccc-eEEEEeccc
Confidence 457789999999999999999999999999999999988 578999998877766655 899999999
Q ss_pred ccccc--hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccC----CCcccCCCCcccccccchhhHHHHH-HhcCCCCC
Q 009378 417 AVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN----QNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR 489 (536)
Q Consensus 417 l~~~~--~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~G----enI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~ 489 (536)
..... ...+++....++.-|+..+|.. +.|++++||+.| ++|.+ |.++| .++-.|.|
T Consensus 134 ~lpE~qr~ski~k~~kk~~KtLe~t~f~g-~~PI~~vsa~~G~~~~~~i~e---------------L~e~l~s~if~P~R 197 (522)
T KOG0461|consen 134 VLPENQRASKIEKSAKKVRKTLESTGFDG-NSPIVEVSAADGYFKEEMIQE---------------LKEALESRIFEPKR 197 (522)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhcCcCC-CCceeEEecCCCccchhHHHH---------------HHHHHHHhhcCCCc
Confidence 87532 3557888899999999999854 578999999999 55543 88888 45788999
Q ss_pred CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEe
Q 009378 490 EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNF 530 (536)
Q Consensus 490 ~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~ 530 (536)
+.+.||.|.|+..|.++ +|+| .+|+|.+|.|+.|+.|-+-
T Consensus 198 d~~gpflm~vDHCF~IKGQGTV-~TGTvl~G~~~ln~~iE~P 238 (522)
T KOG0461|consen 198 DEEGPFLMAVDHCFAIKGQGTV-LTGTVLRGVLRLNTEIEFP 238 (522)
T ss_pred CCCCCeEEEeeeeEEeccCceE-EeeeEEEeEEecCcEEeec
Confidence 99999999999999999 9999 8999999999999988763
No 47
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.93 E-value=6.7e-25 Score=246.93 Aligned_cols=208 Identities=29% Similarity=0.349 Sum_probs=158.6
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (536)
..+.++|+|+||+|+|||||+++|++..... ...+|+|..+....+.+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-------------------------------~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-------------------------------KEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc-------------------------------ccCCccccccceEEEEEE
Confidence 3577899999999999999999998432211 12255665544433332
Q ss_pred ---CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 342 ---~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.+..|+|||||||+.|...+..++..+|++|||||+..| .+.++.+++..+...++| +|||+||+|+.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG--------v~~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG--------VKPQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC--------CChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 358899999999999999999999999999999999987 567899999999999998 99999999997
Q ss_pred ccchhHHHHHHHHHHHH---HHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhc---CCCCCCCC
Q 009378 419 QYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL---RPPPREFS 492 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~---l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l---~~~~~~~~ 492 (536)
... ++++.+.+..+ ...++ ..++++++||++|+||.+ |++.|..+ ........
T Consensus 361 ~~~---~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIde---------------Lle~I~~l~e~~~lk~~~~ 419 (742)
T CHL00189 361 NAN---TERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDK---------------LLETILLLAEIEDLKADPT 419 (742)
T ss_pred ccC---HHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHH---------------HHHhhhhhhhhhcccCCCC
Confidence 532 23334443322 22222 246899999999999986 66666432 22233446
Q ss_pred CCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 493 KPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 493 ~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
.|+...|.++...+ .|.+ ++|+|.+|+|++||.|+++|.
T Consensus 420 ~~~~g~V~e~~iD~~~G~V-~~~~V~sGtLr~GD~vv~g~~ 459 (742)
T CHL00189 420 QLAQGIILEAHLDKTKGPV-ATILVQNGTLHIGDIIVIGTS 459 (742)
T ss_pred CCceEEEEEEEEcCCCceE-EEEEEEcCEEecCCEEEECCc
Confidence 78888899988877 9998 899999999999999998873
No 48
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.92 E-value=1.8e-24 Score=246.54 Aligned_cols=247 Identities=28% Similarity=0.352 Sum_probs=181.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (536)
..+.+||+|+||+++|||||+++|++..+.+.... .|. .+.+|....|+.+|+|+......+.+
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~ 81 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AGE-----QLALDFDEEEQARGITIKAANVSMVHE 81 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cCc-----ceecCccHHHHHhhhhhhccceEEEEE
Confidence 35678999999999999999999998887765421 111 45689999999999999877655443
Q ss_pred ---CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 342 ---~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.++.++|||||||.+|...+..+++.+|++|+|||+..| +..+++.++.++...++| +||++||+|+.
T Consensus 82 ~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g--------~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 82 YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG--------VMPQTETVLRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred ecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC--------CCccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 578899999999999999999999999999999999987 567899999988888888 69999999986
Q ss_pred ccc--------hhHHHHHHHHHHHHHHHcC---------CCCCCccEEEEEcccCCCcccCC------------------
Q 009378 419 QYS--------KDRFDSIKVQLGTFLRSCG---------FKDASLTWIPLSALENQNLVTAP------------------ 463 (536)
Q Consensus 419 ~~~--------~e~~eei~~~L~~~l~~~g---------~~~~~i~vipvSA~~GenI~e~~------------------ 463 (536)
..+ ..++.++..++..++..+. +.+..-.+++.||+.+.++....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 232 (731)
T PRK07560 153 IKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKG 232 (731)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcC
Confidence 321 2334444444444444321 22222346788999988775100
Q ss_pred CCcccccccch-hhHHHHHHh-cCCCCC-------------------------CCCCCeeEEEEEEEEeC-CCeEEEEEE
Q 009378 464 DDGRLLSWYKG-PCLLDAIDS-LRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACGK 515 (536)
Q Consensus 464 ~~~~~~~Wy~g-~tLle~L~~-l~~~~~-------------------------~~~~P~~~~I~d~~~~~-~G~v~v~G~ 515 (536)
....+..|+-- ..||++|.. +|.|.. +.+.|+.+.|++++..+ .|.+ +.||
T Consensus 233 ~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~v-a~~R 311 (731)
T PRK07560 233 KQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEV-ATGR 311 (731)
T ss_pred CHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeE-EEEE
Confidence 00001111110 158888744 565531 22468999999999888 8988 7999
Q ss_pred EEeeEEecCCEEEEecCCC
Q 009378 516 LEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 516 V~sG~Lk~gd~v~v~p~~~ 534 (536)
|++|+|++||.|++.+.+.
T Consensus 312 V~sGtL~~Gd~v~~~~~~~ 330 (731)
T PRK07560 312 VFSGTLRKGQEVYLVGAKK 330 (731)
T ss_pred EEEeEEcCCCEEEEcCCCC
Confidence 9999999999999887653
No 49
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.7e-24 Score=227.62 Aligned_cols=209 Identities=26% Similarity=0.306 Sum_probs=166.4
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (536)
..+++.|-||||+++|||||+.+|-+...+... ..|||..++.+....
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E-------------------------------~GGITQhIGAF~V~~p 198 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE-------------------------------AGGITQHIGAFTVTLP 198 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhh-------------------------------cCCccceeceEEEecC
Confidence 357889999999999999999999754332211 267888777665443
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++|+|||||..|..++.+++..+|.+||||.|.+| +++||.|.+.+++..++| +||++||+|+...+
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG--------VmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG--------VMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN 269 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC--------ccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC
Confidence 568999999999999999999999999999999999988 799999999999999999 99999999998766
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHH---hcCCCCCCCCCCeeEE
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID---SLRPPPREFSKPLLMP 498 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~---~l~~~~~~~~~P~~~~ 498 (536)
+++..+-.-...-.++.+| ..+++||+||++|+|+.. |.++|. .+.........|+...
T Consensus 270 pekv~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~---------------L~eaill~Ae~mdLkA~p~g~~eg~ 331 (683)
T KOG1145|consen 270 PEKVKRELLSQGIVVEDLG---GDVQVIPISALTGENLDL---------------LEEAILLLAEVMDLKADPKGPAEGW 331 (683)
T ss_pred HHHHHHHHHHcCccHHHcC---CceeEEEeecccCCChHH---------------HHHHHHHHHHHhhcccCCCCCceEE
Confidence 6543221112222334444 367899999999999975 666652 2333344567899999
Q ss_pred EEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEe
Q 009378 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNF 530 (536)
Q Consensus 499 I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~ 530 (536)
|.+....+ +|.+ ++..|..|+|++|+.++.+
T Consensus 332 VIES~vdkg~G~~-aT~iVkrGTLkKG~vlV~G 363 (683)
T KOG1145|consen 332 VIESSVDKGRGPV-ATVIVKRGTLKKGSVLVAG 363 (683)
T ss_pred EEEeeecCCccce-eEEEEeccccccccEEEEe
Confidence 99999888 9999 7999999999999987765
No 50
>PRK12739 elongation factor G; Reviewed
Probab=99.92 E-value=2.9e-24 Score=243.61 Aligned_cols=227 Identities=28% Similarity=0.348 Sum_probs=173.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.+||+|+||+|+|||||+++|++..+.+.... ....+ .+.+|....|+.+|+|++.....+.+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~---------~v~~~----~~~~D~~~~E~~rgiti~~~~~~~~~~~ 72 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIG---------EVHDG----AATMDWMEQEQERGITITSAATTCFWKG 72 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccc---------cccCC----ccccCCChhHhhcCCCccceeEEEEECC
Confidence 4678999999999999999999998766542210 00111 4678999999999999999999999999
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
+.++|||||||.+|...+..+++.+|++|||||+..| +..+++.++.++...++| +||++||+|+....
T Consensus 73 ~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g--------~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-- 141 (691)
T PRK12739 73 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG--------VEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-- 141 (691)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999987 567899999999999998 79999999998532
Q ss_pred HHHHHHHHHHHHHHHcC---------------------------------------------------------------
Q 009378 424 RFDSIKVQLGTFLRSCG--------------------------------------------------------------- 440 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g--------------------------------------------------------------- 440 (536)
+..+.+++...+....
T Consensus 142 -~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~ 220 (691)
T PRK12739 142 -FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEV 220 (691)
T ss_pred -HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 2333334433332100
Q ss_pred ---------------------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCC---
Q 009378 441 ---------------------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPR--- 489 (536)
Q Consensus 441 ---------------------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~--- 489 (536)
....-+|++..||+++.|+. .||++|.. +|.|..
T Consensus 221 dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~---------------~LLd~I~~~lPsP~~~~~ 285 (691)
T PRK12739 221 DEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDVPA 285 (691)
T ss_pred CHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHH---------------HHHHHHHHHCCChhhccc
Confidence 00011234444555555554 49999854 555531
Q ss_pred ----------------CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEec
Q 009378 490 ----------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFL 531 (536)
Q Consensus 490 ----------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p 531 (536)
+.+.||.+.|++++..+ .|.+ +.+||++|+|++||.|+..-
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i-~~~RV~sGtL~~g~~v~~~~ 343 (691)
T PRK12739 286 IKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRL-TFFRVYSGVLESGSYVLNTT 343 (691)
T ss_pred cccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeE-EEEEEeeeEEcCCCEEEeCC
Confidence 23568999999999988 7988 78999999999999997543
No 51
>PRK00007 elongation factor G; Reviewed
Probab=99.92 E-value=6.1e-24 Score=241.03 Aligned_cols=227 Identities=27% Similarity=0.314 Sum_probs=172.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.+||+|+||+|+|||||+++|++..+.+.... .... -.+.+|....|+.+|+|++.....+.+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g---------~v~~----~~~~~D~~~~E~~rg~ti~~~~~~~~~~ 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIG---------EVHD----GAATMDWMEQEQERGITITSAATTCFWK 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccc---------cccC----CcccCCCCHHHHhCCCCEeccEEEEEEC
Confidence 34578999999999999999999998776553210 0001 1467899999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
++.++|||||||.+|...+..+++.+|++|||||+..| +..|++.++.++...++| +||++||+|+....
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~- 143 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD- 143 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC-
Confidence 99999999999999999999999999999999999988 678999999999999998 78999999998532
Q ss_pred hHHHHHHHHHHHHHHHc---------------------------------------------------------------
Q 009378 423 DRFDSIKVQLGTFLRSC--------------------------------------------------------------- 439 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~--------------------------------------------------------------- 439 (536)
+..+.++++..+...
T Consensus 144 --~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 221 (693)
T PRK00007 144 --FYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAE 221 (693)
T ss_pred --HHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHc
Confidence 222333333322110
Q ss_pred ---------------------------CCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCC--
Q 009378 440 ---------------------------GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPR-- 489 (536)
Q Consensus 440 ---------------------------g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~-- 489 (536)
......+|++..||+++.|+. .||++|.. +|.|..
T Consensus 222 ~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~---------------~LLd~I~~~lPsP~~~~ 286 (693)
T PRK00007 222 ADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDVP 286 (693)
T ss_pred cCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHH---------------HHHHHHHHHCCChhhcc
Confidence 000112233444555555554 49999844 565531
Q ss_pred ------------------CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEe
Q 009378 490 ------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNF 530 (536)
Q Consensus 490 ------------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~ 530 (536)
+.+.||.+.|+.++..+ .|.+ +.+||++|+|++||+|+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i-a~~RV~sGtl~~g~~v~~~ 345 (693)
T PRK00007 287 AIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKL-TFFRVYSGVLESGSYVLNS 345 (693)
T ss_pred cccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcE-EEEEEeeeEEcCCCEEEeC
Confidence 12568999999999888 8987 7999999999999999754
No 52
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.92 E-value=1.4e-23 Score=238.11 Aligned_cols=228 Identities=29% Similarity=0.331 Sum_probs=171.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.+||+|+||+|+|||||+++|++..+.+.... + . ....+.+|....|+.+|+|++.....+.+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~--~-------~----~~g~~~~D~~~~e~~rgiti~~~~~~~~~~ 73 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIG--E-------V----HDGAATMDWMEQEKERGITITSAATTVFWK 73 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccc--c-------c----cCCccccCCCHHHHhcCCCEecceEEEEEC
Confidence 34578999999999999999999998766552210 0 0 012367888999999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..++|||||||.+|...+..+++.+|++|||||+..| ...++..++.++...++| +|||+||+|+....
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~- 143 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG--------VQPQSETVWRQANRYEVP-RIAFVNKMDKTGAN- 143 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC--------CChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC-
Confidence 99999999999999999999999999999999999987 456788888888889998 88999999998533
Q ss_pred hHHHHHHHHHHHHHHHcCC-------------------------------------------------------------
Q 009378 423 DRFDSIKVQLGTFLRSCGF------------------------------------------------------------- 441 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~------------------------------------------------------------- 441 (536)
++.+.+++...+....+
T Consensus 144 --~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~ 221 (689)
T TIGR00484 144 --FLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEF 221 (689)
T ss_pred --HHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 22233333333211100
Q ss_pred ----------------------------CCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHH-hcCCCCC---
Q 009378 442 ----------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR--- 489 (536)
Q Consensus 442 ----------------------------~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~-~l~~~~~--- 489 (536)
....+|++..||+++.|+. .||++|. .+|.|..
T Consensus 222 dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~---------------~LLd~I~~~lPsP~~~~~ 286 (689)
T TIGR00484 222 DEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQ---------------LLLDAVVDYLPSPTDVPA 286 (689)
T ss_pred CHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHH---------------HHHHHHHHHCCCchhccc
Confidence 0111233344455555543 5999984 4555531
Q ss_pred ----------------CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEec
Q 009378 490 ----------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFL 531 (536)
Q Consensus 490 ----------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p 531 (536)
+.+.||.+.|+++...+ .|.+ +.+||++|+|+.||+|+..-
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i-~~~RV~sGtL~~g~~v~~~~ 344 (689)
T TIGR00484 287 IKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQL-TFVRVYSGVLKSGSYVKNSR 344 (689)
T ss_pred ccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeE-EEEEEEEeEEcCCCEEEeCC
Confidence 12568999999999888 8887 79999999999999998643
No 53
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=8.5e-24 Score=214.93 Aligned_cols=272 Identities=22% Similarity=0.292 Sum_probs=210.2
Q ss_pred ChhhhhhhcccccccCCcccccccccc-C----ccccCcccccCCCCcCCCcceeEEEEEecCCCCchhhhhhhhhcccc
Q 009378 218 NLTSNMKNMSSTAKSGNSTNVSARKTN-S----HTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (536)
Q Consensus 218 ~~~~~~~~l~~~~~~~~s~~v~v~~~~-~----~~~~~~~~~~~~~~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~ 292 (536)
++.+++..|+.|+...-...+-+++.. . ..+-..+-+..+....+..-.++|+++|..++|||||++.|+..
T Consensus 114 emnaSL~TL~~MA~~lGAs~~vLrek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQg--- 190 (591)
T KOG1143|consen 114 EMNASLRTLRTMAQALGASMVVLREKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQG--- 190 (591)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEeeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeeecc---
Confidence 478899999999887554433333211 1 11223344455555566677899999999999999999999831
Q ss_pred cccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec---------------------CCeEEEEEeC
Q 009378 293 ITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---------------------KNYHVVVLDS 351 (536)
Q Consensus 293 i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---------------------~~~~i~LIDT 351 (536)
..++|.......+..+.+|...|.|..+.+..+.+ ....++|||.
T Consensus 191 --------------eLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDL 256 (591)
T KOG1143|consen 191 --------------ELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDL 256 (591)
T ss_pred --------------cccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEeec
Confidence 22334444455667777788888776655443322 2356999999
Q ss_pred CCcccchhhHhhhccc--CCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHH
Q 009378 352 PGHKDFVPNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (536)
Q Consensus 352 PGh~df~~~~~~~l~~--aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~ 429 (536)
+||..|...++.++.. +|+++|||.|..| +...++||+.++.++++| ++|+++|||++ +..-++.+.
T Consensus 257 AGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--------i~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~--~~~~~~~tv 325 (591)
T KOG1143|consen 257 AGHAKYQKTTIHGLTGYTPHFACLVVSADRG--------ITWTTREHLGLIAALNIP-FFVLVTKMDLV--DRQGLKKTV 325 (591)
T ss_pred ccchhhheeeeeecccCCCceEEEEEEcCCC--------CccccHHHHHHHHHhCCC-eEEEEEeeccc--cchhHHHHH
Confidence 9999999999998877 8999999999998 567899999999999999 99999999999 556677888
Q ss_pred HHHHHHHHHcCCCC---------------------CCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCC
Q 009378 430 VQLGTFLRSCGFKD---------------------ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPP 488 (536)
Q Consensus 430 ~~L~~~l~~~g~~~---------------------~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~ 488 (536)
+++..+++..|+.. .-+|+|.+|..+|+|+. |+..+.+..+|.
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~----------------ll~~fLn~Lsp~ 389 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR----------------LLRTFLNCLSPA 389 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh----------------HHHHHHhhcCCc
Confidence 99999998888753 23488999999999996 777766655553
Q ss_pred CC-------CCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 489 RE-------FSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 489 ~~-------~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
-. ...|..|+|+++|+++ +|+| |.|.+.+|.++.|+.++++|+.-
T Consensus 390 ~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~V-VGG~Ls~G~l~Eg~~~~vGP~~D 442 (591)
T KOG1143|consen 390 GTAEERIQLVQLPAEFQVDEIYNVPHVGQV-VGGMLSEGQLHEGADVLVGPMKD 442 (591)
T ss_pred CChHHHHHHhcCcceeeHhHeecCCccccc-ccceeeeceeccCceeEeecCCC
Confidence 22 3678999999999999 9999 89999999999999999999864
No 54
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.91 E-value=7e-23 Score=224.95 Aligned_cols=236 Identities=23% Similarity=0.299 Sum_probs=174.7
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
+..+.++|+|+||+|+|||||+++|+...+.+..... ..++++... ..+|....|+.+|+++......+++
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~~~~-t~~D~~~~E~~rgisi~~~~~~~~~ 77 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGSQRH-AKSDWMEMEKQRGISITTSVMQFPY 77 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------ecccccccc-ccCCCCHHHHhcCCcEEEEEEEEee
Confidence 3456789999999999999999999977666543210 011222111 3468889999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++|||||||.+|...+..+++.+|++|+|||+..+ +..++..++.+++..++| +|+++||+|+...+
T Consensus 78 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~ 148 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--------VETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD 148 (527)
T ss_pred CCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECccccCCC
Confidence 999999999999999999999999999999999999976 456788888888888887 99999999986433
Q ss_pred hhHHHHHHHHHHHHHHHcC-------------------------------------------------------------
Q 009378 422 KDRFDSIKVQLGTFLRSCG------------------------------------------------------------- 440 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g------------------------------------------------------------- 440 (536)
.. ++.+.++..+....
T Consensus 149 ~~---~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 225 (527)
T TIGR00503 149 PL---ELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQL 225 (527)
T ss_pred HH---HHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHH
Confidence 21 12222222211000
Q ss_pred -------------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCCC---------C
Q 009378 441 -------------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------F 491 (536)
Q Consensus 441 -------------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~~---------~ 491 (536)
.....+|++..||+++.|+.. ||++|.. +|.|... .
T Consensus 226 ~~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~---------------LLd~i~~~~PsP~~~~~~~~~~~~~ 290 (527)
T TIGR00503 226 RDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDH---------------FLDGLLQWAPKPEARQSDTRTVEPT 290 (527)
T ss_pred HHHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHH---------------HHHHHHHHCCCCccccCCceecCCC
Confidence 011234667778888888864 9999855 4545321 2
Q ss_pred CCCeeEEEEEEEE--e-C-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 492 SKPLLMPICDVLK--S-Q-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 492 ~~P~~~~I~d~~~--~-~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
..||...|+.+.. . + +|.+ +..||.+|+|+.|++|+...+++
T Consensus 291 ~~~~~~~VFK~~~~mdp~~~gri-af~RV~sG~l~~g~~v~~~~~~k 336 (527)
T TIGR00503 291 EEKFSGFVFKIQANMDPKHRDRV-AFMRVVSGKYEKGMKLKHVRTGK 336 (527)
T ss_pred CCCeeEEEEEEEeccCcccCceE-EEEEEeeeEEcCCCEEEecCCCC
Confidence 4678888888876 4 4 8988 78999999999999998776553
No 55
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.91 E-value=8.2e-23 Score=224.40 Aligned_cols=238 Identities=26% Similarity=0.338 Sum_probs=175.6
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.++|+|+||+|+|||||+++|++..+.+..... .. ++... -...+|....|+.+|+++......+.+.
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~-------v~-~~~~~-~~~~~D~~~~E~~rgiSi~~~~~~~~~~ 77 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGT-------VK-GRKSG-RHATSDWMEMEKQRGISVTSSVMQFPYR 77 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccce-------ee-ccccC-ccccCCCcHHHHhhCCceeeeeEEEEEC
Confidence 356789999999999999999999977766543210 00 00000 1123577788999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..++|||||||.+|...+..+++.+|++|+|||+..+ +..+++.++.+++..++| +|+++||+|+.....
T Consensus 78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~ 148 (526)
T PRK00741 78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG--------VEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREP 148 (526)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCcccccCH
Confidence 99999999999999999999999999999999999987 456888888888889998 999999999875332
Q ss_pred -hHHHHHHHHHHH-----------------------------------------------------HHH-----------
Q 009378 423 -DRFDSIKVQLGT-----------------------------------------------------FLR----------- 437 (536)
Q Consensus 423 -e~~eei~~~L~~-----------------------------------------------------~l~----------- 437 (536)
+.++++++.+.. ++.
T Consensus 149 ~~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~l 228 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREEL 228 (526)
T ss_pred HHHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHH
Confidence 122333222110 000
Q ss_pred ------------HcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCCC---------CCCCe
Q 009378 438 ------------SCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSKPL 495 (536)
Q Consensus 438 ------------~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~~---------~~~P~ 495 (536)
..-.....+|++..||+++.||.. ||++|.. +|.|... ...+|
T Consensus 229 el~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~---------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~ 293 (526)
T PRK00741 229 ELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQE---------------FLDAFVEWAPAPQPRQTDEREVEPTEEKF 293 (526)
T ss_pred HhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHH---------------HHHHHHHHCCCCCcccccceeecCCCCce
Confidence 000011235789999999999974 9999955 4545321 24578
Q ss_pred eEEEEEEEE---eC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 496 LMPICDVLK---SQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 496 ~~~I~d~~~---~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
...|+.+.. .+ .|.+ +..||.+|+|+.|+.|+...+++
T Consensus 294 ~~~VFK~~~~m~~~~~grl-afvRV~sG~l~~g~~v~~~~~~k 335 (526)
T PRK00741 294 SGFVFKIQANMDPKHRDRI-AFVRVCSGKFEKGMKVRHVRTGK 335 (526)
T ss_pred EEEEEEEEecCCCCcCceE-EEEEEeccEECCCCEEEeccCCc
Confidence 888888873 34 8988 78999999999999998766543
No 56
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.90 E-value=2e-23 Score=205.82 Aligned_cols=190 Identities=28% Similarity=0.381 Sum_probs=147.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC----
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---- 342 (536)
+||+|+||+++|||||+++|+...+.+..+. .+. .+.+|....|+.+|+|+......+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~------------~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL------------AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc------------CCc---eeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 4799999999999999999998777654332 111 356899999999999998765544333
Q ss_pred ------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 343 ------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 343 ------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
+..++|||||||.+|...+..+++.+|++|||||+..| ...++++++..+...++| +|||+||+|
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g--------~~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG--------VCVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 78899999999999999999999999999999999987 467888999888888887 999999999
Q ss_pred ccc--------cchhHHHHHHHHHHHHHHHcCCC-------------CCCccEEEEEcccCCCcccCCCCcccccccchh
Q 009378 417 AVQ--------YSKDRFDSIKVQLGTFLRSCGFK-------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGP 475 (536)
Q Consensus 417 l~~--------~~~e~~eei~~~L~~~l~~~g~~-------------~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~ 475 (536)
+.. +...++.++.+++..++..+.-. +..=.++..||+.|+... +..|-...
T Consensus 137 ~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~-------~~~f~~~~ 209 (222)
T cd01885 137 RLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFT-------IIKFARIY 209 (222)
T ss_pred cchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEec-------cccccchH
Confidence 861 22356777888888877766321 111137889999999874 23444556
Q ss_pred hHHHHH-HhcCCC
Q 009378 476 CLLDAI-DSLRPP 487 (536)
Q Consensus 476 tLle~L-~~l~~~ 487 (536)
+||+.| +++|+|
T Consensus 210 ~~~~~~~~~~~~p 222 (222)
T cd01885 210 AVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHhhCCCC
Confidence 899997 566654
No 57
>PRK13351 elongation factor G; Reviewed
Probab=99.90 E-value=8e-23 Score=232.07 Aligned_cols=229 Identities=29% Similarity=0.400 Sum_probs=174.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.+||+|+|+.|+|||||+++|+...+.+.... ....+ .+.+|....|+.+|+|+......+.+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~---------~v~~~----~~~~d~~~~e~~r~~ti~~~~~~~~~~~ 72 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMG---------EVEDG----TTVTDWMPQEQERGITIESAATSCDWDN 72 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccc---------cccCC----cccCCCCHHHHhcCCCcccceEEEEECC
Confidence 3568999999999999999999997666543221 00011 2356777888999999998888899999
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..++|||||||.+|...+..+++.+|++|||+|+..+ ...++..++..+...++| +|+|+||+|+...+
T Consensus 73 ~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~-- 141 (687)
T PRK13351 73 HRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTG--------VQPQTETVWRQADRYGIP-RLIFINKMDRVGAD-- 141 (687)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999987 455777888888888888 89999999987532
Q ss_pred HHHHHHHHHHHHHHHc----------------------------------------------------------------
Q 009378 424 RFDSIKVQLGTFLRSC---------------------------------------------------------------- 439 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~---------------------------------------------------------------- 439 (536)
+....++++..+...
T Consensus 142 -~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 220 (687)
T PRK13351 142 -LFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEF 220 (687)
T ss_pred -HHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 222222222221110
Q ss_pred ----------C----------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCC---
Q 009378 440 ----------G----------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPR--- 489 (536)
Q Consensus 440 ----------g----------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~--- 489 (536)
+ ....-+|++..||++|.|+.. ||++|.. +|.|..
T Consensus 221 d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~---------------LLd~I~~~lPsP~~~~~ 285 (687)
T PRK13351 221 DDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEP---------------LLDAVVDYLPSPLEVPP 285 (687)
T ss_pred CHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHH---------------HHHHHHHHCCChhhccc
Confidence 0 001134567779999999974 9999854 555532
Q ss_pred ---------------CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 490 ---------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 490 ---------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+.+.|+.+.|++++..+ .|.+ +.+||++|+|++||+|++.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i-~~~RV~sGtl~~g~~v~~~~~~ 344 (687)
T PRK13351 286 PRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKL-TYLRVYSGTLRAGSQLYNGTGG 344 (687)
T ss_pred ccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceE-EEEEEeEEEEcCCCEEEeCCCC
Confidence 23679999999999988 8988 7999999999999999988754
No 58
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=8.7e-23 Score=198.23 Aligned_cols=168 Identities=32% Similarity=0.425 Sum_probs=124.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC----
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---- 342 (536)
++|+|+||.|+|||||+.+|.+. ..+....+..+|+++...+..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~----------------------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV----------------------------WTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----------------------------CCCCCCeeEEcCCceeecccccccccccC
Confidence 58999999999999999999632 1234455556666665554443332
Q ss_pred -----------------------C------eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHH
Q 009378 343 -----------------------N------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT 393 (536)
Q Consensus 343 -----------------------~------~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt 393 (536)
+ ..++|||||||.+|...+..++..+|++|||||+..+. ...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t 125 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC-------PQPQT 125 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC-------CCcch
Confidence 2 78999999999999999999999999999999998641 23466
Q ss_pred HHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccc
Q 009378 394 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK 473 (536)
Q Consensus 394 ~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~ 473 (536)
.+++..+...+++++|||+||+|+.. ...+....+.+..+++.... ..+++|++||++|+|+.+
T Consensus 126 ~~~l~~~~~~~~~~iiivvNK~Dl~~--~~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~------------ 189 (203)
T cd01888 126 SEHLAALEIMGLKHIIIVQNKIDLVK--EEQALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDV------------ 189 (203)
T ss_pred HHHHHHHHHcCCCcEEEEEEchhccC--HHHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHH------------
Confidence 77777777788877999999999973 33444444556666554322 245789999999999985
Q ss_pred hhhHHHHHHh-cCCCC
Q 009378 474 GPCLLDAIDS-LRPPP 488 (536)
Q Consensus 474 g~tLle~L~~-l~~~~ 488 (536)
|++.|.. ++.|.
T Consensus 190 ---L~~~l~~~l~~~~ 202 (203)
T cd01888 190 ---LLEYIVKKIPTPP 202 (203)
T ss_pred ---HHHHHHHhCCCCC
Confidence 8888854 55443
No 59
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.9e-22 Score=224.37 Aligned_cols=233 Identities=30% Similarity=0.420 Sum_probs=177.1
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.+||+|+||.++|||||..+|+...+.+.... ....| +..+|....|++||+|+..+...+.+.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G-------~v~~g------~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG-------EVHDG------AATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc-------cccCC------CccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 45679999999999999999999999888775421 01111 357899999999999999999999999
Q ss_pred C-eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 343 ~-~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
+ +.|+|||||||.+|...+.++++.+|++|+||||..| ++.|+...++++...++| .|+++||||+...+
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveG--------V~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~ 144 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEG--------VEPQTETVWRQADKYGVP-RILFVNKMDRLGAD 144 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCC--------eeecHHHHHHHHhhcCCC-eEEEEECccccccC
Confidence 5 9999999999999999999999999999999999998 689999999999999999 79999999987543
Q ss_pred hhH-HHHHHHHHHH------------------------------------------------------------------
Q 009378 422 KDR-FDSIKVQLGT------------------------------------------------------------------ 434 (536)
Q Consensus 422 ~e~-~eei~~~L~~------------------------------------------------------------------ 434 (536)
... .+++...+..
T Consensus 145 ~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l 224 (697)
T COG0480 145 FYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEEL 224 (697)
T ss_pred hhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHH
Confidence 111 1111111111
Q ss_pred ---HHHHc--------------CCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCC-------
Q 009378 435 ---FLRSC--------------GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR------- 489 (536)
Q Consensus 435 ---~l~~~--------------g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~------- 489 (536)
++... -.....++++.-||.++.|+. .||+++ +.+|.|..
T Consensus 225 ~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~---------------~lLdav~~~lPsP~e~~~~~g~ 289 (697)
T COG0480 225 MEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDVPPIKGD 289 (697)
T ss_pred HHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHH---------------HHHHHHHHHCCChhhccccccc
Confidence 00000 000112345555666555553 599998 45665511
Q ss_pred -------------CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 490 -------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 490 -------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
..+.||.+.++.+...+ .|.+ ..+||++|+|++|+.|++...+
T Consensus 290 ~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l-~~~RvysGtl~~G~~v~n~~~~ 346 (697)
T COG0480 290 LDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKL-TFVRVYSGTLKSGSEVLNSTKG 346 (697)
T ss_pred CCccccchhcccCCCCCceEEEEEEeEecCCCCeE-EEEEEeccEEcCCCEEEeCCCC
Confidence 23789999999999988 8998 4699999999999988876554
No 60
>PRK12740 elongation factor G; Reviewed
Probab=99.89 E-value=4.1e-22 Score=225.65 Aligned_cols=221 Identities=29% Similarity=0.388 Sum_probs=170.8
Q ss_pred EecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEEEeC
Q 009378 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (536)
Q Consensus 272 vG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~LIDT 351 (536)
+||+|+|||||+++|++..+.+.... ....+ .+.+|....|+.+|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~---------~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG---------EVEDG----TTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc---------cccCC----cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999998877664321 00011 257888899999999999999999999999999999
Q ss_pred CCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHH
Q 009378 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQ 431 (536)
Q Consensus 352 PGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~ 431 (536)
|||.+|...+..++..+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+.... +.++.+.
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~---~~~~~~~ 135 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGG--------VEPQTETVWRQAEKYGVP-RIIFVNKMDRAGAD---FFRVLAQ 135 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCC--------cCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHHHHHH
Confidence 99999999999999999999999999976 346777777888888888 89999999987432 2222222
Q ss_pred HHHHHHH-------------------------------------------------------------------------
Q 009378 432 LGTFLRS------------------------------------------------------------------------- 438 (536)
Q Consensus 432 L~~~l~~------------------------------------------------------------------------- 438 (536)
+...+..
T Consensus 136 l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~ 215 (668)
T PRK12740 136 LQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEG 215 (668)
T ss_pred HHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC
Confidence 2222110
Q ss_pred cC--------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCCCC--------------
Q 009378 439 CG--------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPR-------------- 489 (536)
Q Consensus 439 ~g--------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~~~-------------- 489 (536)
.. ....-+|++..||++|.|+.. ||++|.. +|.|..
T Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~lPsp~~~~~~~~~~~~~~~~ 280 (668)
T PRK12740 216 EELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQR---------------LLDAVVDYLPSPLEVPPVDGEDGEEGAE 280 (668)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH---------------HHHHHHHHCCChhhcccccCCCCccccc
Confidence 00 011234678889999999974 9999854 555531
Q ss_pred ---CCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 490 ---EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 490 ---~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
+.+.|+.+.|++++..+ .|.+ +.+||++|+|++||+|++.+.+
T Consensus 281 ~~~~~~~~l~a~v~k~~~~~~~G~i-~~~RV~sG~L~~g~~v~~~~~~ 327 (668)
T PRK12740 281 LAPDPDGPLVALVFKTMDDPFVGKL-SLVRVYSGTLKKGDTLYNSGTG 327 (668)
T ss_pred cccCCCCCeEEEEEEeeecCCCCcE-EEEEEeeeEEcCCCEEEeCCCC
Confidence 33678999999999988 8988 8999999999999999998764
No 61
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.8e-22 Score=192.24 Aligned_cols=171 Identities=29% Similarity=0.475 Sum_probs=126.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC----
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---- 342 (536)
+||+|+|++|+|||||+++|+...+ .+.++....++.+|+|+......+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 5899999999999999999984311 123455566777888887776655544
Q ss_pred ----------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEE
Q 009378 343 ----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (536)
Q Consensus 343 ----------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVI 412 (536)
+..++|||||||..|...+..++..+|++|+|+|+..+ ...++.+++.++...+.| +|+|+
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~ 127 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKG--------IQTQTAECLVIGEILCKK-LIVVL 127 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEE
Confidence 77899999999999888888888899999999999876 334555555566666776 99999
Q ss_pred ecccccccc--hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHh-cCCC
Q 009378 413 NKMDAVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPP 487 (536)
Q Consensus 413 NKiDl~~~~--~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~-l~~~ 487 (536)
||+|+.... ...++++.+.+...+...++ ..++++++||++|+|+.+ |++.|.. +++|
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~---------------L~~~l~~~~~~~ 188 (192)
T cd01889 128 NKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAE---------------LGKDLNNLIVLP 188 (192)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHH---------------HHHHHHhccccc
Confidence 999997421 12244444544444444444 346899999999999985 9999954 5555
No 62
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=6.2e-22 Score=182.22 Aligned_cols=155 Identities=30% Similarity=0.518 Sum_probs=115.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-CeE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYH 345 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~ 345 (536)
++|+|+|++|+|||||+++|++... +....+..+++|+......+... +..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~----------------------------~~~~~~~~~~~t~~~~~~~~~~~~~~~ 52 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIET----------------------------DRLPEEKKRGITIDLGFAYLDLPSGKR 52 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCccc----------------------------ccchhhhccCceEEeeeEEEEecCCcE
Confidence 3699999999999999999984210 11122334566766666556555 778
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHH
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ 425 (536)
+.||||||+++|...+..+++.+|++|+|+|+..+ +..+..+.+.++...+.+++|+|+||+|+.. ...+
T Consensus 53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~--------~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~--~~~~ 122 (164)
T cd04171 53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG--------IMPQTREHLEILELLGIKRGLVVLTKADLVD--EDWL 122 (164)
T ss_pred EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC--------ccHhHHHHHHHHHHhCCCcEEEEEECccccC--HHHH
Confidence 99999999999988888889999999999999865 3456666666676777755999999999974 2334
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....+++...++..++ ..++++++||++|+|+.+
T Consensus 123 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 123 ELVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred HHHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHH
Confidence 4445566666655433 235789999999999986
No 63
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=2e-22 Score=199.13 Aligned_cols=177 Identities=27% Similarity=0.347 Sum_probs=133.1
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEE-----------
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV----------- 336 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~----------- 336 (536)
+|+|+|+.++|||||+++|+..... .+.......++.+.+|.++|+|..+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~-----------------~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~ 63 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELD-----------------NGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEV 63 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcC-----------------CCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCce
Confidence 4899999999999999999842111 111122233445555555555543222
Q ss_pred -------------EEeecCCeEEEEEeCCCcccchhhHhhhcc--cCCeEEEEeecCCCcccccccchhhHHHHHHHHHH
Q 009378 337 -------------AYFDSKNYHVVVLDSPGHKDFVPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR 401 (536)
Q Consensus 337 -------------~~~~~~~~~i~LIDTPGh~df~~~~~~~l~--~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~ 401 (536)
..++..+..++|+|||||++|...+..++. .+|++|+|||+..+ +..++++++.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~ 135 (224)
T cd04165 64 VNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLAL 135 (224)
T ss_pred ecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHH
Confidence 223345678999999999999999998886 79999999999987 5689999999999
Q ss_pred HcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCC---------------------CCCccEEEEEcccCCCcc
Q 009378 402 SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK---------------------DASLTWIPLSALENQNLV 460 (536)
Q Consensus 402 ~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~---------------------~~~i~vipvSA~~GenI~ 460 (536)
..++| +|+|+||+|+. ....+....+.+..+++..|+. ...+|+|++||++|+|+.
T Consensus 136 ~~~ip-~ivvvNK~D~~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~ 212 (224)
T cd04165 136 ALNIP-VFVVVTKIDLA--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLD 212 (224)
T ss_pred HcCCC-EEEEEECcccc--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHH
Confidence 99998 99999999997 4566777788888887654433 123489999999999998
Q ss_pred cCCCCcccccccchhhHHHHHHhcCCC
Q 009378 461 TAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (536)
Q Consensus 461 e~~~~~~~~~Wy~g~tLle~L~~l~~~ 487 (536)
+ |++.|..+|++
T Consensus 213 ~---------------L~~~L~~lp~~ 224 (224)
T cd04165 213 L---------------LHAFLNLLPLR 224 (224)
T ss_pred H---------------HHHHHHhcCCC
Confidence 5 88888887753
No 64
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=1.1e-21 Score=188.54 Aligned_cols=188 Identities=26% Similarity=0.311 Sum_probs=135.4
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
..+|+|+|++++|||||+++|++..+.+...... -.+.++....++.+|+++......+...+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV---------------EERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc---------------cccccccchhHHhcccccccceeEEEECCEE
Confidence 4689999999999999999999654433222100 0133555566777888888777777888999
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHH
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ 425 (536)
+.||||||+.+|...+..+++.+|++|+|+|+..+ ...+..+++..+...++| +|||+||+|+... ..
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~---~~ 134 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPDA---RP 134 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCCCCC---CH
Confidence 99999999999999999999999999999999876 234555666666667887 8999999999742 23
Q ss_pred HHHHHHHHHHHHHcCCCC--CCccEEEEEcccCCCcccCCCCcccccccch-hhHHHHHHh-cCC
Q 009378 426 DSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRP 486 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~--~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g-~tLle~L~~-l~~ 486 (536)
+.+.+++..++..++... ..++++++||++|+|+.+. ..|-.+ ..|++.|.. +|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~------~~~~~~~~~l~~~~~~~~~~ 193 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL------EDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc------ccchhhHHHHHHHHHhcCCC
Confidence 344555566655444322 2458999999999999763 334222 247777754 443
No 65
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.87 E-value=4.4e-22 Score=226.64 Aligned_cols=246 Identities=27% Similarity=0.362 Sum_probs=168.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEE----e
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY----F 339 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~----~ 339 (536)
.+.+||+|+||.++|||||+++|++..+.+.... .++ .+.++....|+.+|+|+...... +
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~~-----~~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 81 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AGQ-----QLYLDFDEQEQERGITINAANVSMVHEY 81 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CCc-----eeecCCCHHHHhhcchhhcccceeEEee
Confidence 4568999999999999999999998777654321 111 24578888899999998765433 5
Q ss_pred ecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009378 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 340 ~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
++.++.++|||||||.+|...+..+++.+|++|+|+|+..| +..++..++..+...++| +|+|+||+|+..
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g--------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~ 152 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG--------VMPQTETVLRQALKENVK-PVLFINKVDRLI 152 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC--------CCccHHHHHHHHHHcCCC-EEEEEEChhccc
Confidence 67889999999999999999999999999999999999987 466888888888888888 689999999864
Q ss_pred cc--------hhHHHHHHHHHHHHHHHc---C------CCCCCccEEEEEcccCCCcc------cCCCC-----------
Q 009378 420 YS--------KDRFDSIKVQLGTFLRSC---G------FKDASLTWIPLSALENQNLV------TAPDD----------- 465 (536)
Q Consensus 420 ~~--------~e~~eei~~~L~~~l~~~---g------~~~~~i~vipvSA~~GenI~------e~~~~----------- 465 (536)
.+ ..++..+...+..++... . +......+...|++.+++.. .....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 232 (720)
T TIGR00490 153 NELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDK 232 (720)
T ss_pred chhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhcc
Confidence 21 223333333333343221 0 00000112333444442210 00000
Q ss_pred -cccccccc-hhhHHHHHH-hcCCCCC-------------------------CCCCCeeEEEEEEEEeC-CCeEEEEEEE
Q 009378 466 -GRLLSWYK-GPCLLDAID-SLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACGKL 516 (536)
Q Consensus 466 -~~~~~Wy~-g~tLle~L~-~l~~~~~-------------------------~~~~P~~~~I~d~~~~~-~G~v~v~G~V 516 (536)
..+..|+- -..||++|. .+|.|.. +.+.|+...|++++..+ .|.+ +.|||
T Consensus 233 ~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~i-a~~RV 311 (720)
T TIGR00490 233 QKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEV-AVGRL 311 (720)
T ss_pred HHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEE-EEEEE
Confidence 00011221 135777774 3555521 12568999999998877 8988 89999
Q ss_pred EeeEEecCCEEEEecCCC
Q 009378 517 EAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 517 ~sG~Lk~gd~v~v~p~~~ 534 (536)
++|+|++||.|++.+.++
T Consensus 312 ~sGtL~~G~~l~~~~~~~ 329 (720)
T TIGR00490 312 YSGTIRPGMEVYIVDRKA 329 (720)
T ss_pred EeCEEcCCCEEEEcCCCC
Confidence 999999999999988763
No 66
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=2.2e-21 Score=182.31 Aligned_cols=162 Identities=30% Similarity=0.461 Sum_probs=114.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe-----ec
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-----DS 341 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~-----~~ 341 (536)
.||+++|++++|||||+++|++..+.+..... ..+..+....++.+|++.......+ ..
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM----------------KEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC----------------ceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 47999999999999999999976554432211 0234555566677888876544433 34
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
....++||||||+.+|...+..+++.+|++|||+|+..+. ..+....+..+...++| +|+|+||+|+....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~--------~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~ 135 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV--------EAQTLANFYLALENNLE-IIPVINKIDLPSAD 135 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc--------cHhhHHHHHHHHHcCCC-EEEEEECCCCCcCC
Confidence 5778999999999999999999999999999999998752 23444444455556777 99999999986421
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+..+++.. .+++. ...++++||++|+|+.+
T Consensus 136 ---~~~~~~~~~~---~~~~~--~~~~~~~Sa~~g~gi~~ 167 (179)
T cd01890 136 ---PERVKQQIED---VLGLD--PSEAILVSAKTGLGVED 167 (179)
T ss_pred ---HHHHHHHHHH---HhCCC--cccEEEeeccCCCCHHH
Confidence 2222233333 33432 23579999999999986
No 67
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.87 E-value=3e-21 Score=222.99 Aligned_cols=151 Identities=28% Similarity=0.397 Sum_probs=122.9
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.+||+|+||+++|||||+++|++..+.+.... .+ ..+.+|....|+.+|+|+......+.+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~------------~g---~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------------AG---DVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc------------CC---ceeeccCcHHHHHhCCceecceeEEEee
Confidence 45678999999999999999999998887765431 11 2356899999999999998766555542
Q ss_pred ----------------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCC
Q 009378 343 ----------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (536)
Q Consensus 343 ----------------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp 406 (536)
++.++|||||||.+|...+..+++.+|++|+|||+..| +..+++.++.++...++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G--------v~~~t~~~~~~~~~~~~p 152 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--------VCVQTETVLRQALGERIR 152 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC--------CcccHHHHHHHHHHCCCC
Confidence 67899999999999999999999999999999999988 678999999999999998
Q ss_pred cEEEEEecccccc----cch----hHHHHHHHHHHHHHH
Q 009378 407 QLIVAVNKMDAVQ----YSK----DRFDSIKVQLGTFLR 437 (536)
Q Consensus 407 ~vIVVINKiDl~~----~~~----e~~eei~~~L~~~l~ 437 (536)
+||++||||+.. .+. ..++++.++++.++.
T Consensus 153 -~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~ 190 (843)
T PLN00116 153 -PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190 (843)
T ss_pred -EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999872 111 456666666664433
No 68
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.86 E-value=8.4e-21 Score=219.83 Aligned_cols=181 Identities=23% Similarity=0.321 Sum_probs=139.0
Q ss_pred ccceEEEEEEEEeecCC------------------eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccc
Q 009378 327 ERGITMTVAVAYFDSKN------------------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388 (536)
Q Consensus 327 ~~GiTi~~~~~~~~~~~------------------~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~ 388 (536)
..|||..++...+.... ..++|||||||+.|...+..++..+|++|||+|++.|
T Consensus 491 aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G-------- 562 (1049)
T PRK14845 491 AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG-------- 562 (1049)
T ss_pred CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc--------
Confidence 46788777766554431 2389999999999998888888999999999999977
Q ss_pred hhhHHHHHHHHHHHcCCCcEEEEEeccccc-ccch---------------hHHHHHHHHH---HHHHHHcCCCC------
Q 009378 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAV-QYSK---------------DRFDSIKVQL---GTFLRSCGFKD------ 443 (536)
Q Consensus 389 ~~~qt~e~l~ll~~~~vp~vIVVINKiDl~-~~~~---------------e~~eei~~~L---~~~l~~~g~~~------ 443 (536)
+..++.+++.++...++| +|||+||+|+. .|.. ..++++...+ ...|...|+..
T Consensus 563 i~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~ 641 (1049)
T PRK14845 563 FKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRV 641 (1049)
T ss_pred CCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhh
Confidence 578999999999999987 99999999996 3431 1122222222 22245555542
Q ss_pred ----CCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCC------CCCCCCCCeeEEEEEEEEeC-CCeEEE
Q 009378 444 ----ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP------PPREFSKPLLMPICDVLKSQ-HGQVSA 512 (536)
Q Consensus 444 ----~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~------~~~~~~~P~~~~I~d~~~~~-~G~v~v 512 (536)
..+++|||||++|+||.+ |+++|..+.. .....+.|+++.|.+++..+ .|+| +
T Consensus 642 ~d~~~~v~iVpVSA~tGeGId~---------------Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~v-v 705 (1049)
T PRK14845 642 QDFTRTVAIVPVSAKTGEGIPE---------------LLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTT-I 705 (1049)
T ss_pred hhcCCCceEEEEEcCCCCCHHH---------------HHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeE-E
Confidence 367999999999999986 6666533221 23345789999999999999 9998 8
Q ss_pred EEEEEeeEEecCCEEEEecC
Q 009378 513 CGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 513 ~G~V~sG~Lk~gd~v~v~p~ 532 (536)
+|.|.+|+|++||.|+++|.
T Consensus 706 t~iv~~G~Lk~GD~iv~g~~ 725 (1049)
T PRK14845 706 DAIIYDGTLRRGDTIVVGGP 725 (1049)
T ss_pred EEEEEcCEEecCCEEEEccC
Confidence 99999999999999999996
No 69
>PTZ00416 elongation factor 2; Provisional
Probab=99.86 E-value=1.1e-20 Score=218.05 Aligned_cols=150 Identities=27% Similarity=0.394 Sum_probs=122.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.+.+||+|+||+++|||||+++|++..+.+.... .|. .+.+|....|+.+|+|+......+.+.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~~~ 81 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKN----------AGD-----ARFTDTRADEQERGITIKSTGISLYYEH 81 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eeecccchhhHhhcceeeccceEEEeec
Confidence 4567999999999999999999998777664421 111 345899999999999998766655554
Q ss_pred ---------CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009378 343 ---------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 343 ---------~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
++.++|+|||||.+|...+..+++.+|++|+|||+..| +..+++.++..+...++| +||++|
T Consensus 82 ~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g--------~~~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 82 DLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG--------VCVQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred ccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC--------cCccHHHHHHHHHHcCCC-EEEEEE
Confidence 67899999999999999999999999999999999988 678899999999999987 899999
Q ss_pred ccccc----ccc----hhHHHHHHHHHHHHHH
Q 009378 414 KMDAV----QYS----KDRFDSIKVQLGTFLR 437 (536)
Q Consensus 414 KiDl~----~~~----~e~~eei~~~L~~~l~ 437 (536)
|||+. +.+ ...++++.++++..+.
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99987 211 1345666677776665
No 70
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=9.4e-21 Score=178.39 Aligned_cols=168 Identities=39% Similarity=0.603 Sum_probs=126.9
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|.+|+|||||+++|++........... ....++....+..++++.......+...+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTV---------------EETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCce---------------ecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 48999999999999999999765443221110 012334445566677887777777777889999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ee 427 (536)
||||||+.++...+..++..+|++|+|+|+..+ ...+..+.+..+...+.| +++|+||+|+.. +..+..
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~--~~~~~~ 134 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG--------VQPQTREHLRIAREGGLP-IIVAINKIDRVG--EEDLEE 134 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------CcHHHHHHHHHHHHCCCC-eEEEEECCCCcc--hhcHHH
Confidence 999999999988888899999999999999876 234566666677766776 999999999984 344555
Q ss_pred HHHHHHHHHHHcCC---------CCCCccEEEEEcccCCCccc
Q 009378 428 IKVQLGTFLRSCGF---------KDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 428 i~~~L~~~l~~~g~---------~~~~i~vipvSA~~GenI~e 461 (536)
..+.+...++..+. .....+++++||++|.|+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~ 177 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE 177 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence 66667777766553 23457899999999999986
No 71
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.85 E-value=1.4e-20 Score=183.90 Aligned_cols=173 Identities=23% Similarity=0.292 Sum_probs=129.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-----
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS----- 341 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----- 341 (536)
.+|+|+|++|+|||||+++|+...+.+... ++......+.++....++.+|+++......+.+
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 379999999999999999999776654321 222333455678888889999998766555432
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc--
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ-- 419 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~-- 419 (536)
....++|||||||.+|...+..++..+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~ 139 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG--------VTSNTERLIRHAILEGLP-IVLVINKIDRLILE 139 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCccc
Confidence 357899999999999999999999999999999999876 234556666666666776 999999999861
Q ss_pred ------cchhHHHHHHHHHHHHHHHcCCCC------CCccEEEEEcccCCCcc
Q 009378 420 ------YSKDRFDSIKVQLGTFLRSCGFKD------ASLTWIPLSALENQNLV 460 (536)
Q Consensus 420 ------~~~e~~eei~~~L~~~l~~~g~~~------~~i~vipvSA~~GenI~ 460 (536)
....++.++.+.+..+++.+++.. ..-.++..||+.|+++.
T Consensus 140 ~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 140 LKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 123567778888888888887643 12235667777777663
No 72
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.84 E-value=2.7e-20 Score=185.44 Aligned_cols=130 Identities=38% Similarity=0.552 Sum_probs=110.2
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
||+|+||+|+|||||+++|++..+.+.... ... .+ .+.+|....|+.+|+|+......+.+.+..++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g-------~v~--~~----~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLG-------SVD--KG----TTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccc-------ccc--CC----cccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 589999999999999999998776654321 011 11 14567778889999999999999999999999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++.++...++| +|+++||+|+..
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~ 130 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRKLNIP-TIIFVNKIDRAG 130 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 999999999999999999999999999999987 456788888888888988 899999999875
No 73
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.84 E-value=1.7e-20 Score=190.23 Aligned_cols=165 Identities=29% Similarity=0.411 Sum_probs=131.0
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
||+|+||+|+|||||+++|++..+.+.... ... .+ .+.+|..+.|+.+|+|++.....+.+.+..++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g-------~v~--~~----~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIG-------EVH--GG----GATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccc-------ccc--CC----ccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 689999999999999999998776553311 001 11 45788999999999999999999999999999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ee 427 (536)
|||||||.+|...+..+++.+|++|||||+..| +..++..++.++...++| +|+++||+|+...+ +++
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g--------~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~---~~~ 135 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG--------VEPQTETVWRQADRYNVP-RIAFVNKMDRTGAD---FFR 135 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHH
Confidence 999999999999999999999999999999987 567888999999999998 89999999997533 344
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEEcccC-CCccc
Q 009378 428 IKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVT 461 (536)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~vipvSA~~G-enI~e 461 (536)
+..+++..+....+ ..++|+|+..+ .|+..
T Consensus 136 ~~~~l~~~l~~~~~----~~~~Pisa~~~f~g~vd 166 (270)
T cd01886 136 VVEQIREKLGANPV----PLQLPIGEEDDFRGVVD 166 (270)
T ss_pred HHHHHHHHhCCCce----EEEeccccCCCceEEEE
Confidence 55556655533222 24689999855 24443
No 74
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.6e-20 Score=197.60 Aligned_cols=234 Identities=31% Similarity=0.462 Sum_probs=185.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+..||+|+.|.++|||||.+++++..+.+..-.. .++. ...||....|+.+|||+..+..++.|.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~e----------v~~~---~a~md~m~~er~rgITiqSAAt~~~w~~ 103 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGE----------VRGG---GATMDSMELERQRGITIQSAATYFTWRD 103 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccc----------cccC---ceeeehHHHHHhcCceeeeceeeeeecc
Confidence 46789999999999999999999988776643211 1111 3568899999999999999999999999
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
++++|||||||.+|.-+..++++..|++|+|+++..| .+.|+...-.+++..++| .|..+||||+.+.+..
T Consensus 104 ~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~G--------VqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 104 YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAG--------VESQTETVWRQMKRYNVP-RICFINKMDRMGASPF 174 (721)
T ss_pred ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccc--------eehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChH
Confidence 9999999999999999999999999999999999988 678999999999999999 6899999998764421
Q ss_pred H-HHHHH-------------------------------------------------------------------------
Q 009378 424 R-FDSIK------------------------------------------------------------------------- 429 (536)
Q Consensus 424 ~-~eei~------------------------------------------------------------------------- 429 (536)
+ ++++.
T Consensus 175 ~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l 254 (721)
T KOG0465|consen 175 RTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETL 254 (721)
T ss_pred HHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 1 11111
Q ss_pred ------------HHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHH-HhcCCCCCC------
Q 009378 430 ------------VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPRE------ 490 (536)
Q Consensus 430 ------------~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L-~~l~~~~~~------ 490 (536)
++|...++..-+....+|++.-||+++.|+. .||+++ +.+|.|...
T Consensus 255 ~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQ---------------PlLDAVvdYLPsP~Ev~n~a~~ 319 (721)
T KOG0465|consen 255 AEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQ---------------PLLDAVVDYLPSPSEVENYALN 319 (721)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcc---------------hHHHHHHHhCCChhhhcccccc
Confidence 2333333444445556788999999999996 499997 455544210
Q ss_pred --------------CCC-CeeEEEEEEEEeCCCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009378 491 --------------FSK-PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 491 --------------~~~-P~~~~I~d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
.++ ||....+.+...+.|++ .+-||.+|+|++|+.|+...++++
T Consensus 320 ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqL-TyvRvYqG~L~kG~~iyN~rtgKK 378 (721)
T KOG0465|consen 320 KETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQL-TYVRVYQGTLSKGDTIYNVRTGKK 378 (721)
T ss_pred cCCCCccceEeccCCCCCceeeeEEEeeecCccce-EEEEEeeeeecCCcEEEecCCCce
Confidence 122 88888888887779998 588999999999999998887764
No 75
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=6e-20 Score=184.44 Aligned_cols=152 Identities=26% Similarity=0.324 Sum_probs=113.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++.--|+|+|+||+|||||+|+|++.+..+++.. .+++..+.+|+ +..+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k----------------------~QTTR~~I~GI--------~t~~ 52 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK----------------------PQTTRNRIRGI--------VTTD 52 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC----------------------cchhhhheeEE--------EEcC
Confidence 35567799999999999999999999998887764 33455556666 4457
Q ss_pred CeEEEEEeCCCccc--------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009378 343 NYHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 343 ~~~i~LIDTPGh~d--------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
+.+++|+||||... +......++..+|++|||||+.++ +.......++.++....| +|+++||
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~--------~~~~d~~il~~lk~~~~p-vil~iNK 123 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG--------WGPGDEFILEQLKKTKTP-VILVVNK 123 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc--------CCccHHHHHHHHhhcCCC-eEEEEEc
Confidence 89999999999322 345567778889999999999986 556777888888886667 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|++.. ...+..+.+.+. ....| ..++|+||++|.|+..
T Consensus 124 ID~~~~-~~~l~~~~~~~~---~~~~f----~~ivpiSA~~g~n~~~ 162 (298)
T COG1159 124 IDKVKP-KTVLLKLIAFLK---KLLPF----KEIVPISALKGDNVDT 162 (298)
T ss_pred cccCCc-HHHHHHHHHHHH---hhCCc----ceEEEeeccccCCHHH
Confidence 999853 221222222222 22333 3679999999999974
No 76
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.3e-20 Score=190.23 Aligned_cols=239 Identities=27% Similarity=0.350 Sum_probs=175.9
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+..+.+|+-||++|||||...|+..-++|...... .++++..+ ...|....|+++||.+....-.|++.
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~V--------k~rk~~~~-a~SDWM~iEkqRGISVtsSVMqF~Y~ 79 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRKSGKH-AKSDWMEIEKQRGISVTSSVMQFDYA 79 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhccee--------eeccCCcc-cccHHHHHHHhcCceEEeeEEEeccC
Confidence 4567789999999999999999998766665433211 12222222 23566788999999999999999999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..++|+|||||++|...+.+.+..+|.+|.||||..| +..||+.+++.++..++| ||-.+||+|+...++
T Consensus 80 ~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG--------iE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP 150 (528)
T COG4108 80 DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------IEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDP 150 (528)
T ss_pred CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccC--------ccHHHHHHHHHHhhcCCc-eEEEeeccccccCCh
Confidence 99999999999999999999999999999999999988 789999999999999999 999999999875332
Q ss_pred -hHHHHHHHHHHHHHHHcC-------------------------------------------------------------
Q 009378 423 -DRFDSIKVQLGTFLRSCG------------------------------------------------------------- 440 (536)
Q Consensus 423 -e~~eei~~~L~~~l~~~g------------------------------------------------------------- 440 (536)
+.+++|.+.|.-...-+.
T Consensus 151 ~ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~ 230 (528)
T COG4108 151 LELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL 230 (528)
T ss_pred HHHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHH
Confidence 444444433322110000
Q ss_pred ---------------CCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCCCCC----------CCCCe
Q 009378 441 ---------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPRE----------FSKPL 495 (536)
Q Consensus 441 ---------------~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~~~~----------~~~P~ 495 (536)
......|+|.-||+++-|+. .||+++..+.|++.. .+..|
T Consensus 231 EL~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~---------------~~L~~~~~~AP~P~~~~a~~~~v~p~e~kf 295 (528)
T COG4108 231 ELVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVD---------------HFLDALVDWAPSPRARQADTREVEPTEDKF 295 (528)
T ss_pred HHHHhhccccCHHHHhcCCccceEehhhhhccCHH---------------HHHHHHHhhCCCCCcccCCcCcccCCCCcc
Confidence 00112277888888888886 499998665443221 13334
Q ss_pred eEEEEEEE---EeC-CCeEEEEEEEEeeEEecCCEEEEecCCCC
Q 009378 496 LMPICDVL---KSQ-HGQVSACGKLEAGALRSGLKVCNFLTRFQ 535 (536)
Q Consensus 496 ~~~I~d~~---~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~~ 535 (536)
.-.|+.+. ..+ +..+ +.-||.+|....|++|....+|+.
T Consensus 296 sGFVFKIQANMDp~HRDRI-AFmRv~SGkferGMkv~h~rtGK~ 338 (528)
T COG4108 296 SGFVFKIQANMDPKHRDRI-AFMRVCSGKFERGMKVTHVRTGKD 338 (528)
T ss_pred ceEEEEEEcCCCcccccce-eEEEeccccccCCceeeeeecCCc
Confidence 44455443 233 7777 688999999999999998877753
No 77
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=3e-20 Score=173.32 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=101.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|.+|+|||||+|+|++....+.. .+|+|++.....+...+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n-------------------------------~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGN-------------------------------WPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEE-------------------------------STTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecC-------------------------------CCCCCeeeeeEEEEecCceE
Confidence 58999999999999999999976644332 27888888888888889999
Q ss_pred EEEeCCCcccch------hhHhhh--cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 347 VVLDSPGHKDFV------PNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 347 ~LIDTPGh~df~------~~~~~~--l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.|+|+||.-.+. .....+ ...+|++|+|+|+++ + ....+++..+.++++| +|+|+||+|++
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---------l-~r~l~l~~ql~e~g~P-~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---------L-ERNLYLTLQLLELGIP-VVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---------H-HHHHHHHHHHHHTTSS-EEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---------H-HHHHHHHHHHHHcCCC-EEEEEeCHHHH
Confidence 999999943321 111222 257999999999985 2 4556777788889998 99999999998
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......++ .+.|.+. +|+ |++++||++|+|+.+
T Consensus 119 ~~~g~~id--~~~Ls~~---Lg~-----pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 119 ERKGIEID--AEKLSER---LGV-----PVIPVSARTGEGIDE 151 (156)
T ss_dssp HHTTEEE---HHHHHHH---HTS------EEEEBTTTTBTHHH
T ss_pred HHcCCEEC--HHHHHHH---hCC-----CEEEEEeCCCcCHHH
Confidence 53222111 2333333 344 899999999999986
No 78
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.82 E-value=1.2e-19 Score=183.80 Aligned_cols=137 Identities=32% Similarity=0.475 Sum_probs=111.6
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
..||+|+||+|+|||||+++|++..+.+..... .. +++.... ..+|....++.+|+++......+++.+..
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~-------v~-~~~~~~~-t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGA-------VK-ARKSRKH-ATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCce-------ec-ccccCCC-ccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 478999999999999999999988777654211 00 1111111 24677889999999999999999999999
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
++|||||||.+|...+..+++.+|++|+|+|+..+ +..++..++.++...++| +|+++||+|+...
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g--------~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a 138 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------VEPQTRKLFEVCRLRGIP-IITFINKLDREGR 138 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------ccHHHHHHHHHHHhcCCC-EEEEEECCccCCC
Confidence 99999999999999899999999999999999876 445677777888778888 8999999998653
No 79
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=2.8e-19 Score=165.69 Aligned_cols=150 Identities=28% Similarity=0.379 Sum_probs=106.2
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec---CCe
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KNY 344 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~ 344 (536)
.|+|+|++|+|||||+++|+...... ...+++|.......+.. .+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-------------------------------GEAGGITQHIGAFEVPAEVLKIP 50 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-------------------------------ccCCCeEEeeccEEEecccCCcc
Confidence 59999999999999999998432111 11234454444444444 367
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhH
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.+.||||||+..|...+..++..+|++|+|+|+..+ ...++.+.+..+...++| ++||+||+|+.....+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~ 121 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDG--------VMPQTIEAIKLAKAANVP-FIVALNKIDKPNANPER 121 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEEceecccccHHH
Confidence 899999999999888888888999999999999876 235666777777788887 99999999987433222
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSC--GFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~--g~~~~~i~vipvSA~~GenI~e 461 (536)
+...+..+.... .+ ...++++++||++|+|+.+
T Consensus 122 ---~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 122 ---VKNELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred ---HHHHHHHhhccccccc-cCcCcEEEeecccCCCHHH
Confidence 222222221110 11 1346899999999999985
No 80
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.2e-19 Score=194.88 Aligned_cols=215 Identities=26% Similarity=0.355 Sum_probs=153.6
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009378 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
.+..+.+.++|+||+++|||-|+..|.+.... ..-..|||..++..+|.
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVq-------------------------------egeaggitqqIgAt~fp 518 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQ-------------------------------EGEAGGITQQIGATYFP 518 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccc-------------------------------cccccceeeeccccccc
Confidence 34567889999999999999999999753211 11123444443333332
Q ss_pred ------------------cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH
Q 009378 341 ------------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (536)
Q Consensus 341 ------------------~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~ 402 (536)
+.-..+.+||||||+.|...+.++...||++|||||..+| +.+|+.+.+.+|+.
T Consensus 519 ~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG--------lepqtiESi~lLR~ 590 (1064)
T KOG1144|consen 519 AENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG--------LEPQTIESINLLRM 590 (1064)
T ss_pred hHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc--------CCcchhHHHHHHHh
Confidence 2335689999999999999999999999999999999988 78999999999999
Q ss_pred cCCCcEEEEEeccccc-ccc---------------hhHHHHHHHH---HHHHHHHcCCCC----------CCccEEEEEc
Q 009378 403 FGVDQLIVAVNKMDAV-QYS---------------KDRFDSIKVQ---LGTFLRSCGFKD----------ASLTWIPLSA 453 (536)
Q Consensus 403 ~~vp~vIVVINKiDl~-~~~---------------~e~~eei~~~---L~~~l~~~g~~~----------~~i~vipvSA 453 (536)
.+.| +||++||+|++ +|. ....+++... +...|...|++- ..+.++|+||
T Consensus 591 rktp-FivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA 669 (1064)
T KOG1144|consen 591 RKTP-FIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSA 669 (1064)
T ss_pred cCCC-eEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccc
Confidence 9998 99999999976 332 1111222222 222233334321 2457899999
Q ss_pred ccCCCcccCCCCcccccccchhhHHHHHHhc----CCCCCCCCCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEE
Q 009378 454 LENQNLVTAPDDGRLLSWYKGPCLLDAIDSL----RPPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVC 528 (536)
Q Consensus 454 ~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l----~~~~~~~~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~ 528 (536)
.+|+||-. |+-.|.++ ....-.....+...|.++-.+. .|+. +-..+..|.|+.||.|+
T Consensus 670 ~sGeGipd---------------Ll~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtT-IDViLvNG~L~eGD~Iv 733 (1064)
T KOG1144|consen 670 ISGEGIPD---------------LLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTT-IDVILVNGELHEGDQIV 733 (1064)
T ss_pred ccCCCcHH---------------HHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCce-EEEEEEcceeccCCEEE
Confidence 99999965 44333221 1112223456778898988888 9987 79999999999999999
Q ss_pred Eec
Q 009378 529 NFL 531 (536)
Q Consensus 529 v~p 531 (536)
|.-
T Consensus 734 vcG 736 (1064)
T KOG1144|consen 734 VCG 736 (1064)
T ss_pred EcC
Confidence 854
No 81
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=3.4e-19 Score=187.87 Aligned_cols=156 Identities=26% Similarity=0.347 Sum_probs=133.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.||+|||||+|+|+++...++.. ..|+|.+.....+++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~------------------------------~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSD------------------------------IAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecC------------------------------CCCccccceeeeEEECC
Confidence 457999999999999999999999876655443 48999999999999999
Q ss_pred eEEEEEeCCCccc----------c-hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEE
Q 009378 344 YHVVVLDSPGHKD----------F-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (536)
Q Consensus 344 ~~i~LIDTPGh~d----------f-~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVI 412 (536)
..+.||||+|... | ...++.++..+|+++||+||.+| +..|....+.++...+.+ +|||+
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~--------~~~qD~~ia~~i~~~g~~-~vIvv 296 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG--------ISEQDLRIAGLIEEAGRG-IVIVV 296 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC--------chHHHHHHHHHHHHcCCC-eEEEE
Confidence 9999999999332 2 34456778889999999999998 678999999999999998 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009378 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
||+|++..+...+++.+.++...+..+++ .+++++||++|.|+.++
T Consensus 297 NKWDl~~~~~~~~~~~k~~i~~~l~~l~~----a~i~~iSA~~~~~i~~l 342 (444)
T COG1160 297 NKWDLVEEDEATMEEFKKKLRRKLPFLDF----APIVFISALTGQGLDKL 342 (444)
T ss_pred EccccCCchhhHHHHHHHHHHHHhccccC----CeEEEEEecCCCChHHH
Confidence 99999976567788889999998888887 36799999999999863
No 82
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=2.5e-19 Score=188.90 Aligned_cols=152 Identities=27% Similarity=0.329 Sum_probs=123.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
..|+|||+||+|||||+|||++...++..+. +|+|.+..+...++.+..|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------------------------------pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------------------------------PGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC------------------------------CCCccCCccceeEEcCceE
Confidence 6799999999999999999998877766653 8899998888889999999
Q ss_pred EEEeCCCccc---------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009378 347 VVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 347 ~LIDTPGh~d---------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
.+|||+|... ....+..++..||++|||||+..| +.....++..+++..+.| +|+|+||+|-
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G--------it~~D~~ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG--------ITPADEEIAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence 9999999553 234456678889999999999998 578889999999976677 9999999997
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcC
Q 009378 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR 485 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~ 485 (536)
.+. +....-+.++|+.. .+++||.+|.|+.+ |+++|....
T Consensus 125 ~~~---------e~~~~efyslG~g~----~~~ISA~Hg~Gi~d---------------Lld~v~~~l 164 (444)
T COG1160 125 LKA---------EELAYEFYSLGFGE----PVPISAEHGRGIGD---------------LLDAVLELL 164 (444)
T ss_pred chh---------hhhHHHHHhcCCCC----ceEeehhhccCHHH---------------HHHHHHhhc
Confidence 632 22233355678754 49999999999985 999986543
No 83
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=1.9e-18 Score=159.54 Aligned_cols=153 Identities=25% Similarity=0.270 Sum_probs=103.4
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
+++|+++|++|+|||||+++|++....+.. ..++.+.......+...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS------------------------------DIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc------------------------------CCCCCccCceeeEEEECCee
Confidence 578999999999999999999854321111 11233333333344556778
Q ss_pred EEEEeCCCcccch-----------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009378 346 VVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 346 i~LIDTPGh~df~-----------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
+.+|||||+.+.. ......+..+|++|+|+|+..+. ..+....+..+...+.| +|+|+||
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~nK 122 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI--------TEQDLRIAGLILEEGKA-LVIVVNK 122 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc--------chhHHHHHHHHHhcCCC-EEEEEec
Confidence 9999999964431 12344567899999999998762 23344455555556766 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+........+.+.+.+...+...+ ..+++++||++|+|+.+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 123 WDLVEKDSKTMKEFKKEIRRKLPFLD----YAPIVFISALTGQGVDK 165 (174)
T ss_pred cccCCccHHHHHHHHHHHHhhccccc----CCceEEEeccCCCCHHH
Confidence 99985433455555566555543222 35789999999999985
No 84
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.8e-19 Score=178.27 Aligned_cols=214 Identities=25% Similarity=0.369 Sum_probs=169.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (536)
+..+||+-+||+-+||||++.++.+-. +-.++.|.++.||+..++.....
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~----------------------------TvrFK~ELERNITIKLGYANAKIYk 87 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVH----------------------------TVRFKNELERNITIKLGYANAKIYK 87 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccce----------------------------EEEehhhhhcceeEEeccccceEEe
Confidence 457999999999999999999997421 11123344455555544432100
Q ss_pred ------------------------------C-----CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccc
Q 009378 342 ------------------------------K-----NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGM 386 (536)
Q Consensus 342 ------------------------------~-----~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~ 386 (536)
. -+.+.|+|+|||.-+...|+.++.-.|+++|+|.+++.-
T Consensus 88 c~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC----- 162 (466)
T KOG0466|consen 88 CDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC----- 162 (466)
T ss_pred cCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-----
Confidence 0 146889999999999999999999999999999998752
Q ss_pred cchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCc
Q 009378 387 NTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (536)
Q Consensus 387 ~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~ 466 (536)
.++|+.||+..+.-+.++++|++-||+|++. +....+-.+++..|++..... ..|++|+||.-+.||+
T Consensus 163 --PQPQTsEHLaaveiM~LkhiiilQNKiDli~--e~~A~eq~e~I~kFi~~t~ae--~aPiiPisAQlkyNId------ 230 (466)
T KOG0466|consen 163 --PQPQTSEHLAAVEIMKLKHIIILQNKIDLIK--ESQALEQHEQIQKFIQGTVAE--GAPIIPISAQLKYNID------ 230 (466)
T ss_pred --CCCchhhHHHHHHHhhhceEEEEechhhhhh--HHHHHHHHHHHHHHHhccccC--CCceeeehhhhccChH------
Confidence 5789999999999999999999999999994 344444456677777665553 3478999999999997
Q ss_pred ccccccchhhHHHHH-HhcCCCCCCCCCCeeEEEEEEEEeC---------CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 467 RLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 467 ~~~~Wy~g~tLle~L-~~l~~~~~~~~~P~~~~I~d~~~~~---------~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
.+.++| ..+|.|.|++..|.+|.|...|.++ .|.| +.|.+..|.|+.||.|-+-|.
T Consensus 231 ---------~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgv-aggsil~Gvlkvg~~IEiRPG 296 (466)
T KOG0466|consen 231 ---------VVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGV-AGGSILKGVLKVGQEIEIRPG 296 (466)
T ss_pred ---------HHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCcc-ccchhhhhhhhcCcEEEecCc
Confidence 499998 6799999999999999998888653 4777 799999999999999999886
No 85
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=6.1e-19 Score=163.68 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=100.0
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|++|+|||||+++|++....... .. ... ...|+......+.+.+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~-----------------------~~--~~~--~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG-----------------------LP--PSK--ITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC-----------------------Cc--ccc--cCCccccceEEEEECCEEEE
Confidence 5899999999999999999853211000 00 001 11122222333455688999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH---HcCCCcEEEEEecccccccchhH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~---~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
||||||+..|...+...+..+|++|||+|+.... .+.........+++ ..++| +|||+||+|+.. ...
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~--~~~ 124 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE------RFEESKSALEKVLRNEALEGVP-LLILANKQDLPD--ALS 124 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHH------HHHHHHHHHHHHHhChhhcCCC-EEEEEEcccccc--CCC
Confidence 9999999999888888899999999999997541 11111112222222 23566 999999999864 233
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+++...+....+..+. ..++++++||++|+|+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 125 VEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGVRE 159 (167)
T ss_pred HHHHHHHhccccccccC--CceEEEEeeCCCCcCHHH
Confidence 33444444443332332 346899999999999986
No 86
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=2.2e-18 Score=185.71 Aligned_cols=154 Identities=25% Similarity=0.285 Sum_probs=117.0
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|++|+|||||+++|++....+. ...+|+|.+.....+...+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~~ 221 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIV------------------------------SDIAGTTRDSIDTPFERDGQ 221 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCceEEEEEEEEEECCe
Confidence 469999999999999999999996432221 22367777766666777888
Q ss_pred EEEEEeCCCcccc-----------hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009378 345 HVVVLDSPGHKDF-----------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 345 ~i~LIDTPGh~df-----------~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
.+.||||||+... ...+..++..+|++|||+|+..+ ...+...++.++...+.| +|||+|
T Consensus 222 ~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~--------~~~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 222 KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG--------ITEQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCc-EEEEEE
Confidence 9999999996432 12345577889999999999987 456777777888778887 999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCC
Q 009378 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~ 463 (536)
|+|+. ..+..+++.+.+...+.... .++++++||++|.|+.++.
T Consensus 293 K~Dl~--~~~~~~~~~~~~~~~l~~~~----~~~i~~~SA~~~~gv~~l~ 336 (435)
T PRK00093 293 KWDLV--DEKTMEEFKKELRRRLPFLD----YAPIVFISALTGQGVDKLL 336 (435)
T ss_pred CccCC--CHHHHHHHHHHHHHhccccc----CCCEEEEeCCCCCCHHHHH
Confidence 99998 34455666666666654433 3589999999999998753
No 87
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=3.7e-18 Score=173.05 Aligned_cols=145 Identities=21% Similarity=0.237 Sum_probs=95.8
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|++|+|||||+|+|++....+.... +++|...........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~------------------------------~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPK------------------------------AQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCC------------------------------CCcccCcEEEEEEcCCcEEE
Confidence 589999999999999999997654433221 12222111111233556799
Q ss_pred EEeCCCcccc--------hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009378 348 VLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 348 LIDTPGh~df--------~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
||||||+... ...+..++..+|++|+|+|++.+. ... ..++..+...+.| +|+|+||+|+..
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~--------~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~ 121 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWN--------GDG-EFVLTKLQNLKRP-VVLTRNKLDNKF 121 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC--------chH-HHHHHHHHhcCCC-EEEEEECeeCCC
Confidence 9999996432 223456678899999999998652 112 4455666667777 999999999973
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... +...+..+....++ .+++++||++|.|+.+
T Consensus 122 --~~~---~~~~~~~~~~~~~~----~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 122 --KDK---LLPLIDKYAILEDF----KDIVPISALTGDNTSF 154 (270)
T ss_pred --HHH---HHHHHHHHHhhcCC----CceEEEecCCCCCHHH
Confidence 222 22333333333333 2679999999999986
No 88
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=2.6e-18 Score=184.61 Aligned_cols=156 Identities=25% Similarity=0.263 Sum_probs=116.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|++|+|||||+++|++....+. ...+|+|.+.....+...+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~ 219 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV------------------------------SDIAGTTRDSIDIPFERNG 219 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec------------------------------CCCCCceECcEeEEEEECC
Confidence 3468999999999999999999996432221 1235666665555666677
Q ss_pred eEEEEEeCCCcccch-----------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEE
Q 009378 344 YHVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (536)
Q Consensus 344 ~~i~LIDTPGh~df~-----------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVI 412 (536)
..+.||||||+.++. ..+..+++.+|++|+|+|+..+ ...+...++..+...+.| +|||+
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~ 290 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG--------ITEQDLRIAGLILEAGKA-LVIVV 290 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEE
Confidence 899999999975432 1234567889999999999987 445667777777777887 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCC
Q 009378 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~ 463 (536)
||+|+.. ....++++.+.+...+...+ .++++++||++|.|+.++.
T Consensus 291 NK~Dl~~-~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~l~ 336 (429)
T TIGR03594 291 NKWDLVK-DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDKLL 336 (429)
T ss_pred ECcccCC-CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHHHH
Confidence 9999983 34556667677766654433 3578999999999998743
No 89
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=7e-18 Score=176.52 Aligned_cols=149 Identities=24% Similarity=0.336 Sum_probs=99.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+|+|++....+... ..+.|.......+..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~------------------------------k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTP------------------------------KVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccC------------------------------CCCCccCcEEEEEEeCC
Confidence 456899999999999999999999654432221 12223222223345577
Q ss_pred eEEEEEeCCCccc--------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 344 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 344 ~~i~LIDTPGh~d--------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.++.||||||+.. +.......+..+|++|||||+..+ +......++..++..+.| +|+|+||+
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--------~~~~~~~il~~l~~~~~p-~IlViNKi 170 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--------FDDITHNILDKLRSLNIV-PIFLLNKI 170 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEhh
Confidence 8899999999643 222233457889999999998764 334445566677777777 67899999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+... ...+ +..++.... ....++++||++|.|+.+
T Consensus 171 Dl~~~---~~~~----~~~~l~~~~---~~~~i~~iSAktg~gv~e 206 (339)
T PRK15494 171 DIESK---YLND----IKAFLTENH---PDSLLFPISALSGKNIDG 206 (339)
T ss_pred cCccc---cHHH----HHHHHHhcC---CCcEEEEEeccCccCHHH
Confidence 98632 2222 333333222 124689999999999986
No 90
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.76 E-value=6.8e-18 Score=170.75 Aligned_cols=130 Identities=32% Similarity=0.462 Sum_probs=105.3
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
||+|+|++|+|||||+++|++..+.+.... .... + .+.++....++.+++++......+.+.+..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g-------~v~~--g----~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLG-------SVED--G----TTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCC-------eecC--C----cccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 589999999999999999997665543221 0000 1 23456667788889988888888888999999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
||||||+.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +++|+||+|+..
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g--------~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~ 130 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSG--------VEVGTEKLWEFADEAGIP-RIIFINKMDRER 130 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCccCC
Confidence 999999999999999999999999999999987 345677777788888988 889999999874
No 91
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=2.7e-17 Score=152.89 Aligned_cols=146 Identities=23% Similarity=0.223 Sum_probs=96.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|+...... ......+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-----------------------------QQLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CcCCceeeEEEEEEEEECCEEEEE
Confidence 579999999999999999998432110 001112222222222334445678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||++.|...+..+++.+|++|||+|++.+.. + ......+..++.. .+| +|||+||+|+... .
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~---~ 120 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT------Y-KNLSKWYEELREYRPEIP-CIVVANKIDLDPS---V 120 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhCCCCc-EEEEEECccCchh---H
Confidence 899999999999888889999999999999986521 1 1223333444433 455 9999999998521 1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
......+.+..+ ++++++||++|.|+.+
T Consensus 121 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 121 ----TQKKFNFAEKHN-----LPLYYVSAADGTNVVK 148 (161)
T ss_pred ----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 112223333333 3789999999999986
No 92
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=2.2e-17 Score=156.66 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=102.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|++..... ......|.|........ +
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~--~- 63 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLA-----------------------------RTSKTPGRTQLINFFEV--N- 63 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------------------------cccCCCCcceEEEEEEe--C-
Confidence 567899999999999999999998532100 00112344444433322 2
Q ss_pred eEEEEEeCCCcc----------cchhhHhhhc---ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEE
Q 009378 344 YHVVVLDSPGHK----------DFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (536)
Q Consensus 344 ~~i~LIDTPGh~----------df~~~~~~~l---~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIV 410 (536)
..+.||||||+. .+...+..++ ..++++|+|+|+..+ +......++.++...++| +|+
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~--------~~~~~~~~~~~~~~~~~p-vii 134 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP--------LKELDLEMLEWLRERGIP-VLI 134 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEE
Confidence 369999999953 2222222233 347899999999875 345555666777777887 999
Q ss_pred EEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcc
Q 009378 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (536)
Q Consensus 411 VINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~ 460 (536)
|+||+|+.. ...++...++++..+...+. .+++|++||++|+|++
T Consensus 135 v~nK~D~~~--~~~~~~~~~~i~~~l~~~~~---~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 135 VLTKADKLK--KSELNKQLKKIKKALKKDAD---DPSVQLFSSLKKTGID 179 (179)
T ss_pred EEECcccCC--HHHHHHHHHHHHHHHhhccC---CCceEEEECCCCCCCC
Confidence 999999973 34455566777777766532 3478999999999984
No 93
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=9.4e-18 Score=157.70 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=98.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|++|+|||||+++|++.... ...+..|..+ ..+...+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~------------------------------~~~~t~g~~~----~~~~~~~ 57 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID------------------------------TISPTLGFQI----KTLEYEG 57 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC------------------------------CcCCccccce----EEEEECC
Confidence 45689999999999999999999853110 0011122211 1233357
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH---HcCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~---~~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||++.+...+...++.+|++|||+|+.... . +.....++..++. ..+.| +|||+||+|+...
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 130 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL---R---LDDCKRELKELLQEERLAGAT-LLILANKQDLPGA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHhChhhcCCC-EEEEEECcccccC
Confidence 88999999999988877778889999999999998641 1 1111122222222 23555 9999999999742
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... +++..++.........++++++||++|+|+.+
T Consensus 131 --~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 131 --LSE----EEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred --CCH----HHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 122 22333333222333456899999999999986
No 94
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.75 E-value=1.6e-17 Score=153.22 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=95.4
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||++++++.... .. .. +..+... .....+......
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~--~~----------------------~~-----~t~~~~~-~~~~~~~~~~~~ 51 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV--TD----------------------YD-----PTIEDSY-TKQCEIDGQWAI 51 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--cc----------------------cC-----CCccceE-EEEEEECCEEEE
Confidence 479999999999999999999853211 00 00 0001000 111112233457
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~ 422 (536)
+.||||||+.+|...+...++.+|++|+|+|++... .+ .....+...+.+. .++| +|||+||+|+.....
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~ 124 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG---SF---EEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRK 124 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HH---HHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccce
Confidence 889999999999888888899999999999998642 11 1122222222222 3455 999999999874321
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ++...+++..++ +++++||++|.|+.+
T Consensus 125 ~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 125 VSR----EEGQELARKLKI-----PYIETSAKDRLNVDK 154 (164)
T ss_pred ecH----HHHHHHHHHcCC-----cEEEeeCCCCCCHHH
Confidence 111 223344444443 789999999999986
No 95
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=2.7e-17 Score=152.93 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=97.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|++|+|||||+++|++..... ......++........+......
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 53 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE-----------------------------RQGNTIGVDFTMKTLEIEGKRVK 53 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc-----------------------------cCCCccceEEEEEEEEECCEEEE
Confidence 5899999999999999999997421100 01111222222222222222357
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~ 422 (536)
+.||||||++.|...+...++.+|++|+|+|++... . +. .....+..+.. .++| +|||+||+|+.....
T Consensus 54 l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~---s---~~-~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 54 LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS---S---FE-SVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQRE 125 (165)
T ss_pred EEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH---H---HH-hHHHHHHHHHHhCCCCCc-EEEEEECcccccccc
Confidence 899999999999888888889999999999998652 1 11 22223333332 2455 999999999975322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... +.+..+.+..++ ..++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 126 VLF----EEACTLAEKNGM----LAVLETSAKESQNVEE 156 (165)
T ss_pred cCH----HHHHHHHHHcCC----cEEEEEECCCCCCHHH
Confidence 222 223334443332 3679999999999986
No 96
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.7e-17 Score=151.36 Aligned_cols=140 Identities=26% Similarity=0.282 Sum_probs=97.4
Q ss_pred EEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEEE
Q 009378 270 AIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVL 349 (536)
Q Consensus 270 aIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~LI 349 (536)
+++|++|+|||||+++|++..... .....++|...........+..+.||
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI------------------------------VEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe------------------------------ecCCCCceeCceeEEEEECCeEEEEE
Confidence 589999999999999998532111 11123445444445556677889999
Q ss_pred eCCCcccchh--------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 350 DSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 350 DTPGh~df~~--------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
||||+..+.. .....++.+|++|+|+|+..+. .....++..+++..+.| +|+|+||+|+....
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~ 121 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL--------TPADEEIAKYLRKSKKP-VILVVNKVDNIKEE 121 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC--------CccHHHHHHHHHhcCCC-EEEEEECcccCChH
Confidence 9999888543 3455678899999999998652 23445566677777777 99999999997532
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. ...+...++ .+++++||++|.|+.+
T Consensus 122 ~~---------~~~~~~~~~----~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 122 DE---------AAEFYSLGF----GEPIPISAEHGRGIGD 148 (157)
T ss_pred HH---------HHHHHhcCC----CCeEEEecccCCCHHH
Confidence 11 112223333 1579999999999986
No 97
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.74 E-value=5.9e-17 Score=149.20 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=97.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC--e
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~ 344 (536)
.+|+|+|++|+|||||+++|++..... ...++++.+.....+..++ .
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-------------------------------QYQATIGIDFLSKTMYLEDKTV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-------------------------------cCCCceeeeEEEEEEEECCEEE
Confidence 379999999999999999998532211 1122333333333333333 5
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC--CCcEEEEEecccccccch
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~--vp~vIVVINKiDl~~~~~ 422 (536)
.+.||||||+..+...+...++.+|++|+|+|.+.+. .+.........+....+ +| +|+|+||+|+.....
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~ 122 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQ------SFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQ 122 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCc
Confidence 6899999999999888888899999999999998642 12222222222333333 55 999999999963222
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+ ++..+.+..+ ++++++||++|+|+.+
T Consensus 123 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 123 VSTE----EGEKKAKELN-----AMFIETSAKAGHNVKE 152 (161)
T ss_pred cCHH----HHHHHHHHhC-----CEEEEEeCCCCCCHHH
Confidence 2222 2233333333 4789999999999986
No 98
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.74 E-value=3e-17 Score=150.46 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=94.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++....... .+..+... .....+......+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~-----------------------------~~t~~~~~-~~~~~~~~~~~~~ 51 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-----------------------------DPTIEDSY-RKQVVIDGETCLL 51 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc-----------------------------CCcchheE-EEEEEECCEEEEE
Confidence 68999999999999999999853211000 00011111 1111222334567
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||++.|...+...++.+|++++|+|..... . +.....+...+.+. .++| +|||+||+|+... ..
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~-~~ 123 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---S---FEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAAR-TV 123 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc-ee
Confidence 89999999999888888899999999999988541 1 22222222222222 3455 9999999998742 11
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ...+..+.+..++ +++++||++|.|+.+
T Consensus 124 ~----~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 124 S----SRQGQDLAKSYGI-----PYIETSAKTRQGVEE 152 (162)
T ss_pred c----HHHHHHHHHHhCC-----eEEEecCCCCCCHHH
Confidence 1 2233334444443 789999999999986
No 99
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.74 E-value=3.2e-17 Score=151.14 Aligned_cols=154 Identities=17% Similarity=0.120 Sum_probs=95.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|++|+|||||+++|++..... ...+..+.........+......+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~l 51 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-----------------------------KYLPTIGIDYGVKKVSVRNKEVRV 51 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCccceeEEEEEEEECCeEEEE
Confidence 589999999999999999998532110 001112222222233334455788
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||+..|...+...++.+|++|||+|.+.... +..+..+..+....... ....|+|+|+||+|+......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 128 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV 128 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccccc
Confidence 999999999988888888899999999999986421 11111122222221111 012349999999998732111
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. .+...+....+ ++++++||++|+|+.+
T Consensus 129 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 129 SE----DEGRLWAESKG-----FKYFETSACTGEGVNE 157 (168)
T ss_pred CH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 11 22223333334 3689999999999986
No 100
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.73 E-value=2.9e-17 Score=151.93 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=94.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++........ .+ .+... .....+......+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~------------------------~t-----~~~~~-~~~~~~~~~~~~l 50 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYD------------------------PT-----IEDSY-RKQIEIDGEVCLL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccC------------------------Cc-----hhhhE-EEEEEECCEEEEE
Confidence 379999999999999999998533211000 00 00000 0111223334678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
.||||||+++|...+...++.+|++|+|+|++... .++.+..+...+.........| +|+|+||+|+........
T Consensus 51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~~- 125 (164)
T smart00173 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ---SFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVST- 125 (164)
T ss_pred EEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEcH-
Confidence 89999999999888888899999999999998642 1111111111222211112455 999999999874222111
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+..+.+..+ ++++++||++|.|+.+
T Consensus 126 ---~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 126 ---EEGKELARQWG-----CPFLETSAKERVNVDE 152 (164)
T ss_pred ---HHHHHHHHHcC-----CEEEEeecCCCCCHHH
Confidence 22333333333 4789999999999986
No 101
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.73 E-value=3.9e-17 Score=150.38 Aligned_cols=149 Identities=21% Similarity=0.184 Sum_probs=93.9
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|.+|+|||||+++|++...... ...+..|.+. ..+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~----------------------------~~~~t~g~~~----~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ----------------------------IIVPTVGFNV----ESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc----------------------------eecCccccce----EEEEECCEEEE
Confidence 589999999999999999984311000 0111122222 12345678899
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH-----HcCCCcEEEEEecccccccch
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-----SFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~-----~~~vp~vIVVINKiDl~~~~~ 422 (536)
||||||+..|...+..++..+|++|||+|++.... +.....++..++. ..++| ++||+||+|+....
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR------LVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 99999999998888888999999999999986421 1111112222222 12456 99999999987421
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+++. ..+....+....++++++||++|+|+.+
T Consensus 121 -~~~~~~----~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 121 -TAVKIT----QLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred -CHHHHH----HHhCCccccCceEEEEEeeCCCCCchHH
Confidence 112222 2221111112234689999999999986
No 102
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.73 E-value=8.3e-17 Score=149.95 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=97.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++...... ..+..|+...............+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA-----------------------------FVSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------------CCCceeeEEEEEEEEECCEEEEE
Confidence 6899999999999999999985321100 01112222222222222334679
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+.+|...+...++.+|++|+|+|++... .+ ....+.+..+... ..+|+|||+||+|+.......
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 125 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SF----NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS 125 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC
Confidence 99999999999888888899999999999998542 11 1223333333332 223499999999997432211
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. +....+.+.+++ +++++||++|.|+.+
T Consensus 126 ~----~~~~~~~~~~~~-----~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 126 S----ERGRQLADQLGF-----EFFEASAKENINVKQ 153 (165)
T ss_pred H----HHHHHHHHHcCC-----EEEEEECCCCCCHHH
Confidence 1 222333444444 689999999999986
No 103
>PRK00089 era GTPase Era; Reviewed
Probab=99.73 E-value=6.7e-17 Score=165.25 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=99.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.-.|+|+|.+|+|||||+|+|++....+.... .+.|.......+..++
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~------------------------------~~tt~~~i~~i~~~~~ 52 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRHRIRGIVTEDD 52 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCC------------------------------CCcccccEEEEEEcCC
Confidence 3556799999999999999999997654432221 1111111111123355
Q ss_pred eEEEEEeCCCcccc--------hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 344 YHVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 344 ~~i~LIDTPGh~df--------~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.+++||||||+... ...+...+..+|+++||+|+..+ +.....+++..+...+.| +|+|+||+
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--------~~~~~~~i~~~l~~~~~p-vilVlNKi 123 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--------IGPGDEFILEKLKKVKTP-VILVLNKI 123 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--------CChhHHHHHHHHhhcCCC-EEEEEECC
Confidence 78999999996442 33445567889999999999874 334556666666666677 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+... ...+.. .+..+.+..+ ..+++++||++|.|+.+
T Consensus 124 Dl~~~-~~~l~~---~~~~l~~~~~----~~~i~~iSA~~~~gv~~ 161 (292)
T PRK00089 124 DLVKD-KEELLP---LLEELSELMD----FAEIVPISALKGDNVDE 161 (292)
T ss_pred cCCCC-HHHHHH---HHHHHHhhCC----CCeEEEecCCCCCCHHH
Confidence 99732 222222 2333322233 24689999999999975
No 104
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.73 E-value=4.4e-17 Score=152.03 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=98.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+++|.+|+|||||+++|++..... ...+..|+........+.....
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT-----------------------------QLFHTIGVEFLNKDLEVDGHFV 54 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------CcCCceeeEEEEEEEEECCeEE
Confidence 46899999999999999999998421110 0011122222222223334456
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~ 421 (536)
.+.||||||++.|...+...++.+|++|+|+|.+.... +..+..+..+++..... .++| +|||+||+|+...
T Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 129 (170)
T cd04116 55 TLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPER- 129 (170)
T ss_pred EEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccccc-
Confidence 78899999999998888888999999999999986521 11122222222222211 2355 9999999998631
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... .+++..+++..++ .+++++||++|+|+.+
T Consensus 130 ~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 130 QVS----TEEAQAWCRENGD----YPYFETSAKDATNVAA 161 (170)
T ss_pred ccC----HHHHHHHHHHCCC----CeEEEEECCCCCCHHH
Confidence 112 2334444444442 3689999999999985
No 105
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=3.8e-17 Score=157.82 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=97.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-cCCeE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~ 345 (536)
++|+|+|.+|+|||||+++|++..... ...+..|.........+. .....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~-----------------------------~~~~t~~~d~~~~~v~~~~~~~~~ 51 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ-----------------------------HYKATIGVDFALKVIEWDPNTVVR 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceeEEEEEEEEEECCCCEEE
Confidence 479999999999999999998432100 001112222222222333 34577
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH---HcCCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~---~~~vp~vIVVINKiDl~~~~~ 422 (536)
+.||||||++.|...+...++.+|++|||+|.+.... +..+..+..++...+. ...+| +|||+||+|+.....
T Consensus 52 l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~ 127 (201)
T cd04107 52 LQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLA 127 (201)
T ss_pred EEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccccc
Confidence 8999999999998888888999999999999986421 1111111111111111 12455 999999999973212
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. .+++..+++..++ .+++++||++|+|+.+
T Consensus 128 ~~----~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e 158 (201)
T cd04107 128 KD----GEQMDQFCKENGF----IGWFETSAKEGINIEE 158 (201)
T ss_pred cC----HHHHHHHHHHcCC----ceEEEEeCCCCCCHHH
Confidence 22 2334455555553 3689999999999987
No 106
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.73 E-value=4.3e-17 Score=153.30 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=97.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|.+|+|||||+++|...... ...+..|.++. .+....
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~------------------------------~~~~t~g~~~~----~~~~~~ 52 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV------------------------------TTIPTVGFNVE----TVTYKN 52 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc------------------------------cccCCcccceE----EEEECC
Confidence 35689999999999999999999732110 00111122221 223367
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..|...+...++.+|++|||+|++... . +.....++..++.. .++| ++||+||+|+...
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~---s---~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 125 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---R---IDEARQELHRIINDREMRDAL-LLVFANKQDLPDA 125 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh---h---HHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC
Confidence 88999999999999888788889999999999998641 1 22222333333332 2455 9999999998632
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...++ +...+.........+.++++||++|+|+.+
T Consensus 126 --~~~~~----i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 126 --MKPHE----IQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred --CCHHH----HHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 11222 333322112222334789999999999986
No 107
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.72 E-value=1e-16 Score=147.95 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=99.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|++|+|||||+++|++..... ...+..|.+.......+......
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~v~~~~~~~~ 51 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE-----------------------------NQESTIGAAFLTQTVNLDDTTVK 51 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 3689999999999999999998533211 01122233333333344445677
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~ 422 (536)
+.||||||++.+...+...++.+|++|||+|+.... .+ ......+..+... .+| +|||+||+|+.....
T Consensus 52 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~-~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~ 123 (163)
T cd01860 52 FEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE------SF-EKAKSWVKELQRNASPNII-IALVGNKADLESKRQ 123 (163)
T ss_pred EEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH------HH-HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCc
Confidence 899999999998888777889999999999998642 11 2233333334333 344 899999999874222
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... +.+..+....+ ++++++||++|.|+.+
T Consensus 124 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 124 VST----EEAQEYADENG-----LLFFETSAKTGENVNE 153 (163)
T ss_pred CCH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 222 22333444444 3689999999999985
No 108
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=1e-16 Score=149.33 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=97.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|+.|+|||||+++|+..... . ...+..|.........+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--A---------------------------DCPHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--C---------------------------CCCcccceeEEEEEEEECCEEEEE
Confidence 78999999999999999999843110 0 001112222222222333345678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||++.|...+...++.+|++|||+|.+... .+ ......+..+... +. ++|||+||+|+......
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~----~~~~~~~~~~~~~~~~~~-~iiiv~nK~Dl~~~~~~ 125 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TY----NHLSSWLTDARNLTNPNT-VIFLIGNKADLEAQRDV 125 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCC-eEEEEEECcccccccCc
Confidence 99999999999888888899999999999998642 11 1222233323222 33 49999999999753222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. +++..+.+..+ ++++++||++|+|+.+
T Consensus 126 ~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 126 TY----EEAKQFADENG-----LLFLECSAKTGENVED 154 (166)
T ss_pred CH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 22 23333444444 3789999999999986
No 109
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.72 E-value=6.3e-17 Score=150.39 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=88.8
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe-EE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY-HV 346 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~-~i 346 (536)
+|+|+|++|+|||||+++|.+....+.. ..+.|.......+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-------------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-------------------------------YPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-------------------------------CCccccCCcceEEEcCCCCeE
Confidence 5999999999999999999853321110 011122222222334454 89
Q ss_pred EEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-----CCCcEEEEEec
Q 009378 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNK 414 (536)
Q Consensus 347 ~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-----~vp~vIVVINK 414 (536)
.||||||+.+ +...++..+..+|++|+|+|++.+. . ...........+... +.| +|+|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~--~----~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD--D----PVEDYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC--C----HHHHHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 9999999632 3334455566799999999998651 0 111222222223222 344 8999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+... .... ..+..++... ...+++++||++|.|+.+
T Consensus 124 ~Dl~~~--~~~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 124 IDLLDE--EELF---ELLKELLKEL----WGKPVFPISALTGEGLDE 161 (170)
T ss_pred hhcCCc--hhhH---HHHHHHHhhC----CCCCEEEEecCCCCCHHH
Confidence 998743 2221 2223333322 124689999999999986
No 110
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.72 E-value=1.2e-16 Score=147.40 Aligned_cols=149 Identities=12% Similarity=0.208 Sum_probs=95.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee--cCCe
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 344 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~~ 344 (536)
++|+|+|.+|+|||||+++|++..... ...+..+.........+. ....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 51 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-----------------------------DYKKTIGVDFLEKQIFLRQSDEDV 51 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCcEEEEEEEEEEEEcCCCCEE
Confidence 479999999999999999998432100 000111111111112222 3457
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccch
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~ 422 (536)
.+.||||||+++|...+...++.+|++|+|+|+.... . +... ...+..+.. .++| +|||+||+|+.....
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s---~~~l-~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 52 RLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE---S---FEAI-ESWKEKVEAECGDIP-MVLVQTKIDLLDQAV 123 (162)
T ss_pred EEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH---H---HHHH-HHHHHHHHHhCCCCC-EEEEEEChhcccccC
Confidence 7999999999999888888899999999999998642 1 1111 122222222 2556 999999999974322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... +++..+.+.+++ +++++||++|.|+.+
T Consensus 124 v~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 124 ITN----EEAEALAKRLQL-----PLFRTSVKDDFNVTE 153 (162)
T ss_pred CCH----HHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 222 233344444554 789999999999986
No 111
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.72 E-value=1.1e-16 Score=148.66 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=97.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||+++|++...... .....++........+......
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~ 52 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES-----------------------------YISTIGVDFKIRTIELDGKTIK 52 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEEEEEEECCEEEE
Confidence 37899999999999999999984321110 0011122222222223333467
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~ 422 (536)
+.||||||+.+|.......++.+|++|||+|++... . + ......+..+... ++| +|+|+||+|+.....
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s---~-~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~ 124 (166)
T cd01869 53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---S---F-NNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRV 124 (166)
T ss_pred EEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH---H---H-HhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccC
Confidence 899999999999888888889999999999998641 1 1 1222233333332 345 999999999864322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... +.+..+.+.++ ++++++||++|+|+.+
T Consensus 125 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 125 VDY----SEAQEFADELG-----IPFLETSAKNATNVEQ 154 (166)
T ss_pred CCH----HHHHHHHHHcC-----CeEEEEECCCCcCHHH
Confidence 222 22333444444 3789999999999986
No 112
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.72 E-value=1.2e-16 Score=148.44 Aligned_cols=151 Identities=18% Similarity=0.193 Sum_probs=95.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|++|+|||||+++|++....... .+..+.........+......+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~~~ 51 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------------------------KATIGADFLTKEVTVDDKLVTL 51 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc-----------------------------CCccceEEEEEEEEECCEEEEE
Confidence 47999999999999999999853211100 0111111111112222233567
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc------CCCcEEEEEeccccccc
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~------~vp~vIVVINKiDl~~~ 420 (536)
.|||+||+..|.......++.+|++|+|+|+..+.. +.....+...++... ++| +++|+||+|+...
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 124 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS------FESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEK 124 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCccCCCCce-EEEEEECcccccc
Confidence 899999999998888888999999999999986521 111222222223322 455 9999999999742
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... +.+..+++..+ .++++++||++|.|+.+
T Consensus 125 ~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 125 RQVST----KKAQQWCQSNG----NIPYFETSAKEAINVEQ 157 (172)
T ss_pred cccCH----HHHHHHHHHcC----CceEEEEECCCCCCHHH
Confidence 22122 22333444444 24789999999999975
No 113
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=7e-18 Score=174.66 Aligned_cols=239 Identities=36% Similarity=0.619 Sum_probs=192.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
...+++|.|+||.++||||+.. +..+.++.+.+.++++++...++|+|.|+|.++....+++++++++.....+...
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred cccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccce
Confidence 3567999999999999999998 6678899999999999999999999999999999999999999999988889999
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc--c
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--Y 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~--~ 420 (536)
.+.++++|.|||.+|..+|..+..++|+++++|.+..|.|++++.. .+|+++|..+...+++.++|+.+||||... +
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagisk-ngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccc-cchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 9999999999999999999999999999999999988889998875 489999999999999999999999999765 5
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCccccccc--chhhHHHHHHhcCCCCCCCCCCeeEE
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWY--KGPCLLDAIDSLRPPPREFSKPLLMP 498 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy--~g~tLle~L~~l~~~~~~~~~P~~~~ 498 (536)
...++.++.+..+.+.+..++++..+ -+++. .-|. .+.+|++.+.....+.... +.+++
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~n~~~~---------~~~~~--------~~~g~~~~t~iie~~~~v~~~~~~~--~~~vk 220 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGYNPAAV---------LQDVY--------KIGGIGVETGISEPGMDVTFAPSGV--TTEVK 220 (391)
T ss_pred cccchhhhheeeeeeeeccccCChhh---------hccce--------eecceeeeeeeccCccceecccccc--ccccc
Confidence 56777778777777777676654321 00110 1111 2356777775443333333 78888
Q ss_pred EEEEEEeC----CCeEEEEEEEEeeEEecCC
Q 009378 499 ICDVLKSQ----HGQVSACGKLEAGALRSGL 525 (536)
Q Consensus 499 I~d~~~~~----~G~v~v~G~V~sG~Lk~gd 525 (536)
..+++... .+.. ..|+.+.|...++.
T Consensus 221 ~~~~~~~a~s~~~p~~-~vG~~~~~v~v~~i 250 (391)
T KOG0052|consen 221 SVKVHHEAGSEDLPGD-NVGFNVKNVSVKDI 250 (391)
T ss_pred cEEEEeccCccCCCcc-eeeeecccCccCcc
Confidence 88887643 3344 46888887765544
No 114
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=5.3e-17 Score=170.42 Aligned_cols=133 Identities=29% Similarity=0.470 Sum_probs=109.8
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe--
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-- 339 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~-- 339 (536)
...+..|+.++.|+++|||||...|....+.|.... .|. +.++|....|+++|||+......+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aGe-----~Rf~DtRkDEQeR~iTIKStAISl~~ 79 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AGE-----TRFTDTRKDEQERGITIKSTAISLFF 79 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecc----------cCC-----ccccccccchhhcceEeeeeeeeehh
Confidence 345678899999999999999999997777665332 122 346899999999999997665543
Q ss_pred --------------ecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC
Q 009378 340 --------------DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (536)
Q Consensus 340 --------------~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v 405 (536)
+..++.|+|||.|||.+|..+.-.+++-.|++++|||+..| +.-|++..+.++..-.+
T Consensus 80 e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G--------vCVQTETVLrQA~~ERI 151 (842)
T KOG0469|consen 80 EMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG--------VCVQTETVLRQAIAERI 151 (842)
T ss_pred hhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc--------eEechHHHHHHHHHhhc
Confidence 22467899999999999999999999999999999999988 56799999988888777
Q ss_pred CcEEEEEeccccc
Q 009378 406 DQLIVAVNKMDAV 418 (536)
Q Consensus 406 p~vIVVINKiDl~ 418 (536)
.| ++++||+|+.
T Consensus 152 kP-vlv~NK~DRA 163 (842)
T KOG0469|consen 152 KP-VLVMNKMDRA 163 (842)
T ss_pred cc-eEEeehhhHH
Confidence 74 7899999964
No 115
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=9.9e-17 Score=148.11 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=97.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
+||+|+|++|+|||||+++|++....... .+..+.........+......+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l 51 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS-----------------------------QHTIGVEFGSKIIRVGGKRVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------------------CCceeeeEEEEEEEECCEEEEE
Confidence 48999999999999999999843221100 0111222222222333344678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||+..|...+...++.+|++|+|+|++.+.. + ......+..++. .++| ++||+||+|+......
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~ 123 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS------F-EALPTWLSDARALASPNIV-VILVGNKSDLADQREV 123 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccC
Confidence 999999999998888888999999999999987521 1 112222232222 3555 9999999999742222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. +.+..+++..+ ++++++||++|.|+.+
T Consensus 124 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 124 TF----LEASRFAQENG-----LLFLETSALTGENVEE 152 (161)
T ss_pred CH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 22 23334444444 3789999999999986
No 116
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=5.3e-17 Score=149.64 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=92.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|+..... ... . +..+-.. .....+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~----------------------~-----~t~~~~~-~~~~~~~~~~~~l 51 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKY----------------------D-----PTIEDSY-RKQIEVDGQQCML 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--ccc----------------------C-----CchhhhE-EEEEEECCEEEEE
Confidence 68999999999999999999843211 000 0 0000000 1111223334568
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
.||||||+++|...+...++.+|++|||+|.+... .+..+.....++.......++| +|||+||+|+........
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~- 126 (163)
T cd04136 52 EILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS---SFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVSR- 126 (163)
T ss_pred EEEECCCccccchHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceecH-
Confidence 89999999999888888889999999999998642 1111111111111111112455 999999999874222111
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+....+.+.++ ++++++||++|.|+.+
T Consensus 127 ---~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 127 ---EEGQALARQWG-----CPFYETSAKSKINVDE 153 (163)
T ss_pred ---HHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 12223333333 4789999999999986
No 117
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.72 E-value=1.3e-16 Score=149.29 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=98.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|+....... .....|.+.......+......+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 55 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDGKQIKL 55 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCccceeEEEEEEEECCEEEEE
Confidence 7899999999999999999984321110 01122333333333344445679
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||++.|.......++.+|++|||+|++... . + .....++..++.. ++| +|||+||+|+......
T Consensus 56 ~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~---s---~-~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~ 127 (168)
T cd01866 56 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---T---F-NHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV 127 (168)
T ss_pred EEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHH---H---H-HHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC
Confidence 99999999998888888889999999999998542 1 1 1222233333332 455 9999999999742222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. +++..++...++ +++++||++|+|+.+
T Consensus 128 ~~----~~~~~~~~~~~~-----~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 128 SY----EEGEAFAKEHGL-----IFMETSAKTASNVEE 156 (168)
T ss_pred CH----HHHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 22 223334444443 689999999999986
No 118
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=5.2e-17 Score=177.12 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=105.3
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|++|+|||||+++|++....+. ....|+|.+.....+...+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~------------------------------s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV------------------------------DDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCccCCcceEEEEECCE
Confidence 358999999999999999999995432111 12355555544445566778
Q ss_pred EEEEEeCCCccc---------chhh--HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009378 345 HVVVLDSPGHKD---------FVPN--MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 345 ~i~LIDTPGh~d---------f~~~--~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
.+.||||||..+ +... ...+++.+|++|||+|++.+. ..+....+..+...+.| +|||+|
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~--------s~~~~~~~~~~~~~~~p-iIiV~N 330 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPI--------SEQDQRVLSMVIEAGRA-LVLAFN 330 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEE
Confidence 899999999532 2211 134567899999999999873 34455566666667777 999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCC
Q 009378 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~ 463 (536)
|+|+.. ......+.+++...+.... ..+++++||++|.|+.++.
T Consensus 331 K~Dl~~--~~~~~~~~~~i~~~l~~~~----~~~~~~~SAk~g~gv~~lf 374 (472)
T PRK03003 331 KWDLVD--EDRRYYLEREIDRELAQVP----WAPRVNISAKTGRAVDKLV 374 (472)
T ss_pred CcccCC--hhHHHHHHHHHHHhcccCC----CCCEEEEECCCCCCHHHHH
Confidence 999974 2222333444444333222 2478999999999998743
No 119
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.72 E-value=3.8e-17 Score=149.57 Aligned_cols=139 Identities=20% Similarity=0.258 Sum_probs=92.2
Q ss_pred EEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEEEe
Q 009378 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (536)
Q Consensus 271 IvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~LID 350 (536)
|+|++|+|||||+++|++.... ....+++|.+.....+..++..+.|||
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-------------------------------VGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-------------------------------ccCCCCcccccceEEEeeCCeEEEEEE
Confidence 5899999999999999853211 011245555554455566678899999
Q ss_pred CCCcccchhh------Hhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 351 SPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 351 TPGh~df~~~------~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
|||+.++... +...+ ..+|++|+|+|+... .........+...++| +|+|+||+|+....
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~- 117 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL----------ERNLYLTLQLLELGLP-VVVALNMIDEAEKR- 117 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc----------hhHHHHHHHHHHcCCC-EEEEEehhhhcccc-
Confidence 9998776532 23333 489999999999853 1222333345556777 99999999997532
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+. .....+...++ ++++++||++|+|+.+
T Consensus 118 -~~~---~~~~~~~~~~~-----~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 118 -GIK---IDLDKLSELLG-----VPVVPTSARKGEGIDE 147 (158)
T ss_pred -cch---hhHHHHHHhhC-----CCeEEEEccCCCCHHH
Confidence 111 11223333334 3789999999999975
No 120
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.72 E-value=1.3e-16 Score=148.81 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=97.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||+++|++...... ..+..++........+......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~ 53 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-----------------------------FISTIGIDFKIRTIELDGKKIK 53 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-----------------------------cccCccceEEEEEEEECCEEEE
Confidence 48999999999999999999984321100 0111222222222223333467
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~ 422 (536)
+.||||||++.|.......++.+|++|+|+|++.+. .+. .....+..+.. .++| +|||+||+|+.....
T Consensus 54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~ 125 (167)
T cd01867 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEK---SFE----NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRV 125 (167)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHH---HHH----hHHHHHHHHHHhCCCCCc-EEEEEECcccccccC
Confidence 899999999998887878889999999999998642 111 22222322222 2445 999999999975322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+ ++..+.+.+++ +++++||++|.|+.+
T Consensus 126 ~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 126 VSKE----EGEALADEYGI-----KFLETSAKANINVEE 155 (167)
T ss_pred CCHH----HHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 2222 23334444443 789999999999986
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=5.6e-17 Score=149.84 Aligned_cols=147 Identities=22% Similarity=0.212 Sum_probs=93.8
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|++++|||||+++|...... . ..+..+.++ ..+...+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~----------------------------~~~t~~~~~----~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--T----------------------------TIPTIGFNV----ETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--C----------------------------cCCccCcCe----EEEEECCEEEE
Confidence 5899999999999999999732110 0 001111111 12344678899
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchhH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e~ 424 (536)
||||||+..|...+...+..+|++|+|+|++... .+.....++..++.. .+.| ++||+||+|+.... .
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~--~ 117 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD------RLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL--S 117 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC--C
Confidence 9999999999888888899999999999998631 011122233333332 2455 99999999987421 1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..++... +....+.....+++++||++|.|+.+
T Consensus 118 ~~~i~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 118 EAEISEK----LGLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred HHHHHHH----hCccccCCCcEEEEEeeccCCCCHHH
Confidence 2222222 21111222335799999999999986
No 122
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.72 E-value=8.6e-17 Score=151.43 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=96.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee----
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---- 340 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~---- 340 (536)
..++|+|+|.+|+|||||+++|++..... . .....|+........+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~--~---------------------------~~~t~~~~~~~~~~~~~~~~~ 53 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNP--K---------------------------FITTVGIDFREKRVVYNSSGP 53 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc--c---------------------------CCCccceEEEEEEEEEcCccc
Confidence 35899999999999999999998432110 0 00011111111111111
Q ss_pred ------cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEE
Q 009378 341 ------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVA 411 (536)
Q Consensus 341 ------~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVV 411 (536)
.....+.||||||++.|...+...++.+|++|+|+|++... .+ . ....++..+... ..+|+|||
T Consensus 54 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~-~~~~~~~~i~~~~~~~~~piiiv 126 (180)
T cd04127 54 GGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQ---SF---L-NVRNWMSQLQTHAYCENPDIVLC 126 (180)
T ss_pred cccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HH---H-HHHHHHHHHHHhcCCCCCcEEEE
Confidence 23467899999999999888888899999999999998642 11 1 112222223222 23449999
Q ss_pred EecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 412 INKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+||+|+........ +++..+.+..++ +++++||++|.|+.+
T Consensus 127 ~nK~Dl~~~~~v~~----~~~~~~~~~~~~-----~~~e~Sak~~~~v~~ 167 (180)
T cd04127 127 GNKADLEDQRQVSE----EQAKALADKYGI-----PYFETSAATGTNVEK 167 (180)
T ss_pred EeCccchhcCccCH----HHHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 99999974322221 233444444443 789999999999986
No 123
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=1.4e-16 Score=148.31 Aligned_cols=148 Identities=17% Similarity=0.095 Sum_probs=93.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++....... .+..+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~-----------------------------~~t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESY-----------------------------IPTIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCc-----------------------------CCcchheE-EEEEEECCEEEEE
Confidence 68999999999999999999843211000 00001111 1112233345678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEEeccccccc
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVINKiDl~~~ 420 (536)
.||||||+++|......++..+|++|+|+|.+.... + ......+..++. .++| +|||+||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s------~-~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS------L-EELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHK 123 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH------H-HHHHHHHHHHHHHhcCCCCCCC-EEEEEECcccccc
Confidence 999999999998877778889999999999986521 1 122333333333 2455 9999999999642
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..... .....+....+ ++++++||++|+|+.+
T Consensus 124 ~~v~~----~~~~~~~~~~~-----~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 124 REVSS----NEGAACATEWN-----CAFMETSAKTNHNVQE 155 (165)
T ss_pred CeecH----HHHHHHHHHhC-----CcEEEeecCCCCCHHH
Confidence 22111 11222233333 3789999999999986
No 124
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.72 E-value=8.9e-17 Score=148.24 Aligned_cols=148 Identities=19% Similarity=0.172 Sum_probs=96.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++..... ...+..+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-----------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 579999999999999999998432211 011223333332323333345679
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEecccccccch
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~~~~~ 422 (536)
.||||||+..|.......++.+|++|+|+|++.... +..... ++..+.. .++| ++||+||+|+.....
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~-~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~ 123 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT------FTNLET-WLNELETYSTNNDIV-KMLVGNKIDKENREV 123 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH------HHhHHH-HHHHHHHhCCCCCCc-EEEEEECCccccccc
Confidence 999999999988777788899999999999986421 111222 2222222 3455 899999999973221
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. +....+....+ ++++++||++|+|+.+
T Consensus 124 -~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 124 -TR----EEGLKFARKHN-----MLFIETSAKTRDGVQQ 152 (161)
T ss_pred -CH----HHHHHHHHHcC-----CEEEEEecCCCCCHHH
Confidence 11 22333333333 3789999999999986
No 125
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.72 E-value=1.3e-16 Score=144.59 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=99.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|.+++|||||+++|++...... ..+..+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-----------------------------YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-----------------------------cCCceeeeeEEEEEEECCEEEEE
Confidence 4799999999999999999985432211 01122333333333333345788
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~e 423 (536)
.|||+||+..+.......+..+|++|+|+|+.... .+ ......+..+... +.| ++||+||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~-~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~ 123 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE------SF-ENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQV 123 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH------HH-HHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccc
Confidence 99999999999888888899999999999998631 11 2222334334333 355 9999999999622222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. +.+..+....+ ++++++||++|.|+.+
T Consensus 124 ~~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 124 ST----EEAQQFAKENG-----LLFFETSAKTGENVEE 152 (159)
T ss_pred cH----HHHHHHHHHcC-----CeEEEEecCCCCCHHH
Confidence 22 33334444333 4789999999999986
No 126
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=9.9e-17 Score=172.35 Aligned_cols=142 Identities=25% Similarity=0.288 Sum_probs=106.1
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|++|+|||||+|+|++....+.. ..+|+|.+.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~------------------------------~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS------------------------------DTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec------------------------------CCCCcccCceEEEEEECCeEEE
Confidence 4899999999999999999964322211 2256666666666777888999
Q ss_pred EEeCCCc--------ccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009378 348 VLDSPGH--------KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 348 LIDTPGh--------~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
||||||+ ..+...+..++..+|++|||+|+..+ +.....++..+++..+.| +|+|+||+|+..
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~--------~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~ 121 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG--------LTPEDEEIAKWLRKSGKP-VILVANKIDGKK 121 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHhCCC-EEEEEECccCCc
Confidence 9999996 33455567778899999999999976 445667778888888887 999999999874
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... .. .+..+++. +++++||++|.|+.+
T Consensus 122 ~~~~-----~~----~~~~lg~~----~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 122 EDAV-----AA----EFYSLGFG----EPIPISAEHGRGIGD 150 (429)
T ss_pred cccc-----HH----HHHhcCCC----CeEEEeCCcCCChHH
Confidence 3211 11 12344542 579999999999976
No 127
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.71 E-value=7.4e-17 Score=149.59 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=93.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|+.... .... .+..+.+.. ....+......+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~---------------------------~~t~~~~~~-~~~~~~~~~~~l 51 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKY---------------------------DPTIEDSYR-KQVEVDGQQCML 51 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--Cccc---------------------------CCcchheEE-EEEEECCEEEEE
Confidence 6899999999999999999983211 0000 000111111 111223335667
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||+..|...+...++.+|++|||+|.+... .+ .....+...+... .++| +|||+||+|+......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 124 (164)
T cd04175 52 EILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS---TF---NDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV 124 (164)
T ss_pred EEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEE
Confidence 89999999999988888999999999999987542 11 1122222222222 2455 9999999999743221
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ .+..+.+.++ ++++++||++|.|+.+
T Consensus 125 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 125 GKE----QGQNLARQWG-----CAFLETSAKAKINVNE 153 (164)
T ss_pred cHH----HHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 211 2223333344 3789999999999986
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.71 E-value=1.5e-16 Score=147.78 Aligned_cols=147 Identities=21% Similarity=0.231 Sum_probs=89.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|++|+|||||+++|++....+ ....+.|.......+...+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-------------------------------APYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc-------------------------------CCCCCcccceeEEEEccCceEE
Confidence 479999999999999999998532110 0112333333333445567899
Q ss_pred EEEeCCCcccch--------hhHhhh-cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecc
Q 009378 347 VVLDSPGHKDFV--------PNMISG-ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKM 415 (536)
Q Consensus 347 ~LIDTPGh~df~--------~~~~~~-l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKi 415 (536)
+||||||+.+.. ...... ...+|++|||+|++.... + .+. .....+..+... +.| +|+|+||+
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~-~~~-~~~~~~~~l~~~~~~~p-vilv~NK~ 123 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---Y-SLE-EQLSLFEEIKPLFKNKP-VIVVLNKI 123 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---c-chH-HHHHHHHHHHhhcCcCC-eEEEEEcc
Confidence 999999974311 111111 233689999999986421 1 011 122334444443 555 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+... ..+.+ +..+.+. ..++++++||++|.|+.+
T Consensus 124 Dl~~~--~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 124 DLLTF--EDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCch--hhHHH----HHHhhhh-----ccCceEEEEecccCCHHH
Confidence 99742 22222 2222221 234789999999999986
No 129
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.71 E-value=1.2e-16 Score=148.78 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=94.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|..++|||||+++|...... . ..+..|..+ ..+......+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~----------------------------~~pt~g~~~----~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--T----------------------------TIPTIGFNV----ETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c----------------------------cCCCCCcce----EEEEECCEEE
Confidence 47999999999999999999632110 0 001112211 1233467889
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+..|...+...++.+|++|||+|++... .+.....+...++.. ...+|++||+||+|+.+...
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-- 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-- 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC--
Confidence 99999999999888888899999999999998531 122222223333322 12234999999999864211
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+++... +....+....+.++++||++|+|+.+
T Consensus 119 ~~~i~~~----~~~~~~~~~~~~~~~~Sak~g~gv~~ 151 (159)
T cd04150 119 AAEVTDK----LGLHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred HHHHHHH----hCccccCCCCEEEEEeeCCCCCCHHH
Confidence 1222222 21112223345678999999999986
No 130
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.71 E-value=1.6e-16 Score=149.69 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=95.1
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+++|..|+|||||+++|+..... . ...+..+.........+......+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~---------------------------~~~~t~~~~~~~~~~~~~~~~~~l~ 52 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--K---------------------------NYKATIGVDFEMERFEILGVPFSLQ 52 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C---------------------------CCCCceeeEEEEEEEEECCEEEEEE
Confidence 6999999999999999999843210 0 0001112222222222233346799
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH-HHc--CCCcEEEEEecccccccchhH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll-~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
||||||+++|...+...++.+|++|||+|++... . +. ....++..+ +.. ..+++|+|+||+|+.....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s---~~-~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~-- 123 (170)
T cd04108 53 LWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA---S---LE-HTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ-- 123 (170)
T ss_pred EEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH---H---HH-HHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--
Confidence 9999999999888888899999999999997531 1 21 222333322 222 1234899999999864321
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+....+.+.++. +++++||++|.|+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~-----~~~e~Sa~~g~~v~~ 155 (170)
T cd04108 124 YALMEQDAIKLAAEMQA-----EYWSVSALSGENVRE 155 (170)
T ss_pred ccccHHHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 11122333344444443 689999999999986
No 131
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.71 E-value=2.1e-16 Score=145.53 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=95.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|++|+|||||+++|++..... ...+..+.........+......+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE-----------------------------QYKSTIGVDFKTKTIEVDGKRVKL 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEEE
Confidence 589999999999999999998432211 001112222222222232233678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
.|||+||+..|.......++.+|++|+|+|+..... +.... ..+..+.. .++| +++|+||+|+......
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~-~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~ 123 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES------FENLK-NWLKELREYADPNVV-IMLVGNKSDLEDQRQV 123 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH------HHHHH-HHHHHHHHhCCCCCe-EEEEEEchhcccccCC
Confidence 999999999998888888999999999999986421 11111 12222222 2355 9999999998742221
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ ....+.+..++ +++++||++|.|+.+
T Consensus 124 ~~~----~~~~~~~~~~~-----~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 124 SRE----EAEAFAEEHGL-----PFFETSAKTNTNVEE 152 (164)
T ss_pred CHH----HHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 222 22333444444 689999999999986
No 132
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=1.8e-16 Score=151.98 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=95.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|+........ .....+.+.......+......+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 52 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGN----------------------------FIATVGIDFRNKVVTVDGVKVKL 52 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccC----------------------------cCCcccceeEEEEEEECCEEEEE
Confidence 47999999999999999999843211100 00011122211122233345678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||+..|.......++.+|++|+|+|++... . +. .....+..+... ++| +|||+||+|+......
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s---~~-~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~ 124 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKA---S---FD-NIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVV 124 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHH---H---HH-HHHHHHHHHHHhCCCCCc-EEEEEEcccchhcccc
Confidence 99999999998887778889999999999998642 1 11 122233333333 445 9999999999642211
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. .++..+.+.++ ++++++||++|+|+.+
T Consensus 125 ~~----~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 125 KR----EDGERLAKEYG-----VPFMETSAKTGLNVEL 153 (191)
T ss_pred CH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 11 22333444444 3789999999999986
No 133
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.71 E-value=1.7e-16 Score=151.57 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=95.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++...... ......|..+......+......+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~----------------------------~~~~t~~~~~~~~~~~~~~~~~~l 52 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG----------------------------PYQNTIGAAFVAKRMVVGERVVTL 52 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc----------------------------CcccceeeEEEEEEEEECCEEEEE
Confidence 4799999999999999999984321100 001112222222222233334567
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+.+|.......++.+|++|||+|++... . +. .....+..++.. ++| +|||+||+|+.......
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s---~~-~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~ 124 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSS---S---FE-RAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSL 124 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHH---H---HH-HHHHHHHHHHhcCCCCC-EEEEEEccccccccccc
Confidence 89999999888777777788999999999997541 1 11 122333333333 455 99999999986432111
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.......+..+....+ ++++++||++|+|+.+
T Consensus 125 ~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 125 RQVDFHDVQDFADEIK-----AQHFETSSKTGQNVDE 156 (193)
T ss_pred CccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 0101123344444443 3689999999999986
No 134
>PTZ00369 Ras-like protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=152.65 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+..++|+|+|.+|+|||||+++|++....-. ..+..+.++ .....++...
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~ 52 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDE-----------------------------YDPTIEDSY-RKQCVIDEET 52 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------------------cCCchhhEE-EEEEEECCEE
Confidence 4568999999999999999999985321100 000111111 1112233345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.||||||+++|...+..+++.+|++|+|+|++... .+..+.....++.......++| +|||+||+|+......
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i 128 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS---SFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQV 128 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc
Confidence 67889999999999988888899999999999998652 1111211122222111112455 9999999998642211
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. .....+.+.++ ++++++||++|.||.+
T Consensus 129 ~~----~~~~~~~~~~~-----~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 129 ST----GEGQELAKSFG-----IPFLETSAKQRVNVDE 157 (189)
T ss_pred CH----HHHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 11 12223333333 3789999999999986
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=1.3e-16 Score=143.47 Aligned_cols=150 Identities=24% Similarity=0.288 Sum_probs=94.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC--e
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~ 344 (536)
+||+++|++|+|||||+++|+... . ..+..++++.+.....+...+ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F------------------------------ITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C------------------------------cCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999998532 1 111223444444444344455 7
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccc-hhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT-AKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~-~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
.+.+|||||+.++..........++.+++++|...... .+.. ...+......++.. +.| ++||+||+|+....
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~--~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVL--DVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeeh--hhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch--
Confidence 89999999999886655555556666666666543210 1111 11233333333322 566 99999999997532
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+...+...+...+. .+++++||++|.|+.+
T Consensus 125 ----~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 125 ----LKTHVAFLFAKLNG----EPIIPLSAETGKNIDS 154 (161)
T ss_pred ----hhHHHHHHHhhccC----CceEEeecCCCCCHHH
Confidence 23344444444443 3589999999999986
No 136
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.70 E-value=1.6e-16 Score=149.92 Aligned_cols=150 Identities=23% Similarity=0.192 Sum_probs=96.9
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+++|++|+|||||+++|+...... ..+..|.+ ...+.....
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~------------------------------~~~t~~~~----~~~~~~~~~ 59 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH------------------------------TSPTIGSN----VEEIVYKNI 59 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC------------------------------cCCccccc----eEEEEECCe
Confidence 35789999999999999999998421100 01111221 122444678
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~ 421 (536)
.+.||||||+..|...+...+..+|++|||+|++... .+.....+...++.. .++| ++||+||+|+...
T Consensus 60 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~------~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~- 131 (174)
T cd04153 60 RFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE------RLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA- 131 (174)
T ss_pred EEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC-
Confidence 8999999999999888888889999999999998642 122222233333332 2345 9999999998642
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++.+.+. ........++++++||++|+||.+
T Consensus 132 -~~~~~i~~~l~----~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 132 -MTPAEISESLG----LTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred -CCHHHHHHHhC----cccccCCceEEEecccCCCCCHHH
Confidence 11222322221 111122345789999999999986
No 137
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=5.8e-18 Score=174.32 Aligned_cols=137 Identities=33% Similarity=0.428 Sum_probs=117.4
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
...+..||+|+.|.++||||...||++..|.+... ...++| ..++|....|+++|||+..+.+.|+|
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~---------g~vddg----dtvtdfla~erergitiqsaav~fdw 99 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSA---------GDVDDG----DTVTDFLAIERERGITIQSAAVNFDW 99 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcc---------cccCCC----chHHHHHHHHHhcCceeeeeeeeccc
Confidence 34567899999999999999999999887765332 111222 14678888999999999999999999
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
+++.+++||||||.+|.-+..+.++..|++|.|+|++.| ++.|+..+.++...+++| -++.+||||+..+
T Consensus 100 kg~rinlidtpghvdf~leverclrvldgavav~dasag--------ve~qtltvwrqadk~~ip-~~~finkmdk~~a 169 (753)
T KOG0464|consen 100 KGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG--------VEAQTLTVWRQADKFKIP-AHCFINKMDKLAA 169 (753)
T ss_pred ccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC--------cccceeeeehhccccCCc-hhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999998 577888888888899998 6899999998753
No 138
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.70 E-value=2.7e-16 Score=145.76 Aligned_cols=150 Identities=18% Similarity=0.251 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||+++|++....... .+..+.+.......+......
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~~ 53 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-----------------------------KSTIGVEFATRSIQIDGKTIK 53 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------------------CCccceEEEEEEEEECCEEEE
Confidence 368999999999999999999843211100 111222222222223333457
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~ 422 (536)
+.||||||+..|...+...+..++++|+|+|++... .+. .....+..+... ++| ++||+||+|+.....
T Consensus 54 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~ 125 (165)
T cd01868 54 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQ---TFE----NVERWLKELRDHADSNIV-IMLVGNKSDLRHLRA 125 (165)
T ss_pred EEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhCCCCCe-EEEEEECcccccccc
Confidence 899999999998888888889999999999998542 111 122223333222 344 999999999874322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+ ++..+....+ ++++++||++|.|+.+
T Consensus 126 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 126 VPTE----EAKAFAEKNG-----LSFIETSALDGTNVEE 155 (165)
T ss_pred CCHH----HHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 2222 2333333333 3789999999999985
No 139
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=4.1e-16 Score=142.32 Aligned_cols=150 Identities=23% Similarity=0.234 Sum_probs=96.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
...+|+++|.+|+|||||+++|++....+... ....+.......+...+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccC------------------------------CCCceeceEEEEEEcCCe
Confidence 46789999999999999999998643221111 011111112222344567
Q ss_pred EEEEEeCCCcccch--------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 345 ~i~LIDTPGh~df~--------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.+.||||||..... ......+..+|++++|+|+... ...........+...+.| ++||+||+|
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~nK~D 122 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP--------IGEGDEFILELLKKSKTP-VILVLNKID 122 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc--------cCchHHHHHHHHHHhCCC-EEEEEEchh
Confidence 89999999965432 2334557889999999999875 123444555566666677 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... .....+....+.. ..+ ..+++++|++++.|+.+
T Consensus 123 l~~~-~~~~~~~~~~~~~---~~~----~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 123 LVKD-KEDLLPLLEKLKE---LGP----FAEIFPISALKGENVDE 159 (168)
T ss_pred cccc-HHHHHHHHHHHHh---ccC----CCceEEEEeccCCChHH
Confidence 9742 2232333333222 221 24689999999999975
No 140
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=1.4e-16 Score=173.80 Aligned_cols=144 Identities=27% Similarity=0.325 Sum_probs=103.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||+|+|++....+ .....|+|.+.....+.+.+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~~~ 87 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNGRR 87 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECCcE
Confidence 4689999999999999999999543211 1223577777666667778888
Q ss_pred EEEEeCCCccc--------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009378 346 VVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 346 i~LIDTPGh~d--------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
+.||||||+.. +...+..++..+|++|||+|++.+. .....++..+++..+.| +|+|+||+|+
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~--------s~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGA--------TATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 99999999753 3344556788899999999999763 23345566677777777 9999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ ... +...++. ..+++||++|.|+.+
T Consensus 159 ~~~~~~--------~~~-~~~~g~~----~~~~iSA~~g~gi~e 189 (472)
T PRK03003 159 ERGEAD--------AAA-LWSLGLG----EPHPVSALHGRGVGD 189 (472)
T ss_pred Cccchh--------hHH-HHhcCCC----CeEEEEcCCCCCcHH
Confidence 642111 111 1234543 237999999999986
No 141
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.70 E-value=3.5e-16 Score=150.64 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=99.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|..++|||||+.+|...... .+.....|.........+.....
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~i~~~~~~~ 55 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-----------------------------SPYGYNMGIDYKTTTILLDGRRV 55 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCcceeEEEEEEEEECCEEE
Confidence 4589999999999999999999842110 00011122222222223333457
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccch
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~ 422 (536)
.+.||||||+++|...+...++.+|++|||+|.+... .|..+ ...+..+.. -++| +|||.||+|+.....
T Consensus 56 ~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~---Sf~~~----~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~ 127 (189)
T cd04121 56 KLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRW---SFDGI----DRWIKEIDEHAPGVP-KILVGNRLHLAFKRQ 127 (189)
T ss_pred EEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHHHH----HHHHHHHHHhCCCCC-EEEEEECccchhccC
Confidence 8899999999999988888889999999999998652 22222 222222222 2444 999999999964322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. .+++..+.+..++ +++++||++|.||.+
T Consensus 128 v~----~~~~~~~a~~~~~-----~~~e~SAk~g~~V~~ 157 (189)
T cd04121 128 VA----TEQAQAYAERNGM-----TFFEVSPLCNFNITE 157 (189)
T ss_pred CC----HHHHHHHHHHcCC-----EEEEecCCCCCCHHH
Confidence 22 2334455555554 789999999999987
No 142
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.5e-16 Score=148.71 Aligned_cols=161 Identities=17% Similarity=0.214 Sum_probs=110.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+++|..++|||||+-|+......- ..++.-|-.+-.....+....
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e-----------------------------~~e~TIGaaF~tktv~~~~~~ 53 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHE-----------------------------NIEPTIGAAFLTKTVTVDDNT 53 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccc-----------------------------ccccccccEEEEEEEEeCCcE
Confidence 457899999999999999999998321110 112223333333333333445
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEE--EEEecccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI--VAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vI--VVINKiDl~~~~ 421 (536)
..|.||||+|+++|......+++.|+++|+|+|.++-. . +. ..+..+.-|....-|.+| ||.||+|+....
T Consensus 54 ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~---S---F~-~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEE---S---FE-KAKNWVKELQRQASPNIVIALVGNKADLLERR 126 (200)
T ss_pred EEEEEEEcCCcccccccccceecCCcEEEEEEecccHH---H---HH-HHHHHHHHHHhhCCCCeEEEEecchhhhhhcc
Confidence 78889999999999999999999999999999999642 2 22 233333333333224454 489999998643
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 484 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l 484 (536)
...+ ++...+....|+ .|+++||++|.|+.+ ||..|...
T Consensus 127 ~V~~----~ea~~yAe~~gl-----l~~ETSAKTg~Nv~~---------------if~~Ia~~ 165 (200)
T KOG0092|consen 127 EVEF----EEAQAYAESQGL-----LFFETSAKTGENVNE---------------IFQAIAEK 165 (200)
T ss_pred cccH----HHHHHHHHhcCC-----EEEEEecccccCHHH---------------HHHHHHHh
Confidence 4443 445566666665 799999999999986 88888543
No 143
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.70 E-value=1.5e-16 Score=144.82 Aligned_cols=137 Identities=25% Similarity=0.261 Sum_probs=91.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|++|+|||||+++|++....... ..++++.......+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS------------------------------DIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc------------------------------CCCCCccceEEEEEEeCCEEE
Confidence 47999999999999999999854321111 123444444444555667889
Q ss_pred EEEeCCCcccchh--------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH-HcCCCcEEEEEecccc
Q 009378 347 VVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDA 417 (536)
Q Consensus 347 ~LIDTPGh~df~~--------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~-~~~vp~vIVVINKiDl 417 (536)
++|||||+.++.. .....+..+|++++|+|+.... .... ..++. ..+.| +|+|+||+|+
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~--------~~~~---~~~~~~~~~~~-vi~v~nK~D~ 119 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL--------DEED---LEILELPADKP-IIVVLNKSDL 119 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC--------CHHH---HHHHHhhcCCC-EEEEEEchhc
Confidence 9999999766532 2345667899999999999642 1111 12222 34455 9999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... .. .. .....+++++||+++.|+.+
T Consensus 120 ~~~~--~~---------~~-----~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 120 LPDS--EL---------LS-----LLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred CCcc--cc---------cc-----ccCCCceEEEECCCCCCHHH
Confidence 8431 11 11 11234789999999999975
No 144
>PLN03118 Rab family protein; Provisional
Probab=99.70 E-value=2.4e-16 Score=153.56 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=98.6
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....++|+|+|.+|+|||||+++|++.... ...+..|.........+...
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~ 60 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE------------------------------DLAPTIGVDFKIKQLTVGGK 60 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC------------------------------CcCCCceeEEEEEEEEECCE
Confidence 345689999999999999999999843210 01112233333333333334
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEeccccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~ 418 (536)
...+.||||||++.|...+..+++.+|++|||+|++... .+ ..........+.. .+.| +|||+||+|+.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~---sf---~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~ 133 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE---TF---TNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRE 133 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 567899999999999888888899999999999998642 11 1111111122222 2345 89999999987
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....... +....+....+ ++++++||++|.|+.+
T Consensus 134 ~~~~i~~----~~~~~~~~~~~-----~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 134 SERDVSR----EEGMALAKEHG-----CLFLECSAKTRENVEQ 167 (211)
T ss_pred ccCccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 4322111 22223333333 3689999999999986
No 145
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.70 E-value=1e-16 Score=152.64 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=96.0
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe-ecCC
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKN 343 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~ 343 (536)
+.++|+++|.+|+|||||+++|++..... ..+..|++........ ....
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~ 51 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN------------------------------TVPTKGFNTEKIKVSLGNSKG 51 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCC------------------------------cCCccccceeEEEeeccCCCc
Confidence 46899999999999999999998432110 0011222221111111 2345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.||||||++.|...+...++.+|++|+|+|++... .+.....+..++.......+.| +|||+||+|+... .
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~--~ 125 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVE---RMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA--L 125 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc--C
Confidence 78999999999998887777888999999999998641 1111111222222333334566 9999999998632 1
Q ss_pred HHHHHHHHHHHHHHHcCCC-CCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~-~~~i~vipvSA~~GenI~e 461 (536)
..++ +..++....+. ...++++++||++|+|+.+
T Consensus 126 ~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 126 SVSE----VEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred CHHH----HHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 1111 22222111111 1234689999999999986
No 146
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.70 E-value=3.3e-16 Score=152.42 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=95.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
+.|+++|..|+|||||+.+++..... . ......|+........+......+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~--~---------------------------~~~~Ti~~~~~~~~i~~~~~~v~l 51 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFC--E---------------------------ACKSGVGVDFKIKTVELRGKKIRL 51 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCC--C---------------------------cCCCcceeEEEEEEEEECCEEEEE
Confidence 36999999999999999999842110 0 001112222222222233334778
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~e 423 (536)
.||||+|++.|...+..+++.+|++|||+|++... .|+.+ ...+..+... ++| +|||+||+|+......
T Consensus 52 ~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~---Sf~~l----~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v 123 (202)
T cd04120 52 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE---TFDDL----PKWMKMIDKYASEDAE-LLLVGNKLDCETDREI 123 (202)
T ss_pred EEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHH---HHHHH----HHHHHHHHHhCCCCCc-EEEEEECccccccccc
Confidence 99999999999988888999999999999999752 22222 2223333332 345 9999999998642221
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ......+.+.. ..+.|+++||++|+||.+
T Consensus 124 ~----~~~~~~~a~~~----~~~~~~etSAktg~gV~e 153 (202)
T cd04120 124 S----RQQGEKFAQQI----TGMRFCEASAKDNFNVDE 153 (202)
T ss_pred C----HHHHHHHHHhc----CCCEEEEecCCCCCCHHH
Confidence 1 12222333332 123689999999999987
No 147
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.70 E-value=4e-16 Score=150.71 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=97.2
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|..|+|||||+++|++..... ...+..|+.+......+.....
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 55 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-----------------------------SYITTIGVDFKIRTVEINGERV 55 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCccccceeEEEEEEECCEEE
Confidence 35899999999999999999998432100 0011122222222222223345
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEecccccccchh
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINKiDl~~~~~e 423 (536)
.+.||||||++.|...+...++.+|++|||+|++... . +. .....+..+.. ....++|||+||+|+......
T Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~---s---~~-~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~ 128 (199)
T cd04110 56 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---S---FV-NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV 128 (199)
T ss_pred EEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH---H---HH-HHHHHHHHHHHhCCCCCEEEEEECccccccccc
Confidence 7889999999999888888899999999999998642 1 11 22223333332 233348999999998743211
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ......+.+..+ ++++++||++|.||.+
T Consensus 129 ~----~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 129 E----TEDAYKFAGQMG-----ISLFETSAKENINVEE 157 (199)
T ss_pred C----HHHHHHHHHHcC-----CEEEEEECCCCcCHHH
Confidence 1 123333444444 3789999999999986
No 148
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.70 E-value=1.6e-16 Score=147.05 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=92.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||++++++....... ..+ .+ ........+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~------------------------~~t-----~~-~~~~~~~~~~~~~~~l 51 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY------------------------DPT-----IE-DFYRKEIEVDSSPSVL 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------------CCc-----hh-heEEEEEEECCEEEEE
Confidence 68999999999999999999843211000 000 00 0011112222233568
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEecccccccch
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~~~~~ 422 (536)
.||||||++.|...+...++.+|++|+|+|.+... . +... .+.+..+.. .++| ++||+||+|+.....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s---~~~~-~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~ 123 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ---T---FQDI-KPMRDQIVRVKGYEKVP-IILVGNKVDLESERE 123 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCCHH---H---HHHH-HHHHHHHHHhcCCCCCC-EEEEEECccchhcCc
Confidence 89999999999888888889999999999998642 1 1112 222222222 3555 999999999864222
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... .....+.+.++ ++++++||++|.|+.+
T Consensus 124 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 124 VSS----AEGRALAEEWG-----CPFMETSAKSKTMVNE 153 (163)
T ss_pred cCH----HHHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 111 11222333333 3789999999999986
No 149
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.70 E-value=2e-16 Score=150.81 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=97.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+++|..++|||||+++|...... ...+..|..+ ..++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~------------------------------~~~pt~g~~~----~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------------------------TTIPTIGFNV----ETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc------------------------------cccCCcceeE----EEEEECC
Confidence 45689999999999999999999731100 0011122222 1244567
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..|...+...++.+|++|||+|++... .+.....+...++.. .++| ++||+||+|+...
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~------s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD------RVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH------HHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 88999999999999888888899999999999998642 121122222222221 2344 9999999998743
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ..++ +...+.-..+....+.++++||++|+|+.+
T Consensus 134 ~--~~~~----~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 134 M--NAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred C--CHHH----HHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 1 2222 222221112222334567899999999986
No 150
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=1.2e-16 Score=147.04 Aligned_cols=146 Identities=21% Similarity=0.187 Sum_probs=95.3
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|.+|+|||||+++|++.... ......+++. ..+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~------------------------------~~~~t~~~~~----~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV------------------------------TTIPTIGFNV----ETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC------------------------------CCCCCcCcce----EEEEECCEEEE
Confidence 5899999999999999999854310 0011112222 22334578899
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHH-HHHH---HcCCCcEEEEEecccccccchh
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIR---SFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l-~ll~---~~~vp~vIVVINKiDl~~~~~e 423 (536)
||||||+..+.......+..+|++|+|+|+..+. .+ ......+ .++. ..+.| +|+|+||+|+... .
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~------~~-~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~--~ 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE------RI-EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGA--L 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHH------HH-HHHHHHHHHHHhCcccCCCc-EEEEeeccCCccc--c
Confidence 9999999998877778889999999999998641 01 1122222 2222 23455 9999999999743 2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+++.+. +.........++++++||++|.|+.+
T Consensus 117 ~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 117 SVSELIEK----LGLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred CHHHHHHh----hChhhccCCcEEEEEeeCCCCCCHHH
Confidence 22333332 22221223456899999999999986
No 151
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=1.2e-16 Score=147.10 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=93.0
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|.+|+|||||+++|++..... ..+..+.+.. ...+ .....+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~------------------------------~~~t~~~~~~--~~~~-~~~~~l~ 47 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT------------------------------TIPTVGFNVE--MLQL-EKHLSLT 47 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc------------------------------ccCccCcceE--EEEe-CCceEEE
Confidence 48999999999999999998532110 0011122211 1111 1357899
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchhH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e~ 424 (536)
||||||+..+...+...+..+|++|||+|+.... . +.....++..+++. .+.| ++||+||+|+... ..
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~---~---~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~--~~ 118 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA---R---LDESQKELKHILKNEHIKGVP-VVLLANKQDLPGA--LT 118 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH---H---HHHHHHHHHHHHhchhhcCCC-EEEEEECcccccC--cC
Confidence 9999999998888888889999999999998652 1 11222222233322 3555 9999999998632 11
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+++...+. +..+. ....++++++||++|+|+.+
T Consensus 119 ~~~i~~~~~--~~~~~-~~~~~~~~~~Sa~~~~gv~~ 152 (160)
T cd04156 119 AEEITRRFK--LKKYC-SDRDWYVQPCSAVTGEGLAE 152 (160)
T ss_pred HHHHHHHcC--CcccC-CCCcEEEEecccccCCChHH
Confidence 222222221 01111 11235789999999999986
No 152
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=2.5e-16 Score=148.97 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=95.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+++|..|+|||||+++|..... . ...+..|..+ ..+....
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~--~----------------------------~~~~t~~~~~----~~~~~~~ 56 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGES--V----------------------------TTIPTIGFNV----ETVTYKN 56 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC--C----------------------------CcCCccccce----EEEEECC
Confidence 3468999999999999999999962110 0 0011112211 1233467
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+..+...+...++.+|++|||+|++... .+.....++..++.. .++| ++||+||+|+...
T Consensus 57 ~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~------s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 129 (175)
T smart00177 57 ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD------RIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDA 129 (175)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH------HHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC
Confidence 88999999999999888888899999999999998541 122222222223222 2344 9999999998642
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ..+++.+.+. ........+.++++||++|+|+.+
T Consensus 130 ~--~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 130 M--KAAEITEKLG----LHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred C--CHHHHHHHhC----ccccCCCcEEEEEeeCCCCCCHHH
Confidence 1 1122222221 111222345678999999999986
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.69 E-value=2.2e-16 Score=151.98 Aligned_cols=153 Identities=23% Similarity=0.260 Sum_probs=92.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+|+|.+|+|||||+++|++.... ....+|+|....... ..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-------------------------------~~~~~~~t~~~~~~~--~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-------------------------------VGKRPGVTRKPNHYD--WG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCceeeCceEEe--ec--
Confidence 4578999999999999999999853211 112245555433322 22
Q ss_pred EEEEEeCCCc-----------ccchhhHh----hhcccCCeEEEEeecCCCccc-ccc--cchhhHHHHHHHHHHHcCCC
Q 009378 345 HVVVLDSPGH-----------KDFVPNMI----SGATQSDAAILVIDASVGSFE-VGM--NTAKGLTREHAQLIRSFGVD 406 (536)
Q Consensus 345 ~i~LIDTPGh-----------~df~~~~~----~~l~~aD~~ILVVDas~g~~e-~~~--~~~~~qt~e~l~ll~~~~vp 406 (536)
.+.||||||+ +.|...+. .++..++++++|+|+...... ... ........+++..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 5899999994 33333222 234567899999998642100 000 00122445666666667887
Q ss_pred cEEEEEecccccccchhHHHHHHHHHHHHHHHcCCC----CCCccEEEEEcccCCCccc
Q 009378 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK----DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 407 ~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~----~~~i~vipvSA~~GenI~e 461 (536)
+|||+||+|+........ +++. +.+++. ....+++++||++| ||.+
T Consensus 133 -~iiv~NK~Dl~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~SA~~g-gi~~ 182 (201)
T PRK04213 133 -PIVAVNKMDKIKNRDEVL----DEIA---ERLGLYPPWRQWQDIIAPISAKKG-GIEE 182 (201)
T ss_pred -eEEEEECccccCcHHHHH----HHHH---HHhcCCccccccCCcEEEEecccC-CHHH
Confidence 899999999974321122 2222 223321 11136899999999 9986
No 154
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.69 E-value=3.9e-16 Score=144.95 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=95.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++........ ............+......+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~l 50 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV------------------------------PTVFDNYSATVTVDGKQVNL 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC------------------------------CceeeeeEEEEEECCEEEEE
Confidence 589999999999999999998542210000 00000011111222345679
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+..+.......++.+|++|+|+|++... .+.....+.+..+... ++| +|+|+||+|+.......
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~ 123 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS------SFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTL 123 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhh
Confidence 99999999988766666778899999999998631 1222233333333332 355 99999999998532210
Q ss_pred H-------HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 F-------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~-------eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. .-.......+....++ .+++++||++|+|+.+
T Consensus 124 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 163 (171)
T cd00157 124 KKLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKE 163 (171)
T ss_pred hhcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHH
Confidence 0 0012333444444443 3789999999999986
No 155
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.69 E-value=5e-16 Score=151.88 Aligned_cols=148 Identities=15% Similarity=0.097 Sum_probs=95.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec---CC
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KN 343 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~ 343 (536)
++|+|+|.+|+|||||+++|++.... ....+.++.+.....+.. ..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-------------------------------~~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-------------------------------KSYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCceeEEEEEEEEEeCCCCE
Confidence 47999999999999999999842110 001111222222222222 34
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-----CCCcEEEEEeccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMDAV 418 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-----~vp~vIVVINKiDl~ 418 (536)
..+.||||||++.|.......++.+|++|||+|++... . + ......+..+... ..+++|||+||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~---s---~-~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQ---S---F-ENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHH---H---H-HHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 68899999999988888888899999999999998642 1 1 1222233333322 123489999999997
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...... .+.+..+.+..++ +++++||++|+|+.+
T Consensus 123 ~~~~v~----~~~~~~~~~~~~~-----~~~~iSAktg~gv~~ 156 (215)
T cd04109 123 HNRTVK----DDKHARFAQANGM-----ESCLVSAKTGDRVNL 156 (215)
T ss_pred cccccC----HHHHHHHHHHcCC-----EEEEEECCCCCCHHH
Confidence 422221 1233344444443 689999999999986
No 156
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.69 E-value=3.2e-16 Score=146.87 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=92.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+|||||+++|+..... . ...+..++.+.............+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~~~~l 51 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE--K---------------------------KYVATLGVEVHPLDFHTNRGKIRF 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--C---------------------------CCCCceeeEEEEEEEEECCEEEEE
Confidence 47999999999999999999832110 0 011112222222222223345778
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH-HHc-CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSF-GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll-~~~-~vp~vIVVINKiDl~~~~~e~ 424 (536)
.+|||||++.+.......+..+|++|+|+|++.+.. +. .....+..+ +.. ++| +|||+||+|+.... ..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~-~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~-~~ 122 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVT------YK-NVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-VK 122 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHH------HH-HHHHHHHHHHHhCCCCc-EEEEEEchhccccc-CC
Confidence 999999999887766677888999999999986521 11 111222222 222 455 99999999997321 11
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+.+.. .++++++||++|+|+.+
T Consensus 123 -----~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 123 -----AKQITFHRKK-----NLQYYEISAKSNYNFEK 149 (166)
T ss_pred -----HHHHHHHHHc-----CCEEEEEeCCCCCChHH
Confidence 1112222222 34789999999999986
No 157
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.69 E-value=2.4e-16 Score=147.82 Aligned_cols=148 Identities=19% Similarity=0.136 Sum_probs=94.4
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|..++|||||+++|.+.... . ..+..|. ....++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~----------------------------~~~T~~~----~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q----------------------------PIPTIGF----NVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C----------------------------cCCcCce----eEEEEEECCEEEE
Confidence 5899999999999999999843100 0 0011111 1122445778999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhHH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~~ 425 (536)
||||||+..+...+...++.+|++|||+|++... .+.....++..++... ...++|||+||+|+... ...
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 118 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD------RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSV 118 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHH------HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCH
Confidence 9999999998888888889999999999998641 1222223333333322 22349999999998632 222
Q ss_pred HHHHHHHHHHHHHcCC-CCCCccEEEEEcccCCCccc
Q 009378 426 DSIKVQLGTFLRSCGF-KDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 426 eei~~~L~~~l~~~g~-~~~~i~vipvSA~~GenI~e 461 (536)
+++ ..++....+ ....+.++++||++|.||.+
T Consensus 119 ~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 119 EEM----TELLSLHKLCCGRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred HHH----HHHhCCccccCCCcEEEEeCcCCCCCCHHH
Confidence 222 222221111 11234688999999999986
No 158
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=5e-16 Score=167.36 Aligned_cols=143 Identities=24% Similarity=0.271 Sum_probs=102.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|++|+|||||+++|++....+.. ...|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~------------------------------~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA------------------------------DTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC------------------------------CCCCCcccceEEEEEECCcEE
Confidence 57999999999999999999854322211 124566555555566677899
Q ss_pred EEEeCCCccc--------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 347 VVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 347 ~LIDTPGh~d--------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.||||||+.. +......++..+|++|||+|+..+ +.....+...+++..+.| +|+|+||+|+.
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~--------~~~~~~~~~~~l~~~~~p-iilv~NK~D~~ 122 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG--------LTPADEEIAKILRKSNKP-VILVVNKVDGP 122 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccCc
Confidence 9999999887 233345677889999999999876 334455666777778887 99999999975
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. .. .+..+ ..+++. .++++||++|.|+.+
T Consensus 123 ~~-~~-------~~~~~-~~lg~~----~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 123 DE-EA-------DAYEF-YSLGLG----EPYPISAEHGRGIGD 152 (435)
T ss_pred cc-hh-------hHHHH-HhcCCC----CCEEEEeeCCCCHHH
Confidence 31 11 11111 234542 359999999999975
No 159
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.68 E-value=5.8e-16 Score=142.40 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=94.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|.+|+|||||+++|++........ ...+.... ....+......+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~-----------------------------~~~~~~~~-~~~~~~~~~~~~ 50 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYE-----------------------------PTKADSYR-KKVVLDGEDVQL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccC-----------------------------CcchhhEE-EEEEECCEEEEE
Confidence 479999999999999999998432110000 00000000 011233345679
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||+..+...+...++.+|++|+|+|..... . +.........+.+. .++| +|+|+||+|+......
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~ 123 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---S---FTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQV 123 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEEcccccccccc
Confidence 99999999999988888999999999999987541 1 11122222223332 4566 9999999999752112
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ....+.+.+++ +++++||++|+|+.+
T Consensus 124 ~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 124 SSE----EAANLARQWGV-----PYVETSAKTRQNVEK 152 (164)
T ss_pred CHH----HHHHHHHHhCC-----eEEEeeCCCCCCHHH
Confidence 212 22233333443 789999999999986
No 160
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.68 E-value=8.8e-16 Score=142.01 Aligned_cols=151 Identities=19% Similarity=0.153 Sum_probs=94.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-cCCeE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~ 345 (536)
++|+|+|.+|+|||||+++|......... ...+..|..+......+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPK---------------------------NYLMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc---------------------------cCCCceEEEEEEEEEEeCCCCEEE
Confidence 47999999999999999999842111100 001112222222222222 34578
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchh
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e 423 (536)
+.||||||+..+...+...+..+|++|+|+|.+.... + ......+..+... ++| +|+|+||+|+......
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~ 125 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS------F-ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEV 125 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH------H-HHHHHHHHHHHHhCCCCC-EEEEEECcccccccCC
Confidence 9999999999888888888899999999999986421 1 1122333333332 455 9999999998743211
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ....+....+ .+++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 126 TDA----QAQAFAQANQ-----LKFFKTSALRGVGYEE 154 (164)
T ss_pred CHH----HHHHHHHHcC-----CeEEEEeCCCCCChHH
Confidence 111 1122222233 3689999999999986
No 161
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=7.3e-16 Score=143.86 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=93.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|+.|+|||||+++|++.... .. .. ......+.. ..+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~-------------------------~~-~~~~~~~~~---~~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--EN-------------------------VP-RVLPEITIP---ADVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cc-------------------------CC-CcccceEee---eeecCCeEEE
Confidence 47999999999999999999853211 00 00 000111111 1123456789
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+..+...+...+..+|++|||+|++.+.. +......++..++.. ++| +|+|+||+|+.......
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s------~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~ 122 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST------LERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA 122 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh
Confidence 999999998887777777899999999999986421 111112233333332 455 99999999997532211
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+.+.+..+...+.. ..+++++||++|.|+.+
T Consensus 123 --~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 123 --GLEEEMLPIMNEFRE---IETCVECSAKTLINVSE 154 (166)
T ss_pred --HHHHHHHHHHHHHhc---ccEEEEeccccccCHHH
Confidence 112222222222211 12689999999999986
No 162
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.68 E-value=5.7e-16 Score=145.14 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=92.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+++|++|+|||||+++|+...... ......+.........+......
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-----------------------------RTEATIGVDFRERTVEIDGERIK 52 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------ccccceeEEEEEEEEEECCeEEE
Confidence 5789999999999999999998421100 00111122222222223334478
Q ss_pred EEEEeCCCcccchh-hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEeccccccc
Q 009378 346 VVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 346 i~LIDTPGh~df~~-~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~~~ 420 (536)
+.||||||+.+|.. .+...++.+|++|+|+|++.+.. +. ....++..+.. ..+| +|||+||+|+...
T Consensus 53 ~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~-~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 124 (170)
T cd04115 53 VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS------FH-SLPSWIEECEQHSLPNEVP-RILVGNKCDLREQ 124 (170)
T ss_pred EEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH------HH-hHHHHHHHHHHhcCCCCCC-EEEEEECccchhh
Confidence 99999999998864 45566788999999999986521 11 22233333332 2355 9999999998743
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEccc---CCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~---GenI~e 461 (536)
..... .....+.+..+ ++++++||++ +.|+.+
T Consensus 125 ~~~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 125 IQVPT----DLAQRFADAHS-----MPLFETSAKDPSENDHVEA 159 (170)
T ss_pred cCCCH----HHHHHHHHHcC-----CcEEEEeccCCcCCCCHHH
Confidence 22111 12223333333 4789999999 666654
No 163
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.68 E-value=5.9e-16 Score=144.76 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=94.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++....... . +..+... .....+......+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~---------------------------~--~t~~~~~-~~~~~~~~~~~~~ 50 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY---------------------------V--PTVFDHY-AVSVTVGGKQYLL 50 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC---------------------------C--Cceeeee-EEEEEECCEEEEE
Confidence 47999999999999999999843211000 0 0000000 0111223334568
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+..|...+...+..+|++|+|+|..... . +.......+..++. .++| +|||+||+|+..... .
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~---s---~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~-~ 122 (174)
T cd04135 51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---S---FQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPK-T 122 (174)
T ss_pred EEEeCCCcccccccccccCCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChh-h
Confidence 89999999998877777888999999999998642 1 11121122333332 3455 999999999864321 1
Q ss_pred HHH---------HHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~ee---------i~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ...+...+.+..+. .+++++||++|.|+.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~ 164 (174)
T cd04135 123 LARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKT 164 (174)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHH
Confidence 110 11334444555553 3689999999999986
No 164
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=5.9e-16 Score=147.64 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|..|+|||||+++|...... ...+..|... ..++..+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~------------------------------~~~~T~~~~~----~~~~~~~ 60 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVV------------------------------TTIPTIGFNV----ETVEYKN 60 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------ccCCccccce----EEEEECC
Confidence 34589999999999999999999621100 0011122221 1234467
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||+..+...+...++.+|++|||+|++... .+.....++..++.. ...+|+|||+||.|+....
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 134 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE------RIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM 134 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC
Confidence 88999999999999888888899999999999998531 122222233333322 2224599999999986421
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+++...+. ...+....+.++++||++|+|+.+
T Consensus 135 --~~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 135 --STTEVTEKLG----LHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred --CHHHHHHHhC----CCcccCCcEEEEeeeCCCCCCHHH
Confidence 1122222221 112223345677999999999986
No 165
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=4.8e-16 Score=148.30 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=97.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|.+|+|||||+++|.+...... .+..+.+. ..+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~------------------------------~~t~~~~~----~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH------------------------------QPTQHPTS----EELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc------------------------------CCccccce----EEEEECC
Confidence 4568999999999999999999985321100 01111211 1233467
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH---HcCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~---~~~vp~vIVVINKiDl~~~ 420 (536)
..+.+|||||+..+...+..++..+|++|+|+|++... .+.....+...++. ..++| +|||+||+|+...
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~------~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE------RFAESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH------HHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 88999999999988888888899999999999998541 11111122222222 23555 9999999998632
Q ss_pred chhHHHHHHHHHHHHHHH---cCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRS---CGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~---~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++.+.+.-.-.. .......+.++++||++|+|+.+
T Consensus 134 --~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 175 (184)
T smart00178 134 --ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGE 175 (184)
T ss_pred --CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHH
Confidence 2223333333211000 00111345789999999999986
No 166
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.68 E-value=5.6e-16 Score=146.28 Aligned_cols=149 Identities=14% Similarity=0.110 Sum_probs=94.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|..|+|||||+.+|+........ .+..+.... ....+......
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~-----------------------------~~t~~~~~~-~~~~~~~~~~~ 51 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH-----------------------------DPTIEDAYK-QQARIDNEPAL 51 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCc-----------------------------CCcccceEE-EEEEECCEEEE
Confidence 478999999999999999999843211000 000111110 11122333467
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEecccccccc
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~~~~ 421 (536)
+.||||||..+|...+..+++.+|++|||+|++.... +. ...+....+.. .++| +|||+||+|+....
T Consensus 52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S------f~-~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~ 123 (172)
T cd04141 52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS------FQ-EASEFKKLITRVRLTEDIP-LVLVGNKVDLESQR 123 (172)
T ss_pred EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH------HH-HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcC
Confidence 8999999999998888888999999999999986521 11 12222222222 2455 99999999986422
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... ++...+.+..++ +++++||++|.||.+
T Consensus 124 ~v~~----~~~~~~a~~~~~-----~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 124 QVTT----EEGRNLAREFNC-----PFFETSAALRHYIDD 154 (172)
T ss_pred ccCH----HHHHHHHHHhCC-----EEEEEecCCCCCHHH
Confidence 1111 223334444443 789999999999986
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=9.2e-16 Score=146.39 Aligned_cols=149 Identities=18% Similarity=0.228 Sum_probs=96.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|++|+|||||+++|++..... ......|.|..+..... ..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~---~~ 70 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLA-----------------------------RTSKTPGRTQLINFFEV---ND 70 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------------------------cccCCCCceeEEEEEec---CC
Confidence 56889999999999999999999532100 01112344444333222 36
Q ss_pred EEEEEeCCCcc----------cchhhHhhh---cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEE
Q 009378 345 HVVVLDSPGHK----------DFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (536)
Q Consensus 345 ~i~LIDTPGh~----------df~~~~~~~---l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVV 411 (536)
.+.||||||+. .+......+ ...++++++|+|+..+ ......++..++...++| ++++
T Consensus 71 ~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~i~~~l~~~~~~-~iiv 141 (196)
T PRK00454 71 KLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP--------LKELDLQMIEWLKEYGIP-VLIV 141 (196)
T ss_pred eEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCC--------CCHHHHHHHHHHHHcCCc-EEEE
Confidence 89999999953 222222222 3345789999998765 223334455566677887 8999
Q ss_pred EecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 412 INKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+||+|+.. ....+.+.+.+...+... ..+++++||++|+|+.+
T Consensus 142 ~nK~Dl~~--~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 142 LTKADKLK--KGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDE 184 (196)
T ss_pred EECcccCC--HHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHH
Confidence 99999973 334444455555655443 24789999999999985
No 168
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.67 E-value=5.3e-16 Score=144.93 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=95.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|.+|+|||||+++|++....... + +..+... .....+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~------------------------~-----~t~~~~~-~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY------------------------D-----PTIEDSY-RKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc------------------------C-----CcchheE-EEEEEECCEEEEE
Confidence 68999999999999999999843211000 0 0011111 1111223334678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
.+|||||+.+|...+...++.++++|||+|.+... .++....+...........++| +|+|+||+|+........
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~~~- 126 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA---SLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQVSR- 126 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCccCH-
Confidence 99999999999988888899999999999998642 1111222222222222223566 999999999874322111
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+....+.+.++ .++++++||++|.|+.+
T Consensus 127 ---~~~~~~~~~~~----~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 127 ---EDGVSLSQQWG----NVPFYETSARKRTNVDE 154 (168)
T ss_pred ---HHHHHHHHHcC----CceEEEeeCCCCCCHHH
Confidence 22233333433 24789999999999986
No 169
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=1e-15 Score=150.62 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=97.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+..++|+|+|..|+|||||+++++..... ....+..|+++...........
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~-----------------------------~~~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-----------------------------KKYEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCC-----------------------------CccCCccceeEEEEEEEECCeE
Confidence 66799999999999999999998732110 0111223333322222223345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||||+++|...+..+++.+|++|||+|.+... .+..+ ...+..+.. .++| +|||+||+|+...
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~---s~~~i----~~w~~~i~~~~~~~p-iilvgNK~Dl~~~- 132 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNV----PTWHRDLCRVCENIP-IVLCGNKVDVKNR- 132 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH---HHHHH----HHHHHHHHHhCCCCc-EEEEEEchhhhhc-
Confidence 78999999999999887777889999999999998752 11111 222222222 2455 9999999998632
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....+ .+ .+.+..+ ++++++||++|.|+.+
T Consensus 133 ~v~~~----~~-~~~~~~~-----~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 133 QVKAK----QV-TFHRKKN-----LQYYEISAKSNYNFEK 162 (219)
T ss_pred cCCHH----HH-HHHHhcC-----CEEEEcCCCCCCCHHH
Confidence 11111 12 2333333 4789999999999986
No 170
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.67 E-value=3.8e-16 Score=148.66 Aligned_cols=151 Identities=16% Similarity=0.079 Sum_probs=95.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+..+|+|+|+.|+|||||+++|.+..... ..+..+.+ ...+...+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~------------------------------~~~T~~~~----~~~i~~~~ 62 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ------------------------------HVPTLHPT----SEELTIGN 62 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc------------------------------cCCccCcc----eEEEEECC
Confidence 456889999999999999999998432110 00011111 11233456
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH---HcCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~---~~~vp~vIVVINKiDl~~~ 420 (536)
..+.+|||||+..+...+...++.+|++|+|+|+.... .+.....+...++. ..+.| +|||+||+|+..
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~------s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~- 134 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE------RFQESKEELDSLLSDEELANVP-FLILGNKIDLPG- 134 (190)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH------HHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCC-
Confidence 78999999999988877778889999999999998531 11111222222222 23455 999999999863
Q ss_pred chhHHHHHHHHHHHHHHHcCC-----------CCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGF-----------KDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~-----------~~~~i~vipvSA~~GenI~e 461 (536)
....+++. .++....+ ....++++++||++|+|+.+
T Consensus 135 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e 181 (190)
T cd00879 135 -AVSEEELR----QALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGE 181 (190)
T ss_pred -CcCHHHHH----HHhCcccccccccccccccCceeEEEEEeEecCCCChHH
Confidence 22223333 33321111 11234689999999999986
No 171
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.67 E-value=1.3e-15 Score=145.47 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=96.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|..++|||||+.+|+..... . ...+..|.........+......+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~--~---------------------------~~~~T~g~~~~~~~i~~~~~~~~l 51 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD--E---------------------------DYIQTLGVNFMEKTISIRGTEITF 51 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--C---------------------------CCCCccceEEEEEEEEECCEEEEE
Confidence 47999999999999999999842110 0 011112222222222233334678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc-hh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS-KD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~-~e 423 (536)
.||||+|++.|...+...++.+|++|+|+|++... .+. ...+.+..++.. ... .|+|+||+|+.... ..
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~---s~~----~i~~~~~~~~~~~~~~~-pilVgnK~Dl~~~~~~~ 123 (182)
T cd04128 52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS---TLN----SIKEWYRQARGFNKTAI-PILVGTKYDLFADLPPE 123 (182)
T ss_pred EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhCCCCC-EEEEEEchhccccccch
Confidence 99999999999888888899999999999998642 111 222333333332 223 36889999996311 11
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+.+.++...+.+..+ .+++++||++|.|+.+
T Consensus 124 ~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 124 EQEEITKQARKYAKAMK-----APLIFCSTSHSINVQK 156 (182)
T ss_pred hhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11223344555555554 3789999999999986
No 172
>PLN03110 Rab GTPase; Provisional
Probab=99.67 E-value=1.3e-15 Score=149.32 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=98.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|+.|+|||||+++|++..... ...+..|+........+....
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-----------------------------~~~~t~g~~~~~~~v~~~~~~ 60 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-----------------------------ESKSTIGVEFATRTLQVEGKT 60 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCceeEEEEEEEEEECCEE
Confidence 346899999999999999999998432110 011122332222233333344
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||||+++|...+...++.++++|||+|.+... .+ ......+..++.. ++| +|||+||+|+...
T Consensus 61 ~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 132 (216)
T PLN03110 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TF----DNVQRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH---HH----HHHHHHHHHHHHhCCCCCe-EEEEEEChhcccc
Confidence 68999999999999888888899999999999998542 11 1222233333332 455 9999999998642
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.....+ ....+....+ ++++++||++|.|+.+
T Consensus 133 ~~~~~~----~~~~l~~~~~-----~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 133 RSVAEE----DGQALAEKEG-----LSFLETSALEATNVEK 164 (216)
T ss_pred cCCCHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 211111 1222222333 4799999999999986
No 173
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.67 E-value=1e-15 Score=145.05 Aligned_cols=153 Identities=13% Similarity=0.143 Sum_probs=93.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+|||||+.+|++.... .. ..+..+..... ...+......+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~---------------------------~~pt~~~~~~~-~~~~~~~~~~l 51 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SE---------------------------YVPTVFDNYAV-TVMIGGEPYTL 51 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CC---------------------------CCCceeeeeEE-EEEECCEEEEE
Confidence 68999999999999999999842210 00 00111111111 11222234678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+++|...+...++.+|++|||+|.+... .+ ......++..++.. ++| +|||+||+|+.... +.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~---s~---~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~-~~ 123 (175)
T cd01874 52 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SF---ENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDP-ST 123 (175)
T ss_pred EEEECCCccchhhhhhhhcccCCEEEEEEECCCHH---HH---HHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhCh-hh
Confidence 89999999999877777889999999999998642 11 11111122223222 444 99999999986421 11
Q ss_pred HHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+.+ .++...+.+..+ .+.|+++||++|+|+.+
T Consensus 124 ~~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~ 165 (175)
T cd01874 124 IEKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKN 165 (175)
T ss_pred HHHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHH
Confidence 1111 122233333333 24789999999999986
No 174
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.67 E-value=5.3e-16 Score=148.54 Aligned_cols=147 Identities=20% Similarity=0.193 Sum_probs=91.8
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|.+|+|||||+++|+........ .+..+... .....+......+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~-----------------------------~~t~~~~~-~~~~~~~~~~~~l~ 50 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETY-----------------------------DPTIEDSY-RKQVVVDGQPCMLE 50 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-----------------------------CCchHhhE-EEEEEECCEEEEEE
Confidence 4899999999999999999843211000 00001000 01111222335688
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEEecccccccc
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVINKiDl~~~~ 421 (536)
||||||+++|...+..+++.+|++|||+|.+.... +. .....+..+.. .++| +|||+||+|+....
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~ 122 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FE----RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYER 122 (190)
T ss_pred EEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HH----HHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccC
Confidence 99999999999888889999999999999986421 11 11222222222 2345 99999999997422
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....+ ....+.+.+++ +++++||++|.|+.+
T Consensus 123 ~v~~~----~~~~~~~~~~~-----~~~e~SAk~~~~v~~ 153 (190)
T cd04144 123 EVSTE----EGAALARRLGC-----EFIEASAKTNVNVER 153 (190)
T ss_pred ccCHH----HHHHHHHHhCC-----EEEEecCCCCCCHHH
Confidence 21111 22333334443 789999999999986
No 175
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=4.9e-16 Score=177.28 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=104.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|++|+|||||+|+|++....+.. ...|+|.+.....+...+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~------------------------------~~~gtT~d~~~~~~~~~~~~ 499 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVN------------------------------DLAGTTRDPVDEIVEIDGED 499 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccC------------------------------CCCCCCcCcceeEEEECCCE
Confidence 479999999999999999999964322211 12455555444455667788
Q ss_pred EEEEeCCCccc---------chhh--HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009378 346 VVVLDSPGHKD---------FVPN--MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 346 i~LIDTPGh~d---------f~~~--~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
+.||||||+.+ +... ...++..+|++|||+|++.+ ...+....+..+...+.| +|||+||
T Consensus 500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~--------~s~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQP--------ISEQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEEc
Confidence 99999999532 2211 23456889999999999977 334555566666667877 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCC
Q 009378 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~ 463 (536)
+|+.. ....+.+.+.+...+.... ..+++++||++|.|+.++.
T Consensus 571 ~DL~~--~~~~~~~~~~~~~~l~~~~----~~~ii~iSAktg~gv~~L~ 613 (712)
T PRK09518 571 WDLMD--EFRRQRLERLWKTEFDRVT----WARRVNLSAKTGWHTNRLA 613 (712)
T ss_pred hhcCC--hhHHHHHHHHHHHhccCCC----CCCEEEEECCCCCCHHHHH
Confidence 99974 2233334444443332222 3467999999999998743
No 176
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=4.9e-16 Score=150.57 Aligned_cols=150 Identities=18% Similarity=0.160 Sum_probs=87.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++....... .+..+..+......+......+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~-----------------------------~pt~~~~~~~~~i~~~~~~~~l 51 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY-----------------------------IPTEHRRLYRPAVVLSGRVYDL 51 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCccc-----------------------------CCccccccceeEEEECCEEEEE
Confidence 47999999999999999999843211000 0001111111111223333678
Q ss_pred EEEeCCCcccchh--------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH------cCCCcEEEEE
Q 009378 347 VVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAV 412 (536)
Q Consensus 347 ~LIDTPGh~df~~--------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~------~~vp~vIVVI 412 (536)
.||||||+..|.. .....+..+|++|||+|++.+. . +. ........+.. .++| +|||+
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~---S---~~-~~~~~~~~i~~~~~~~~~~~p-iiivg 123 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD---S---FH-YVKLLRQQILETRPAGNKEPP-IVVVG 123 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH---H---HH-HHHHHHHHHHHhcccCCCCCC-EEEEE
Confidence 8999999765421 1334578899999999998642 1 11 11222222221 2355 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
||+|+........ +.+..+.+.. ..++|+++||++|.||.+
T Consensus 124 NK~Dl~~~~~~~~----~~~~~~~~~~----~~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 124 NKRDQQRHRFAPR----HVLSVLVRKS----WKCGYLECSAKYNWHILL 164 (198)
T ss_pred ECccccccccccH----HHHHHHHHHh----cCCcEEEecCCCCCCHHH
Confidence 9999964211111 1222332211 134789999999999986
No 177
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.67 E-value=1.1e-15 Score=142.93 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=93.0
Q ss_pred EEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEE
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~L 348 (536)
|+|+|..|+|||||+++|++....... . +..+... .....+......+.|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~------------------------~-----~~~~~~~-~~~~~~~~~~~~~~i 50 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY------------------------V-----PTVFENY-SADVEVDGKPVELGL 50 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC------------------------C-----CcEEeee-eEEEEECCEEEEEEE
Confidence 689999999999999999853211000 0 0000000 111122333456899
Q ss_pred EeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchhHHH
Q 009378 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 349 IDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
|||||++.|.......+..+|++|||+|++... . +.......+..+.. .++| +|||+||+|+... ....+
T Consensus 51 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s---~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~-~~~~~ 122 (174)
T smart00174 51 WDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA---S---FENVKEKWYPEVKHFCPNTP-IILVGTKLDLRED-KSTLR 122 (174)
T ss_pred EECCCCcccchhchhhcCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhC-hhhhh
Confidence 999999998877777888999999999998541 1 22121122223322 2455 9999999998742 11111
Q ss_pred HH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 427 SI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 427 ei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
++ .++...+.+..++ .+++++||++|.|+.+
T Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 162 (174)
T smart00174 123 ELSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVRE 162 (174)
T ss_pred hhhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHH
Confidence 11 2333445555553 3689999999999986
No 178
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.67 E-value=4.6e-16 Score=150.02 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=90.4
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|..|+|||||+++|++..... .. ..+ .+ ........+......+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~----------------------~~t-----~~-~~~~~~~~~~~~~~~l~ 50 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KY----------------------RRT-----VE-EMHRKEYEVGGVSLTLD 50 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cC----------------------CCc-----hh-hheeEEEEECCEEEEEE
Confidence 58999999999999999998432110 00 000 00 00111111222236789
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc-chhHHH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY-SKDRFD 426 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~-~~e~~e 426 (536)
||||||+..|...+..++..+|++|||+|++... .+..+......++......++| +|||+||+|+... .....+
T Consensus 51 i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~v~~~ 126 (198)
T cd04147 51 ILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVPAK 126 (198)
T ss_pred EEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEccccccccccccHH
Confidence 9999999998877777889999999999998642 1111111112222222223566 9999999998742 111111
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+..+ .....+ .++++++||++|.|+.+
T Consensus 127 ~~~~---~~~~~~-----~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 127 DALS---TVELDW-----NCGFVETSAKDNENVLE 153 (198)
T ss_pred HHHH---HHHhhc-----CCcEEEecCCCCCCHHH
Confidence 1111 111112 23689999999999986
No 179
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.67 E-value=6.8e-16 Score=176.37 Aligned_cols=145 Identities=22% Similarity=0.311 Sum_probs=103.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+++|++|+|||||+|+|++....+ ....|+|++.....+...+.
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v-------------------------------gn~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV-------------------------------GNWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------CCCCCceEeeEEEEEEcCce
Confidence 46789999999999999999998543211 12377888777777888889
Q ss_pred EEEEEeCCCcccchhh----------Hhhh--cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEE
Q 009378 345 HVVVLDSPGHKDFVPN----------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~----------~~~~--l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVI 412 (536)
.+.||||||+.++... .... ...+|++|+|+|++... ........+.++++| +|+|+
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le----------r~l~l~~ql~e~giP-vIvVl 119 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE----------RNLYLTLQLLELGIP-CIVAL 119 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch----------hhHHHHHHHHHcCCC-EEEEE
Confidence 9999999998776421 1112 24699999999998641 223344556778888 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
||+|+.+... +. ..+..+.+.+|. +++++||++|+|+++
T Consensus 120 NK~Dl~~~~~--i~---id~~~L~~~LG~-----pVvpiSA~~g~GIde 158 (772)
T PRK09554 120 NMLDIAEKQN--IR---IDIDALSARLGC-----PVIPLVSTRGRGIEA 158 (772)
T ss_pred EchhhhhccC--cH---HHHHHHHHHhCC-----CEEEEEeecCCCHHH
Confidence 9999874221 11 223333344554 789999999999876
No 180
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.66 E-value=1.8e-15 Score=138.67 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=92.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|++........ +..+.........+......+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHE-----------------------------STTQASFFQKTVNIGGKRIDL 51 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC-----------------------------CccceeEEEEEEEECCEEEEE
Confidence 479999999999999999998532211000 000111111112222334578
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~e 423 (536)
.+|||||+..+...+...+..+|++|+|+|.+.+.. +. .....+..+... ++| +|+|+||+|+......
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~-~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~ 123 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADS------FQ-KVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVV 123 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH------HH-HHHHHHHHHHHhCCCCCe-EEEEEECcccccccCC
Confidence 999999998888777777889999999999986521 11 122222222222 455 9999999998743222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ .+..+.+..+ .+++++||++|.|+.+
T Consensus 124 ~~~----~~~~~~~~~~-----~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 124 SKS----EAEEYAKSVG-----AKHFETSAKTGKGIEE 152 (162)
T ss_pred CHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 222 2233333334 3679999999999986
No 181
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=1.1e-15 Score=174.46 Aligned_cols=145 Identities=23% Similarity=0.314 Sum_probs=106.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
...+|+|+|++|+|||||+|+|++....+. ....|+|.+.......+.+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv------------------------------~~~pGvT~d~~~~~~~~~~~ 323 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVV------------------------------EDTPGVTRDRVSYDAEWAGT 323 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCeeEEEEEEEEEECCE
Confidence 457899999999999999999996432221 22367777777667777888
Q ss_pred EEEEEeCCCccc--------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 345 ~i~LIDTPGh~d--------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.+.||||||... +...+..++..+|++|||+|+..+ +.....++..+++..+.| +|+|+||+|
T Consensus 324 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--------~~~~d~~i~~~Lr~~~~p-vIlV~NK~D 394 (712)
T PRK09518 324 DFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--------LTSTDERIVRMLRRAGKP-VVLAVNKID 394 (712)
T ss_pred EEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 999999999653 445556678899999999999876 344556677777788887 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+... .. ....+ ..+++. ..+++||++|.||.+
T Consensus 395 ~~~~-~~-------~~~~~-~~lg~~----~~~~iSA~~g~GI~e 426 (712)
T PRK09518 395 DQAS-EY-------DAAEF-WKLGLG----EPYPISAMHGRGVGD 426 (712)
T ss_pred cccc-hh-------hHHHH-HHcCCC----CeEEEECCCCCCchH
Confidence 8632 11 11111 223442 248999999999986
No 182
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.66 E-value=9.7e-16 Score=145.49 Aligned_cols=154 Identities=11% Similarity=0.030 Sum_probs=93.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-cCCeE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~ 345 (536)
++|+|+|..|+|||||+++|++.... .. ..+..+..... ..... .....
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~---------------------------~~~t~~~~~~~-~i~~~~~~~~~ 50 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EE---------------------------YVPTVFENYVT-NIQGPNGKIIE 50 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CC---------------------------CCCeeeeeeEE-EEEecCCcEEE
Confidence 57999999999999999999843211 00 00001111100 11111 23457
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchh
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e 423 (536)
+.||||||+++|.......++.+|++|||+|++... . +......++..+.. .++| +|||+||+|+......
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPT---S---LDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNL 123 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccc
Confidence 899999999999888777889999999999998642 1 11111112222222 2455 9999999998642110
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.......+...+....++ .+++++||++|+|+.+
T Consensus 124 ~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 124 DRKVTPAQAESVAKKQGA----FAYLECSAKTMENVEE 157 (187)
T ss_pred cCCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHH
Confidence 000012334444444443 2689999999999986
No 183
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=9.2e-16 Score=143.31 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=96.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|++|+|||||+++|.+.... ...+..|+++ ..+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~------------------------------~~~~t~g~~~----~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS------------------------------HITPTQGFNI----KTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc------------------------------ccCCCCCcce----EEEEECC
Confidence 34789999999999999999999853110 0011123222 1233457
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH---HHcCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI---RSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll---~~~~vp~vIVVINKiDl~~~ 420 (536)
..+.+||+||+..+...+...+..+|++|+|+|+.... .+.....+...++ ...++| +++++||+|+...
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK------RLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 88999999999888877777889999999999998531 1111122222222 234566 9999999998742
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++.+ .+....+....++++++||++|+|+.+
T Consensus 131 --~~~~~i~~----~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 131 --APAEEIAE----ALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred --CCHHHHHH----HcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 22222222 222122223344678999999999986
No 184
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.8e-15 Score=143.17 Aligned_cols=166 Identities=18% Similarity=0.234 Sum_probs=118.5
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+..+|+++|..++|||+||.|+++....- +-...-|+.......+++..
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~-----------------------------~YqATIGiDFlskt~~l~d~ 69 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDN-----------------------------TYQATIGIDFLSKTMYLEDR 69 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcc-----------------------------cccceeeeEEEEEEEEEcCc
Confidence 3556899999999999999999999643211 11223455555555566777
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC--CcEEEEEeccccccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v--p~vIVVINKiDl~~~ 420 (536)
...+.||||+|+++|......+++.+.++|+|+|.+.. +.+....+++-...++.+- .-|++|.||.||.+.
T Consensus 70 ~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~------~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 70 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR------NSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc------chHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 88999999999999999999999999999999999864 2344455555555555554 236788999999954
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCC
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~ 487 (536)
.+...++- ....+.++. .|+.+||+.|.||.+ ||..|....+.
T Consensus 144 rqvs~eEg----~~kAkel~a-----~f~etsak~g~NVk~---------------lFrrIaa~l~~ 186 (221)
T KOG0094|consen 144 RQVSIEEG----ERKAKELNA-----EFIETSAKAGENVKQ---------------LFRRIAAALPG 186 (221)
T ss_pred hhhhHHHH----HHHHHHhCc-----EEEEecccCCCCHHH---------------HHHHHHHhccC
Confidence 22222222 233344443 789999999999975 88888654433
No 185
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.66 E-value=1.4e-15 Score=138.09 Aligned_cols=146 Identities=20% Similarity=0.180 Sum_probs=92.1
Q ss_pred EEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEE
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~L 348 (536)
|+|+|++|+|||||+++|.+...... ..+.+.... ..+......+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-------------------------------~~~t~~~~~--~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-------------------------------TIPTVGFNM--RKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-------------------------------ccCCCCcce--EEEEECCEEEEE
Confidence 89999999999999999985321110 001111111 123345678999
Q ss_pred EeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHH-HHHH---HcCCCcEEEEEecccccccchhH
Q 009378 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIR---SFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 349 IDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l-~ll~---~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
|||||+..|...+...+..+|++|+|+|++... .+ .+....+ .++. ..++| ++||+||+|+... ..
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~-~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~--~~ 118 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT------AL-EAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGA--LS 118 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH------HH-HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC--cC
Confidence 999999999888888899999999999998531 01 1122222 2222 13555 9999999998743 22
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+++...+ .........++++++||++|.|+.+
T Consensus 119 ~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 119 VDELIEQM----NLKSITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred HHHHHHHh----CcccccCCceEEEEEEeccCCChHH
Confidence 22222111 1111112346789999999999986
No 186
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=1.1e-15 Score=142.04 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=94.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
...++|+|+|++|+|||||+++|+...... .....+..+.....+...
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 53 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-------------------------------GQGATIGVDFMIKTVEIKG 53 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCC-------------------------------CCCCceeeEEEEEEEEECC
Confidence 345899999999999999999998421110 001111112222222333
Q ss_pred -CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccc
Q 009378 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 -~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~ 418 (536)
...+.|||+||+..|...+...+..+|++|+|+|+..+.. +. .....+..++. .++| +|+|+||+|+.
T Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~-~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~ 125 (169)
T cd04114 54 EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES------FR-CLPEWLREIEQYANNKVI-TILVGNKIDLA 125 (169)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH------HH-HHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 3568899999999998888888999999999999986421 11 11122222222 2455 89999999987
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... ....+.+.+... .. .+++++||++|.|+.+
T Consensus 126 ~~~~-i~~~~~~~~~~~---~~-----~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 126 ERRE-VSQQRAEEFSDA---QD-----MYYLETSAKESDNVEK 159 (169)
T ss_pred cccc-cCHHHHHHHHHH---cC-----CeEEEeeCCCCCCHHH
Confidence 4222 112222222221 11 3689999999999986
No 187
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=9.6e-16 Score=151.15 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=95.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+++|||||+++|+..... ...+..|.. +.........+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~------------------------------~~~~Tig~~----~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK------------------------------DTVSTVGGA----FYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC------------------------------CCCCccceE----EEEEEeeEEEE
Confidence 47999999999999999999842210 000111111 11122345779
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccch--
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK-- 422 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~-- 422 (536)
.||||||++.|...+...++.+|++|||+|++... . +.....++..+... .++| +|||+||+|+.....
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~---S---f~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ---S---LEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALA 119 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccc
Confidence 99999999999888888899999999999998642 1 11122222222222 2344 999999999974100
Q ss_pred -------------hHHHHHHHHHHHHHHHcCCC---------CCCccEEEEEcccCCCccc
Q 009378 423 -------------DRFDSIKVQLGTFLRSCGFK---------DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 -------------e~~eei~~~L~~~l~~~g~~---------~~~i~vipvSA~~GenI~e 461 (536)
....-..++...+.+..+.. ...++|+++||++|.||.+
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~e 180 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDE 180 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHH
Confidence 00111123333444443310 0124789999999999987
No 188
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.1e-15 Score=149.40 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=95.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe-ecCCe
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKNY 344 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~ 344 (536)
.++|+|+|..|+|||||+++|++....... .+..|+........+ .....
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-----------------------------~~ti~~d~~~~~i~~~~~~~~ 52 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVS-----------------------------DPTVGVDFFSRLIEIEPGVRI 52 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------------------CceeceEEEEEEEEECCCCEE
Confidence 478999999999999999999843211100 011111111111111 12346
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccch
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~ 422 (536)
.+.||||||++.|.......++.+|++|||+|.+... .+ .....+...+.... ..+++|||+||+|+.....
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---Sf---~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~ 126 (211)
T cd04111 53 KLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE---SF---EHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQ 126 (211)
T ss_pred EEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCCeEEEEEEccccccccc
Confidence 7899999999999888888899999999999998642 12 22222222222222 2234889999999874222
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ++...+.+.++ ++++++||++|+|+.+
T Consensus 127 v~~----~~~~~~~~~~~-----~~~~e~Sak~g~~v~e 156 (211)
T cd04111 127 VTR----EEAEKLAKDLG-----MKYIETSARTGDNVEE 156 (211)
T ss_pred cCH----HHHHHHHHHhC-----CEEEEEeCCCCCCHHH
Confidence 111 22333444444 3789999999999987
No 189
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=1.1e-15 Score=159.64 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=93.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-C
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 342 (536)
+....|+|||.+|||||||+++|+.....+... +++|.......+.+ +
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~y-------------------------------pfTT~~p~~G~v~~~~ 204 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADY-------------------------------PFTTLHPNLGVVRVDD 204 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCC-------------------------------CCceeCceEEEEEeCC
Confidence 345679999999999999999998543222111 22333333333344 4
Q ss_pred CeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEec
Q 009378 343 NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNK 414 (536)
Q Consensus 343 ~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINK 414 (536)
...|+||||||..+ +....+..+..++++|+|||++... .++.+.....++...... ...| +|||+||
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~---s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NK 280 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD---PVEDYKTIRNELEKYSPELADKP-RILVLNK 280 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC---CHHHHHHHHHHHHHhhhhcccCC-eEEEEEC
Confidence 56799999999532 3445566778899999999998542 122222222222222111 2445 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+..... ... ..+..+++..+ ++++++||++++||.+
T Consensus 281 iDL~~~~~-~~~---~~~~~~~~~~~-----~~i~~iSAktg~GI~e 318 (335)
T PRK12299 281 IDLLDEEE-ERE---KRAALELAALG-----GPVFLISAVTGEGLDE 318 (335)
T ss_pred cccCCchh-HHH---HHHHHHHHhcC-----CCEEEEEcCCCCCHHH
Confidence 99974321 111 12222233332 4789999999999986
No 190
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=2.6e-15 Score=143.10 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=95.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+|||||+++|++..... ...+..|.........+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-----------------------------STKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEEE
Confidence 479999999999999999998432110 001112222222233333345678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+..|...+...+..+|++|||+|++... . +.. ...++..+... ...++|||+||+|+.......
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~---s---~~~-i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~ 124 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE---S---FEN-LKFWINEINRYARENVIKVIVANKSDLVNNKVVD 124 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH---H---HHH-HHHHHHHHHHhCCCCCeEEEEEECCCCcccccCC
Confidence 89999999999888888899999999999998642 1 111 12223323322 123499999999987422111
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. .....+....++ +++++||++|.|+.+
T Consensus 125 ~----~~~~~~~~~~~~-----~~~evSa~~~~~i~~ 152 (188)
T cd04125 125 S----NIAKSFCDSLNI-----PFFETSAKQSINVEE 152 (188)
T ss_pred H----HHHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 1 122223333343 689999999999986
No 191
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.65 E-value=3e-15 Score=143.81 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=96.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+++|..++|||||+.+++..... . ...+.-|..... ...++....
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~--~---------------------------~~~~t~~~~~~~-~~~~~~~~~ 51 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFP--K---------------------------EYIPTVFDNYSA-QTAVDGRTV 51 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCC--c---------------------------CCCCceEeeeEE-EEEECCEEE
Confidence 4589999999999999999999842110 0 000111111111 112333457
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccch
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~ 422 (536)
.+.||||||++.|...+..+++.+|++|+|+|.+... .|+.+. ..++..+.. -++| +|||+||.|+.....
T Consensus 52 ~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~---Sf~~~~---~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~ 124 (191)
T cd01875 52 SLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS---SYENVR---HKWHPEVCHHCPNVP-ILLVGTKKDLRNDAD 124 (191)
T ss_pred EEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH---HHHHHH---HHHHHHHHhhCCCCC-EEEEEeChhhhcChh
Confidence 7899999999999988888899999999999998642 122111 112222222 2455 999999999964311
Q ss_pred hHHHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+.+ .++...+.+..+ .++++++||++|+||.+
T Consensus 125 -~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e 167 (191)
T cd01875 125 -TLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKE 167 (191)
T ss_pred -hHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHH
Confidence 11111 123334444443 24789999999999986
No 192
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.65 E-value=2.5e-15 Score=150.66 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=92.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+|||||+++|++..... .. .+..+ ........+....+.+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y---------------------------~pTi~-d~~~k~~~i~~~~~~l 50 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QY---------------------------TPTIE-DFHRKLYSIRGEVYQL 50 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CC---------------------------CCChh-HhEEEEEEECCEEEEE
Confidence 479999999999999999998422110 00 00000 0111112233334778
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH--------HHcCCCcEEEEEeccccc
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI--------RSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll--------~~~~vp~vIVVINKiDl~ 418 (536)
.||||+|++.|.......+..+|++|||+|++... .|+.+..+..++...- ...++| +|||+||+|+.
T Consensus 51 ~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~---Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~ 126 (247)
T cd04143 51 DILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE---SFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRD 126 (247)
T ss_pred EEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccch
Confidence 99999999998877666788999999999998642 2222222222222110 002445 99999999997
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.......++ +..++... ..+.++++||++|.||.+
T Consensus 127 ~~~~v~~~e----i~~~~~~~----~~~~~~evSAktg~gI~e 161 (247)
T cd04143 127 FPREVQRDE----VEQLVGGD----ENCAYFEVSAKKNSNLDE 161 (247)
T ss_pred hccccCHHH----HHHHHHhc----CCCEEEEEeCCCCCCHHH
Confidence 422223333 33333211 134789999999999986
No 193
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=7.6e-16 Score=144.16 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=94.0
Q ss_pred EEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEE
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~L 348 (536)
|+|+|..|+|||||+++|++.... .. ..+..|.. ...+...+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~---------------------------~~pt~g~~----~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ES---------------------------VVPTTGFN----SVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--cc---------------------------ccccCCcc----eEEEeeCCeEEEE
Confidence 899999999999999999843211 00 00111211 1224456788999
Q ss_pred EeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEecccccccchhHHHH
Q 009378 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRFDS 427 (536)
Q Consensus 349 IDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINKiDl~~~~~e~~ee 427 (536)
|||||+..|...+..+++.+|++|||+|++... .+.....++..++.. .++| +|||+||+|+... ....+
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~------s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~--~~~~~ 119 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE------RLPLARQELHQLLQHPPDLP-LVVLANKQDLPAA--RSVQE 119 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCC--CCHHH
Confidence 999999999888888999999999999998642 111111222223322 3455 9999999998643 22233
Q ss_pred HHHHH--HHHHHHcCCCCCCccEEEEEccc------CCCccc
Q 009378 428 IKVQL--GTFLRSCGFKDASLTWIPLSALE------NQNLVT 461 (536)
Q Consensus 428 i~~~L--~~~l~~~g~~~~~i~vipvSA~~------GenI~e 461 (536)
+...+ ..+.+ ...+.++++||++ ++||.+
T Consensus 120 i~~~~~~~~~~~-----~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 120 IHKELELEPIAR-----GRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHhCChhhcC-----CCceEEEEeeecCCCChhHHHHHHH
Confidence 32222 22222 2345789999998 888875
No 194
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=4.5e-16 Score=141.07 Aligned_cols=130 Identities=22% Similarity=0.239 Sum_probs=82.3
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|++|+|||||+++|++.... ...|.. +++.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-----------------------------------~~~t~~-----~~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-----------------------------------YKKTQA-----VEYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-----------------------------------ccccee-----EEEcC---e
Confidence 7999999999999999999843110 000111 11111 6
Q ss_pred EEeCCCcc----cchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 348 VLDSPGHK----DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 348 LIDTPGh~----df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
+|||||+. .+...+...++.+|++|+|+|++.+... +...++ .....| +|+|+||+|+... ..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~--------~~~~~~---~~~~~p-~ilv~NK~Dl~~~-~~ 105 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESR--------FPPGFA---SIFVKP-VIGLVTKIDLAEA-DV 105 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcC--------CChhHH---HhccCC-eEEEEEeeccCCc-cc
Confidence 89999972 3344444567899999999999876321 111222 222344 9999999998742 12
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. +.+..+++..++ .+++++||++|+|+.+
T Consensus 106 ~~----~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 106 DI----ERAKELLETAGA----EPIFEISSVDEQGLEA 135 (142)
T ss_pred CH----HHHHHHHHHcCC----CcEEEEecCCCCCHHH
Confidence 22 233344444443 2689999999999986
No 195
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=1.5e-15 Score=146.53 Aligned_cols=144 Identities=18% Similarity=0.210 Sum_probs=88.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC-
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 343 (536)
..++|+|+|++|+|||||+++|++....+.. ..+.|.......+.+.+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 88 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAED-------------------------------QLFATLDPTTRRLRLPDG 88 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCC-------------------------------ccceeccceeEEEEecCC
Confidence 3579999999999999999999954211110 01112222222233333
Q ss_pred eEEEEEeCCCcccc-h-------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEE
Q 009378 344 YHVVVLDSPGHKDF-V-------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAV 412 (536)
Q Consensus 344 ~~i~LIDTPGh~df-~-------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVI 412 (536)
..+.||||||+.+. . ..+...+..+|++|+|+|++.+.. ......+..++..+ +.| +|||+
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~-------~~~~~~~~~~l~~~~~~~~~-viiV~ 160 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDY-------EEQIETVEKVLKELGAEDIP-MILVL 160 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCCh-------hhHHHHHHHHHHHcCcCCCC-EEEEE
Confidence 38999999997331 1 112233567999999999986521 12233334444443 344 99999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
||+|+... .... ..+.. ...+++++||++|.|+.+
T Consensus 161 NK~Dl~~~--~~~~-------~~~~~-----~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 161 NKIDLLDD--EELE-------ERLEA-----GRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EccccCCh--HHHH-------HHhhc-----CCCceEEEEcCCCCCHHH
Confidence 99999743 1111 11211 234789999999999986
No 196
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.65 E-value=1.4e-15 Score=158.54 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=93.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+....|+|||.+|||||||+++|+.....+... +..|.......+...+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y-------------------------------~fTT~~p~ig~v~~~~ 203 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADY-------------------------------PFTTLVPNLGVVRVDD 203 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccCC-------------------------------CCCccCCEEEEEEeCC
Confidence 445679999999999999999998543222111 1112221122233344
Q ss_pred -eEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-CCCcEEEEEec
Q 009378 344 -YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNK 414 (536)
Q Consensus 344 -~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~vp~vIVVINK 414 (536)
..++|+||||+.. +....++.+..++++|+|||++.......++.+.....++......+ ..| +|||+||
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK 282 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNK 282 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeC
Confidence 7899999999642 33445566778999999999985311111111222222222222222 344 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+... ...+++.+.+ .+.++ ++++++||++++||.+
T Consensus 283 ~DL~~~--~~~~~~~~~l---~~~~~-----~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 283 IDLLDE--EELAELLKEL---KKALG-----KPVFPISALTGEGLDE 319 (329)
T ss_pred ccCCCh--HHHHHHHHHH---HHHcC-----CcEEEEEccCCcCHHH
Confidence 999742 2233333332 22333 3689999999999986
No 197
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.65 E-value=1.5e-15 Score=142.61 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=94.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+|||||+.++++..... . ..+ .+.........+......+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~--~---------------------------~~~-t~~~~~~~~~~~~~~~~~~ 50 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT--E---------------------------YVP-TAFDNFSVVVLVDGKPVRL 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--C---------------------------CCC-ceeeeeeEEEEECCEEEEE
Confidence 579999999999999999997421100 0 000 0100111112233334678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchh-
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD- 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e- 423 (536)
.||||||+..|...+...++.+|++|+|+|++... .+.......+..+.. .++| +|+|+||+|+......
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~------sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 123 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS------SFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVL 123 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHH------HHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHH
Confidence 89999999998887777889999999999998642 122222223333333 2455 9999999998642110
Q ss_pred -------HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 -------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 -------~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...-..++...+.+..+. .+|+++||++|.|+.+
T Consensus 124 ~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~ 164 (173)
T cd04130 124 IQLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNLKE 164 (173)
T ss_pred HHHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCHHH
Confidence 000011233344444432 3689999999999986
No 198
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.64 E-value=4.2e-15 Score=138.34 Aligned_cols=149 Identities=18% Similarity=0.210 Sum_probs=93.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+|||||+++|+...... ...+..|.........+......+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~l 51 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-----------------------------SHISTIGVDFKMKTIEVDGIKVRI 51 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEEE
Confidence 479999999999999999998421100 001112221111222222234678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||+.+|...+...++.+|++|+|+|.+... .++ .. ...+..+... .+| +++|.||+|+......
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---sf~---~~-~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v 123 (161)
T cd04117 52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISSER---SYQ---HI-MKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQV 123 (161)
T ss_pred EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHH---HHH---HH-HHHHHHHHHhCCCCCe-EEEEEECcccccccCC
Confidence 89999999998888888889999999999988642 121 11 2222222222 344 9999999998643221
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. ++...+.+.++ .+|+++||++|.|+.+
T Consensus 124 ~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 124 GD----EQGNKLAKEYG-----MDFFETSACTNSNIKE 152 (161)
T ss_pred CH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11 22333333344 3789999999999986
No 199
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.64 E-value=1.3e-15 Score=143.53 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=92.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+|+|.+|+|||||+++|++........ . ..+... .....+......+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~-----------------------~------t~~~~~-~~~~~~~~~~~~~ 51 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY-----------------------P------TIENTF-SKIIRYKGQDYHL 51 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccC-----------------------c------chhhhE-EEEEEECCEEEEE
Confidence 589999999999999999998432110000 0 000000 0111122234568
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
.||||||+.+|......++..++++|+|+|.+... . +.........+++. .++| +|+|+||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~ 124 (180)
T cd04137 52 EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK---S---FEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQV 124 (180)
T ss_pred EEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCcc
Confidence 99999999998888778888999999999998642 1 11111222223332 3455 9999999998742211
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. ..+..+.+.++ ++++++||++|.|+.+
T Consensus 125 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 125 ST----EEGKELAESWG-----AAFLESSARENENVEE 153 (180)
T ss_pred CH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 11 12233333333 3789999999999986
No 200
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.64 E-value=2.1e-15 Score=142.71 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=94.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+|||||+.+++..... .. . .+..+..... ...+......+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~-------------------------~--~~t~~~~~~~-~~~~~~~~~~l 51 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GE-------------------------Y--IPTVFDNYSA-NVMVDGKPVNL 51 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--Cc-------------------------C--CCcceeeeEE-EEEECCEEEEE
Confidence 68999999999999999999842110 00 0 0000111111 11233344678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+..|...+...++.+|++|||+|.+... . +......++..+... ++| +|||+||+|+... ...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s---f~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~-~~~ 123 (174)
T cd01871 52 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---S---FENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD-KDT 123 (174)
T ss_pred EEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccC-hhh
Confidence 89999999999887778889999999999998642 1 222212222222222 345 9999999998632 111
Q ss_pred HHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+.+ .++...+.+.++. ++|+++||++|+|+.+
T Consensus 124 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 165 (174)
T cd01871 124 IEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQKGLKT 165 (174)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcCC----cEEEEecccccCCHHH
Confidence 1111 1233344444442 4789999999999986
No 201
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=1.8e-15 Score=160.99 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=107.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC-e
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 344 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~ 344 (536)
...|+|||.+|||||||+|+|+.....+... +++|.......+.... .
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~-------------------------------p~TT~~p~~Giv~~~~~~ 207 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADY-------------------------------PFTTLVPNLGVVRVDDER 207 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCC-------------------------------CCCccCcEEEEEEeCCCc
Confidence 4469999999999999999999654322111 2223222222233343 4
Q ss_pred EEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-----CCCcEEEEE
Q 009378 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAV 412 (536)
Q Consensus 345 ~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-----~vp~vIVVI 412 (536)
.|+|+||||... +...++..+..+|++|+|||+....... ........+..+... ..| +|||+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d----~~e~~~~l~~eL~~~~~~L~~kP-~IlVl 282 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSD----PVENARIIINELEKYSPKLAEKP-RWLVF 282 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccC----hHHHHHHHHHHHHhhhhhhcCCC-EEEEE
Confidence 699999999543 3345566788899999999987210000 112223333333332 345 89999
Q ss_pred ecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcC-------
Q 009378 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR------- 485 (536)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~------- 485 (536)
||+|+.. ...+ .+.+..+.+.+++ ..+++++||++++|+.+ |++.|....
T Consensus 283 NKiDl~~--~~el---~~~l~~l~~~~~~---~~~Vi~ISA~tg~GIde---------------Ll~~I~~~L~~~~~~~ 339 (390)
T PRK12298 283 NKIDLLD--EEEA---EERAKAIVEALGW---EGPVYLISAASGLGVKE---------------LCWDLMTFIEENPREE 339 (390)
T ss_pred eCCccCC--hHHH---HHHHHHHHHHhCC---CCCEEEEECCCCcCHHH---------------HHHHHHHHhhhCcccC
Confidence 9999873 2222 2233333333332 12579999999999986 555553221
Q ss_pred CCCCCCCCCeeEEEEEEEEeC
Q 009378 486 PPPREFSKPLLMPICDVLKSQ 506 (536)
Q Consensus 486 ~~~~~~~~P~~~~I~d~~~~~ 506 (536)
++....+.|.++.+.++++..
T Consensus 340 ~~~~~td~~~~~~~~EiiRE~ 360 (390)
T PRK12298 340 AEEAEAPEKVEFMWDDYHREQ 360 (390)
T ss_pred CcccccCccHHHHHHHHHHHH
Confidence 122334566666666666544
No 202
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.64 E-value=9.6e-16 Score=162.28 Aligned_cols=144 Identities=22% Similarity=0.204 Sum_probs=106.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
..-++|+|+|.||+|||||+|+|++...+|... .+|+|.++...++..++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd------------------------------I~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD------------------------------IAGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecC------------------------------CCCCccceEEEEEEECC
Confidence 446899999999999999999999877766554 38999999999999999
Q ss_pred eEEEEEeCCCccc---c-----hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 344 YHVVVLDSPGHKD---F-----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 344 ~~i~LIDTPGh~d---f-----~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
+.+.|+||+|..+ . +......+.+||++|||+|++.+ +.......+. +...+.| +++|+||+
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~--------~~~~d~~~~~-~~~~~~~-~i~v~NK~ 334 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP--------LDKEDLALIE-LLPKKKP-IIVVLNKA 334 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CchhhHHHHH-hcccCCC-EEEEEech
Confidence 9999999999543 2 33445677889999999999975 2233444444 2223344 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+...... ..+ . .. ...+++.+||++|+|+..
T Consensus 335 DL~~~~~~------~~~-~----~~---~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 335 DLVSKIEL------ESE-K----LA---NGDAIISISAKTGEGLDA 366 (454)
T ss_pred hccccccc------chh-h----cc---CCCceEEEEecCccCHHH
Confidence 99853221 011 1 11 123679999999999986
No 203
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.64 E-value=8.5e-16 Score=143.54 Aligned_cols=131 Identities=24% Similarity=0.271 Sum_probs=85.7
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+++|++|+|||||+++|.+.... .+ .+..+ .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--------------------------------~~---~~~~v---~~~~~----~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--------------------------------AR---KTQAV---EFNDK----G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--------------------------------Cc---cceEE---EECCC----C
Confidence 6999999999999999998742100 00 11111 11111 2
Q ss_pred EEeCCCc----ccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 348 VLDSPGH----KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 348 LIDTPGh----~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
+|||||. .++...+..++..+|++|+|+|++.+.. ....+.+.+ ..+.| +++++||+|+....
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s--------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~-- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES--------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD-- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc--------ccCHHHHhc--cCCCC-eEEEEEccccCccc--
Confidence 6999995 4566666777889999999999987621 111122221 12445 99999999986421
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. ..+..+++..++. .+++++||++|+|+.+
T Consensus 108 -~----~~~~~~~~~~~~~---~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 108 -V----AATRKLLLETGFE---EPIFELNSHDPQSVQQ 137 (158)
T ss_pred -H----HHHHHHHHHcCCC---CCEEEEECCCccCHHH
Confidence 2 2344555555652 4889999999999986
No 204
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.4e-15 Score=166.75 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=138.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.....||.|+.|+++|||||+..|+...+.|.++-..+ ..++|....|+.+|||+......+..+
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagk---------------irfld~redeq~rgitmkss~is~~~~ 70 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGK---------------IRFLDTREDEQTRGITMKSSAISLLHK 70 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccc---------------eeeccccchhhhhceeeeccccccccC
Confidence 34578999999999999999999998888887764322 236899999999999999888777778
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc---
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--- 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~--- 419 (536)
++.++|||+|||.+|......+.+.+|+++++||+.+| +..||...++++-.-+.. +|+|+||||++-
T Consensus 71 ~~~~nlidspghvdf~sevssas~l~d~alvlvdvveg--------v~~qt~~vlrq~~~~~~~-~~lvinkidrl~~el 141 (887)
T KOG0467|consen 71 DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEG--------VCSQTYAVLRQAWIEGLK-PILVINKIDRLITEL 141 (887)
T ss_pred ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccc--------cchhHHHHHHHHHHccCc-eEEEEehhhhHHHHH
Confidence 99999999999999999999999999999999999998 678999999988888887 799999999431
Q ss_pred --cchhHHHHHH---HHHHHHHH-------------------HcCCCCCCccEEEEEcccCCCcc
Q 009378 420 --YSKDRFDSIK---VQLGTFLR-------------------SCGFKDASLTWIPLSALENQNLV 460 (536)
Q Consensus 420 --~~~e~~eei~---~~L~~~l~-------------------~~g~~~~~i~vipvSA~~GenI~ 460 (536)
.+.+.+..+. +++...+. ..-|.+..-.++..||..|.++.
T Consensus 142 ~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 142 KLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFG 206 (887)
T ss_pred hcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEeccccccc
Confidence 1234443333 33333222 22344455578999999999863
No 205
>PLN03108 Rab family protein; Provisional
Probab=99.64 E-value=4.3e-15 Score=144.96 Aligned_cols=150 Identities=18% Similarity=0.174 Sum_probs=97.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++|+|+|.+|+|||||+++|++....... .+..+.+.......+......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~-----------------------------~~ti~~~~~~~~i~~~~~~i~ 56 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------------------DLTIGVEFGARMITIDNKPIK 56 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------------------CCCccceEEEEEEEECCEEEE
Confidence 589999999999999999999843211100 011222222222333333456
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~~~ 422 (536)
+.||||||++.|...+...++.+|++|+|+|++... . +. .....+..+.. ..+| +|+|+||+|+.....
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~---s---~~-~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~ 128 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---T---FN-HLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 128 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH---H---HH-HHHHHHHHHHHhcCCCCc-EEEEEECccCccccC
Confidence 889999999999888888889999999999998642 1 11 11122222222 2344 999999999874322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ++...+++..++ +++++||++|.|+.+
T Consensus 129 ~~~----~~~~~~~~~~~~-----~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 129 VST----EEGEQFAKEHGL-----IFMEASAKTAQNVEE 158 (210)
T ss_pred CCH----HHHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 222 233344444443 789999999999986
No 206
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.64 E-value=2.9e-15 Score=136.96 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=93.4
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|++|+|||||+++|++... .... ..... ........+......+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~----------------------~~~~~------~~~~~~~~~~~~~~~~~ 50 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEY----------------------DPTIE------DSYRKTIVVDGETYTLD 50 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCc----------------------CCChh------HeEEEEEEECCEEEEEE
Confidence 589999999999999999985321 0100 00000 00111111222346789
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC--CCcEEEEEecccccccchhHH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~--vp~vIVVINKiDl~~~~~e~~ 425 (536)
+||+||+..+.......+..+|++|+|+|...... +.........+..... ..|+++|+||+|+........
T Consensus 51 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 124 (160)
T cd00876 51 ILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES------FEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSK 124 (160)
T ss_pred EEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecH
Confidence 99999999988888888899999999999886421 1111122222222222 234999999999975222222
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+.+..+.+..+ .+++++||++|.|+.+
T Consensus 125 ----~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 125 ----EEGKALAKEWG-----CPFIETSAKDNINIDE 151 (160)
T ss_pred ----HHHHHHHHHcC-----CcEEEeccCCCCCHHH
Confidence 33444444444 3789999999999986
No 207
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.64 E-value=4e-15 Score=142.45 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=93.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+|+|..|+|||||+++|++...... ..+..+... .....+......+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~-----------------------------~~~t~~~~~-~~~i~~~~~~~~l 50 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-----------------------------YEPTVFENY-VHDIFVDGLHIEL 50 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc-----------------------------cCCcceeee-EEEEEECCEEEEE
Confidence 3799999999999999999984221100 000011111 0111223334678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||++.|...+...++.+|++|||+|.+... . +.......+..+... ++| +|||+||+|+.......
T Consensus 51 ~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~---s---f~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~ 123 (189)
T cd04134 51 SLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD---S---LENVESKWLGEIREHCPGVK-LVLVALKCDLREARNER 123 (189)
T ss_pred EEEECCCChhccccccccccCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhH
Confidence 99999999998777777788999999999988642 1 211111223333332 455 99999999997532111
Q ss_pred H--HH------HHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 F--DS------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~--ee------i~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. .. ..++...+.+..+ .++++++||++|+|+.+
T Consensus 124 ~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e 164 (189)
T cd04134 124 DDLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNE 164 (189)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHH
Confidence 0 00 0122233333333 24789999999999986
No 208
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.64 E-value=2.5e-15 Score=143.03 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=97.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..++|||+|+.+++..... . ...+.-+..... ...++.....+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~---------------------------~~~~Ti~~~~~~-~~~~~~~~v~l 51 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--T---------------------------DYIPTVFDNFSA-NVSVDGNTVNL 51 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--C---------------------------CCCCcceeeeEE-EEEECCEEEEE
Confidence 68999999999999999999842110 0 001111111111 12233345788
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchh-
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD- 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e- 423 (536)
.||||+|+++|...+..+++.+|++|||+|.+... . +......++..++. -++| +|||.||+|+.+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~---S---f~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~ 124 (176)
T cd04133 52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRA---S---YENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYL 124 (176)
T ss_pred EEEECCCCccccccchhhcCCCcEEEEEEEcCCHH---H---HHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhh
Confidence 99999999999888888899999999999998642 1 22211222233332 2445 9999999999642110
Q ss_pred -----HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 -----RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 -----~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...-..++...+.+..+. ..|+++||++|.||.+
T Consensus 125 ~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 125 ADHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKA 163 (176)
T ss_pred hhccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHH
Confidence 000112344445554443 1589999999999986
No 209
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=3.3e-15 Score=140.47 Aligned_cols=154 Identities=16% Similarity=0.039 Sum_probs=94.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.++|+|+|..|+|||||+++|++....+ . ...+..+.........+....
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~-~---------------------------~~~~T~~~~~~~~~~~~~~~~ 53 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL-N---------------------------AYSPTIKPRYAVNTVEVYGQE 53 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCc-c---------------------------cCCCccCcceEEEEEEECCeE
Confidence 456899999999999999999998432110 0 001111211122222233334
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEecccccccch
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINKiDl~~~~~ 422 (536)
..+.+||++|...+.......+..+|++|||+|++... . + ....+++..+.. .++| +|+|+||+|+.....
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~---s---~-~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~ 125 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK---S---F-SYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQ 125 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH---H---H-HHHHHHHHHhccCCCCe-EEEEEEccccccccc
Confidence 67889999999988777777789999999999997541 0 1 111222222211 2455 999999999864221
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. ......+.+.+++. .++++||++|+|+.+
T Consensus 126 ~~----~~~~~~~~~~~~~~----~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 126 RY----EVQPDEFCRKLGLP----PPLHFSSKLGDSSNE 156 (169)
T ss_pred cc----ccCHHHHHHHcCCC----CCEEEEeccCccHHH
Confidence 11 11223333444541 248999999999986
No 210
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=3e-15 Score=162.68 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=96.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+....|+|||.+|||||||+++|++....+.. .+++|+......+...+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIad-------------------------------ypfTTl~P~lGvv~~~~ 205 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIAD-------------------------------YPFTTLVPNLGVVQAGD 205 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccc-------------------------------cCcccccceEEEEEECC
Confidence 44578999999999999999999864332211 13344444444455677
Q ss_pred eEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCc-ccccccchhhHHHHHHHHHH----------HcCC
Q 009378 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGS-FEVGMNTAKGLTREHAQLIR----------SFGV 405 (536)
Q Consensus 344 ~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~-~e~~~~~~~~qt~e~l~ll~----------~~~v 405 (536)
..|+|+||||... .....+..+..+|++|+|||++... ....+..+.....++..+.. ..+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 8899999999532 2233456677899999999997421 00111111112223322221 2345
Q ss_pred CcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 406 p~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
| +|||+||+|+... .+. .+.+...+...+ +++++|||++++||.+
T Consensus 286 P-~IVVlNKiDL~da-~el----~e~l~~~l~~~g-----~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 286 P-RLVVLNKIDVPDA-REL----AEFVRPELEARG-----WPVFEVSAASREGLRE 330 (500)
T ss_pred C-EEEEEECccchhh-HHH----HHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 5 8999999999742 122 222333344334 3789999999999987
No 211
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.63 E-value=1.7e-15 Score=142.16 Aligned_cols=147 Identities=21% Similarity=0.250 Sum_probs=93.2
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+++|..|+|||||+++|.+.. .. ...+..|.+ ...+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~---~~---------------------------~~~~t~g~~----~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI---PK---------------------------KVAPTVGFT----PTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC---Cc---------------------------cccCcccce----EEEEEECCEEEE
Confidence 48999999999999999998431 00 001112222 123445778999
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHH-HHHH---cCCCcEEEEEecccccccchh
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS---FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~-ll~~---~~vp~vIVVINKiDl~~~~~e 423 (536)
||||||+..+...+..+++.+|++|||+|++... . +. .....+. ++.. .++| ++||+||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~---s---~~-~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-- 116 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD---R---VQ-EVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-- 116 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh---H---HH-HHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC--
Confidence 9999999999888888999999999999998641 1 11 1222222 2222 2455 99999999987532
Q ss_pred HHHHHHHHH--HHHHHHcCCCCCCccEEEEEcccC------CCccc
Q 009378 424 RFDSIKVQL--GTFLRSCGFKDASLTWIPLSALEN------QNLVT 461 (536)
Q Consensus 424 ~~eei~~~L--~~~l~~~g~~~~~i~vipvSA~~G------enI~e 461 (536)
...++.+.+ ..+.+.. ...++++++||++| .||.+
T Consensus 117 ~~~~i~~~~~l~~~~~~~---~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 117 LGADVIEYLSLEKLVNEN---KSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred CHHHHHHhcCcccccCCC---CceEEEEEeEceeCCCCccccCHHH
Confidence 122222221 1111111 12357899999998 67765
No 212
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.63 E-value=2.6e-15 Score=157.87 Aligned_cols=142 Identities=20% Similarity=0.214 Sum_probs=90.3
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-CCe
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 344 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 344 (536)
.++|+|+|.+|+|||||+|+|++....+.. ..+.|.+.....+.. .+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~-------------------------------~~~tT~d~~~~~i~~~~~~ 237 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAAD-------------------------------QLFATLDPTTRRLDLPDGG 237 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeecc-------------------------------CCccccCCEEEEEEeCCCc
Confidence 478999999999999999999964321111 122333333333444 457
Q ss_pred EEEEEeCCCc-ccc-------hhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEe
Q 009378 345 HVVVLDSPGH-KDF-------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVN 413 (536)
Q Consensus 345 ~i~LIDTPGh-~df-------~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVIN 413 (536)
.+.||||||+ ... ...+...+..+|++|+|+|++.+.. ..+...+..++..+ +.| +|+|+|
T Consensus 238 ~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~-------~~~~~~~~~~L~~l~~~~~p-iIlV~N 309 (351)
T TIGR03156 238 EVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDR-------EEQIEAVEKVLEELGAEDIP-QLLVYN 309 (351)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCch-------HHHHHHHHHHHHHhccCCCC-EEEEEE
Confidence 8999999997 221 1223445778999999999987521 12222333444544 445 999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+|+... ..+. ... . + ..+++++||++|+|+.+
T Consensus 310 K~Dl~~~--~~v~-------~~~-~-~----~~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 310 KIDLLDE--PRIE-------RLE-E-G----YPEAVFVSAKTGEGLDL 342 (351)
T ss_pred eecCCCh--HhHH-------HHH-h-C----CCCEEEEEccCCCCHHH
Confidence 9999742 1111 111 1 1 12579999999999985
No 213
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.63 E-value=5.5e-15 Score=138.31 Aligned_cols=153 Identities=15% Similarity=0.109 Sum_probs=92.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+|+|..|+|||||+++|++....... .+..+... .....+......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~-----------------------------~~t~~~~~-~~~~~~~~~~~~l 51 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-----------------------------VPTVFENY-VADIEVDGKQVEL 51 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------------------CCccccce-EEEEEECCEEEEE
Confidence 57999999999999999999843211000 00011111 1112233344578
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||||+++|...+...+..+|++++|+|++... . +.......+..++. .++| +|+|+||+|+.... ..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~---s---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~ 123 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---S---LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDE-HT 123 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccCh-hh
Confidence 99999999988777667788999999999988531 1 11111112222222 2455 99999999986421 11
Q ss_pred HHHH---------HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 425 FDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 425 ~eei---------~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+++ ......+.+..+ ..+++++||++|.|+.+
T Consensus 124 ~~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 165 (175)
T cd01870 124 RRELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGVRE 165 (175)
T ss_pred hhhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCHHH
Confidence 1111 122333333333 23789999999999986
No 214
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.63 E-value=4.7e-15 Score=140.78 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=103.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|+|+|..|||||||+++|...... ...+..|. ....+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~------------------------------~~~pT~g~----~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS------------------------------ETIPTIGF----NIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE------------------------------EEEEESSE----EEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc------------------------------ccCccccc----ccceeeeCc
Confidence 67899999999999999999999732110 11122233 333455688
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.|||.+|+..+...+..++..+|++|||||++... .+.....++..++.. .++| ++|++||.|+...
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~------~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~ 130 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE------RLQEAKEELKELLNDPELKDIP-ILILANKQDLPDA 130 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG------GHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTS
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEecccce------eecccccchhhhcchhhcccce-EEEEeccccccCc
Confidence 99999999999999888888999999999999998541 122222222233332 2344 9999999998753
Q ss_pred chhHHHHHHHHHHHHHHHcCCC-CCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~-~~~i~vipvSA~~GenI~e 461 (536)
...+++. ..+....+. ...+.++++||++|+|+.+
T Consensus 131 --~~~~~i~----~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 131 --MSEEEIK----EYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp --STHHHHH----HHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred --chhhHHH----hhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 2223333 223222232 5577899999999999986
No 215
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.62 E-value=1.9e-15 Score=163.89 Aligned_cols=139 Identities=22% Similarity=0.191 Sum_probs=94.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+|+|.+|+|||||+|+|++....+. ....|+|.+.....+...+.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------------~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIV------------------------------TDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCcccccEEEEEEECCe
Confidence 347899999999999999999995432211 12255666665566667888
Q ss_pred EEEEEeCCCcccchh--------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 345 ~i~LIDTPGh~df~~--------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.+.||||||+.++.. .+...+..+|++|+|+|++.+.. ......+.. ..+.| +|+|+||+|
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s--------~~~~~~l~~--~~~~p-iiiV~NK~D 332 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT--------EEDDEILEE--LKDKP-VIVVLNKAD 332 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC--------hhHHHHHHh--cCCCC-cEEEEEhhh
Confidence 999999999865432 23456788999999999986521 111121111 23455 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+.... ... .. ...+++++||++|+|+.+
T Consensus 333 L~~~~--~~~----------~~-----~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 333 LTGEI--DLE----------EE-----NGKPVIRISAKTGEGIDE 360 (449)
T ss_pred ccccc--hhh----------hc-----cCCceEEEEeeCCCCHHH
Confidence 97421 110 11 123679999999999986
No 216
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.62 E-value=2.2e-15 Score=139.95 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=88.3
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|.+|+|||||+++|+..... ... ..+ .+ ........+......+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~----------------------~~t-----~~-~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEY----------------------DPN-----LE-SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--ccc----------------------CCC-----hH-HhceEEEEECCEEEEEE
Confidence 4899999999999999999842110 000 000 00 00011112333445688
Q ss_pred EEeCCCccc-chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-----cCCCcEEEEEecccccccc
Q 009378 348 VLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 348 LIDTPGh~d-f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-----~~vp~vIVVINKiDl~~~~ 421 (536)
||||||+.. +...+...++.+|++|+|+|++... .++ .....+..+.. .++| +|+|+||+|+....
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRS---SFD----EISQLKQLIREIKKRDREIP-VILVGNKADLLHYR 122 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhC
Confidence 999999885 3445566788899999999998652 111 11222222222 2455 99999999986421
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccC-CCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~G-enI~e 461 (536)
.... +....+.+..+. +++++||++| .|+.+
T Consensus 123 ~v~~----~~~~~~~~~~~~-----~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 123 QVST----EEGEKLASELGC-----LFFEVSAAEDYDGVHS 154 (165)
T ss_pred ccCH----HHHHHHHHHcCC-----EEEEeCCCCCchhHHH
Confidence 1111 223333344443 7899999999 48986
No 217
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=9e-15 Score=140.15 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=103.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..+-|+++|+.|+|||||||+|++...... ....+|.|..+.++.+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LAr-----------------------------tSktPGrTq~iNff~~~~--- 70 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLAR-----------------------------TSKTPGRTQLINFFEVDD--- 70 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceee-----------------------------cCCCCCccceeEEEEecC---
Confidence 456799999999999999999997653221 123478888877766543
Q ss_pred EEEEEeCCCc----------ccchhhHhhhc---ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEE
Q 009378 345 HVVVLDSPGH----------KDFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (536)
Q Consensus 345 ~i~LIDTPGh----------~df~~~~~~~l---~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVV 411 (536)
.+.|+|.||. +.+......++ .+..+++++||+.++ +....+++++++...++| ++||
T Consensus 71 ~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~--------~~~~D~em~~~l~~~~i~-~~vv 141 (200)
T COG0218 71 ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP--------PKDLDREMIEFLLELGIP-VIVV 141 (200)
T ss_pred cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC--------CcHHHHHHHHHHHHcCCC-eEEE
Confidence 2899999991 12222222232 347889999999987 556788999999999999 9999
Q ss_pred EecccccccchhHHHHHHHHHHHHHHHcCCCCCCc-cEEEEEcccCCCccc
Q 009378 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASL-TWIPLSALENQNLVT 461 (536)
Q Consensus 412 INKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i-~vipvSA~~GenI~e 461 (536)
+||+|++... ........+. +.+.+..... .++..|+.++.|+++
T Consensus 142 ~tK~DKi~~~--~~~k~l~~v~---~~l~~~~~~~~~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 142 LTKADKLKKS--ERNKQLNKVA---EELKKPPPDDQWVVLFSSLKKKGIDE 187 (200)
T ss_pred EEccccCChh--HHHHHHHHHH---HHhcCCCCccceEEEEecccccCHHH
Confidence 9999999532 2221222222 2223222211 178899999999876
No 218
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.62 E-value=7.4e-15 Score=140.53 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=98.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+++|..++|||||+.+|+..... . ...+.-+.... ....++...
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~--~---------------------------~~~pT~~~~~~-~~~~~~~~~ 52 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--E---------------------------NYVPTVFENYT-ASFEIDTQR 52 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCC--C---------------------------ccCCceeeeeE-EEEEECCEE
Confidence 34688999999999999999999842110 0 00001111111 112233445
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||+|.+.|...+..+++.+|++|||+|.+... .|+ ......+..++.. ..| +|||.||+|+....
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~---Sf~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~ 125 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDL 125 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHHCCCCC-EEEEeEChhhhcCh
Confidence 67999999999999888888899999999999998642 121 1112222222222 344 99999999986311
Q ss_pred hhH--------HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCC-ccc
Q 009378 422 KDR--------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (536)
Q Consensus 422 ~e~--------~eei~~~L~~~l~~~g~~~~~i~vipvSA~~Gen-I~e 461 (536)
... ..-..++...+.+..++ ++|+++||++|+| |.+
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~ 170 (182)
T cd04172 126 TTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 170 (182)
T ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHH
Confidence 000 00112345555555553 3789999999998 986
No 219
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.62 E-value=6.1e-15 Score=132.54 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=91.5
Q ss_pred EEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-CeEEEEE
Q 009378 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (536)
Q Consensus 271 IvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~i~LI 349 (536)
|+|++|+|||||+++|++..... .....+.+.......+... ...+.||
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999998543221 0111233333333333333 6789999
Q ss_pred eCCCcccchh-------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 350 DSPGHKDFVP-------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 350 DTPGh~df~~-------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
||||+..+.. .+...++.+|++++|+|+.... ......+.......+.| +++|+||+|+...
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~--------~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~-- 119 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRA--------DEEEEKLLELLRERGKP-VLLVLNKIDLLPE-- 119 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHhcCCe-EEEEEEccccCCh--
Confidence 9999776543 3344678899999999999762 12222234455556776 9999999999843
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
........ ............+++++||+++.|+.+
T Consensus 120 ~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 120 EEEEELLE----LRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred hhHHHHHH----HHHhhcccccCCceEEEeeeccCCHHH
Confidence 22222111 011111122345889999999999975
No 220
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=5.9e-15 Score=158.22 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=91.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-C
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-N 343 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~ 343 (536)
....|+|||.+||||||||++|++....+... +++|.......+... +
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~y-------------------------------pfTTl~PnlG~v~~~~~ 205 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIANY-------------------------------HFTTLVPNLGVVETDDG 205 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccccC-------------------------------CcceeceEEEEEEEeCC
Confidence 34579999999999999999999644332211 223333333333444 6
Q ss_pred eEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-----cCCCcEEEE
Q 009378 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVA 411 (536)
Q Consensus 344 ~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-----~~vp~vIVV 411 (536)
..|+|+||||... +....+..+..++++|+|||++...... .......+...+.. .+.| +|||
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~d----p~e~~~~i~~EL~~y~~~L~~kP-~IVV 280 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRD----PIEDYEKINKELKLYNPRLLERP-QIVV 280 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCC----hHHHHHHHHHHHhhhchhccCCc-EEEE
Confidence 7899999999532 2344456677799999999997421001 11122222222322 2455 8999
Q ss_pred EecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 412 INKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+||+|+.. .... +..+.+.++ .+++++||++++|+.+
T Consensus 281 ~NK~DL~~-~~e~-------l~~l~~~l~-----~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 281 ANKMDLPE-AEEN-------LEEFKEKLG-----PKVFPISALTGQGLDE 317 (424)
T ss_pred EeCCCCcC-CHHH-------HHHHHHHhC-----CcEEEEeCCCCCCHHH
Confidence 99999842 1122 222333333 3689999999999986
No 221
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.61 E-value=3.9e-15 Score=138.67 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=86.0
Q ss_pred EEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-CeEEEEE
Q 009378 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (536)
Q Consensus 271 IvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~i~LI 349 (536)
|+|++|+|||||+++|++....+. ...+.|.......+... +..+.||
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA-------------------------------NYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc-------------------------------CCCceeecCcceEEEcCCCCeEEEE
Confidence 589999999999999995432110 01223333222334455 7889999
Q ss_pred eCCCccc-------chhhHhhhcccCCeEEEEeecCCCccc---ccccchhhHHHHHHHHHH------HcCCCcEEEEEe
Q 009378 350 DSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFE---VGMNTAKGLTREHAQLIR------SFGVDQLIVAVN 413 (536)
Q Consensus 350 DTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e---~~~~~~~~qt~e~l~ll~------~~~vp~vIVVIN 413 (536)
||||+.+ +...+...+..+|++++|+|+...... ..+........+...... ..+.| +++|+|
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~N 128 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLN 128 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEE
Confidence 9999633 222345567789999999999864100 000001111111111111 13455 999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+|+... ....... ...... ....+++++||++|.|+.+
T Consensus 129 K~Dl~~~--~~~~~~~--~~~~~~-----~~~~~~~~~Sa~~~~gl~~ 167 (176)
T cd01881 129 KIDLDDA--EELEEEL--VRELAL-----EEGAEVVPISAKTEEGLDE 167 (176)
T ss_pred chhcCch--hHHHHHH--HHHHhc-----CCCCCEEEEehhhhcCHHH
Confidence 9999742 2222111 111111 1234689999999999985
No 222
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=8.7e-15 Score=145.48 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=98.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|..++|||+|+.+|+..... .. ..+.-+..... ...+....
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~---------------------------y~pTi~~~~~~-~i~~~~~~ 60 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYP--ET---------------------------YVPTVFENYTA-GLETEEQR 60 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCC--CC---------------------------cCCceeeeeEE-EEEECCEE
Confidence 35689999999999999999999843211 00 00001111111 12233345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-c-CCCcEEEEEecccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~-~vp~vIVVINKiDl~~~~ 421 (536)
..+.||||+|++.|......+++.+|++|||+|.+... . +......++..+.. . ++| +|||+||+|+....
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~---S---f~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~ 133 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---T---VDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDL 133 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH---H---HHHHHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 77999999999999888888899999999999998642 1 21111122222332 2 444 99999999986311
Q ss_pred hh--------HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCC-Cccc
Q 009378 422 KD--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (536)
Q Consensus 422 ~e--------~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~Ge-nI~e 461 (536)
.. ...-..++...+.+.+++ ..|+++||++|+ ||.+
T Consensus 134 ~~~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e 178 (232)
T cd04174 134 STLMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHS 178 (232)
T ss_pred chhhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHH
Confidence 00 000112355666666664 258999999998 7986
No 223
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.9e-15 Score=139.95 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=108.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhcccccccccc--ccceEEEEEEEEeec
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER--ERGITMTVAVAYFDS 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~--~~GiTi~~~~~~~~~ 341 (536)
...++|+|+|..|+|||-|+.|+... ..++.. .-|+-+......++.
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~-------------------------------~f~e~~~sTIGVDf~~rt~e~~g 55 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDD-------------------------------TFTESYISTIGVDFKIRTVELDG 55 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccC-------------------------------CcchhhcceeeeEEEEEEeeecc
Confidence 45689999999999999999999732 112222 234444444445556
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
+...+.||||+|+++|...+..+++.|+++|+|+|.+.. ..|+.+..+..|+-..+ .-++| .++|.||+|+....
T Consensus 56 k~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~---~SF~~v~~Wi~Ei~~~~-~~~v~-~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ---ESFNNVKRWIQEIDRYA-SENVP-KLLVGNKCDLTEKR 130 (205)
T ss_pred eEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH---HHhhhHHHHHHHhhhhc-cCCCC-eEEEeeccccHhhe
Confidence 677899999999999999999999999999999999963 34444444433332222 22456 79999999998543
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcc-EEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLT-WIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~-vipvSA~~GenI~e 461 (536)
....+ +.+.+...+++ + |+++||+.+.|+++
T Consensus 131 ~v~~~----~a~~fa~~~~~-----~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 131 VVSTE----EAQEFADELGI-----PIFLETSAKDSTNVED 162 (205)
T ss_pred ecCHH----HHHHHHHhcCC-----cceeecccCCccCHHH
Confidence 33332 33455555554 4 89999999999986
No 224
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.7e-15 Score=141.19 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=110.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+++|.+++|||.|+-++...... ......-||-..+....++...
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~-----------------------------~~~~sTiGIDFk~kti~l~g~~ 60 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFN-----------------------------TSFISTIGIDFKIKTIELDGKK 60 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCc-----------------------------CCccceEEEEEEEEEEEeCCeE
Confidence 45789999999999999999999843211 1112234555555555566677
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.+|||.|+++|...+-.+++.|++++||+|.+.. ..|+.+..+.+.+-+.+ .-+++ ++||.||+|+......
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne---~Sfeni~~W~~~I~e~a-~~~v~-~~LvGNK~D~~~~R~V 135 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE---KSFENIRNWIKNIDEHA-SDDVV-KILVGNKCDLEEKRQV 135 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch---HHHHHHHHHHHHHHhhC-CCCCc-EEEeeccccccccccc
Confidence 8899999999999999999999999999999999864 33333333222221111 12566 8999999999753222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. .++.+.+...+|+ .|+++||++|.||.+
T Consensus 136 ~----~e~ge~lA~e~G~-----~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 136 S----KERGEALAREYGI-----KFFETSAKTNFNIEE 164 (207)
T ss_pred c----HHHHHHHHHHhCC-----eEEEccccCCCCHHH
Confidence 2 3455566666776 899999999999987
No 225
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=7.4e-15 Score=139.86 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=95.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+++|..++|||||+++|++..... . ..+..+.... ....+......+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~--~---------------------------~~~t~~~~~~-~~~~~~~~~~~l 51 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE--T---------------------------YVPTVFENYT-ASFEIDEQRIEL 51 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC--C---------------------------cCCceEEEEE-EEEEECCEEEEE
Confidence 689999999999999999998432100 0 0000111111 112233345678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchh-
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD- 423 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e- 423 (536)
.||||||++.|.......++.+|++|||+|.+... . +......++..++.. .+| +|||.||+|+......
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~---S---f~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~ 124 (178)
T cd04131 52 SLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE---T---LDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTL 124 (178)
T ss_pred EEEECCCchhhhhcchhhcCCCCEEEEEEECCChh---h---HHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHH
Confidence 99999999999877778889999999999998642 1 222112222223332 344 9999999998631100
Q ss_pred ------H-HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCC-ccc
Q 009378 424 ------R-FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (536)
Q Consensus 424 ------~-~eei~~~L~~~l~~~g~~~~~i~vipvSA~~Gen-I~e 461 (536)
+ ..-..++...+.+..++ .+|+++||++|+| |.+
T Consensus 125 ~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~ 166 (178)
T cd04131 125 MELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRD 166 (178)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHH
Confidence 0 00012344555555553 3689999999995 986
No 226
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.60 E-value=4.3e-15 Score=139.30 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=105.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
+...++|+|+|.+|+|||+|++++++....- .. + ..-|...-.....++..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~--qy------------k---------------aTIgadFltKev~Vd~~ 56 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQ--QY------------K---------------ATIGADFLTKEVQVDDR 56 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHH--Hh------------c---------------cccchhheeeEEEEcCe
Confidence 4567999999999999999999998532110 00 0 00111111112223344
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC-----CcEEEEEecccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-----DQLIVAVNKMDA 417 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v-----p~vIVVINKiDl 417 (536)
...+.||||+|+++|.......++.+|+++||+|.+... .|+. ...++-+++.+... =|+||+.||+|+
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~---Sfe~---L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPK---SFEN---LENWRKEFLIQASPQDPETFPFVILGNKIDV 130 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCChh---hhcc---HHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence 566889999999999999889999999999999998652 2333 34444455555432 149999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ..+ ..-....+.+++..| ++|+|++||+.+.|+.+
T Consensus 131 ~~~-~~r-~VS~~~Aq~WC~s~g----nipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 131 DGG-KSR-QVSEKKAQTWCKSKG----NIPYFETSAKEATNVDE 168 (210)
T ss_pred CCC-ccc-eeeHHHHHHHHHhcC----CceeEEecccccccHHH
Confidence 642 111 112344555665554 68999999999999986
No 227
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=8.8e-15 Score=158.15 Aligned_cols=142 Identities=25% Similarity=0.233 Sum_probs=96.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+|+|++....+. ...+|+|.+.....+..++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv------------------------------s~~pgtTrd~~~~~i~~~g 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIV------------------------------SDIKGTTRDVVEGDFELNG 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCcEEEEEEEEEEECC
Confidence 3457899999999999999999995432221 1235677776666677788
Q ss_pred eEEEEEeCCCcccchh--------hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 344 YHVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~--------~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
..+.||||||+.++.. ....++..+|++|+|+|++.+.. .... .+..+...+.| +|+|+||+
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s--------~~~~-~l~~~~~~~~p-iIlV~NK~ 320 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT--------KDDF-LIIDLNKSKKP-FILVLNKI 320 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC--------hhHH-HHHHHhhCCCC-EEEEEECc
Confidence 8999999999765432 23456788999999999986521 1111 33334444666 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+... .. ..+.+.++ .+++++||++ .||.+
T Consensus 321 Dl~~~---~~-------~~~~~~~~-----~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 321 DLKIN---SL-------EFFVSSKV-----LNSSNLSAKQ-LKIKA 350 (442)
T ss_pred cCCCc---ch-------hhhhhhcC-----CceEEEEEec-CCHHH
Confidence 99642 11 11122223 3679999998 57765
No 228
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.59 E-value=1.6e-14 Score=142.30 Aligned_cols=148 Identities=18% Similarity=0.105 Sum_probs=88.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+++|+...... . ...+..+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~-~---------------------------~~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-H---------------------------AYDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc-c---------------------------CcCCCccccceEEEEEECCEEEEE
Confidence 479999999999999999997321110 0 000111111111222333455779
Q ss_pred EEEeCCCcccchhhHhhhcc-cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEecccccccc
Q 009378 347 VVLDSPGHKDFVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~-~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl~~~~ 421 (536)
.||||||+..+... ..+. .+|++|||+|++... . + ......+..+.. .++| +|||+||+|+....
T Consensus 53 ~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~---S---~-~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~ 122 (221)
T cd04148 53 VVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRS---S---F-ERASELRIQLRRNRQLEDRP-IILVGNKSDLARSR 122 (221)
T ss_pred EEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHH---H---H-HHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc
Confidence 99999998843322 2345 899999999998642 1 1 122233333333 2455 99999999987432
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....+ +...+....++ +++++||++|.||.+
T Consensus 123 ~v~~~----~~~~~a~~~~~-----~~~e~SA~~~~gv~~ 153 (221)
T cd04148 123 EVSVQ----EGRACAVVFDC-----KFIETSAGLQHNVDE 153 (221)
T ss_pred eecHH----HHHHHHHHcCC-----eEEEecCCCCCCHHH
Confidence 21111 12233333333 689999999999986
No 229
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.59 E-value=3.3e-14 Score=130.19 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=93.4
Q ss_pred EEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEE
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~L 348 (536)
|+|+|.+|+|||||++.|++..... ......+.|........ . ..+.|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~--~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA-----------------------------RTSKTPGKTQLINFFNV--N-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee-----------------------------eecCCCCcceeEEEEEc--c-CeEEE
Confidence 8999999999999999998421111 00111233333332222 2 28999
Q ss_pred EeCCCcccc----------hhhH---hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 349 LDSPGHKDF----------VPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 349 IDTPGh~df----------~~~~---~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
|||||+... ...+ ......++++++|+|.... ......+.+..+...+.| +++|+||+
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~~~~-vi~v~nK~ 120 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG--------PTEIDLEMLDWLEELGIP-FLVVLTKA 120 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHcCCC-EEEEEEch
Confidence 999996442 2222 2223346889999998764 234445566777777777 99999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+.. ..........+...++... ...+++++||+++.|+.+
T Consensus 121 D~~~--~~~~~~~~~~~~~~l~~~~---~~~~~~~~Sa~~~~~~~~ 161 (170)
T cd01876 121 DKLK--KSELAKALKEIKKELKLFE---IDPPIILFSSLKGQGIDE 161 (170)
T ss_pred hcCC--hHHHHHHHHHHHHHHHhcc---CCCceEEEecCCCCCHHH
Confidence 9973 3333444445555544211 234789999999999975
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.1e-14 Score=160.05 Aligned_cols=145 Identities=20% Similarity=0.266 Sum_probs=107.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+++|+||+|||||+|+|++....+.+. +|+|++.....+...+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNw-------------------------------pGvTVEkkeg~~~~~~~ 50 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNW-------------------------------PGVTVEKKEGKLKYKGH 50 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCC-------------------------------CCeeEEEEEEEEEecCc
Confidence 45679999999999999999999866555332 89999999999999999
Q ss_pred EEEEEeCCCcccchhh------Hhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 345 HVVVLDSPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~------~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.+.|+|+||.-.+... ...++ ..+|++|-|+||++ + +.......++.++++| +|+++|++|
T Consensus 51 ~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn---------L-eRnLyltlQLlE~g~p-~ilaLNm~D 119 (653)
T COG0370 51 EIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN---------L-ERNLYLTLQLLELGIP-MILALNMID 119 (653)
T ss_pred eEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch---------H-HHHHHHHHHHHHcCCC-eEEEeccHh
Confidence 9999999994332211 12222 34899999999985 2 3445555667789999 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+...-+ -+..++-+.+|. |+++++|++|+|+++
T Consensus 120 ~A~~~Gi~-----ID~~~L~~~LGv-----PVv~tvA~~g~G~~~ 154 (653)
T COG0370 120 EAKKRGIR-----IDIEKLSKLLGV-----PVVPTVAKRGEGLEE 154 (653)
T ss_pred hHHhcCCc-----ccHHHHHHHhCC-----CEEEEEeecCCCHHH
Confidence 87432212 222333334454 899999999999886
No 231
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.3e-14 Score=152.78 Aligned_cols=133 Identities=26% Similarity=0.329 Sum_probs=106.4
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe---
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--- 339 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~--- 339 (536)
....++|+++||-.+|||+|+..|..+...-..+. .+ +-..++|.+..|+++|+++......+
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~-----------~e---~~lrytD~l~~E~eRg~sIK~~p~Tl~l~ 190 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKN-----------TE---ADLRYTDTLFYEQERGCSIKSTPVTLVLS 190 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceecccccccc-----------cc---ccccccccchhhHhcCceEeecceEEEEe
Confidence 45679999999999999999999986654211100 00 01234678888999999987544432
Q ss_pred --ecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009378 340 --DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 340 --~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
..+.+.++|+|||||.+|..++...++.+|++|||||+.+| ++-++..++..+-+..+| ++||+||+|+
T Consensus 191 D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EG--------VmlntEr~ikhaiq~~~~-i~vviNKiDR 261 (971)
T KOG0468|consen 191 DSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEG--------VMLNTERIIKHAIQNRLP-IVVVINKVDR 261 (971)
T ss_pred cCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccC--------ceeeHHHHHHHHHhccCc-EEEEEehhHH
Confidence 34568899999999999999999999999999999999988 667888888888888888 9999999997
Q ss_pred c
Q 009378 418 V 418 (536)
Q Consensus 418 ~ 418 (536)
+
T Consensus 262 L 262 (971)
T KOG0468|consen 262 L 262 (971)
T ss_pred H
Confidence 5
No 232
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.58 E-value=4.1e-14 Score=130.55 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=99.6
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
||+|+|..++|||||+++|.+.... . ...+..|.........++.....+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--E---------------------------NYIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--S---------------------------SSETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--c---------------------------ccccccccccccccccccccccccc
Confidence 6999999999999999999843211 0 0111223333333334444567799
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cC-CCcEEEEEecccccccchhHH
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG-VDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~-vp~vIVVINKiDl~~~~~e~~ 425 (536)
|||++|+..|.......++.+|++|+|+|.+... .+ .... ..+..+.. .. .+++|||.||.|+........
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~---S~---~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~ 124 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEE---SF---ENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV 124 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBHH---HH---HTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH
T ss_pred cccccccccccccccccccccccccccccccccc---cc---cccc-cccccccccccccccceeeeccccccccccchh
Confidence 9999999999877777889999999999998642 22 2222 33333333 33 245999999999885322222
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+++..+.+.++ ++++++||+++.||.+
T Consensus 125 ----~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 125 ----EEAQEFAKELG-----VPYFEVSAKNGENVKE 151 (162)
T ss_dssp ----HHHHHHHHHTT-----SEEEEEBTTTTTTHHH
T ss_pred ----hHHHHHHHHhC-----CEEEEEECCCCCCHHH
Confidence 33444555555 3899999999999986
No 233
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.58 E-value=1.7e-14 Score=140.16 Aligned_cols=142 Identities=22% Similarity=0.194 Sum_probs=91.2
Q ss_pred EecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEEEeC
Q 009378 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (536)
Q Consensus 272 vG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~LIDT 351 (536)
+|..++|||||+.+|++... .. ...+.-|++.......+......+.||||
T Consensus 1 vG~~~vGKTsLi~r~~~~~f--~~---------------------------~~~~Tig~~~~~~~~~~~~~~~~l~iwDt 51 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EK---------------------------KYVATLGVEVHPLVFHTNRGPIRFNVWDT 51 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC--CC---------------------------CCCCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 69999999999999983211 00 00111233332222333445678999999
Q ss_pred CCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchhHHHHHH
Q 009378 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (536)
Q Consensus 352 PGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e~~eei~ 429 (536)
||+++|...+..+++.+|++|||+|++.... +.. ....+..+.. .++| +|||+||+|+... ....+.
T Consensus 52 ~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S------~~~-i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~-~v~~~~-- 120 (200)
T smart00176 52 AGQEKFGGLRDGYYIQGQCAIIMFDVTARVT------YKN-VPNWHRDLVRVCENIP-IVLCGNKVDVKDR-KVKAKS-- 120 (200)
T ss_pred CCchhhhhhhHHHhcCCCEEEEEEECCChHH------HHH-HHHHHHHHHHhCCCCC-EEEEEECcccccc-cCCHHH--
Confidence 9999999888889999999999999997521 111 1222222222 2455 9999999998632 111111
Q ss_pred HHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 430 ~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+ .+.+..+ ++|+++||++|+||.+
T Consensus 121 --~-~~~~~~~-----~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 121 --I-TFHRKKN-----LQYYDISAKSNYNFEK 144 (200)
T ss_pred --H-HHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1 2333333 4789999999999987
No 234
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.57 E-value=7.7e-15 Score=134.60 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=92.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+|+|++++|||||+++|.+..... .-|..+. +. =
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~-----------------------------------~KTq~i~-----~~---~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY-----------------------------------KKTQAIE-----YY---D 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc-----------------------------------CccceeE-----ec---c
Confidence 379999999999999999998532211 1111111 11 1
Q ss_pred EEEeCCC----cccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 347 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 347 ~LIDTPG----h~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
.+||||| +..|...++.....||++++|.|++... ...--.++..+..| +|-||||+|+.. +.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~-----------~~~pP~fa~~f~~p-vIGVITK~Dl~~-~~ 105 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR-----------SVFPPGFASMFNKP-VIGVITKIDLPS-DD 105 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC-----------ccCCchhhcccCCC-EEEEEECccCcc-ch
Confidence 4599999 6667777888888999999999999752 11112344455666 999999999983 22
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ +...++|+..|+. .+|++|+++|+||.+
T Consensus 106 ~~i----~~a~~~L~~aG~~----~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 106 ANI----ERAKKWLKNAGVK----EIFEVSAVTGEGIEE 136 (143)
T ss_pred hhH----HHHHHHHHHcCCC----CeEEEECCCCcCHHH
Confidence 332 4556677778884 359999999999986
No 235
>PRK11058 GTPase HflX; Provisional
Probab=99.57 E-value=2.2e-14 Score=154.39 Aligned_cols=143 Identities=18% Similarity=0.167 Sum_probs=87.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC-eE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-YH 345 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~ 345 (536)
++|+|+|.+|+|||||+|+|++....+... .+.|.+.....+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~-------------------------------~~tTld~~~~~i~l~~~~~ 246 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQ-------------------------------LFATLDPTLRRIDVADVGE 246 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccC-------------------------------CCCCcCCceEEEEeCCCCe
Confidence 579999999999999999999643322111 2233333333333333 37
Q ss_pred EEEEeCCCcccc--------hhhHhhhcccCCeEEEEeecCCCcccccccchhhHH---HHHHHHHHHcCCCcEEEEEec
Q 009378 346 VVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT---REHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 346 i~LIDTPGh~df--------~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt---~e~l~ll~~~~vp~vIVVINK 414 (536)
+.||||||+.+. ...+...+..+|++|+|+|++.+.+ ..+. ...+..+...++| +|+|+||
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~-------~e~l~~v~~iL~el~~~~~p-vIiV~NK 318 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV-------QENIEAVNTVLEEIDAHEIP-TLLVMNK 318 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccH-------HHHHHHHHHHHHHhccCCCC-EEEEEEc
Confidence 899999997332 2224456788999999999987531 1222 2223333223455 9999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+....... + .. ...++ . .++++||++|+|+.+
T Consensus 319 iDL~~~~~~~---~----~~--~~~~~--~--~~v~ISAktG~GIde 352 (426)
T PRK11058 319 IDMLDDFEPR---I----DR--DEENK--P--IRVWLSAQTGAGIPL 352 (426)
T ss_pred ccCCCchhHH---H----HH--HhcCC--C--ceEEEeCCCCCCHHH
Confidence 9997421111 1 11 01122 1 248999999999986
No 236
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.57 E-value=3.5e-14 Score=140.22 Aligned_cols=153 Identities=13% Similarity=0.107 Sum_probs=95.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..++|||+|+.+|+..... .. ..+.-+.... ....++.....+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~---------------------------y~pTi~~~~~-~~~~~~~~~v~L 51 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GS---------------------------YVPTVFENYT-ASFEIDKRRIEL 51 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--Cc---------------------------cCCccccceE-EEEEECCEEEEE
Confidence 68999999999999999999842210 00 0000111111 111233345678
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccccccchhH
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl~~~~~e~ 424 (536)
.||||+|++.|...+..+++.+|++|||+|.+... . +......+...++. .++| +|||+||+|+.... ..
T Consensus 52 ~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~---S---f~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~-~~ 123 (222)
T cd04173 52 NMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE---T---LDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDL-AT 123 (222)
T ss_pred EEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhhCCCCC-EEEEEECcccccch-hh
Confidence 99999999999888888899999999999998642 1 22221122222222 2455 99999999986421 11
Q ss_pred HHH---------HHHHHHHHHHHcCCCCCCccEEEEEcccCCC-ccc
Q 009378 425 FDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (536)
Q Consensus 425 ~ee---------i~~~L~~~l~~~g~~~~~i~vipvSA~~Gen-I~e 461 (536)
..+ ..++...+.+..+. ++|+++||++++| |.+
T Consensus 124 ~~~~~~~~~~pIs~e~g~~~ak~~~~----~~y~E~SAk~~~~~V~~ 166 (222)
T cd04173 124 LRELSKQRLIPVTHEQGTVLAKQVGA----VSYVECSSRSSERSVRD 166 (222)
T ss_pred hhhhhhccCCccCHHHHHHHHHHcCC----CEEEEcCCCcCCcCHHH
Confidence 111 11234444445542 4789999999985 886
No 237
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-13 Score=138.05 Aligned_cols=120 Identities=23% Similarity=0.386 Sum_probs=85.1
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009378 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
.+..+.++|+|+|.||+|||||.|.+++....+.++.+++ |.......+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T------------------------------Tr~~ilgi~t 116 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT------------------------------TRHRILGIIT 116 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccc------------------------------eeeeeeEEEe
Confidence 4567889999999999999999999999888777765432 2233334466
Q ss_pred cCCeEEEEEeCCCc------cc------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-CCCc
Q 009378 341 SKNYHVVVLDSPGH------KD------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQ 407 (536)
Q Consensus 341 ~~~~~i~LIDTPGh------~d------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~vp~ 407 (536)
.+..+++|+||||. .. +..+...++..||++++|+|+++.. ....-..+..+... .+|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr--------~~l~p~vl~~l~~ys~ip- 187 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR--------TPLHPRVLHMLEEYSKIP- 187 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc--------CccChHHHHHHHHHhcCC-
Confidence 78899999999991 11 2334456778899999999999531 11222333334443 345
Q ss_pred EEEEEecccccc
Q 009378 408 LIVAVNKMDAVQ 419 (536)
Q Consensus 408 vIVVINKiDl~~ 419 (536)
-|+|.||+|...
T Consensus 188 s~lvmnkid~~k 199 (379)
T KOG1423|consen 188 SILVMNKIDKLK 199 (379)
T ss_pred ceeeccchhcch
Confidence 699999999874
No 238
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=8.3e-14 Score=131.06 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=112.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.+...+|+|.|+.++||||++.++......++..... ..... ..+..|+...+..+...
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~-------------------~~s~k--~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS-------------------SVSGK--GKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeecccc-------------------ccccc--cccceeEeecccceEEc
Confidence 4567899999999999999999998654332211100 00000 02335555555555554
Q ss_pred C-eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC-CCcEEEEEeccccccc
Q 009378 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~-~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~-vp~vIVVINKiDl~~~ 420 (536)
. ..+.|++||||++|..++....+.+.++|++||.+.+. ....++.+.++.... +| ++|++||.|+...
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~--------~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a 136 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPI--------TFHAEEIIDFLTSRNPIP-VVVAINKQDLFDA 136 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCc--------chHHHHHHHHHhhccCCC-EEEEeeccccCCC
Confidence 4 89999999999999999999999999999999999873 225567777887777 55 9999999999864
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... ++++++++... ..+++|+++|..++++.+
T Consensus 137 ~pp------e~i~e~l~~~~---~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 137 LPP------EKIREALKLEL---LSVPVIEIDATEGEGARD 168 (187)
T ss_pred CCH------HHHHHHHHhcc---CCCceeeeecccchhHHH
Confidence 221 22333333221 356889999999999875
No 239
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.1e-14 Score=133.83 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=109.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.++++++|..|+|||.|+.+++..... ......-|+..-.....++.....
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~-----------------------------~~hd~TiGvefg~r~~~id~k~IK 56 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQ-----------------------------PVHDLTIGVEFGARMVTIDGKQIK 56 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcc-----------------------------ccccceeeeeeceeEEEEcCceEE
Confidence 578999999999999999999843211 111123445444445556667788
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEecccccccch
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~~~ 422 (536)
++||||.||+.|...+..+++.+-++|||+|.+... .|+.+ ..++.-+++. ++. ++|+.||+|+.....
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~---sF~hL----~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~rR~ 128 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRE---SFNHL----TSWLEDARQHSNENMV-IMLIGNKSDLEARRE 128 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchh---hHHHH----HHHHHHHHHhcCCCcE-EEEEcchhhhhcccc
Confidence 999999999999999999999999999999998652 23322 2223333333 333 788899999985432
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
. -.++-+.+.++.|+ .|+.+||++++|+++.
T Consensus 129 V----s~EEGeaFA~ehgL-----ifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 129 V----SKEEGEAFAREHGL-----IFMETSAKTAENVEEA 159 (216)
T ss_pred c----cHHHHHHHHHHcCc-----eeehhhhhhhhhHHHH
Confidence 2 24566777888887 6889999999999974
No 240
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.53 E-value=2.1e-13 Score=133.09 Aligned_cols=153 Identities=21% Similarity=0.223 Sum_probs=95.4
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
.....++|+|+|+.|+|||||+++++..... . ......++.+.........
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~ 55 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFE--K---------------------------KYIPTLGVEVHPLKFYTNC 55 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCC--C---------------------------CCCCccceEEEEEEEEECC
Confidence 3456789999999999999999887632110 0 0011122322222222344
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEeccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINKiDl~~~ 420 (536)
....+.+|||||+..|...+...+..++++|+|+|.+.... +.....+...+... -.+| +++|+||+|+...
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT------YKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDR 128 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH------HHHHHHHHHHHHHhCCCCC-EEEEEECccCccc
Confidence 56789999999999987777777889999999999986521 11111111112112 2344 8999999998632
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.... ....+.+..+ +.++++||++|.|+.+
T Consensus 129 -~~~~-----~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 129 -QVKA-----RQITFHRKKN-----LQYYDISAKSNYNFEK 158 (215)
T ss_pred -cCCH-----HHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1111 1112333333 3789999999999975
No 241
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.53 E-value=5.1e-14 Score=131.36 Aligned_cols=145 Identities=21% Similarity=0.197 Sum_probs=84.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+|||||+.+++..... . .. .+..+. . .....+......+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~--~-------------------------~~--~~~~~~-~-~~~i~~~~~~~~l 49 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--Q-------------------------LE--SPEGGR-F-KKEVLVDGQSHLL 49 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCC--C-------------------------CC--CCCccc-e-EEEEEECCEEEEE
Confidence 47999999999999999998732110 0 00 000111 0 1111222234668
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc----CCCcEEEEEecccccccch
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----~vp~vIVVINKiDl~~~~~ 422 (536)
.||||+|.+.. ..++.+|++|||+|.+... . +... ..++..+... .+| ++||.||+|+.....
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~---s---f~~~-~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~ 116 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEA---S---FQTV-YNLYHQLSSYRNISEIP-LILVGTQDAISESNP 116 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHH---H---HHHH-HHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCC
Confidence 99999998752 2456799999999998642 1 2221 2222223222 344 999999999853111
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+. .++...+.+..+ .+.|+++||++|+||.+
T Consensus 117 ~~v~--~~~~~~~~~~~~----~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 117 RVID--DARARQLCADMK----RCSYYETCATYGLNVER 149 (158)
T ss_pred cccC--HHHHHHHHHHhC----CCcEEEEecCCCCCHHH
Confidence 1111 112233333321 24789999999999986
No 242
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.53 E-value=4.3e-14 Score=157.92 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=94.9
Q ss_pred ecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEEEeCC
Q 009378 273 GHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSP 352 (536)
Q Consensus 273 G~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~LIDTP 352 (536)
|.+|+|||||+|+|++.... ....+|+|++.....+..++..+.|||||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-------------------------------v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-------------------------------VGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-------------------------------ecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 88999999999999854221 11236788877777777788889999999
Q ss_pred Ccccchhh------Hhh--hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhH
Q 009378 353 GHKDFVPN------MIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (536)
Q Consensus 353 Gh~df~~~------~~~--~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~ 424 (536)
|+.++... ... ....+|++++|+|++.. .. ..+....+...++| +|+|+||+|+.+.....
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er-~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i~ 118 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ER-NLYLTLQLLELGIP-MILALNLVDEAEKKGIR 118 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hh-hHHHHHHHHhcCCC-EEEEEehhHHHHhCCCh
Confidence 98876432 111 23469999999999853 11 22333344556777 99999999987422211
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009378 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
.+.+.+.+.++ ++++++||++|+|++++
T Consensus 119 -----~d~~~L~~~lg-----~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 119 -----IDEEKLEERLG-----VPVVPTSATEGRGIERL 146 (591)
T ss_pred -----hhHHHHHHHcC-----CCEEEEECCCCCCHHHH
Confidence 12233333444 37899999999999873
No 243
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.53 E-value=3.2e-13 Score=133.60 Aligned_cols=177 Identities=20% Similarity=0.231 Sum_probs=116.7
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
....+..|+|+|++|+|||||++.|++.... .......|. +.+ ...
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~-----------------------------~~~~~~~g~-i~i----~~~ 80 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTK-----------------------------QNISDIKGP-ITV----VTG 80 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhccc-----------------------------Ccccccccc-EEE----Eec
Confidence 3456788999999999999999999843210 000111221 111 223
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
.+..++|+||||+. ..++..+..+|++|||+|+..+ +..+...++..+...++|.+|+|+||+|++..
T Consensus 81 ~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~--------~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~- 148 (225)
T cd01882 81 KKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFG--------FEMETFEFLNILQVHGFPRVMGVLTHLDLFKK- 148 (225)
T ss_pred CCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcC--------CCHHHHHHHHHHHHcCCCeEEEEEeccccCCc-
Confidence 57789999999964 5566677889999999999876 44567778888888888866679999999852
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHHhcCCC--CCCCCCCee
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP--PREFSKPLL 496 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~~l~~~--~~~~~~P~~ 496 (536)
...++++.+.++..+...-+ ...+++++||++.-.+. |-.+..|+..|..+.+. .+....|..
T Consensus 149 ~~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~~----------~~e~~~~~r~i~~~~~~~~~~r~~r~y~ 213 (225)
T cd01882 149 NKTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRYP----------KTEIHNLARFISVMKFRPLNWRNSHPYV 213 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCCC----------HHHHHHHHHHHHhCCCCCCeeecCCCeE
Confidence 34455666666664332112 13478999999875442 23345677777655433 334455554
No 244
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5e-14 Score=127.83 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=106.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
-++|++||..|+|||-|+.+++.....+. ....-|+..-+..+.+..+...
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppg-----------------------------qgatigvdfmiktvev~gekik 57 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPG-----------------------------QGATIGVDFMIKTVEVNGEKIK 57 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCC-----------------------------CCceeeeeEEEEEEEECCeEEE
Confidence 47899999999999999999984222111 1112344445555666677889
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHH
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ 425 (536)
+.||||+|+++|...+.++++.++++|||+|.+.- ..|+.+-.+.+++-..+...-+ -|+|.||+|+.+. .+.-
T Consensus 58 lqiwdtagqerfrsitqsyyrsahalilvydiscq---psfdclpewlreie~yan~kvl--kilvgnk~d~~dr-revp 131 (213)
T KOG0095|consen 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ---PSFDCLPEWLREIEQYANNKVL--KILVGNKIDLADR-REVP 131 (213)
T ss_pred EEEeeccchHHHHHHHHHHhhhcceEEEEEecccC---cchhhhHHHHHHHHHHhhcceE--EEeeccccchhhh-hhhh
Confidence 99999999999999999999999999999999853 3444455556665544443322 3899999998742 1222
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+++-+++... . ..-|+++||+..+|++.
T Consensus 132 ~qigeefs~~----q----dmyfletsakea~nve~ 159 (213)
T KOG0095|consen 132 QQIGEEFSEA----Q----DMYFLETSAKEADNVEK 159 (213)
T ss_pred HHHHHHHHHh----h----hhhhhhhcccchhhHHH
Confidence 2233322222 1 12468999999999986
No 245
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.53 E-value=9.2e-14 Score=132.70 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=90.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+|+|..|+|||||+++|+..... .. ..+..+... .....+......+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~---------------------------~~~t~~~~~-~~~~~~~~~~~~l 51 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EE---------------------------YHPTVFENY-VTDCRVDGKPVQL 51 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cc---------------------------cCCcccceE-EEEEEECCEEEEE
Confidence 47999999999999999999732110 00 000000000 0111122233568
Q ss_pred EEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccch--
Q 009378 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK-- 422 (536)
Q Consensus 347 ~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~-- 422 (536)
.+|||||+..|.......++.+|++|+|+|.+... . +......++..++.. .+| +|||+||+|+.....
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~---s---~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~ 124 (187)
T cd04129 52 ALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD---S---LENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAK 124 (187)
T ss_pred EEEECCCChhccccchhhcCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccc
Confidence 89999998887655555678899999999987542 1 211111223333322 445 999999999864211
Q ss_pred -----hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 -----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 -----e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.++.. ......+.+.++. .++|++||++|.|+.+
T Consensus 125 ~~~~~~~~~~-~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 163 (187)
T cd04129 125 EEYRTQRFVP-IQQGKRVAKEIGA----KKYMECSALTGEGVDD 163 (187)
T ss_pred cccccCCcCC-HHHHHHHHHHhCC----cEEEEccCCCCCCHHH
Confidence 01110 1223344444543 3689999999999986
No 246
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=1.2e-13 Score=151.54 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=77.5
Q ss_pred CeEEEEEeCCCccc-----chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC-CcEEEEEeccc
Q 009378 343 NYHVVVLDSPGHKD-----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNKMD 416 (536)
Q Consensus 343 ~~~i~LIDTPGh~d-----f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v-p~vIVVINKiD 416 (536)
..+++|+||||... +...+...+..+|++|||||+..+ +.....+++..++..+. .|+|+|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~--------~s~~DeeIlk~Lkk~~K~~PVILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL--------KSISDEEVREAILAVGQSVPLYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC--------CChhHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 46899999999432 344567788999999999999865 23455667777777774 23999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+.+......+.+...+...+....+ ....+|||||++|.|+..
T Consensus 301 l~dreeddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~nid~ 343 (741)
T PRK09866 301 QQDRNSDDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLANR 343 (741)
T ss_pred CCCcccchHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCHHH
Confidence 8743233345555555555544444 233679999999999985
No 247
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.52 E-value=1.4e-13 Score=121.77 Aligned_cols=147 Identities=18% Similarity=0.119 Sum_probs=89.5
Q ss_pred EEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEEEe
Q 009378 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (536)
Q Consensus 271 IvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~LID 350 (536)
|+|++|+|||||+++|++........ ....+...............+.+||
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~~~l~D 51 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY-----------------------------ETTIIDFYSKTIEVDGKKVKLQIWD 51 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc-----------------------------ccchhheeeEEEEECCEEEEEEEEe
Confidence 58999999999999998543210000 0000111111111222367899999
Q ss_pred CCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHH---HHHHHHHcCCCcEEEEEecccccccchhHHHH
Q 009378 351 SPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE---HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (536)
Q Consensus 351 TPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e---~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ee 427 (536)
+||+..+.......+..+|++|+|+|+..+.. ....... ........++| +|||+||+|+..........
T Consensus 52 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~~~~ 124 (157)
T cd00882 52 TAGQERFRSLRRLYYRGADGIILVYDVTDRES------FENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE 124 (157)
T ss_pred cCChHHHHhHHHHHhcCCCEEEEEEECcCHHH------HHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchHHHH
Confidence 99998888877788899999999999997521 1111111 22223334555 99999999997532222111
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
........ ..++++++|++++.|+.+
T Consensus 125 ---~~~~~~~~-----~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 125 ---LAEQLAKE-----LGVPYFETSAKTGENVEE 150 (157)
T ss_pred ---HHHHHHhh-----cCCcEEEEecCCCCChHH
Confidence 01111111 235789999999999975
No 248
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.52 E-value=5.1e-14 Score=129.30 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=106.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|.|+|..|+|||+|+-+++...... .....-|+.+.+....++...
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~-----------------------------~~~~tIGvDFkvk~m~vdg~~ 59 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD-----------------------------LHPTTIGVDFKVKVMQVDGKR 59 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc-----------------------------cCCceeeeeEEEEEEEEcCce
Confidence 456899999999999999999998422110 011124555555666667778
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
..+.||||+|+++|...+..+++.|.++|+|+|++... .|-++.-+.+|+-.......+- .++|.||+|.......
T Consensus 60 ~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rd---tf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R~V 135 (209)
T KOG0080|consen 60 LKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRD---TFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKESERVV 135 (209)
T ss_pred EEEEEEeccchHhhhccCHhHhccCceeEEEEEccchh---hHHhHHHHHHHHHhhcCCccHh-Hhhhcccccchhcccc
Confidence 89999999999999999999999999999999999653 2222222222222222222232 3789999997632222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. +++-..+.+.+++ -|+++||++.+|+..
T Consensus 136 ~----reEG~kfAr~h~~-----LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 136 D----REEGLKFARKHRC-----LFIECSAKTRENVQC 164 (209)
T ss_pred c----HHHHHHHHHhhCc-----EEEEcchhhhccHHH
Confidence 1 2344455666554 689999999999975
No 249
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.51 E-value=1.9e-13 Score=132.13 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=93.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-cCCe
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNY 344 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~ 344 (536)
+++|+|+|.+|+|||||+|+|++......... . ... ..+|.... .+. ....
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~------------------~--~~~------~~~t~~~~--~~~~~~~~ 52 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAA------------------P--TGV------VETTMKRT--PYPHPKFP 52 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCcc------------------c--cCc------cccccCce--eeecCCCC
Confidence 47899999999999999999986321100000 0 000 00111111 111 1234
Q ss_pred EEEEEeCCCcccchh-----hHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 009378 345 HVVVLDSPGHKDFVP-----NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 345 ~i~LIDTPGh~df~~-----~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~ 419 (536)
.+.+|||||..+... .....+..+|++|+|.+.. +......++..+...+.| +++|+||+|+..
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----------FSSNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----------CCHHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 689999999643211 1122356789999986543 334556666777777776 999999999864
Q ss_pred cch-----------hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcc--cCCCcc
Q 009378 420 YSK-----------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL--ENQNLV 460 (536)
Q Consensus 420 ~~~-----------e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~--~GenI~ 460 (536)
..+ ..++++++.+...++..+... .+|+.+|+. .+.|+.
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~--p~v~~vS~~~~~~~~~~ 173 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSE--PPVFLVSNFDPSDYDFP 173 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCCCC--CCEEEEeCCChhhcChH
Confidence 222 235566667777776655533 367999999 455554
No 250
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.51 E-value=1.5e-13 Score=126.80 Aligned_cols=153 Identities=23% Similarity=0.250 Sum_probs=105.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++|.|+|.-||||||++++|.+.. .....+..|..+ ..+..++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~------------------------------~~~i~pt~gf~I----ktl~~~~ 59 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED------------------------------TDTISPTLGFQI----KTLEYKG 59 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC------------------------------ccccCCccceee----EEEEecc
Confidence 448999999999999999999998532 111222233322 3355688
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e 423 (536)
+.+++||..|+..+..-+..++..+|++|||||..... .|+.......+.+.--+..|.| ++|+.||.|+... -
T Consensus 60 ~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~---r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~--l 133 (185)
T KOG0073|consen 60 YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM---RMQECKQELTELLVEERLAGAP-LLVLANKQDLPGA--L 133 (185)
T ss_pred eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH---HHHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc--c
Confidence 99999999999999999999999999999999997542 1222222223333322334656 9999999999742 2
Q ss_pred HHHHHH--HHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIK--VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~--~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+.+. -.+..++++.. ++++-|||.+|+++.+
T Consensus 134 ~~~~i~~~~~L~~l~ks~~-----~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 134 SLEEISKALDLEELAKSHH-----WRLVKCSAVTGEDLLE 168 (185)
T ss_pred CHHHHHHhhCHHHhccccC-----ceEEEEeccccccHHH
Confidence 222232 34555555444 4889999999999875
No 251
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.50 E-value=2.1e-13 Score=131.92 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=68.0
Q ss_pred ecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEecccc
Q 009378 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDA 417 (536)
Q Consensus 340 ~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiDl 417 (536)
+.....+.||||+|++... ...+++.+|++|||+|.+... .++.+ ...++..++. -++| +|||+||+|+
T Consensus 62 ~~~~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~---Sf~~~---~~~w~~~i~~~~~~~p-iilvgNK~DL 132 (195)
T cd01873 62 DGVSVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPN---SLRNV---KTMWYPEIRHFCPRVP-VILVGCKLDL 132 (195)
T ss_pred CCEEEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChh---HHHHH---HHHHHHHHHHhCCCCC-EEEEEEchhc
Confidence 3345789999999987642 334678999999999998642 11111 1112222322 2445 9999999998
Q ss_pred cccchh---------------HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 418 VQYSKD---------------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e---------------~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...... ...-..++...+.+.+++ +|+++||++|+||.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~-----~~~E~SAkt~~~V~e 186 (195)
T cd01873 133 RYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGI-----PYYETSVVTQFGVKD 186 (195)
T ss_pred cccccchhhhcccccccccccCCccCHHHHHHHHHHhCC-----EEEEcCCCCCCCHHH
Confidence 631100 001112345556666664 789999999999986
No 252
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=1.6e-13 Score=120.83 Aligned_cols=107 Identities=25% Similarity=0.306 Sum_probs=73.3
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|.+|+|||||+|+|++....... ...+.|.......+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~------------------------------~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS------------------------------NIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES------------------------------SSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc------------------------------ccccceeeeeeeeeeeceeeEE
Confidence 5999999999999999999964221111 1133333333344556888899
Q ss_pred EEeCCCccc---------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009378 348 VLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 348 LIDTPGh~d---------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
|+||||..+ ........+..+|++|||+|+... .......++..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~--------~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP--------ITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH--------SHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999533 233455666889999999998753 2345556666665 4454 9999998
No 253
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.49 E-value=2.9e-13 Score=134.66 Aligned_cols=82 Identities=27% Similarity=0.325 Sum_probs=56.8
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
+|+|+|.+|+|||||+++|++....+.. ..+.|.+.....+...+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~-------------------------------~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA-------------------------------YEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC-------------------------------CCCccccceEEEEEECCeEEE
Confidence 6899999999999999999954321110 012222222223445778899
Q ss_pred EEeCCCccc-------chhhHhhhcccCCeEEEEeecCCC
Q 009378 348 VLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (536)
Q Consensus 348 LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g 380 (536)
+|||||+.+ +.......++.+|++|+|+|++..
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999643 233456778899999999998754
No 254
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.47 E-value=1.2e-12 Score=127.42 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=97.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-----c
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-----S 341 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-----~ 341 (536)
++|+++|..++|||||+++|++..... ...+.-|.++......+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~-----------------------------~~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG-----------------------------RPSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCcceeeeEEEEEEEEcCCCCCC
Confidence 479999999999999999998432110 011112332322222222 1
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH------------------Hc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR------------------SF 403 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~------------------~~ 403 (536)
....+.||||+|++.|...+...++.+|++|||+|.+... .++.+..+..+...... ..
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~---Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRK---SSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGN 128 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChH---HHHHHHHHHHHHHHhhccccccccccccccccccCCC
Confidence 3467899999999999888888899999999999998753 22222222222221110 01
Q ss_pred CCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 404 GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 404 ~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+| +|||.||+|+........+........+.+.++. +.|.+++.....+..
T Consensus 129 ~~P-iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~-----~~i~~~c~~~~~~~~ 180 (202)
T cd04102 129 QIP-LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA-----EEINLNCTNGRLLAA 180 (202)
T ss_pred Cce-EEEEEECccchhhcccchHHHhhHhhhHHHhcCC-----ceEEEecCCcccccC
Confidence 355 9999999999743222222233334444555665 568888888776654
No 255
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.45 E-value=2.9e-13 Score=136.80 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=94.8
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.+....|++||-||||||||+++|...+..|.... +++..+.-|+ ..++ +
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als~AKpkVa~Ya-----------------------FTTL~P~iG~------v~yd-d 242 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYA-----------------------FTTLRPHIGT------VNYD-D 242 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhhccCCcccccc-----------------------eeeeccccce------eecc-c
Confidence 35567899999999999999999997665553322 2222333332 1121 2
Q ss_pred CeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 343 NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 343 ~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
-.++++-|.||... .-...++.+..+++++||||.+.+......+.+.....|+-.+-+.+..++.+||+||+
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 23399999999332 33445667788999999999997622111111211222222222223344589999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+....... |..+.+.+. +..+||+||++|+|+.+
T Consensus 323 D~~eae~~~-------l~~L~~~lq----~~~V~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 323 DLPEAEKNL-------LSSLAKRLQ----NPHVVPVSAKSGEGLEE 357 (366)
T ss_pred CchhHHHHH-------HHHHHHHcC----CCcEEEeeeccccchHH
Confidence 986321111 223333222 12479999999999975
No 256
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.2e-13 Score=130.58 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=105.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
..-++|+++|.+++|||-|+.|++.....+.++ ..-|+.+......++.+.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sk-----------------------------sTIGvef~t~t~~vd~k~ 62 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESK-----------------------------STIGVEFATRTVNVDGKT 62 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccc-----------------------------cceeEEEEeeceeecCcE
Confidence 445789999999999999999998433222111 124454444444556667
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
...+||||+|+++|...+..+++.+-++|||+|.+... .|+ .....+..|+.. +++ +++|.||+||...
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~---Tfe----nv~rWL~ELRdhad~niv-imLvGNK~DL~~l 134 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQ---TFE----NVERWLKELRDHADSNIV-IMLVGNKSDLNHL 134 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHH---HHH----HHHHHHHHHHhcCCCCeE-EEEeecchhhhhc
Confidence 78899999999999999999999999999999998642 122 222222333332 455 8999999999752
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
.... .++.+.+.+..++ .|+++||+.+.|+.+.
T Consensus 135 raV~----te~~k~~Ae~~~l-----~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 135 RAVP----TEDGKAFAEKEGL-----FFLETSALDATNVEKA 167 (222)
T ss_pred cccc----hhhhHhHHHhcCc-----eEEEecccccccHHHH
Confidence 2211 2334444444444 7899999999999863
No 257
>COG2262 HflX GTPases [General function prediction only]
Probab=99.44 E-value=5.9e-13 Score=139.11 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=100.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
....+.|+++|-+|||||||+|+|++.........+. |.+.....+...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFA-------------------------------TLdpttR~~~l~ 237 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFA-------------------------------TLDPTTRRIELG 237 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccc-------------------------------cccCceeEEEeC
Confidence 3456789999999999999999999654443332211 222222333333
Q ss_pred -CeEEEEEeCCCcccch--------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC--CcEEEE
Q 009378 343 -NYHVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVA 411 (536)
Q Consensus 343 -~~~i~LIDTPGh~df~--------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v--p~vIVV 411 (536)
+..+.|-||-|+.+-. ..++.....+|++|+|||++++. +..+......++.+++. +|+|+|
T Consensus 238 ~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~-------~~~~~~~v~~vL~el~~~~~p~i~v 310 (411)
T COG2262 238 DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPE-------ILEKLEAVEDVLAEIGADEIPIILV 310 (411)
T ss_pred CCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChh-------HHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 6889999999965532 33455567799999999999863 55677777788888644 359999
Q ss_pred EecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 412 INKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+||+|++... . +...+... . + ..|++||++|+|++.
T Consensus 311 ~NKiD~~~~~-~----~~~~~~~~-----~--~--~~v~iSA~~~~gl~~ 346 (411)
T COG2262 311 LNKIDLLEDE-E----ILAELERG-----S--P--NPVFISAKTGEGLDL 346 (411)
T ss_pred EecccccCch-h----hhhhhhhc-----C--C--CeEEEEeccCcCHHH
Confidence 9999988531 1 11111111 1 1 469999999999975
No 258
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.44 E-value=9.5e-13 Score=128.06 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=74.1
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee--cCCeE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNYH 345 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~~~ 345 (536)
+|+|+|++|+|||||+++|+......+. ..++.......+. ..+..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~--------------------------------~s~~~~~~~~~~~~~~~~~~ 49 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTV--------------------------------TSIEPNVATFILNSEGKGKK 49 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc--------------------------------CcEeecceEEEeecCCCCce
Confidence 6999999999999999999843211000 0011111111121 24577
Q ss_pred EEEEeCCCcccchhhHhhhcccC-CeEEEEeecCCCcccccccchhhHHHHHHHHHH---H--cCCCcEEEEEecccccc
Q 009378 346 VVVLDSPGHKDFVPNMISGATQS-DAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---S--FGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~a-D~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~---~--~~vp~vIVVINKiDl~~ 419 (536)
+.|||||||.++...+...++.+ +++|||||+.... ..+.........++. . .++| ++||+||+|+..
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~-----~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~ 123 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ-----KNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFT 123 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch-----hHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhcc
Confidence 99999999999988888888888 9999999998641 011111112222221 1 2555 999999999875
Q ss_pred c
Q 009378 420 Y 420 (536)
Q Consensus 420 ~ 420 (536)
.
T Consensus 124 a 124 (203)
T cd04105 124 A 124 (203)
T ss_pred c
Confidence 3
No 259
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=5.1e-13 Score=121.11 Aligned_cols=153 Identities=19% Similarity=0.165 Sum_probs=106.8
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
..++.|+|...+|||+|+-+.+.....+ .--+.-|+...+...+-......
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~-----------------------------afvsTvGidFKvKTvyr~~kRik 71 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS-----------------------------AFVSTVGIDFKVKTVYRSDKRIK 71 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccc-----------------------------ceeeeeeeeEEEeEeeecccEEE
Confidence 3589999999999999999988533221 11123455555555555556788
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHH
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ 425 (536)
+.||||.|+++|...+-.++++++++||++|.+... .|..++.+. -.+......+.+ +|+|.||+|+-......
T Consensus 72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNee---Sf~svqdw~-tqIktysw~naq-vilvgnKCDmd~eRvis- 145 (193)
T KOG0093|consen 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNSVQDWI-TQIKTYSWDNAQ-VILVGNKCDMDSERVIS- 145 (193)
T ss_pred EEEEecccchhhhHHHHHHhhccceEEEEEecCCHH---HHHHHHHHH-HHheeeeccCce-EEEEecccCCccceeee-
Confidence 999999999999998989999999999999998642 222221111 111112234566 99999999997432222
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+..+.+...+|| .||+.||+.+.|+..
T Consensus 146 ---~e~g~~l~~~LGf-----efFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 146 ---HERGRQLADQLGF-----EFFETSAKENINVKQ 173 (193)
T ss_pred ---HHHHHHHHHHhCh-----HHhhhcccccccHHH
Confidence 2445566677787 789999999999975
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.42 E-value=1.4e-12 Score=125.85 Aligned_cols=162 Identities=21% Similarity=0.269 Sum_probs=101.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|.+|+|||||+|+|++........ ...++|...........+..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL-----------------------------SASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc-----------------------------CCCCcccccceeeEEECCeEE
Confidence 479999999999999999999654322110 123455554445555688899
Q ss_pred EEEeCCCcccch-------hhH----hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-C---CCcEEEE
Q 009378 347 VVLDSPGHKDFV-------PNM----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-G---VDQLIVA 411 (536)
Q Consensus 347 ~LIDTPGh~df~-------~~~----~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~---vp~vIVV 411 (536)
+||||||..+.. ..+ ......+|++|||+++.. +.......+..++.. + .+++|||
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~---------~t~~d~~~l~~l~~~fg~~~~~~~ivv 122 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR---------FTEEEEQAVETLQELFGEKVLDHTIVL 122 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC---------cCHHHHHHHHHHHHHhChHhHhcEEEE
Confidence 999999954431 111 123456899999999875 223445555555443 3 2458999
Q ss_pred Eecccccccc--hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcc-----cCCCcccCCCCcccccccchhhHHHHHHhc
Q 009378 412 VNKMDAVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL-----ENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 484 (536)
Q Consensus 412 INKiDl~~~~--~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~-----~GenI~e~~~~~~~~~Wy~g~tLle~L~~l 484 (536)
+|+.|.+... .+.+......++.+++.++- .++..+.+ .+.++. .||+.|+.+
T Consensus 123 ~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-----r~~~f~~~~~~~~~~~q~~---------------~Ll~~i~~~ 182 (196)
T cd01852 123 FTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-----RYVAFNNKAKGEEQEQQVK---------------ELLAKVESM 182 (196)
T ss_pred EECccccCCCcHHHHHHhccHHHHHHHHHhCC-----eEEEEeCCCCcchhHHHHH---------------HHHHHHHHH
Confidence 9999987432 11122233567777777664 33455443 344444 488888765
Q ss_pred CC
Q 009378 485 RP 486 (536)
Q Consensus 485 ~~ 486 (536)
.+
T Consensus 183 ~~ 184 (196)
T cd01852 183 VK 184 (196)
T ss_pred HH
Confidence 43
No 261
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.41 E-value=2.9e-13 Score=134.26 Aligned_cols=196 Identities=17% Similarity=0.233 Sum_probs=124.4
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhccccccc-------c-hhhhhHHHHhhhCCCccchhccccccccccccceEEE
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQ-------K-QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT 333 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~-------~-~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~ 333 (536)
...+++.|+|+|..|+|||||+.||......-.. + .+....-.+..+-+.+..|.-+|.+....++.||...
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 3456788999999999999999999755422111 1 1122223445555667777788888888888888765
Q ss_pred EEEEEee-----------cCCeEEEEEeCCCccc-chhhHhhh-------cccCCeEEEEeecCCCcccccccchhhHHH
Q 009378 334 VAVAYFD-----------SKNYHVVVLDSPGHKD-FVPNMISG-------ATQSDAAILVIDASVGSFEVGMNTAKGLTR 394 (536)
Q Consensus 334 ~~~~~~~-----------~~~~~i~LIDTPGh~d-f~~~~~~~-------l~~aD~~ILVVDas~g~~e~~~~~~~~qt~ 394 (536)
...+... .....+.||||||+.. |....... ....-++++|||........ .++....
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~---tFMSNMl 171 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPT---TFMSNML 171 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCch---hHHHHHH
Confidence 4332211 1346799999999654 43332221 23467899999987653222 2567778
Q ss_pred HHHHHHHHcCCCcEEEEEecccccccc--hh---HHHHHHHHHHH--------HHHHcCCC----CCCccEEEEEcccCC
Q 009378 395 EHAQLIRSFGVDQLIVAVNKMDAVQYS--KD---RFDSIKVQLGT--------FLRSCGFK----DASLTWIPLSALENQ 457 (536)
Q Consensus 395 e~l~ll~~~~vp~vIVVINKiDl~~~~--~e---~~eei~~~L~~--------~l~~~g~~----~~~i~vipvSA~~Ge 457 (536)
....++....+| +|||.||.|+.+.. .+ .|+.+++.+.. +.....+. -..+..+.||+.+|.
T Consensus 172 YAcSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 172 YACSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 888899999998 99999999998531 11 12222222221 10000000 024577999999999
Q ss_pred Cccc
Q 009378 458 NLVT 461 (536)
Q Consensus 458 nI~e 461 (536)
|..+
T Consensus 251 G~dd 254 (366)
T KOG1532|consen 251 GFDD 254 (366)
T ss_pred cHHH
Confidence 9986
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.9e-13 Score=141.73 Aligned_cols=154 Identities=21% Similarity=0.233 Sum_probs=104.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+..++|+|+|+||+|||||+|+|.+....|.. +.+|+|.+.....++..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS------------------------------pv~GTTRDaiea~v~~~G 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVS------------------------------PVPGTTRDAIEAQVTVNG 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC------------------------------CCCCcchhhheeEeecCC
Confidence 45699999999999999999999976555443 458999998888999999
Q ss_pred eEEEEEeCCCccc---------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC----------
Q 009378 344 YHVVVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---------- 404 (536)
Q Consensus 344 ~~i~LIDTPGh~d---------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~---------- 404 (536)
+.+.|+||+|..+ -+......+..+|++++|||+....++. ...+..++...+
T Consensus 316 ~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s--------d~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 316 VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES--------DLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc--------chHHHHHHHHhccceEEEeccc
Confidence 9999999999554 1233345677899999999997764432 222233333322
Q ss_pred -CCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccE-EEEEcccCCCccc
Q 009378 405 -VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTW-IPLSALENQNLVT 461 (536)
Q Consensus 405 -vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~v-ipvSA~~GenI~e 461 (536)
..++|++.||+|+...-.. +......++...+ ....++ ..+|+++++|+..
T Consensus 388 ~~~~~i~~~nk~D~~s~~~~----~~~~~~~~~~~~~--~~~~~i~~~vs~~tkeg~~~ 440 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSKIPE----MTKIPVVYPSAEG--RSVFPIVVEVSCTTKEGCER 440 (531)
T ss_pred cccceEEEechhhccCcccc----ccCCceecccccc--CcccceEEEeeechhhhHHH
Confidence 2458999999998742111 1111111111111 122344 4499999999986
No 263
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.39 E-value=2.1e-12 Score=131.08 Aligned_cols=84 Identities=26% Similarity=0.335 Sum_probs=66.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
-.+|++||.|++|||||+++|++....+.. +.+++.+..+|+ +++++..
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~-----------------------y~FTTl~~VPG~--------l~Y~ga~ 111 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVAD-----------------------YPFTTLEPVPGM--------LEYKGAQ 111 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccc-----------------------cCceecccccce--------EeecCce
Confidence 468999999999999999999965443322 345566677777 7889999
Q ss_pred EEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCC
Q 009378 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (536)
Q Consensus 346 i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g 380 (536)
|+|+|+||... --...+..++.||++|+|+|+...
T Consensus 112 IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 112 IQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred EEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 99999999432 124567788999999999999864
No 264
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3.5e-12 Score=129.90 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=99.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..+.|+|.|.||+|||||+++|+.....+...+ -+|-.+...+|+.+..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YP-------------------------------FTTK~i~vGhfe~~~~ 215 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYP-------------------------------FTTKGIHVGHFERGYL 215 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCC-------------------------------ccccceeEeeeecCCc
Confidence 457899999999999999999997666554432 2344455667888889
Q ss_pred EEEEEeCCCccc--------chhhHhhhccc-CCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 345 HVVVLDSPGHKD--------FVPNMISGATQ-SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 345 ~i~LIDTPGh~d--------f~~~~~~~l~~-aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.+++|||||.-+ .-...+.+++. .+++||++|.+.- +++ .+..|..-..++-..+.. ++++|+||+
T Consensus 216 R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~---cgy-~lE~Q~~L~~eIk~~f~~-p~v~V~nK~ 290 (346)
T COG1084 216 RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET---CGY-SLEEQISLLEEIKELFKA-PIVVVINKI 290 (346)
T ss_pred eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc---cCC-CHHHHHHHHHHHHHhcCC-CeEEEEecc
Confidence 999999999433 22333444544 7899999999853 222 233444433344444564 499999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|.. ..+.++++...+. ..+. ...+-+++..+.+++.
T Consensus 291 D~~--~~e~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 291 DIA--DEEKLEEIEASVL----EEGG----EEPLKISATKGCGLDK 326 (346)
T ss_pred ccc--chhHHHHHHHHHH----hhcc----ccccceeeeehhhHHH
Confidence 998 4455555544322 2232 1246778888877764
No 265
>PLN00023 GTP-binding protein; Provisional
Probab=99.37 E-value=6.5e-12 Score=129.72 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=91.2
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD- 340 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~- 340 (536)
.....++|+|+|..++|||||+++|++.... ....+.-|.+..+....+.
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~-----------------------------~~~~pTIG~d~~ik~I~~~~ 67 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSI-----------------------------ARPPQTIGCTVGVKHITYGS 67 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcc-----------------------------cccCCceeeeEEEEEEEECC
Confidence 3456789999999999999999999842210 0111122333322222222
Q ss_pred ------------cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-----
Q 009378 341 ------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----- 403 (536)
Q Consensus 341 ------------~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----- 403 (536)
.....+.||||+|++.|...+..+++.+|++|||+|.+... .+..+ ..++..+...
T Consensus 68 ~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~---SFenL----~kWl~eI~~~~~~s~ 140 (334)
T PLN00023 68 PGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR---TKTSL----QKWASEVAATGTFSA 140 (334)
T ss_pred cccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH---HHHHH----HHHHHHHHHhccccc
Confidence 12467999999999999988888899999999999998642 22222 2222222222
Q ss_pred ----------CCCcEEEEEecccccccchhHH--HHHHHHHHHHHHHcCCC
Q 009378 404 ----------GVDQLIVAVNKMDAVQYSKDRF--DSIKVQLGTFLRSCGFK 442 (536)
Q Consensus 404 ----------~vp~vIVVINKiDl~~~~~e~~--eei~~~L~~~l~~~g~~ 442 (536)
.+| +|||.||+|+......+. ....+..+.+.+..++-
T Consensus 141 p~~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 141 PLGSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ccccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 245 999999999964211011 12345667777777763
No 266
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.36 E-value=1.2e-11 Score=126.01 Aligned_cols=150 Identities=18% Similarity=0.264 Sum_probs=93.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC--
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-- 343 (536)
.++|+|+|+.|+|||||+|+|++......... .........+.+.+......+...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~---------------------~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP---------------------PDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC---------------------CCccccccCCceEEEEEEEEEEECCEE
Confidence 57999999999999999999986432221110 0000111122233333333344444
Q ss_pred eEEEEEeCCCcccchh---------------------hHh-----hhcc--cCCeEEEEeecCCCcccccccchhhHHHH
Q 009378 344 YHVVVLDSPGHKDFVP---------------------NMI-----SGAT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~---------------------~~~-----~~l~--~aD~~ILVVDas~g~~e~~~~~~~~qt~e 395 (536)
..++||||||..++.. ... ..+. .+|++||++++... .+.....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-------~l~~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-------GLKPLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-------CCCHHHHH
Confidence 5799999999554322 111 1111 38899999998742 14455566
Q ss_pred HHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEE
Q 009378 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLS 452 (536)
Q Consensus 396 ~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvS 452 (536)
.+..+.. ++| +|+|+||+|++ ....+...++.+...+...++ ++++..
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l--~~~e~~~~k~~i~~~l~~~~i-----~~~~~~ 183 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTL--TPEELKEFKQRIMEDIEEHNI-----KIYKFP 183 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcC--CHHHHHHHHHHHHHHHHHcCC-----ceECCC
Confidence 6666664 666 99999999998 344556677888888887775 556543
No 267
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=5.9e-12 Score=114.88 Aligned_cols=151 Identities=20% Similarity=0.260 Sum_probs=101.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
-++++|+|+.|.|||-|+.+++..... |. ....-|+......+....+...
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfk---------------------------Dd--ssHTiGveFgSrIinVGgK~vK 59 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFK---------------------------DD--SSHTIGVEFGSRIVNVGGKTVK 59 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhc---------------------------cc--ccceeeeeecceeeeecCcEEE
Confidence 368999999999999999999843211 10 1122344444444445556778
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCc--EEEEEecccccccchh
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQYSKD 423 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~--vIVVINKiDl~~~~~e 423 (536)
+.||||+|+++|..-+..+++.+-++|||+|++... .+...+.+ +.-++.+.-|. +|++.||-|+-...+.
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrd------sfnaLtnW-L~DaR~lAs~nIvviL~GnKkDL~~~R~V 132 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRD------SFNALTNW-LTDARTLASPNIVVILCGNKKDLDPEREV 132 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccchh------hHHHHHHH-HHHHHhhCCCcEEEEEeCChhhcChhhhh
Confidence 999999999999999999999999999999998642 12222222 22233333332 6778899999754333
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+. +...|... ..+-+.++||++|+|+++
T Consensus 133 tfl----EAs~FaqE-----nel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 133 TFL----EASRFAQE-----NELMFLETSALTGENVEE 161 (214)
T ss_pred hHH----HHHhhhcc-----cceeeeeecccccccHHH
Confidence 332 23334322 234679999999999987
No 268
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.35 E-value=1.5e-11 Score=119.50 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=97.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC--
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 342 (536)
..++|+|+|..|+|||||+++|.+..... +....+............
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~ 52 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPE-------------------------------GYPPTIGNLDPAKTIEPYRR 52 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcc-------------------------------cCCCceeeeeEEEEEEeCCC
Confidence 34899999999999999999999533211 011111111111111112
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC---CCcEEEEEecccccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---VDQLIVAVNKMDAVQ 419 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~---vp~vIVVINKiDl~~ 419 (536)
...+.+|||+|+.+|...+..+...++++++|+|..... .......+....+.... .+ +|+|.||+|+..
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~------~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~ 125 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRE------SSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFD 125 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccch------hhhHHHHHHHHHHHHhCCCCce-EEEEeccccccc
Confidence 567899999999999999999999999999999998521 13344555554555543 55 999999999986
Q ss_pred cchhHHHHHHHHH---------HHHHHHcCCCCCCccEEEEEcc--cCCCccc
Q 009378 420 YSKDRFDSIKVQL---------GTFLRSCGFKDASLTWIPLSAL--ENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L---------~~~l~~~g~~~~~i~vipvSA~--~GenI~e 461 (536)
...... .+...+ ......... ....++.+|++ .+.++.+
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~v~~ 175 (219)
T COG1100 126 EQSSSE-EILNQLNREVVLLVLAPKAVLPEV--ANPALLETSAKSLTGPNVNE 175 (219)
T ss_pred chhHHH-HHHhhhhcCcchhhhHhHHhhhhh--cccceeEeecccCCCcCHHH
Confidence 432211 111110 111001100 11237999999 8889875
No 269
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.33 E-value=4.2e-12 Score=115.33 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=105.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
-++..|+|.+|+|||+|+-++...... + .--...|+...+....+......
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs------------------~-----------sYitTiGvDfkirTv~i~G~~Vk 58 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFS------------------G-----------SYITTIGVDFKIRTVDINGDRVK 58 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccc------------------c-----------ceEEEeeeeEEEEEeecCCcEEE
Confidence 356789999999999999998732110 0 00112344444555556667788
Q ss_pred EEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHH
Q 009378 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~ 425 (536)
+.||||+|++.|...+..+++..+++++|+|++.+. .|.....+..++-..+. .+| -|+|.||.|......
T Consensus 59 LqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E---SF~Nv~rWLeei~~ncd--sv~-~vLVGNK~d~~~Rrv--- 129 (198)
T KOG0079|consen 59 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFNNVKRWLEEIRNNCD--SVP-KVLVGNKNDDPERRV--- 129 (198)
T ss_pred EEEeecccHHHHHHHHHHHccCCceEEEEEECcchh---hhHhHHHHHHHHHhcCc--ccc-ceecccCCCCcccee---
Confidence 999999999999999999999999999999999874 23323333333222221 345 589999999874211
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
-..++.+.+....|+ .+|++||+..+|++.
T Consensus 130 -V~t~dAr~~A~~mgi-----e~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 130 -VDTEDARAFALQMGI-----ELFETSAKENENVEA 159 (198)
T ss_pred -eehHHHHHHHHhcCc-----hheehhhhhcccchH
Confidence 123556666666665 679999999999975
No 270
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=112.69 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=106.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
+..+.+.++|-.++|||||+|.+....+ .+. -+.|.......+..++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~-------------------------------~ed--miptvGfnmrk~tkgn 64 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQY-------------------------------LED--MIPTVGFNMRKVTKGN 64 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccc-------------------------------hhh--hcccccceeEEeccCc
Confidence 4567899999999999999998862110 011 1112223334455677
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~~~ 420 (536)
..+.+||.||+..|...+..+.+.++++|+||||.+. +++...-.|+..++.. .++| ++|..||+|+.++
T Consensus 65 vtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~------~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 65 VTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADP------DKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGA 137 (186)
T ss_pred eEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCc------ccchhhHHHHHHHhcchhhcCCc-EEEecccccCccc
Confidence 8899999999999999999999999999999999874 3344444555555544 4677 9999999999864
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
-.. ..+...+--..+.+..+-.+.||++...||+.
T Consensus 138 L~~------~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 138 LSK------IALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred ccH------HHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 221 11222222233455667789999999999974
No 271
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.32 E-value=3.9e-12 Score=111.69 Aligned_cols=114 Identities=26% Similarity=0.275 Sum_probs=70.7
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
||+|+|..|+|||||+++|++.... .........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6999999999999999999954322 0001111122333333333444455599
Q ss_pred EEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHH---HHHHHH--cCCCcEEEEEeccc
Q 009378 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH---AQLIRS--FGVDQLIVAVNKMD 416 (536)
Q Consensus 348 LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~---l~ll~~--~~vp~vIVVINKiD 416 (536)
|||++|+..+.......+..+|++|||+|.+... .+ ....++ +..++. ..+| +|||.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~---s~----~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE---SL----EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH---HH----HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChH---HH----HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 9999999887766555588899999999998642 11 122222 222222 2355 999999998
No 272
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.3e-11 Score=116.50 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=107.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.++..+|+++|--+|||||++.+|-.. .+. +.- + |+......+++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~--E~v----------------------------ttv--P--TiGfnVE~v~yk 59 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLG--EIV----------------------------TTV--P--TIGFNVETVEYK 59 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccC--Ccc----------------------------cCC--C--ccccceeEEEEc
Confidence 466789999999999999999998521 110 001 1 222333345667
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~ 420 (536)
+..+++||..|+..+...+..++...+++|||||.++.. .+...-.+...++... +.-++++..||.|+..+
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~------Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRE------RIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHH------HHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 999999999999999999999999999999999998652 2333333444444433 23349999999999864
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
-. ..++...|....+......+-.++|.+|+|+.+
T Consensus 134 ls------~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 134 LS------AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred CC------HHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 22 133444444455556677889999999999876
No 273
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=126.60 Aligned_cols=158 Identities=20% Similarity=0.235 Sum_probs=99.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.--|++||-|||||||||+++......|... ..++..+.-|+ +.. .....
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadY-----------------------pFTTL~PnLGv------V~~-~~~~s 208 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADY-----------------------PFTTLVPNLGV------VRV-DGGES 208 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCC-----------------------ccccccCcccE------EEe-cCCCc
Confidence 3458999999999999999999776655443 23334444444 222 35667
Q ss_pred EEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 346 i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
|++-|.||... +-...++.+..+.++++|||.+...-....+.+.....|+..+-..+.-++.|||+||+|+.
T Consensus 209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 99999999432 23334556677999999999985421111222222333333332333334489999999966
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. +.+.++.+.+.+.... ++ ..+++|||++++|+.+
T Consensus 289 ~-~~e~~~~~~~~l~~~~---~~----~~~~~ISa~t~~g~~~ 323 (369)
T COG0536 289 L-DEEELEELKKALAEAL---GW----EVFYLISALTREGLDE 323 (369)
T ss_pred c-CHHHHHHHHHHHHHhc---CC----CcceeeehhcccCHHH
Confidence 4 4566665555555443 22 1123499999999986
No 274
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=9.9e-12 Score=124.05 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=97.4
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEE-EEEeec
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDS 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~-~~~~~~ 341 (536)
..+++||.|+|.+|+|||+|||+|+.......... |++.+.. +....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v-------------------------------g~~t~~~~~~~~~~ 84 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV-------------------------------GVGTDITTRLRLSY 84 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeec-------------------------------ccCCCchhhHHhhc
Confidence 56789999999999999999999994332221110 1111100 011223
Q ss_pred CCeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC-CcEEEEEe
Q 009378 342 KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVN 413 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v-p~vIVVIN 413 (536)
....++||||||..+ +.......+...|++++++++.... .......+.-+...+. .++|+|+|
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra--------L~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA--------LGTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcc--------ccCCHHHHHHHHHhccCceeEEEEe
Confidence 557899999999655 6666778888999999999998762 2233333333333333 55999999
Q ss_pred ccccccc----c-------hhH---HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 414 KMDAVQY----S-------KDR---FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 414 KiDl~~~----~-------~e~---~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..|+... + +.. +++-.+.+.+++.. --|++.+++..++|+.+
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~wgl~~ 212 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE------VKPVVAVSGRLPWGLKE 212 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------cCCeEEeccccCccHHH
Confidence 9998642 1 111 22222334444433 12678899899999975
No 275
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.4e-11 Score=109.51 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=105.4
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
-.++-+|+|..|+|||.|+..++..+.... ....-|+.+............
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmad-----------------------------cphtigvefgtriievsgqki 60 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMAD-----------------------------CPHTIGVEFGTRIIEVSGQKI 60 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhc-----------------------------CCcccceecceeEEEecCcEE
Confidence 357889999999999999999985432211 111234443334444555678
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCc--EEEEEecccccccch
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQYSK 422 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~--vIVVINKiDl~~~~~ 422 (536)
.+.||||.|+++|...+..+++.+-+++.|+|.+..... ......+.-++.+-.|. ++++.||.|+.....
T Consensus 61 klqiwdtagqerfravtrsyyrgaagalmvyditrrsty-------nhlsswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY-------NHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhh-------hhHHHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 899999999999999999999999999999999865211 11222222333333332 678889999975444
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..++ +.+.+.+..|+ .|+++||++|+|+++
T Consensus 134 v~ye----eak~faeengl-----~fle~saktg~nved 163 (215)
T KOG0097|consen 134 VTYE----EAKEFAEENGL-----MFLEASAKTGQNVED 163 (215)
T ss_pred CcHH----HHHHHHhhcCe-----EEEEecccccCcHHH
Confidence 4443 44556666665 789999999999986
No 276
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.28 E-value=1.7e-11 Score=117.08 Aligned_cols=114 Identities=23% Similarity=0.311 Sum_probs=67.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
...|.|+|+.|+|||+|+.+|.+.....+-. ..+ ..++.. .-...+..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t--------------------------S~e--~n~~~~----~~~~~~~~ 50 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVT--------------------------SME--NNIAYN----VNNSKGKK 50 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B-----------------------------SS--EEEECC----GSSTCGTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeec--------------------------ccc--CCceEE----eecCCCCE
Confidence 4579999999999999999998542110000 000 000000 01124567
Q ss_pred EEEEeCCCcccchhhHhhh---cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH----H----cCCCcEEEEEec
Q 009378 346 VVVLDSPGHKDFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----S----FGVDQLIVAVNK 414 (536)
Q Consensus 346 i~LIDTPGh~df~~~~~~~---l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~----~----~~vp~vIVVINK 414 (536)
+.|||+|||.++....... +..+.++|||||+... ....++..++|. . .+.+|++|+.||
T Consensus 51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK 121 (181)
T PF09439_consen 51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQKNKPPILIACNK 121 (181)
T ss_dssp ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-
T ss_pred EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeC
Confidence 9999999999988777665 7889999999999741 122222222222 2 134569999999
Q ss_pred cccccc
Q 009378 415 MDAVQY 420 (536)
Q Consensus 415 iDl~~~ 420 (536)
.|+..+
T Consensus 122 ~Dl~~A 127 (181)
T PF09439_consen 122 QDLFTA 127 (181)
T ss_dssp TTSTT-
T ss_pred cccccc
Confidence 998754
No 277
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=112.87 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=101.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.-.++|+++|..-+|||+|+-|+......- +.+.+. .+ +| . .....++...
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~--kHlsTl--QA------SF----------------~---~kk~n~ed~r 61 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNC--KHLSTL--QA------SF----------------Q---NKKVNVEDCR 61 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcch--hhHHHH--HH------HH----------------h---hcccccccce
Confidence 346889999999999999999998432211 000000 00 00 0 0011123345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCC-cEEEEEecccccccch
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDAVQYSK 422 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp-~vIVVINKiDl~~~~~ 422 (536)
..+.||||+|+++|-..-.-+++.++++|||+|.+.. ..|+++ ..+++++-..+|.. -++||.||+|+....
T Consensus 62 a~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr---dSFqKV---KnWV~Elr~mlGnei~l~IVGNKiDLEeeR- 134 (218)
T KOG0088|consen 62 ADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR---DSFQKV---KNWVLELRTMLGNEIELLIVGNKIDLEEER- 134 (218)
T ss_pred eeeeeeeccchHhhhccCceEEeCCCceEEEEeccch---HHHHHH---HHHHHHHHHHhCCeeEEEEecCcccHHHhh-
Confidence 6799999999999988888889999999999999864 233333 33333333334432 278999999986322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.-..++...+.+..|. .++.+||+.+.||.+
T Consensus 135 ---~Vt~qeAe~YAesvGA-----~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 135 ---QVTRQEAEAYAESVGA-----LYMETSAKDNVGISE 165 (218)
T ss_pred ---hhhHHHHHHHHHhhch-----hheecccccccCHHH
Confidence 2334566667777776 579999999999987
No 278
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.25 E-value=7.1e-11 Score=114.62 Aligned_cols=153 Identities=22% Similarity=0.182 Sum_probs=98.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+..+|+++|..|+|||+|+.+++.....-. .+.+.+ ........++....
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~------------------------y~ptie------d~y~k~~~v~~~~~ 51 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVED------------------------YDPTIE------DSYRKELTVDGEVC 51 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccc------------------------cCCCcc------ccceEEEEECCEEE
Confidence 457899999999999999999984322111 011111 01111122334556
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEecccccccchh
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKD 423 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINKiDl~~~~~e 423 (536)
.+.|+||+|.+.|......+++.+|+.|+|++.+... .|+.+ .+..+.+...+. ..+| +|+|+||+|+......
T Consensus 52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~---SF~~~-~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~V 126 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRS---SFEEA-KQLREQILRVKGRDDVP-IILVGNKCDLERERQV 126 (196)
T ss_pred EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHH---HHHHH-HHHHHHHHHhhCcCCCC-EEEEEEcccchhcccc
Confidence 7889999999999999999999999999999998642 22211 122222211111 2345 9999999999853333
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ +...+...+++ +|+++||+...|+.+
T Consensus 127 ~~e----eg~~la~~~~~-----~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 127 SEE----EGKALARSWGC-----AFIETSAKLNYNVDE 155 (196)
T ss_pred CHH----HHHHHHHhcCC-----cEEEeeccCCcCHHH
Confidence 322 23334455554 689999999999987
No 279
>PTZ00099 rab6; Provisional
Probab=99.24 E-value=9.4e-11 Score=111.67 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=72.6
Q ss_pred EeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecc
Q 009378 338 YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKM 415 (536)
Q Consensus 338 ~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKi 415 (536)
.+......+.||||||++.|...+..+++.+|++|||+|++... . +.....++..++... .+| +|||+||+
T Consensus 23 ~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~---s---f~~~~~w~~~i~~~~~~~~p-iilVgNK~ 95 (176)
T PTZ00099 23 YLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ---S---FENTTKWIQDILNERGKDVI-IALVGNKT 95 (176)
T ss_pred EECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCe-EEEEEECc
Confidence 34445578999999999999888888899999999999998642 1 222223333333332 344 89999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|+........+ +...+....++ .|+++||++|+||.+
T Consensus 96 DL~~~~~v~~~----e~~~~~~~~~~-----~~~e~SAk~g~nV~~ 132 (176)
T PTZ00099 96 DLGDLRKVTYE----EGMQKAQEYNT-----MFHETSAKAGHNIKV 132 (176)
T ss_pred ccccccCCCHH----HHHHHHHHcCC-----EEEEEECCCCCCHHH
Confidence 98642222222 22233333333 679999999999986
No 280
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.4e-11 Score=113.35 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=106.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
.+....|+|+|.-+||||||+.++-...... .+ .++... ..+ |.......++..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~--------------~~--------~l~~~k--i~~--tvgLnig~i~v~ 67 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKA--------------YG--------GLNPSK--ITP--TVGLNIGTIEVC 67 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhh--------------hc--------CCCHHH--eec--ccceeecceeec
Confidence 3556789999999999999999885211100 00 000000 011 222223334445
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..+.|||..|++.....+..++..++++|+||||+... .|.....+.+.+...-..-++| +++.+||-|+.+ .
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~e---R~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~--~ 141 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRE---RFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQN--A 141 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHH---HHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhh--h
Confidence 788999999999999999999999999999999999742 2222233344444444445788 899999999874 2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....++...+.. .+..+ ....+|.||||++|+||.+
T Consensus 142 ~~~~El~~~~~~-~e~~~--~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 142 MEAAELDGVFGL-AELIP--RRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred hhHHHHHHHhhh-hhhcC--CccCccccchhhhcccHHH
Confidence 333344433332 23333 2345789999999999987
No 281
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.22 E-value=2.4e-11 Score=126.58 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=62.9
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
..++.++||||+|...-... ....+|++|+|++...|. .++......++++ -|+|+||+|+...
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd------~iq~~k~gi~E~a-------DIiVVNKaDl~~~ 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGD------ELQGIKKGIMELA-------DLIVINKADGDNK 209 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchH------HHHHHHhhhhhhh-------heEEeehhcccch
Confidence 35788999999996532211 355699999998744441 1222122122222 3899999999842
Q ss_pred chhHHHHHHHHHHHHHHHcCCC--CCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~--~~~i~vipvSA~~GenI~e 461 (536)
...+....++...+...... .-..+++++||++|+||.+
T Consensus 210 --~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIde 250 (332)
T PRK09435 210 --TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDE 250 (332)
T ss_pred --hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHH
Confidence 23344555566555432210 1124789999999999986
No 282
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.20 E-value=7.7e-11 Score=108.85 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=101.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc-ccccchhhhhHHHHhhhCCCccchhcccccc--ccccccceEEEEEEEEeec
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG-RITQKQMHKYEKEAKLQGKGSFAYAWALDES--AEERERGITMTVAVAYFDS 341 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~-~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~--~~e~~~GiTi~~~~~~~~~ 341 (536)
-+++++++|..-+|||+|+..++.... .+...++ ..|.. -.|..+|
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptv-------------------gvdffarlie~~pg------------ 55 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTV-------------------GVDFFARLIELRPG------------ 55 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCcc-------------------chHHHHHHHhcCCC------------
Confidence 468899999999999999999983221 1111110 01111 1111222
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCC---cEEEEEeccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNKMDAV 418 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp---~vIVVINKiDl~ 418 (536)
....+.||||+|+++|...+.++++++=++++|+|.+... .|+.+..+.+| .....+-| -+.+|..|.|+.
T Consensus 56 ~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~---sfehv~~w~~e---a~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 56 YRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRE---SFEHVENWVKE---AAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred cEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchh---hHHHHHHHHHH---HHHhcCCCCeeEEEEeccccchh
Confidence 2356899999999999999999999999999999998642 22222223333 23333322 157789999998
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...... .++...+.+.+|+ .||++||++|.|+++
T Consensus 130 SqRqVt----~EEaEklAa~hgM-----~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 130 SQRQVT----AEEAEKLAASHGM-----AFVETSAKNGCNVEE 163 (213)
T ss_pred hhcccc----HHHHHHHHHhcCc-----eEEEecccCCCcHHH
Confidence 543333 4556677778887 789999999999987
No 283
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3e-11 Score=111.01 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=74.6
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~---~vp~vIVVINKiDl~~~ 420 (536)
..+.||||+|+++|...+-...+.|=++||++|.+.. ..| -.++..+..++.. .-|.||++.||.|+.+.
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e---qSF----LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE---QSF----LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch---HHH----HHHHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 5688999999999999998999999999999998853 122 1223333333332 34669999999999743
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
... -..+...+....|+ |+|++||-+|.|+.+
T Consensus 140 R~V----s~~qa~~La~kygl-----PYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 140 RVV----SEDQAAALADKYGL-----PYFETSACTGTNVEK 171 (219)
T ss_pred hhh----hHHHHHHHHHHhCC-----CeeeeccccCcCHHH
Confidence 222 23455566666776 899999999999986
No 284
>PRK13768 GTPase; Provisional
Probab=99.17 E-value=1.2e-10 Score=117.34 Aligned_cols=115 Identities=21% Similarity=0.314 Sum_probs=69.6
Q ss_pred CeEEEEEeCCCcccch------hhHhhhccc--CCeEEEEeecCCCcccccccchhhHHHHHHHHH-----HHcCCCcEE
Q 009378 343 NYHVVVLDSPGHKDFV------PNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-----RSFGVDQLI 409 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~------~~~~~~l~~--aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll-----~~~~vp~vI 409 (536)
+..+.||||||+.++. ......+.. ++++|+|+|+..+.. ....+...++ ...++| +|
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~--------~~d~~~~~~l~~~~~~~~~~~-~i 166 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT--------PSDFVSLLLLALSVQLRLGLP-QI 166 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC--------HHHHHHHHHHHHHHHHHcCCC-EE
Confidence 3479999999965532 122223333 899999999976521 2222222221 245777 89
Q ss_pred EEEecccccccchhHHHHHHHHHH------------------------HHHHHcCCCCCCccEEEEEcccCCCcccCCCC
Q 009378 410 VAVNKMDAVQYSKDRFDSIKVQLG------------------------TFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (536)
Q Consensus 410 VVINKiDl~~~~~e~~eei~~~L~------------------------~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~ 465 (536)
+|+||+|+....+ .+++.+.+. ..++..+. ..+++++||++++|+.+
T Consensus 167 ~v~nK~D~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~---~~~vi~iSa~~~~gl~~---- 237 (253)
T PRK13768 167 PVLNKADLLSEEE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL---PVRVIPVSAKTGEGFDE---- 237 (253)
T ss_pred EEEEhHhhcCchh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC---CCcEEEEECCCCcCHHH----
Confidence 9999999985322 222222111 22333332 34789999999999985
Q ss_pred cccccccchhhHHHHHHhcCC
Q 009378 466 GRLLSWYKGPCLLDAIDSLRP 486 (536)
Q Consensus 466 ~~~~~Wy~g~tLle~L~~l~~ 486 (536)
|++.|....+
T Consensus 238 -----------L~~~I~~~l~ 247 (253)
T PRK13768 238 -----------LYAAIQEVFC 247 (253)
T ss_pred -----------HHHHHHHHcC
Confidence 8888866543
No 285
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.16 E-value=1.5e-10 Score=104.63 Aligned_cols=152 Identities=20% Similarity=0.264 Sum_probs=104.9
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (536)
..+.++|.++|--++|||||+..|.+... ....+..|..+. .+++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~------------------------------~hltpT~GFn~k----~v~~~ 59 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP------------------------------RHLTPTNGFNTK----KVEYD 59 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh------------------------------hhccccCCcceE----EEeec
Confidence 36789999999999999999999974321 122233444322 2233
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH---cCCCcEEEEEeccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~---~~vp~vIVVINKiDl~ 418 (536)
..+.+++||..|+......+..++...|.+|||||.+..- . +.....+..+++.. ..+| +.|..||-|++
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~k---r---feE~~~el~ELleeeKl~~vp-vlIfankQdll 132 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEK---R---FEEISEELVELLEEEKLAEVP-VLIFANKQDLL 132 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchH---h---HHHHHHHHHHHhhhhhhhccc-eeehhhhhHHH
Confidence 3488999999999999999999999999999999976532 1 23344444455444 3456 88999999998
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+ ...+++... +.-.++.+..+.+-.+||++++|+..
T Consensus 133 ta--a~~eeia~k----lnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 133 TA--AKVEEIALK----LNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred hh--cchHHHHHh----cchhhhhhceEEeeeCccccccCccC
Confidence 43 223333322 22234455566788999999999875
No 286
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.16 E-value=4.7e-10 Score=116.54 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=53.6
Q ss_pred EEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEE------------
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV------------ 336 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~------------ 336 (536)
|+|+|.+|+|||||+++|++....+... ...+.++..|+..-...
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~-----------------------pftT~~p~~g~~~~~~~~~~~r~~~~~~~ 57 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANY-----------------------PFTTIDPNVGVGYVRVECPCKELGVSCNP 57 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCC-----------------------CCccccceeEEEEEecCCCchhhhhhhcc
Confidence 6899999999999999999644322111 11222233332211000
Q ss_pred ---EEee-cCCeEEEEEeCCCc----ccc---hhhHhhhcccCCeEEEEeecCC
Q 009378 337 ---AYFD-SKNYHVVVLDSPGH----KDF---VPNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 337 ---~~~~-~~~~~i~LIDTPGh----~df---~~~~~~~l~~aD~~ILVVDas~ 379 (536)
.... .....+.||||||. ..+ ....+..++.+|++|+|||+..
T Consensus 58 ~~~~~~~~~~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 58 RYGKCIDGKRYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cccccccCcCcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 0001 12357999999996 223 2345667899999999999974
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.16 E-value=9.6e-10 Score=110.55 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=74.1
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
+....++|+|+|.+|+|||||+|+|++........ ..+.|..........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~------------------------------~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA------------------------------FQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC------------------------------CCCceEEEEEEEEEE
Confidence 34567899999999999999999999653321110 112233333344455
Q ss_pred CCeEEEEEeCCCcccch------hh----Hhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCC---
Q 009378 342 KNYHVVVLDSPGHKDFV------PN----MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV--- 405 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~------~~----~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~v--- 405 (536)
.+..++||||||..+.. .. ...++ ...|++|||....... ........+..+.. ++.
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r-------~~~~d~~llk~I~e~fG~~i~ 149 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR-------RDYLDLPLLRAITDSFGPSIW 149 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC-------CCHHHHHHHHHHHHHhChhhH
Confidence 77889999999966541 11 11122 2578888886554321 12233344444433 332
Q ss_pred CcEEEEEecccccc
Q 009378 406 DQLIVAVNKMDAVQ 419 (536)
Q Consensus 406 p~vIVVINKiDl~~ 419 (536)
.++|||+||+|...
T Consensus 150 ~~~ivV~T~~d~~~ 163 (249)
T cd01853 150 RNAIVVLTHAASSP 163 (249)
T ss_pred hCEEEEEeCCccCC
Confidence 35999999999874
No 288
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.15 E-value=6.8e-10 Score=110.35 Aligned_cols=151 Identities=18% Similarity=0.307 Sum_probs=95.7
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee-cCCeEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYHV 346 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i 346 (536)
||+++|+.++||||+.+.+++....- +.+.-|.|+++....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~------------------------------dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR------------------------------DTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG------------------------------GGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch------------------------------hccccCCcCCceEEEEecCCCcEE
Confidence 68999999999999999998543211 11123455555555554 356799
Q ss_pred EEEeCCCcccchhhH-----hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 009378 347 VVLDSPGHKDFVPNM-----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 347 ~LIDTPGh~df~~~~-----~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~ 419 (536)
.|||+||+..+.... ..-++.+.++|||+|+....... -.......+..+.+. +++ +.|.++|||++.
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~----~l~~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~ 125 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDE----DLAYLSDCIEALRQYSPNIK-VFVFIHKMDLLS 125 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHH----HHHHHHHHHHHHHHHSTT-E-EEEEEE-CCCS-
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHH----HHHHHHHHHHHHHHhCCCCe-EEEEEeecccCC
Confidence 999999998876652 44467899999999998442221 223444444555554 333 899999999984
Q ss_pred c--chhHHHHHHHHHHHHHHHcCCCCCCccEEEEEccc
Q 009378 420 Y--SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (536)
Q Consensus 420 ~--~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~ 455 (536)
. ..+.++++.+.+...+...++. .+.++.+|...
T Consensus 126 ~~~r~~~~~~~~~~i~~~~~~~~~~--~~~~~~TSI~D 161 (232)
T PF04670_consen 126 EDEREEIFRDIQQRIRDELEDLGIE--DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc--ceEEEeccCcC
Confidence 2 2355777888888888877754 46788888775
No 289
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.13 E-value=5.5e-11 Score=118.75 Aligned_cols=117 Identities=17% Similarity=0.327 Sum_probs=61.9
Q ss_pred EEEEEeCCCcccchhhH------hhhcc--cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 345 HVVVLDSPGHKDFVPNM------ISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~------~~~l~--~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.+.|+||||+.++...+ ...+. ..=++|+++|+..-.. ...+.......+.....+++| .|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~---~~~f~s~~L~s~s~~~~~~lP-~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD---PSKFVSSLLLSLSIMLRLELP-HVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS---HHHHHHHHHHHHHHHHHHTSE-EEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC---hhhHHHHHHHHHHHHhhCCCC-EEEeeeccC
Confidence 69999999987754433 22233 3558899999884311 111222333333445557888 899999999
Q ss_pred ccccch----------hH--------HHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHH
Q 009378 417 AVQYSK----------DR--------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLL 478 (536)
Q Consensus 417 l~~~~~----------e~--------~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLl 478 (536)
++.... +. +..+.+.+..++...+. ...++|+|+.+++|+.+ |+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~~~~~~---------------L~ 229 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDGEGMEE---------------LL 229 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTTTTHHH---------------HH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCChHHHHH---------------HH
Confidence 985210 01 12233344444444443 22789999999999985 88
Q ss_pred HHHHh
Q 009378 479 DAIDS 483 (536)
Q Consensus 479 e~L~~ 483 (536)
..|++
T Consensus 230 ~~id~ 234 (238)
T PF03029_consen 230 AAIDK 234 (238)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 290
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.13 E-value=2.7e-10 Score=119.90 Aligned_cols=170 Identities=21% Similarity=0.262 Sum_probs=91.9
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
..+++|+|+|.+|+|||||||+|.+.... +.+. .....-.++ .... .+....-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~----------------d~~a--A~tGv~etT--------~~~~-~Y~~p~~ 85 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHE----------------DEGA--APTGVVETT--------MEPT-PYPHPKF 85 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TT----------------STTS----SSSHSCC--------TS-E-EEE-SS-
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCC----------------CcCc--CCCCCCcCC--------CCCe-eCCCCCC
Confidence 45789999999999999999999742110 0000 000000111 1111 1112233
Q ss_pred eEEEEEeCCCccc--chhhH---hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 344 YHVVVLDSPGHKD--FVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 344 ~~i~LIDTPGh~d--f~~~~---~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.+++|||.||... |.... ...+...|++|+|.+.. +......+...+..++.+ +.+|-+|+|.-
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----------f~~ndv~La~~i~~~gK~-fyfVRTKvD~D 154 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----------FTENDVQLAKEIQRMGKK-FYFVRTKVDSD 154 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------------HHHHHHHHHHHHTT-E-EEEEE--HHHH
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----------CchhhHHHHHHHHHcCCc-EEEEEeccccc
Confidence 4699999999432 22111 12466789888876644 445666777778888887 99999999961
Q ss_pred -c---------cc-hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccCCCCcccccccchhhHHHHHH-hcCC
Q 009378 419 -Q---------YS-KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRP 486 (536)
Q Consensus 419 -~---------~~-~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~~~~~~~~~Wy~g~tLle~L~-~l~~ 486 (536)
. ++ +..+++|++.....|+..|...+ ++|-||...-.. |.-+.|.++|. .++.
T Consensus 155 l~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P--~VFLVS~~dl~~-------------yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 155 LYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEP--QVFLVSSFDLSK-------------YDFPKLEETLEKDLPA 219 (376)
T ss_dssp HHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS----EEEB-TTTTTS-------------TTHHHHHHHHHHHS-G
T ss_pred HhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcC--ceEEEeCCCccc-------------CChHHHHHHHHHHhHH
Confidence 1 11 23467888888888888887555 569999885332 34456777774 3443
No 291
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=6e-10 Score=107.39 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=76.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
..+..|.++|..|+|||+|+-.|+...... .-+.+......+..+.
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~----------------------------------TvtSiepn~a~~r~gs 81 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRG----------------------------------TVTSIEPNEATYRLGS 81 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccC----------------------------------eeeeeccceeeEeecC
Confidence 334569999999999999999998431100 0011111112233455
Q ss_pred eEEEEEeCCCcccchhhHhhhcc---cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEeccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMD 416 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~---~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiD 416 (536)
..+.|||.|||.+........+. .+-++|||||+..-. .+ +.........++.. .+.++++|+.||.|
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--k~---vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--KN---VRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--hh---hHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 66899999999999888877776 699999999988531 11 11112222222222 24466999999999
Q ss_pred cccc
Q 009378 417 AVQY 420 (536)
Q Consensus 417 l~~~ 420 (536)
+.-+
T Consensus 157 l~tA 160 (238)
T KOG0090|consen 157 LFTA 160 (238)
T ss_pred hhhc
Confidence 8754
No 292
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.4e-09 Score=116.44 Aligned_cols=147 Identities=26% Similarity=0.336 Sum_probs=108.0
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
+..+++.|+|||++|.||||||..|+... ..++..+...-||+ ...
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~----------------------------tk~ti~~i~GPiTv------vsg 110 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRF----------------------------TKQTIDEIRGPITV------VSG 110 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHH----------------------------HHhhhhccCCceEE------eec
Confidence 34567889999999999999999998321 11111222233443 234
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
....|+|+.+|. -+..|+.-+..+|++||+||++-| +.-.+.+.+.++...|.|+++-|++..|+.. .
T Consensus 111 K~RRiTflEcp~---Dl~~miDvaKIaDLVlLlIdgnfG--------fEMETmEFLnil~~HGmPrvlgV~ThlDlfk-~ 178 (1077)
T COG5192 111 KTRRITFLECPS---DLHQMIDVAKIADLVLLLIDGNFG--------FEMETMEFLNILISHGMPRVLGVVTHLDLFK-N 178 (1077)
T ss_pred ceeEEEEEeChH---HHHHHHhHHHhhheeEEEeccccC--------ceehHHHHHHHHhhcCCCceEEEEeeccccc-C
Confidence 667899999993 355677778889999999999977 5568899999999999999999999999986 4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccC
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~G 456 (536)
+..+..+++.|...+..--++. ..+|.+|...+
T Consensus 179 ~stLr~~KKrlkhRfWtEiyqG--aKlFylsgV~n 211 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIYQG--AKLFYLSGVEN 211 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHcCC--ceEEEeccccc
Confidence 5667777777776654433322 35688887654
No 293
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=9.1e-11 Score=104.97 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=98.6
Q ss_pred EEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEEEe
Q 009378 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (536)
Q Consensus 271 IvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~LID 350 (536)
++|..++|||-|+-|+-. +..- .++|.. .-||........++.....+.+||
T Consensus 2 llgds~~gktcllir~kd--gafl---------------~~~fis-----------tvgid~rnkli~~~~~kvklqiwd 53 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKD--GAFL---------------AGNFIS-----------TVGIDFRNKLIDMDDKKVKLQIWD 53 (192)
T ss_pred ccccCccCceEEEEEecc--Ccee---------------cCceee-----------eeeeccccceeccCCcEEEEEEee
Confidence 689999999999877641 1110 011111 122322223333455667899999
Q ss_pred CCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHH
Q 009378 351 SPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (536)
Q Consensus 351 TPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~ 430 (536)
|.|+++|..-+..+++.+|+++|++|.... ..|+.++.+..++.+..+.. +. +.++.||+|+........ .
T Consensus 54 tagqerfrsvt~ayyrda~allllydiank---asfdn~~~wlsei~ey~k~~-v~-l~llgnk~d~a~er~v~~----d 124 (192)
T KOG0083|consen 54 TAGQERFRSVTHAYYRDADALLLLYDIANK---ASFDNCQAWLSEIHEYAKEA-VA-LMLLGNKCDLAHERAVKR----D 124 (192)
T ss_pred ccchHHHhhhhHhhhcccceeeeeeecccc---hhHHHHHHHHHHHHHHHHhh-Hh-Hhhhccccccchhhcccc----c
Confidence 999999999999999999999999998864 34555555555555544432 32 678999999974222111 2
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 431 ~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+-..+.+..++ ||+++||++|-|++-
T Consensus 125 dg~kla~~y~i-----pfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 125 DGEKLAEAYGI-----PFMETSAKTGFNVDL 150 (192)
T ss_pred hHHHHHHHHCC-----CceeccccccccHhH
Confidence 23334444554 899999999999974
No 294
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.1e-10 Score=104.06 Aligned_cols=151 Identities=22% Similarity=0.181 Sum_probs=99.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+..+|.++|--|+||+|++-+|---.+. . .. + |+......+.+++.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv--t----------------------------tk--P--tigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV--T----------------------------TK--P--TIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc--c----------------------------cC--C--CCCcCccccccccc
Confidence 5678999999999999998887511110 0 00 1 11122223455888
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccch
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~ 422 (536)
.+.+||..|+....+-+..++...|.+|+|||..+.. .+...-.+...++.+- ....++|+.||+|....
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~d------ris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRD------RISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchh------hhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--
Confidence 9999999999999999999999999999999998642 1222233344444332 22338899999998642
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....++...|.-..+++..+++|..||.+|+|++.
T Consensus 135 ----~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 135 ----LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred ----hhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 12222222222223334557899999999999986
No 295
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.1e-09 Score=97.25 Aligned_cols=150 Identities=20% Similarity=0.206 Sum_probs=104.1
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+..+|+.+|-.++||||++-.|.......+ -+.-|. ......+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~------------------------------ipTvGF----nvetVtykN~ 61 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT------------------------------IPTVGF----NVETVTYKNV 61 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc------------------------------ccccce----eEEEEEeeee
Confidence 467899999999999999999862211100 011222 2223456788
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--c-CCCcEEEEEecccccccc
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--F-GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~-~vp~vIVVINKiDl~~~~ 421 (536)
.|++||..|+....+.+..++....++|||+|+... +.+...-.|...++.. + ..+ ++|..||-|+..+.
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~------dr~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR------DRIEEARNELHRIINDREMRDAI-ILILANKQDLPDAM 134 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccch------hhHHHHHHHHHHHhCCHhhhcce-EEEEecCccccccc
Confidence 999999999999999999999999999999998854 2233333444444432 2 234 78889999998643
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
. . +++..+++-..+....+-+.|++|.+|+|+.+
T Consensus 135 ~--p----qei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 135 K--P----QEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred C--H----HHHHHHhccccccCCccEeeccccccchhHHH
Confidence 2 2 33444554444666777889999999999876
No 296
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.04 E-value=2.5e-09 Score=114.28 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=54.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEE----------EE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV----------AV 336 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~----------~~ 336 (536)
++|+|+|.+|+|||||+|+|++....+... ...+.++..|+..-. ..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y-----------------------~f~t~~p~~g~~~v~~~~~~~r~~~~~ 58 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANY-----------------------PFTTIDPNVGVAYVRVECPCKELGVKC 58 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCC-----------------------CCcceeeeeeeeeeccCCchhhhhhhh
Confidence 579999999999999999999654322111 111222222221100 00
Q ss_pred EE-----e-ecCCeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecC
Q 009378 337 AY-----F-DSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (536)
Q Consensus 337 ~~-----~-~~~~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas 378 (536)
.. . ......+.|+||||... .....+..++.+|++++|||+.
T Consensus 59 ~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 59 NPRNGKCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred ccccccccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 00 0 01235689999999422 3335566789999999999997
No 297
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.03 E-value=2.2e-09 Score=105.19 Aligned_cols=143 Identities=21% Similarity=0.294 Sum_probs=83.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|+|+|..|+||||++|.|++........ ....+|...........+..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~-----------------------------~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS-----------------------------SAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T-----------------------------TTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc-----------------------------ccCCcccccceeeeeecceEE
Confidence 589999999999999999999654321110 012233333333346688999
Q ss_pred EEEeCCCccc-------chhhHhh----hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cC---CCcEEEE
Q 009378 347 VVLDSPGHKD-------FVPNMIS----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQLIVA 411 (536)
Q Consensus 347 ~LIDTPGh~d-------f~~~~~~----~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~---vp~vIVV 411 (536)
+||||||..+ ....... ....++++|||+.... +....+..+..+.. +| .+++|||
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r---------~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR---------FTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc---------chHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 9999999432 1122222 2355899999999872 33444555544443 33 2469999
Q ss_pred EecccccccchhHHHHHH-----HHHHHHHHHcCCCCCCccEEEEEcc
Q 009378 412 VNKMDAVQYSKDRFDSIK-----VQLGTFLRSCGFKDASLTWIPLSAL 454 (536)
Q Consensus 412 INKiDl~~~~~e~~eei~-----~~L~~~l~~~g~~~~~i~vipvSA~ 454 (536)
++..|...... +++.. ..|+.+++.++- .++.+...
T Consensus 123 fT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~~-----R~~~f~n~ 163 (212)
T PF04548_consen 123 FTHADELEDDS--LEDYLKKESNEALQELIEKCGG-----RYHVFNNK 163 (212)
T ss_dssp EEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTTT-----CEEECCTT
T ss_pred hhhcccccccc--HHHHHhccCchhHhHHhhhcCC-----EEEEEecc
Confidence 99999875322 22222 357778887774 34555544
No 298
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.03 E-value=3.4e-10 Score=105.54 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=43.4
Q ss_pred CCeEEEEEeCCCccc----chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 342 KNYHVVVLDSPGHKD----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d----f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
....+.||||||... ....+..++..+|++|+|+++... +.....+.+........+.+|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~--------~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD--------LTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST--------GGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc--------cchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 446699999999533 224456677889999999999975 333333333333333444599999995
No 299
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.02 E-value=3.1e-09 Score=109.34 Aligned_cols=122 Identities=13% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009378 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
......++|+|+|.+|+|||||+|+|++......... . ..+.+. ......
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f----------------------~------s~t~~~--~~~~~~ 82 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF----------------------Q------SEGLRP--MMVSRT 82 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC----------------------C------CcceeE--EEEEEE
Confidence 3446688999999999999999999996543222110 0 011111 111223
Q ss_pred cCCeEEEEEeCCCcccch---hhHhhhc------ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cC---CCc
Q 009378 341 SKNYHVVVLDSPGHKDFV---PNMISGA------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQ 407 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~---~~~~~~l------~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~---vp~ 407 (536)
..+..++||||||..+.. ......+ ..+|++|||+...... +....+..+..+.. +| ..+
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-------~~~~DkqlLk~Iqe~FG~~iw~~ 155 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-------VDTLDGQVIRAITDSFGKDIWRK 155 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-------CCHHHHHHHHHHHHHhhhhhhcc
Confidence 467899999999966531 1111111 2589999995543221 11233333333333 22 135
Q ss_pred EEEEEecccccc
Q 009378 408 LIVAVNKMDAVQ 419 (536)
Q Consensus 408 vIVVINKiDl~~ 419 (536)
+|||+|+.|...
T Consensus 156 ~IVVfTh~d~~~ 167 (313)
T TIGR00991 156 SLVVLTHAQFSP 167 (313)
T ss_pred EEEEEECCccCC
Confidence 899999999774
No 300
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.96 E-value=8.9e-09 Score=99.36 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=98.2
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEE-EEEEEEe-ecC
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYF-DSK 342 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi-~~~~~~~-~~~ 342 (536)
..++++|||...+|||.|+-.++.. .++.+..+.+.- ....... +..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~-------------------------------~fp~~yvPTVFdnys~~v~V~dg~ 51 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTN-------------------------------AFPEEYVPTVFDNYSANVTVDDGK 51 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccC-------------------------------cCcccccCeEEccceEEEEecCCC
Confidence 4689999999999999999887621 111111121110 0111223 245
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-CCCcEEEEEecccccccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~vp~vIVVINKiDl~~~~ 421 (536)
...+.||||.|+++|-..+...+.++|++|++++..... .++.+ ..+++-++.+.. ++| +|+|.+|.|+...
T Consensus 52 ~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~---S~~nv--~~kW~pEi~~~cp~vp-iiLVGtk~DLr~d- 124 (198)
T KOG0393|consen 52 PVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPE---SFENV--KSKWIPEIKHHCPNVP-IILVGTKADLRDD- 124 (198)
T ss_pred EEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChh---hHHHH--HhhhhHHHHhhCCCCC-EEEEeehHHhhhC-
Confidence 567899999999999876666888999999999887652 22211 223332333322 466 9999999999832
Q ss_pred hhHHHHHH---------HHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIK---------VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~---------~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....+.+. .+...+.+.+|. +.++++||++..|+.+
T Consensus 125 ~~~~~~l~~~~~~~Vt~~~g~~lA~~iga----~~y~EcSa~tq~~v~~ 169 (198)
T KOG0393|consen 125 PSTLEKLQRQGLEPVTYEQGLELAKEIGA----VKYLECSALTQKGVKE 169 (198)
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhCc----ceeeeehhhhhCCcHH
Confidence 22222222 344455555664 4689999999999876
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.96 E-value=1.4e-09 Score=106.12 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=56.8
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
+..++||+|.|..... .......+..+.|+|+..+.. .+. ......+.+ .++++||+|+.....
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~--------~~~----~~~~~~~~a-~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD--------KPL----KYPGMFKEA-DLIVINKADLAEAVG 165 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc--------hhh----hhHhHHhhC-CEEEEEHHHccccch
Confidence 4579999999931111 111123566778999876521 111 111223444 799999999985322
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....++.+.++.+ . ...+++++||++|+|+.+
T Consensus 166 ~~~~~~~~~l~~~----~---~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 166 FDVEKMKADAKKI----N---PEAEIILMSLKTGEGLDE 197 (207)
T ss_pred hhHHHHHHHHHHh----C---CCCCEEEEECCCCCCHHH
Confidence 3333444444432 2 235789999999999985
No 302
>PTZ00258 GTP-binding protein; Provisional
Probab=98.93 E-value=1e-08 Score=108.97 Aligned_cols=92 Identities=16% Similarity=0.029 Sum_probs=55.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEE-------
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV------- 336 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~------- 336 (536)
...++|+|||.||+|||||+|+|++....+... ..++.++..|+..-...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~-----------------------pftTi~p~~g~v~~~d~r~~~l~~ 75 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENF-----------------------PFCTIDPNTARVNVPDERFDWLCK 75 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCC-----------------------CCCcccceEEEEecccchhhHHHH
Confidence 345789999999999999999998654332221 11122222222100000
Q ss_pred --EEeecCCeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecC
Q 009378 337 --AYFDSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (536)
Q Consensus 337 --~~~~~~~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas 378 (536)
........++.|+||||... +....+..++.+|++|+|||+.
T Consensus 76 ~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 76 HFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 00001134589999999432 3345567788999999999985
No 303
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.92 E-value=3.2e-09 Score=94.38 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=88.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|++||.+|+|||||++.|.+........ .. +++.. =
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKT-------------------------------QA---------ve~~d--~ 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKT-------------------------------QA---------VEFND--K 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccc-------------------------------ce---------eeccC--c
Confidence 369999999999999999998543221110 11 11111 1
Q ss_pred EEEeCCC----cccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 347 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 347 ~LIDTPG----h~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
-.||||| |..+....+..+..+|++++|-.++++... | --.++ ..+.+++|-|++|+|+.. .
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~--f---------~p~f~-~~~~k~vIgvVTK~DLae--d 105 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESR--F---------PPGFL-DIGVKKVIGVVTKADLAE--D 105 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcccc--C---------Ccccc-cccccceEEEEecccccc--h
Confidence 2489999 666767777778889999999999876211 1 11112 233445999999999983 2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+ +..+++|...|.. ++|.+|+....|+.+
T Consensus 106 ~dI----~~~~~~L~eaGa~----~IF~~s~~d~~gv~~ 136 (148)
T COG4917 106 ADI----SLVKRWLREAGAE----PIFETSAVDNQGVEE 136 (148)
T ss_pred HhH----HHHHHHHHHcCCc----ceEEEeccCcccHHH
Confidence 232 4556677777742 579999999999986
No 304
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.91 E-value=3.9e-09 Score=108.93 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=57.8
Q ss_pred cCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 341 ~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
..++.++||||||.... ....+..+|.++++.....+ ........- ...++ .+||+||+|+...
T Consensus 124 ~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~----------~el~~~~~~--l~~~~-~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG----------DDLQGIKAG--LMEIA-DIYVVNKADGEGA 187 (300)
T ss_pred hCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc----------HHHHHHHHH--Hhhhc-cEEEEEcccccch
Confidence 35789999999995422 22345668998888665433 111111111 13455 7999999999853
Q ss_pred chhHHHHHHHH----HHHHHHH-cCCCCCCccEEEEEcccCCCccc
Q 009378 421 SKDRFDSIKVQ----LGTFLRS-CGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 421 ~~e~~eei~~~----L~~~l~~-~g~~~~~i~vipvSA~~GenI~e 461 (536)
.. ...+... +..+.+. .++ ..+++++||++|+|+.+
T Consensus 188 ~~--~~~~~~~~~~~l~~l~~~~~~~---~~~v~~iSA~~g~Gi~~ 228 (300)
T TIGR00750 188 TN--VTIARLMLALALEEIRRREDGW---RPPVLTTSAVEGRGIDE 228 (300)
T ss_pred hH--HHHHHHHHHHHHhhccccccCC---CCCEEEEEccCCCCHHH
Confidence 21 1111211 1222111 122 23689999999999986
No 305
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.89 E-value=6.7e-09 Score=101.03 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=58.2
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
...++||+|.|.. ...... ...+|.+|+|+|+..+.. ..... ..++..- =++++||+|+.....
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~---------~~~~~---~~qi~~a-d~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDK---------IPRKG---GPGITRS-DLLVINKIDLAPMVG 154 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhh---------hhhhh---HhHhhhc-cEEEEEhhhcccccc
Confidence 5678999999931 111111 112688999999987521 11111 1122111 279999999985323
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..++.+.+.++.+ + ...+++++||++|+|+.+
T Consensus 155 ~~~~~~~~~~~~~----~---~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 155 ADLGVMERDAKKM----R---GEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred ccHHHHHHHHHHh----C---CCCCEEEEECCCCCCHHH
Confidence 4455555555554 2 235789999999999986
No 306
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.88 E-value=1.8e-08 Score=106.14 Aligned_cols=89 Identities=19% Similarity=0.152 Sum_probs=54.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEE------Ee-
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA------YF- 339 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~------~~- 339 (536)
++|+|||.+|+|||||+|+|++....+... ..++.++..|+..-.... .+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny-----------------------pftTi~p~~G~~~v~d~r~~~l~~~~~ 59 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY-----------------------PFCTIEPNVGVVPVPDPRLDKLAEIVK 59 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc-----------------------ccccccceEEEEEeccccchhhHHhcC
Confidence 689999999999999999999755322211 111222222221100000 00
Q ss_pred --ecCCeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecC
Q 009378 340 --DSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (536)
Q Consensus 340 --~~~~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas 378 (536)
..-...+.|+|+||... +....+..++.+|++|+|||+.
T Consensus 60 p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 60 PKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 00113589999999432 3345566788999999999985
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.87 E-value=2.5e-08 Score=102.07 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=82.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec--CC
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~ 343 (536)
.++|.|+|..|+|||||||.|+........... ........+...+......+.. -.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSI---------------------PPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccc---------------------cccccccccccceeeEEEEeccCCcc
Confidence 589999999999999999999965332221100 0000011122223322222332 24
Q ss_pred eEEEEEeCCCcccchhh-------------H--------hhh----c--ccCCeEEEEeecCCCcccccccchhhHHHHH
Q 009378 344 YHVVVLDSPGHKDFVPN-------------M--------ISG----A--TQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~-------------~--------~~~----l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~ 396 (536)
..++||||||..+.+.+ . ... + ..+|++||+|..+.. ++.....+.
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-------~L~~~Di~~ 135 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-------GLKPLDIEF 135 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-------SS-HHHHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-------cchHHHHHH
Confidence 57889999994431111 0 000 0 227999999998632 144555555
Q ss_pred HHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCC
Q 009378 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (536)
Q Consensus 397 l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (536)
+..+... ++ +|-||.|.|.. ..+.+..+++.+...++..++
T Consensus 136 mk~Ls~~-vN-vIPvIaKaD~l--t~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 136 MKRLSKR-VN-VIPVIAKADTL--TPEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp HHHHTTT-SE-EEEEESTGGGS---HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhccc-cc-EEeEEeccccc--CHHHHHHHHHHHHHHHHHcCc
Confidence 5544332 44 99999999998 578888889999999988776
No 308
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.86 E-value=1.1e-08 Score=102.21 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=49.4
Q ss_pred CCeEEEEEeCCCccc-------------chhhHhhhccc-CCeEEEEeecCCCcccccccchhhHH-HHHHHHHHHcCCC
Q 009378 342 KNYHVVVLDSPGHKD-------------FVPNMISGATQ-SDAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVD 406 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d-------------f~~~~~~~l~~-aD~~ILVVDas~g~~e~~~~~~~~qt-~e~l~ll~~~~vp 406 (536)
....++||||||... ....+..++.. .+++|+|+|+..+ +..+. .++...+...+.+
T Consensus 123 ~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d--------~~~~d~l~ia~~ld~~~~r 194 (240)
T smart00053 123 HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD--------LANSDALKLAKEVDPQGER 194 (240)
T ss_pred CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCC--------CCchhHHHHHHHHHHcCCc
Confidence 347899999999632 11234455663 5699999999876 23333 4666667677776
Q ss_pred cEEEEEecccccccc
Q 009378 407 QLIVAVNKMDAVQYS 421 (536)
Q Consensus 407 ~vIVVINKiDl~~~~ 421 (536)
+|+|+||+|.....
T Consensus 195 -ti~ViTK~D~~~~~ 208 (240)
T smart00053 195 -TIGVITKLDLMDEG 208 (240)
T ss_pred -EEEEEECCCCCCcc
Confidence 99999999998543
No 309
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.86 E-value=7.8e-09 Score=104.66 Aligned_cols=175 Identities=18% Similarity=0.249 Sum_probs=94.7
Q ss_pred CcCCCcceeEEEEEecCCCCchhhhhhhhhccc-------ccccchhhhhHHHHhhhCCCccchhccccccccccccceE
Q 009378 259 KKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLG-------RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 331 (536)
Q Consensus 259 ~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~-------~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiT 331 (536)
.....-+...|+|.|.||+|||||+.+|..... .+.-++-..+..+++..++ +.|..+.. .+++-
T Consensus 44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR------iRM~~~~~--~~~vF 115 (323)
T COG1703 44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR------IRMQRLAV--DPGVF 115 (323)
T ss_pred HhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH------hhHHhhcc--CCCeE
Confidence 334456678999999999999999999974321 1111110001111111111 12222111 11111
Q ss_pred EEE----------E------EEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHH
Q 009378 332 MTV----------A------VAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (536)
Q Consensus 332 i~~----------~------~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e 395 (536)
+.. . ..-++--++.++||.|-|.-.--- .-...+|.+|+|.-...|. .++....-
T Consensus 116 iRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD------~~Q~iK~G 186 (323)
T COG1703 116 IRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGD------DLQGIKAG 186 (323)
T ss_pred EeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCc------HHHHHHhh
Confidence 100 0 001223468899999999432211 1223489999998777662 23444444
Q ss_pred HHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHH---HHHcCCCCCCccEEEEEcccCCCccc
Q 009378 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 396 ~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~---l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
++++. =|+||||+|+... +..+.++...+... ....+|. .+++.+||.+|+|+.+
T Consensus 187 imEia-------Di~vINKaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~---ppv~~t~A~~g~Gi~~ 244 (323)
T COG1703 187 IMEIA-------DIIVINKADRKGA-EKAARELRSALDLLREVWRENGWR---PPVVTTSALEGEGIDE 244 (323)
T ss_pred hhhhh-------heeeEeccChhhH-HHHHHHHHHHHHhhcccccccCCC---CceeEeeeccCCCHHH
Confidence 44444 2799999996643 33344444444433 2333443 3789999999999986
No 310
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.85 E-value=6.1e-09 Score=104.07 Aligned_cols=169 Identities=20% Similarity=0.268 Sum_probs=86.6
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccc-------cccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEE
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGR-------ITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV 336 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~-------i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~ 336 (536)
.+...|+|.|+||+|||||+++|...... +.-++...+..++...++ ..|..+. ...++-+....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDR------iRM~~~~--~d~~vfIRS~a 98 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDR------IRMQELS--RDPGVFIRSMA 98 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--G------GGCHHHH--TSTTEEEEEE-
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccH------HHhcCcC--CCCCEEEeecC
Confidence 35678999999999999999999743211 111111111112222211 1222211 12333221111
Q ss_pred E----------------EeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH
Q 009378 337 A----------------YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI 400 (536)
Q Consensus 337 ~----------------~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll 400 (536)
. .++.-++.++||.|.|.-.-- ..-...+|.+|+|+-...|.. ++.....++++.
T Consensus 99 tRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~------iQ~~KaGimEia 169 (266)
T PF03308_consen 99 TRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDE------IQAIKAGIMEIA 169 (266)
T ss_dssp --SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCC------CCTB-TTHHHH-
T ss_pred cCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccH------HHHHhhhhhhhc
Confidence 0 012246889999999943221 122355999999999887742 333333344433
Q ss_pred HHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCC--CccEEEEEcccCCCccc
Q 009378 401 RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVT 461 (536)
Q Consensus 401 ~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~--~i~vipvSA~~GenI~e 461 (536)
=|+|+||.|+... +....+++..+....-... ..|++.+||.+|+||.+
T Consensus 170 -------Di~vVNKaD~~gA-----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~e 220 (266)
T PF03308_consen 170 -------DIFVVNKADRPGA-----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDE 220 (266)
T ss_dssp -------SEEEEE--SHHHH-----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHH
T ss_pred -------cEEEEeCCChHHH-----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHH
Confidence 2899999996542 2334445555543221111 24899999999999986
No 311
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.82 E-value=7.8e-08 Score=101.72 Aligned_cols=136 Identities=17% Similarity=0.244 Sum_probs=81.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccc---eEEEEEE-----
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG---ITMTVAV----- 336 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~G---iTi~~~~----- 336 (536)
-.+-|+|+|++++|||||+|+|++....+........++.. |.... ...| +|++..+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~--------------DELpq-s~~GktItTTePkfvP~kA 80 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQ--------------DELPQ-SAAGKTIMTTEPKFVPNEA 80 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHH--------------hccCc-CCCCCCcccCCCccccCcc
Confidence 35789999999999999999999875544332211111111 11110 1133 2222222
Q ss_pred ---EEeecCCeEEEEEeCCCccc-------------------------chhh----Hhhhcc-cCCeEEEEe-ecCCCcc
Q 009378 337 ---AYFDSKNYHVVVLDSPGHKD-------------------------FVPN----MISGAT-QSDAAILVI-DASVGSF 382 (536)
Q Consensus 337 ---~~~~~~~~~i~LIDTPGh~d-------------------------f~~~----~~~~l~-~aD~~ILVV-Das~g~~ 382 (536)
...+.-...+.||||+|..+ |... +...+. .+|++|+|. |++-+
T Consensus 81 vEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~-- 158 (492)
T TIGR02836 81 VEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTIT-- 158 (492)
T ss_pred eEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcc--
Confidence 11222346899999999221 1111 233345 699999998 77522
Q ss_pred cccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 383 EVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 383 e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.-..+.........+..+++.++| +|+|+||.|-.
T Consensus 159 dI~Re~y~~aEe~~i~eLk~~~kP-fiivlN~~dp~ 193 (492)
T TIGR02836 159 DIPREDYVEAEERVIEELKELNKP-FIILLNSTHPY 193 (492)
T ss_pred ccccccchHHHHHHHHHHHhcCCC-EEEEEECcCCC
Confidence 111222456777888899999998 99999999943
No 312
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.82 E-value=5.5e-09 Score=106.28 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=94.0
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
....|++||..|+||||||++|+........+.+.+ +|.+ ...+ .+ ..+.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFAT------------------LDpT---------~h~a--~L-psg~ 226 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFAT------------------LDPT---------LHSA--HL-PSGN 226 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhhee------------------ccch---------hhhc--cC-CCCc
Confidence 346799999999999999999995444443333221 1111 0000 01 1456
Q ss_pred EEEEEeCCCcccch--------hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCc------EEE
Q 009378 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ------LIV 410 (536)
Q Consensus 345 ~i~LIDTPGh~df~--------~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~------vIV 410 (536)
.+.|.||-|+..-. ..++..+..+|++|.|+|.+++. +..|....+..++++++|+ +|=
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~-------ae~q~e~Vl~vL~~igv~~~pkl~~mie 299 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPN-------AEEQRETVLHVLNQIGVPSEPKLQNMIE 299 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCcc-------HHHHHHHHHHHHHhcCCCcHHHHhHHHh
Confidence 68899999954322 22344456699999999999985 5678888889999999962 566
Q ss_pred EEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 411 VINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|=||+|....-.+. .++ ..+++||++|+|+.+
T Consensus 300 VdnkiD~e~~~~e~------------------E~n-~~v~isaltgdgl~e 331 (410)
T KOG0410|consen 300 VDNKIDYEEDEVEE------------------EKN-LDVGISALTGDGLEE 331 (410)
T ss_pred hccccccccccCcc------------------ccC-CccccccccCccHHH
Confidence 77888876321100 011 249999999999986
No 313
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=1.5e-09 Score=101.72 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=96.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
...-++++|+|..++||||+|.+++. |..+... +. .+..+.+. +.+ .+...
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCk--gifTkdy------------kk----tIgvdfle----rqi-------~v~~E 67 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKDY------------KK----TIGVDFLE----RQI-------KVLIE 67 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhc--ccccccc------------cc----ccchhhhh----HHH-------HhhHH
Confidence 35679999999999999999999982 2221110 00 01111111 000 12234
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc-CCCcEEEEEecccccccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~-~vp~vIVVINKiDl~~~~ 421 (536)
...+.+|||+|+++|-..+..+++.|.+.|||+..+... .+.....+.-....+. .+| .++|-||+|++..+
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~------SFea~~~w~~kv~~e~~~IP-tV~vqNKIDlveds 140 (246)
T KOG4252|consen 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRY------SFEATLEWYNKVQKETERIP-TVFVQNKIDLVEDS 140 (246)
T ss_pred HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHH------HHHHHHHHHHHHHHHhccCC-eEEeeccchhhHhh
Confidence 556779999999999999999999999999999988541 1222222222333333 456 89999999999643
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.-.-.+. ..+.+.+.. .++-+|++...|+.+
T Consensus 141 ~~~~~ev----E~lak~l~~-----RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 141 QMDKGEV----EGLAKKLHK-----RLYRTSVKEDFNVMH 171 (246)
T ss_pred hcchHHH----HHHHHHhhh-----hhhhhhhhhhhhhHH
Confidence 3222222 222222222 458899999999875
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.80 E-value=4.6e-09 Score=100.49 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=59.9
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCC-eEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD-~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~ 422 (536)
..+.||.+.| ...... .....| +-|+|||+.+|.....-... ..++ .=++||||.|++.+-.
T Consensus 97 ~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP-~i~~------------aDllVInK~DLa~~v~ 159 (202)
T COG0378 97 LDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGP-GIFK------------ADLLVINKTDLAPYVG 159 (202)
T ss_pred CCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCC-ceeE------------eeEEEEehHHhHHHhC
Confidence 6799999999 222111 111244 89999999998422110000 0000 0289999999997655
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..++.+.+..+++ .+..+||.+|+++|+|+.+
T Consensus 160 ~dlevm~~da~~~-------np~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 160 ADLEVMARDAKEV-------NPEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred ccHHHHHHHHHHh-------CCCCCEEEEeCCCCcCHHH
Confidence 5556666666655 2456899999999999975
No 315
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.76 E-value=1.7e-08 Score=109.44 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=101.2
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
..++.+||+|+|..|+|||+||-.|+.......- + .+-.-|++- ..+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~V---------------------------P-~rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV---------------------------P-RRLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccc---------------------------c-ccCCccccC---CccCc
Confidence 4567899999999999999999999854321100 0 011122221 11223
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC-----CCcEEEEEeccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-----VDQLIVAVNKMD 416 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~-----vp~vIVVINKiD 416 (536)
......|+||+-..+-.......+++||++.+|.++++..+ +......++.++++.. +| ||+|.||+|
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T------~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d 126 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST------VDRISTKWLPLIRQLFGDYHETP-VILVGNKSD 126 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH------hhhhhhhhhhhhhcccCCCccCC-EEEEeeccC
Confidence 45558999999877766677788899999999999886422 3445556667777765 45 999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.........+....-+...++... ..|.|||++-.|+.+
T Consensus 127 ~~~~~~~s~e~~~~pim~~f~EiE------tciecSA~~~~n~~e 165 (625)
T KOG1707|consen 127 NGDNENNSDEVNTLPIMIAFAEIE------TCIECSALTLANVSE 165 (625)
T ss_pred CccccccchhHHHHHHHHHhHHHH------HHHhhhhhhhhhhHh
Confidence 986544433331112222222221 348899999888876
No 316
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.73 E-value=1.8e-08 Score=100.88 Aligned_cols=158 Identities=20% Similarity=0.173 Sum_probs=101.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (536)
..+.+.++++|..|+|||+|||.++...... ..+ ....|-|..+.+.. -
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~-------------~t~---------------k~K~g~Tq~in~f~---v 181 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIA-------------DTS---------------KSKNGKTQAINHFH---V 181 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhh-------------hhc---------------CCCCccceeeeeee---c
Confidence 3567899999999999999999998432211 000 11345555554443 4
Q ss_pred CeEEEEEeCCC----------cccchhhHhhhc---ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEE
Q 009378 343 NYHVVVLDSPG----------HKDFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (536)
Q Consensus 343 ~~~i~LIDTPG----------h~df~~~~~~~l---~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vI 409 (536)
+..+.++|.|| -.++...+..++ .+-=.+.|++|+..+ ++......+.++.+.++| +.
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~--------i~~~D~~~i~~~ge~~VP-~t 252 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP--------IQPTDNPEIAWLGENNVP-MT 252 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC--------CCCCChHHHHHHhhcCCC-eE
Confidence 56799999999 122333333332 234456778899877 456677788899999999 99
Q ss_pred EEEecccccccch----hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009378 410 VAVNKMDAVQYSK----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 410 VVINKiDl~~~~~----e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
+|+||||+...-. .....++..+..+.+. +-....||+.+|+.++.|++++
T Consensus 253 ~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~--~f~~~~Pw~~~Ssvt~~Grd~L 307 (320)
T KOG2486|consen 253 SVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG--VFLVDLPWIYVSSVTSLGRDLL 307 (320)
T ss_pred EeeehhhhhhhccccccCccccceeehhhcccc--ceeccCCceeeecccccCceee
Confidence 9999999864211 1111222222332221 1223458999999999999874
No 317
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.72 E-value=2.7e-08 Score=106.08 Aligned_cols=158 Identities=19% Similarity=0.250 Sum_probs=96.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.....+.|+|.+|+|||+|++.++.....+... .-+|..+...++++.-
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpY-------------------------------aFTTksL~vGH~dykY 214 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPY-------------------------------AFTTKLLLVGHLDYKY 214 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCc-------------------------------ccccchhhhhhhhhhe
Confidence 455789999999999999999988433222111 1122233334466666
Q ss_pred eEEEEEeCCCcccc------hhhH--hhhccc-CCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009378 344 YHVVVLDSPGHKDF------VPNM--ISGATQ-SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 344 ~~i~LIDTPGh~df------~~~~--~~~l~~-aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
..+++|||||.-+- +-+| +.++.. --++||++|.+.- +|. .+..|.+-...+-..+..+++|+|+||
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~---CGy-Sva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM---CGY-SVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh---hCC-CHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 78999999994331 2222 222222 3468899998742 222 233344333333333444459999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009378 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
+|+.. .+.+.+-.+++.+.+...+ +++++.+|..+.+|+.+.
T Consensus 291 ~D~m~--~edL~~~~~~ll~~~~~~~----~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 291 IDAMR--PEDLDQKNQELLQTIIDDG----NVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred ccccC--ccccCHHHHHHHHHHHhcc----CceEEEecccchhceeeH
Confidence 99984 3333334444444444443 468999999999999763
No 318
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=2.5e-08 Score=97.37 Aligned_cols=151 Identities=20% Similarity=0.244 Sum_probs=101.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec-CCe
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 344 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 344 (536)
..+|.++|..|+|||+|=..+++...+. ..+..|-|+++.+.+..+ ++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~------------------------------D~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR------------------------------DTRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh------------------------------hhhccCCcceeeehhhhhhhhh
Confidence 4679999999999999988777432111 112356677777776655 457
Q ss_pred EEEEEeCCCcccchhhHhh-----hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC-CCcEEEEEeccccc
Q 009378 345 HVVVLDSPGHKDFVPNMIS-----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAV 418 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~-----~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~-vp~vIVVINKiDl~ 418 (536)
.+.+||+.|++.|..+... ..+..+++|+|+|+....++.+++ ..+..++.+.+.. .-++++.+.|+|++
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~----~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH----YYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH----HHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 8999999999988877655 356699999999999776555543 3344444444432 22489999999998
Q ss_pred ccc--hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEccc
Q 009378 419 QYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (536)
Q Consensus 419 ~~~--~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~ 455 (536)
..+ +..+++-.+.+..+-+.++ ...+|+|.+.
T Consensus 130 ~~d~r~~if~~r~~~l~~~s~~~~-----~~~f~TsiwD 163 (295)
T KOG3886|consen 130 QEDARELIFQRRKEDLRRLSRPLE-----CKCFPTSIWD 163 (295)
T ss_pred ccchHHHHHHHHHHHHHHhccccc-----ccccccchhh
Confidence 533 3445555555555444333 3567777664
No 319
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1e-07 Score=88.76 Aligned_cols=156 Identities=15% Similarity=0.061 Sum_probs=96.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
++.-+++++|--|||||||++.|-...- .++.. |.......+...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl----------------------------~qhvP------TlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL----------------------------GQHVP------TLHPTSEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc----------------------------cccCC------CcCCChHHheecC
Confidence 5567899999999999999998862211 11100 0011111244577
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH----HcCCCcEEEEEecccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQ 419 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~----~~~vp~vIVVINKiDl~~ 419 (536)
..++-+|..||..-..-+..++..+|++|++|||-... .+ ...++++..+. ...+| ++|..||+|...
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~e------r~-~es~~eld~ll~~e~la~vp-~lilgnKId~p~ 135 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQE------RF-AESKKELDALLSDESLATVP-FLILGNKIDIPY 135 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHH------Hh-HHHHHHHHHHHhHHHHhcCc-ceeecccccCCC
Confidence 88999999999988888888889999999999998642 12 22233332222 24566 899999999986
Q ss_pred cchhHHHHHHHHHHHHHHHc------CCCCCCccEEEEEcccCCCccc
Q 009378 420 YSKDRFDSIKVQLGTFLRSC------GFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~------g~~~~~i~vipvSA~~GenI~e 461 (536)
+..+.--.....+....-.. +.....+.++.||...+.|..+
T Consensus 136 a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e 183 (193)
T KOG0077|consen 136 AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGE 183 (193)
T ss_pred cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccce
Confidence 53222111222222222111 1112345678888888887654
No 320
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.68 E-value=2.1e-07 Score=85.65 Aligned_cols=155 Identities=14% Similarity=0.196 Sum_probs=112.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.-.++|.++|.+-.|||||+-...+.... ...++..|+...-...++....
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~d-----------------------------e~~~q~~GvN~mdkt~~i~~t~ 68 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYD-----------------------------EEYTQTLGVNFMDKTVSIRGTD 68 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhH-----------------------------HHHHHHhCccceeeEEEecceE
Confidence 34689999999999999998877732110 1112334554444444555556
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC---CCcEEEEEeccccc-c
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---VDQLIVAVNKMDAV-Q 419 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~---vp~vIVVINKiDl~-~ 419 (536)
..+.|||..|+++|....--+...+-++||++|.+.... ..-.++..++++.++ +| |+|.+|.|.. .
T Consensus 69 IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T-------LnSi~~WY~QAr~~NktAiP--ilvGTKyD~fi~ 139 (205)
T KOG1673|consen 69 ISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST-------LNSIKEWYRQARGLNKTAIP--ILVGTKYDLFID 139 (205)
T ss_pred EEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH-------HHHHHHHHHHHhccCCccce--EEeccchHhhhc
Confidence 678899999999998888777788899999999987531 234456666666654 34 8999999964 3
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+++..+.|..+.+.+.+-.+. +.|.+|+-+..|+.+
T Consensus 140 lp~e~Q~~I~~qar~YAk~mnA-----sL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 140 LPPELQETISRQARKYAKVMNA-----SLFFCSTSHSINVQK 176 (205)
T ss_pred CCHHHHHHHHHHHHHHHHHhCC-----cEEEeeccccccHHH
Confidence 4556667788888888877765 679999999999976
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.66 E-value=7.8e-08 Score=98.32 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=55.1
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
....+.||++.|.-..... .-+ ..+.-|.|+++..|... .. + .- ..+... -|||+||+|++.+.
T Consensus 183 ~~~d~liIEnvGnLvcPa~--fdl-ge~~~v~vlsV~eg~dk-------pl-K-yp---~~f~~A-DIVVLNKiDLl~~~ 246 (290)
T PRK10463 183 DDNGILFIENVGNLVCPAS--FDL-GEKHKVAVLSVTEGEDK-------PL-K-YP---HMFAAA-SLMLLNKVDLLPYL 246 (290)
T ss_pred cCCcEEEEECCCCccCCCc--cch-hhceeEEEEECcccccc-------ch-h-cc---chhhcC-cEEEEEhHHcCccc
Confidence 4457889999984111110 011 12344677788766210 00 1 10 112233 58999999998543
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...++.+.+.++.+. +..++|++||++|+|+++
T Consensus 247 ~~dle~~~~~lr~ln-------p~a~I~~vSA~tGeGld~ 279 (290)
T PRK10463 247 NFDVEKCIACAREVN-------PEIEIILISATSGEGMDQ 279 (290)
T ss_pred HHHHHHHHHHHHhhC-------CCCcEEEEECCCCCCHHH
Confidence 334444555444432 245789999999999975
No 322
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=2.8e-07 Score=90.56 Aligned_cols=142 Identities=19% Similarity=0.269 Sum_probs=85.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhcccccccccccc-ceEEEEEEEEeecC--
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER-GITMTVAVAYFDSK-- 342 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~-GiTi~~~~~~~~~~-- 342 (536)
.+||.|||..|.|||||+|.|+.....-.. ..+. ..++.+ .+.+......++.+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s----------------------~~~~-~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSS----------------------SSDN-SAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhcc----------------------CCCc-ccCcccceEEEEeeeeeeeecce
Confidence 589999999999999999999843211100 0011 111111 12222222223333
Q ss_pred CeEEEEEeCCCcccc---------------------hhhHhhhc-------ccCCeEEEEeecCCCcccccccchhhHHH
Q 009378 343 NYHVVVLDSPGHKDF---------------------VPNMISGA-------TQSDAAILVIDASVGSFEVGMNTAKGLTR 394 (536)
Q Consensus 343 ~~~i~LIDTPGh~df---------------------~~~~~~~l-------~~aD~~ILVVDas~g~~e~~~~~~~~qt~ 394 (536)
..++++|||||..++ +..-+... ...+++||.|..+-- .+.+...
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-------sLrplDi 175 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-------SLRPLDI 175 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-------ccCcccH
Confidence 357889999994442 22211111 127899999988742 2556666
Q ss_pred HHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCC
Q 009378 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (536)
Q Consensus 395 e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (536)
+.+..+.+. -.+|-||-|.|.+ .-+...++++.++.-|...++
T Consensus 176 eflkrLt~v--vNvvPVIakaDtl--TleEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 176 EFLKRLTEV--VNVVPVIAKADTL--TLEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHhhh--heeeeeEeecccc--cHHHHHHHHHHHHHHHHhcCc
Confidence 766655443 2378899999987 445556677888888877776
No 323
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.4e-07 Score=89.65 Aligned_cols=151 Identities=23% Similarity=0.250 Sum_probs=101.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++++++|..+.||||++++.+- +. ...+....-|+........-..+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~lt--ge---------------------------Fe~~y~at~Gv~~~pl~f~tn~g~ 58 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLT--GE---------------------------FEKTYPATLGVEVHPLLFDTNRGQ 58 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhc--cc---------------------------ceecccCcceeEEeeeeeecccCc
Confidence 4578999999999999999999871 11 111122233443333333323345
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC-CCcEEEEEecccccccch
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSK 422 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~-vp~vIVVINKiDl~~~~~ 422 (536)
..|..|||.|++.+....-.++-+..++|+++|...... +....++|-.+++..+ +| |+++.||.|.... .
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t------~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r-~ 130 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT------YKNVPRWHRDLVRVRENIP-IVLCGNKVDIKAR-K 130 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhh------hhcchHHHHHHHHHhcCCC-eeeeccceecccc-c
Confidence 889999999999999888888888999999999986543 2334455555665554 46 9999999997632 1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
++..--.+. ...++.++.+||+.+-|...
T Consensus 131 -----~k~k~v~~~-----rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 131 -----VKAKPVSFH-----RKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred -----cccccceee-----ecccceeEEeeccccccccc
Confidence 111111111 12356889999999999876
No 324
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.63 E-value=2.6e-07 Score=102.72 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=69.3
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
-.++|+|+|.+|+|||||+|.|++........ ...++| ..........+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss-----------------------------~~~~TT-r~~ei~~~idG~ 166 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDA-----------------------------FGMGTT-SVQEIEGLVQGV 166 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccC-----------------------------CCCCce-EEEEEEEEECCc
Confidence 35789999999999999999999654222110 012222 222222334678
Q ss_pred EEEEEeCCCcccch------hh----Hhhhcc--cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cC---CCcE
Q 009378 345 HVVVLDSPGHKDFV------PN----MISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQL 408 (536)
Q Consensus 345 ~i~LIDTPGh~df~------~~----~~~~l~--~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~---vp~v 408 (536)
.+.||||||..+.. .. ....+. .+|++|||+...... ........+..+.. +| ..++
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~-------~D~eD~~aLr~Iq~lFG~~Iwk~t 239 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQT-------RDSNDLPLLRTITDVLGPSIWFNA 239 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcc-------ccHHHHHHHHHHHHHhCHHhHcCE
Confidence 89999999955421 11 112222 489999998654221 00122223333322 22 2469
Q ss_pred EEEEecccccc
Q 009378 409 IVAVNKMDAVQ 419 (536)
Q Consensus 409 IVVINKiDl~~ 419 (536)
|||+|..|.+.
T Consensus 240 IVVFThgD~lp 250 (763)
T TIGR00993 240 IVTLTHAASAP 250 (763)
T ss_pred EEEEeCCccCC
Confidence 99999999885
No 325
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.2e-07 Score=95.81 Aligned_cols=91 Identities=22% Similarity=0.202 Sum_probs=59.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEE------e
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY------F 339 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~------~ 339 (536)
.++++|||-||+|||||+|+|+.....+... ...+.+++.|+..-..... .
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNY-----------------------PF~TIePN~Giv~v~d~rl~~L~~~~ 58 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANY-----------------------PFCTIEPNVGVVYVPDCRLDELAEIV 58 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCC-----------------------CcccccCCeeEEecCchHHHHHHHhc
Confidence 4689999999999999999999655433332 3334445555432111000 0
Q ss_pred e----cCCeEEEEEeCCCcc-------cchhhHhhhcccCCeEEEEeecCC
Q 009378 340 D----SKNYHVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 340 ~----~~~~~i~LIDTPGh~-------df~~~~~~~l~~aD~~ILVVDas~ 379 (536)
. .--..+.|+|.+|.. -+-...+..++++|+++.||++..
T Consensus 59 ~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 59 KCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 0 012358899999932 245566778899999999999984
No 326
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.2e-07 Score=101.22 Aligned_cols=181 Identities=18% Similarity=0.163 Sum_probs=99.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHh--hhCCCccchhccccc-------------ccccccc
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAK--LQGKGSFAYAWALDE-------------SAEERER 328 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~--~~gkgs~~~~~~~d~-------------~~~e~~~ 328 (536)
....+|+|.|.+++||||++|++++....+......+.....+ .+|...+...-.... ...+...
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4567899999999999999999998876654433222111111 122222211111000 0000000
Q ss_pred ceEEEEEEEEeecC-----CeEEEEEeCCCc---ccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH
Q 009378 329 GITMTVAVAYFDSK-----NYHVVVLDSPGH---KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI 400 (536)
Q Consensus 329 GiTi~~~~~~~~~~-----~~~i~LIDTPGh---~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll 400 (536)
|- -....++...+ ...+.++|.||. ..+..........+|++|||+.|..- +....+..+..+
T Consensus 187 ~~-~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--------lt~sek~Ff~~v 257 (749)
T KOG0448|consen 187 GA-GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--------LTLSEKQFFHKV 257 (749)
T ss_pred Cc-ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--------hHHHHHHHHHHh
Confidence 00 00111111111 236899999993 34555555666779999999998753 222222222222
Q ss_pred HHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEccc
Q 009378 401 RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (536)
Q Consensus 401 ~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~ 455 (536)
. .+.|.|+|+.||+|....-++..+.++.++.. |.-..+....-.++.|||+.
T Consensus 258 s-~~KpniFIlnnkwDasase~ec~e~V~~Qi~e-L~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 258 S-EEKPNIFILNNKWDASASEPECKEDVLKQIHE-LSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred h-ccCCcEEEEechhhhhcccHHHHHHHHHHHHh-cCcccHhhhcCeeEEEeccc
Confidence 2 34677999999999886555666667766552 22222333344679999664
No 327
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.55 E-value=1.1e-06 Score=87.10 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=59.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.-+|+++|-|.+|||||+..++...... ....+++..-.+|+ +.+++..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~Sea-----------------------A~yeFTTLtcIpGv--------i~y~ga~ 110 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEA-----------------------ASYEFTTLTCIPGV--------IHYNGAN 110 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhh-----------------------hceeeeEEEeecce--------EEecCce
Confidence 4789999999999999999998322111 11222333333443 6778999
Q ss_pred EEEEeCCCcccc-------hhhHhhhcccCCeEEEEeecCCC
Q 009378 346 VVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVG 380 (536)
Q Consensus 346 i~LIDTPGh~df-------~~~~~~~l~~aD~~ILVVDas~g 380 (536)
|.++|.||...- -...+..++.+|+++.|+||+..
T Consensus 111 IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 111 IQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred EEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 999999994332 33456667889999999999974
No 328
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.55 E-value=1.2e-06 Score=91.09 Aligned_cols=145 Identities=21% Similarity=0.308 Sum_probs=93.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccc-cccceEEEEEEEEeecC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVAVAYFDSK 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e-~~~GiTi~~~~~~~~~~ 342 (536)
.-.++|.++|..|.|||||+|.|++.... ... ..+..... ..+++.+......+..+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~-~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e~ 78 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLV-DET---------------------EIDDIRAEGTSPTLEIKITKAELEED 78 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhcc-CCC---------------------CccCcccccCCcceEEEeeeeeeecC
Confidence 45689999999999999999999965111 000 00111111 23445555555555444
Q ss_pred C--eEEEEEeCCCcccchhhH---------------------hhhc-------ccCCeEEEEeecCCCcccccccchhhH
Q 009378 343 N--YHVVVLDSPGHKDFVPNM---------------------ISGA-------TQSDAAILVIDASVGSFEVGMNTAKGL 392 (536)
Q Consensus 343 ~--~~i~LIDTPGh~df~~~~---------------------~~~l-------~~aD~~ILVVDas~g~~e~~~~~~~~q 392 (536)
+ ..+++|||||..+++.+. .... ..+|+|||.|-.+. +++...
T Consensus 79 ~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-------h~l~~~ 151 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-------HGLKPL 151 (373)
T ss_pred CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-------CCCCHH
Confidence 4 568899999965532221 1111 12799999998663 225566
Q ss_pred HHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCC
Q 009378 393 TREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (536)
Q Consensus 393 t~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (536)
..+.+..+... +. +|-||-|.|.. ..+.+..+++.+...+...++
T Consensus 152 DIe~Mk~ls~~-vN-lIPVI~KaD~l--T~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 152 DIEAMKRLSKR-VN-LIPVIAKADTL--TDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHHHhcc-cC-eeeeeeccccC--CHHHHHHHHHHHHHHHHHhCC
Confidence 66666544432 33 89999999998 667788888999998887765
No 329
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.48 E-value=1.6e-07 Score=95.82 Aligned_cols=86 Identities=21% Similarity=0.156 Sum_probs=51.5
Q ss_pred EEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEe---------
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--------- 339 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~--------- 339 (536)
|+|||.+|+|||||+|+|++....+.... ..+.++..|+..-.. ..+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~p-----------------------ftTi~p~~g~v~v~d-~r~~~l~~~~~~ 56 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYP-----------------------FCTIEPNVGIVPVPD-ERLDKLAEIVKP 56 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccccc-----------------------ccchhceeeeEEecc-chhhhHHHHhCC
Confidence 58999999999999999997554222211 112222222211000 000
Q ss_pred -ecCCeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecC
Q 009378 340 -DSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (536)
Q Consensus 340 -~~~~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas 378 (536)
..-...+.|+|+||... .....+..++.+|++|+|||+.
T Consensus 57 ~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 57 KKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 00113589999999432 3334566778899999999985
No 330
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.44 E-value=3.5e-06 Score=77.61 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=88.4
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEE-EEEEEEeec
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYFDS 341 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi-~~~~~~~~~ 341 (536)
..+.-+|+++|.-++|||.++..|++....+.... .+ |+ ++....+++
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~-----------------------------~p--TiEDiY~~svet 54 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL-----------------------------HP--TIEDIYVASVET 54 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCcc-----------------------------cc--chhhheeEeeec
Confidence 34567899999999999999999985433221110 00 11 112222332
Q ss_pred C---CeEEEEEeCCCcccchhhH-hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009378 342 K---NYHVVVLDSPGHKDFVPNM-ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 342 ~---~~~i~LIDTPGh~df~~~~-~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
+ ...+.|.||.|.......+ ..++..+|++|||++..... .|+.+....+++-..-....+| |+|+.||.|+
T Consensus 55 ~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e---Sf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr 130 (198)
T KOG3883|consen 55 DRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE---SFQRVELLKKEIDKHKDKKEVP-IVVLANKRDR 130 (198)
T ss_pred CCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH---HHHHHHHHHHHHhhcccccccc-EEEEechhhc
Confidence 2 3468899999987774444 34556699999999987642 1111111111111111112455 9999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
....... ......+.+ .+.+..+.++|.....+.+
T Consensus 131 ~~p~~vd----~d~A~~Wa~-----rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 131 AEPREVD----MDVAQIWAK-----REKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred ccchhcC----HHHHHHHHh-----hhheeEEEEEeccchhhhh
Confidence 7422111 111122221 2345679999998777655
No 331
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.34 E-value=3.8e-06 Score=87.55 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCcccchhh----H---hhh-----cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEE
Q 009378 342 KNYHVVVLDSPGHKDFVPN----M---ISG-----ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~----~---~~~-----l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vI 409 (536)
.++.++||||||....... + ... ...++..+||+|++.+. ........+....++ --
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~--~g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGL--TG 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCC--CE
Confidence 5678999999995432221 1 111 13478899999999761 112222223333444 36
Q ss_pred EEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009378 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 410 VVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
+|+||+|....-.. +... +...+ +|+.+++ +|++++++
T Consensus 264 iIlTKlD~t~~~G~----~l~~----~~~~~-----~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGTAKGGV----VFAI----ADELG-----IPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCCCCccH----HHHH----HHHHC-----CCEEEEe--CCCChhhC
Confidence 89999996532112 2222 22233 3778887 88888663
No 332
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=5.5e-06 Score=86.74 Aligned_cols=144 Identities=20% Similarity=0.299 Sum_probs=87.8
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC--
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 342 (536)
-.+++.++|..|.|||||||.|+.....-. +. ...........+++......++.+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~-~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~ 77 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGN-RE---------------------VPGASERIKETVEIESTKVEIEENGV 77 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCC-cc---------------------cCCcccCccccceeeeeeeeecCCCe
Confidence 358999999999999999999985411100 00 011111122233333333334433
Q ss_pred CeEEEEEeCCCcccchhhH--------------h-----------hhcc--cCCeEEEEeecCCCcccccccchhhHHHH
Q 009378 343 NYHVVVLDSPGHKDFVPNM--------------I-----------SGAT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~--------------~-----------~~l~--~aD~~ILVVDas~g~~e~~~~~~~~qt~e 395 (536)
..+++++||||..+++.+. . ..+. .++++||.|..+. +++.+...+
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-------hgL~p~Di~ 150 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-------HGLKPLDIE 150 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-------CCCcHhhHH
Confidence 3568899999955432111 0 0111 3899999998663 225566666
Q ss_pred HHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCC
Q 009378 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (536)
Q Consensus 396 ~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (536)
.+..+.. .+. +|-||-|.|.. ..+.+..++..+...+...++
T Consensus 151 ~Mk~l~~-~vN-iIPVI~KaD~l--T~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 151 FMKKLSK-KVN-LIPVIAKADTL--TKDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHhc-ccc-ccceeeccccC--CHHHHHHHHHHHHHHHHHcCc
Confidence 5554432 344 88999999998 566777788888888877665
No 333
>PRK14974 cell division protein FtsY; Provisional
Probab=98.32 E-value=2.3e-06 Score=89.74 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=54.4
Q ss_pred CCeEEEEEeCCCcccc----hhhHhh--hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 342 KNYHVVVLDSPGHKDF----VPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df----~~~~~~--~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.++.++||||+|.... ...+.. ....+|.++||+|+..|. ........+....++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---------d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---------DAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---------hHHHHHHHHHhcCCCC--EEEEeee
Confidence 3567999999995532 222211 123589999999998651 1111122223345554 6889999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
|....-...+. .+. ..+ .|+.+++ +|+++++
T Consensus 290 D~~~~~G~~ls----~~~----~~~-----~Pi~~i~--~Gq~v~D 320 (336)
T PRK14974 290 DADAKGGAALS----IAY----VIG-----KPILFLG--VGQGYDD 320 (336)
T ss_pred cCCCCccHHHH----HHH----HHC-----cCEEEEe--CCCChhh
Confidence 98643222221 111 122 3777877 7999865
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.30 E-value=1.1e-06 Score=81.76 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=39.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+++|.+|+|||||+|+|++.....+ ...+|.|.......+ ..
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~------------------------------~~~~g~T~~~~~~~~---~~ 147 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV------------------------------APIPGETKVWQYITL---MK 147 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee------------------------------CCCCCeeEeEEEEEc---CC
Confidence 357899999999999999999986433221 223566665443332 23
Q ss_pred EEEEEeCCCc
Q 009378 345 HVVVLDSPGH 354 (536)
Q Consensus 345 ~i~LIDTPGh 354 (536)
.+.|+||||.
T Consensus 148 ~~~liDtPGi 157 (157)
T cd01858 148 RIYLIDCPGV 157 (157)
T ss_pred CEEEEECcCC
Confidence 5899999993
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.29 E-value=2.3e-06 Score=79.20 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=50.4
Q ss_pred hhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCC
Q 009378 363 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (536)
Q Consensus 363 ~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~ 442 (536)
..++.+|++|+|+|+..+. ..+..++..++...+.| +|+|+||+|+.. ......+ ..+....+
T Consensus 8 ~i~~~aD~vl~V~D~~~~~--------~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~--~~~~~~~----~~~~~~~~-- 70 (156)
T cd01859 8 RIIKESDVVLEVLDARDPE--------LTRSRKLERYVLELGKK-LLIVLNKADLVP--KEVLEKW----KSIKESEG-- 70 (156)
T ss_pred HHHhhCCEEEEEeeCCCCc--------ccCCHHHHHHHHhCCCc-EEEEEEhHHhCC--HHHHHHH----HHHHHhCC--
Confidence 3445699999999998652 12223444445555666 999999999963 2222211 12222222
Q ss_pred CCCccEEEEEcccCCCccc
Q 009378 443 DASLTWIPLSALENQNLVT 461 (536)
Q Consensus 443 ~~~i~vipvSA~~GenI~e 461 (536)
.+++++||++|.|+.+
T Consensus 71 ---~~~~~iSa~~~~gi~~ 86 (156)
T cd01859 71 ---IPVVYVSAKERLGTKI 86 (156)
T ss_pred ---CcEEEEEccccccHHH
Confidence 3689999999999975
No 336
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=2.4e-06 Score=88.58 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=100.4
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCC-CccchhccccccccccccceEEEEEEE-Eeec
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK-GSFAYAWALDESAEERERGITMTVAVA-YFDS 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gk-gs~~~~~~~d~~~~e~~~GiTi~~~~~-~~~~ 341 (536)
....-|.++|+-..||||+|+.|+..... +..+... .+..|..+|....++..+|.+.-+... .|..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dyp-----------g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~g 124 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYP-----------GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRG 124 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCC-----------ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhh
Confidence 44566999999999999999999954321 0111111 123344555555566666665533311 1100
Q ss_pred -----------------C---CeEEEEEeCCCccc-----------chhhHhhhcccCCeEEEEeecCCCcccccccchh
Q 009378 342 -----------------K---NYHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAK 390 (536)
Q Consensus 342 -----------------~---~~~i~LIDTPGh~d-----------f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~ 390 (536)
+ -..++||||||.-. |..-..=.+..+|.+||++|+..-. +.
T Consensus 125 L~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD-------Is 197 (532)
T KOG1954|consen 125 LNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD-------IS 197 (532)
T ss_pred hhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc-------cc
Confidence 0 14699999999433 4433344566799999999997421 44
Q ss_pred hHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcC--CCCCCccEEEEEccc
Q 009378 391 GLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALE 455 (536)
Q Consensus 391 ~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g--~~~~~i~vipvSA~~ 455 (536)
....+++..++-..-+ +-||+||.|.++. + ++......++.++| ++-+.+.-+.+-+..
T Consensus 198 dEf~~vi~aLkG~Edk-iRVVLNKADqVdt--q---qLmRVyGALmWslgkv~nTpev~rvYigSfw 258 (532)
T KOG1954|consen 198 DEFKRVIDALKGHEDK-IRVVLNKADQVDT--Q---QLMRVYGALMWSLGKVMNTPEVSRVYIGSFW 258 (532)
T ss_pred HHHHHHHHHhhCCcce-eEEEeccccccCH--H---HHHHHHHHHHHhhhhhcCCCcceeEEeeccc
Confidence 6777777777766655 8899999999852 2 23444444544443 223344445554443
No 337
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.27 E-value=1.8e-05 Score=86.34 Aligned_cols=50 Identities=30% Similarity=0.450 Sum_probs=42.3
Q ss_pred CCcEEEEEecccccc-------cchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcc
Q 009378 405 VDQLIVAVNKMDAVQ-------YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (536)
Q Consensus 405 vp~vIVVINKiDl~~-------~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~ 460 (536)
+| |+||++|.|... |.++.|+.|.+.|+.++-.+|. .+|++|++...|+.
T Consensus 197 ip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~~n~~ 253 (472)
T PF05783_consen 197 IP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEEKNLD 253 (472)
T ss_pred cc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeeccccccHH
Confidence 45 999999999753 5678899999999999988886 56999999988885
No 338
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.26 E-value=3.2e-05 Score=79.27 Aligned_cols=48 Identities=33% Similarity=0.474 Sum_probs=42.3
Q ss_pred EEEEEeccccc-------ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcc
Q 009378 408 LIVAVNKMDAV-------QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (536)
Q Consensus 408 vIVVINKiDl~-------~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~ 460 (536)
++||++|+|.+ ++..+.|+.|...|+.|+-.+|. ..|++|++...||+
T Consensus 225 vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~KNid 279 (473)
T KOG3905|consen 225 VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETKNID 279 (473)
T ss_pred EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccccchH
Confidence 89999999984 35568899999999999998887 57999999999997
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.26 E-value=2.3e-06 Score=79.52 Aligned_cols=82 Identities=16% Similarity=0.032 Sum_probs=51.4
Q ss_pred HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhHHHHHHHHHHHHHHH
Q 009378 361 MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRS 438 (536)
Q Consensus 361 ~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~ 438 (536)
++..+..+|++|+|+|+..+. ......+...+... +.| +|+|+||+|+.. .+.+..+.. .+-+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~--------~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~--~~~~~~~~~---~~~~~ 67 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM--------GTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP--TWVTARWVK---ILSKE 67 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc--------cccCHHHHHHHHhccCCCC-EEEEEEchhcCC--HHHHHHHHH---HHhcC
Confidence 356788899999999998752 22333444444433 355 899999999973 232222222 22111
Q ss_pred cCCCCCCccEEEEEcccCCCccc
Q 009378 439 CGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 439 ~g~~~~~i~vipvSA~~GenI~e 461 (536)
+ .+.++++||+++.|+.+
T Consensus 68 ~-----~~~~~~iSa~~~~~~~~ 85 (157)
T cd01858 68 Y-----PTIAFHASINNPFGKGS 85 (157)
T ss_pred C-----cEEEEEeeccccccHHH
Confidence 1 12358999999999875
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.21 E-value=1.7e-06 Score=82.42 Aligned_cols=58 Identities=29% Similarity=0.358 Sum_probs=42.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
...++|+|+|.+|+|||||+|+|++..... ....+|+|.......+.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~------------------------------~~~~pg~T~~~~~~~~~--- 161 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACN------------------------------VGATPGVTKSMQEVHLD--- 161 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccce------------------------------ecCCCCeEcceEEEEeC---
Confidence 345889999999999999999999643321 12346777765554442
Q ss_pred eEEEEEeCCCc
Q 009378 344 YHVVVLDSPGH 354 (536)
Q Consensus 344 ~~i~LIDTPGh 354 (536)
..+.|+||||.
T Consensus 162 ~~~~l~DtPGi 172 (172)
T cd04178 162 KKVKLLDSPGI 172 (172)
T ss_pred CCEEEEECcCC
Confidence 36899999993
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.20 E-value=1e-05 Score=82.57 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=55.2
Q ss_pred CCeEEEEEeCCCcccchhhHh-------hhc-----ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEE
Q 009378 342 KNYHVVVLDSPGHKDFVPNMI-------SGA-----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~-------~~l-----~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vI 409 (536)
.++.++||||||........+ ... ..+|..+||+|+..+ .........+.+..++ .-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~~~f~~~~~~--~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQAKVFNEAVGL--TG 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHHHHHHhhCCC--CE
Confidence 567899999999654322221 111 238999999999865 1222233334444554 36
Q ss_pred EEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 410 VVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
+|+||+|....-...+ .. ....+ +|+.+++ +|+++++
T Consensus 222 ~IlTKlDe~~~~G~~l----~~----~~~~~-----~Pi~~~~--~Gq~~~d 258 (272)
T TIGR00064 222 IILTKLDGTAKGGIIL----SI----AYELK-----LPIKFIG--VGEKIDD 258 (272)
T ss_pred EEEEccCCCCCccHHH----HH----HHHHC-----cCEEEEe--CCCChHh
Confidence 8899999864322222 11 11223 3667777 7888765
No 342
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.14 E-value=1.9e-05 Score=76.75 Aligned_cols=67 Identities=24% Similarity=0.457 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCcccchhhHh------hhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~------~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
++..++||||||........+ ......+-++||++++.+ .........+...+++.. ++++|+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~---------~~~~~~~~~~~~~~~~~~--lIlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG---------QEDLEQALAFYEAFGIDG--LILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG---------GHHHHHHHHHHHHSSTCE--EEEEST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC---------hHHHHHHHHHhhcccCce--EEEEee
Confidence 457799999999554432221 112247889999999965 233445555556667763 669999
Q ss_pred cccc
Q 009378 416 DAVQ 419 (536)
Q Consensus 416 Dl~~ 419 (536)
|...
T Consensus 151 Det~ 154 (196)
T PF00448_consen 151 DETA 154 (196)
T ss_dssp TSSS
T ss_pred cCCC
Confidence 9874
No 343
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.14 E-value=1e-07 Score=90.18 Aligned_cols=153 Identities=18% Similarity=0.250 Sum_probs=100.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC---
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--- 342 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--- 342 (536)
-.++.|+|.-++|||+++.+.++....-..+. . -|+..... -+.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRA------------------t-----------Igvdfalk--Vl~wdd~t 73 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA------------------T-----------IGVDFALK--VLQWDDKT 73 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHH------------------H-----------HhHHHHHH--HhccChHH
Confidence 36799999999999999999986532211110 0 00000000 01111
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc----CCC-cEEEEEecccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVD-QLIVAVNKMDA 417 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----~vp-~vIVVINKiDl 417 (536)
-..+.|||..|+++|..++.-+++.+.++.+|+|.+..... ....++.-.+-..+ +.| ++|+..||+|.
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tf------e~~skwkqdldsk~qLpng~Pv~~vllankCd~ 147 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTF------EPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ 147 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccc------cHHHHHHHhccCcccCCCCCcchheeccchhcc
Confidence 24577999999999999998899999999999999976422 22223322222222 222 37899999998
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCcccC
Q 009378 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
-.+ ...+-..++..+.+..||. .|+++|++.+.|+.|.
T Consensus 148 e~~---a~~~~~~~~d~f~kengf~----gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 148 EKS---AKNEATRQFDNFKKENGFE----GWTETSAKENKNIPEA 185 (229)
T ss_pred ChH---hhhhhHHHHHHHHhccCcc----ceeeeccccccChhHH
Confidence 643 2223346677788888873 5799999999999873
No 344
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.13 E-value=3.2e-05 Score=76.60 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=54.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc--cccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL--GRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~--~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
.+...|+|+|++++|||||+|+|++.. ..+.. .....++|+.+-...... .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~--------------------------~~~~~T~gi~~~~~~~~~-~ 57 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD--------------------------TSQQTTKGIWMWSVPFKL-G 57 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC--------------------------CCCCCccceEEEeccccC-C
Confidence 345679999999999999999999652 11110 011223444332221111 2
Q ss_pred CCeEEEEEeCCCccc------chhhHhhhccc--CCeEEEEeecCC
Q 009378 342 KNYHVVVLDSPGHKD------FVPNMISGATQ--SDAAILVIDASV 379 (536)
Q Consensus 342 ~~~~i~LIDTPGh~d------f~~~~~~~l~~--aD~~ILVVDas~ 379 (536)
.+..++|+||||..+ .....+.++.. ++++|+.++...
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 457899999999433 22233444444 899999998764
No 345
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.09 E-value=1.1e-05 Score=73.63 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=53.5
Q ss_pred hhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc--CCCcEEEEEecccccccchhHHHHHHHHHHHHH
Q 009378 359 PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL 436 (536)
Q Consensus 359 ~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~--~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l 436 (536)
......+..+|++|+|+|+..+. ..+..++..++... +.| +|+|+||+|+.. +.... .+...+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~--------~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~--~~~~~----~~~~~~ 67 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL--------LFRPPDLERYVKEVDPRKK-NILLLNKADLLT--EEQRK----AWAEYF 67 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc--------ccCCHHHHHHHHhccCCCc-EEEEEechhcCC--HHHHH----HHHHHH
Confidence 34567788899999999998762 22333445555554 666 999999999973 22222 333344
Q ss_pred HHcCCCCCCccEEEEEcccCCC
Q 009378 437 RSCGFKDASLTWIPLSALENQN 458 (536)
Q Consensus 437 ~~~g~~~~~i~vipvSA~~Gen 458 (536)
+..+ .+++++||+++.+
T Consensus 68 ~~~~-----~~ii~iSa~~~~~ 84 (141)
T cd01857 68 KKEG-----IVVVFFSALKENA 84 (141)
T ss_pred HhcC-----CeEEEEEecCCCc
Confidence 4444 2679999999876
No 346
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.08 E-value=1.4e-05 Score=80.20 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=58.5
Q ss_pred ccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHH
Q 009378 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGT 434 (536)
Q Consensus 355 ~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~ 434 (536)
++|.......++.+|.+|+|+|+..+.+ . + ......+..+...++| +|||+||+|+... ... ..+...
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~--s---~-~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~--~~~---~~~~~~ 91 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPEL--S---L-NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD--EDM---EKEQLD 91 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCC--C---H-HHHHHHHHHHHHCCCC-EEEEEECcccCCC--HHH---HHHHHH
Confidence 3344444456888999999999986531 1 2 2233344455566777 8999999999742 111 112222
Q ss_pred HHHHcCCCCCCccEEEEEcccCCCcccCC
Q 009378 435 FLRSCGFKDASLTWIPLSALENQNLVTAP 463 (536)
Q Consensus 435 ~l~~~g~~~~~i~vipvSA~~GenI~e~~ 463 (536)
.++..++ +++++||++|+|+.++.
T Consensus 92 ~~~~~g~-----~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 92 IYRNIGY-----QVLMTSSKNQDGLKELI 115 (245)
T ss_pred HHHHCCC-----eEEEEecCCchhHHHHH
Confidence 3334444 78999999999998743
No 347
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.08 E-value=8.2e-06 Score=69.46 Aligned_cols=42 Identities=38% Similarity=0.583 Sum_probs=38.8
Q ss_pred CCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 492 ~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
++||||+|.++|+.. .|++ ++|+|++|.|++||+|+++|.+.
T Consensus 2 ~~p~r~~V~~vf~~~g~g~v-v~G~v~~G~i~~gd~v~i~P~~~ 44 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTV-PVGRVETGVLKPGMVVTFAPAGV 44 (91)
T ss_pred CCCeEEEEEEEEEeCCceEE-EEEEEecceeecCCEEEECCCCc
Confidence 579999999999988 8988 89999999999999999999863
No 348
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.04 E-value=1.2e-05 Score=76.93 Aligned_cols=91 Identities=18% Similarity=0.062 Sum_probs=53.8
Q ss_pred chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHH-HH
Q 009378 357 FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG-TF 435 (536)
Q Consensus 357 f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~-~~ 435 (536)
|...+..++..+|++|+|+|+..... ....+. .....+.| +|+|+||+|+.... .....+...+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l--~~~~~~~~-~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL--RLFGGNNP-VILVGNKIDLLPKD-KNLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--------ccchhH--HHhcCCCc-EEEEEEchhcCCCC-CCHHHHHHHHHHHH
Confidence 56677778899999999999986421 111111 11223455 99999999997422 21122211110 11
Q ss_pred HHHcCCCCCCccEEEEEcccCCCccc
Q 009378 436 LRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 436 l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
.+..++.. .+++++||++|+|+.+
T Consensus 92 ~~~~~~~~--~~i~~vSA~~~~gi~e 115 (190)
T cd01855 92 AAGLGLKP--KDVILISAKKGWGVEE 115 (190)
T ss_pred HhhcCCCc--ccEEEEECCCCCCHHH
Confidence 12233321 2579999999999986
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.99 E-value=2.1e-05 Score=72.96 Aligned_cols=74 Identities=24% Similarity=0.215 Sum_probs=45.6
Q ss_pred CeEEEEeecCCCcccccccchhhHHHHHH-HHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCCcc
Q 009378 369 DAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLT 447 (536)
Q Consensus 369 D~~ILVVDas~g~~e~~~~~~~~qt~e~l-~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~ 447 (536)
|++|+|+|+..+.. ....... ..+...+.| +|+|+||+|++. .+...++.. .+ .... ...
T Consensus 1 Dvvl~VvD~~~p~~--------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~--~~~~~~~~~---~~-~~~~----~~~ 61 (155)
T cd01849 1 DVILEVLDARDPLG--------TRSPDIERVLIKEKGKK-LILVLNKADLVP--KEVLRKWLA---YL-RHSY----PTI 61 (155)
T ss_pred CEEEEEEeccCCcc--------ccCHHHHHHHHhcCCCC-EEEEEechhcCC--HHHHHHHHH---HH-HhhC----Cce
Confidence 78999999986521 1122222 344555666 999999999973 222222221 22 1111 125
Q ss_pred EEEEEcccCCCccc
Q 009378 448 WIPLSALENQNLVT 461 (536)
Q Consensus 448 vipvSA~~GenI~e 461 (536)
++++||++|.|+.+
T Consensus 62 ii~vSa~~~~gi~~ 75 (155)
T cd01849 62 PFKISATNGQGIEK 75 (155)
T ss_pred EEEEeccCCcChhh
Confidence 79999999999975
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.99 E-value=2.6e-05 Score=84.11 Aligned_cols=65 Identities=28% Similarity=0.509 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCcccch----hhHhh--hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH-HcCCCcEEEEEec
Q 009378 342 KNYHVVVLDSPGHKDFV----PNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~----~~~~~--~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~-~~~vp~vIVVINK 414 (536)
.++.++||||||..... ..+.. ....+|.++||+|+..|- .......... ..++ --+|+||
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq----------~a~~~a~~F~~~~~~--~g~IlTK 248 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ----------AAEAQAKAFKDSVDV--GSVIITK 248 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh----------hHHHHHHHHHhccCC--cEEEEEC
Confidence 36789999999954332 22222 234578999999998661 1122222222 2333 4788999
Q ss_pred cccc
Q 009378 415 MDAV 418 (536)
Q Consensus 415 iDl~ 418 (536)
+|..
T Consensus 249 lD~~ 252 (429)
T TIGR01425 249 LDGH 252 (429)
T ss_pred ccCC
Confidence 9975
No 351
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.99 E-value=1.8e-05 Score=78.79 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=58.2
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.-+|.++|-|.+|||||+..|++....+.. ...++..+.+|+ ..+++..
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vas-----------------------yefttl~~vpG~--------~~y~gaK 107 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAA-----------------------YEFTTLTTVPGV--------IRYKGAK 107 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCcccc-----------------------ccceeEEEecce--------Eeccccc
Confidence 348999999999999999999854322211 122222233333 4467888
Q ss_pred EEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCCC
Q 009378 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (536)
Q Consensus 346 i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~g 380 (536)
+.+.|.||..+ --+..+..++.|.++++|+|+..+
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 99999999543 234456677889999999999864
No 352
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=97.98 E-value=2.5e-06 Score=57.67 Aligned_cols=29 Identities=34% Similarity=0.752 Sum_probs=23.6
Q ss_pred CCceeecccccCCCCCccccccccCCCCc
Q 009378 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (536)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (536)
.|.|.|+.|||.|..+...|.|||+.|..
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 46799999999999999999999999963
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.97 E-value=8.4e-06 Score=75.65 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=39.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
...+|+|+|.+|+|||||+|+|++..... ....+|+|.......+. .
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~---~ 145 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK------------------------------VGNVPGTTTSQQEVKLD---N 145 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc------------------------------ccCCCCcccceEEEEec---C
Confidence 35789999999999999999999543211 12224555555444432 4
Q ss_pred EEEEEeCCCc
Q 009378 345 HVVVLDSPGH 354 (536)
Q Consensus 345 ~i~LIDTPGh 354 (536)
.+.|+||||.
T Consensus 146 ~~~liDtPG~ 155 (155)
T cd01849 146 KIKLLDTPGI 155 (155)
T ss_pred CEEEEECCCC
Confidence 6999999993
No 354
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=8.3e-06 Score=78.14 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=41.6
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
..+|+|+|.+|+|||||+|+|++........ .........+|+|.......+.. .
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~----------------------~~~~~~~~~~gtT~~~~~~~~~~---~ 181 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKL----------------------KDLLTTSPIPGTTLDLIKIPLGN---G 181 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhccccccc----------------------ccccccCCCCCeeeeeEEEecCC---C
Confidence 3579999999999999999999543211000 00012233467777766555532 5
Q ss_pred EEEEeCCCc
Q 009378 346 VVVLDSPGH 354 (536)
Q Consensus 346 i~LIDTPGh 354 (536)
+.||||||.
T Consensus 182 ~~~~DtPG~ 190 (190)
T cd01855 182 KKLYDTPGI 190 (190)
T ss_pred CEEEeCcCC
Confidence 899999993
No 355
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.94 E-value=1.1e-05 Score=84.41 Aligned_cols=57 Identities=32% Similarity=0.410 Sum_probs=43.2
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
.+.++++|+|-+|+|||||||+|++.....+ .+.+|+|.......+..
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~------------------------------s~~PG~Tk~~q~i~~~~-- 177 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKT------------------------------SNRPGTTKGIQWIKLDD-- 177 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceee------------------------------CCCCceecceEEEEcCC--
Confidence 3457899999999999999999997654322 23368887766655433
Q ss_pred eEEEEEeCCC
Q 009378 344 YHVVVLDSPG 353 (536)
Q Consensus 344 ~~i~LIDTPG 353 (536)
.+.|+||||
T Consensus 178 -~i~LlDtPG 186 (322)
T COG1161 178 -GIYLLDTPG 186 (322)
T ss_pred -CeEEecCCC
Confidence 489999999
No 356
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.93 E-value=1.1e-05 Score=73.69 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+++++|.+|+|||||+|+|++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999854
No 357
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.93 E-value=2.7e-05 Score=65.03 Aligned_cols=40 Identities=33% Similarity=0.575 Sum_probs=36.7
Q ss_pred CeeEEEEEEEEeCCCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 494 PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 494 P~~~~I~d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
||+|+|+++|+.+.|++ ++|+|++|+|++||+|+++|++.
T Consensus 1 p~r~~V~~v~~~~~g~v-v~G~v~~G~i~~Gd~v~i~P~~~ 40 (83)
T cd03698 1 PFRLPISDKYKDQGGTV-VSGKVESGSIQKGDTLLVMPSKE 40 (83)
T ss_pred CeEEEEEeEEEcCCCcE-EEEEEeeeEEeCCCEEEEeCCCc
Confidence 79999999998777877 89999999999999999999864
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.91 E-value=2.5e-05 Score=73.72 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=56.1
Q ss_pred CCCc-ccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHH
Q 009378 351 SPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (536)
Q Consensus 351 TPGh-~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~ 429 (536)
-||| .+...++...+..+|++|+|+|+..+.. ....+.+..+ .+.| +|+|+||+|+.. ......
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~--------~~~~~i~~~~--~~k~-~ilVlNK~Dl~~--~~~~~~-- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS--------SRNPLLEKIL--GNKP-RIIVLNKADLAD--PKKTKK-- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC--------cCChhhHhHh--cCCC-EEEEEehhhcCC--hHHHHH--
Confidence 4675 3456677888899999999999986521 1112222222 2445 899999999963 222111
Q ss_pred HHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 430 ~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
...+++..+ ..++++||++++|+.+
T Consensus 67 --~~~~~~~~~-----~~vi~iSa~~~~gi~~ 91 (171)
T cd01856 67 --WLKYFESKG-----EKVLFVNAKSGKGVKK 91 (171)
T ss_pred --HHHHHHhcC-----CeEEEEECCCcccHHH
Confidence 112222222 2579999999999985
No 359
>PRK12288 GTPase RsgA; Reviewed
Probab=97.90 E-value=1.4e-05 Score=84.26 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=40.4
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
.++|+|.+|+|||||||+|++.....+.... ....+.+.+|.....+.+..+ ..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is-----------------------~~~~rGrHTT~~~~l~~l~~~---~~ 260 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVS-----------------------DNSGLGQHTTTAARLYHFPHG---GD 260 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeecccc-----------------------CcCCCCcCceeeEEEEEecCC---CE
Confidence 3799999999999999999965433222110 011222445555555444332 35
Q ss_pred EEeCCCcccch
Q 009378 348 VLDSPGHKDFV 358 (536)
Q Consensus 348 LIDTPGh~df~ 358 (536)
||||||...|-
T Consensus 261 liDTPGir~~~ 271 (347)
T PRK12288 261 LIDSPGVREFG 271 (347)
T ss_pred EEECCCCCccc
Confidence 99999976653
No 360
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.90 E-value=8.2e-06 Score=76.42 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-++|+|..|+|||||+++|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3789999999999999999855
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.90 E-value=1.8e-05 Score=81.31 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=41.1
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+|+|.+|+|||||+|+|++..... ....+|+|........ +.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~~ 166 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK------------------------------TGNRPGVTKAQQWIKL---GK 166 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc------------------------------cCCCCCeEEEEEEEEe---CC
Confidence 46889999999999999999999543211 1223677776654443 24
Q ss_pred EEEEEeCCCc
Q 009378 345 HVVVLDSPGH 354 (536)
Q Consensus 345 ~i~LIDTPGh 354 (536)
.+.||||||.
T Consensus 167 ~~~l~DtPGi 176 (287)
T PRK09563 167 GLELLDTPGI 176 (287)
T ss_pred cEEEEECCCc
Confidence 6899999995
No 362
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.87 E-value=7.3e-06 Score=77.15 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
..++++|+.|+|||||+|+|+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 569999999999999999999653
No 363
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.87 E-value=1.8e-05 Score=80.75 Aligned_cols=57 Identities=28% Similarity=0.264 Sum_probs=39.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
+.++|+|+|.+|+|||||+|+|++.....+ ...+|+|.......+. .
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~------------------------------~~~~g~T~~~~~~~~~---~ 163 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV------------------------------GNRPGVTKGQQWIKLS---D 163 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc------------------------------CCCCCeecceEEEEeC---C
Confidence 468899999999999999999985432111 1235566555444332 3
Q ss_pred EEEEEeCCCc
Q 009378 345 HVVVLDSPGH 354 (536)
Q Consensus 345 ~i~LIDTPGh 354 (536)
.+.|+||||.
T Consensus 164 ~~~l~DtPG~ 173 (276)
T TIGR03596 164 GLELLDTPGI 173 (276)
T ss_pred CEEEEECCCc
Confidence 5899999995
No 364
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.85 E-value=3.4e-05 Score=78.73 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCCccc-chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHH
Q 009378 351 SPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (536)
Q Consensus 351 TPGh~d-f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~ 429 (536)
-|||.. ....+...+..+|++|+|+|+..+.. ........++ .+.| +|+|+||+|++. ......+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~--------~~~~~i~~~l--~~kp-~IiVlNK~DL~~--~~~~~~~~ 70 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLS--------SRNPMIDEIR--GNKP-RLIVLNKADLAD--PAVTKQWL 70 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC--------CCChhHHHHH--CCCC-EEEEEEccccCC--HHHHHHHH
Confidence 478643 55667778889999999999986521 1112222222 2444 899999999973 22222222
Q ss_pred HHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 430 ~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..++..+ .+++++||+++.|+.+
T Consensus 71 ----~~~~~~~-----~~vi~iSa~~~~gi~~ 93 (276)
T TIGR03596 71 ----KYFEEKG-----IKALAINAKKGKGVKK 93 (276)
T ss_pred ----HHHHHcC-----CeEEEEECCCcccHHH
Confidence 2222223 2679999999999975
No 365
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=2.8e-05 Score=82.68 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=42.7
Q ss_pred CeEEEEEeCCCcccc----hhhHhhhc--ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 343 NYHVVVLDSPGHKDF----VPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 343 ~~~i~LIDTPGh~df----~~~~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
++.++||||||.... +..+...+ ...+.++||++++.+ .....+.+.....+++. =++++|+|
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---------~~d~~~i~~~F~~~~id--glI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---------hHHHHHHHHHhcCCCCC--EEEEEccc
Confidence 468999999995432 22232222 336788999998754 12345555555556665 47899999
Q ss_pred ccc
Q 009378 417 AVQ 419 (536)
Q Consensus 417 l~~ 419 (536)
...
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 874
No 366
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.84 E-value=0.00011 Score=75.85 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=57.3
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee--
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-- 340 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~-- 340 (536)
..+.++|+|||.+|+|||||+|+|+...... ++|.|+ +.+++.+. +.+....|+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~-----------------~NfPF~------TIdPn~a~-V~v~d~Rfd~l 72 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGA-----------------ANFPFC------TIDPNEAR-VEVPDSRFDLL 72 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCc-----------------cCCCcc------eeccccce-eecCchHHHHH
Confidence 3467899999999999999999999544332 222222 12222211 000000111
Q ss_pred -----c---CCeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCC
Q 009378 341 -----S---KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 341 -----~---~~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~ 379 (536)
. -...++++|++|... +-...+..++.+|+++.||++..
T Consensus 73 ~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 73 CPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 0 124588999999322 44556778899999999999875
No 367
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.84 E-value=2.5e-05 Score=73.77 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=39.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCe
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (536)
..++|+++|.+|+|||||+|+|++.... ......++|.......+. .
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~---~ 160 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS---P 160 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---C
Confidence 3478999999999999999999953221 111224566655544443 4
Q ss_pred EEEEEeCCCc
Q 009378 345 HVVVLDSPGH 354 (536)
Q Consensus 345 ~i~LIDTPGh 354 (536)
.+.||||||.
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 5899999995
No 368
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.83 E-value=4.6e-05 Score=63.50 Aligned_cols=39 Identities=36% Similarity=0.601 Sum_probs=35.9
Q ss_pred CeeEEEEEEEEeCCCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 494 PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 494 P~~~~I~d~~~~~~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
||+|+|.++|+.. |++ ++|+|++|+|++||+|+++|.+.
T Consensus 1 plr~~I~~v~~~~-g~v-v~G~v~~G~i~~G~~v~i~P~~~ 39 (82)
T cd04089 1 PLRLPIIDKYKDM-GTV-VLGKVESGTIKKGDKLLVMPNKT 39 (82)
T ss_pred CeEEEEEeEEEcC-CEE-EEEEEeeeEEecCCEEEEeCCCc
Confidence 7999999999875 887 89999999999999999999864
No 369
>PRK12289 GTPase RsgA; Reviewed
Probab=97.83 E-value=7.1e-05 Score=79.12 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=54.4
Q ss_pred hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCC
Q 009378 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (536)
Q Consensus 364 ~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~ 443 (536)
.+.++|.+|||+|+..+.+. .......+..+...++| +|||+||+|++. ....+ .+...+..+|+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~------~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~--~~~~~----~~~~~~~~~g~-- 150 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD------PWQLSRFLVKAESTGLE-IVLCLNKADLVS--PTEQQ----QWQDRLQQWGY-- 150 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEEchhcCC--hHHHH----HHHHHHHhcCC--
Confidence 46789999999999854211 11233444445556777 899999999973 22222 22333445565
Q ss_pred CCccEEEEEcccCCCcccC
Q 009378 444 ASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 444 ~~i~vipvSA~~GenI~e~ 462 (536)
+++++||++|+|+.++
T Consensus 151 ---~v~~iSA~tg~GI~eL 166 (352)
T PRK12289 151 ---QPLFISVETGIGLEAL 166 (352)
T ss_pred ---eEEEEEcCCCCCHHHH
Confidence 6799999999999874
No 370
>PRK00098 GTPase RsgA; Reviewed
Probab=97.83 E-value=7.5e-05 Score=77.17 Aligned_cols=81 Identities=27% Similarity=0.368 Sum_probs=54.1
Q ss_pred cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCC
Q 009378 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (536)
Q Consensus 365 l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~ 444 (536)
+..+|++|+|+|+..+.+ ........+..+...++| +|||+||+|+... .... ..+...++.+++
T Consensus 78 aaniD~vllV~d~~~p~~------~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~-~~~~----~~~~~~~~~~g~--- 142 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDF------STDLLDRFLVLAEANGIK-PIIVLNKIDLLDD-LEEA----RELLALYRAIGY--- 142 (298)
T ss_pred eecCCEEEEEEECCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEEhHHcCCC-HHHH----HHHHHHHHHCCC---
Confidence 578999999999975421 112333445556667787 8999999999632 2221 223333444554
Q ss_pred CccEEEEEcccCCCcccC
Q 009378 445 SLTWIPLSALENQNLVTA 462 (536)
Q Consensus 445 ~i~vipvSA~~GenI~e~ 462 (536)
+++++||++|+|+.++
T Consensus 143 --~v~~vSA~~g~gi~~L 158 (298)
T PRK00098 143 --DVLELSAKEGEGLDEL 158 (298)
T ss_pred --eEEEEeCCCCccHHHH
Confidence 7899999999999864
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.81 E-value=0.00017 Score=68.01 Aligned_cols=68 Identities=22% Similarity=0.436 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCcccc----hhhHhh--hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 342 KNYHVVVLDSPGHKDF----VPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df----~~~~~~--~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.++.++|+||||...+ ...+.. .....+.++||+++..+ .........+.+..++ ..+|+||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---------~~~~~~~~~~~~~~~~--~~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---------QDAVNQAKAFNEALGI--TGVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---------hHHHHHHHHHHhhCCC--CEEEEECC
Confidence 4567899999997533 222211 12348999999998743 1222333344445564 46788999
Q ss_pred ccccc
Q 009378 416 DAVQY 420 (536)
Q Consensus 416 Dl~~~ 420 (536)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 98753
No 372
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.81 E-value=2.5e-05 Score=74.41 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=42.7
Q ss_pred CeEEEEEeCCCcccchhh-----HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccc
Q 009378 343 NYHVVVLDSPGHKDFVPN-----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~-----~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl 417 (536)
...+.||.+.|..+-... ........+.+|.|||+..-. ... .. ...+..++..-. +|++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~------~~~-~~--~~~~~~Qi~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFD------ELE-NI--PELLREQIAFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHG------GHT-TH--CHHHHHHHCT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEecccccc------ccc-cc--hhhhhhcchhcC-EEEEecccc
Confidence 457899999994443222 122234478999999996420 011 11 111223333322 789999999
Q ss_pred cccchhHHHHHHHHHHHH
Q 009378 418 VQYSKDRFDSIKVQLGTF 435 (536)
Q Consensus 418 ~~~~~e~~eei~~~L~~~ 435 (536)
+... ..++.+++.++.+
T Consensus 154 ~~~~-~~i~~~~~~ir~l 170 (178)
T PF02492_consen 154 VSDE-QKIERVREMIREL 170 (178)
T ss_dssp HHHH---HHHHHHHHHHH
T ss_pred CChh-hHHHHHHHHHHHH
Confidence 9431 2335555555554
No 373
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.81 E-value=0.00025 Score=67.09 Aligned_cols=82 Identities=23% Similarity=0.369 Sum_probs=56.6
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~ 421 (536)
..+.++|+|||+... ......+..+|.+|+|+..... -.......+.+++..+.+ +.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~--------~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~~- 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS--------GLHDLERAVELVRHFGIP-VGVVINKYDLNDE- 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc--------cHHHHHHHHHHHHHcCCC-EEEEEeCCCCCcc-
Confidence 578899999997532 2344566789999999998754 123556666777778887 7899999996521
Q ss_pred hhHHHHHHHHHHHHHHHcCC
Q 009378 422 KDRFDSIKVQLGTFLRSCGF 441 (536)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~ 441 (536)
..+++..+++.+++
T Consensus 159 ------~~~~~~~~~~~~~~ 172 (179)
T cd03110 159 ------IAEEIEDYCEEEGI 172 (179)
T ss_pred ------hHHHHHHHHHHcCC
Confidence 12344555666554
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.78 E-value=6.4e-05 Score=79.72 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=62.4
Q ss_pred cccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHH
Q 009378 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (536)
Q Consensus 354 h~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~ 433 (536)
.++|...+......++++|+|+|+.+.. .....++...+. +. ++++|+||+|+.... ...+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~~--~~-piilV~NK~DLl~k~-~~~~~~~~~l~ 117 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFVG--GN-PVLLVGNKIDLLPKS-VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHhC--CC-CEEEEEEchhhCCCC-CCHHHHHHHHH
Confidence 4567666666667899999999986531 122223222221 34 499999999997532 22344555566
Q ss_pred HHHHHcCCCCCCccEEEEEcccCCCcccCC
Q 009378 434 TFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (536)
Q Consensus 434 ~~l~~~g~~~~~i~vipvSA~~GenI~e~~ 463 (536)
.+++..++... .++++||++|.|+.++.
T Consensus 118 ~~~k~~g~~~~--~i~~vSAk~g~gv~eL~ 145 (360)
T TIGR03597 118 KRAKELGLKPV--DIILVSAKKGNGIDELL 145 (360)
T ss_pred HHHHHcCCCcC--cEEEecCCCCCCHHHHH
Confidence 66777776322 47999999999998743
No 375
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.75 E-value=0.00016 Score=78.45 Aligned_cols=63 Identities=25% Similarity=0.525 Sum_probs=38.7
Q ss_pred eEEEEEeCCCcccchhhH------hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHH-HHcCCCcEEEEEeccc
Q 009378 344 YHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKMD 416 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~------~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll-~~~~vp~vIVVINKiD 416 (536)
..++||||||.......+ +..+..+|.++||+|+..+ .......... ..+++ .-||+||+|
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g----------q~av~~a~~F~~~l~i--~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG----------QQAKNQAKAFHEAVGI--GGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc----------HHHHHHHHHHHhcCCC--CEEEEeccc
Confidence 479999999965543222 2334568999999999865 1111222222 22333 357899999
Q ss_pred cc
Q 009378 417 AV 418 (536)
Q Consensus 417 l~ 418 (536)
..
T Consensus 244 ~~ 245 (437)
T PRK00771 244 GT 245 (437)
T ss_pred CC
Confidence 75
No 376
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.75 E-value=3.1e-05 Score=77.83 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++|+|++|+|||||+|+|++..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68999999999999999999643
No 377
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.73 E-value=6.5e-05 Score=72.97 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=45.1
Q ss_pred CeEEEEEeCCCcc------cchhhHhhhccc---CCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009378 343 NYHVVVLDSPGHK------DFVPNMISGATQ---SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 343 ~~~i~LIDTPGh~------df~~~~~~~l~~---aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
...+.++|+||+. ...++....+.+ -=++++++|+. |-.+..++..-....+.....+.+| -|-|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsq---f~vD~~KfiSG~lsAlsAMi~lE~P-~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQ---FLVDSTKFISGCLSALSAMISLEVP-HINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccc---hhhhHHHHHHHHHHHHHHHHHhcCc-chhhhh
Confidence 3568999999944 345555555555 23577777764 2222222333333444445557888 589999
Q ss_pred cccccc
Q 009378 414 KMDAVQ 419 (536)
Q Consensus 414 KiDl~~ 419 (536)
|||+++
T Consensus 173 KMDLlk 178 (273)
T KOG1534|consen 173 KMDLLK 178 (273)
T ss_pred HHHHhh
Confidence 999985
No 378
>PRK12289 GTPase RsgA; Reviewed
Probab=97.72 E-value=3.4e-05 Score=81.55 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.++|+|.+|+|||||||+|++...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999996543
No 379
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.69 E-value=7.3e-05 Score=76.81 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=56.9
Q ss_pred eCCCccc-chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHH
Q 009378 350 DSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSI 428 (536)
Q Consensus 350 DTPGh~d-f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei 428 (536)
.-|||.. -...+...+..+|++|+|+|+..+. .....++..++. +.| +|+|+||+|+.. ....+.+
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~--------~~~~~~l~~~~~--~kp-~iiVlNK~DL~~--~~~~~~~ 72 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPL--------SSENPMIDKIIG--NKP-RLLILNKSDLAD--PEVTKKW 72 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCC--------CCCChhHHHHhC--CCC-EEEEEEchhcCC--HHHHHHH
Confidence 4588643 4555677888999999999998652 112222222222 455 899999999973 2222222
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 429 KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 429 ~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
..+++..+ .+++++||+++.|+.+
T Consensus 73 ----~~~~~~~~-----~~vi~vSa~~~~gi~~ 96 (287)
T PRK09563 73 ----IEYFEEQG-----IKALAINAKKGQGVKK 96 (287)
T ss_pred ----HHHHHHcC-----CeEEEEECCCcccHHH
Confidence 22233223 3679999999999875
No 380
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.68 E-value=4.5e-05 Score=78.24 Aligned_cols=65 Identities=26% Similarity=0.318 Sum_probs=40.3
Q ss_pred EEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEE
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~ 347 (536)
..+++|+.|+|||||+|+|......-+... .. ...+.+.+|.....+.+...+ .
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eI-------S~----------------~~~rGkHTTt~~~l~~l~~gG---~ 219 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEI-------SE----------------KLGRGRHTTTHVELFPLPGGG---W 219 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhh-------cc----------------cCCCCCCccceEEEEEcCCCC---E
Confidence 688999999999999999985322211110 00 111234455555555554333 6
Q ss_pred EEeCCCcccch
Q 009378 348 VLDSPGHKDFV 358 (536)
Q Consensus 348 LIDTPGh~df~ 358 (536)
||||||...|-
T Consensus 220 iiDTPGf~~~~ 230 (301)
T COG1162 220 IIDTPGFRSLG 230 (301)
T ss_pred EEeCCCCCccC
Confidence 89999976653
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00013 Score=77.43 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhc
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
+.-.|+|+|++|+||||++..|...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999854
No 382
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.65 E-value=8.1e-05 Score=78.77 Aligned_cols=90 Identities=20% Similarity=0.167 Sum_probs=57.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc-ccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEE---------E
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLG-RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA---------V 336 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~-~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~---------~ 336 (536)
++++|+|.+|+|||||+++|++... .+... ...+.++..|+-.-.. +
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-----------------------pftTi~p~~g~v~v~d~r~d~L~~~~ 59 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-----------------------PFTTIEPNAGVVNPSDPRLDLLAIYI 59 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC-----------------------CCCCCCCceeEEEechhHHHHHHHHh
Confidence 6899999999999999999996654 22211 1222333333321000 0
Q ss_pred EEeecCCeEEEEEeCCCccc-------chhhHhhhcccCCeEEEEeecCC
Q 009378 337 AYFDSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 337 ~~~~~~~~~i~LIDTPGh~d-------f~~~~~~~l~~aD~~ILVVDas~ 379 (536)
..-......+.|+|.||... .....+..++.+|++++||++..
T Consensus 60 ~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 60 KPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 00011234689999999432 44566778899999999999863
No 383
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.65 E-value=0.00024 Score=65.99 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCC
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~ 379 (536)
.++.+.||||||.... ....+..+|.+|+|+....
T Consensus 90 ~~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~ 124 (148)
T cd03114 90 AGFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGA 124 (148)
T ss_pred cCCCEEEEECCccChh---hhhHHHhCCEEEEEECCCc
Confidence 4688999999995433 3447788999999988763
No 384
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.63 E-value=9.8e-05 Score=62.32 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=35.6
Q ss_pred eeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 495 ~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
|+|+|.++|+++ .|+| ++|+|++|.|++||+++++|.+
T Consensus 1 ~~~~I~~vf~v~g~GtV-v~G~v~~G~v~~g~~v~~~P~~ 39 (87)
T cd03694 1 AEFQIDEIYSVPGVGTV-VGGTVSKGVIRLGDTLLLGPDQ 39 (87)
T ss_pred CEEEEEeEEEcCCcceE-EEEEEecCEEeCCCEEEECCCC
Confidence 579999999988 9998 8999999999999999999984
No 385
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.63 E-value=0.00011 Score=61.17 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=36.0
Q ss_pred eeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 495 ~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
|+|+|.++|+.+ .|.+ +.|+|++|+|++|++|+++|.+.
T Consensus 1 lr~~i~~~~~~~~~g~v-v~G~v~sG~i~~g~~v~~~p~~~ 40 (83)
T cd03696 1 FRLPIDRVFTVKGQGTV-VTGTVLSGSVKVGDKVEILPLGE 40 (83)
T ss_pred CEEEEEEEEEcCCcEEE-EEEEEeecEEeCCCEEEECCCCc
Confidence 689999999988 8988 89999999999999999999763
No 386
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.62 E-value=0.00012 Score=77.86 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=78.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhccc------ccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEE
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG------RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY 338 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~------~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~ 338 (536)
+...|++||++|+||||.+-.|..... .+.--++.+|+.++.++=+... ..-|+.+.+....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya------------~im~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYA------------DIMGVPLEVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHH------------HHhCCceEEecCH
Confidence 477899999999999999999875443 1111223445555544433111 1123333322211
Q ss_pred -------eecCCeEEEEEeCCCcccchhh----Hhhhcc--cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC
Q 009378 339 -------FDSKNYHVVVLDSPGHKDFVPN----MISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (536)
Q Consensus 339 -------~~~~~~~i~LIDTPGh~df~~~----~~~~l~--~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v 405 (536)
.......++||||.|+..+-.. +...+. ...-.-||++++.. ....++.+.....+++
T Consensus 270 ~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---------~~dlkei~~~f~~~~i 340 (407)
T COG1419 270 KELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---------YEDLKEIIKQFSLFPI 340 (407)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---------hHHHHHHHHHhccCCc
Confidence 1124578999999996554322 222222 23456677888753 3566777777777777
Q ss_pred CcEEEEEecccccc
Q 009378 406 DQLIVAVNKMDAVQ 419 (536)
Q Consensus 406 p~vIVVINKiDl~~ 419 (536)
.. +++||+|...
T Consensus 341 ~~--~I~TKlDET~ 352 (407)
T COG1419 341 DG--LIFTKLDETT 352 (407)
T ss_pred ce--eEEEcccccC
Confidence 74 6789999874
No 387
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62 E-value=0.00048 Score=70.29 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=42.6
Q ss_pred CeEEEEEeCCCcccc----hhhHhhh--cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 343 NYHVVVLDSPGHKDF----VPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 343 ~~~i~LIDTPGh~df----~~~~~~~--l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
+..++||||||.... +..+... ....+-++||++++.. .....+.+......++. =++++|+|
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---------~~d~~~~~~~f~~~~~~--~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---------HHHHHHHHHHhCCCCCC--EEEEEeec
Confidence 578999999995532 2323222 2346788999999853 13444454544555665 57899999
Q ss_pred ccc
Q 009378 417 AVQ 419 (536)
Q Consensus 417 l~~ 419 (536)
...
T Consensus 223 et~ 225 (270)
T PRK06731 223 ETA 225 (270)
T ss_pred CCC
Confidence 874
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00033 Score=77.21 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCCchhhhhhhhh
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
..-.|+|+|..|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 389
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.62 E-value=9.5e-05 Score=78.44 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=66.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+|+|+|.+|+|||||+|+|++...... +.......+|+|.......+ ...+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-------------------------~~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-------------------------DVITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-------------------------ceeeecCCCCeEeeEEEEEe---CCCC
Confidence 4799999999999999999995432110 01122344777776554443 2246
Q ss_pred EEEeCCCcccch--hhH--------hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 347 VVLDSPGHKDFV--PNM--------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 347 ~LIDTPGh~df~--~~~--------~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
.|+||||..... ..+ +..-.......+.++..+..+..++..+. .+..... .+.+.++|.+
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d--------~~~~~~~-~~~~~~~~~~ 277 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFD--------YLKGEKT-SFTFYVSNEL 277 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEE--------EecCCce-EEEEEccCCc
Confidence 899999943221 111 11123367788888877665544433221 1111122 3677777777
Q ss_pred ccc
Q 009378 417 AVQ 419 (536)
Q Consensus 417 l~~ 419 (536)
.+.
T Consensus 278 ~~h 280 (360)
T TIGR03597 278 NIH 280 (360)
T ss_pred eeE
Confidence 663
No 390
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.58 E-value=0.002 Score=68.77 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=75.7
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.+=|+|||++-+||||||.|+......+........++...+.......-+..+-.-+.-+...+.+.+ -+.-..+
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l----~~~~~~k 92 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITL----DDGIKVK 92 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEe----cCCceEE
Confidence 466999999999999999999977766554443333332222221111000111000111112222211 1223567
Q ss_pred EEEEeCCC--------ccc-----------------chhhHhhhccc-----CCe-EEEEeecCCCcccccccchhhHHH
Q 009378 346 VVVLDSPG--------HKD-----------------FVPNMISGATQ-----SDA-AILVIDASVGSFEVGMNTAKGLTR 394 (536)
Q Consensus 346 i~LIDTPG--------h~d-----------------f~~~~~~~l~~-----aD~-~ILVVDas~g~~e~~~~~~~~qt~ 394 (536)
+.+|||-| |.+ |.....-+.+. +-. +|+--|.+-+ +-..+.......
T Consensus 93 VRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~--dipRe~Y~eAEe 170 (492)
T PF09547_consen 93 VRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSIT--DIPRENYVEAEE 170 (492)
T ss_pred EEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCcc--CCChHHHHHHHH
Confidence 88999998 111 22222222221 333 3333344422 233334455667
Q ss_pred HHHHHHHHcCCCcEEEEEecccc
Q 009378 395 EHAQLIRSFGVDQLIVAVNKMDA 417 (536)
Q Consensus 395 e~l~ll~~~~vp~vIVVINKiDl 417 (536)
..+.-|++++.| +||++|=.+-
T Consensus 171 rvI~ELk~igKP-FvillNs~~P 192 (492)
T PF09547_consen 171 RVIEELKEIGKP-FVILLNSTKP 192 (492)
T ss_pred HHHHHHHHhCCC-EEEEEeCCCC
Confidence 778888999998 9999997763
No 391
>PRK10867 signal recognition particle protein; Provisional
Probab=97.58 E-value=0.00061 Score=73.92 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCCchhhhhhhhh
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
.++..|+++|.+|+||||++..|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3467899999999999998887764
No 392
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.57 E-value=0.00032 Score=69.30 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=41.1
Q ss_pred CeEEEEEeCCCccc------chhhHhhhcccCCeEEE---EeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009378 343 NYHVVVLDSPGHKD------FVPNMISGATQSDAAIL---VIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 343 ~~~i~LIDTPGh~d------f~~~~~~~l~~aD~~IL---VVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
...+.|+|+||+.+ -....++.+..-|.-+. ++|+- +-.+-..+.....-.+.-+..+..|+ |-|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~---ycs~p~~~iS~lL~sl~tMl~melph-VNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSH---YCSDPSKFISSLLVSLATMLHMELPH-VNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeece---eeCChHHHHHHHHHHHHHHHhhcccc-hhhhh
Confidence 46789999999544 34455556666554444 45543 11111112222233333344567785 78999
Q ss_pred cccccc
Q 009378 414 KMDAVQ 419 (536)
Q Consensus 414 KiDl~~ 419 (536)
|+|+..
T Consensus 172 K~Dl~~ 177 (290)
T KOG1533|consen 172 KADLLK 177 (290)
T ss_pred HhHHHH
Confidence 999874
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=97.57 E-value=7.9e-05 Score=79.19 Aligned_cols=60 Identities=27% Similarity=0.327 Sum_probs=41.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
.+++|||.+|+|||||||+|+...... .+..+..+.+|+|.......+.. ..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~-------------------------~~~~~~s~~pGTT~~~~~~~l~~---~~ 212 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE-------------------------KDVITTSRFPGTTLDKIEIPLDD---GS 212 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc-------------------------cceEEecCCCCccceeEEEEcCC---Cc
Confidence 469999999999999999998532100 01122345578888766555432 25
Q ss_pred EEEeCCCc
Q 009378 347 VVLDSPGH 354 (536)
Q Consensus 347 ~LIDTPGh 354 (536)
.|+||||.
T Consensus 213 ~l~DTPGi 220 (365)
T PRK13796 213 FLYDTPGI 220 (365)
T ss_pred EEEECCCc
Confidence 89999995
No 394
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.57 E-value=0.00011 Score=68.03 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhh
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
..+++++|.+|+|||||+++|.+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999984
No 395
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.55 E-value=2.8e-05 Score=50.61 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.4
Q ss_pred CceeecccccCCCCCccccccccCC
Q 009378 49 RVWSCAICTYDNEEGMSVCDICGVL 73 (536)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~ 73 (536)
|.|.|+.||+.|......|++|++.
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 4699999999999999999999985
No 396
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.53 E-value=0.00042 Score=72.42 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=45.9
Q ss_pred CCeEEEEEeCCCcccchhh--------HhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009378 342 KNYHVVVLDSPGHKDFVPN--------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~--------~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
......+|.|.|...=.+. .+......|.+|-||||.+... . ..........++... =+|++|
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~--~---~~~~~~~~~~Qia~A----D~ivlN 153 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE--G---LDAIAELAEDQLAFA----DVIVLN 153 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh--h---HHHHHHHHHHHHHhC----cEEEEe
Confidence 3467899999995442222 2223344788999999986410 0 000111222222222 278999
Q ss_pred cccccccchhHHHHHHHHHHHH
Q 009378 414 KMDAVQYSKDRFDSIKVQLGTF 435 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~ 435 (536)
|.|++.. +.++.+...++++
T Consensus 154 K~Dlv~~--~~l~~l~~~l~~l 173 (323)
T COG0523 154 KTDLVDA--EELEALEARLRKL 173 (323)
T ss_pred cccCCCH--HHHHHHHHHHHHh
Confidence 9999953 3455555444444
No 397
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.53 E-value=0.00019 Score=59.81 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=35.1
Q ss_pred eeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCCC
Q 009378 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTRF 534 (536)
Q Consensus 495 ~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~~ 534 (536)
|||+|.++|+.. .|.. ++|+|++|.|++||+|+++|.+.
T Consensus 1 lr~~V~dv~k~~~~~~~-v~Gkv~~G~v~~Gd~v~~~P~~~ 40 (81)
T cd03695 1 FRFPVQYVIRPNADFRG-YAGTIASGSIRVGDEVVVLPSGK 40 (81)
T ss_pred CEeeEEEEEeeCCCcEE-EEEEEccceEECCCEEEEcCCCC
Confidence 689999999976 6666 89999999999999999999864
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.52 E-value=0.00037 Score=71.66 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=52.8
Q ss_pred hcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCC
Q 009378 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (536)
Q Consensus 364 ~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~ 443 (536)
-+..+|.+|+|+|+..+.+. + ......+..+...++| +|+|+||+|+... ... ..........+
T Consensus 75 i~anvD~vllV~d~~~p~~s-----~-~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~--~~~----~~~~~~~~~~g--- 138 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFN-----P-RLLDRYLVAAEAAGIE-PVIVLTKADLLDD--EEE----ELELVEALALG--- 138 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCC-----H-HHHHHHHHHHHHcCCC-EEEEEEHHHCCCh--HHH----HHHHHHHHhCC---
Confidence 36779999999999876311 1 1233345556667887 8999999999742 111 11112222344
Q ss_pred CCccEEEEEcccCCCcccC
Q 009378 444 ASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 444 ~~i~vipvSA~~GenI~e~ 462 (536)
++++++||++|.|+.++
T Consensus 139 --~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 139 --YPVLAVSAKTGEGLDEL 155 (287)
T ss_pred --CeEEEEECCCCccHHHH
Confidence 37899999999999763
No 399
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.52 E-value=0.00023 Score=70.46 Aligned_cols=65 Identities=26% Similarity=0.451 Sum_probs=49.7
Q ss_pred CeEEEEEeCC-CcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 343 NYHVVVLDSP-GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 343 ~~~i~LIDTP-Gh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.+.++++||- |.+-|-.-+ ...+|.+|.|+|.+.. -....+...++..+++++++.+|+||+|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~--------sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYK--------SLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHH--------HHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3678999984 555554433 4569999999999854 235667778899999988899999999854
No 400
>PRK01889 GTPase RsgA; Reviewed
Probab=97.51 E-value=0.00046 Score=73.15 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=53.6
Q ss_pred cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCC
Q 009378 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (536)
Q Consensus 365 l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~ 444 (536)
+.++|.+++|+++... + + .......+.++...+++ .|||+||+|++.. .+...+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~-~----~--~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~----~~~~~~~~~~~--~~----- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-F----N--LRRIERYLALAWESGAE-PVIVLTKADLCED----AEEKIAEVEAL--AP----- 170 (356)
T ss_pred EEeCCEEEEEEecCCC-C----C--hhHHHHHHHHHHHcCCC-EEEEEEChhcCCC----HHHHHHHHHHh--CC-----
Confidence 5779999999999643 1 1 12556667778888998 5889999999842 11122223222 22
Q ss_pred CccEEEEEcccCCCccc
Q 009378 445 SLTWIPLSALENQNLVT 461 (536)
Q Consensus 445 ~i~vipvSA~~GenI~e 461 (536)
.+++|++|+++|.|+.+
T Consensus 171 g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 171 GVPVLAVSALDGEGLDV 187 (356)
T ss_pred CCcEEEEECCCCccHHH
Confidence 34789999999999976
No 401
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.49 E-value=0.00046 Score=74.76 Aligned_cols=65 Identities=23% Similarity=0.411 Sum_probs=39.2
Q ss_pred CCeEEEEEeCCCcccchhhHh------hhcccCCeEEEEeecCCCcccccccchhhHHHHHHH-HHHHcCCCcEEEEEec
Q 009378 342 KNYHVVVLDSPGHKDFVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFGVDQLIVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~------~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~-ll~~~~vp~vIVVINK 414 (536)
.++.++||||||....-..+. .....+|.++||+|+..+ ........ +...+++. =+|+||
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg----------q~~~~~a~~f~~~v~i~--giIlTK 248 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG----------QDAVNTAKTFNERLGLT--GVVLTK 248 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch----------HHHHHHHHHHHhhCCCC--EEEEeC
Confidence 457899999999543322221 223458899999999854 12222222 22344554 577999
Q ss_pred cccc
Q 009378 415 MDAV 418 (536)
Q Consensus 415 iDl~ 418 (536)
+|..
T Consensus 249 lD~~ 252 (428)
T TIGR00959 249 LDGD 252 (428)
T ss_pred ccCc
Confidence 9954
No 402
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00019 Score=77.41 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCeEEEEEeCCCcccchhh---Hh---hhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 342 KNYHVVVLDSPGHKDFVPN---MI---SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~---~~---~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.+..+.||||+|....... .+ .......-.+||++++.+ .....+.+.....+++. =+++||+
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~~~--~~I~TKl 336 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHGIH--GCIITKV 336 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCCCC--EEEEEee
Confidence 5678999999995442221 11 122234568899999864 23344445555556665 4789999
Q ss_pred cccc
Q 009378 416 DAVQ 419 (536)
Q Consensus 416 Dl~~ 419 (536)
|...
T Consensus 337 DEt~ 340 (420)
T PRK14721 337 DEAA 340 (420)
T ss_pred eCCC
Confidence 9874
No 403
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00079 Score=77.25 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.-.|+|||+.|+||||++..|.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 357899999999999999999854
No 404
>PRK12288 GTPase RsgA; Reviewed
Probab=97.46 E-value=0.00063 Score=71.89 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=51.8
Q ss_pred cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCC
Q 009378 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (536)
Q Consensus 365 l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~ 444 (536)
+.++|.+++|++.... + . + ......+.++...++| +|||+||+|+... .....+ ..+...++.+++
T Consensus 118 aANvD~vlIV~s~~p~-~--s---~-~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~--~~~~~~-~~~~~~y~~~g~--- 183 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-L--S---L-NIIDRYLVACETLGIE-PLIVLNKIDLLDD--EGRAFV-NEQLDIYRNIGY--- 183 (347)
T ss_pred EEEccEEEEEEeCCCC-C--C---H-HHHHHHHHHHHhcCCC-EEEEEECccCCCc--HHHHHH-HHHHHHHHhCCC---
Confidence 5679999999887532 1 1 1 2223334456667887 7899999999742 211122 222233444554
Q ss_pred CccEEEEEcccCCCccc
Q 009378 445 SLTWIPLSALENQNLVT 461 (536)
Q Consensus 445 ~i~vipvSA~~GenI~e 461 (536)
+++++||++|+|+.+
T Consensus 184 --~v~~vSA~tg~Gide 198 (347)
T PRK12288 184 --RVLMVSSHTGEGLEE 198 (347)
T ss_pred --eEEEEeCCCCcCHHH
Confidence 789999999999986
No 405
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00038 Score=74.49 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCcccch----hhHhhhccc--CC-eEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009378 342 KNYHVVVLDSPGHKDFV----PNMISGATQ--SD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~----~~~~~~l~~--aD-~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
.++.++||||||..... ..+...+.. .+ -.+||+||+.+ .....+.+.....+++. =+++||
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~---------~~~~~~~~~~~~~~~~~--~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK---------TSDVKEIFHQFSPFSYK--TVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC---------HHHHHHHHHHhcCCCCC--EEEEEe
Confidence 56789999999943321 222222221 23 58999999976 12333444444445555 478999
Q ss_pred ccccc
Q 009378 415 MDAVQ 419 (536)
Q Consensus 415 iDl~~ 419 (536)
+|-..
T Consensus 322 lDet~ 326 (388)
T PRK12723 322 LDETT 326 (388)
T ss_pred ccCCC
Confidence 99764
No 406
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.44 E-value=0.00018 Score=74.03 Aligned_cols=24 Identities=42% Similarity=0.407 Sum_probs=21.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
..++++|++|+|||||+|+|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 569999999999999999999643
No 407
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00011 Score=78.06 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCcccch----hhHhhh--cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 342 KNYHVVVLDSPGHKDFV----PNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~----~~~~~~--l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.++.++||||||..... ..+... ...++.++||+++... ..+..+.+.....+++. -+|+||+
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~---------~~d~~~i~~~f~~l~i~--glI~TKL 352 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK---------SADVMTILPKLAEIPID--GFIITKM 352 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc---------HHHHHHHHHhcCcCCCC--EEEEEcc
Confidence 35789999999964332 222221 2246788888887532 12333333333444554 5789999
Q ss_pred cccc
Q 009378 416 DAVQ 419 (536)
Q Consensus 416 Dl~~ 419 (536)
|...
T Consensus 353 DET~ 356 (407)
T PRK12726 353 DETT 356 (407)
T ss_pred cCCC
Confidence 9863
No 408
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00018 Score=77.37 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=42.8
Q ss_pred CCeEEEEEeCCCcccc----hhhHhhhcc-----cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEE
Q 009378 342 KNYHVVVLDSPGHKDF----VPNMISGAT-----QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df----~~~~~~~l~-----~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVI 412 (536)
.+..++||||||.... ...+...+. ...-.+||+|++.+ .....+.+.....+++. =+|+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~---------~~~~~~~~~~f~~~~~~--glIl 366 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS---------YHHTLTVLKAYESLNYR--RILL 366 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC---------HHHHHHHHHHhcCCCCC--EEEE
Confidence 4678999999996432 222221111 23468899999976 23455555555666776 4789
Q ss_pred ecccccc
Q 009378 413 NKMDAVQ 419 (536)
Q Consensus 413 NKiDl~~ 419 (536)
+|+|-..
T Consensus 367 TKLDEt~ 373 (432)
T PRK12724 367 TKLDEAD 373 (432)
T ss_pred EcccCCC
Confidence 9999764
No 409
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.00076 Score=73.96 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=58.5
Q ss_pred CCeEEEEEeCCCcccchh---hH---hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecc
Q 009378 342 KNYHVVVLDSPGHKDFVP---NM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~---~~---~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKi 415 (536)
.+..+.+|||+|...... .. +.......-.+||+|++.+ .....+.+......++. -+|+||+
T Consensus 333 ~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~---------~~~l~~i~~~f~~~~~~--g~IlTKl 401 (484)
T PRK06995 333 RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH---------GDTLNEVVQAYRGPGLA--GCILTKL 401 (484)
T ss_pred cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc---------HHHHHHHHHHhccCCCC--EEEEeCC
Confidence 456799999999332221 11 1111113337899999865 12334444444455554 4678999
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEcccCCCc-ccCCCCcccccccchhhHHHHHHhc
Q 009378 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL-VTAPDDGRLLSWYKGPCLLDAIDSL 484 (536)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI-~e~~~~~~~~~Wy~g~tLle~L~~l 484 (536)
|-...-. .+-.++...++ |+.+++ +|++| ++ ...+....|++.|...
T Consensus 402 Det~~~G--------~~l~i~~~~~l-----PI~yvt--~GQ~VPeD-------L~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 402 DEAASLG--------GALDVVIRYKL-----PLHYVS--NGQRVPED-------LHLANKKFLLHRAFCA 449 (484)
T ss_pred CCcccch--------HHHHHHHHHCC-----CeEEEe--cCCCChhh-------hccCCHHHHHHHHhcC
Confidence 9763211 12222222332 445543 57787 43 3344555677776543
No 410
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.42 E-value=0.00043 Score=75.07 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=79.9
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcccccc-cchhhhhHHHHhhhCCCccchhccccccc--------------------
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRIT-QKQMHKYEKEAKLQGKGSFAYAWALDESA-------------------- 323 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~~~i~-~~~~~~~~~~a~~~gkgs~~~~~~~d~~~-------------------- 323 (536)
.-++|+|||.-.+|||+.+..+.....-+. +..|.+..........|..+.+.+.|...
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 457899999999999999998864322111 11122222222222233333333222111
Q ss_pred --cccccceEEEEEEEEeecCC---eEEEEEeCCCcc-------------cchhhHhhhcccCCeEEEEeecCCCccccc
Q 009378 324 --EERERGITMTVAVAYFDSKN---YHVVVLDSPGHK-------------DFVPNMISGATQSDAAILVIDASVGSFEVG 385 (536)
Q Consensus 324 --~e~~~GiTi~~~~~~~~~~~---~~i~LIDTPGh~-------------df~~~~~~~l~~aD~~ILVVDas~g~~e~~ 385 (536)
.....|.|+....+.+..++ ..++++|.||.. ........++..++++||+|.-.. ..+.
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS--VDAE 464 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS--VDAE 464 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC--cchh
Confidence 01134556654444444332 568899999932 133444566788999999985321 1110
Q ss_pred ccchhhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 009378 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (536)
Q Consensus 386 ~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~ 420 (536)
....-.+...+.-.|.. .|+|++|+|+...
T Consensus 465 ----RSnVTDLVsq~DP~GrR-TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 ----RSIVTDLVSQMDPHGRR-TIFVLTKVDLAEK 494 (980)
T ss_pred ----hhhHHHHHHhcCCCCCe-eEEEEeecchhhh
Confidence 11222222333334554 8999999999853
No 411
>PRK13796 GTPase YqeH; Provisional
Probab=97.42 E-value=0.0006 Score=72.53 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=55.7
Q ss_pred hHhhhcccCC-eEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHH
Q 009378 360 NMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRS 438 (536)
Q Consensus 360 ~~~~~l~~aD-~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~ 438 (536)
.++..+...+ ++++|||+.+.. .....++..+. .+.| +|+|+||+|+... ....+++.+.+..+.+.
T Consensus 61 ~~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~--~~kp-viLViNK~DLl~~-~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 61 KLLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV--GNNP-VLLVGNKADLLPK-SVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh--CCCC-EEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence 3566667666 999999987531 12222222222 1344 8999999999742 22233444455556666
Q ss_pred cCCCCCCccEEEEEcccCCCcccC
Q 009378 439 CGFKDASLTWIPLSALENQNLVTA 462 (536)
Q Consensus 439 ~g~~~~~i~vipvSA~~GenI~e~ 462 (536)
.++... .++.+||++|.|+.++
T Consensus 129 ~g~~~~--~v~~vSAk~g~gI~eL 150 (365)
T PRK13796 129 LGLRPV--DVVLISAQKGHGIDEL 150 (365)
T ss_pred cCCCcC--cEEEEECCCCCCHHHH
Confidence 666322 5799999999999764
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.37 E-value=0.00095 Score=72.38 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=40.8
Q ss_pred CCeEEEEEeCCCcccch----hhHhhhcc---cCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEec
Q 009378 342 KNYHVVVLDSPGHKDFV----PNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~----~~~~~~l~---~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINK 414 (536)
....++||||||..... ..+...+. ...-++||++++.+ .....+.......+++. -|++||
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---------~~~l~~~~~~f~~~~~~--~vI~TK 366 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---------YEDLKDIYKHFSRLPLD--GLIFTK 366 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---------HHHHHHHHHHhCCCCCC--EEEEec
Confidence 35789999999964432 12222222 34567888998864 23444444555555543 488999
Q ss_pred ccccc
Q 009378 415 MDAVQ 419 (536)
Q Consensus 415 iDl~~ 419 (536)
+|...
T Consensus 367 lDet~ 371 (424)
T PRK05703 367 LDETS 371 (424)
T ss_pred ccccc
Confidence 99863
No 413
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.35 E-value=0.00022 Score=60.09 Aligned_cols=37 Identities=35% Similarity=0.532 Sum_probs=34.8
Q ss_pred eeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 495 ~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
|+|+|.++|+.+ .|++ ++|+|++|+|++||+|+++|.
T Consensus 1 ~r~~V~~v~~~~g~G~v-v~G~v~~G~v~~gd~v~~~p~ 38 (87)
T cd03697 1 FLMPIEDVFSIPGRGTV-VTGRIERGTIKVGDEVEIVGF 38 (87)
T ss_pred CEeeEEEEEeCCCcEEE-EEEEECCCCCccCCEEEEeCC
Confidence 689999999988 8988 899999999999999999996
No 414
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.32 E-value=0.0018 Score=60.58 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=45.7
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
.++|||||+.... .....+..+|.+|+|++..... .......+..+...+.+.+.+|+|+++..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s--------~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISS--------LRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcch--------HHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7999999985433 3445577899999999887542 23444555666666666678999999864
No 415
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.28 E-value=0.0012 Score=68.99 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
....+|.|.-|||||||+++|+..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 355778999999999999999854
No 416
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.26 E-value=0.0045 Score=56.53 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=43.2
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEeccccc
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINKiDl~ 418 (536)
+.++|||+|+... ......+..+|.+|+|++.+... ...+...+..+.. .+..++.+|+|+++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s--------~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTS--------ITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhH--------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 6799999998543 33345678899999999987431 1233444444433 2344588999999743
No 417
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.25 E-value=0.0018 Score=67.65 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=76.7
Q ss_pred EEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-------cC
Q 009378 332 MTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-------FG 404 (536)
Q Consensus 332 i~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-------~~ 404 (536)
..+....|..++..+.+||++|+......+...+..++++|||||.+.-.....-+.......+.+.++.. .+
T Consensus 149 ~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~ 228 (317)
T cd00066 149 TGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFAN 228 (317)
T ss_pred CCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccC
Confidence 33444456678899999999999999999999999999999999988521000000001122233332222 24
Q ss_pred CCcEEEEEeccccccc--------------c--hhHHHHHHHHHHHHHHHcCCC-CCCccEEEEEcccCCCcc
Q 009378 405 VDQLIVAVNKMDAVQY--------------S--KDRFDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLV 460 (536)
Q Consensus 405 vp~vIVVINKiDl~~~--------------~--~e~~eei~~~L~~~l~~~g~~-~~~i~vipvSA~~GenI~ 460 (536)
.| +||++||.|+... . ...++....-+...+....-. ...+-...++|..-+++.
T Consensus 229 ~p-ill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~ 300 (317)
T cd00066 229 TS-IILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIR 300 (317)
T ss_pred CC-EEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHH
Confidence 45 9999999996521 0 123344444444444433221 234555667887777765
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.25 E-value=0.0003 Score=72.07 Aligned_cols=65 Identities=28% Similarity=0.309 Sum_probs=46.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCC
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (536)
....+|.|+|-||+|||+|+|++........ .......++|+|..+.....-...
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-------------------------k~a~vG~~pGVT~~V~~~iri~~r 195 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKK-------------------------KAARVGAEPGVTRRVSERIRISHR 195 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhc-------------------------cceeccCCCCceeeehhheEeccC
Confidence 3568899999999999999999874332221 111233458898887764444456
Q ss_pred eEEEEEeCCC
Q 009378 344 YHVVVLDSPG 353 (536)
Q Consensus 344 ~~i~LIDTPG 353 (536)
..+.++||||
T Consensus 196 p~vy~iDTPG 205 (335)
T KOG2485|consen 196 PPVYLIDTPG 205 (335)
T ss_pred CceEEecCCC
Confidence 6799999999
No 419
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.25 E-value=0.0021 Score=67.75 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=19.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.-.+|.|-.|||||||+++|+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 45778999999999999999854
No 420
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.001 Score=66.04 Aligned_cols=152 Identities=21% Similarity=0.253 Sum_probs=94.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEE
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i 346 (536)
++|.++|.--+|||++-...++..... +..-.|....+|.+. +...-.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn--------------------------eTlflESTski~~d~----is~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN--------------------------ETLFLESTSKITRDH----ISNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC--------------------------ceeEeeccCcccHhh----hhhhhcce
Confidence 459999999999999988877543211 001111112222111 11122458
Q ss_pred EEEeCCCcccchhhH---hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCc---EEEEEeccccccc
Q 009378 347 VVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ---LIVAVNKMDAVQY 420 (536)
Q Consensus 347 ~LIDTPGh~df~~~~---~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~---vIVVINKiDl~~~ 420 (536)
.+||.||+.+|.... ..-.+++-++|+|||+-..- ....++-|+-..+...+.| +=|.+.|+|-+..
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-------~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-------MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHH-------HHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 899999988765443 22356789999999997531 2345555666666655432 6688999997632
Q ss_pred c--hhHHHHHHHHHHHHHHHcCCCCCCccEEEEEccc
Q 009378 421 S--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (536)
Q Consensus 421 ~--~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~ 455 (536)
. -+....|.++...-|...|...-.+.|.-+|...
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD 187 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence 1 2334456777777888888877667777777553
No 421
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.0007 Score=70.24 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.2
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcc
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
..++..|.+||-.|+||||-|..|.+..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 4568899999999999999999997553
No 422
>PRK00098 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.00036 Score=72.17 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
..++|+|++|+|||||+|+|++..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999998643
No 423
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.17 E-value=0.0036 Score=66.05 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=78.7
Q ss_pred EEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCc---ccccccchhhHHHHHHHHHHH----c
Q 009378 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVGMNTAKGLTREHAQLIRS----F 403 (536)
Q Consensus 331 Ti~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~---~e~~~~~~~~qt~e~l~ll~~----~ 403 (536)
|..+....+...+..+.+||.+|+......|...+..++++|||||.+.-. .+.............+..+.. .
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 334444556778889999999999999999999999999999999998521 000000011222222222221 2
Q ss_pred CCCcEEEEEeccccccc--------------c-hhHHHHHHHHHHHHHHHcCC--CCCCccEEEEEcccCCCccc
Q 009378 404 GVDQLIVAVNKMDAVQY--------------S-KDRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 404 ~vp~vIVVINKiDl~~~--------------~-~e~~eei~~~L~~~l~~~g~--~~~~i~vipvSA~~GenI~e 461 (536)
+.| +||++||.|+... . ...++...+-+...+....- ....+-...++|..-.++..
T Consensus 251 ~~p-iil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 251 NTS-IILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred CCc-EEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence 345 9999999997531 0 12334444444444444332 12345667788887777753
No 424
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.09 E-value=0.0036 Score=63.96 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCCcccchhhH--------hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEe
Q 009378 342 KNYHVVVLDSPGHKDFVPNM--------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~--------~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVIN 413 (536)
+.+..+++.|.|..+-.+.. +..--..|++|-||||.+..+.-+-....+..-|...++... . -+++|
T Consensus 144 GkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A--D--~II~N 219 (391)
T KOG2743|consen 144 GKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA--D--RIIMN 219 (391)
T ss_pred CCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh--h--eeeec
Confidence 45678899999966532221 222233799999999986532211111112222222222211 1 36789
Q ss_pred cccccccchhHHHHHHHHHHH
Q 009378 414 KMDAVQYSKDRFDSIKVQLGT 434 (536)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~ 434 (536)
|.|++. ++.+..+++.++.
T Consensus 220 KtDli~--~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 220 KTDLVS--EEEVKKLRQRIRS 238 (391)
T ss_pred cccccC--HHHHHHHHHHHHH
Confidence 999994 4555555555444
No 425
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0017 Score=68.30 Aligned_cols=102 Identities=25% Similarity=0.428 Sum_probs=57.7
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccc-------cccchhhhhHHHHhhhCCCccchhcccccccccc-ccceEEEE
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGR-------ITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER-ERGITMTV 334 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~-------i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~-~~GiTi~~ 334 (536)
..++-.|.+||--|+||||.+..|.+.... +..++ |+. -..|+....- ..++.+..
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT---------------FRa-gAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT---------------FRA-GAFDQLKQNATKARVPFYG 161 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc---------------ccc-chHHHHHHHhHhhCCeeEe
Confidence 345667899999999999999999754311 11111 111 1122222111 11222111
Q ss_pred EEE-------------EeecCCeEEEEEeCCCccc----chhhHh--hhcccCCeEEEEeecCCC
Q 009378 335 AVA-------------YFDSKNYHVVVLDSPGHKD----FVPNMI--SGATQSDAAILVIDASVG 380 (536)
Q Consensus 335 ~~~-------------~~~~~~~~i~LIDTPGh~d----f~~~~~--~~l~~aD~~ILVVDas~g 380 (536)
.+. .|..++..++|+||.|... +..++. ..+-.+|-+|||+||+.|
T Consensus 162 syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 162 SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG 226 (483)
T ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 111 1334678999999999333 233332 234458999999999966
No 426
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.05 E-value=0.0031 Score=54.98 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=43.0
Q ss_pred EEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCC---cEEEEEec
Q 009378 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNK 414 (536)
Q Consensus 345 ~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp---~vIVVINK 414 (536)
.++|+|||+.... .....+..+|.+|+|++.... -.......+..+++.+.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLP--------SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChH--------HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7999999996543 234466789999999988754 234566666667776654 68899986
No 427
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.0016 Score=69.73 Aligned_cols=144 Identities=23% Similarity=0.320 Sum_probs=70.4
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccch----hhhhHHHHhhhCCCccchhcccccccccccc-ce-EEEEEE
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQ----MHKYEKEAKLQGKGSFAYAWALDESAEERER-GI-TMTVAV 336 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~----~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~-Gi-Ti~~~~ 336 (536)
..++..|.++|--|+||||.+..|......-..+. ..+++..+.++=+. ..-....+.+...... -+ ....+.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~-La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQ-LAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHH-HHHHcCCceecCCCCCCHHHHHHHHH
Confidence 45678899999999999999999974432100000 01112222111100 0000001111100000 00 000001
Q ss_pred EEeecCCeEEEEEeCCCcccchhhH------hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEE
Q 009378 337 AYFDSKNYHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (536)
Q Consensus 337 ~~~~~~~~~i~LIDTPGh~df~~~~------~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIV 410 (536)
..+....+.++|+||.|....-..+ +...-.+|=+|||+|+..| +........+-..+++. =|
T Consensus 176 ~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---------QdA~~~A~aF~e~l~it--Gv 244 (451)
T COG0541 176 EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---------QDAVNTAKAFNEALGIT--GV 244 (451)
T ss_pred HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---------hHHHHHHHHHhhhcCCc--eE
Confidence 1123355789999999944333222 3344568999999999976 11111122223334554 47
Q ss_pred EEeccccc
Q 009378 411 AVNKMDAV 418 (536)
Q Consensus 411 VINKiDl~ 418 (536)
|++|+|--
T Consensus 245 IlTKlDGd 252 (451)
T COG0541 245 ILTKLDGD 252 (451)
T ss_pred EEEcccCC
Confidence 88999853
No 428
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.00 E-value=0.00073 Score=58.90 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhhh
Q 009378 267 LNLAIVGHVDSGKSTLSGRLL 287 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl 287 (536)
++|+++|..|+|||+|+.++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred CEEEEECCCChhHHHHHHHHh
Confidence 479999999999999999986
No 429
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.85 E-value=0.00091 Score=72.50 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=43.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeE
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (536)
.+.|++||-||+|||++||+|.+.+..-.+. ++|-|....++.++ ..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~------------------------------TPGkTKHFQTi~ls---~~ 360 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSS------------------------------TPGKTKHFQTIFLS---PS 360 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeec------------------------------CCCCcceeEEEEcC---CC
Confidence 6899999999999999999999766543333 25555444444432 35
Q ss_pred EEEEeCCC--cccchh
Q 009378 346 VVVLDSPG--HKDFVP 359 (536)
Q Consensus 346 i~LIDTPG--h~df~~ 359 (536)
+.|.|||| ...|..
T Consensus 361 v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 361 VCLCDCPGLVFPSFSP 376 (562)
T ss_pred ceecCCCCccccCCCc
Confidence 88999999 444543
No 430
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.0097 Score=61.92 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=42.0
Q ss_pred hhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC----------------CCcEEEEEecccccccchhHH
Q 009378 362 ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG----------------VDQLIVAVNKMDAVQYSKDRF 425 (536)
Q Consensus 362 ~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~----------------vp~vIVVINKiDl~~~~~e~~ 425 (536)
..-+..++.+|+|+|.-.. .+....++.+..+. .|++|+|-||.-.++..+...
T Consensus 293 AfLl~VcHivivV~d~~~d----------~~lir~L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~riDf~pr~r 362 (491)
T KOG4181|consen 293 AFLLSVCHIVIVVIDGLAD----------EQLIRLLNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHRIDFEPRQR 362 (491)
T ss_pred HHHHHHhhEEEEEecchhH----------HHHHHHHHHHHhhCcccCccccccccccccCcceEEEeccccccccChHHH
Confidence 3445669999999997532 23334444443321 367899999998776656556
Q ss_pred HHHHHHHHHHHHH
Q 009378 426 DSIKVQLGTFLRS 438 (536)
Q Consensus 426 eei~~~L~~~l~~ 438 (536)
+++-..+..++..
T Consensus 363 erl~~~~~~l~~~ 375 (491)
T KOG4181|consen 363 ERLDKKLAYLYGP 375 (491)
T ss_pred HHHHHHHHHHhcc
Confidence 6666666665543
No 431
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.0031 Score=63.75 Aligned_cols=140 Identities=19% Similarity=0.250 Sum_probs=78.3
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecC-
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (536)
.=.+||..||..|-|||||+..|++-........ ...+++........+...
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~---------------------------H~~~~V~L~~~TyelqEsn 92 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPST---------------------------HTLPNVKLQANTYELQESN 92 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCc---------------------------cCCCCceeecchhhhhhcC
Confidence 4468999999999999999999985332111100 001222222111112111
Q ss_pred -CeEEEEEeCCCccc-------------chhh--------------Hhhhc--ccCCeEEEEeecCCCcccccccchhhH
Q 009378 343 -NYHVVVLDSPGHKD-------------FVPN--------------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGL 392 (536)
Q Consensus 343 -~~~i~LIDTPGh~d-------------f~~~--------------~~~~l--~~aD~~ILVVDas~g~~e~~~~~~~~q 392 (536)
...++|+||.|..+ |+.. ++..+ ..++++++.|..+-- ++...
T Consensus 93 vrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-------~LKsl 165 (406)
T KOG3859|consen 93 VRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-------SLKSL 165 (406)
T ss_pred eeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-------chhHH
Confidence 35689999999332 1111 11111 237899999987632 23332
Q ss_pred HHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCC
Q 009378 393 TREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (536)
Q Consensus 393 t~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (536)
..-.+.-+.. .+. ||-||-|.|.+ +...+..++..+..-|...|.
T Consensus 166 DLvtmk~Lds-kVN-IIPvIAKaDti--sK~eL~~FK~kimsEL~sngv 210 (406)
T KOG3859|consen 166 DLVTMKKLDS-KVN-IIPVIAKADTI--SKEELKRFKIKIMSELVSNGV 210 (406)
T ss_pred HHHHHHHHhh-hhh-hHHHHHHhhhh--hHHHHHHHHHHHHHHHHhcCc
Confidence 2222222211 233 78889999988 566677777777777766664
No 432
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.71 E-value=0.0084 Score=61.77 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=58.9
Q ss_pred ccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHHHHHHHHHHHHcCCCCCC
Q 009378 366 TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445 (536)
Q Consensus 366 ~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~ 445 (536)
...|-+|+|+.+..+.+. ..+....+-++...++. .|||+||+|++.. +.... +++......+|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~------~~~ldR~Lv~ae~~gi~-pvIvlnK~DL~~~--~~~~~--~~~~~~y~~~gy---- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN------TNLLDRYLVLAEAGGIE-PVIVLNKIDLLDD--EEAAV--KELLREYEDIGY---- 142 (301)
T ss_pred cccceEEEEEeccCCCCC------HHHHHHHHHHHHHcCCc-EEEEEEccccCcc--hHHHH--HHHHHHHHhCCe----
Confidence 347888899998887542 24566677778888998 4788999999953 22222 455666667776
Q ss_pred ccEEEEEcccCCCccc
Q 009378 446 LTWIPLSALENQNLVT 461 (536)
Q Consensus 446 i~vipvSA~~GenI~e 461 (536)
+++.+|+++++|+.+
T Consensus 143 -~v~~~s~~~~~~~~~ 157 (301)
T COG1162 143 -PVLFVSAKNGDGLEE 157 (301)
T ss_pred -eEEEecCcCcccHHH
Confidence 789999999999986
No 433
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.57 E-value=0.0053 Score=74.64 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.9
Q ss_pred EEEEecCCCCchhhhhhh
Q 009378 269 LAIVGHVDSGKSTLSGRL 286 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrL 286 (536)
.+|+|++|+||||||.+-
T Consensus 114 YlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred EEEECCCCCchhHHHHhC
Confidence 789999999999999976
No 434
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.57 E-value=0.0013 Score=69.41 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=43.4
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeec
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (536)
.-++.++|+|+|-+|+||||+||+|....... ....+|+|......++
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~------------------------------vg~~pGvT~smqeV~L-- 295 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACN------------------------------VGNVPGVTRSMQEVKL-- 295 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhcccc------------------------------CCCCccchhhhhheec--
Confidence 34678999999999999999999998543321 1123677665544443
Q ss_pred CCeEEEEEeCCCc
Q 009378 342 KNYHVVVLDSPGH 354 (536)
Q Consensus 342 ~~~~i~LIDTPGh 354 (536)
+..|.|+|.||.
T Consensus 296 -dk~i~llDsPgi 307 (435)
T KOG2484|consen 296 -DKKIRLLDSPGI 307 (435)
T ss_pred -cCCceeccCCce
Confidence 456899999994
No 435
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.47 E-value=0.013 Score=48.34 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=45.7
Q ss_pred EEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEeecCCeEEEE
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~L 348 (536)
|++.|..|+||||+...|...... .|... ..++ .+.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v----~~~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRV----LLID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeE----EEEC----CEEE
Confidence 678899999999999999842211 11111 0111 7899
Q ss_pred EeCCCcccchhh-HhhhcccCCeEEEEeecCCC
Q 009378 349 LDSPGHKDFVPN-MISGATQSDAAILVIDASVG 380 (536)
Q Consensus 349 IDTPGh~df~~~-~~~~l~~aD~~ILVVDas~g 380 (536)
+|+|+....... ....+..+|.++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 999996543321 24456679999999988754
No 436
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.0017 Score=69.88 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhhcccc----cccchhhhhHHHHhhhCCCcc-chhccccccccccccceEEEEE-
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGR----ITQKQMHKYEKEAKLQGKGSF-AYAWALDESAEERERGITMTVA- 335 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~----i~~~~~~~~~~~a~~~gkgs~-~~~~~~d~~~~e~~~GiTi~~~- 335 (536)
..+++..|.+||-.|+||||-+-.|.+.... +-...-.+++.+++++=+... +++...+..-+--+.|.--+.+
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~ 453 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAG 453 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHH
Confidence 3468899999999999999998888644311 100001122333333221110 0000000000000001000000
Q ss_pred -----EEEeecCCeEEEEEeCCCcccchhhHh------hhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcC
Q 009378 336 -----VAYFDSKNYHVVVLDSPGHKDFVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 404 (536)
Q Consensus 336 -----~~~~~~~~~~i~LIDTPGh~df~~~~~------~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~ 404 (536)
..+....++.++||||+|...-...++ ..+..+|.+|+|=.|--|. ....|.+..-..+....
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~------dsv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN------DSVDQLKKFNRALADHS 527 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc------HHHHHHHHHHHHHhcCC
Confidence 001122578899999999443322222 2345699999998776652 12345666656666555
Q ss_pred CCcE--EEEEecccccc
Q 009378 405 VDQL--IVAVNKMDAVQ 419 (536)
Q Consensus 405 vp~v--IVVINKiDl~~ 419 (536)
.|+. -|+++|+|.++
T Consensus 528 ~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 528 TPRLIDGILLTKFDTVD 544 (587)
T ss_pred CccccceEEEEeccchh
Confidence 4443 47899999884
No 437
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.39 E-value=0.039 Score=61.00 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=80.5
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHhhhCCCccchhccccccccccccceEEEEEEEEee
Q 009378 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~~~gkgs~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (536)
...++-++.-++|..++|||.|++.+++..-.- ..........++.... ..
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~---------------------------~~~~~~~~~~avn~v~--~~ 470 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD---------------------------NNTGTTKPRYAVNSVE--VK 470 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhcccccc---------------------------ccccCCCCceeeeeee--ec
Confidence 344667899999999999999999999642211 0001111122222222 22
Q ss_pred cCCeEEEEEeCCCc-ccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH-cCCCcEEEEEeccccc
Q 009378 341 SKNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 341 ~~~~~i~LIDTPGh-~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~-~~vp~vIVVINKiDl~ 418 (536)
.....+.+-|.+-. .++...-. ..||++.+++|.+... -.....+...+... ..+| +++|..|+|+-
T Consensus 471 g~~k~LiL~ei~~~~~~~l~~ke---~~cDv~~~~YDsS~p~-------sf~~~a~v~~~~~~~~~~P-c~~va~K~dlD 539 (625)
T KOG1707|consen 471 GQQKYLILREIGEDDQDFLTSKE---AACDVACLVYDSSNPR-------SFEYLAEVYNKYFDLYKIP-CLMVATKADLD 539 (625)
T ss_pred cccceEEEeecCccccccccCcc---ceeeeEEEecccCCch-------HHHHHHHHHHHhhhccCCc-eEEEeeccccc
Confidence 33344555555532 11111111 5699999999988542 11223333332222 3455 99999999986
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCccEEEEEccc
Q 009378 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (536)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~vipvSA~~ 455 (536)
... ++..-+..++..++++..+ +.+|...
T Consensus 540 e~~----Q~~~iqpde~~~~~~i~~P----~~~S~~~ 568 (625)
T KOG1707|consen 540 EVP----QRYSIQPDEFCRQLGLPPP----IHISSKT 568 (625)
T ss_pred hhh----hccCCChHHHHHhcCCCCC----eeeccCC
Confidence 432 2222333666777777543 6666663
No 438
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.23 E-value=0.016 Score=62.37 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=26.8
Q ss_pred CCCcceeEEEEEecCCCCchhhhhhhhhccccc
Q 009378 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (536)
Q Consensus 261 ~~~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i 293 (536)
....-..+|+|+|+.++|||||+++|....+..
T Consensus 214 vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 214 VRPFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred HhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 344556789999999999999999998765443
No 439
>PRK13695 putative NTPase; Provisional
Probab=96.22 E-value=0.013 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.+|+|+|.+|+|||||+..|.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998644
No 440
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.22 E-value=0.0071 Score=57.57 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=32.6
Q ss_pred CeEEEEeecCCCcccccccchhhHHHHHHHH--HHHcCCCcEEEEEecccccccchhHHHHHHHHH
Q 009378 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQL--IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (536)
Q Consensus 369 D~~ILVVDas~g~~e~~~~~~~~qt~e~l~l--l~~~~vp~vIVVINKiDl~~~~~e~~eei~~~L 432 (536)
|++|+|+|+..+. .....+...+ +...+.| +|+|+||+|+++ ++.+..+.+.+
T Consensus 1 DvVl~VvDar~p~--------~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~--~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPL--------GCRCPQVEEAVLQAGGNKK-LVLVLNKIDLVP--KENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCC--------CCCCHHHHHHHHhccCCCC-EEEEEehhhcCC--HHHHHHHHHHH
Confidence 7899999998752 2222333333 3334555 999999999973 44443343333
No 441
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.15 E-value=0.021 Score=48.82 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=25.8
Q ss_pred eEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCC
Q 009378 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV 379 (536)
Q Consensus 344 ~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~ 379 (536)
+.++|||+|+..... ....+..+|.+|++++...
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP 73 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH
Confidence 679999999964332 2356677999999998874
No 442
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=95.99 E-value=0.02 Score=50.55 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=36.4
Q ss_pred CCCCeeEEEEEEEEeC---------CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 491 FSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 491 ~~~P~~~~I~d~~~~~---------~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
.++|++|.|.++|.++ .|.| +.|+|.+|.|++||.|-+-|.
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgV-igGsi~~G~lkvgdeIEIrpg 51 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGV-AGGSLLQGVLKVGDEIEIRPG 51 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeE-EEEEEEEEEEeCCCEEEEeec
Confidence 5689999999999764 6778 899999999999999999886
No 443
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.028 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhh
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
+..++|.|.|+||+|||||+.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3468899999999999999999974
No 444
>PRK01889 GTPase RsgA; Reviewed
Probab=95.62 E-value=0.0093 Score=63.29 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhcc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
-+++|+|.+|+|||||+|.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 469999999999999999999643
No 445
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.48 E-value=0.098 Score=55.26 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=78.7
Q ss_pred EEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCccccccc-chhhHHHHHHHHHHHc------
Q 009378 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN-TAKGLTREHAQLIRSF------ 403 (536)
Q Consensus 331 Ti~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~-~~~~qt~e~l~ll~~~------ 403 (536)
|..+....|..++..+.++|.+|+..-.+.|+.....++++|||++.+.-.. ..++ .......+.+.+....
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq-~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQ-VLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhh-hcccccchhHHHHHHHHHHHHhcCccc
Confidence 4455666788899999999999999888888889999999999999874210 0000 0112233333333332
Q ss_pred -CCCcEEEEEeccccccc--------------c-hhHHHHHHHHHHHHHHHcCCCC-CCccEEEEEcccCCCcc
Q 009378 404 -GVDQLIVAVNKMDAVQY--------------S-KDRFDSIKVQLGTFLRSCGFKD-ASLTWIPLSALENQNLV 460 (536)
Q Consensus 404 -~vp~vIVVINKiDl~~~--------------~-~e~~eei~~~L~~~l~~~g~~~-~~i~vipvSA~~GenI~ 460 (536)
.. .+|+.+||.|+... . ...+++....+...++.+.... ..+-...+.|..-.+|.
T Consensus 261 ~~t-siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~ 333 (354)
T KOG0082|consen 261 ANT-SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQ 333 (354)
T ss_pred ccC-cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHH
Confidence 23 49999999998531 0 1233444444444444443333 34444555777666665
No 446
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.45 E-value=0.022 Score=60.42 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=50.4
Q ss_pred eCCC-cccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHHHH
Q 009378 350 DSPG-HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSI 428 (536)
Q Consensus 350 DTPG-h~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~eei 428 (536)
|-++ ...|......-+..+|++|.|+||..+.. .-..+..+.+ +...|.+++|+|+||+|++ +.+.++.+
T Consensus 128 ~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlg-----tR~~~vE~~V--~~~~gnKkLILVLNK~DLV--PrEv~e~W 198 (435)
T KOG2484|consen 128 DNEESKKAYDKEFRKVVEASDVVLEVLDARDPLG-----TRCPEVEEAV--LQAHGNKKLILVLNKIDLV--PREVVEKW 198 (435)
T ss_pred cchhhHHHHHHHHHHHHhhhheEEEeeeccCCCC-----CCChhHHHHH--HhccCCceEEEEeehhccC--CHHHHHHH
Confidence 3344 33466777777788999999999998731 1122333332 2234546699999999999 55666666
Q ss_pred HHHHHHHH
Q 009378 429 KVQLGTFL 436 (536)
Q Consensus 429 ~~~L~~~l 436 (536)
...|+..+
T Consensus 199 l~YLr~~~ 206 (435)
T KOG2484|consen 199 LVYLRREG 206 (435)
T ss_pred HHHHHhhC
Confidence 66555543
No 447
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.37 E-value=0.041 Score=43.58 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=32.3
Q ss_pred eeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEec
Q 009378 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFL 531 (536)
Q Consensus 495 ~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p 531 (536)
+++.|.+++..+ .|.+ +.|+|.+|+|++|+.+.+.|
T Consensus 1 ~~~~v~~~~~~~~~g~v-~~~rv~~G~l~~g~~v~~~~ 37 (83)
T cd01342 1 LRALVFKVFKDKGRGTV-ATGRVESGTLKKGDKVRVGP 37 (83)
T ss_pred CeeEEEEEEEeCCceEE-EEEEEeeCEEecCCEEEEec
Confidence 467899999888 7887 79999999999999999998
No 448
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.25 E-value=0.069 Score=57.21 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=57.5
Q ss_pred EEEEEEEEeec-CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccc-hhhHHHHHHHHHHH------
Q 009378 331 TMTVAVAYFDS-KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT-AKGLTREHAQLIRS------ 402 (536)
Q Consensus 331 Ti~~~~~~~~~-~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~-~~~qt~e~l~ll~~------ 402 (536)
|..+....|.. .+..+.|+|+.|+..-.+.|+..+..++++|||++.+.-. +...+. -.....+.+.+...
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd-q~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD-QTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG-SBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchh-hhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 44455556777 8999999999999988899999999999999999987421 000110 01223333443333
Q ss_pred cCCCcEEEEEeccccc
Q 009378 403 FGVDQLIVAVNKMDAV 418 (536)
Q Consensus 403 ~~vp~vIVVINKiDl~ 418 (536)
+...++||++||+|+.
T Consensus 301 ~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLF 316 (389)
T ss_dssp GTTSEEEEEEE-HHHH
T ss_pred cccCceEEeeecHHHH
Confidence 2223599999999975
No 449
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=95.22 E-value=0.011 Score=55.94 Aligned_cols=29 Identities=28% Similarity=0.793 Sum_probs=25.8
Q ss_pred CCCceeecccccCCCCCccccccccCCCC
Q 009378 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (536)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (536)
--|.|-|+.|||-|+....-|-||+|...
T Consensus 21 Deg~WdCsvCTFrNsAeAfkC~vCdvRKG 49 (228)
T KOG4477|consen 21 DEGKWDCSVCTFRNSAEAFKCFVCDVRKG 49 (228)
T ss_pred ccCceeeeeeeecchhhhhheeeeccccc
Confidence 44679999999999999999999999763
No 450
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.21 E-value=0.082 Score=41.27 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=26.1
Q ss_pred hhhccc-CCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccc
Q 009378 362 ISGATQ-SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (536)
Q Consensus 362 ~~~l~~-aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiD 416 (536)
+.+++. .++++|++|.+.. +|. .+..|..-..++-..+..+|+|+|+||+|
T Consensus 7 i~AL~hL~~~ilfi~D~Se~---CGy-sie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 7 ITALAHLADAILFIIDPSEQ---CGY-SIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHGGGGT-SEEEEEE-TT-T---TSS--HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHhhcceEEEEEcCCCC---CCC-CHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 344433 7899999999853 222 23344433334444453344999999998
No 451
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.17 E-value=0.078 Score=53.51 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=38.7
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHH----HcCCCcEEEEEecccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDA 417 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~----~~~vp~vIVVINKiDl 417 (536)
.+.++||||||..... .+...+..+|.+|+++...... + ......+..+. ..+++.+.+|+|+++.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~-------l-~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDS-------I-FAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCccc-------H-HHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5789999999854321 1223467799999998876431 1 12222222222 2345434578999984
No 452
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.13 E-value=0.0064 Score=64.19 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=25.0
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcc
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.++++.|+++|-+|+|||++||.|-...
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~Kk 331 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKK 331 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcc
Confidence 5788999999999999999999997543
No 453
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.045 Score=65.72 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=16.3
Q ss_pred EEEEecCCCCchhhhhhhh
Q 009378 269 LAIVGHVDSGKSTLSGRLL 287 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl 287 (536)
-+|||++|+||||++...-
T Consensus 128 y~viG~pgsGKTtal~~sg 146 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG 146 (1188)
T ss_pred eEEecCCCCCcchHHhccc
Confidence 6799999999999987653
No 454
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.98 E-value=0.016 Score=50.84 Aligned_cols=24 Identities=46% Similarity=0.487 Sum_probs=20.9
Q ss_pred EEEEEecCCCCchhhhhhhhhccc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.|+|+|.+|||||||.+.|....+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999986543
No 455
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=94.85 E-value=0.069 Score=44.50 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=32.3
Q ss_pred eeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 495 ~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
|++.|+++...+ .|.+ +.+||++|+|++||+|++...
T Consensus 1 ~~~~vfk~~~d~~~g~i-~~~Rv~sG~l~~g~~v~~~~~ 38 (86)
T cd03691 1 LQMLVTTLDYDDYVGRI-AIGRIFRGTVKVGQQVAVVKR 38 (86)
T ss_pred CeEEEEEeEecCCCCeE-EEEEEEeCEEcCCCEEEEEcC
Confidence 578899999888 8888 799999999999999987543
No 456
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=94.84 E-value=0.065 Score=44.90 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=34.1
Q ss_pred CCCeeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEe
Q 009378 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNF 530 (536)
Q Consensus 492 ~~P~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~ 530 (536)
+.||.+.|+.+...+ .|.+ +.+||++|+|+.|+.|.+.
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~l-a~~RV~sG~l~~g~~v~~~ 39 (85)
T cd03690 1 ESELSGTVFKIERDDKGERL-AYLRLYSGTLRLRDSVRVN 39 (85)
T ss_pred CCCcEEEEEEeEECCCCCeE-EEEEEccCEEcCCCEEEeC
Confidence 368999999999999 8998 7999999999999999754
No 457
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=94.80 E-value=0.093 Score=43.91 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.0
Q ss_pred EEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecCC
Q 009378 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLTR 533 (536)
Q Consensus 497 ~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~~ 533 (536)
..|.++|+.. .|.+ +.|+|.+|.|++|++|+++|.+
T Consensus 3 ~~V~~vf~~~~~g~v-ag~kV~~G~l~~g~~v~vlr~~ 39 (84)
T cd03692 3 AEVRAVFKISKVGNI-AGCYVTDGKIKRNAKVRVLRNG 39 (84)
T ss_pred EEEEEEEECCCCcEE-EEEEEEECEEeCCCEEEEEcCC
Confidence 4678888877 7887 8999999999999999999986
No 458
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=94.47 E-value=0.096 Score=52.22 Aligned_cols=68 Identities=10% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH--cCCCcEEEEEeccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMD 416 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~--~~vp~vIVVINKiD 416 (536)
..+.++||||||+.. ..+...+..+|.+|+.+..+.-. +................ .+++ ..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d----~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLD----IDEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHH----HHHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 468899999999764 33455677899999888776421 11111111222222221 2555 679999986
No 459
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.46 E-value=0.087 Score=57.61 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=52.0
Q ss_pred cchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCC-CcEEEEEecccccccchhHHHHHHHHHHH
Q 009378 356 DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNKMDAVQYSKDRFDSIKVQLGT 434 (536)
Q Consensus 356 df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~v-p~vIVVINKiDl~~~~~e~~eei~~~L~~ 434 (536)
++...+++-+..+|++|.+|||..+.+.- ..... ..+....- +..+|++||.||+. ++.. .....
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr-----~~dLe---~Yvke~d~~K~~~LLvNKaDLl~--~~qr----~aWa~ 228 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFR-----SPDLE---DYVKEVDPSKANVLLVNKADLLP--PEQR----VAWAE 228 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccC-----ChhHH---HHHhccccccceEEEEehhhcCC--HHHH----HHHHH
Confidence 34566778888999999999999875321 11222 22233222 34799999999994 3333 33444
Q ss_pred HHHHcCCCCCCccEEEEEccc
Q 009378 435 FLRSCGFKDASLTWIPLSALE 455 (536)
Q Consensus 435 ~l~~~g~~~~~i~vipvSA~~ 455 (536)
++... +|+|+..||+.
T Consensus 229 YF~~~-----ni~~vf~SA~~ 244 (562)
T KOG1424|consen 229 YFRQN-----NIPVVFFSALA 244 (562)
T ss_pred HHHhc-----CceEEEEeccc
Confidence 54443 36889999987
No 460
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.27 E-value=0.11 Score=52.30 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHH----cCCCcEEEEEecccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDA 417 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~----~~vp~vIVVINKiDl 417 (536)
..+.++||||||...... +...+..+|.+|+++..... .+ ......+..+.+ .+++.+.||+|+++.
T Consensus 114 ~~yD~ViID~~~~~~~~~-~~~~l~aAD~vlip~~~~~~-------sl-~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCGG-FATPLQYADYALVVAANDFD-------AL-FAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccCc-cccchhhcCEEEEEecCchh-------HH-HHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 458899999998532111 12346679999998766422 01 122233333322 345535688999875
No 461
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.21 E-value=0.031 Score=50.06 Aligned_cols=22 Identities=55% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.++|+|+.|+|||||++.|.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5999999999999999999854
No 462
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.17 E-value=0.033 Score=44.21 Aligned_cols=21 Identities=38% Similarity=0.316 Sum_probs=19.1
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009378 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
..+|.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999973
No 463
>PRK08233 hypothetical protein; Provisional
Probab=94.12 E-value=0.033 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.5
Q ss_pred ceeEEEEEecCCCCchhhhhhhhhcc
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
+.+.|+|.|.+|+|||||..+|....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 35779999999999999999998654
No 464
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.11 E-value=0.03 Score=50.34 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhhhhhhhhccc
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
|+++|.+|+|||||+.+|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999985544
No 465
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.03 Score=53.65 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.+|+|+|++||||||+..+|....+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999986643
No 466
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=94.06 E-value=0.052 Score=43.68 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.5
Q ss_pred CeEEEEEEEEeeEEecCCEEEEecC
Q 009378 508 GQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 508 G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
|.+ +.|||++|+|++||+|+++|.
T Consensus 1 G~v-~~grV~sG~l~~gd~v~~~~~ 24 (74)
T PF03144_consen 1 GRV-ATGRVYSGTLKKGDKVRVLPN 24 (74)
T ss_dssp EEE-EEEEEEESEEETTEEEEEEST
T ss_pred CEE-EEEEEEEeEEcCCCEEEECcc
Confidence 556 799999999999999999884
No 467
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.04 E-value=0.018 Score=65.74 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=79.8
Q ss_pred CcceeEEEEEecCCCCchhhhhhhhhcccccccchhhhhHHHHh---hhCCCccchhccc---------ccc--------
Q 009378 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAK---LQGKGSFAYAWAL---------DES-------- 322 (536)
Q Consensus 263 ~~~~i~IaIvG~~gsGKSTLInrLl~~~~~i~~~~~~~~~~~a~---~~gkgs~~~~~~~---------d~~-------- 322 (536)
...-+.|+|||..++|||+.++.|.+....+....+.+...... ....+..-++++. |..
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 34567899999999999999999998644332222211111000 0000000011111 110
Q ss_pred cccc----ccceEEE-EEEEEeecCCeEEEEEeCCCccc-------------chhhHhhhcccCCeEEEEeecCCCcccc
Q 009378 323 AEER----ERGITMT-VAVAYFDSKNYHVVVLDSPGHKD-------------FVPNMISGATQSDAAILVIDASVGSFEV 384 (536)
Q Consensus 323 ~~e~----~~GiTi~-~~~~~~~~~~~~i~LIDTPGh~d-------------f~~~~~~~l~~aD~~ILVVDas~g~~e~ 384 (536)
..++ ..|+.-. +....+...-..++++|+||... ...+...++.....+|+.|....-
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~---- 181 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANS---- 181 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhh----
Confidence 0000 1222211 22222333456799999999322 334456677788888888876532
Q ss_pred cccchhhHHHHHHHHHHHcCC--CcEEEEEeccccccc
Q 009378 385 GMNTAKGLTREHAQLIRSFGV--DQLIVAVNKMDAVQY 420 (536)
Q Consensus 385 ~~~~~~~qt~e~l~ll~~~~v--p~vIVVINKiDl~~~ 420 (536)
.-.+.+.+.++++... .+.|.|++|.|+.+.
T Consensus 182 -----d~ats~alkiarevDp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 182 -----DIATSPALVVAREVDPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred -----hhhcCHHHHHHHhhCCCccchhHHhhhHHhhhc
Confidence 2245566677777532 347888889888753
No 468
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.03 E-value=0.19 Score=51.76 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=38.3
Q ss_pred CeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc----CCCcEEEEEeccc
Q 009378 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMD 416 (536)
Q Consensus 343 ~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~----~vp~vIVVINKiD 416 (536)
.+.++||||||.... ..+...+..+|.+|+++...... + ......+..++.. +++...+++|+.+
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~s-------l-~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDA-------L-FAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHH-------H-HHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 578999999986322 11224467799999999876421 1 1222333333332 3443458899987
No 469
>PRK08118 topology modulation protein; Reviewed
Probab=93.82 E-value=0.038 Score=52.23 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
.+|+|+|++|+|||||...|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999985543
No 470
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.79 E-value=0.16 Score=53.20 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=57.3
Q ss_pred EEeCCCccc-chhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEecccccccchhHHH
Q 009378 348 VLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (536)
Q Consensus 348 LIDTPGh~d-f~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~~~~~e~~e 426 (536)
+-+.|||.. +.......+..+|++|.|+||..+. ......+-.++ +.++.++|+||+|++. ....+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~--------~s~~~~l~~~v---~~k~~i~vlNK~DL~~--~~~~~ 80 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPL--------GTRNPELERIV---KEKPKLLVLNKADLAP--KEVTK 80 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccc--------cccCccHHHHH---ccCCcEEEEehhhcCC--HHHHH
Confidence 445688754 5566677788899999999999762 11222222222 2233599999999984 33333
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcccCCCccc
Q 009378 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (536)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~vipvSA~~GenI~e 461 (536)
++ ..++.... .+..+.+++..+.+...
T Consensus 81 ~W----~~~~~~~~----~~~~~~v~~~~~~~~~~ 107 (322)
T COG1161 81 KW----KKYFKKEE----GIKPIFVSAKSRQGGKK 107 (322)
T ss_pred HH----HHHHHhcC----CCccEEEEeecccCccc
Confidence 33 33333321 22458899998888765
No 471
>PRK07261 topology modulation protein; Provisional
Probab=93.75 E-value=0.037 Score=52.41 Aligned_cols=21 Identities=48% Similarity=0.626 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009378 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999873
No 472
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.74 E-value=0.028 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=17.9
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
||+|+|.+++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 473
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.71 E-value=0.054 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCcceeEEEEEecCCCCchhhhhhhhh
Q 009378 262 DRMTQLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 262 ~~~~~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
+..+...|+|+|++|+|||||+++|..
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 445667789999999999999999974
No 474
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.63 E-value=0.24 Score=44.68 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEecCCCCchhhhhhhhhc
Q 009378 269 LAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~ 289 (536)
++|.|.+|+|||||+..|+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999854
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.60 E-value=0.041 Score=52.63 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhh
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
.+--.++|+|+.|+|||||++.++.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3345699999999999999998864
No 476
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.56 E-value=0.1 Score=55.73 Aligned_cols=28 Identities=43% Similarity=0.313 Sum_probs=23.5
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhccc
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
...-+|+|+|+.++|||||...|++...
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l 98 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLL 98 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHh
Confidence 4567899999999999999998876543
No 477
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.55 E-value=0.21 Score=50.13 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCeEEEEEeCCCcccchhh-HhhhcccCCeEEEEeecCC
Q 009378 342 KNYHVVVLDSPGHKDFVPN-MISGATQSDAAILVIDASV 379 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~-~~~~l~~aD~~ILVVDas~ 379 (536)
..+.++||||||....... ....+..+|.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 4578999999986432111 1112235999999998764
No 478
>PRK14530 adenylate kinase; Provisional
Probab=93.48 E-value=0.045 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.3
Q ss_pred eeEEEEEecCCCCchhhhhhhhhccc
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
..+|+|+|.+|+||||+...|....+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976554
No 479
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.43 E-value=0.054 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.7
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.+++.|+|.|.+|+|||||++.|....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999998654
No 480
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.39 E-value=0.057 Score=52.52 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.1
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.+...|+|+|++|+|||||+++|.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445779999999999999999998653
No 481
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.35 E-value=0.049 Score=43.65 Aligned_cols=20 Identities=45% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEEecCCCCchhhhhhhhh
Q 009378 269 LAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~ 288 (536)
|+|+|.+|+||||+.++|..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999983
No 482
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=93.32 E-value=0.21 Score=41.75 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=31.8
Q ss_pred eeEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 495 ~~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
|.+.|+.+...+ .|.+ +.+||++|+|++||.|.+...
T Consensus 1 ~~~~Vfk~~~d~~~G~i-~~~Rv~sG~l~~~~~v~~~~~ 38 (86)
T cd03699 1 LRALIFDSWYDPYRGVI-ALVRVFDGTLKKGDKIRFMST 38 (86)
T ss_pred CEEEEEEeeccCCCCEE-EEEEEEcCEEcCCCEEEEecC
Confidence 467888888888 8988 799999999999999987653
No 483
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.26 E-value=0.045 Score=54.42 Aligned_cols=21 Identities=52% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 009378 268 NLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~ 288 (536)
-|+|+|+.|+|||||++.|-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999998864
No 484
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.23 E-value=0.057 Score=46.67 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
..++|+|++|+|||||+..|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46899999999999999999854
No 485
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.22 E-value=0.054 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEecCCCCchhhhhhhhhc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~ 289 (536)
.|+|+|+.|+|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999843
No 486
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=93.21 E-value=0.29 Score=49.56 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=66.7
Q ss_pred EEEEEEEEeecCCeEEEEEeCCCcccchhhHhhhcccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHc------C
Q 009378 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------G 404 (536)
Q Consensus 331 Ti~~~~~~~~~~~~~i~LIDTPGh~df~~~~~~~l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~------~ 404 (536)
|..+-...|..+..++..+|..|+.+-...++.....+-++|||+.++.-..--.-+.-+.-.+|.+.+.+.. .
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 3334444566678889999999999999999999999999999999875210000011123445555555542 1
Q ss_pred CCcEEEEEecccccccchhHHHHHHHHHHHHHHH
Q 009378 405 VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRS 438 (536)
Q Consensus 405 vp~vIVVINKiDl~~~~~e~~eei~~~L~~~l~~ 438 (536)
.-.+|+.+||-|+.. +.+..-+..+..++..
T Consensus 269 tisvIlFLNKqDlla---eKi~Agk~~i~dyFpE 299 (379)
T KOG0099|consen 269 TISVILFLNKQDLLA---EKILAGKSKIEDYFPE 299 (379)
T ss_pred hhheeEEecHHHHHH---HHHHcchhhHHHhChH
Confidence 123899999999873 2333333445555544
No 487
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.15 E-value=0.055 Score=47.33 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhhhhhhhhcc
Q 009378 269 LAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~~ 290 (536)
|+|.|.+|+|||||+..|....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998553
No 488
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.09 E-value=0.055 Score=54.18 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=33.9
Q ss_pred cCcccccCCCCcCCCcceeEEEEEecCCCCchhhhhhhhhc
Q 009378 249 YKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
...+.|.++..+..-.+-=+|+|+|+.|||||||++.|.+.
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc
Confidence 45567777777777777778999999999999999988754
No 489
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.05 E-value=0.54 Score=50.81 Aligned_cols=27 Identities=41% Similarity=0.336 Sum_probs=23.0
Q ss_pred cceeEEEEEecCCCCchhhhhhhhhcc
Q 009378 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 264 ~~~i~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
...-+|+|||+.|+|||||+..|++..
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCC
Confidence 334589999999999999999998754
No 490
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.00 E-value=0.059 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
-+|+|+|+.|+|||||+|.+.+-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 35999999999999999988753
No 491
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.99 E-value=0.12 Score=52.25 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCCchhhhhhhhh
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
..-+|+|.|.+|+||||++++|+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhh
Confidence 357899999999999999999984
No 492
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.85 E-value=0.057 Score=54.20 Aligned_cols=21 Identities=43% Similarity=0.450 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhhhhhhhhc
Q 009378 269 LAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 269 IaIvG~~gsGKSTLInrLl~~ 289 (536)
|+|+|++|+|||||++.+.+.
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999864
No 493
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.79 E-value=0.068 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCCchhhhhhhhh
Q 009378 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 265 ~~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
+...|+|+|..|+|||||+.+|+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 455799999999999999999984
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.78 E-value=0.068 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.4
Q ss_pred EEEEEecCCCCchhhhhhhhhcc
Q 009378 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (536)
Q Consensus 268 ~IaIvG~~gsGKSTLInrLl~~~ 290 (536)
.|+|+|+.|+|||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997543
No 495
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.78 E-value=0.066 Score=51.26 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCCchhhhhhhhh
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
.-+|+|+|++|+|||||+++|++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999999984
No 496
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.72 E-value=0.18 Score=52.24 Aligned_cols=23 Identities=43% Similarity=0.626 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCCchhhhhhhhh
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~ 288 (536)
..+|+|+|.+|+|||||+++|+.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLA 154 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 497
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.69 E-value=0.42 Score=44.69 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCeEEEEEeCCCcccchhhHhhh--cccCCeEEEEeecCCCcccccccchhhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 009378 342 KNYHVVVLDSPGHKDFVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (536)
Q Consensus 342 ~~~~i~LIDTPGh~df~~~~~~~--l~~aD~~ILVVDas~g~~e~~~~~~~~qt~e~l~ll~~~~vp~vIVVINKiDl~ 418 (536)
..+.++|+|||+... ...... +..+|.+|+|+..... -.......+..+++.+.+.+-+|+|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~--------s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEV--------ALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchh--------hHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 467899999999632 222222 2578999999987643 245677788888888888667899999854
No 498
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.68 E-value=0.074 Score=50.15 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhccc
Q 009378 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (536)
Q Consensus 267 i~IaIvG~~gsGKSTLInrLl~~~~ 291 (536)
..|+|+|.+|+|||||+.+|....+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999985443
No 499
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.60 E-value=0.071 Score=51.68 Aligned_cols=24 Identities=46% Similarity=0.275 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCCchhhhhhhhhc
Q 009378 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (536)
Q Consensus 266 ~i~IaIvG~~gsGKSTLInrLl~~ 289 (536)
--.++|+|+.|+|||||++.|.+.
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345999999999999999999864
No 500
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=92.59 E-value=0.24 Score=41.05 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=30.0
Q ss_pred eEEEEEEEEeC-CCeEEEEEEEEeeEEecCCEEEEecC
Q 009378 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVCNFLT 532 (536)
Q Consensus 496 ~~~I~d~~~~~-~G~v~v~G~V~sG~Lk~gd~v~v~p~ 532 (536)
...|++++..+ .|.+ +.+||++|+|++||.|.+...
T Consensus 2 ~a~VfK~~~d~~~g~i-~~~Ri~sGtl~~g~~v~~~~~ 38 (83)
T cd04092 2 CALAFKVVHDPQRGPL-TFVRVYSGTLKRGSALYNTNT 38 (83)
T ss_pred EEEEEecccCCCCCeE-EEEEEecCEECCCCEEEECCC
Confidence 45677888777 8888 789999999999999987643
Done!