Your job contains 1 sequence.
>009379
MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNV
RFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLV
EVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQM
KADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAY
AIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDPAEFGLE
KIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSH
PKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQFPQKPIDNLGSGTRESFRSEPQFP
SQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSDVPNTRASSYGIFSNPTA
NAPTGQGMAADRTKEGIPTQGTAGVRPNQNSPGLKSDGSQTPGPDNGQRKFGIFSR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009379
(536 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2036309 - symbol:AT1G34360 species:3702 "Arabi... 489 1.1e-50 2
TIGR_CMR|SPO_2638 - symbol:SPO_2638 "translation initiati... 237 2.9e-19 1
TIGR_CMR|GSU_1516 - symbol:GSU_1516 "translation initiati... 223 9.7e-18 1
TIGR_CMR|BA_4819 - symbol:BA_4819 "translation initiation... 220 2.1e-17 1
TIGR_CMR|CHY_1578 - symbol:CHY_1578 "translation initiati... 219 2.7e-17 1
TIGR_CMR|CJE_0200 - symbol:CJE_0200 "translation initiati... 217 4.4e-17 1
UNIPROTKB|P0A707 - symbol:infC "protein chain initiation ... 213 1.2e-16 1
TIGR_CMR|APH_1263 - symbol:APH_1263 "translation initiati... 209 3.2e-16 1
UNIPROTKB|P65144 - symbol:infC "Translation initiation fa... 202 1.9e-15 1
UNIPROTKB|Q0C535 - symbol:infC "Translation initiation fa... 191 2.9e-14 1
TIGR_CMR|SO_2300 - symbol:SO_2300 "translation initiation... 185 1.3e-13 1
TIGR_CMR|CPS_2908 - symbol:CPS_2908 "translation initiati... 183 2.2e-13 1
TIGR_CMR|CBU_1325 - symbol:CBU_1325 "translation initiati... 182 2.8e-13 1
UNIPROTKB|P65135 - symbol:infC "Translation initiation fa... 178 7.5e-13 1
TIGR_CMR|DET_0752 - symbol:DET_0752 "translation initiati... 167 1.2e-11 1
TIGR_CMR|ECH_0007 - symbol:ECH_0007 "translation initiati... 160 6.7e-11 1
TIGR_CMR|NSE_0293 - symbol:NSE_0293 "translation initiati... 140 9.7e-09 1
TAIR|locus:2131929 - symbol:AT4G30690 species:3702 "Arabi... 155 1.6e-08 1
UNIPROTKB|Q32KZ1 - symbol:MTIF3 "Translation initiation f... 154 1.9e-08 1
TAIR|locus:2061380 - symbol:AT2G24060 species:3702 "Arabi... 150 8.7e-08 1
UNIPROTKB|F1RSX7 - symbol:SSC.79080 "Uncharacterized prot... 137 1.9e-06 1
MGI|MGI:1923616 - symbol:Mtif3 "mitochondrial translation... 136 2.4e-06 1
UNIPROTKB|F1P2M3 - symbol:MTIF3 "Uncharacterized protein"... 131 2.4e-06 1
UNIPROTKB|E2RDI7 - symbol:MTIF3 "Uncharacterized protein"... 127 2.6e-05 1
ZFIN|ZDB-GENE-060228-1 - symbol:mtif3 "mitochondrial tran... 127 2.6e-05 1
>TAIR|locus:2036309 [details] [associations]
symbol:AT1G34360 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity"
evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413
"translational initiation" evidence=IEA;ISS] InterPro:IPR001288
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003743
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 EMBL:BT012288 IPI:IPI00524643
RefSeq:NP_174696.2 UniGene:At.17937 ProteinModelPortal:Q6NLP2
SMR:Q6NLP2 PaxDb:Q6NLP2 PRIDE:Q6NLP2 EnsemblPlants:AT1G34360.1
GeneID:840338 KEGG:ath:AT1G34360 TAIR:At1g34360 InParanoid:Q6NLP2
PhylomeDB:Q6NLP2 ProtClustDB:CLSN2721525 Genevestigator:Q6NLP2
Uniprot:Q6NLP2
Length = 520
Score = 489 (177.2 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 115/250 (46%), Positives = 151/250 (60%)
Query: 8 NQSRLKHLTHQFKR-YYIQV--PSLNHSISHT-KICEAKKPFWESAVKTPNDFCNNVRFF 63
N+S LK+ ++Q R YY QV S H + T K+ P + + N F N+RF
Sbjct: 8 NRSYLKYASNQLTRNYYTQVCLASSTHVVKQTTKLSSFDIPNSDICTRPSNIF-QNLRFL 66
Query: 64 AAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVD 123
A Q ++K+ E ++ GPRLN+KI +VRLV +EGH VVS EAL A+ LQCDLVEV
Sbjct: 67 ATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREALRRAKELQCDLVEVQ 126
Query: 124 RKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKAD 183
R A PPVCKI+ + E Y+K K+RAKAK ++ D KE+RF+ KIE KDL+ K+D
Sbjct: 127 RDAKPPVCKIVKYSLELYKKAKVGKERAKAKRAEAIRP-DIKEIRFTPKIEAKDLKFKSD 185
Query: 184 TVKRLMDKGYRVKCMALPVGKKE---ETEDLGGYLSRLIDLIEDISVVESGPHVERKQAY 240
+LM+ GYRVKC+A+P K E E L L R I D ++VES P +RK A
Sbjct: 186 QALKLMESGYRVKCLAVPDKDKHKELEPEKLLELLFRFTCFIGD-ALVESWPEADRKGAV 244
Query: 241 AIIRHVKFGP 250
I+RH KFGP
Sbjct: 245 VIVRHAKFGP 254
Score = 55 (24.4 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 454 SRLPNSISSDVPNTR------ASSYGIFSNP 478
+RLPN S++ P AS YGIFS P
Sbjct: 487 TRLPNETSNEQPTAPGRSSGPASGYGIFSTP 517
>TIGR_CMR|SPO_2638 [details] [associations]
symbol:SPO_2638 "translation initiation factor IF-3"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN ProtClustDB:PRK00028
RefSeq:YP_167848.1 HSSP:P0A707 ProteinModelPortal:Q5LQ58
GeneID:3195359 KEGG:sil:SPO2638 PATRIC:23378685 Uniprot:Q5LQ58
Length = 182
Score = 237 (88.5 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 58/172 (33%), Positives = 99/172 (57%)
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCK 132
+++T GPR+NDKI A +RL+ +G V H +A+A+A DLVE+ A PPVCK
Sbjct: 11 QRDT-GPRVNDKIRASEIRLIGADGENVGVVHPAKAMAMAEEAGLDLVEISPNATPPVCK 69
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
IMDF K KY+++ +E + A+ K I + KEV+F + D ++K V + ++ G
Sbjct: 70 IMDFGKYKYEQQKRESE-ARKKQKII----EVKEVKFRPNTDTHDYEVKMRNVYKFLENG 124
Query: 193 YRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ ++LG L R+ + ++++ +E+ P +E +Q +I
Sbjct: 125 DKVKVTLRFRGREMAHQNLGRELLERVAEDVKEMGKIENMPKMEGRQMIMMI 176
>TIGR_CMR|GSU_1516 [details] [associations]
symbol:GSU_1516 "translation initiation factor IF-3"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN ProtClustDB:PRK00028
RefSeq:NP_952567.1 HSSP:P03000 ProteinModelPortal:Q74D03 SMR:Q74D03
GeneID:2687717 KEGG:gsu:GSU1516 PATRIC:22025873
BioCyc:GSUL243231:GH27-1499-MONOMER Uniprot:Q74D03
Length = 172
Score = 223 (83.6 bits), Expect = 9.7e-18, P = 9.7e-18
Identities = 58/164 (35%), Positives = 93/164 (56%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A+ VR+V + + ++S EALALA + Q DLVEV A PPVC+IMD+ K K
Sbjct: 8 INQAIRAREVRVVGADSEQLGIMSLQEALALAEARQLDLVEVSPTAVPPVCRIMDYGKFK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K ++ K +S + +K EV+ K ++ DL K V+R +++G + K +
Sbjct: 68 YQQSKKLQEARKKQSHVQVK-----EVKLRPKTDEHDLMTKIKHVRRFIEEGNKAKVTLV 122
Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L R+ +EDI+VVE P +E + + I+
Sbjct: 123 FRGREITHLEFGSRALDRVAAELEDIAVVEFKPKMEGRSMFMIV 166
>TIGR_CMR|BA_4819 [details] [associations]
symbol:BA_4819 "translation initiation factor IF-3"
species:198094 "Bacillus anthracis str. Ames" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003743 KO:K02520 Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200 eggNOG:COG0290
TIGRFAMs:TIGR00168 RefSeq:NP_847022.1 RefSeq:YP_021465.2
RefSeq:YP_030718.1 ProteinModelPortal:Q81L15 SMR:Q81L15
IntAct:Q81L15 DNASU:1083958 EnsemblBacteria:EBBACT00000012731
EnsemblBacteria:EBBACT00000018781 EnsemblBacteria:EBBACT00000023613
GeneID:1083958 GeneID:2815793 GeneID:2851577 KEGG:ban:BA_4819
KEGG:bar:GBAA_4819 KEGG:bat:BAS4471 HOGENOM:HOG000035157
OMA:APKAPIN ProtClustDB:PRK00028
BioCyc:BANT260799:GJAJ-4528-MONOMER
BioCyc:BANT261594:GJ7F-4681-MONOMER Uniprot:Q81L15
Length = 167
Score = 220 (82.5 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 54/164 (32%), Positives = 94/164 (57%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++K EVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKEKEQRKNQKVISMK-----EVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 118 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 161
>TIGR_CMR|CHY_1578 [details] [associations]
symbol:CHY_1578 "translation initiation factor IF-3"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN RefSeq:YP_360407.1
ProteinModelPortal:Q3ABS7 SMR:Q3ABS7 STRING:Q3ABS7 GeneID:3727087
KEGG:chy:CHY_1578 PATRIC:21276281 ProtClustDB:CLSK2772240
BioCyc:CHYD246194:GJCN-1577-MONOMER Uniprot:Q3ABS7
Length = 169
Score = 219 (82.2 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 54/169 (31%), Positives = 94/169 (55%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N++I A+ VR+V ++G + ++ EAL +A ++ DLVE+ A PPVCKIMD
Sbjct: 2 TKDLRINEEIRAKEVRVVKEDGTQLGIMPLKEALKIAEEMELDLVEIAPTAKPPVCKIMD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K +YQ+ KEK+ K + I +K E++ IE+ D Q+K V R ++ G +V
Sbjct: 62 YGKYRYQQSKKEKEARKKQKIINVK-----EIKIRPTIEEHDFQVKLRNVLRFLEDGDKV 116
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
K + G++ ++ L+++ + I+VVE +E + I+
Sbjct: 117 KVTVMFRGRELSHPEIAYELLNKMAQEVGSIAVVERPAKLEGRNMIMIL 165
>TIGR_CMR|CJE_0200 [details] [associations]
symbol:CJE_0200 "translation initiation factor IF-3"
species:195099 "Campylobacter jejuni RM1221" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN ProtClustDB:PRK00028
RefSeq:YP_178223.1 ProteinModelPortal:Q5HWW2 SMR:Q5HWW2
STRING:Q5HWW2 GeneID:3230963 KEGG:cjr:CJE0200 PATRIC:20042112
BioCyc:CJEJ195099:GJC0-205-MONOMER Uniprot:Q5HWW2
Length = 172
Score = 217 (81.4 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 54/164 (32%), Positives = 89/164 (54%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++I A +R V D+G + ++S EAL +A L DLV + A PPVCKIMD+ K +
Sbjct: 9 LNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLGLDLVMIAADAKPPVCKIMDYGKFR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K+K+ AK K + D KE++ S KI Q D+ K +++G V+
Sbjct: 69 YQQEKKQKE-AKKKQKVI----DIKEIKLSVKIAQNDINYKVKHALEFLEQGKHVRFRVF 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ T + G L ++ +IE+ + + P+ E + ++
Sbjct: 124 LKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEGRYVNMLV 167
>UNIPROTKB|P0A707 [details] [associations]
symbol:infC "protein chain initiation factor IF-3"
species:83333 "Escherichia coli K-12" [GO:0005515 "protein binding"
evidence=IPI] [GO:0016020 "membrane" evidence=IDA] [GO:0032790
"ribosome disassembly" evidence=IMP] [GO:0009409 "response to cold"
evidence=IDA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;IDA] [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00080 InterPro:IPR001288 InterPro:IPR019813
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0009409 GO:GO:0043022 GO:GO:0003743 GO:GO:0032790 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
ProtClustDB:PRK00028 EMBL:V00291 EMBL:K02844 PIR:S13748
RefSeq:NP_416233.1 RefSeq:YP_489980.1 PDB:2IFE PDBsum:2IFE
ProteinModelPortal:P0A707 SMR:P0A707 DIP:DIP-36176N IntAct:P0A707
MINT:MINT-1221578 PhosSite:P010443 PaxDb:P0A707 PRIDE:P0A707
EnsemblBacteria:EBESCT00000002624 EnsemblBacteria:EBESCT00000002625
EnsemblBacteria:EBESCT00000002627 EnsemblBacteria:EBESCT00000017763
EnsemblBacteria:EBESCT00000232604 GeneID:12933198 GeneID:946225
KEGG:ecj:Y75_p1693 KEGG:eco:b1718 PATRIC:32118740 EchoBASE:EB0501
EcoGene:EG10506 BioCyc:EcoCyc:EG10506-MONOMER
BioCyc:ECOL316407:JW5829-MONOMER ChEMBL:CHEMBL1075077
EvolutionaryTrace:P0A707 Genevestigator:P0A707 Uniprot:P0A707
Length = 180
Score = 213 (80.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 57/172 (33%), Positives = 97/172 (56%)
Query: 77 ETSGP-RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
+T+ P R+N +I AQ VRL EG + +VS EAL A DLVE+ A PPVC+I
Sbjct: 8 QTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRI 67
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
MD+ K Y+K K++ K + I +K E++F ++ D Q+K ++ R +++G
Sbjct: 68 MDYGKFLYEKSKSSKEQKKKQKVIQVK-----EIKFRPGTDEGDYQVKLRSLIRFLEEGD 122
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP-HVERKQAYAII 243
+ K G++ + +G L+R+ D +++++VVES P +E +Q ++
Sbjct: 123 KAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVL 174
>TIGR_CMR|APH_1263 [details] [associations]
symbol:APH_1263 "translation initiation factor IF-3"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR001288
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0003743 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
RefSeq:YP_505782.1 ProteinModelPortal:Q2GIL9 STRING:Q2GIL9
GeneID:3931324 KEGG:aph:APH_1263 PATRIC:20951316
ProtClustDB:CLSK747415 BioCyc:APHA212042:GHPM-1266-MONOMER
Uniprot:Q2GIL9
Length = 172
Score = 209 (78.6 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 57/162 (35%), Positives = 87/162 (53%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+ND I + VRLV + G V V EALA+A DLVEV + PVCK+
Sbjct: 2 DKKGPRINDAITTKRVRLVDETGTMVGVVDIEEALAVAARAGMDLVEVVSEGEYPVCKVY 61
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
++ K+KY K+ K K +S KE++F IE D +K + +K ++KG +
Sbjct: 62 NYSKQKYNKK-KHGVTKKQRSSAV------KELKFRINIEDNDYNIKLNNLKSFIEKGNK 114
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VK VG++ + +++G L RL+ E I+ ES P ++
Sbjct: 115 VKVSLRFVGRELQYKEVGLDILDRLVSDTEGIAKPESSPRMD 156
>UNIPROTKB|P65144 [details] [associations]
symbol:infC "Translation initiation factor IF-3"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00080 InterPro:IPR001288
InterPro:IPR019813 InterPro:IPR019814 InterPro:IPR019815
Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938 GO:GO:0005737
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0003743 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
ProtClustDB:PRK00028 PIR:G95110 RefSeq:NP_345440.1
ProteinModelPortal:P65144 SMR:P65144 IntAct:P65144
EnsemblBacteria:EBSTRT00000027262 GeneID:930913 KEGG:spn:SP_0959
PATRIC:19706323 Uniprot:P65144
Length = 185
Score = 202 (76.2 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 50/161 (31%), Positives = 91/161 (56%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I + VRL+ EG ++ + EA ALA + DLV + +A PPV KIMD+ K K
Sbjct: 20 INDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFK 79
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ + K+K++ K +S +T+K EVR S I++ D K ++ ++KG +VK
Sbjct: 80 FEYQKKQKEQRKKQSVVTVK-----EVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIR 134
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAY 240
G+ +++G L+ + +DI+++E ++ +Q +
Sbjct: 135 FKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF 175
>UNIPROTKB|Q0C535 [details] [associations]
symbol:infC "Translation initiation factor IF-3"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0005737
"cytoplasm" evidence=ISS] HAMAP:MF_00080 InterPro:IPR001288
InterPro:IPR019813 InterPro:IPR019814 InterPro:IPR019815
Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938 GO:GO:0005737
GO:GO:0003743 EMBL:CP000158 GenomeReviews:CP000158_GR KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
ProtClustDB:PRK00028 RefSeq:YP_759158.1 ProteinModelPortal:Q0C535
SMR:Q0C535 STRING:Q0C535 GeneID:4290109 KEGG:hne:HNE_0428
PATRIC:32213648 BioCyc:HNEP228405:GI69-472-MONOMER Uniprot:Q0C535
Length = 180
Score = 191 (72.3 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 54/171 (31%), Positives = 89/171 (52%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
K+ +GPR+N++I A V L+ + G K V+ AL AR DLVEV PV KI
Sbjct: 12 KKQAGPRINEEIRAAKVLLIDENGEKQGVMPLAAALDAAREASMDLVEVSAGQETPVVKI 71
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+D+ K +++ E K+K A+ K K + KE++ I+ D ++KA + R ++G
Sbjct: 72 LDYGKLRFE-ERKKKAAARKKQ----KSSELKEIKIRPNIDTHDYEVKARAIARFFEEGD 126
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ + LG L ++ E+ + VE P +E KQ ++
Sbjct: 127 KVKITLRFRGREMAHQHLGMELLEKVKKDFEETAKVELEPKLEGKQMTMVL 177
>TIGR_CMR|SO_2300 [details] [associations]
symbol:SO_2300 "translation initiation factor IF-3"
species:211586 "Shewanella oneidensis MR-1" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN ProtClustDB:PRK00028
RefSeq:NP_717896.2 ProteinModelPortal:Q8EER8 SMR:Q8EER8
GeneID:1170025 KEGG:son:SO_2300 PATRIC:23524223 Uniprot:Q8EER8
Length = 178
Score = 185 (70.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 56/177 (31%), Positives = 95/177 (53%)
Query: 76 KETSG----P-RLNDKINA-QFVRLV-LD-EGHKVVSRHEALALARSLQCDLVEVDRKAN 127
K+T+G P R+N++I VRL +D E VVS +A LA DLVE+ A
Sbjct: 2 KKTAGRQLAPNRINEEITGVPEVRLTGIDGEAIGVVSIRDAQNLADEAGVDLVEISPNAE 61
Query: 128 PPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
PPVC+IMD+ K + K K++ K + + +K E++F ++ D Q+K + R
Sbjct: 62 PPVCRIMDYGKFLFDKAKSAKEQKKKQKQVQVK-----EIKFRPGTDENDYQVKLRNLIR 116
Query: 188 LMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++ G + K G++ ++LG L+R+ +++ +VVES P +E +QA ++
Sbjct: 117 FLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKTDLDEYAVVESFPKMEGRQAIMVL 173
>TIGR_CMR|CPS_2908 [details] [associations]
symbol:CPS_2908 "translation initiation factor IF-3"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN RefSeq:YP_269609.1
ProteinModelPortal:Q480B0 SMR:Q480B0 STRING:Q480B0 GeneID:3522158
KEGG:cps:CPS_2908 PATRIC:21468843
BioCyc:CPSY167879:GI48-2958-MONOMER Uniprot:Q480B0
Length = 185
Score = 183 (69.5 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 53/184 (28%), Positives = 99/184 (53%)
Query: 67 VQAQQKKDEKETSGPRLNDKINAQF---VRLVLDEGHK--VVSRHEALALARSLQCDLVE 121
++ Q+ KE + RLN+ I +RL+ +G +V+ EA+ A DLVE
Sbjct: 3 IKGGQRGGRKEPAH-RLNELITDILDNEIRLIKFDGEPGGIVTLDEAMDQADDAGVDLVE 61
Query: 122 VDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMK 181
+ A PPVC++MD+ K Y+K ++K++ K + I +K E++F ++ D Q+K
Sbjct: 62 ISPTAKPPVCRVMDYGKFIYEKAKEQKEQRKNQKQIQVK-----EIKFRPGTDEGDYQVK 116
Query: 182 ADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPH-VERKQA 239
+KR ++ G +VK G++ ++LG L+R+ + +E+++V+E P E +Q
Sbjct: 117 LRNLKRFLEGGDKVKVTLRFRGREMAHQELGLQLLTRVKNDLEELTVLEFFPRRAEGRQM 176
Query: 240 YAII 243
++
Sbjct: 177 VMVL 180
>TIGR_CMR|CBU_1325 [details] [associations]
symbol:CBU_1325 "translation initiation factor IF-3"
species:227377 "Coxiella burnetii RSA 493" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 ProtClustDB:PRK00028 RefSeq:NP_820315.1
ProteinModelPortal:Q83C11 PRIDE:Q83C11 GeneID:1209231
KEGG:cbu:CBU_1325 PATRIC:17931385 OMA:HDYQTKV
BioCyc:CBUR227377:GJ7S-1316-MONOMER Uniprot:Q83C11
Length = 185
Score = 182 (69.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 53/169 (31%), Positives = 87/169 (51%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRL+ ++G +V V AL +A DLVE+ A PPVC+IM+F K
Sbjct: 7 RVNNQIRVPEVRLIDEKGEQVGVVRTDRALTMAEEAGLDLVEISPTAKPPVCRIMNFGKY 66
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
++++ K K K K + KEV+F + D Q+K + +D+G +VK
Sbjct: 67 QFEQS-KRKAAQKKKQRLV----HLKEVKFRPGTDVGDYQVKLRKIATFLDRGDKVKVSL 121
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G++ + +LG L R+ + +I VVE P +E +Q ++ K
Sbjct: 122 RFRGREMQHRELGLELLGRVKRDLGNI-VVEQEPRLEGRQMTMVVMKAK 169
>UNIPROTKB|P65135 [details] [associations]
symbol:infC "Translation initiation factor IF-3"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00080 InterPro:IPR001288 InterPro:IPR019813
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0005886 GO:GO:0005737 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842577 GO:GO:0003743 KO:K02520 Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200 eggNOG:COG0290
TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
ProtClustDB:PRK00028 PIR:D70619 RefSeq:NP_216157.1
RefSeq:NP_336134.1 ProteinModelPortal:P65135 SMR:P65135
EnsemblBacteria:EBMYCT00000002105 EnsemblBacteria:EBMYCT00000069306
GeneID:885478 GeneID:923998 KEGG:mtc:MT1679 KEGG:mtu:Rv1641
PATRIC:18125456 TubercuList:Rv1641 Uniprot:P65135
Length = 201
Score = 178 (67.7 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 49/152 (32%), Positives = 77/152 (50%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRL+ G +V V +AL +A DLVEV A PPVCKIMD+ K
Sbjct: 6 RVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ + + +K E + KI+ D + K V R ++ G +VK
Sbjct: 66 KYEAAQKARESRRNQQQTVVK-----EQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
+ G+++ +LG L RL + D +E+
Sbjct: 121 MFRGREQSRPELGYRLLQRLGADVADYGFIET 152
>TIGR_CMR|DET_0752 [details] [associations]
symbol:DET_0752 "translation initiation factor IF-3"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:HDYQTKV RefSeq:YP_181486.1
ProteinModelPortal:Q3Z8G3 SMR:Q3Z8G3 STRING:Q3Z8G3 GeneID:3229940
KEGG:det:DET0752 PATRIC:21608565 ProtClustDB:CLSK837317
BioCyc:DETH243164:GJNF-753-MONOMER Uniprot:Q3Z8G3
Length = 168
Score = 167 (63.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 48/142 (33%), Positives = 78/142 (54%)
Query: 94 LVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRA 151
+V D+G + ++ +A AR + DLVEV A PPVC++MD+ K Y+ E +KDR
Sbjct: 1 MVGDKGEQLGILPILQAREQARKINLDLVEVAPTAVPPVCRLMDYGK--YRFEQTKKDR- 57
Query: 152 KAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDL 211
+AK T K KE+R KI + D KA + ++ ++ G +VK + G++ +L
Sbjct: 58 EAKK--TQKVSLLKEIRVRPKIGEHDFDAKARSARKQLECGDKVKLTVMFRGREITHAEL 115
Query: 212 G-GYLSRLIDLIEDISVVESGP 232
G L ++ D + DI+ +E P
Sbjct: 116 GLKLLKKMADSLTDIATIEGQP 137
>TIGR_CMR|ECH_0007 [details] [associations]
symbol:ECH_0007 "translation initiation factor IF-3"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019814 InterPro:IPR019815
Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938 GO:GO:0005737
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003743 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157
ProtClustDB:PRK00028 RefSeq:YP_506842.1 ProteinModelPortal:Q2GI91
STRING:Q2GI91 GeneID:3927184 KEGG:ech:ECH_0007 PATRIC:20575587
OMA:FDRRAPV BioCyc:ECHA205920:GJNR-7-MONOMER Uniprot:Q2GI91
Length = 173
Score = 160 (61.4 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 49/167 (29%), Positives = 87/167 (52%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHK---VVSRHEALALARSLQCDLVEVDRKANPP 129
K +K ++ ++N+ I A+ V+LV D+ VV EAL+ A+++ DLVE+ P
Sbjct: 2 KTKKFSNKNKINEMITAKKVKLV-DQNSVMIGVVDIEEALSRAKAVNLDLVEIVHDDQYP 60
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
+CKI D+ K +Y + K D K + I +K E++F I D +K + ++ +
Sbjct: 61 LCKIFDYSKYRYSHKKKISDSKKKQKTIIVK-----ELKFKLNIGDNDYNVKLNMLRGFI 115
Query: 190 DKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
++G +VK +G++ ++G + RLI DI+ E+ P E
Sbjct: 116 ERGDKVKISLRFIGREILHPEVGMEIIERLIRDTADIAKPENLPKKE 162
>TIGR_CMR|NSE_0293 [details] [associations]
symbol:NSE_0293 "translation initiation factor IF-3"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 GO:GO:0003743 EMBL:CP000237 GenomeReviews:CP000237_GR
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 RefSeq:YP_506184.1 ProteinModelPortal:Q2GEB2
STRING:Q2GEB2 GeneID:3932008 KEGG:nse:NSE_0293 PATRIC:22680679
OMA:YANANNE ProtClustDB:CLSK2527814
BioCyc:NSEN222891:GHFU-320-MONOMER Uniprot:Q2GEB2
Length = 189
Score = 140 (54.3 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/131 (30%), Positives = 67/131 (51%)
Query: 95 VLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAK 154
V D+ V+ EAL LA+S DLVEV PP+CKI+D+ K KY+ + KE + + K
Sbjct: 38 VNDKFMGVMKIAEALQLAKSRNLDLVEVSSAVFPPICKILDYGKYKYEAK-KESNLKRRK 96
Query: 155 SDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGY 214
K KEV+ I DL K ++ + + +VK + G++ ++L
Sbjct: 97 Q----KSSTIKEVQLRQSIGAGDLSTKLKKIREFLQEEDKVKVVVRLRGREMTNKNLA-- 150
Query: 215 LSRLIDLIEDI 225
++ L ++E++
Sbjct: 151 INLLNKVVEEV 161
>TAIR|locus:2131929 [details] [associations]
symbol:AT4G30690 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity"
evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413
"translational initiation" evidence=IEA;ISS] [GO:0005618 "cell
wall" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
HAMAP:MF_00080 InterPro:IPR001288 InterPro:IPR019813
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0005618 GO:GO:0009507 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003743 KO:K02520 Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200 eggNOG:COG0290
TIGRFAMs:TIGR00168 HSSP:P02999 HOGENOM:HOG000030813
ProtClustDB:CLSN2720900 EMBL:AY042848 EMBL:AY072500 IPI:IPI00517371
RefSeq:NP_567851.1 UniGene:At.3675 UniGene:At.74203
ProteinModelPortal:Q94B52 SMR:Q94B52 STRING:Q94B52 PaxDb:Q94B52
PRIDE:Q94B52 EnsemblPlants:AT4G30690.1 GeneID:829192
KEGG:ath:AT4G30690 TAIR:At4g30690 InParanoid:Q94B52 OMA:LRRFQND
PhylomeDB:Q94B52 Genevestigator:Q94B52 Uniprot:Q94B52
Length = 281
Score = 155 (59.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 45/172 (26%), Positives = 89/172 (51%)
Query: 63 FAAPVQAQQKKDEKETSGPRLN-DKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDL 119
F + +QK+ E + S L+ I + VRL+ D+ + + VS+ EA+ A + DL
Sbjct: 69 FPGDRRGRQKESEDDDS---LDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAELDL 125
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
V + A+PPV ++MD+ K +Y+++ ++K++ K + + D KE++ I+Q D
Sbjct: 126 VILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKTTRM-----DLKELKMGYNIDQHDYS 180
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDL-IEDISVVES 230
++ ++ + G +VK + G++ E ++ L R I ++ ES
Sbjct: 181 VRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEES 232
>UNIPROTKB|Q32KZ1 [details] [associations]
symbol:MTIF3 "Translation initiation factor IF-3,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043024 "ribosomal small subunit
binding" evidence=IDA] [GO:0008135 "translation factor activity,
nucleic acid binding" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=IDA] [GO:0032790 "ribosome
disassembly" evidence=IDA] [GO:0003743 "translation initiation
factor activity" evidence=IEA] InterPro:IPR001288
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0005739 GO:GO:0006446 GO:GO:0008135
GO:GO:0003743 GO:GO:0043024 GO:GO:0032790 EMBL:BC109845
IPI:IPI00688456 RefSeq:NP_001033155.1 UniGene:Bt.30788
ProteinModelPortal:Q32KZ1 SMR:Q32KZ1 STRING:Q32KZ1
Ensembl:ENSBTAT00000027352 GeneID:509987 KEGG:bta:509987 CTD:219402
eggNOG:NOG87881 GeneTree:ENSGT00390000014424 HOGENOM:HOG000264227
HOVERGEN:HBG080563 InParanoid:Q32KZ1 KO:K02520 OMA:HDLDTKS
OrthoDB:EOG498V23 NextBio:20869232 Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200 Uniprot:Q32KZ1
Length = 273
Score = 154 (59.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 50/182 (27%), Positives = 92/182 (50%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDL--VEVDRKANPP 129
KK + ET+ + KIN + + ++ ++G+ + H A + + DL V+ D A PP
Sbjct: 62 KKKKNETAFSSVGRKINERIIHVLDEQGNDLGHMHRANVIRLMAERDLRLVKRDASAEPP 121
Query: 130 VCKIM---DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVK 186
+++ H+E+ + L+E +RA K TL K E+ FS I Q DL K+ ++
Sbjct: 122 QYQLLTGAQIHQERLR--LREAERAAPKPGPTLTK----ELTFSSNIGQHDLDTKSKQIQ 175
Query: 187 RLMDKGYRVKCMALPVGKK-EETED-LGGYLSRLIDLIEDISVVESGPHVER--KQAYAI 242
+ ++K Y+V+ + + GK +E ED + +R++ + I+ S P R K +
Sbjct: 176 QWIEKKYKVQ-ITVKKGKSADEPEDKMEEMCNRIVQTMSGIATFSSRPQPIRGGKAVMCV 234
Query: 243 IR 244
+R
Sbjct: 235 LR 236
>TAIR|locus:2061380 [details] [associations]
symbol:AT2G24060 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity"
evidence=IEA;ISS] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
HAMAP:MF_00080 InterPro:IPR001288 InterPro:IPR019813
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003743 EMBL:AC005170 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 EMBL:AY072160 EMBL:AY096414
EMBL:AY088131 IPI:IPI00543613 PIR:B84632 RefSeq:NP_179984.1
UniGene:At.43835 HSSP:P02999 ProteinModelPortal:O82234 SMR:O82234
STRING:O82234 World-2DPAGE:0003:O82234 PaxDb:O82234 PRIDE:O82234
ProMEX:O82234 EnsemblPlants:AT2G24060.1 GeneID:816940
KEGG:ath:AT2G24060 TAIR:At2g24060 HOGENOM:HOG000030813
InParanoid:O82234 OMA:KEMIRKP PhylomeDB:O82234
ProtClustDB:CLSN2720900 ArrayExpress:O82234 Genevestigator:O82234
Uniprot:O82234
Length = 312
Score = 150 (57.9 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 40/147 (27%), Positives = 79/147 (53%)
Query: 87 INAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKE 144
I + VRL+ + + + VS+ EA+ +A + DLV + A+PPV K+MD+ K +Y+++
Sbjct: 95 IRSATVRLIDGQQNMLGLVSKDEAVRMADDAELDLVILSPDADPPVVKMMDYSKYRYEQQ 154
Query: 145 LKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGK 204
++KD+ K + + D KE++ I+Q D ++ ++ + G +VK + G+
Sbjct: 155 KRKKDQQKKTTRM-----DLKELKMGYNIDQHDYSVRLRAAQKFLQDGDKVKVIVSMKGR 209
Query: 205 KEETEDLGGYLSRLIDL-IEDISVVES 230
+ E ++ L R I +++ ES
Sbjct: 210 ENEFRNIAIELLRRFQTEIGELATEES 236
>UNIPROTKB|F1RSX7 [details] [associations]
symbol:SSC.79080 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR001288 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 GO:GO:0003743
GeneTree:ENSGT00390000014424 OMA:HDLDTKS Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200 EMBL:CU606917
EMBL:CU695218 Ensembl:ENSSSCT00000010194 Ensembl:ENSSSCT00000010195
Uniprot:F1RSX7
Length = 278
Score = 137 (53.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 50/194 (25%), Positives = 98/194 (50%)
Query: 62 FFAAPVQAQQKKDEK-ETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDL- 119
F Q ++KK +K ET+ + KI+ + + ++ ++G+ + H A + + DL
Sbjct: 56 FSTEDTQEERKKKKKDETAFSNIGRKIHERIIHVLDEQGNDLGHMHRANVIRLMAERDLR 115
Query: 120 -VEVDRKANPPVCKIM---DFHKEKYQKELKEKDRAKAK-SDITLKKGDCKEVRFSGKIE 174
V D A PP +++ H+E+ + L+E RA+ K + TL K E+ FS I
Sbjct: 116 LVRRDPGAEPPQYQLLTGAQIHQERLR--LREAGRAEPKPAGPTLTK----ELTFSSNIG 169
Query: 175 QKDLQMKADTVKRLMDKGYRVKCMALPVGKK-EETED-LGGYLSRLIDLIEDISVVESGP 232
Q DL K+ +++ ++K Y+V+ + + G+ EE E+ + ++++ + I+ S P
Sbjct: 170 QHDLDTKSKQIQQWIEKKYKVQ-ITIKKGRNAEEPENKMEELCNQILQTMHGIATFSSRP 228
Query: 233 HVER--KQAYAIIR 244
+ R K ++R
Sbjct: 229 QLIRGGKAMMCVLR 242
>MGI|MGI:1923616 [details] [associations]
symbol:Mtif3 "mitochondrial translational initiation factor
3" species:10090 "Mus musculus" [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008135 "translation
factor activity, nucleic acid binding" evidence=ISS] [GO:0032790
"ribosome disassembly" evidence=ISS] [GO:0043024 "ribosomal small
subunit binding" evidence=ISS] InterPro:IPR001288
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 MGI:MGI:1923616 GO:GO:0005739 GO:GO:0006446
GO:GO:0008135 GO:GO:0003743 GO:GO:0043024 GO:GO:0032790 CTD:219402
GeneTree:ENSGT00390000014424 HOGENOM:HOG000264227
HOVERGEN:HBG080563 KO:K02520 OMA:HDLDTKS OrthoDB:EOG498V23
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
EMBL:AK012733 EMBL:AK147090 EMBL:BC115684 EMBL:BC115685
IPI:IPI00112557 RefSeq:NP_001243029.1 RefSeq:NP_001243030.1
RefSeq:NP_001243031.1 RefSeq:NP_083857.1 UniGene:Mm.486234 PDB:2CRQ
PDBsum:2CRQ ProteinModelPortal:Q9CZD5 SMR:Q9CZD5 STRING:Q9CZD5
PaxDb:Q9CZD5 PRIDE:Q9CZD5 Ensembl:ENSMUST00000016654
Ensembl:ENSMUST00000066675 Ensembl:ENSMUST00000110564
Ensembl:ENSMUST00000110566 GeneID:76366 KEGG:mmu:76366
eggNOG:COG0290 InParanoid:Q9CZD5 EvolutionaryTrace:Q9CZD5
NextBio:344973 Bgee:Q9CZD5 CleanEx:MM_MTIF3 Genevestigator:Q9CZD5
TIGRFAMs:TIGR00168 Uniprot:Q9CZD5
Length = 276
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 57/244 (23%), Positives = 115/244 (47%)
Query: 21 RYYIQVPSLNHS-ISHTKICEAKKPF---WESAVKTPND-FCNNVRFFAAPVQAQ-QKKD 74
R +Q L+H+ I A KP + TP + + + F+ Q ++K
Sbjct: 7 RLMLQTTKLDHNLIGRCLQRHAVKPDPAQLSLSASTPKLLYLTSAKGFSTAGDPQGERKQ 66
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEA--LALARSLQCDLVEVDRKANPPVCK 132
++ + KI+ + +R++ ++G + H A + L LV+ + + PP +
Sbjct: 67 KRRDAFSNTGRKISERIIRVLDEKGMDLGMMHRADVIRLMNKQDLRLVQRNTSSEPPEYQ 126
Query: 133 IM---DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
+M H+E+ + L+E+++AK K+ T+ K E+ FS I Q DL K+ +++ +
Sbjct: 127 LMTGEQIHQERLK--LREQEKAKPKTGPTMTK----ELVFSSNIGQHDLDTKSKQIQQWI 180
Query: 190 DKGYRVKCMALPVGK-----KEETEDLGGYLSRLIDLIEDISVVESGPHVER--KQAYAI 242
+K Y V+ + + K +EETE++ ++++ + DI+ S P R + +
Sbjct: 181 EKKYHVQ-VTIKRRKDAEQSEEETEEI---FNQILQTMPDIATFSSRPKAIRGGTASMCV 236
Query: 243 IRHV 246
RH+
Sbjct: 237 FRHL 240
>UNIPROTKB|F1P2M3 [details] [associations]
symbol:MTIF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR001288 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 GO:GO:0003743
GeneTree:ENSGT00390000014424 OMA:HDLDTKS Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
TIGRFAMs:TIGR00168 EMBL:AADN02005181 IPI:IPI00574163
Ensembl:ENSGALT00000027620 Uniprot:F1P2M3
Length = 205
Score = 131 (51.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 43/167 (25%), Positives = 79/167 (47%)
Query: 86 KINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCKIM---DFHKEK 140
+I + + ++ +G + H EAL L LV + A PPV ++M H+EK
Sbjct: 12 RIPYRILHVINQDGESLGDMHRAEALRLMDEHDLKLVLLRENAEPPVYRLMTGQQIHEEK 71
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ EK++A +K+ T KE+ FS I + DL+ K + ++K Y VK + +
Sbjct: 72 LKRA--EKEKASSKTGTTT----VKELSFSSAIAKNDLETKIKQITHWIEKKYHVK-VTI 124
Query: 201 PVGKKEETEDLGGYLSRLIDLIEDISVVESGPH-VERKQAYAIIRHV 246
K T D ++++ + D + S P ++ + I+RH+
Sbjct: 125 RQAKDSNT-DTFTLFDQILETMSDKATYLSKPKAIKEGTSMCILRHI 170
>UNIPROTKB|E2RDI7 [details] [associations]
symbol:MTIF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003743 "translation initiation factor
activity" evidence=IEA] InterPro:IPR001288 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 GO:GO:0003743
CTD:219402 GeneTree:ENSGT00390000014424 KO:K02520 OMA:HDLDTKS
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
EMBL:AAEX03014243 RefSeq:XP_849667.1 ProteinModelPortal:E2RDI7
Ensembl:ENSCAFT00000010929 GeneID:477328 KEGG:cfa:477328
NextBio:20852839 Uniprot:E2RDI7
Length = 279
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 48/188 (25%), Positives = 94/188 (50%)
Query: 69 AQQKKDEKETSGPRLNDKINAQFVRLVLDE-GHKVVSRHEALALARSLQCDL--VEVDRK 125
+++KK + + + + KI+ + + VLDE G+ + S H A + + DL V+ D
Sbjct: 66 SRKKKTKNDPAFSNIGRKIHERVIH-VLDEAGNDLGSMHRAEVIRLMAERDLRLVKRDSG 124
Query: 126 ANPPVCKIMD---FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKA 182
+ PP +++ H+E+ + L+E ++A K L K E+ S I Q DL K+
Sbjct: 125 SEPPRYQLLSGLQIHEERLR--LREMEKAHPKPGPVLTK----ELTLSSNIGQHDLDTKS 178
Query: 183 DTVKRLMDKGYRVKCMALPVGKK-EETED-LGGYLSRLIDLIEDISVVESGPHVER--KQ 238
+++ ++K Y+V+ + + GK EE E + ++++ + I+ S P R K
Sbjct: 179 KQIQQWIEKKYKVQ-ITIKKGKNVEEPEHKMEDICNKILQTMPGIATFLSRPQPVRGGKA 237
Query: 239 AYAIIRHV 246
++RH+
Sbjct: 238 VTCVLRHL 245
>ZFIN|ZDB-GENE-060228-1 [details] [associations]
symbol:mtif3 "mitochondrial translational initiation
factor 3" species:7955 "Danio rerio" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001288
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
ZFIN:ZDB-GENE-060228-1 GO:GO:0003743 CTD:219402
GeneTree:ENSGT00390000014424 HOGENOM:HOG000264227 KO:K02520
OrthoDB:EOG498V23 Gene3D:3.10.20.80 PANTHER:PTHR10938
SUPFAM:SSF54364 SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
EMBL:BX247876 IPI:IPI00483498 RefSeq:XP_003198773.1
UniGene:Dr.108957 Ensembl:ENSDART00000144879 GeneID:325802
KEGG:dre:325802 InParanoid:A2BEV1 OMA:HVRITLR NextBio:20809487
Uniprot:A2BEV1
Length = 280
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 54/223 (24%), Positives = 100/223 (44%)
Query: 21 RYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAAPVQAQQKKDEKETSG 80
R + +P+ ++ + C+ P+ ++ T D + A +Q+KK++K
Sbjct: 20 RLNLPLPTKPPTLRPARGCQIFLPWPRASFSTDTDGGDP----AIQTDSQKKKNKKLDPR 75
Query: 81 PRLN-----DKINAQFVRLVLDEGHKVVSRHEALALARSLQCDL--VEVDRKANPPVCKI 133
R+ KI + + L+ +G + +H A + Q DL V V+ +PPV K+
Sbjct: 76 ARVTISSVGRKIGQRHIHLIGADGEDLGVKHRADVIRLLDQTDLKLVAVNDSRDPPVYKL 135
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
M KE ++++LK +++ K K + KE+ FS I DL K + ++K
Sbjct: 136 MK-GKEIHEEQLKLREKQKDKKGVV----QSKELNFSSDISLHDLDNKLRQIVSWLEKNN 190
Query: 194 RVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVER 236
VK + + G ET L L+++++ I S P + R
Sbjct: 191 HVK-LTIRAGTNSETP-LDKILTQMVEKISVPVAFVSNPTLIR 231
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 536 490 0.00082 119 3 11 23 0.47 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 611 (65 KB)
Total size of DFA: 277 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.19u 0.10s 48.29t Elapsed: 00:00:03
Total cpu time: 48.19u 0.10s 48.29t Elapsed: 00:00:03
Start: Mon May 20 23:30:57 2013 End: Mon May 20 23:31:00 2013