BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009379
(536 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297744586|emb|CBI37848.3| unnamed protein product [Vitis vinifera]
Length = 759
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/551 (45%), Positives = 338/551 (61%), Gaps = 68/551 (12%)
Query: 1 MAFSCRTNQSRLKH--LTHQFKRYYIQVPSLNHSISHT---KICEAKKPFWESAVKTPND 55
M+F R NQ +LK LT QFKR +Q+P HS+++T I + P W + + P+D
Sbjct: 1 MSFWHRINQPKLKWQTLTRQFKRCSLQIPHA-HSLNNTPRQTIRGFENPCWVNR-RNPSD 58
Query: 56 FCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSL 115
FC NVRFFAAPVQA+ K++EK+ SGPR+ND+I A FVRLV D+GH++VSR AL AR L
Sbjct: 59 FCYNVRFFAAPVQAKPKQEEKDASGPRMNDQIRADFVRLVTDDGHEIVSRMVALERARKL 118
Query: 116 QCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQ 175
+ DLVEV RKA+PPVCKIMDFH+EKY++++KEKDR K+KS++TL+KGDCKEVRFSGK E
Sbjct: 119 KLDLVEVQRKADPPVCKIMDFHREKYKQQIKEKDRTKSKSELTLRKGDCKEVRFSGKTEA 178
Query: 176 KDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVE 235
KDL+MKAD VKRLMD+GYRVKCMA+ E +DLGG L+RL LIED+ VESGP VE
Sbjct: 179 KDLKMKADMVKRLMDRGYRVKCMAMGT----EDQDLGGLLTRLSSLIEDVCFVESGPRVE 234
Query: 236 RKQAYAIIRHVKFGP-SKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDP 294
++QAY I+RH+KFGP K G K K VG TS S+AAT S TI +++ P+ H E P
Sbjct: 235 KRQAYVIVRHIKFGPSKKGSGKKASKVVGVTS--SEAATMSPTISPTIN---PSSHVESP 289
Query: 295 AEFGLE--------------------------------KIEKKNTPWSVSNSNDDLNEVF 322
+ +E +E WSV ++NDD ++VF
Sbjct: 290 IQLEVESDTAESDLENEDEVLSDEADTPISPSMRMADKNLEDNKATWSVFDANDDFDKVF 349
Query: 323 DLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSH-PKPAPNFSRADTLGSTPHGPS 381
D + A SN T K NA E++S +I+ S+ H P+P + +R +++ S+ P
Sbjct: 350 DFTNDAN--PSNSTDKQTNAKLETSSSLENINLSDIMHGPRPVLDSTRTNSVPSSLTEPP 407
Query: 382 LGTGNRYARSEQKNQF-PQKPIDNLGSGTRESFRSEPQFPSQRRQPPPPPNMNASPSMGE 440
T NRY +SE +N+F P +DN G G S R PQF +Q +Q + N+SPS G
Sbjct: 408 PETLNRYRKSEPRNRFMPTTSMDNKGPGATNSLRLGPQFLNQGKQ--ARSDTNSSPSTGR 465
Query: 441 KKPIGTEASNFRNSRLPNSISSDVP--------NTRASSYGIFSNPTANAPTGQGMAAD- 491
+ GT+AS FRN +LP ++P ++ SYG FS A AP +A+
Sbjct: 466 TRQDGTDASVFRNLKLP---LHEIPMQEPSRPPSSPRPSYGDFSALKAEAPGKLDPSANS 522
Query: 492 -RTKEGIPTQG 501
R++ +P QG
Sbjct: 523 ARSEPRLPNQG 533
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 23/142 (16%)
Query: 412 SFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSDVPN----- 466
S RSEP+ P+Q +Q ++N PS G K + + S RNS+ P ++D P
Sbjct: 522 SARSEPRLPNQGKQSWS--DLNFVPSTGGTKQVPADTSVSRNSKPP---TNDGPKPEQSH 576
Query: 467 -----TRASSYGIFSNPTANAPTGQGMAAD--RTKEGIPTQG----TAGVRPNQNSPGLK 515
+ SSYGIFS A AP QGMA++ R KEG P++ +AG N N P K
Sbjct: 577 PVPPSSPTSSYGIFSASKATAPGKQGMASEVNRNKEGNPSESARNPSAGGVFNANFPS-K 635
Query: 516 SDGSQTPGPD-NGQRKFGIFSR 536
SDGSQ G + +GQ +G+FSR
Sbjct: 636 SDGSQRGGVNQDGQGGWGMFSR 657
>gi|147855678|emb|CAN79141.1| hypothetical protein VITISV_023967 [Vitis vinifera]
Length = 713
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 250/588 (42%), Positives = 331/588 (56%), Gaps = 105/588 (17%)
Query: 1 MAFSCRTNQSRLKH--LTHQFKRYYIQVPSLNHSISHT---KICEAKKPFWESAVKTPND 55
M+F R NQ +LK LT QFKR +Q+P HS+++T I + P W + + P+D
Sbjct: 1 MSFWHRINQPKLKWQTLTRQFKRCSLQIPHA-HSLNNTPRQTIRGFENPCWVNR-RNPSD 58
Query: 56 FCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSL 115
FC NVRFFAAPVQA+ K++EK+ SGPR+ND+I A FVRLV D+GH++VSR AL AR L
Sbjct: 59 FCYNVRFFAAPVQAKPKQEEKDASGPRMNDQIRADFVRLVTDDGHEIVSRMVALERARKL 118
Query: 116 QCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKS-------------------- 155
+ DLVEV RKA+PPVCKIMDFH EKY++++KEKDR K+KS
Sbjct: 119 KLDLVEVQRKADPPVCKIMDFHXEKYKQQIKEKDRTKSKSTSKIVKVVHLEFLHLMWRVI 178
Query: 156 ----DITLKK----------------GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
++TL+K G C K+E KDL+MKAD VKRLMD+GYRV
Sbjct: 179 YDVSELTLRKRRLQGSSIFWENWHAYGRCDMGTL--KLEAKDLKMKADMVKRLMDRGYRV 236
Query: 196 KCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGP-SKKG 254
KCMA+ E +DLGG L+RL LIED+ VESGP VE++QAY I+RH+KFGP K
Sbjct: 237 KCMAMGT----EDQDLGGLLTRLSSLIEDVCFVESGPRVEKRQAYVIVRHIKFGPSKKGS 292
Query: 255 GLKKLKAVGDTSGVSKAATPSSTIERS------VDIPTPAIHEEDPAEFGLE-------- 300
G K K VG TS S+AAT S TI + V+ P E D AE LE
Sbjct: 293 GKKASKVVGVTS--SEAATMSPTISPTINPSSHVESPIQLEEESDTAESDLENEDEVLSD 350
Query: 301 ---------------KIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPE 345
+E WSV ++NDD +EVFD + A SN T K MNA E
Sbjct: 351 EADTPISPSMRMADKNLEDNKATWSVFDANDDFDEVFDFTNDAN--PSNSTDKQMNAKLE 408
Query: 346 SASPPASISASNFSH-PKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQF-PQKPID 403
++S +I+ S+ H P+P + +R +++ S+ P T NRY +SE +N+F P +D
Sbjct: 409 TSS-LENINLSDIMHGPRPVLDSTRTNSVPSSLTEPPPETLNRYRKSEPRNRFMPTTSMD 467
Query: 404 NLGSGTRESFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSD 463
N G G S R PQF +Q +Q + N+SPS G + GT+AS FRN +LP +
Sbjct: 468 NKGPGATNSLRLGPQFLNQGKQ--ARSDTNSSPSTGRTRQDGTDASVFRNLKLP---LHE 522
Query: 464 VP--------NTRASSYGIFSNPTANAPTGQGMAAD--RTKEGIPTQG 501
+P ++ SYG FS P A AP +A+ R++ +P QG
Sbjct: 523 IPMQEPSWPPSSPRPSYGNFSAPKAEAPGKLDPSANSARSEPRLPNQG 570
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 23/142 (16%)
Query: 412 SFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSDVPN----- 466
S RSEP+ P+Q +Q ++N PS G K + + S RNS+ P ++D P
Sbjct: 559 SARSEPRLPNQGKQSWS--DLNFVPSTGGTKQVPADTSVSRNSKPP---TNDGPKPEQSH 613
Query: 467 -----TRASSYGIFSNPTANAPTGQGMAAD--RTKEGIPTQG----TAGVRPNQNSPGLK 515
+ SSYGIFS A AP QGM+++ R KEG P++ +AG N N P K
Sbjct: 614 PVPPSSPTSSYGIFSASKATAPGKQGMSSEVNRNKEGNPSESARNPSAGGVFNANFPS-K 672
Query: 516 SDGSQTPGPD-NGQRKFGIFSR 536
SDGSQ + +GQ +G+FSR
Sbjct: 673 SDGSQRGAVNQDGQGGWGMFSR 694
>gi|449489738|ref|XP_004158401.1| PREDICTED: uncharacterized LOC101207030 [Cucumis sativus]
Length = 536
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 239/585 (40%), Positives = 317/585 (54%), Gaps = 98/585 (16%)
Query: 1 MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKP------FWESAVKTPN 54
MAF CR +QS+LK QFKR+Y Q ISH+ ++++ + E + P
Sbjct: 1 MAFFCRISQSKLKSFLDQFKRHYFQ-------ISHSAALDSRRTTHNVYGYVERIPRRPA 53
Query: 55 DFCNNVRFFAAPVQAQ--QKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALA 112
DF + RF+AAPVQ Q KK+EK+ SGPRLNDKI A FVRLV D+GH ++S +AL A
Sbjct: 54 DFADKFRFYAAPVQFQGNAKKEEKDKSGPRLNDKIKADFVRLVSDDGHTILSLRDALKRA 113
Query: 113 RSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGK 172
R L+ DLVEV +KANPPVCK+MDFH+EKY+K+++EKDR K+K ++ +KK KEVRF+GK
Sbjct: 114 RELKLDLVEVQQKANPPVCKLMDFHREKYKKQIREKDRVKSKVEMVMKKAGHKEVRFTGK 173
Query: 173 IEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGP 232
E+KDL+MKAD VKRLM++GYRVKC A + E +DLG LSRL LIED+++VE+GP
Sbjct: 174 TEEKDLRMKADMVKRLMERGYRVKCTA----RGGENQDLGALLSRLTALIEDVALVENGP 229
Query: 233 HVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSV-DIPTPAIHE 291
VE+ QA+ I+RHVKFGPSKKG G SKA+ + E+ V + TP +
Sbjct: 230 SVEKGQAFIIVRHVKFGPSKKG------------GGSKASKVVANAEQKVQNGSTPLVST 277
Query: 292 EDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASP-- 349
DP E G E E+ T W+V ++D +E FDL D +TS K MN + P
Sbjct: 278 VDP-EDGFESSEE--TTWTVDGTSDS-DEAFDLKDARNVITSTTATKKMNVVSDRDVPDS 333
Query: 350 -----------PASISASN-------FSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARS 391
+SI N +H +P + D+L S GP +
Sbjct: 334 GRTSSVPLFQQDSSIKTDNRPKKIEPMNHFQPPNSQGARDSLRS---GPQI--------R 382
Query: 392 EQKNQF-PQKPIDNLGSGTRESFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASN 450
E N+F P D G R+S RSEPQ QR PPPN N SP+M E + S
Sbjct: 383 EPMNRFQPPNVTDRYSRGARDSLRSEPQIRDQRWH--PPPNTNFSPTMRESRQYDNNTSV 440
Query: 451 FRN-------SRLPNSISSDVPNTRASSYGIFSNPTANAPTGQGMAADRTKEGIPTQGTA 503
RN + P + +S+GIFS+ +NAP K+ P G
Sbjct: 441 SRNINHSSNSTSTPAPSHHSDSSPSKTSFGIFSSSNSNAP---------GKQDPPATGYQ 491
Query: 504 GVR-------PNQNSPGLKSDGS--QTPGPDN---GQRKFGIFSR 536
G R N N+PG + T DN GQ+ +GIFS+
Sbjct: 492 GNRGPPYTRLTNPNAPGAAENTKFPITNTEDNSNKGQKSWGIFSK 536
>gi|255545486|ref|XP_002513803.1| translation initiation factor if-3, putative [Ricinus communis]
gi|223546889|gb|EEF48386.1| translation initiation factor if-3, putative [Ricinus communis]
Length = 572
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 234/568 (41%), Positives = 312/568 (54%), Gaps = 98/568 (17%)
Query: 1 MAFSCRTNQSRLKHLTHQFKRYYIQ--VPSL-NHSISHTKICEAKKPFWESA----VKTP 53
MAF R NQS+LK L+HQ KR Y Q PSL N++ + C + PF + + K P
Sbjct: 1 MAFWHRLNQSKLKLLSHQLKRSYAQPLYPSLLNYTTKTSNSCRLENPFLDVSKRPTCKMP 60
Query: 54 NDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALAR 113
ND CNNVRFFA QA+ K + GPRLND+I +QF+RLV DEGH VV R EAL A+
Sbjct: 61 NDSCNNVRFFATSFQAKTKDN-----GPRLNDQITSQFIRLVTDEGHGVVPRREALERAK 115
Query: 114 SLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKI 173
L+ DLVEVDR +PPVCKIMDF+KEKY+++ KEKDR K+KS++TL+KGDCKEVRFS K
Sbjct: 116 KLKLDLVEVDRNVDPPVCKIMDFNKEKYKQQSKEKDRVKSKSEVTLRKGDCKEVRFSAKT 175
Query: 174 EQKDLQMKADTVKRLMDKGYRVKCMALPVGKK----------EETED------------- 210
EQKDL++KAD+V RLM++GYRVKCMAL KK + TE+
Sbjct: 176 EQKDLKIKADSVIRLMERGYRVKCMALGSPKKGGRASKKHDGDLTEEEIAERIKQEEEEK 235
Query: 211 --LGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGV 268
L LSRL L+ D ++ESGP VE+KQAY ++RH KFG SKK G KK K V + +
Sbjct: 236 EELRATLSRLTALMGDEFIIESGPRVEKKQAYVLVRHAKFGQSKKVGAKKFKDVQEVANA 295
Query: 269 SKAATPSSTIERSV----DIPTPAIHEEDPA-----EFGLEKIEKKNTPWSVSNSNDDLN 319
+A S + S+ D A+ ED + E E T WS+++S D +
Sbjct: 296 KSSANHSGPVANSLMAEKDSSESAVETEDKILSDEDDVPDEICEDNKTTWSIADSTDGFD 355
Query: 320 EVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSHPKPAPNFSRADTLGSTPHG 379
F K S + + MN ++ S + S N PKPA + + L S+P
Sbjct: 356 GAFAHGTDDKD-PSIYCREDMNIPRKANSSGLNFSIPNVFQPKPAQD---SQQLPSSPQ- 410
Query: 380 PSLGTGNRYARSEQKNQFPQKPIDNLGS----------GTRESFRSEPQFP----SQRRQ 425
PSLGT NRY KP +LG+ GT ++ QFP R
Sbjct: 411 PSLGTINRY-----------KPQPSLGTEKKYKPPPSLGTENRYKVRQQFPLNTSRDSRG 459
Query: 426 PPPPPN-----------------MNASPSMGEKKPIGTEASNFRNSRLPNSI--SSDVP- 465
P P + +N + S+GE KP+ T++S FRN +LP + DVP
Sbjct: 460 PDKPASFGFEPRLSPRSGHSQSEINVTSSIGESKPVRTDSSAFRNMKLPPEMLKQLDVPS 519
Query: 466 --NTRASSYGIFSNPTANAPTGQGMAAD 491
++ ASS+G+FS+P A++P Q + A+
Sbjct: 520 GTSSPASSFGMFSSPKASSPGKQDVTAE 547
>gi|449458680|ref|XP_004147075.1| PREDICTED: uncharacterized protein LOC101207030 [Cucumis sativus]
Length = 566
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 244/605 (40%), Positives = 324/605 (53%), Gaps = 108/605 (17%)
Query: 1 MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKP------FWESAVKTPN 54
MAF CR +QS+LK QFKR+Y Q ISH+ ++++ + E + P
Sbjct: 1 MAFFCRISQSKLKSFLDQFKRHYFQ-------ISHSAALDSRRTTHNVYGYVERIPRRPA 53
Query: 55 DFCNNVRFFAAPVQAQ--QKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALA 112
DF + RF+AAPVQ Q KK+EK+ SGPRLNDKI A FVRLV D+GH ++S +AL A
Sbjct: 54 DFADKFRFYAAPVQFQGNAKKEEKDKSGPRLNDKIKADFVRLVSDDGHTILSLRDALKRA 113
Query: 113 RSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGK 172
R L+ DLVEV +KANPPVCK+MDFH+EKY+K+++EKDR K+K ++ +KK KEVRF+GK
Sbjct: 114 RELKLDLVEVQQKANPPVCKLMDFHREKYKKQIREKDRVKSKVEMVMKKAGHKEVRFTGK 173
Query: 173 IEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGP 232
E+KDL+MKAD VKRLM++GYRVKC A + E +DLG LSRL LIED+++VE+GP
Sbjct: 174 TEEKDLRMKADMVKRLMERGYRVKCTA----RGGENQDLGALLSRLTALIEDVALVENGP 229
Query: 233 HVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSV-DIPTPAIHE 291
VE+ QA+ I+RHVKFGPSKKG G SKA+ + E+ V + TP +
Sbjct: 230 SVEKGQAFIIVRHVKFGPSKKG------------GGSKASKVVANAEQKVQNGSTPLVST 277
Query: 292 EDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASP-- 349
DP E G E E+ T W+V ++D +E FDL D +TS K MN + P
Sbjct: 278 VDP-EDGFESSEE--TTWTVDGTSDS-DEAFDLKDDRNVITSTTATKKMNVVSDRDVPDS 333
Query: 350 -----------PASISASN-------FSHPKPAPNFSRADTLGSTPH--------GPSLG 383
+SI N +H +P + D+L S P P
Sbjct: 334 GRTSSVPLFQQDSSIKTDNRPKKIEPMNHFQPPNSQGARDSLRSGPQIREPVNRFQPPNA 393
Query: 384 TGNRYA-------RSEQK-----NQF-PQKPIDNLGSGTRESFRSEPQFPSQRRQPPPPP 430
T +RY+ RSE + N+F P D G R+S RSEPQ QR PPP
Sbjct: 394 T-DRYSQGARDSLRSEPQIREPMNRFQPPNVTDRYSRGARDSLRSEPQIRDQRWH--PPP 450
Query: 431 NMNASPSMGEKKPIGTEASNFRN-------SRLPNSISSDVPNTRASSYGIFSNPTANAP 483
N N SP+M E + S RN + P + +S+GIFS+ +NAP
Sbjct: 451 NTNFSPTMRESRQYDNNTSVSRNINHSSNSTSTPAPSHHSDSSPSKTSFGIFSSSNSNAP 510
Query: 484 TGQGMAADRTKEGIPTQGTAGVR-------PNQNSPGLKSDGS--QTPGPDN---GQRKF 531
K+ P G G R N N+PG + T DN GQ+ +
Sbjct: 511 ---------GKQDPPATGYQGNRGPPYTRLTNPNAPGAAENTKFPITNTEDNSNKGQKSW 561
Query: 532 GIFSR 536
GIFS+
Sbjct: 562 GIFSK 566
>gi|356534427|ref|XP_003535756.1| PREDICTED: uncharacterized protein LOC100306622 [Glycine max]
Length = 547
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 210/577 (36%), Positives = 288/577 (49%), Gaps = 83/577 (14%)
Query: 1 MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVK-TPNDFCNN 59
MAF R LK L QF+R Y+ P S K P S P N
Sbjct: 1 MAFWHRIRNPNLKTLCIQFQRCYVHRPH----ASTPKPFPVDIPHPNSVFHGRPTSVFNT 56
Query: 60 VRFFAAPVQAQQKKDEKETSGP-RLNDKINAQFVRLVLDEGHK-VVSRHEALALARSLQC 117
VRFFAAPVQ Q K + E S RLN+KI A +VRLV D+GH ++ R EAL A++L+
Sbjct: 57 VRFFAAPVQYQVKHNNVEDSSELRLNEKIKAPYVRLVADDGHHSILPRFEALEHAKTLKL 116
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVEVD+ A PPVCKIMDFHK+ Y+++ +EK+RAK+++++TL+K D KEVRFS K E KD
Sbjct: 117 DLVEVDKNAKPPVCKIMDFHKQMYRRQEREKERAKSRAEMTLRK-DVKEVRFSEKTEAKD 175
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERK 237
L+ KAD +K+LM+KGYRVKC GK E +DL S ++ L+ED+ +VESGPH+ +K
Sbjct: 176 LKNKADMIKKLMEKGYRVKCKV--SGK--ENQDLTVLFSPILALMEDVCIVESGPHMAKK 231
Query: 238 QAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDPAEF 297
A+ I+RH+K+G SKKGG KKL+ + T +E S + +I E AE
Sbjct: 232 DAFMIVRHIKYGLSKKGG-KKLQ------NATNVTTQEGDMEISTANSSDSIEYESHAES 284
Query: 298 GLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASN 357
G E E+ +S+ N + +T++ + NAAPE ASP +S +
Sbjct: 285 GFETEEE-----VLSDGNKLSKSSLSVFSNNVNMTASPNNQT-NAAPE-ASP---VSENR 334
Query: 358 FSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQFPQKP----IDNLGSGTRESF 413
+ S+ + + S P T NRY R E + +F Q ++ G G R++F
Sbjct: 335 YR--------SQENNVQSNAQVPPAVTENRYKRIEPRGRFQQTSNNTCMNYQGPGARDAF 386
Query: 414 RSEPQFPSQRRQPPPPPNMNASPSMGEKK----PIGTEAS-------------------- 449
RS P P+ R P N N +P + + P G S
Sbjct: 387 RSPP--PNWNRTRQAPVNANLNPRIENNRLAFTPPGPRHSMPSHENICNPPPNAPNTPRP 444
Query: 450 ---NFRNSRLPNSISSDVPNT-RASSYGIFSNPTANAPTGQGMAADRT----------KE 495
NF + + VPNT R+SSYG FS P P G + E
Sbjct: 445 GYGNFSSPSEGIPMHHGVPNTPRSSSYGNFSGPNEGIPRHPGAPITQRSSSYGNFSAPNE 504
Query: 496 GIPTQGTAGVRPNQNSPGLKS--DGSQTPGPDNGQRK 530
GIP +A P +S G S +G +T G G +
Sbjct: 505 GIPRHPSAPNTPRPSSYGNFSTPNGHETQGVKAGMHR 541
>gi|326487826|dbj|BAJ89752.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 528
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 167/243 (68%), Gaps = 13/243 (5%)
Query: 61 RFFAAPVQAQQK--KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCD 118
R FAAP Q +K KD + +G RLN+ I A F+RLV D GH VV RHEAL +A + D
Sbjct: 44 RSFAAPPQHVKKVFKDADDDAGHRLNNDITAPFLRLVTDGGHDVVPRHEALQMAARMGLD 103
Query: 119 LVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDL 178
LVEVDRK+NPPVCKIMDFHKEKY K++++K R K KS I L+ GD KEVRF K E KD+
Sbjct: 104 LVEVDRKSNPPVCKIMDFHKEKYNKDVQQKQRLKTKSAIALRGGDIKEVRFKAKTEIKDM 163
Query: 179 QMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQ 238
++KAD + RLM++GY+VKCMA+P G E EDLGG LSRL+ LI+D+ VESGPH++ K
Sbjct: 164 KVKADAITRLMERGYKVKCMAMPAG--NEAEDLGGPLSRLLGLIQDVCTVESGPHLDSKH 221
Query: 239 AYAIIRHVKFGPSKKGGLKKLKAVGDTS-GVSKAATPSSTIERSVDIPTPAIHEEDPAEF 297
AY I+RHVKF +KKGG K +A+ D S G AAT S+ T A ++ E
Sbjct: 222 AYVIVRHVKFA-TKKGGKKASQAIEDASKGTPHAATSESSA-------TSADSGDETNEH 273
Query: 298 GLE 300
GLE
Sbjct: 274 GLE 276
>gi|357138356|ref|XP_003570759.1| PREDICTED: uncharacterized protein LOC100844078 [Brachypodium
distachyon]
Length = 521
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 147/192 (76%), Gaps = 5/192 (2%)
Query: 60 VRFFAAP---VQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQ 116
R FAAP V+ K ++ + +GPR+N+ I A F+RLV D+GH VV RHEAL LA +
Sbjct: 48 CRPFAAPPQHVKKNTKDEDDDAAGPRINNDITAPFLRLVTDQGHDVVPRHEALQLAARMG 107
Query: 117 CDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQK 176
DLVEV RK++PPVCKIMDFHKE+Y K++KEK+R K KS I L+ G+ KEVRF GK E K
Sbjct: 108 MDLVEVHRKSDPPVCKIMDFHKERYNKDVKEKERLKTKSAIVLRGGENKEVRFKGKTEIK 167
Query: 177 DLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVER 236
DL++KAD + RLM++GYRVKCMA+P G +E EDLGG LSRL+ LI+D+ +VESGPH++
Sbjct: 168 DLKVKADAITRLMERGYRVKCMAMPAGNEE--EDLGGPLSRLLGLIQDVCIVESGPHLDS 225
Query: 237 KQAYAIIRHVKF 248
K AY I+RHVKF
Sbjct: 226 KHAYVIVRHVKF 237
>gi|242084348|ref|XP_002442599.1| hypothetical protein SORBIDRAFT_08g022730 [Sorghum bicolor]
gi|241943292|gb|EES16437.1| hypothetical protein SORBIDRAFT_08g022730 [Sorghum bicolor]
Length = 502
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 125/224 (55%), Positives = 156/224 (69%), Gaps = 5/224 (2%)
Query: 60 VRFFAAP--VQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQC 117
R FAAP Q +K+ ++E GPRLN+ I A VRLV DEGH VV HEAL LA +
Sbjct: 50 CRHFAAPPGTQVNKKRGKEEDEGPRLNNAITAPLVRLVTDEGHNVVPLHEALQLASRMDM 109
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVEVDRK PP KIMDFHKE Y+KE K K+R KAKS I L+ G+ KEVRF GK E KD
Sbjct: 110 DLVEVDRKLYPPAVKIMDFHKEMYKKETKVKERLKAKSAIVLRGGENKEVRFKGKTELKD 169
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERK 237
L +KAD + RLM++GYRVKCMA+P G E EDLG LSRL+ LI+D+ +VESGPH++ K
Sbjct: 170 LMVKADGITRLMERGYRVKCMAMPSG--NEGEDLGTPLSRLLGLIQDVCIVESGPHLDSK 227
Query: 238 QAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERS 281
AY I+RHVKF +KKGG K +A+ ++ + +A S ++ S
Sbjct: 228 HAYVIVRHVKFA-TKKGGKKASQAIEESGKGTSSAVSESIVDGS 270
>gi|115443613|ref|NP_001045586.1| Os02g0101100 [Oryza sativa Japonica Group]
gi|41052888|dbj|BAD07800.1| translation initiation factor 3 (IF-3)-like protein [Oryza sativa
Japonica Group]
gi|41053222|dbj|BAD08183.1| translation initiation factor 3 (IF-3)-like protein [Oryza sativa
Japonica Group]
gi|113535117|dbj|BAF07500.1| Os02g0101100 [Oryza sativa Japonica Group]
gi|215695533|dbj|BAG90724.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189858|gb|EEC72285.1| hypothetical protein OsI_05453 [Oryza sativa Indica Group]
gi|222621989|gb|EEE56121.1| hypothetical protein OsJ_04988 [Oryza sativa Japonica Group]
Length = 519
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/189 (60%), Positives = 146/189 (77%), Gaps = 5/189 (2%)
Query: 60 VRFFAAPVQAQQK--KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQC 117
R FAAP Q ++ KD+ + GPR+N+ I + FVRLV D+GH VV RHEAL LA +
Sbjct: 43 ARTFAAPPQVMKRSTKDD-DDDGPRINNDITSPFVRLVTDQGHSVVPRHEALQLAARMDL 101
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVEV RK++PPVCKIMDFHKEKY+K++KEK+R K KS I L+ G+ KEVRF GK E KD
Sbjct: 102 DLVEVHRKSDPPVCKIMDFHKEKYKKDVKEKERLKTKSAIVLRGGENKEVRFKGKTELKD 161
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERK 237
L++KAD + RLM++GYRVKCMA+P G +E EDLGG LSRL+ LI+D+ +VESGPH++ K
Sbjct: 162 LKVKADGITRLMERGYRVKCMAMPSGNEE--EDLGGPLSRLLGLIQDVCIVESGPHLDSK 219
Query: 238 QAYAIIRHV 246
AY I+RHV
Sbjct: 220 HAYVIVRHV 228
>gi|359474836|ref|XP_002277979.2| PREDICTED: translation initiation factor IF-3-like [Vitis vinifera]
Length = 236
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 125/215 (58%), Positives = 160/215 (74%), Gaps = 18/215 (8%)
Query: 1 MAFSCRTNQSRLKH--LTHQFKRYYIQVPSLNHSISHT---KICEAKKPFWESAVKTPND 55
M+F R NQ +LK LT QFKR +Q+P HS+++T I + P W + + P+D
Sbjct: 1 MSFWHRINQPKLKWQTLTRQFKRCSLQIPH-AHSLNNTPRQTIRGFENPCWVNR-RNPSD 58
Query: 56 FCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSL 115
FC NVRFFAAPVQA+ K++EK+ SGPR+ND+I A FVRLV D+GH++VSR AL AR L
Sbjct: 59 FCYNVRFFAAPVQAKPKQEEKDASGPRMNDQIRADFVRLVTDDGHEIVSRMVALERARKL 118
Query: 116 QCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKA-----------KSDITLKKGDC 164
+ DLVEV RKA+PPVCKIMDFH+EKY++++KEKDR K+ KS++TL+KGDC
Sbjct: 119 KLDLVEVQRKADPPVCKIMDFHREKYKQQIKEKDRTKSKAIEAYALALLKSELTLRKGDC 178
Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KEVRFSGK E KDL+MKAD VKRLMD+GYRVK ++
Sbjct: 179 KEVRFSGKTEAKDLKMKADMVKRLMDRGYRVKVLS 213
>gi|356574143|ref|XP_003555211.1| PREDICTED: translation initiation factor IF-3-like [Glycine max]
Length = 310
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 145/303 (47%), Positives = 191/303 (63%), Gaps = 19/303 (6%)
Query: 1 MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVK-TPNDFCNN 59
MAF R LK L QF+R YI +P H+ S K P S P N
Sbjct: 1 MAFWHRIRNPNLKTLCIQFQRCYIHLP---HA-STPKPFPVDIPHQNSVFHGRPTSVFNT 56
Query: 60 VRFFAAPVQAQQKKDEKETSGP-RLNDKINAQFVRLVLDEGHK-VVSRHEALALARSLQC 117
VRFFAAP+Q Q K +E SG RLN+KI A +VRLV+D+GH +V R EAL A++L+
Sbjct: 57 VRFFAAPLQYQVKHKNEEDSGDLRLNEKIKAPYVRLVVDDGHHSIVPRFEALERAKTLKL 116
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVEVD+ A PPVCKIMDFHK+ Y+++ +EK+RAK+K+++TL+K D KEVRFS K E KD
Sbjct: 117 DLVEVDKNAKPPVCKIMDFHKQMYKRQEREKERAKSKAEMTLRK-DVKEVRFSEKTEAKD 175
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERK 237
L+ KAD +K+LM+KGYRVKC V KE+ +DL S ++ L+ED+ +VESGPH+ +K
Sbjct: 176 LKNKADMIKKLMEKGYRVKC---KVSGKED-QDLTVLFSPILALMEDVCIVESGPHMGKK 231
Query: 238 QAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDPAEF 297
A+ I+RH+K+G SKKGG K A D S +E+S + +I E AE
Sbjct: 232 DAFMIVRHIKYGLSKKGGKKLQNATNDNS-------QEGDMEKSTANSSDSIEYESHAES 284
Query: 298 GLE 300
G E
Sbjct: 285 GFE 287
>gi|212276222|ref|NP_001130770.1| uncharacterized protein LOC100191874 [Zea mays]
gi|194690072|gb|ACF79120.1| unknown [Zea mays]
Length = 485
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/226 (57%), Positives = 166/226 (73%), Gaps = 8/226 (3%)
Query: 61 RFFAAP--VQAQQKKDEKE---TSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSL 115
R FAAP Q +K+ ++E ++GPR+N+ I A FVRLV+DEGH ++ RHEAL LA +
Sbjct: 48 RHFAAPPGTQTNRKRGKEEDDASAGPRMNNAIAAPFVRLVMDEGHNILPRHEALQLAIRM 107
Query: 116 QCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQ 175
DLVEVDRK++PPVCKIMDFH+EKY+KE KEK+R K KS I L+ G+ KEVRF GK E
Sbjct: 108 DMDLVEVDRKSDPPVCKIMDFHREKYKKETKEKERLKTKSAIVLRGGENKEVRFKGKTEL 167
Query: 176 KDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVE 235
KDL +KAD + RLM++GYRVKCMA+P G E EDLG LSRL+ LI+D+ +VESGPH++
Sbjct: 168 KDLMVKADGITRLMERGYRVKCMAMPSG--NEGEDLGTPLSRLLGLIQDVCIVESGPHLD 225
Query: 236 RKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERS 281
K AY I+RHVKF +KKGG K +A+ D + +A P S I+ S
Sbjct: 226 SKHAYVIVRHVKFA-TKKGGKKASQAMEDAGKGTSSAVPESPIDGS 270
>gi|30693047|ref|NP_174696.2| translation initiation factor IF-3 [Arabidopsis thaliana]
gi|45773942|gb|AAS76775.1| At1g34360 [Arabidopsis thaliana]
gi|332193581|gb|AEE31702.1| translation initiation factor IF-3 [Arabidopsis thaliana]
Length = 520
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 180/539 (33%), Positives = 249/539 (46%), Gaps = 83/539 (15%)
Query: 1 MAFSCRTNQSRLKHLTHQFKR-YYIQV--PSLNHSISHT-KICEAKKPFWESAVKTPNDF 56
MA N+S LK+ ++Q R YY QV S H + T K+ P + + P++
Sbjct: 1 MAIWRIINRSYLKYASNQLTRNYYTQVCLASSTHVVKQTTKLSSFDIPNSDICTR-PSNI 59
Query: 57 CNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQ 116
N+RF A Q ++K+ E ++ GPRLN+KI +VRLV +EGH VVS EAL A+ LQ
Sbjct: 60 FQNLRFLATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREALRRAKELQ 119
Query: 117 CDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQK 176
CDLVEV R A PPVCKI+ + E Y+K K+RAKAK ++ D KE+RF+ KIE K
Sbjct: 120 CDLVEVQRDAKPPVCKIVKYSLELYKKAKVGKERAKAKRAEAIRP-DIKEIRFTPKIEAK 178
Query: 177 DLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLS---RLIDLIEDISVVESGPH 233
DL+ K+D +LM+ GYRVKC+A+P K + + L R I D ++VES P
Sbjct: 179 DLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEKLLELLFRFTCFIGD-ALVESWPE 237
Query: 234 VERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPS--------STIERSVDIP 285
+RK A I+RH KFGP KKGG+K +K + S K +P +T++ DI
Sbjct: 238 ADRKGAVVIVRHAKFGPPKKGGVKLMKDIDIKSARVKEESPKPDSSKAGVATVDDQEDI- 296
Query: 286 TPAIHEEDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPE 345
E+ F +E+ + P N+ + + G S F P+ N
Sbjct: 297 -----EKSEPRFSVEQAQ----PVKFQNAYAKREPSSEFSGGRDA--SRFEPQSPNQHVN 345
Query: 346 SASPPASISASNFSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQFPQKP---- 401
P S A N +P F + P P N+ QFP +P
Sbjct: 346 PQRPRFSNQAPN---QQPTGRFD-PQSPNQPPSAPRPQFPNQQPTGRFDPQFPSQPPRPQ 401
Query: 402 IDNLGSGTRESFRSEPQFPSQR---------------------------RQPPPPPNMNA 434
N + + R PQFP+QR RQ PPP N
Sbjct: 402 FPNQAPNQQSTGRFNPQFPNQRPSPPQSRFPDQAPNQQPSGPSPNRHPDRQGPPPRFQNQ 461
Query: 435 SPSMGEKKPIG---------TEASNFRNSRLPNSISSDVPNT------RASSYGIFSNP 478
+P+ ++P G A +RLPN S++ P AS YGIFS P
Sbjct: 462 APN---QQPTGRFEPQPPNPPRAPPRPQTRLPNETSNEQPTAPGRSSGPASGYGIFSTP 517
>gi|12323859|gb|AAG51900.1|AC023913_8 transcription factor, putative; 66207-62663 [Arabidopsis thaliana]
Length = 574
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 158/474 (33%), Positives = 220/474 (46%), Gaps = 66/474 (13%)
Query: 1 MAFSCRTNQSRLKHLTHQFKR-YYIQV--PSLNHSISHT-KICEAKKPFWESAVKTPNDF 56
MA N+S LK+ ++Q R YY QV S H + T K+ P + + P++
Sbjct: 1 MAIWRIINRSYLKYASNQLTRNYYTQVCLASSTHVVKQTTKLSSFDIPNSDICTR-PSNI 59
Query: 57 CNNVRFFAAPVQ----------------------------AQQKKDEKETSGPRLNDKIN 88
N+RF A Q + +K+ E ++ GPRLN+KI
Sbjct: 60 FQNLRFLATSAQIALDDKYGRSGTLQDFCVMLLNSTTLDVSMKKEAEVDSDGPRLNEKIT 119
Query: 89 AQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEK 148
+VRLV +EGH VVS EAL A+ LQCDLVEV R A PPVCKI+ + E Y+K K
Sbjct: 120 GDYVRLVSEEGHCVVSLREALRRAKELQCDLVEVQRDAKPPVCKIVKYSLELYKKAKVGK 179
Query: 149 DRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEET 208
+RAKAK ++ D KE+RF+ KIE KDL+ K+D +LM+ GYRVKC+A+P K +
Sbjct: 180 ERAKAKRAEAIRP-DIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDKHKE 238
Query: 209 EDLGGYLS---RLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDT 265
+ L R I D ++VES P +RK A I+RH KFGP KKGG+K +K +
Sbjct: 239 LEPEKLLELLFRFTCFIGD-ALVESWPEADRKGAVVIVRHAKFGPPKKGGVKLMKDIDIK 297
Query: 266 SGVSKAATPS--------STIERSVDIPTPAIHEEDPAEFGLEKIEKKNTPWSVSNSNDD 317
S K +P +T++ DI E+ F +E+ + P N+
Sbjct: 298 SARVKEESPKPDSSKAGVATVDDQEDI------EKSEPRFSVEQAQ----PVKFQNAYAK 347
Query: 318 LNEVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSHPKPAPNFSRADTLGSTP 377
+ + G S F P+ N P S A N +P F + P
Sbjct: 348 REPSSEFSGGRDA--SRFEPQSPNQHVNPQRPRFSNQAPN---QQPTGRFD-PQSPNQPP 401
Query: 378 HGPSLGTGNRYARSEQKNQFPQKP----IDNLGSGTRESFRSEPQFPSQRRQPP 427
P N+ QFP +P N + + R PQFP+QR PP
Sbjct: 402 SAPRPQFPNQQPTGRFDPQFPSQPPRPQFPNQAPNQQSTGRFNPQFPNQRPSPP 455
>gi|255629107|gb|ACU14898.1| unknown [Glycine max]
Length = 202
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 129/207 (62%), Gaps = 8/207 (3%)
Query: 1 MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVK-TPNDFCNN 59
MAF R LK L QF+R Y+ P S K P S P N
Sbjct: 1 MAFWHRIRNPNLKTLCIQFQRCYVHRPH----ASTPKPFPVDIPHPNSVFHGRPTSVFNT 56
Query: 60 VRFFAAPVQAQQKKDEKETSGP-RLNDKINAQFVRLVLDEGHK-VVSRHEALALARSLQC 117
VRFFAAPVQ Q K + E S RLN+KI A +VRLV D+GH ++ R EAL A++L+
Sbjct: 57 VRFFAAPVQYQVKHNNVEDSSELRLNEKIKAPYVRLVADDGHHSILPRFEALEHAKTLKL 116
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVEVD+ A PPVCKIMDFHK+ Y+++ +EK+RAK+++++TL+K D KEVRFS K E KD
Sbjct: 117 DLVEVDKNAKPPVCKIMDFHKQMYRRQEREKERAKSRAEMTLRK-DVKEVRFSEKTEAKD 175
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGK 204
L+ KAD +K+LM+KG + + GK
Sbjct: 176 LKNKADMIKKLMEKGLSSEVQGIGQGK 202
>gi|414877625|tpg|DAA54756.1| TPA: hypothetical protein ZEAMMB73_123812 [Zea mays]
Length = 485
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 91/128 (71%), Gaps = 3/128 (2%)
Query: 154 KSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG 213
KS I L+ G+ KEVRF GK E KDL +KAD + RLM++GYRVKCMA+P G E EDLG
Sbjct: 146 KSAIVLRGGENKEVRFKGKTELKDLMVKADGITRLMERGYRVKCMAMPSGN--EGEDLGT 203
Query: 214 YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAAT 273
LSRL+ LI+D+ +VESGPH++ K AY I+RHVKF +KKGG K +A+ D + +A
Sbjct: 204 PLSRLLGLIQDVCIVESGPHLDSKHAYVIVRHVKFA-TKKGGKKASQAMEDAGKGTSSAV 262
Query: 274 PSSTIERS 281
P S I+ S
Sbjct: 263 PESPIDGS 270
>gi|168004365|ref|XP_001754882.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693986|gb|EDQ80336.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 127/213 (59%), Gaps = 20/213 (9%)
Query: 49 AVKTPNDFCNNVRFFAAPVQAQQKKD----------------EKETSGPRLNDKINAQFV 92
AV+ P F N+ R FAAPV E S ++N I A+ V
Sbjct: 62 AVEVPWSFRNS-RGFAAPVVTGGSGGGSSSSSSSSNIKGGNGEGNRSDRKINRAIVARMV 120
Query: 93 RLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAK 152
RLV +GH+++SR+EAL A+ DLVEVD KA+PPVCK+MDF +E+++ + +EKD K
Sbjct: 121 RLVGADGHEILSRYEALNRAQQEGLDLVEVDGKADPPVCKLMDFSRERFKVKKQEKDLRK 180
Query: 153 AKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG 212
+ + + D KEVRFS + EQKDL+MKAD V RL+ +G+RVK +A+ ++ E++G
Sbjct: 181 KQLE-RRRLDDLKEVRFSSRTEQKDLEMKADVVTRLLTRGHRVK-LAVQFHGNDKGEEVG 238
Query: 213 -GYLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
L R + L+ VE+GP VE+ +A+ +IR
Sbjct: 239 VELLERAMRLLGVEVKVENGPRVEKMRAWVMIR 271
>gi|168019592|ref|XP_001762328.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686406|gb|EDQ72795.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 121/191 (63%), Gaps = 9/191 (4%)
Query: 61 RFFAAPVQAQQKK-----DEKETSGPR-LNDKINAQFVRLVLDEGHKVVSRHEALALARS 114
RF+A PV A + + G R +N I A+ VRLV D ++++SR+EAL A+
Sbjct: 70 RFYAVPVAAGRSDGNGVGSREGIKGERKINRAIVARMVRLVGDGSNEILSRYEALNRAQQ 129
Query: 115 LQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIE 174
DLVEVD KA+PPVCK+MDF KE+++ + +EKD K + + + D KEVRFS + E
Sbjct: 130 AGLDLVEVDGKADPPVCKLMDFSKERFKVKKQEKDLRKKQLE-RRRLDDLKEVRFSSRTE 188
Query: 175 QKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPH 233
QKDL MKAD V RL+ +G+RVK + G ++ E++G L R ++L++ VE+GP
Sbjct: 189 QKDLDMKADVVTRLLVRGHRVKLVVQFHG-NDKGEEVGVKLLERAMNLLQAEFKVENGPR 247
Query: 234 VERKQAYAIIR 244
VE+ +A+ +IR
Sbjct: 248 VEKMRAWVMIR 258
>gi|302790928|ref|XP_002977231.1| hypothetical protein SELMODRAFT_417117 [Selaginella moellendorffii]
gi|300155207|gb|EFJ21840.1| hypothetical protein SELMODRAFT_417117 [Selaginella moellendorffii]
Length = 270
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 114/175 (65%), Gaps = 13/175 (7%)
Query: 80 GPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
GPR+N I +F+RLV EGHKVV+R EAL LA DLVEVD P VCK+MD+ KE
Sbjct: 69 GPRMNRAIADRFIRLVDSEGHKVVTREEALGLAEKQGLDLVEVDPSKEPVVCKLMDYKKE 128
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK-CM 198
KY+++++EK+R K + + + D KE++ + KIE++DL+MKAD +L+ +G+R+K +
Sbjct: 129 KYKEKVREKERKKTNLE-SRRLSDLKELQVTSKIEERDLEMKADMASKLIQRGHRLKFVV 187
Query: 199 ALPVGKKEETEDLG---------GYLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
LP K +D G + RLI+L++D+S +E GP ER +A+AI+R
Sbjct: 188 KLP--NKPVKDDEGPVRSDPKALKLIDRLIELLKDVSKLEQGPQSERHRAWAILR 240
>gi|295395436|ref|ZP_06805635.1| translation initiation factor IF3 [Brevibacterium mcbrellneri ATCC
49030]
gi|294971758|gb|EFG47634.1| translation initiation factor IF3 [Brevibacterium mcbrellneri ATCC
49030]
Length = 245
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 8/195 (4%)
Query: 56 FCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALAR 113
F FF AP+ + E+ S PR+ND+I VRLV G +V V+ +AL LAR
Sbjct: 15 FVQRGAFFCAPLVNNHLEKEQHISEPRINDRIRVPEVRLVGPNGEQVGIVAIRKALDLAR 74
Query: 114 SLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKI 173
S DLVEV +A PPV K+MD+ K KY+ K ++ K ++++ L KE+RF KI
Sbjct: 75 SADLDLVEVAPQAKPPVVKLMDYGKFKYESAQKAREARKNQANMAL-----KEIRFRLKI 129
Query: 174 EQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ D + K V R + G +VK M + G+++ ++G L++L D + D+ VES P
Sbjct: 130 DDHDYETKKGHVSRFLSGGDKVKVMIMFRGREQSRPEMGMKLLNKLADEVADLGTVESAP 189
Query: 233 HVERKQAYAIIRHVK 247
V+ + +I VK
Sbjct: 190 RVDGRNMVMVIAPVK 204
>gi|427430188|ref|ZP_18920083.1| Translation initiation factor 3 [Caenispirillum salinarum AK4]
gi|425878941|gb|EKV27651.1| Translation initiation factor 3 [Caenispirillum salinarum AK4]
Length = 173
Score = 102 bits (255), Expect = 4e-19, Method: Composition-based stats.
Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+ND IN Q VRL+ EG +V H EAL +A DLVEV A+PPVCKI+D+
Sbjct: 9 GPRVNDAINVQQVRLIDAEGEQVGVVHIREALEMAEEAGLDLVEVSPNADPPVCKILDYG 68
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+ + K+K A+ K + + KEV+ I++ D Q+K VKR ++ G +VKC
Sbjct: 69 KFKYESQ-KKKAEARKKQKVV----EVKEVKLRPNIDENDYQVKMRNVKRFLEAGDKVKC 123
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ D ED++ VE P +E +Q ++
Sbjct: 124 TLRFRGREMAHQDLGMKVLMRVRDEFEDVAKVEQHPKMEGRQMVMVM 170
>gi|184201213|ref|YP_001855420.1| translation initiation factor IF-3 [Kocuria rhizophila DC2201]
gi|183581443|dbj|BAG29914.1| translation initiation factor IF-3 [Kocuria rhizophila DC2201]
Length = 314
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 8/172 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
S PR+ND+I VRLV G +V V +AL LAR DLVEV A PPV K+MDF
Sbjct: 2 SDPRINDRIRVPEVRLVGPGGEQVGIVRVQDALRLARESDLDLVEVAPNAKPPVAKLMDF 61
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ +K ++ K +++ L KEVRF KI+ D + K KR + G +VK
Sbjct: 62 GKYKYEAAVKARESRKNQANTVL-----KEVRFRLKIDTHDYETKVGHAKRFLSAGDKVK 116
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
M G++++ +G L RL + + ++ VVE+ P V+ + +I +K
Sbjct: 117 AMIQFRGREQQRPAMGVRLLERLAEDVAEVGVVETAPRVDGRNMVMVIGPLK 168
>gi|296129471|ref|YP_003636721.1| translation initiation factor IF-3 [Cellulomonas flavigena DSM
20109]
gi|296021286|gb|ADG74522.1| translation initiation factor IF-3 [Cellulomonas flavigena DSM
20109]
Length = 415
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 63 FAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLV 120
F P + +E S PR+ND+I VRLV G +V V +AL LA+ DLV
Sbjct: 59 FLVPGVHHDEPEEHHISEPRINDRIRVAEVRLVGPNGEQVGIVRLEDALRLAQDADLDLV 118
Query: 121 EVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQM 180
EV A PPVCKIMDF K KY+ ++K ++ + +++ L KE+RF KI+ D
Sbjct: 119 EVAPTARPPVCKIMDFGKFKYEADMKAREARRNQANTIL-----KEIRFRLKIDPHDYGT 173
Query: 181 KADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQA 239
K V+R + G +VK M + G+++ ++G L RL + ++ +ES P + +
Sbjct: 174 KKGHVERFLKAGDKVKVMIMFRGREQSRPEMGVRLLQRLAADVAELGFIESMPKQDGRNM 233
Query: 240 YAIIRHVKFGPSKK 253
++ GP+KK
Sbjct: 234 IMVL-----GPTKK 242
>gi|152967113|ref|YP_001362897.1| translation initiation factor IF-3 [Kineococcus radiotolerans
SRS30216]
gi|151361630|gb|ABS04633.1| translation initiation factor IF-3 [Kineococcus radiotolerans
SRS30216]
Length = 277
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 8/172 (4%)
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCK 132
E+ S PR+ND+I VRLV G +V V +AL LA DLVEV A PPVCK
Sbjct: 46 EQHISEPRINDRIRVPEVRLVGPNGEQVGIVRVEDALRLADEAGLDLVEVAPTARPPVCK 105
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
+MDF K KY+ ++K ++ K +S+ L KE+RF KI+ D K V+R + G
Sbjct: 106 LMDFGKFKYESDMKAREARKNQSNTIL-----KEIRFRLKIDPHDYATKKGHVERFLKAG 160
Query: 193 YRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK M + G+++ ++G L RL + + D+ VES P + + +I
Sbjct: 161 DKVKVMIMFRGREQSRPEMGFRLLQRLAEDVSDLGGVESSPRQDGRNMVMVI 212
>gi|224103163|ref|XP_002312949.1| predicted protein [Populus trichocarpa]
gi|222849357|gb|EEE86904.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 70/102 (68%), Gaps = 4/102 (3%)
Query: 1 MAFSCRTNQSRLKHLTHQFKRYYIQVP---SLNHSISHTKICEAKKPFWESAVKTPNDFC 57
MAF RTNQS+L L+ Q K YY+Q+P SL ++ + ++ + P + +K ++FC
Sbjct: 1 MAFWIRTNQSKLIFLSKQLKIYYLQIPYDSSLKYTATSSRSRVLENPVCD-FIKKHSEFC 59
Query: 58 NNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG 99
NNVRFFAAPVQA+ K+EK SGPRLN+KI A VRLV DEG
Sbjct: 60 NNVRFFAAPVQAKVNKEEKTLSGPRLNEKITAPVVRLVGDEG 101
>gi|116670038|ref|YP_830971.1| translation initiation factor 3 [Arthrobacter sp. FB24]
gi|116610147|gb|ABK02871.1| bacterial translation initiation factor 3 (bIF-3) [Arthrobacter sp.
FB24]
Length = 396
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
S PR+N++I VRLV G +V V +AL LA DLVEV +A PPVCK+MDF
Sbjct: 25 SEPRINERIRVPEVRLVGPAGEQVGIVRIEDALRLAAESDLDLVEVAPQAKPPVCKLMDF 84
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ +K ++ K +++ L KE+RF KI+ D + K R + G +VK
Sbjct: 85 GKYKYEAAVKAREARKNQTNTVL-----KEIRFRLKIDTHDYETKRGHALRFLGAGDKVK 139
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
M G++++ ++G L R D + ++ VVES P ++ + ++
Sbjct: 140 AMIQFRGREQQRPEMGIRLLQRFADDVAEVGVVESSPRIDGRNMVMVV 187
>gi|269795538|ref|YP_003314993.1| translation initiation factor 3 [Sanguibacter keddieii DSM 10542]
gi|269097723|gb|ACZ22159.1| bacterial translation initiation factor 3 (bIF-3) [Sanguibacter
keddieii DSM 10542]
Length = 329
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 63 FAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV-VSRHE-ALALARSLQCDLV 120
F P + + E S PR+ND+I VRLV G +V V R E AL+LA+ DLV
Sbjct: 4 FPVPDELPTRHKEHHISEPRINDRIRVPEVRLVGPGGEQVGVVRIEVALSLAQDADLDLV 63
Query: 121 EVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQM 180
EV A PPVCK+MD+ K KY+ ++K ++ + +++ L KE+RF KI+ D
Sbjct: 64 EVAPDARPPVCKLMDYGKFKYESDMKAREARRNQANTVL-----KEIRFRLKIDPHDYGT 118
Query: 181 KADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQA 239
K V+R + G +VK M + G+++ ++G L RL + ++++ +ES P + +
Sbjct: 119 KKGHVERFLSAGDKVKVMIMFRGREQSRPEMGVRLLQRLAEDVQELGFIESMPKQDGRNM 178
Query: 240 YAIIRHVKFGPSKK 253
++ GP+KK
Sbjct: 179 IMVL-----GPTKK 187
>gi|220912249|ref|YP_002487558.1| translation initiation factor IF-3 [Arthrobacter chlorophenolicus
A6]
gi|219859127|gb|ACL39469.1| translation initiation factor IF-3 [Arthrobacter chlorophenolicus
A6]
Length = 356
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
S PR+N++I VRLV G +V V +AL LA DLVEV +A PPVCK+MDF
Sbjct: 14 SEPRINERIRVPEVRLVGPAGEQVGIVRIEDALRLAAESDLDLVEVAPQAKPPVCKLMDF 73
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ +K ++ K +++ L KE+RF KI+ D + K R + G +VK
Sbjct: 74 GKYKYEAAVKAREARKNQTNTVL-----KEIRFRLKIDTHDYETKRGHALRFLGAGDKVK 128
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
M G++++ ++G L R D + ++ VVES P ++ + ++
Sbjct: 129 AMIQFRGREQQRPEMGIRLLQRFADDVAEVGVVESSPRIDGRNMVMVV 176
>gi|152989861|ref|YP_001355583.1| translation initiation factor IF-3 [Nitratiruptor sp. SB155-2]
gi|166198959|sp|A6Q167.1|IF3_NITSB RecName: Full=Translation initiation factor IF-3
gi|151421722|dbj|BAF69226.1| translation initiation factor IF-3 [Nitratiruptor sp. SB155-2]
Length = 177
Score = 94.0 bits (232), Expect = 2e-16, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++I+A VR V D+G + +VSR EAL +A DLV + ANPPVCKIMD+ K K
Sbjct: 10 LNEQIDAPEVRCVGDDGTQYGIVSRDEALKIAEQKGLDLVLIAPNANPPVCKIMDYGKFK 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K K+ K ++ I + KE++ S KI Q D+ K + ++KG VK
Sbjct: 70 YQQEKKLKEAKKKQTKI-----EVKEIKLSVKIAQNDIDYKVKHAREFLEKGKHVKFRVF 124
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ + G L ++I LIEDI VVE PH+E
Sbjct: 125 LRGREMAHPEAGVEVLEKIIPLIEDIGVVEKKPHLE 160
>gi|296133380|ref|YP_003640627.1| translation initiation factor IF-3 [Thermincola potens JR]
gi|296031958|gb|ADG82726.1| translation initiation factor IF-3 [Thermincola potens JR]
Length = 173
Score = 93.6 bits (231), Expect = 2e-16, Method: Composition-based stats.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VRLV +G + +V EAL A+ DLVEV A PPVC+IMD+ K
Sbjct: 9 RINEEIRAKEVRLVSSDGEQLGIVPLKEALRFAQEKDLDLVEVAPSAKPPVCRIMDYGKY 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ +EK+ K + I + KE++ IE DL K + + R + G +VK
Sbjct: 69 KYEQSKREKEARKKQKIINV-----KEIKLRPNIEAHDLVTKTNNIVRFLKDGDKVKVTV 123
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ DLG L +++D ++DI++VE P VE + I+
Sbjct: 124 MFRGREMAHTDLGKQLLDKVVDQLKDITIVERQPKVEGRNMVMIL 168
>gi|291287862|ref|YP_003504678.1| translation initiation factor IF-3 [Denitrovibrio acetiphilus DSM
12809]
gi|290885022|gb|ADD68722.1| translation initiation factor IF-3 [Denitrovibrio acetiphilus DSM
12809]
Length = 184
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 99/166 (59%), Gaps = 8/166 (4%)
Query: 82 RLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI VRL+LD+G H V S EA ALA DLVE+ A PPVC++MD+ K
Sbjct: 15 RINEKIPHSEVRLILDDGTQHGVCSMTEARALADQAGLDLVEIAPTAKPPVCRVMDYSKF 74
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K++K K+++ R K +++ + D KEV+F KIE+ D ++K VK+ + G +VK +
Sbjct: 75 KFEKNKKDREARKKQRAN----QVDTKEVKFRPKIEEHDYEVKMKNVKKFLSAGDKVKVV 130
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +++G L+R+ D IE + V+ P ++ +Q ++
Sbjct: 131 LRYRGREMMFQEMGLQLLNRIKDDIEGLGTVDKKPEMQGRQQIMMV 176
>gi|306818550|ref|ZP_07452273.1| translation initiation factor IF3 [Mobiluncus mulieris ATCC 35239]
gi|304648723|gb|EFM46025.1| translation initiation factor IF3 [Mobiluncus mulieris ATCC 35239]
Length = 362
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I + VR++ G + VV+ +AL LA++ DLVEV +A+PPVCK+MDF K
Sbjct: 20 RVNDQIRVREVRVIGQNGEQIGVVAIGKALILAQNAGLDLVEVAPEAHPPVCKLMDFGKY 79
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K +D + ++ L KE+R KI+Q D ++K ++R +D G +VK M
Sbjct: 80 KYEAAQKARDAKRNQASTQL-----KEIRLGLKIDQHDYEVKLGHMRRFLDGGDKVKVMI 134
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G+++ ++G ++RL + I + +VES P + + ++ VK
Sbjct: 135 RFRGREQSRPEMGVKLMNRLAEDIAEDGIVESTPRQDGRNMTMVLAPVK 183
>gi|269978175|ref|ZP_06185125.1| translation initiation factor IF-3 [Mobiluncus mulieris 28-1]
gi|307700704|ref|ZP_07637729.1| translation initiation factor IF-3 [Mobiluncus mulieris FB024-16]
gi|269933684|gb|EEZ90268.1| translation initiation factor IF-3 [Mobiluncus mulieris 28-1]
gi|307613699|gb|EFN92943.1| translation initiation factor IF-3 [Mobiluncus mulieris FB024-16]
Length = 362
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I + VR++ G + VV+ +AL LA++ DLVEV +A+PPVCK+MDF K
Sbjct: 20 RVNDQIRVREVRVIGQNGEQIGVVAIGKALILAQNAGLDLVEVAPEAHPPVCKLMDFGKY 79
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K +D + ++ L KE+R KI+Q D ++K ++R +D G +VK M
Sbjct: 80 KYEAAQKARDAKRNQASTQL-----KEIRLGLKIDQHDYEVKLGHMRRFLDGGDKVKVMI 134
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G+++ ++G ++RL + I + +VES P + + ++ VK
Sbjct: 135 RFRGREQSRPEMGVKLMNRLAEDIAEDGIVESTPRQDGRNMTMVLAPVK 183
>gi|227875288|ref|ZP_03993430.1| translation initiation factor IF-3 [Mobiluncus mulieris ATCC 35243]
gi|227844193|gb|EEJ54360.1| translation initiation factor IF-3 [Mobiluncus mulieris ATCC 35243]
Length = 356
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I + VR++ G + VV+ +AL LA++ DLVEV +A+PPVCK+MDF K
Sbjct: 14 RVNDQIRVREVRVIGQNGEQIGVVAIGKALILAQNAGLDLVEVAPEAHPPVCKLMDFGKY 73
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K +D + ++ L KE+R KI+Q D ++K ++R +D G +VK M
Sbjct: 74 KYEAAQKARDAKRNQASTQL-----KEIRLGLKIDQHDYEVKLGHMRRFLDGGDKVKVMI 128
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G+++ ++G ++RL + I + +VES P + + ++ VK
Sbjct: 129 RFRGREQSRPEMGVKLMNRLAEDIAEDGIVESTPRQDGRNMTMVLAPVK 177
>gi|159043698|ref|YP_001532492.1| translation initiation factor IF-3 [Dinoroseobacter shibae DFL 12]
gi|157911458|gb|ABV92891.1| translation initiation factor IF-3 [Dinoroseobacter shibae DFL 12]
Length = 202
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+N +I A +RL+ +G VV+ EA+ +A DLVE+ ANPPVCKIMDF
Sbjct: 35 TGPRVNGRIRAPEIRLIDADGENAGVVTPREAMRMAEEAGLDLVEISPNANPPVCKIMDF 94
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + K + I D KEV+F + D Q+K V + ++ G +VK
Sbjct: 95 GKFKYEQQKRESEARKKQKTI-----DVKEVKFRPNTDTHDYQVKMRNVFKFLEGGDKVK 149
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + ++I VE+ P +E +Q +I
Sbjct: 150 VTLRFRGREMAHQNLGRELLERVAEDTKEIGKVENMPKMEGRQMVMMI 197
>gi|256832335|ref|YP_003161062.1| translation initiation factor IF-3 [Jonesia denitrificans DSM
20603]
gi|256685866|gb|ACV08759.1| translation initiation factor IF-3 [Jonesia denitrificans DSM
20603]
Length = 233
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 13/187 (6%)
Query: 70 QQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV-VSRHE-ALALARSLQCDLVEVDRKAN 127
+ ++ E + PR+ND+I VRLV G +V V R E AL LA+ DLVEV +
Sbjct: 11 RHQRKEHHINEPRINDRIRVPEVRLVGPGGEQVGVVRLEVALNLAQEADLDLVEVAPDSR 70
Query: 128 PPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
PPVCK+MD+ K KY+ +K ++ + +++ L KE+RF KI+ D K V+R
Sbjct: 71 PPVCKLMDYGKFKYESAMKAREARRNQANTVL-----KEIRFRLKIDDHDYGTKKGHVER 125
Query: 188 LMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHV 246
+ G +VK M + G+++ ++G L RL D + ++ VES P + + ++
Sbjct: 126 FLSAGDKVKVMIMFRGREQSRPEMGIRLLQRLADDVAELGYVESSPKQDGRNMIMVL--- 182
Query: 247 KFGPSKK 253
GP+KK
Sbjct: 183 --GPTKK 187
>gi|269956116|ref|YP_003325905.1| translation initiation factor IF-3 [Xylanimonas cellulosilytica DSM
15894]
gi|269304797|gb|ACZ30347.1| translation initiation factor IF-3 [Xylanimonas cellulosilytica DSM
15894]
Length = 351
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 98/178 (55%), Gaps = 13/178 (7%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
S PR+ND+I VRL+ G +V V+ AL LA+ DLVEV A PPV K+MD+
Sbjct: 8 SEPRINDRIRVSEVRLIGPGGEQVGVVATAVALKLAQDADLDLVEVAPDARPPVAKLMDY 67
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ ++K ++ + +++ L KE+RF KI+ D + K V R ++ G +VK
Sbjct: 68 GKFKYESDMKAREARRNQANTVL-----KEIRFRLKIDAHDYETKKGHVVRFLEGGDKVK 122
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
M + G+++ ++G L+RL + + D+ VES P + + ++ GP KK
Sbjct: 123 VMIMFRGREQSRPEMGVRLLTRLAEEVADLGSVESMPKQDGRNMTMVL-----GPVKK 175
>gi|289704523|ref|ZP_06500958.1| translation initiation factor IF-3 [Micrococcus luteus SK58]
gi|289558781|gb|EFD52037.1| translation initiation factor IF-3 [Micrococcus luteus SK58]
Length = 408
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
S PR+N++I VRLV G +V V +AL LA DLVEV A PPVCK+MDF
Sbjct: 80 SDPRINERIRVPEVRLVGPNGEQVGIVRVEDALRLAAEADLDLVEVAPTAKPPVCKLMDF 139
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ +K ++ K + + L KEVRF KI++ D + K K+ + +G +VK
Sbjct: 140 GKYKYEAAVKARESRKNQVNTVL-----KEVRFRLKIDKHDYETKTGHAKKFLSQGDKVK 194
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++++ +LG L + + + ++ VES P + + ++
Sbjct: 195 AIIQFRGREQQRPELGIKLLQQFAEDVAELGTVESQPRQDGRNMVMVV 242
>gi|239917950|ref|YP_002957508.1| translation initiation factor 3 [Micrococcus luteus NCTC 2665]
gi|239839157|gb|ACS30954.1| bacterial translation initiation factor 3 (bIF-3) [Micrococcus
luteus NCTC 2665]
Length = 401
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
S PR+N++I VRLV G +V V +AL LA DLVEV A PPVCK+MDF
Sbjct: 51 SDPRINERIRVPEVRLVGPNGEQVGIVRVEDALRLAAEADLDLVEVAPTAKPPVCKLMDF 110
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ +K ++ K + + L KEVRF KI++ D + K K+ + +G +VK
Sbjct: 111 GKYKYEAAVKARESRKNQVNTVL-----KEVRFRLKIDKHDYETKTGHAKKFLSQGDKVK 165
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++++ +LG L + + + ++ VES P + + ++
Sbjct: 166 AIIQFRGREQQRPELGIKLLQQFAEDVAELGAVESQPRQDGRNMVMVV 213
>gi|257064217|ref|YP_003143889.1| translation initiation factor 3 [Slackia heliotrinireducens DSM
20476]
gi|256791870|gb|ACV22540.1| bacterial translation initiation factor 3 (bIF-3) [Slackia
heliotrinireducens DSM 20476]
Length = 197
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PRLND+IN + RL+ +G + + EAL +A + Q DLVE+ ANPPVC+IMD+ K
Sbjct: 19 PRLNDEINVRECRLIGYDGTQMGIYDVREALRIAENQQLDLVEIAPNANPPVCRIMDYGK 78
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY + +K K K ++ K + KE++F KI+ D K + R + G +VK
Sbjct: 79 FKYDQAIKAKQARKKQT-----KVEIKEMKFRPKIDIGDYTTKKKHIIRFLQDGAKVKIT 133
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ D G L RL D ++D++VVE+ P +E + + +I
Sbjct: 134 IMFRGREMAHPDQGLSILERLADDLKDVAVVENQPKMEGRNMHMLI 179
>gi|85702892|ref|ZP_01033996.1| translation initiation factor [Roseovarius sp. 217]
gi|85671820|gb|EAQ26677.1| translation initiation factor [Roseovarius sp. 217]
Length = 219
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+ND+I +RL+ +G V V+ AL +A DLVE+ A PPVCKIMDF
Sbjct: 52 TGPRINDRIRCDEIRLIGADGENVGVVTPQRALEMAEEAGLDLVEISPSATPPVCKIMDF 111
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + K + I + KE++F + D +K +V + + G +VK
Sbjct: 112 GKYKYEQQKREAEARKKQKVI-----EVKEIKFRPGTDTHDYDVKMRSVVKFLQGGDKVK 166
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ + I+D+ +E+ P +E +Q +I
Sbjct: 167 ITLRFRGREMAHQDLGRQLLERIAEDIKDVGRIENMPKMEGRQMIMVI 214
>gi|317121665|ref|YP_004101668.1| translation initiation factor 3 (bIF-3) [Thermaerobacter
marianensis DSM 12885]
gi|315591645|gb|ADU50941.1| bacterial translation initiation factor 3 (bIF-3) [Thermaerobacter
marianensis DSM 12885]
Length = 196
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR++ EG + + HEAL +A DLVEV +A PPVC+IMD+ K K
Sbjct: 1 MNEQIRVREVRVISPEGEQLGIFPTHEALRMAYERNLDLVEVAPQARPPVCRIMDYGKYK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ ++++ A+ + I D KEV+ +I+Q D ++K +R ++ G +VK +
Sbjct: 61 YEQAKRDRE-ARRRQKIV----DIKEVKMRPRIDQHDFEVKLRNARRFLEDGDKVKATIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ DLG L RL +EDI+ VE P VE
Sbjct: 116 FRGREIVHADLGRQVLERLAKAVEDIATVERRPVVE 151
>gi|294673347|ref|YP_003573963.1| translation initiation factor IF-3 [Prevotella ruminicola 23]
gi|294472015|gb|ADE81404.1| translation initiation factor IF-3 [Prevotella ruminicola 23]
Length = 235
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 20/231 (8%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V DEG V+S +AL AR + DLVE+ ANPPVC+
Sbjct: 2 KNDKLKNQYRINEQIRVREVRIVGDEGSSVMSTRDALNQARDMGVDLVEISPNANPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
++D+ K YQ++ ++K+ KAK K + KE+RF + ++ D Q K + +++G
Sbjct: 62 LIDYSKFLYQQKKRQKE-MKAKQ----VKVEVKEIRFGPQTDEHDYQFKLKHAREFLEEG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+V+ G+ KE+ E L L R + +E++ VE P +E K+ + +
Sbjct: 117 NKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEVGKVEGMPSLEGKKMFLYL----- 168
Query: 249 GPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDPAEFGL 299
P K G KK + D A ++ ++ A E PA GL
Sbjct: 169 APKKAGSAKKSQQARDREAAQLEAKEAAKQQKEAQTEETA---EIPANGGL 216
>gi|399046244|ref|ZP_10738702.1| translation initiation factor IF-3 [Brevibacillus sp. CF112]
gi|433543547|ref|ZP_20499952.1| translation initiation factor IF-3 [Brevibacillus agri BAB-2500]
gi|398055605|gb|EJL47666.1| translation initiation factor IF-3 [Brevibacillus sp. CF112]
gi|432185221|gb|ELK42717.1| translation initiation factor IF-3 [Brevibacillus agri BAB-2500]
Length = 167
Score = 90.9 bits (224), Expect = 1e-15, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + VV EAL +A+ + DLV V A PPVC+IMD+ K K
Sbjct: 3 INEAIRAREVRLIGADGSQLGVVPFREALRIAQEAELDLVNVAPTAKPPVCRIMDYGKFK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ KEK+ K + I L KEVRFS IE+ D Q K V++ ++ ++VKC
Sbjct: 63 YEQAKKEKEARKNQKIIEL-----KEVRFSSNIEEHDFQTKLRNVRKFLEDHHKVKCTIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G G + R+ ED++ E P +E + I+
Sbjct: 118 FRGREITHSEIGLGVMERVAAQCEDLATPERKPKIEGRSMIMIL 161
>gi|149202824|ref|ZP_01879796.1| translation initiation factor IF-3 [Roseovarius sp. TM1035]
gi|149144106|gb|EDM32140.1| translation initiation factor IF-3 [Roseovarius sp. TM1035]
Length = 209
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+ND+I +RL+ +G V ++ AL +A DLVE+ A PPVCKIMDF
Sbjct: 42 TGPRINDRIRCDEIRLIGADGENVGLITPQRALEMAEEAGLDLVEISPSATPPVCKIMDF 101
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KE++F + D +K +V + + G +VK
Sbjct: 102 GKYKYEQQKREAE-ARKKQHII----EIKEIKFRPGTDTHDYDVKMRSVVKFLQGGDKVK 156
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ D I+++ VE+ P +E +Q +I
Sbjct: 157 ITLRFRGREMAHQDLGRQLLERIADDIKEVGRVENMPKMEGRQMIMVI 204
>gi|338737217|ref|YP_004674179.1| translation initiation factor IF-3 [Hyphomicrobium sp. MC1]
gi|337757780|emb|CCB63603.1| translation initiation factor IF-3 [Hyphomicrobium sp. MC1]
Length = 176
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKI 133
+E SGPR+ND+I A+ VRL+ + G V +S+ +ALA A DLVE+ A PPVCKI
Sbjct: 8 RENSGPRINDQIRAREVRLIDENGQNVGVISKFDALARAEDAGLDLVEISPDAEPPVCKI 67
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+DF K K+Q++ K + K + + L KE++ I+ D +K +KR + G
Sbjct: 68 LDFGKFKFQEQKKAAEARKNQKIVEL-----KEIKMRPGIDDHDYDVKMRAIKRFFEDGD 122
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ LG L R+ E IS VES P E +Q ++
Sbjct: 123 KVKITLRFRGREMAHSQLGMAVLQRVKADTEAISKVESEPRFEGRQMVMVL 173
>gi|315655516|ref|ZP_07908415.1| translation initiation factor IF3 [Mobiluncus curtisii ATCC 51333]
gi|315490171|gb|EFU79797.1| translation initiation factor IF3 [Mobiluncus curtisii ATCC 51333]
Length = 367
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G + VV+ +A+ALA DLVEV A+PPVCK+MD+ K
Sbjct: 19 RINDQIRVPEVRLVGVNGEQIGVVATMKAVALADDAGLDLVEVAPDAHPPVCKLMDYGKY 78
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K +D+ + ++ L KE+R KI+ D ++K + R ++ G +VK M
Sbjct: 79 KYEAAQKARDQRRNQASTQL-----KEIRLGLKIDSHDYEVKKGHILRFLNGGDKVKIMI 133
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G+++ ++G L RL + I D VVES P + + +I GP KK
Sbjct: 134 KFRGREQSRPEMGIKLLERLAEDIADDGVVESAPRQDGRSMTMVI-----GPVKK 183
>gi|422325401|ref|ZP_16406437.1| hypothetical protein HMPREF0737_01547 [Rothia mucilaginosa M508]
gi|353343405|gb|EHB87723.1| hypothetical protein HMPREF0737_01547 [Rothia mucilaginosa M508]
Length = 284
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 71 QKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANP 128
+ E S PR+ND+I VRLV G +V V +AL LA + DLVEV A P
Sbjct: 63 HRAQELVISEPRINDRIRVPEVRLVGPGGEQVGVVPLKDALRLAEDAELDLVEVAPNAKP 122
Query: 129 PVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRL 188
PVCK+MD+ K KY+ +K ++ K +++ L KE+RF KI+ D + K +R
Sbjct: 123 PVCKLMDYGKYKYEAAIKARESRKKQANAVL-----KEIRFRLKIDTHDYETKVGHARRF 177
Query: 189 MDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G +VK M G++++ ++G L RL + ++S VES P
Sbjct: 178 LSGGDKVKAMIQFRGREQQRPEMGVRLLERLAAELAEVSTVESRP 222
>gi|372280789|ref|ZP_09516825.1| translation initiation factor IF-3 [Oceanicola sp. S124]
Length = 194
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+ND+I A +RL+ EG V V+ ALA+A DLVE+ A PPVCKIMDF
Sbjct: 27 TGPRVNDRIRAPEIRLIGAEGENVGVVTPSRALAMAEEAGLDLVEISPNATPPVCKIMDF 86
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KEV+F + D +K V + ++ G +VK
Sbjct: 87 GKFKYEQQKRESE-ARKKQKII----EVKEVKFRPGTDVHDYDVKMRNVIKFLEHGDKVK 141
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + +++I VE+ P +E +Q +I
Sbjct: 142 VTLRFRGREMAHQNLGRELLERVAEDVKEIGKVENMPKMEGRQMVMMI 189
>gi|283458461|ref|YP_003363087.1| translation initiation factor 3 [Rothia mucilaginosa DY-18]
gi|283134502|dbj|BAI65267.1| translation initiation factor 3 [Rothia mucilaginosa DY-18]
Length = 258
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 8/166 (4%)
Query: 71 QKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANP 128
+ E S PR+ND+I VRLV G +V V +AL LA + DLVEV A P
Sbjct: 37 HRAQELVISEPRINDRIRVPEVRLVGPGGEQVGVVPLKDALRLAEDAELDLVEVAPNAKP 96
Query: 129 PVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRL 188
PVCK+MD+ K KY+ +K ++ K +++ L KE+RF KI+ D + K +R
Sbjct: 97 PVCKLMDYGKYKYEAAIKARESRKKQANAVL-----KEIRFRLKIDTHDYETKVGHARRF 151
Query: 189 MDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPH 233
+ G +VK M G++++ ++G L RL + ++S VES P
Sbjct: 152 LSGGDKVKAMIQFRGREQQRPEMGVRLLERLAAELAEVSTVESRPR 197
>gi|255326345|ref|ZP_05367429.1| translation initiation factor IF-3 [Rothia mucilaginosa ATCC 25296]
gi|255296562|gb|EET75895.1| translation initiation factor IF-3 [Rothia mucilaginosa ATCC 25296]
Length = 233
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 8/159 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
S PR+ND+I VRLV G +V V +AL LA + DLVEV A PPVCK+MD
Sbjct: 19 ISEPRINDRIRVPEVRLVGPGGEQVGVVPLKDALRLAEDAELDLVEVAPNAKPPVCKLMD 78
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K +++ L KE+RF KI+ D + K +R + G +V
Sbjct: 79 YGKYKYEAAIKARESRKKQANAVL-----KEIRFRLKIDTHDYETKVGHARRFLSGGDKV 133
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPH 233
K M G++++ ++G L RL + ++S VES P
Sbjct: 134 KAMIQFRGREQQRPEMGVRLLERLAAELAEVSTVESRPR 172
>gi|406671292|ref|ZP_11078531.1| translation initiation factor IF-3 [Facklamia hominis CCUG 36813]
gi|405580542|gb|EKB54601.1| translation initiation factor IF-3 [Facklamia hominis CCUG 36813]
Length = 168
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ +R++ D G ++ S +AL +A S + DLV V +A PPV +IMD+ K +
Sbjct: 2 INDQIRAKELRVIGDNGDQIGIKSLKDALTIAESFELDLVLVSPQAKPPVARIMDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK++ K K + KEVRFS I+ D Q K + ++KG +VK
Sbjct: 62 YEQQKKEKEQRK-----NTKTVNVKEVRFSPSIDDHDYQTKLRQSIKFLEKGDKVKASIR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +DLG L I+ +DI+VVES P +E + Y I+
Sbjct: 117 FRGRSITHKDLGRDVLEDFIEDTKDIAVVESKPKMEGRSMYTIV 160
>gi|365866482|ref|ZP_09406096.1| translation initiation factor IF-3 [Streptomyces sp. W007]
gi|364004097|gb|EHM25223.1| translation initiation factor IF-3 [Streptomyces sp. W007]
Length = 305
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 106/213 (49%), Gaps = 22/213 (10%)
Query: 53 PNDFC-------NNVRFFAAPVQAQQ--KKDEKETSGPRLNDKINAQFVRLVLDEGHKV- 102
P FC + +R +AA QA + ++ PR+ND+I VRLV G +V
Sbjct: 54 PGHFCASGSVGLDVIRRYAAVRQAVAWCYRGGSISAEPRINDRIRVPEVRLVGPSGEQVG 113
Query: 103 -VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ K ++ +
Sbjct: 114 IVPLAKALELAQEYDLDLVEVAATARPPVCKLMDYGKFKYESAMKAREARKNQAHTVI-- 171
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE++ KI+ D K V R + +G +VK + G+++ +LG L RL
Sbjct: 172 ---KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGFRLLQRLAS 228
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ED+ +ES P + + ++ GP KK
Sbjct: 229 DVEDLGFIESNPKQDGRNMIMVL-----GPHKK 256
>gi|294508833|ref|YP_003572892.1| translation initiation factor IF-3 [Salinibacter ruber M8]
gi|294345162|emb|CBH25940.1| Translation initiation factor IF-3 [Salinibacter ruber M8]
Length = 200
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
Query: 62 FFAAPVQAQQKKDE---KETSGPRLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQC 117
FF P + QK + + R+N +I A VR+V +G H VV EAL AR +
Sbjct: 13 FFTIPEFSSQKTTDPAIADVDKLRVNQEIRADEVRVVEPDGDHDVVPTGEALDRARDHEL 72
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVEV A+PPVCKI+D+ K +Y+K+ KE+ R + KS K + KE+RF + E+ D
Sbjct: 73 DLVEVAPDADPPVCKILDYGKYRYEKQ-KEEQRRRKKS----KSMEMKELRFRPRTEEHD 127
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVER 236
K D + ++ G +VK G+ +D G L R+I+ +++I+ ++ P +E
Sbjct: 128 FNFKVDHAREFLEDGNKVKAYVQFKGRDIVYKDQGMDLLRRMIEELQEIARIDQQPEMEG 187
Query: 237 KQAYAII 243
++ I+
Sbjct: 188 RRMVMIL 194
>gi|298346970|ref|YP_003719657.1| translation initiation factor IF-3 [Mobiluncus curtisii ATCC 43063]
gi|298237031|gb|ADI68163.1| translation initiation factor IF-3 [Mobiluncus curtisii ATCC 43063]
Length = 367
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G + VV+ +A++LA DLVEV A+PPVCK+MD+ K
Sbjct: 19 RINDQIRVPEVRLVGVNGEQIGVVATMKAVSLADDAGLDLVEVAPDAHPPVCKLMDYGKY 78
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K +D+ + ++ L KE+R KI+ D ++K + R ++ G +VK M
Sbjct: 79 KYEAAQKARDQRRNQASTQL-----KEIRLGLKIDSHDYEVKKGHILRFLNGGDKVKIMI 133
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G+++ ++G L RL + I D VVES P + + +I GP KK
Sbjct: 134 KFRGREQSRPEMGIKLLERLAEDIADDGVVESAPRQDGRSMTMVI-----GPVKK 183
>gi|304389319|ref|ZP_07371284.1| translation initiation factor IF3 [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315656577|ref|ZP_07909464.1| translation initiation factor IF3 [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|304327437|gb|EFL94670.1| translation initiation factor IF3 [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315492532|gb|EFU82136.1| translation initiation factor IF3 [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 367
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G + VV+ +A++LA DLVEV A+PPVCK+MD+ K
Sbjct: 19 RINDQIRVPEVRLVGVNGEQIGVVATMKAVSLADDAGLDLVEVAPDAHPPVCKLMDYGKY 78
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K +D+ + ++ L KE+R KI+ D ++K + R ++ G +VK M
Sbjct: 79 KYEAAQKARDQRRNQASTQL-----KEIRLGLKIDSHDYEVKKGHILRFLNGGDKVKIMI 133
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G+++ ++G L RL + I D VVES P + + +I GP KK
Sbjct: 134 KFRGREQSRPEMGIKLLERLAEDIADDGVVESAPRQDGRSMTMVI-----GPVKK 183
>gi|83309440|ref|YP_419704.1| translation initiation factor 3 [Magnetospirillum magneticum AMB-1]
gi|82944281|dbj|BAE49145.1| Translation initiation factor 3 [Magnetospirillum magneticum AMB-1]
gi|452963667|gb|EME68728.1| translation initiation factor IF-3 [Magnetospirillum sp. SO-1]
Length = 173
Score = 89.4 bits (220), Expect = 5e-15, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+N +I+ + +RLV +G VV+ E L +A DLVEV A+PPVCKI+
Sbjct: 6 KNDGPRVNREIDVRSIRLVGADGEMIGVVTLREGLVMAEEAGLDLVEVSPNADPPVCKIL 65
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
DF K KY+ + K+K+ A+ K + + KEV+ I+ D +K ++++ +++G +
Sbjct: 66 DFGKFKYEDQ-KKKNAARKKQKVI----EVKEVKLRPNIDDHDYDVKMRSMRKFLEEGDK 120
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ D +ED+ VE P +E +Q +I
Sbjct: 121 VKVTLRFRGRELAHQDLGMKVLERVRDDLEDLGKVEQIPKMEGRQMVMVI 170
>gi|403715950|ref|ZP_10941588.1| translation initiation factor IF-3 [Kineosphaera limosa NBRC
100340]
gi|403210253|dbj|GAB96271.1| translation initiation factor IF-3 [Kineosphaera limosa NBRC
100340]
Length = 215
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCK 132
E + S PR+ND+I VRLV G +V V EAL LA + DLVEV ANPPV K
Sbjct: 3 EHDISDPRINDRIRVPQVRLVGPNGEQVGIVKIEEALRLAGEVDLDLVEVAPMANPPVAK 62
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
+MDF K KY+ LK ++ K + + + KE++ KI+ D + K V R ++ G
Sbjct: 63 LMDFGKYKYEAALKAREARKNQVNTVI-----KEIKLRPKIDPHDYETKKGHVVRFLNAG 117
Query: 193 YRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPS 251
+VK + G+++ +LG L RL + ++ VES P + + ++ GP+
Sbjct: 118 DKVKVTIMFRGREQSRPELGYRLLQRLAQDVTELGFVESAPKQDGRNMIMVL-----GPT 172
Query: 252 KK 253
KK
Sbjct: 173 KK 174
>gi|284048034|ref|YP_003398373.1| translation initiation factor IF-3 [Acidaminococcus fermentans DSM
20731]
gi|283952255|gb|ADB47058.1| translation initiation factor IF-3 [Acidaminococcus fermentans DSM
20731]
Length = 177
Score = 89.0 bits (219), Expect = 5e-15, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ I A+ VR+ +G + ++S H+AL LA DLVE+ KA PPVC+IMD+ K
Sbjct: 12 RINEAIRAREVRVNSADGEQFGIMSLHDALHLAEEKHLDLVEIAPKAKPPVCRIMDYGKY 71
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+++ +EK+ K + I D KEV+ +IE D ++K R + G +VK
Sbjct: 72 LYEQQKREKEARKRQRTI-----DVKEVKLRIRIEDHDFEVKTKNAIRFLQGGDKVKVTI 126
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R+ D +++I+ VE P +E + I+
Sbjct: 127 MFRGREMTHPELGEQLLNRMADQLQEIATVERKPKLEGRNMIMIV 171
>gi|429739534|ref|ZP_19273288.1| translation initiation factor IF-3 [Prevotella saccharolytica
F0055]
gi|429156923|gb|EKX99542.1| translation initiation factor IF-3 [Prevotella saccharolytica
F0055]
Length = 227
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 17/190 (8%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I A+ VR+V D G VVS +AL +ARS DLVE+ A PPVC+
Sbjct: 2 KNDKIKNQYRVNEQIRAKEVRVVNDGGSTVVSTRQALDMARSQGVDLVEISPNAEPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
++D+ K YQ++ K KAK K + KE+RF + ++ D Q K K +D G
Sbjct: 62 LIDYSKFLYQQK-KHAKEMKAKQ----VKVEVKEIRFGPQTDEHDYQFKLKHAKEFLDNG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+V+ G+ KE+ E L L R + +E+ VE P +E K+ + +
Sbjct: 117 NKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPALEGKKMFLYL----- 168
Query: 249 GPSKKGGLKK 258
P K G +KK
Sbjct: 169 APKKAGAVKK 178
>gi|114566617|ref|YP_753771.1| hypothetical protein Swol_1090 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337552|gb|ABI68400.1| bacterial translation initiation factor 3 (bIF-3) [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 179
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
RLN++I + VRL+ + G + +VS EA+ LA+ + DLVEV A PPVC++MD+ K
Sbjct: 2 RLNEEIRVKEVRLISESGEQLGIVSIREAMDLAQEKELDLVEVAPSAKPPVCRLMDYGKY 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
++++ +EK+ K + I++ KEV+ IE+ D Q+KA ++ + G +VK
Sbjct: 62 RFEQSKREKEARKKQRIISI-----KEVKMRPNIEEHDFQVKAKNARKFLSGGDKVKLTI 116
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ D+G LS +L + + DIS +E P VE + I+
Sbjct: 117 MFRGREITHPDIGEKLSLKLTEQLSDISTIEKMPKVEGRNMVTIL 161
>gi|253577273|ref|ZP_04854592.1| translation initiation factor IF-3 [Paenibacillus sp. oral taxon
786 str. D14]
gi|251843387|gb|EES71416.1| translation initiation factor IF-3 [Paenibacillus sp. oral taxon
786 str. D14]
Length = 164
Score = 88.6 bits (218), Expect = 7e-15, Method: Composition-based stats.
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG ++ + EAL +A L DLV V A PPVC+IMD+ K +
Sbjct: 2 INEEIRAKEVRLVGAEGEQIGIKPLREALQMAMDLNLDLVNVAPTAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q K V + + G +VKC
Sbjct: 62 YEQQKKEKEARKNQKIV-----DIKEVWFRANIEEHDFQTKLRNVIKFLKDGDKVKCSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ D+G L R+ D + +IS VE P +E + I+
Sbjct: 117 FRGREITHADIGKKILDRVKDEVAEISNVERVPKLEGRSMIMIL 160
>gi|311113266|ref|YP_003984488.1| translation initiation factor IF3 [Rothia dentocariosa ATCC 17931]
gi|310944760|gb|ADP41054.1| translation initiation factor IF3 [Rothia dentocariosa ATCC 17931]
Length = 233
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
S PR+ND+I VRLV G +V V +AL LA + DLVEV A PPVCK+MD
Sbjct: 19 ISEPRINDRIRVPEVRLVGPGGEQVGVVPLKDALRLAEDAELDLVEVAPNAKPPVCKLMD 78
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K + + L KE+RF KI+ D + K +R + G +V
Sbjct: 79 YGKYKYEAAVKARESRKKQVNAVL-----KEIRFRLKIDTHDYETKVGHARRFLTGGDKV 133
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K M G++++ ++G L RL + + ++S +ES P
Sbjct: 134 KAMIQFRGREQQRPEMGVRLLERLAEELAEVSTIESRP 171
>gi|354580056|ref|ZP_08998961.1| translation initiation factor IF-3 [Paenibacillus lactis 154]
gi|353202487|gb|EHB67936.1| translation initiation factor IF-3 [Paenibacillus lactis 154]
Length = 164
Score = 88.6 bits (218), Expect = 7e-15, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRLV EG ++ + EAL +A L DLV V +A PPVC+IMD+ K +
Sbjct: 2 INDEIRAKEVRLVGPEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q K V + + G +VKC
Sbjct: 62 YEQQKKEKEARKNQKIV-----DIKEVWFRANIEEHDFQTKLRNVVKFLKDGDKVKCSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L R+ + D+ VVE P +E + I+
Sbjct: 117 FRGREITHANIGQKILERVKTEVADLCVVERQPKLEGRSMIMIL 160
>gi|333978106|ref|YP_004516051.1| Translation initiation factor IF-3 [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821587|gb|AEG14250.1| Translation initiation factor IF-3 [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 231
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N++I A+ VR+V G++ ++ EAL LA Q DLVE+ +A PPVC++MD
Sbjct: 36 TKNFRVNEEIRAREVRVVDPSGNQLGIMPVREALRLAEERQLDLVEIAPQAKPPVCRLMD 95
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY++ +EK+ K + I + KEV+ IE+ D Q+KA R + +G +V
Sbjct: 96 YGKYKYEQSKREKEAKKRQRIINI-----KEVKLRPSIEEHDFQVKARNAARFLKEGDKV 150
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
K + G++ LG L RL + ++D+S++E P +E K I+
Sbjct: 151 KATIMFRGREIMHTQLGHQLLLRLAEQVKDLSIIERQPKLEGKNMVMIL 199
>gi|226311194|ref|YP_002771088.1| translation initiation factor IF-3 [Brevibacillus brevis NBRC
100599]
gi|226094142|dbj|BAH42584.1| translation initiation factor IF-3 [Brevibacillus brevis NBRC
100599]
Length = 173
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + VV EAL +A+ + DLV V A PPVC+IMD+ K K
Sbjct: 8 INEAIRAREVRLIGADGSQLGVVPFREALRIAQEAELDLVNVAPTAKPPVCRIMDYGKFK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ KEK+ K + I L KEVRFS IE+ D Q K V++ ++ ++VKC
Sbjct: 68 YEQAKKEKEARKNQKIIEL-----KEVRFSSNIEEHDFQTKLRNVRKFLEDQHKVKCTIR 122
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G G + R+ ED++ E P +E + I+
Sbjct: 123 FRGREITHSEIGLGVMERVAAQCEDLAAPERKPKIEGRSMIMIL 166
>gi|300744014|ref|ZP_07073034.1| translation initiation factor IF-3 [Rothia dentocariosa M567]
gi|300380375|gb|EFJ76938.1| translation initiation factor IF-3 [Rothia dentocariosa M567]
Length = 246
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 8/166 (4%)
Query: 71 QKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANP 128
+ E S PR+ND+I VRLV G +V V +AL LA + DLVEV A P
Sbjct: 25 HRAQELLISEPRINDRIRVPEVRLVGPGGEQVGVVPLKDALRLAEDAELDLVEVAPNAKP 84
Query: 129 PVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRL 188
PVCK+MD+ K KY+ +K ++ K + + L KE+RF KI+ D + K +R
Sbjct: 85 PVCKLMDYGKYKYEAAVKARESRKKQVNAVL-----KEIRFRLKIDTHDYETKVGHARRF 139
Query: 189 MDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPH 233
+ G +VK M G++++ ++G L RL + + ++S +ES P
Sbjct: 140 LTGGDKVKAMIQFRGREQQRPEMGVRLLERLAEELAEVSTIESRPR 185
>gi|94967744|ref|YP_589792.1| translation initiation factor 3 [Candidatus Koribacter versatilis
Ellin345]
gi|94549794|gb|ABF39718.1| bacterial translation initiation factor 3 (bIF-3) [Candidatus
Koribacter versatilis Ellin345]
Length = 249
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N++I A+ +R++ DEG++ ++ EAL LA+ DLVEV A PPVC+IMDF K
Sbjct: 43 RTNERIRARELRVIDDEGNQLGILPPFEALKLAKEKNLDLVEVSPTAQPPVCRIMDFGKF 102
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+ E +E+ K + IT+ KEV+F +++ D Q K + V R + +G +VK
Sbjct: 103 MYETEKRERAAKKHQHVITV-----KEVKFRINVDEHDYQTKKNHVLRFLGEGDKVKATI 157
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L R+I I D +VE P E + I+
Sbjct: 158 FFRGREMTRQGLGREILERVIKDIGDKGIVEFRPRQEGNTLHLIL 202
>gi|410583614|ref|ZP_11320719.1| bacterial translation initiation factor 3 (bIF-3) [Thermaerobacter
subterraneus DSM 13965]
gi|410504476|gb|EKP93986.1| bacterial translation initiation factor 3 (bIF-3) [Thermaerobacter
subterraneus DSM 13965]
Length = 194
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR++ EG + + HEAL +A DLVEV +A PPVC+IMD+ K K
Sbjct: 1 MNEQIRVREVRVISPEGEQLGIFPTHEALRMAYERNMDLVEVAPQARPPVCRIMDYGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ ++++ A+ + I D KEV+ +I+Q D ++K +R ++ G +VK +
Sbjct: 61 YEQAKRDRE-ARKRQKIV----DIKEVKMRPRIDQHDFEVKLRNARRFLEDGDKVKATIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ DLG L RL +EDI+ +E P VE
Sbjct: 116 FRGREIVHADLGRQVLERLARAVEDIATIERRPVVE 151
>gi|345880785|ref|ZP_08832326.1| hypothetical protein HMPREF9431_00990 [Prevotella oulorum F0390]
gi|343922019|gb|EGV32727.1| hypothetical protein HMPREF9431_00990 [Prevotella oulorum F0390]
Length = 231
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 27/226 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I A+ VR+V DEG +VVS +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKLKNQYRVNEQIRAREVRIVGDEGSEVVSTKKALDMARQQGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
++D+ K +K+QKE+K+K K + KE+RF + ++ D K K
Sbjct: 62 LIDYSKFLYQQKKHQKEIKQKQV----------KVEVKEIRFGPQTDEHDYNFKLKHAKE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++ G +V+ G+ KE+ E L L R + +E+ VE P +E K+ + I
Sbjct: 112 FLEDGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEFGKVEQMPRLEGKKMFLFI 168
Query: 244 RHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAI 289
P K G KK + D A +S ++R ++ +
Sbjct: 169 -----APKKSGVAKKSQQKLDREKRDAEAKLASDMQREANLEKTGL 209
>gi|291443486|ref|ZP_06582876.1| translation initiation factor IF-3 [Streptomyces roseosporus NRRL
15998]
gi|291346433|gb|EFE73337.1| translation initiation factor IF-3 [Streptomyces roseosporus NRRL
15998]
Length = 255
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 106/213 (49%), Gaps = 22/213 (10%)
Query: 53 PNDFCNN-------VRFFAAPVQAQQ--KKDEKETSGPRLNDKINAQFVRLVLDEGHKV- 102
P FC + +R +AA QA + ++ PR+ND+I VRLV G +V
Sbjct: 4 PGHFCGSGAVGLDVIRRYAAVRQAVAWCYRGGSISAEPRINDRIRVPEVRLVGPSGEQVG 63
Query: 103 -VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ K ++ +
Sbjct: 64 IVPLAKALELAQEYDLDLVEVAATARPPVCKLMDYGKFKYESAMKAREARKNQAHTVI-- 121
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE++ KI+ D K V R + +G +VK + G+++ +LG L RL
Sbjct: 122 ---KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGFRLLQRLAS 178
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ED+ +ES P + + ++ GP KK
Sbjct: 179 DVEDLGFIESNPKQDGRNMIMVL-----GPHKK 206
>gi|379007088|ref|YP_005256539.1| translation initiation factor 3 (bIF-3) [Sulfobacillus acidophilus
DSM 10332]
gi|361053350|gb|AEW04867.1| bacterial translation initiation factor 3 (bIF-3) [Sulfobacillus
acidophilus DSM 10332]
Length = 170
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I + VR+V ++G + V+S +AL LA + DLVEV A PPVC++MD+ K
Sbjct: 5 RINDEIRVREVRVVGEDGEQLGVMSIRDALTLAAERRLDLVEVSPTARPPVCRLMDYGKF 64
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ +E++ K + + + KE++ IE D ++K + +R + +G +VKC
Sbjct: 65 KYEQAKRERESRKKQKVVNI-----KELKMRPAIEDHDFEVKVKSARRFLAEGDKVKCTM 119
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ L L +L D + D+ +VE P VE + I+
Sbjct: 120 VFRGREIVHASLAQETLKKLADAVADVGIVERVPKVEGRAMIMIL 164
>gi|254488522|ref|ZP_05101727.1| translation initiation factor IF-3 [Roseobacter sp. GAI101]
gi|214045391|gb|EEB86029.1| translation initiation factor IF-3 [Roseobacter sp. GAI101]
Length = 228
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 9/189 (4%)
Query: 58 NNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSL 115
NN R F + +++T GPR+N+ I + +RL+ +G V V+ A+ +A
Sbjct: 40 NNQRTFIIARRPHNAPPQRDT-GPRINENIRSNEIRLIGADGENVGVVTPGRAMEMAEDA 98
Query: 116 QCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQ 175
DLVE+ ANPPVCKIMDF K KY+ + +E + A+ K I + KEV+F +
Sbjct: 99 GLDLVEISPNANPPVCKIMDFGKFKYETQKREAE-ARKKQKII----EIKEVKFRPNTDT 153
Query: 176 KDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHV 234
D Q+K V + +D G +VK G++ ++LG L R+ + +++ VE+ P +
Sbjct: 154 NDYQVKMRNVFKFLDNGDKVKITLRFRGREMAHQNLGRQLLERVAEDTKEVGRVENFPKM 213
Query: 235 ERKQAYAII 243
E +Q +I
Sbjct: 214 EGRQMVMLI 222
>gi|261408924|ref|YP_003245165.1| translation initiation factor IF-3 [Paenibacillus sp. Y412MC10]
gi|329922246|ref|ZP_08277948.1| translation initiation factor IF-3 [Paenibacillus sp. HGF5]
gi|261285387|gb|ACX67358.1| translation initiation factor IF-3 [Paenibacillus sp. Y412MC10]
gi|328942283|gb|EGG38553.1| translation initiation factor IF-3 [Paenibacillus sp. HGF5]
Length = 164
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRLV EG ++ + EAL +A L DLV V +A PPVC+IMD+ K +
Sbjct: 2 INDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q K V + + G +VKC
Sbjct: 62 YEQQKKEKEARKNQKIV-----DIKEVWFRANIEEHDYQTKLRNVVKFLKDGDKVKCSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L R+ + D+ V+E P +E + I+
Sbjct: 117 FRGREITHANIGQKILERVKTEVADLCVIERQPKLEGRSMIMIL 160
>gi|315649038|ref|ZP_07902132.1| translation initiation factor IF-3 [Paenibacillus vortex V453]
gi|315275719|gb|EFU39073.1| translation initiation factor IF-3 [Paenibacillus vortex V453]
Length = 164
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRLV EG ++ + EAL +A L DLV V +A PPVC+IMD+ K +
Sbjct: 2 INDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q K V + + +G +VKC
Sbjct: 62 YEQQKKEKEARKNQKIV-----DIKEVWFRANIEEHDYQTKLRNVVKFLKEGDKVKCSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L R+ + D+ V+E P +E + I+
Sbjct: 117 FRGREITHANIGQKILERVKVEVADLCVIERQPKLEGRSMIMIL 160
>gi|312898389|ref|ZP_07757779.1| translation initiation factor IF-3 [Megasphaera micronuciformis
F0359]
gi|310620308|gb|EFQ03878.1| translation initiation factor IF-3 [Megasphaera micronuciformis
F0359]
Length = 167
Score = 87.8 bits (216), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I A+ VRLV D + V+S A +A DLVE+ A PPVC+IM++ K
Sbjct: 2 RINDQIRAKEVRLVSDTNEQLGVMSLRSARQIAEERHLDLVEIAANAKPPVCRIMNYGKY 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + +TL KEV+ IE D +K +R +D+G +VK
Sbjct: 62 RYEQQKREKEAKKKQKVLTL-----KEVKLRPNIEDHDFYVKMKAAQRFLDEGSKVKVTI 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R D +++++ VE P +E + +I
Sbjct: 117 MFRGREMSHPELGEKLLIRFADELKEVAHVEKAPKIEGRNMTMVI 161
>gi|398818426|ref|ZP_10577017.1| translation initiation factor IF-3 [Brevibacillus sp. BC25]
gi|398027868|gb|EJL21398.1| translation initiation factor IF-3 [Brevibacillus sp. BC25]
Length = 168
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + VV EAL +A+ + DLV V A PPVC+IMD+ K K
Sbjct: 3 INEAIRAREVRLIGADGSQLGVVPFREALRIAQEAELDLVNVAPTAKPPVCRIMDYGKFK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ KEK+ K + I L KEVRFS IE+ D Q K V++ ++ ++VKC
Sbjct: 63 YEQAKKEKEARKNQKIIEL-----KEVRFSSNIEEHDFQTKLRNVRKFLEDQHKVKCSIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G G + R+ ED++ E P +E + I+
Sbjct: 118 FRGREITHSEIGLGVMERVAAQCEDLAAPERRPKIEGRSMIMIL 161
>gi|282881464|ref|ZP_06290138.1| translation initiation factor IF-3 [Prevotella timonensis CRIS
5C-B1]
gi|281304690|gb|EFA96776.1| translation initiation factor IF-3 [Prevotella timonensis CRIS
5C-B1]
Length = 232
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V D+G +V+ +AL LAR DLVE+ A PPVC+
Sbjct: 2 KNDKLSKQYRVNEQIRVREVRVVGDDGSQVMPTRQALDLARQQDVDLVEISPNAQPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
++D+ K YQ +K RAK + K D KE+RF + ++ D Q K + +++G
Sbjct: 62 LIDYSKFLYQ----QKKRAKEMKQKQV-KVDIKEIRFGPQTDEHDYQFKLKHAREFLNEG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
RV+ G+ KE+ E L L R + +ED VE P +E K+ + + +
Sbjct: 117 NRVRAYVFFRGRSILFKEQGEVL---LLRFANDLEDFGKVEQMPKLEGKRMFIYLSPKQV 173
Query: 249 GPSKKGGLKK 258
G KK K+
Sbjct: 174 GVEKKSQQKR 183
>gi|291279884|ref|YP_003496719.1| translation initiation factor IF-3 [Deferribacter desulfuricans
SSM1]
gi|290754586|dbj|BAI80963.1| translation initiation factor IF-3 [Deferribacter desulfuricans
SSM1]
Length = 155
Score = 87.8 bits (216), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 94 LVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRA 151
++L++G + VVS EAL +A DLVEV A PPVCK+MD+ K K++K KE++
Sbjct: 1 MILEDGTQYGVVSIEEALKVAEERGYDLVEVAPNAKPPVCKVMDYGKYKFEKNKKERE-- 58
Query: 152 KAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDL 211
A+ + + D KE++F KI++ D Q+K VKR ++ G +VK + G++ ++
Sbjct: 59 -ARKKLRQHQIDVKEMKFRPKIDEHDYQVKLKHVKRFLEDGDKVKVVMRYRGREMAFQEQ 117
Query: 212 G-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G L+R++ +ED+ VVE P ++ +Q ++
Sbjct: 118 GLEVLNRIVRDLEDLCVVEKHPEMQGRQQVMVL 150
>gi|357402770|ref|YP_004914695.1| translation initiation factor IF-3 [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|337769179|emb|CCB77892.1| Translation initiation factor IF-3 [Streptomyces cattleya NRRL 8057
= DSM 46488]
Length = 224
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 27/209 (12%)
Query: 48 SAVKTPNDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSR 105
+AV+ +CN P+ A+ PR+ND+I VRLV G +V V
Sbjct: 4 AAVRQTAAWCNR----GGPISAE----------PRINDRIRVPEVRLVGPSGEQVGIVPL 49
Query: 106 HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCK 165
+AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ K ++ + K
Sbjct: 50 AKALELAQEYDLDLVEVAATARPPVCKLMDYGKFKYESAMKAREARKNQAHTVI-----K 104
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIED 224
E++ KI+ D K V R + +G +VK + G+++ +LG L RL + ++D
Sbjct: 105 EMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGYRLLQRLAEDVQD 164
Query: 225 ISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ VES P + + ++ GP KK
Sbjct: 165 LGFVESNPKQDGRNMIMVL-----GPHKK 188
>gi|334144511|ref|YP_004537667.1| translation initiation factor IF-3 [Thioalkalimicrobium cyclicum
ALM1]
gi|333965422|gb|AEG32188.1| Translation initiation factor IF-3 [Thioalkalimicrobium cyclicum
ALM1]
Length = 157
Score = 87.4 bits (215), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 13/166 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ EG +V V+ EALA+A + DLVE+ KA PPVC+IMD+ K YQ++ K+ D
Sbjct: 1 MRLIDAEGEQVGVVATPEALAMAEAAGLDLVEIAAKAEPPVCRIMDYGKFIYQQQKKQHD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K + + + KEV+F E+ D Q+K + R +++G RVK G++ +
Sbjct: 61 AKKNQKQVQV-----KEVKFRPGTEEGDYQVKLRNLMRFLEQGDRVKVTIWFRGREITHK 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+LG L R+ +E+++ VE P +E +Q +I P+KKG
Sbjct: 116 ELGMKMLDRIKGDVEEVATVEQEPKMEGRQMQMMI-----APTKKG 156
>gi|344998625|ref|YP_004801479.1| translation initiation factor IF-3 [Streptomyces sp. SirexAA-E]
gi|344314251|gb|AEN08939.1| translation initiation factor IF-3 [Streptomyces sp. SirexAA-E]
Length = 268
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K
Sbjct: 53 PRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMDYGK 112
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +VK
Sbjct: 113 FKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKIT 167
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ G+++ +LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 168 IMFRGREQSRPELGFRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 218
>gi|23016432|ref|ZP_00056188.1| COG0290: Translation initiation factor 3 (IF-3) [Magnetospirillum
magnetotacticum MS-1]
Length = 173
Score = 87.0 bits (214), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+N +I+ + +RLV +G VV+ E L +A DLVEV A+PPVCKI+
Sbjct: 6 KNDGPRVNREIDVRSIRLVGADGEMIGVVTLREGLVMAEEAGLDLVEVSPNADPPVCKIL 65
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
DF K KY+ + K+K+ A+ K + + KE++ I+ D +K ++++ +++G +
Sbjct: 66 DFGKFKYEDQ-KKKNAARKKQKVI----EVKEIKLRPNIDDHDYGVKMRSMRKFLEEGDK 120
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L ++ D +ED+ VE P +E +Q +I
Sbjct: 121 VKVTLRFRGRELAHQDLGMKVLEKVRDDLEDLGKVEQVPKMEGRQMVMVI 170
>gi|334336835|ref|YP_004541987.1| translation initiation factor IF-3 [Isoptericola variabilis 225]
gi|334107203|gb|AEG44093.1| Translation initiation factor IF-3 [Isoptericola variabilis 225]
Length = 294
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
S PR+ND+I VRL+ G +V V+ AL LA+ DLVEV A PPV K+MD
Sbjct: 23 ISEPRINDRIRVPEVRLIGPGGEQVGVVATAVALKLAQDADLDLVEVAPDARPPVAKLMD 82
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ ++K ++ + +++ L KE+RF KI+ D K V+R + G +V
Sbjct: 83 YGKFKYESDMKAREARRNQANTVL-----KEIRFRLKIDPHDYATKRGHVERFLSAGDKV 137
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
K M + G+++ ++G L RL D + ++ VES P + + ++ VK
Sbjct: 138 KVMIMFRGREQSRPEMGVRLLQRLADDVSELGFVESMPKQDGRNMTMVLAPVK 190
>gi|418054823|ref|ZP_12692879.1| Translation initiation factor IF-3 [Hyphomicrobium denitrificans
1NES1]
gi|353212448|gb|EHB77848.1| Translation initiation factor IF-3 [Hyphomicrobium denitrificans
1NES1]
Length = 176
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKI 133
+E GPR+ND+I A+ VRL+ + G V +++ +ALA A + DLVE+ A PPVCKI
Sbjct: 8 RENQGPRINDQIRAREVRLIDENGQNVGVIAKFDALARAEDIGLDLVEISPDAEPPVCKI 67
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+DF K K+Q++ K + K + + L KE++ I+ D +K +KR + G
Sbjct: 68 LDFGKYKFQEQKKAAEARKNQKIVEL-----KEIKMRPGIDDHDYDVKLRAIKRFFEDGD 122
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ LG L R+ + I+ VES P E +Q ++
Sbjct: 123 KVKITLRFRGREMAHSQLGMAVLQRVKGDTDAIAKVESEPRFEGRQMVMVL 173
>gi|126740453|ref|ZP_01756141.1| translation initiation factor IF-3 [Roseobacter sp. SK209-2-6]
gi|126718589|gb|EBA15303.1| translation initiation factor IF-3 [Roseobacter sp. SK209-2-6]
Length = 200
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR N+KI A +RL+ +G V H +A+ LA DLVE+ A PPVCKIMDF
Sbjct: 32 TGPRTNEKIRASEIRLIGADGENVGVVHPAKAMDLANEAGLDLVEISPNAKPPVCKIMDF 91
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KEV+F + D ++K V + ++ G +VK
Sbjct: 92 GKFKYEQQKRESE-ARKKQKII----EVKEVKFRPNTDTHDYEVKMRNVFKFLENGDKVK 146
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + +++I VE+ P +E +Q +I
Sbjct: 147 VTLRFRGREMAHQNLGRELLERVAEDVKEIGKVENMPKMEGRQMIMMI 194
>gi|117923679|ref|YP_864296.1| translation initiation factor 3 [Magnetococcus marinus MC-1]
gi|117607435|gb|ABK42890.1| bacterial translation initiation factor 3 (bIF-3) [Magnetococcus
marinus MC-1]
Length = 182
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 97/165 (58%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ I VRL+ +EG +V VSR++AL A+++ DLVEV +A PPVCKIMD+ K
Sbjct: 15 RINEAIRVPEVRLIDEEGEQVGVVSRNDALYRAQNVGLDLVEVAPEAKPPVCKIMDYTKY 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQK ++E+ K + I D KEV+F + D ++K ++++ ++ G +VKC
Sbjct: 75 KYQKAVRERIARKNQVRI-----DTKEVKFRPGTDTHDYEVKLRSIRKFLEGGNKVKCTM 129
Query: 200 LPVGKKEETEDLGGYLSRLID-LIEDISVVESGPHVERKQAYAII 243
G++ +DLG + + ++ + D+ VE P + +Q ++
Sbjct: 130 RFRGREMAHQDLGLVMLKKVESEVLDLGKVEQEPKLLGRQITMML 174
>gi|383790041|ref|YP_005474615.1| translation initiation factor IF-3 [Spirochaeta africana DSM 8902]
gi|383106575|gb|AFG36908.1| translation initiation factor IF-3 [Spirochaeta africana DSM 8902]
Length = 174
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ I + VRL+ +EG + V+ EAL++A+ DLVEV ANPPVCK+MD+ K
Sbjct: 7 RINEMIRIREVRLIDEEGEQLGVMPTAEALSMAQEKGIDLVEVSPNANPPVCKLMDYGKY 66
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++ + K +D AK K K+ KE+R KIE DLQ K VK+ + +G +VK
Sbjct: 67 KFEMDKKNRD-AKRKQ----KQTQLKEIRMQPKIEPHDLQFKTKHVKQFLAEGNKVKVTI 121
Query: 200 LPVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
G++ TE L R++D++ED V+ P +E
Sbjct: 122 RFRGRELAHTERGVMVLERVLDMLEDGFAVDRKPMME 158
>gi|374709108|ref|ZP_09713542.1| translation initiation factor IF-3 [Sporolactobacillus inulinus
CASD]
Length = 167
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I AQ VRL+ G +V S+ EALA+A+++ DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEGIRAQQVRLIGQNGEQVGIKSKAEALAMAQNVNLDLVLVAPGAKPPVCRIMDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KE++ K + I L KE+R S IE+ D K K+ + KG +VK
Sbjct: 63 FEQQKKEREARKNQKVINL-----KEIRLSPSIEEHDFNTKMRNAKKFLQKGDKVKASVR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +LG L +L + DISV+E+ P +E + + ++
Sbjct: 118 FRGRAITHSNLGRQVLEKLAEECADISVIEARPKMEGRSMFLVL 161
>gi|121601938|ref|YP_989588.1| translation initiation factor IF-3 [Bartonella bacilliformis KC583]
gi|421761386|ref|ZP_16198189.1| translation initiation factor IF-3 [Bartonella bacilliformis INS]
gi|166198949|sp|A1UUD5.1|IF3_BARBK RecName: Full=Translation initiation factor IF-3
gi|120614115|gb|ABM44716.1| translation initiation factor IF-3 [Bartonella bacilliformis KC583]
gi|411173170|gb|EKS43218.1| translation initiation factor IF-3 [Bartonella bacilliformis INS]
Length = 173
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N +I ++L+ DEG +VS EALA+A ++ DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQEIRVPCIQLINDEGQNQGIVSTQEALAMAANIGLDLVEIVPNAEPPVCKIV 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K + R ++ G +
Sbjct: 65 DLGKLKYQNQKKAAETRKKQKII-----EIKEIKLRPNVDVHDYGVKLKAIHRFIEHGNK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + + +I+ +ES P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGVKLLERMKEDVSEIAKIESEPKLENRQMMMVI 169
>gi|261337538|ref|ZP_05965422.1| translation initiation factor IF-3 [Bifidobacterium gallicum DSM
20093]
gi|270277944|gb|EFA23798.1| translation initiation factor IF-3 [Bifidobacterium gallicum DSM
20093]
Length = 225
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 11 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPHAKPPVAKLIDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K+++ + +S + KE+RF KI+ D ++K V+R ++ G +VK
Sbjct: 71 FKYNEKIKQREARRNQS-----TAEIKEIRFRLKIDDHDFEVKKGHVERFLNGGDKVKVT 125
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL D + ++ +ES P E
Sbjct: 126 IMLRG-REQSRPIGGVELLQRLADEVSEVGTIESAPKQE 163
>gi|300021917|ref|YP_003754528.1| translation initiation factor IF-3 [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523738|gb|ADJ22207.1| translation initiation factor IF-3 [Hyphomicrobium denitrificans
ATCC 51888]
Length = 176
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKI 133
+E GPR+ND+I A+ VRL+ + G V +++ +ALA A + DLVE+ A PPVCKI
Sbjct: 8 RENQGPRINDQIRAREVRLIDENGQNVGVIAKFDALARAGDVGLDLVEISPDAEPPVCKI 67
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+DF K K+Q++ K + K + + L KE++ I+ D +K +KR ++G
Sbjct: 68 LDFGKFKFQEQKKAAEARKNQKIVEL-----KEIKMRPGIDDHDYDVKLRAIKRFFEEGD 122
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ LG L R+ E I+ VES P E +Q ++
Sbjct: 123 KVKITLRFRGREMAHSQLGMAVLQRVKVDTEAIAKVESEPRFEGRQMVMVL 173
>gi|404496272|ref|YP_006720378.1| translation initiation factor IF-3 [Geobacter metallireducens
GS-15]
gi|115311715|sp|Q39VS8.2|IF3_GEOMG RecName: Full=Translation initiation factor IF-3
gi|403378039|gb|ABB31646.2| translation initiation factor IF-3 [Geobacter metallireducens
GS-15]
Length = 172
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLV--LDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A+ +R+V E ++ +EALALA S Q DLVEV A PPVC+IMD+ K K
Sbjct: 8 VNQAIRAREIRVVGANSEQLGIMPLNEALALAESQQLDLVEVSPTAVPPVCRIMDYGKFK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K ++ K +S + + KEV+ K ++ DLQ K V+R +++G + K +
Sbjct: 68 YQQSKKLQEAKKKQSHVVV-----KEVKLRPKTDEHDLQFKIKHVRRFIEEGNKAKVTLV 122
Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L R+ IEDI+V+E P +E + + I+
Sbjct: 123 FRGREITHMEFGVRALERVASEIEDIAVIEMKPKMEGRSMFMIV 166
>gi|309810986|ref|ZP_07704784.1| translation initiation factor IF-3 [Dermacoccus sp. Ellin185]
gi|308434950|gb|EFP58784.1| translation initiation factor IF-3 [Dermacoccus sp. Ellin185]
Length = 242
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPV 130
K++ ++ PR+ND+I VRLV G +V V +AL LA DLVEV +A PPV
Sbjct: 22 KEQAISAEPRINDRIRVPEVRLVGPNGEQVGIVRVEDALRLAAEADLDLVEVAPQAKPPV 81
Query: 131 CKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMD 190
K+MDF K KY+ +K ++ K + + + KE++ KI+Q D K V R +
Sbjct: 82 AKLMDFGKFKYEAAMKARESRKNQVNTVI-----KEIKLRPKIDQHDYDTKKGHVVRFLS 136
Query: 191 KGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFG 249
G +VK + G+++ +LG L +L + +++++ +ES P + + ++ G
Sbjct: 137 AGDKVKVTIMFRGREQSRPELGFRLLQKLAEDVQELAFIESAPKQDGRNMVMVL-----G 191
Query: 250 PSKK 253
P+KK
Sbjct: 192 PTKK 195
>gi|217967696|ref|YP_002353202.1| translation initiation factor IF-3 [Dictyoglomus turgidum DSM 6724]
gi|217336795|gb|ACK42588.1| translation initiation factor IF-3 [Dictyoglomus turgidum DSM 6724]
Length = 185
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 7/151 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI A+ +R+V ++G + ++ EAL LAR DLVEV ANPPVCKIMDF K
Sbjct: 6 RVNEKIRAREIRVVDEDGKQLGIMPVSEALKLARERNLDLVEVAPNANPPVCKIMDFGKF 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ KEK+ AK I + KE++ IE+ D Q+K ++ ++KGY+V+ +
Sbjct: 66 KYELARKEKE-AKKNQKIA---SEVKEIKIRPNIEEHDYQVKLRKIREFLEKGYKVRLII 121
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVE 229
L G++ + G L R++ I D+ E
Sbjct: 122 LFKGRQLIYNEWGDKLLERILQDISDLGTAE 152
>gi|350564586|ref|ZP_08933403.1| translation initiation factor IF-3 [Thioalkalimicrobium aerophilum
AL3]
gi|349777605|gb|EGZ31968.1| translation initiation factor IF-3 [Thioalkalimicrobium aerophilum
AL3]
Length = 157
Score = 86.7 bits (213), Expect = 3e-14, Method: Composition-based stats.
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 13/166 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ EG +V V+ EAL +A + DLVE+ KA PPVC+IMD+ K YQ++ K+ D
Sbjct: 1 MRLIDAEGEQVGVVATAEALTMAEAAGLDLVEIAAKAEPPVCRIMDYGKFIYQQQKKQHD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K + + + KEV+F E+ D Q+K + R +++G RVK G++ +
Sbjct: 61 AKKNQKQVQV-----KEVKFRPGTEEGDYQVKLRNLMRFLEQGDRVKVTIWFRGREITHK 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+LG L R+ +E+++ VE P +E +Q +I P+KKG
Sbjct: 116 ELGMKMLDRIKGDVEEVATVEQEPKMEGRQMQMMI-----APTKKG 156
>gi|290961732|ref|YP_003492914.1| translation initiation factor IF-3 [Streptomyces scabiei 87.22]
gi|260651258|emb|CBG74380.1| translation initiation factor IF-3 [Streptomyces scabiei 87.22]
Length = 232
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 STEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +ED+ VES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGYRLLQRLASDVEDLGFVESNPKQDGRNMIMVL-----GPHKK 178
>gi|261855918|ref|YP_003263201.1| translation initiation factor IF-3 [Halothiobacillus neapolitanus
c2]
gi|261836387|gb|ACX96154.1| translation initiation factor IF-3 [Halothiobacillus neapolitanus
c2]
Length = 190
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 10/167 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ VRLV + G + +V +AL A ++ DLVEV ANPPVCKIMD+ K
Sbjct: 24 PRINNEITAREVRLVDENGEQAGIVRTRDALDRAAEVELDLVEVAANANPPVCKIMDYGK 83
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+Q+ K + K + I + KE++F E D Q+K ++ R +++G +VK
Sbjct: 84 FKFQQSKKLAEARKKQKQI-----EVKEIKFRPGTEDHDYQVKMRSILRFLEEGDKVKIT 138
Query: 199 ALPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ +++ G L I DLIE ++ VE P +E +Q ++
Sbjct: 139 LRFRGREMAHKEVAGVLLDRIEQDLIE-LATVEQRPKMEGRQVTMVL 184
>gi|83943233|ref|ZP_00955693.1| translation initiation factor [Sulfitobacter sp. EE-36]
gi|83954368|ref|ZP_00963088.1| translation initiation factor [Sulfitobacter sp. NAS-14.1]
gi|83841405|gb|EAP80575.1| translation initiation factor [Sulfitobacter sp. NAS-14.1]
gi|83846241|gb|EAP84118.1| translation initiation factor [Sulfitobacter sp. EE-36]
Length = 201
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+N+ I A +RL+ +G V V+ A+ +A DLVE+ ANPPVCKIMDF
Sbjct: 33 TGPRINENIRANEIRLIGADGENVGVVTPDRAMEMAVDAGLDLVEISPNANPPVCKIMDF 92
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ + +E + A+ K I + KEV+F + D +K V + +D G +VK
Sbjct: 93 GKFKYETQKREAE-ARKKQKII----EIKEVKFRPNTDTNDYDVKMRNVFKFLDNGDKVK 147
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + +++ VE+ P +E +Q +I
Sbjct: 148 ITLRFRGREMAHQNLGRELLERVAEDTKEVGRVENFPKMEGRQMVMLI 195
>gi|381166427|ref|ZP_09875642.1| Translation initiation factor IF-3 [Phaeospirillum molischianum DSM
120]
gi|380684469|emb|CCG40454.1| Translation initiation factor IF-3 [Phaeospirillum molischianum DSM
120]
Length = 173
Score = 86.7 bits (213), Expect = 3e-14, Method: Composition-based stats.
Identities = 57/169 (33%), Positives = 97/169 (57%), Gaps = 8/169 (4%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+ GPR+N +I+ + +RLV +G VV+ E L +A DLVEV A+PPVCKI+D
Sbjct: 7 SDGPRVNREIDVRSIRLVGADGEMIGVVTLREGLLMAEEAGLDLVEVSPNADPPVCKILD 66
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K KY+ + K+K+ A+ K + + KE++ I++ D +K ++K+ +D+G +V
Sbjct: 67 FGKFKYEAQ-KKKNEARKKQKVI----EVKEIKLRPNIDENDYGVKMRSMKKFLDEGDKV 121
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
K G++ +D+G L ++ D +E + VE P +E +Q +I
Sbjct: 122 KVTMRFRGRELAHQDIGMKLLEQVRDDLEALGKVEQVPKMEGRQMVMVI 170
>gi|384189802|ref|YP_005575550.1| Bacterial Protein Translation Initiation Factor 3 (IF-3)
[Bifidobacterium animalis subsp. lactis BB-12]
gi|384192591|ref|YP_005578338.1| Bacterial Protein Translation Initiation Factor 3 (IF-3)
[Bifidobacterium animalis subsp. lactis CNCM I-2494]
gi|289177294|gb|ADC84540.1| Bacterial Protein Translation Initiation Factor 3 (IF-3)
[Bifidobacterium animalis subsp. lactis BB-12]
gi|340365328|gb|AEK30619.1| Bacterial Protein Translation Initiation Factor 3 (IF-3)
[Bifidobacterium animalis subsp. lactis CNCM I-2494]
Length = 233
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 20 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 79
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K+++ + +S + KE+RF KI+ D ++K V+R ++ G +VK
Sbjct: 80 FKYNEKIKQREARRNQS-----TAEIKEIRFRLKIDDHDFEVKKGHVERFLNAGDKVKVT 134
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL + + D+ VE P E
Sbjct: 135 IMLRG-REQSRPIGGVEMLQRLAEEVSDLGTVEHAPKQE 172
>gi|269958354|ref|YP_003328141.1| translation initiation factor IF-3 [Anaplasma centrale str. Israel]
gi|269848183|gb|ACZ48827.1| translation initiation factor IF-3 [Anaplasma centrale str. Israel]
Length = 177
Score = 86.7 bits (213), Expect = 3e-14, Method: Composition-based stats.
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 10/162 (6%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E GPR+N+ I A+ VRLV ++G V V EA+A AR + DLVEV PVCKI
Sbjct: 2 ERKGPRINELITAKRVRLVDEKGSMVGIVDIGEAIATAREAELDLVEVVSDGELPVCKIF 61
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
++ K+KY K+ R S + KE++F IE D +K + +K ++KG +
Sbjct: 62 NYSKQKYNKKKSVGPRKNKSSSL-------KELKFRLNIEDNDYNIKLNNLKGFIEKGNK 114
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VK VG++ + +++G G L RL++ E ++ ES P ++
Sbjct: 115 VKVSIRFVGRELQYKEVGLGILDRLVNDTEGVARPESSPRMD 156
>gi|402570738|ref|YP_006620081.1| translation initiation factor 3 (bIF-3) [Desulfosporosinus meridiei
DSM 13257]
gi|402251935|gb|AFQ42210.1| bacterial translation initiation factor 3 (bIF-3)
[Desulfosporosinus meridiei DSM 13257]
Length = 178
Score = 86.7 bits (213), Expect = 3e-14, Method: Composition-based stats.
Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I + VRLV +EG + +++ +AL+LA DLVE+ A PPVCK+MD+ K
Sbjct: 13 RINDEIRVRDVRLVGEEGEQLGIMTSRDALSLAIEKSLDLVEIAPTAKPPVCKLMDYGKY 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ ++K+ K + K + KEV+ IE D + KA +R + G +VK
Sbjct: 73 KYEQAKRDKEARKKQ-----KSMEIKEVKLRPNIEDHDFETKARNAQRFLQDGDKVKVTI 127
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ +LG L RL + + S VE P +E + I+ +K
Sbjct: 128 MFRGREVTHPELGRALCIRLAEFCKAESTVEREPKLEGRNMIMILASIK 176
>gi|84502675|ref|ZP_01000794.1| translation initiation factor [Oceanicola batsensis HTCC2597]
gi|84389070|gb|EAQ01868.1| translation initiation factor [Oceanicola batsensis HTCC2597]
Length = 164
Score = 86.3 bits (212), Expect = 3e-14, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A VRL+ EG VV+ A+ALA + DLVE+ A PPVCKIMDF K K
Sbjct: 1 MNDRIRAPEVRLIGAEGENLGVVTPERAMALAEQAELDLVEISPNATPPVCKIMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ +E + K + I + KEV+F + D +K V + ++KG +VK
Sbjct: 61 YEQQKRESEARKKQKTI-----EVKEVKFRPNTDTHDYDVKMRNVVKFLEKGDKVKVTLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + + +I VE+ P +E +Q +I
Sbjct: 116 FRGREMAHQNLGRELLERVAEDVREIGKVENMPKMEGRQMIMMI 159
>gi|182439698|ref|YP_001827417.1| translation initiation factor IF-3 [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326780362|ref|ZP_08239627.1| Translation initiation factor IF-3 [Streptomyces griseus XylebKG-1]
gi|62896304|emb|CAH94290.1| translation initiation factor IF-3 [Streptomyces griseus subsp.
griseus]
gi|178468214|dbj|BAG22734.1| putative translation initiation factor IF-3 [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326660695|gb|EGE45541.1| Translation initiation factor IF-3 [Streptomyces griseus XylebKG-1]
Length = 238
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K
Sbjct: 24 PRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAATARPPVCKLMDYGK 83
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +VK
Sbjct: 84 FKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKIT 138
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ G+++ +LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 139 IMFRGREQSRPELGFRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 189
>gi|56964454|ref|YP_176185.1| translation initiation factor IF-3 [Bacillus clausii KSM-K16]
gi|61213073|sp|Q5WEI6.1|IF3_BACSK RecName: Full=Translation initiation factor IF-3
gi|56910697|dbj|BAD65224.1| translation initiation factor IF-3 [Bacillus clausii KSM-K16]
Length = 167
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRLV G + V S+HEAL +A+ + DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEGIRAREVRLVGANGDQIGVKSKHEALEMAQRVNLDLVCVAPNAKPPVCRIMDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + IT+ KEVR S IE D K ++ ++KG +VK
Sbjct: 63 YEQQKKEKEARKNQKVITI-----KEVRLSPTIEANDFNTKLRNARKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +G L RL EDI+ +E+ P +E + + ++
Sbjct: 118 FRGRAITHSQIGRDVLERLAKECEDIATIEARPKMEGRSMFLVM 161
>gi|260426749|ref|ZP_05780728.1| translation initiation factor IF-3 [Citreicella sp. SE45]
gi|260421241|gb|EEX14492.1| translation initiation factor IF-3 [Citreicella sp. SE45]
Length = 235
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+ND+I A +RL+ EG + + A+ LA DLVE+ ANPPVCKIMDF
Sbjct: 68 TGPRVNDRIRAPEIRLIGAEGENLGVQPPRRAMELAEQAGLDLVEISPNANPPVCKIMDF 127
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KE++F + D +K V + ++ G +VK
Sbjct: 128 GKFKYEQQKRESE-ARKKQKII----EVKEIKFRPGTDTHDYDVKMRNVLKFLENGDKVK 182
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + ++++ VE+ P +E +Q +I
Sbjct: 183 ITLRFRGREMAHQNLGRELLERVAEDVKELGKVENMPKMEGRQMIMMI 230
>gi|59800744|ref|YP_207456.1| translation initiation factor IF-3 [Neisseria gonorrhoeae FA 1090]
gi|121634518|ref|YP_974763.1| translation initiation factor IF-3 [Neisseria meningitidis FAM18]
gi|218767843|ref|YP_002342355.1| translation initiation factor IF-3 [Neisseria meningitidis Z2491]
gi|54037381|sp|P65138.1|IF3_NEIMB RecName: Full=Translation initiation factor IF-3
gi|54041111|sp|P65137.1|IF3_NEIMA RecName: Full=Translation initiation factor IF-3
gi|75507420|sp|Q5F9U3.1|IF3_NEIG1 RecName: Full=Translation initiation factor IF-3
gi|166198958|sp|A1KSY3.1|IF3_NEIMF RecName: Full=Translation initiation factor IF-3
gi|59717639|gb|AAW89044.1| putative translation initiation factor IF-3 [Neisseria gonorrhoeae
FA 1090]
gi|120866224|emb|CAM09964.1| putative translation initiation factor IF-3 [Neisseria meningitidis
FAM18]
gi|121051851|emb|CAM08157.1| putative translation initiation factor IF-3 [Neisseria meningitidis
Z2491]
Length = 173
Score = 86.3 bits (212), Expect = 4e-14, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K
Sbjct: 9 RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ K++D AK K+ KE++F ++ D Q+K + R + G +VK
Sbjct: 69 KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173
>gi|254385012|ref|ZP_05000346.1| translation initiation factor IF-3 [Streptomyces sp. Mg1]
gi|194343891|gb|EDX24857.1| translation initiation factor IF-3 [Streptomyces sp. Mg1]
Length = 243
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 STEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGYRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 178
>gi|392423571|ref|YP_006464565.1| bacterial translation initiation factor 3 (bIF-3)
[Desulfosporosinus acidiphilus SJ4]
gi|391353534|gb|AFM39233.1| bacterial translation initiation factor 3 (bIF-3)
[Desulfosporosinus acidiphilus SJ4]
Length = 171
Score = 85.9 bits (211), Expect = 5e-14, Method: Composition-based stats.
Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
RLND+I + VRLV +EG + +++ +AL LA DLVE+ A PPVCK+MD+ K
Sbjct: 6 RLNDEIRVREVRLVGEEGEQLGIMAVRDALNLAVEKSLDLVEIAPTAKPPVCKLMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K+K+ K + K + KEV+ IE D + KA + +R + +G +VK
Sbjct: 66 KYEQAKKDKEARKKQ-----KSMEIKEVKLRPNIEDHDFETKARSAQRFLSEGDKVKVTI 120
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ +LG L RL + + S +E P +E + I+ +K
Sbjct: 121 MFRGREVTHPELGKTLCLRLAEFCKAESSIEREPKLEGRNMIMILASIK 169
>gi|29833279|ref|NP_827913.1| translation initiation factor IF-3 [Streptomyces avermitilis
MA-4680]
gi|39931256|sp|Q828D2.1|IF3_STRAW RecName: Full=Translation initiation factor IF-3
gi|29610401|dbj|BAC74448.1| putative translation initiation factor IF-3 [Streptomyces
avermitilis MA-4680]
Length = 241
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 STEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +ED+ VES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGYRLLQRLATDVEDLGFVESSPKQDGRNMIMVL-----GPHKK 178
>gi|320335393|ref|YP_004172104.1| translation initiation factor IF-3 [Deinococcus maricopensis DSM
21211]
gi|319756682|gb|ADV68439.1| Translation initiation factor IF-3 [Deinococcus maricopensis DSM
21211]
Length = 198
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 10/155 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + VRL+ DEG +V + EA+A+AR DLV V A PPVCK+MD+ +
Sbjct: 8 KINEQIRVRQVRLIDDEGGQVGIIDTREAMAMARQKSLDLVMVGPTAVPPVCKLMDYGRF 67
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ EK+ R +A++ + K ++F KI+ D + K + V+R + +G++VK
Sbjct: 68 RYEQQQNEKENRKRARAH------EVKAIKFRVKIDDNDFKTKTNHVRRFLQEGHKVKVT 121
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + + DI ES P
Sbjct: 122 IMFRGRERTHPELGERILHRVAETLADIGAPESTP 156
>gi|357419566|ref|YP_004932558.1| translation initiation factor IF-3 [Thermovirga lienii DSM 17291]
gi|355397032|gb|AER66461.1| translation initiation factor IF-3 [Thermovirga lienii DSM 17291]
Length = 195
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ V L+ ++G KV V AL +A + DLVEV +ANPPVC+I+D+ K
Sbjct: 8 PRVNNEIRAKEVLLIDEKGVKVGVVPLARALDIAEERELDLVEVAPQANPPVCRILDYGK 67
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KYQ + KEKD A+ KS K KE++ KI+Q D + K ++ + G+RVK
Sbjct: 68 YKYQLQKKEKD-ARKKS----KAQTVKEMKMRPKIDQHDYEFKTKAIRNFLADGHRVKVA 122
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ D G L R+I +D+ VE P +E
Sbjct: 123 VFFRGREMAFLDKGREVLERVIKDCQDVGKVEMEPRME 160
>gi|365840175|ref|ZP_09381376.1| translation initiation factor IF-3 [Anaeroglobus geminatus F0357]
gi|364562230|gb|EHM40098.1| translation initiation factor IF-3 [Anaeroglobus geminatus F0357]
Length = 167
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VRLV D + V+S A +A + DLVEV ANPPVC+IM++ K
Sbjct: 2 RINEQIRAKDVRLVSDTNEQLGVMSLRSARQIAEERRLDLVEVASNANPPVCRIMNYGKY 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + TL KEV+ IE D +K +R +D+G +VK
Sbjct: 62 RYEQQKREKEAKKKQKVFTL-----KEVKLRPNIEDHDFYVKMKAAQRFLDEGSKVKVTI 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R D +++++ VE P +E + +I
Sbjct: 117 MFRGREMSHPELGEKLLVRFADELKEVAHVEKAPKIEGRNMTMVI 161
>gi|297195409|ref|ZP_06912807.1| translation initiation factor IF-3 [Streptomyces pristinaespiralis
ATCC 25486]
gi|197719221|gb|EDY63129.1| translation initiation factor IF-3 [Streptomyces pristinaespiralis
ATCC 25486]
Length = 216
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGFRLLQRLAADVEDLGFIESNPKQDGRNMIMVL-----GPHKK 178
>gi|389864880|ref|YP_006367121.1| translation initiation factor IF-3 [Modestobacter marinus]
gi|388487084|emb|CCH88640.1| Translation initiation factor IF-3 [Modestobacter marinus]
Length = 213
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRLV EG +V VS EAL LA+ + DLVEV A PPV K+MD+ K
Sbjct: 17 PRINDRIRVPEVRLVGPEGEQVGVVSIGEALRLAQDSELDLVEVAPMARPPVVKLMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ K ++ A+ +T+ KE+R KI+ D + K V+R + G +VK
Sbjct: 77 FKYEAAQKARE-ARRNQALTV----IKEMRLRLKIDPHDYETKKGHVERFLKGGDKVKIT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G+++ ++G L RL + D+ VVES P + + +I
Sbjct: 132 VMFRGREQSRPEMGYKLLQRLAGDVADLGVVESNPKQDGRNMVMVI 177
>gi|303237190|ref|ZP_07323760.1| translation initiation factor IF-3 [Prevotella disiens FB035-09AN]
gi|302482577|gb|EFL45602.1| translation initiation factor IF-3 [Prevotella disiens FB035-09AN]
Length = 228
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 105/190 (55%), Gaps = 22/190 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I+A+ VR++ DEG +V+S +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKMKFQYRVNEQIHAREVRVISDEGAEVMSARKALDIARKEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K + KE+RF + ++ D Q K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQV----------KQEIKEIRFGPQTDEHDYQFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++ G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLNDGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKK 253
K G +KK
Sbjct: 169 APKKTGITKK 178
>gi|271967366|ref|YP_003341562.1| translation initiation factor 3 (IF-3)-like protein
[Streptosporangium roseum DSM 43021]
gi|270510541|gb|ACZ88819.1| Translation initiation factor 3 (IF-3)-like protein
[Streptosporangium roseum DSM 43021]
Length = 222
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 23/202 (11%)
Query: 45 FWESAVKTPNDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV-- 102
W+ KT D R P+ A+ PR+ND+I VRLV G +V
Sbjct: 1 MWQPPPKTAAD-----RNLGGPISAE----------PRINDRIRVPEVRLVGPNGEQVGI 45
Query: 103 VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKG 162
VS +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ A+ T+
Sbjct: 46 VSIGDALKLAQESDLDLVEVAATARPPVCKLMDYGKFKYESAMKARE-ARRNQAYTI--- 101
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDL 221
KE++ KI+ D + K V R + G +VK + G+++ +LG L RL +
Sbjct: 102 -IKEIKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIMFRGREQSRPELGFRLLQRLAED 160
Query: 222 IEDISVVESGPHVERKQAYAII 243
+ D+ VES P + + +I
Sbjct: 161 VTDLGFVESQPKQDGRNMIMVI 182
>gi|406670339|ref|ZP_11077591.1| translation initiation factor IF-3 [Facklamia ignava CCUG 37419]
gi|405579646|gb|EKB53741.1| translation initiation factor IF-3 [Facklamia ignava CCUG 37419]
Length = 185
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +R++ D G + V S +AL +A S + DLV V A PPV +IMD+ K +
Sbjct: 21 INENIRARELRVIGDNGEQIGVKSLDDALTIAESFELDLVLVSPNAKPPVARIMDYGKYR 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ + KEK++ K + I + KE+R S IE+ D Q K R ++KG +VK
Sbjct: 81 YELQKKEKEQRKNQRVIAV-----KEIRLSPSIEEHDYQTKLRQAIRFLEKGDKVKVSIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +D+G + ID +ISVVES P +E + +AII
Sbjct: 136 FRGREITHKDIGKDVIEDFIDDTSEISVVESRPKMEGRSMFAII 179
>gi|183602462|ref|ZP_02963828.1| translation initiation factor If-3 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683224|ref|YP_002469607.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis AD011]
gi|241191184|ref|YP_002968578.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196590|ref|YP_002970145.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|384194181|ref|YP_005579927.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195746|ref|YP_005581491.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis V9]
gi|386867320|ref|YP_006280314.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|387821050|ref|YP_006301093.1| translation initiation factor 3 [Bifidobacterium animalis subsp.
lactis B420]
gi|387822729|ref|YP_006302678.1| translation initiation factor 3 [Bifidobacterium animalis subsp.
lactis Bi-07]
gi|423679713|ref|ZP_17654589.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis BS 01]
gi|183218381|gb|EDT89026.1| translation initiation factor If-3 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219620874|gb|ACL29031.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis AD011]
gi|240249576|gb|ACS46516.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240251144|gb|ACS48083.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295794177|gb|ADG33712.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis V9]
gi|345283040|gb|AEN76894.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366040712|gb|EHN17225.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
lactis BS 01]
gi|385701403|gb|AFI63351.1| translation initiation factor IF-3 [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|386653751|gb|AFJ16881.1| Translation initiation factor 3 [Bifidobacterium animalis subsp.
lactis B420]
gi|386655337|gb|AFJ18466.1| Translation initiation factor 3 [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 224
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 11 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K+++ + +S + KE+RF KI+ D ++K V+R ++ G +VK
Sbjct: 71 FKYNEKIKQREARRNQS-----TAEIKEIRFRLKIDDHDFEVKKGHVERFLNAGDKVKVT 125
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL + + D+ VE P E
Sbjct: 126 IMLRG-REQSRPIGGVEMLQRLAEEVSDLGTVEHAPKQE 163
>gi|403070329|ref|ZP_10911661.1| translation initiation factor IF-3 [Oceanobacillus sp. Ndiop]
Length = 167
Score = 85.9 bits (211), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI A+ VRL+ G + V +R EAL +A + DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEKIRAREVRLIDSNGDQLGVKTRQEALEIATTRNLDLVMVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVRF+ I D + K ++ ++KG +VK
Sbjct: 63 FEQQKKEKEARKKQKVINV-----KEVRFTPGIGDHDFETKLKNARKFLEKGDKVKAAVR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L R D ++DI+ +E+ P +E + + ++
Sbjct: 118 FRGRAITHKELGREVLDRFADEVKDIATIETKPKMEGRNMFMMV 161
>gi|319407917|emb|CBI81571.1| translation initiation factor IF-3 [Bartonella schoenbuchensis R1]
Length = 172
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG +++ EALA+A + DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPCVQLINDEGQNQGIIATQEALAMAADVGLDLVEIVPNAEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D ++K V R +D G +
Sbjct: 65 DLGKLKYQNQKKAAETRKKQKTI-----EVKEIKMRPNVDVHDYEVKLKAVHRFIDHGNK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +ES P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGMKLLQRVKEDTSEIAKIESEPKLEGRQMMMVI 169
>gi|386360943|ref|YP_006059188.1| translation initiation factor IF-3 [Thermus thermophilus JL-18]
gi|20138516|sp|Q9ACJ8.1|IF3_THET2 RecName: Full=Translation initiation factor IF-3
gi|75520532|sp|Q70YI5.1|IF3_THETH RecName: Full=Translation initiation factor IF-3
gi|134048675|sp|Q5SKU2.2|IF3_THET8 RecName: Full=Translation initiation factor IF-3
gi|13508846|emb|CAC35168.1| translation initiation factor-3 (IF3) [Thermus thermophilus HB27]
gi|21901946|emb|CAD42331.1| translation initiation factor 3 [Thermus thermophilus]
gi|383509970|gb|AFH39402.1| translation initiation factor IF-3 [Thermus thermophilus JL-18]
Length = 171
Score = 85.5 bits (210), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 84 NDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
N++I A+ VR+V +G + ++ EAL LA+ + DLV V A+PPV +IMD+ K +Y
Sbjct: 7 NERIRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRY 66
Query: 142 QKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ EK+ R KA K+ + K ++F KI++ D Q K +KR + +G++VK +
Sbjct: 67 EQQMAEKEARKKA------KRTEVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIM 120
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G++ +LG L+R+ + ++D++VVE P + + ++ VK
Sbjct: 121 FRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNMLLAPVK 168
>gi|333374360|ref|ZP_08466238.1| translation initiation factor IF3 [Desmospora sp. 8437]
gi|332967751|gb|EGK06857.1| translation initiation factor IF3 [Desmospora sp. 8437]
Length = 166
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G+++ + EAL LAR DLV V KA PPVC+IMD+ K +
Sbjct: 1 MNEAIRAREVRLIDSDGNQLGIQPLREALRLAREADLDLVNVAPKAKPPVCRIMDYGKYR 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ +EK+ K + I + KE+RFS IE+ D+ K VK+ + G +VK
Sbjct: 61 YEQSKREKEARKNQKTIQI-----KEIRFSPSIEEHDVNTKLRNVKKFLSNGDKVKLTIR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +D+G L+R+ + +++I VE P +E + I+
Sbjct: 116 FRGREITHQDIGRRILNRMAEEVKEIGDVERYPKMEGRHMIMIL 159
>gi|302550252|ref|ZP_07302594.1| translation initiation factor IF-3 [Streptomyces viridochromogenes
DSM 40736]
gi|302467870|gb|EFL30963.1| translation initiation factor IF-3 [Streptomyces viridochromogenes
DSM 40736]
Length = 216
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 2 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 62 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 116
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 117 KITIMFRGREQSRPELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 170
>gi|294628445|ref|ZP_06707005.1| translation initiation factor IF-3 [Streptomyces sp. e14]
gi|292831778|gb|EFF90127.1| translation initiation factor IF-3 [Streptomyces sp. e14]
Length = 224
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 178
>gi|284991466|ref|YP_003410020.1| translation initiation factor IF-3 [Geodermatophilus obscurus DSM
43160]
gi|284064711|gb|ADB75649.1| translation initiation factor IF-3 [Geodermatophilus obscurus DSM
43160]
Length = 212
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRLV EG +V VS EAL LA+ + DLVEV A PPV K+MD+ K
Sbjct: 23 PRINDRIRVPEVRLVGPEGEQVGVVSIGEALRLAQDSELDLVEVAPMAKPPVAKLMDYGK 82
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ K ++ A+ +T+ KE+R KI+ D + K V+R + G +VK
Sbjct: 83 FKYESAQKARE-ARRNQALTV----IKEMRLRLKIDPHDYETKKGHVERFLRSGDKVKIT 137
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G+++ ++G L RL + ++ VVES P + + +I
Sbjct: 138 VMFRGREQSRPEMGYRLLQRLAQDVSELGVVESNPKQDGRNMVMVI 183
>gi|302518074|ref|ZP_07270416.1| translation initiation factor IF-3 [Streptomyces sp. SPB78]
gi|333028250|ref|ZP_08456314.1| putative translation initiation factor IF-3 [Streptomyces sp.
Tu6071]
gi|302426969|gb|EFK98784.1| translation initiation factor IF-3 [Streptomyces sp. SPB78]
gi|332748102|gb|EGJ78543.1| putative translation initiation factor IF-3 [Streptomyces sp.
Tu6071]
Length = 229
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 13/182 (7%)
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCK 132
E + PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK
Sbjct: 12 EPRIAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCK 71
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
+MD+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G
Sbjct: 72 LMDYGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQG 126
Query: 193 YRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPS 251
+VK + G+++ +LG L RL D ++D+ +ES P + + ++ GP
Sbjct: 127 DKVKITIMFRGREQSRPELGRRLLQRLADDVQDLGFIESSPKQDGRNMIMVL-----GPH 181
Query: 252 KK 253
KK
Sbjct: 182 KK 183
>gi|452990464|emb|CCQ98364.1| initiation factor IF-3 [Clostridium ultunense Esp]
Length = 166
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I A+ VRL+ +G ++ V EAL A+ L DLV + +A PPVC+IMDF K
Sbjct: 4 QVNEEIRAREVRLIGPDGEQIGIVPLREALLKAQDLNLDLVNIAPQATPPVCRIMDFGKY 63
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
++++ KEK+ K + I + KEVRFS IE+ D K V ++KG +VKC
Sbjct: 64 RFEQSKKEKEARKKQKVINM-----KEVRFSATIEEHDFSTKLRHVISFLEKGDKVKCTL 118
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +G ++R+++ ++I+ VE P +E + I+
Sbjct: 119 RFKGRQITHSQIGVNVMNRIMEETKEIASVEKKPGIEGRSMIMIL 163
>gi|323344264|ref|ZP_08084490.1| translation initiation factor IF3 [Prevotella oralis ATCC 33269]
gi|323094993|gb|EFZ37568.1| translation initiation factor IF3 [Prevotella oralis ATCC 33269]
Length = 230
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 103/185 (55%), Gaps = 12/185 (6%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V D+G V+ +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKMNNQYRVNEQIRVREVRIVGDDGSTVMPTRQALDMARQQGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
++D+ K YQ++ ++K+ KAK K + KE+RF + ++ D Q K K +++G
Sbjct: 62 LIDYSKFLYQQKKRQKE-MKAKQ----VKVEVKEIRFGPQTDEHDYQFKLKHAKEFLNEG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+V+ G+ KE+ E L L R + +E++ VE P +E K+ + + K
Sbjct: 117 NKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELGKVEQMPKLEGKKMFLYLAPKKV 173
Query: 249 GPSKK 253
G +KK
Sbjct: 174 GVAKK 178
>gi|294811660|ref|ZP_06770303.1| Translation initiation factor IF-3 [Streptomyces clavuligerus ATCC
27064]
gi|294324259|gb|EFG05902.1| Translation initiation factor IF-3 [Streptomyces clavuligerus ATCC
27064]
Length = 230
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 25 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 84
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 85 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 139
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 140 KITIMFRGREQSRPELGFRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 193
>gi|288959314|ref|YP_003449655.1| translation initiation factor IF-3 [Azospirillum sp. B510]
gi|288911622|dbj|BAI73111.1| translation initiation factor IF-3 [Azospirillum sp. B510]
Length = 187
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+N +I+A+ VRLV +G VVS +AL A DLVEV +A PPVCKI+D+
Sbjct: 23 GPRVNREISARSVRLVGADGEMIGVVSLRDALLAAEDAGLDLVEVAPQAEPPVCKILDYG 82
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+ + K+ + A+ K I + KE++ I+ D +K +R +++G +VK
Sbjct: 83 KFKYEAQ-KKANEARKKQKII----EVKEIKLRPNIDDNDYDVKMRAARRFLEEGDKVKV 137
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ D +++++ VE P +E +Q ++
Sbjct: 138 TMRFRGREMAHQDLGMNVLVRVRDALDELAKVEQMPKLEGRQMIMVL 184
>gi|395767534|ref|ZP_10448067.1| translation initiation factor IF-3 [Bartonella doshiae NCTC 12862]
gi|395413897|gb|EJF80350.1| translation initiation factor IF-3 [Bartonella doshiae NCTC 12862]
Length = 172
Score = 85.1 bits (209), Expect = 8e-14, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG +V+ EALA+A + DLVE+ A+PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPCVQLINDEGQHQGIVTIQEALAMAEDVGLDLVEIVPNADPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K V R +D G +
Sbjct: 65 DLGKLKYQTQKKAAETRKKQKVIEI-----KEIKMRPNVDVHDYGVKLKAVHRFIDNGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +ES P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLRLLQRVKEDTSEIAKIESEPKLEGRQMMMVI 169
>gi|381206815|ref|ZP_09913886.1| translation initiation factor IF-3 [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 186
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 98/181 (54%), Gaps = 13/181 (7%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKI 133
K+ R+ND+I A +RL+ EG +V ++ +AL A+S DLVEV KA+PPVC++
Sbjct: 15 KQDDSIRVNDQITAPRIRLIDGEGGQVGVITVADALIRAQSDGLDLVEVSPKADPPVCRL 74
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
MD+ K KYQ+ K + AK + KEV+ KIE DLQ K R +++G
Sbjct: 75 MDYGKFKYQQS-KRQHAAKVHQKVI----HLKEVKLRPKIEDHDLQFKVRNALRFLEEGD 129
Query: 194 RVKCMALPVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
+VK + +G++ +DLG L R ++I + +VE E + + I+ PSK
Sbjct: 130 KVKVNVVFMGREMAHKDLGLVLIERFQNMIGENGIVEQPVRNEGRSMFMIL-----APSK 184
Query: 253 K 253
K
Sbjct: 185 K 185
>gi|429218649|ref|YP_007180293.1| translation initiation factor IF-3 [Deinococcus peraridilitoris DSM
19664]
gi|429129512|gb|AFZ66527.1| translation initiation factor IF-3 [Deinococcus peraridilitoris DSM
19664]
Length = 222
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 91/156 (58%), Gaps = 10/156 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + VRL+ DEG +V + EA+A+AR DLV V A PPVCK++D+ +
Sbjct: 27 KINEQIRVRQVRLIDDEGGQVGIIDTREAVAMAREKNLDLVMVGPTAVPPVCKLLDYGRF 86
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ K+ R +A++ + K ++F KI+ D K + V+R +++G++VK
Sbjct: 87 RYEEQQNAKENRKRARAT------EVKSIKFRVKIDANDFNTKTNHVRRFLEEGHKVKVT 140
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPH 233
+ G++ +LG L R+ + + DI ES P+
Sbjct: 141 IMFRGRERTHPELGERILHRVAETLADIGAPESAPN 176
>gi|269215921|ref|ZP_06159775.1| translation initiation factor IF-3 [Slackia exigua ATCC 700122]
gi|269130180|gb|EEZ61258.1| translation initiation factor IF-3 [Slackia exigua ATCC 700122]
Length = 192
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PRLN +I RL+ +G + + S EAL +A + DLVE+ ANPPVC+IMD+ K
Sbjct: 9 PRLNGEIRVSECRLIGYDGVQMGIFSTREALRIAETEGLDLVEIAPNANPPVCRIMDYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY + ++ K K ++ + + KE++F KI+ D K V R + G +VK
Sbjct: 69 FKYDQAIRAKQARKNQTKV-----EIKEMKFRPKIDIGDYTTKKKHVLRFLADGAKVKIT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G L RL D ++D++V+ES P +E + + +I
Sbjct: 124 IMFRGREMAHPEQGLSILERLADDLKDVAVIESAPKMEGRNMHMMI 169
>gi|374985302|ref|YP_004960797.1| translation initiation factor IF-3 [Streptomyces bingchenggensis
BCW-1]
gi|297155954|gb|ADI05666.1| translation initiation factor IF-3 [Streptomyces bingchenggensis
BCW-1]
Length = 250
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 27/209 (12%)
Query: 48 SAVKTPNDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSR 105
+AV+ +CN P+ A+ PR+ND+I VRLV G +V V
Sbjct: 31 AAVRQTVAWCNR----GGPISAE----------PRINDRIRVPEVRLVGPSGEQVGIVPL 76
Query: 106 HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCK 165
+AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ K ++ + K
Sbjct: 77 AKALELAQEYDLDLVEVAATARPPVCKLMDYGKFKYESAMKAREARKNQAHTVI-----K 131
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIED 224
E++ KI+ D K V R + +G +VK + G+++ +LG L RL + +++
Sbjct: 132 EMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGYRLLQRLAEDVQE 191
Query: 225 ISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ VES P + + ++ GP KK
Sbjct: 192 LGFVESNPKQDGRNMIMVL-----GPHKK 215
>gi|295839837|ref|ZP_06826770.1| translation initiation factor IF-3 [Streptomyces sp. SPB74]
gi|197698676|gb|EDY45609.1| translation initiation factor IF-3 [Streptomyces sp. SPB74]
Length = 245
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 13/182 (7%)
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCK 132
E + PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK
Sbjct: 28 EPRIAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCK 87
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
+MD+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G
Sbjct: 88 LMDYGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQG 142
Query: 193 YRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPS 251
+VK + G+++ +LG L RL D ++D+ +ES P + + ++ GP
Sbjct: 143 DKVKITIMFRGREQSRPELGRRLLQRLADDVQDLGFIESSPKQDGRNMIMVL-----GPH 197
Query: 252 KK 253
KK
Sbjct: 198 KK 199
>gi|456385916|gb|EMF51469.1| infC protein [Streptomyces bottropensis ATCC 25435]
Length = 235
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 STEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGYRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 178
>gi|323141059|ref|ZP_08075964.1| translation initiation factor IF-3 [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414435|gb|EFY05249.1| translation initiation factor IF-3 [Phascolarctobacterium
succinatutens YIT 12067]
Length = 167
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VR++ + G + ++S +AL LA DLVE+ A PPVC+IMD+ K
Sbjct: 2 RINEEIRAREVRVIANGGEQLGIMSSRDALKLALENHLDLVEIAPTAKPPVCRIMDYGKY 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + K D KEV+ IE D +K R ++ G +VK
Sbjct: 62 RYEQQKREKEARKKQ-----KTFDIKEVKLRPGIEDHDFNVKYKNAVRFLEDGDKVKVTI 116
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R+ +++I+VVE P +E K I+
Sbjct: 117 MFRGRELSHPELGEVLLNRMAQQLKEIAVVERVPKLEGKNMIMIV 161
>gi|302541296|ref|ZP_07293638.1| translation initiation factor IF-3 [Streptomyces hygroscopicus ATCC
53653]
gi|302458914|gb|EFL22007.1| translation initiation factor IF-3 [Streptomyces himastatinicus
ATCC 53653]
Length = 233
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 30 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 89
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 90 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 144
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 145 KITIMFRGREQSRPELGFRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 198
>gi|440694902|ref|ZP_20877477.1| translation initiation factor IF-3 [Streptomyces turgidiscabies
Car8]
gi|440283019|gb|ELP70382.1| translation initiation factor IF-3 [Streptomyces turgidiscabies
Car8]
Length = 260
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 23 STEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMD 82
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 83 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 137
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 138 KITIMFRGREQSRPELGYRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 191
>gi|56417256|ref|YP_154330.1| translation initiation factor IF-3 [Anaplasma marginale str. St.
Maries]
gi|222475620|ref|YP_002564037.1| translation initiation factor IF-3 (infC) [Anaplasma marginale str.
Florida]
gi|254995425|ref|ZP_05277615.1| translation initiation factor IF-3 (infC) [Anaplasma marginale str.
Mississippi]
gi|255003613|ref|ZP_05278577.1| translation initiation factor IF-3 (infC) [Anaplasma marginale str.
Puerto Rico]
gi|255004742|ref|ZP_05279543.1| translation initiation factor IF-3 (infC) [Anaplasma marginale str.
Virginia]
gi|56388488|gb|AAV87075.1| translation initiation factor IF-3 [Anaplasma marginale str. St.
Maries]
gi|222419758|gb|ACM49781.1| translation initiation factor IF-3 (infC) [Anaplasma marginale str.
Florida]
Length = 177
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 10/162 (6%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E GPR+N+ I A+ VRLV ++G V V EA+A+AR + DLVEV + P+CKI
Sbjct: 2 ERKGPRINELIIARKVRLVDEKGSMVGVVDIDEAIAMAREAELDLVEVVSEGEFPICKIF 61
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
++ K+KY K+ + S + KE++F IE D +K + +K ++KG +
Sbjct: 62 NYSKQKYNKKKSGGPKRSRSSSL-------KELKFRLNIEDNDYNIKLNNLKGFIEKGNK 114
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VK VG++ + +++G G L RL++ E ++ ES P ++
Sbjct: 115 VKVSIRFVGRELQYKEVGLGILDRLVNDTEGVARPESSPRMD 156
>gi|339007674|ref|ZP_08640248.1| translation initiation factor IF-3 [Brevibacillus laterosporus LMG
15441]
gi|421871094|ref|ZP_16302716.1| translation initiation factor IF-3 [Brevibacillus laterosporus
GI-9]
gi|338774877|gb|EGP34406.1| translation initiation factor IF-3 [Brevibacillus laterosporus LMG
15441]
gi|372459721|emb|CCF12265.1| translation initiation factor IF-3 [Brevibacillus laterosporus
GI-9]
Length = 169
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + VV EAL +A+ DLV V A PPVC+IMDF K K
Sbjct: 3 VNEAIRAREVRLIGANGDQLGVVPLREALRIAQESDLDLVNVAPTAKPPVCRIMDFGKFK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ KEK+ K + + L KEVRFS IE+ D Q K V + + + ++VKC
Sbjct: 63 YEQSKKEKEARKNQKIVEL-----KEVRFSSNIEEHDFQTKLRNVLKFLGEEHKVKCTIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L R+ E ++ VE P +E + I+
Sbjct: 118 FRGREITHSEIGQQVLERVAAACEQVATVERKPKIEGRSMIMIL 161
>gi|404328586|ref|ZP_10969034.1| translation initiation factor IF-3 [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 167
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I AQ VRL+ G +V S+ EALA+AR++ DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEGIRAQQVRLIDQNGGQVGIKSKSEALAMARNVNLDLVMVAPGAKPPVCRIMDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + I++ KE+R S IE+ D K ++ ++KG +VK
Sbjct: 63 FEQQKKDREARKNQKVISI-----KEIRLSPSIEEHDFNTKMRNARKFLEKGDKVKVSVR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ DLG L +L ++SVVE+ P +E + + ++
Sbjct: 118 FRGRAITHSDLGRQVLEKLARECAEVSVVEARPKMEGRSMFLVL 161
>gi|333923254|ref|YP_004496834.1| translation initiation factor IF-3 [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333748815|gb|AEF93922.1| Translation initiation factor IF-3 [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 173
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 96/165 (58%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VR++ + ++ ++S +AL +A Q DLVEV +A PPVC+IMDF K
Sbjct: 6 RINEEIRAREVRVIDADNNQLGIMSVRDALRIAEERQLDLVEVAPQAKPPVCRIMDFGKF 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ +EK+ K + I + KEV+ +IE+ D Q+K +R + G +VK
Sbjct: 66 KYEQSKREKEAKKKQRIIQV-----KEVKLRPRIEEHDYQVKVKHAERFLKDGDKVKATI 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L++L + ++D+ VE P +E K I+
Sbjct: 121 MFRGREIVHTELGQNLLNKLAEDLKDLCTVERQPKLEGKNMIMIL 165
>gi|291450425|ref|ZP_06589815.1| translation initiation factor IF-3 [Streptomyces albus J1074]
gi|421739396|ref|ZP_16177707.1| translation initiation factor IF-3 [Streptomyces sp. SM8]
gi|291353374|gb|EFE80276.1| translation initiation factor IF-3 [Streptomyces albus J1074]
gi|406692195|gb|EKC95905.1| translation initiation factor IF-3 [Streptomyces sp. SM8]
Length = 222
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAATARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + ++D+ +ES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGFRLLQRLAEDVQDLGFIESNPKQDGRNMIMVL-----GPHKK 178
>gi|119026094|ref|YP_909939.1| translation initiation factor IF-3 [Bifidobacterium adolescentis
ATCC 15703]
gi|118765678|dbj|BAF39857.1| translation initiation factor If-3 [Bifidobacterium adolescentis
ATCC 15703]
Length = 306
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 26/221 (11%)
Query: 24 IQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAAPVQA-----QQKKDEKET 78
+ V ++ S T C+A FW + NN F P++ + +
Sbjct: 34 VSVRYVSRSYGFTARCDA---FWHA--------LNNRDFGKLPIKGCSVAWNMRIGVIIS 82
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+
Sbjct: 83 DEPRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDY 142
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY +++K ++ + +S + KE+RF KI+ D ++K V R ++ G +VK
Sbjct: 143 GKYKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFEVKKGHVVRFLNGGDKVK 197
Query: 197 CMALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL +E+ VE P E
Sbjct: 198 VTIMLRG-REQSRPIGGVELLQRLASEVEEYGTVEFAPKQE 237
>gi|153954229|ref|YP_001394994.1| hypothetical protein CKL_1604 [Clostridium kluyveri DSM 555]
gi|219854834|ref|YP_002471956.1| hypothetical protein CKR_1491 [Clostridium kluyveri NBRC 12016]
gi|146347110|gb|EDK33646.1| InfC [Clostridium kluyveri DSM 555]
gi|219568558|dbj|BAH06542.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 170
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 6/162 (3%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQ 142
LN++I + VRLV ++ +++ EAL +AR DLV V +A PPVCKIM++ K Y+
Sbjct: 10 LNEEIRVEKVRLVGEKDSVIINTKEALNIAREKGMDLVMVSPQAKPPVCKIMNYSKFVYE 69
Query: 143 KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPV 202
+ K K K + + L KE+R S IEQ D+++KA+ ++ + KG +VK
Sbjct: 70 QSKKAKLAKKNQKIVEL-----KEIRLSATIEQNDIEIKANNARKFLAKGNKVKVSIRFR 124
Query: 203 GKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +LG L+ + +E+ + VE P +E + I+
Sbjct: 125 GRQNNYTNLGRNVLNVFLSKVEEEASVERAPKLEGNNMFMIL 166
>gi|159037498|ref|YP_001536751.1| translation initiation factor IF-3 [Salinispora arenicola CNS-205]
gi|157916333|gb|ABV97760.1| translation initiation factor IF-3 [Salinispora arenicola CNS-205]
Length = 239
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ VRLV EG +V V AL LA + DLVEV A PPVCK+MDF K
Sbjct: 34 PRVNEQIRAREVRLVGPEGEQVGIVPLERALQLAADVDLDLVEVAPMARPPVCKLMDFGK 93
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ LK ++ + + + KE++ KI+ D + K V R + G +VK
Sbjct: 94 FKYESALKAREARRNQQQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVT 148
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL I ++ VE+ P
Sbjct: 149 IMFRGREQSRPELGYRLLRRLESEISELGYVEAAP 183
>gi|325288436|ref|YP_004264617.1| translation initiation factor 3 (bIF-3) [Syntrophobotulus
glycolicus DSM 8271]
gi|324963837|gb|ADY54616.1| bacterial translation initiation factor 3 (bIF-3) [Syntrophobotulus
glycolicus DSM 8271]
Length = 173
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I A+ VRLV +EG + +VS EA+ +A + DLVE+ A PPVCK+MD+ K
Sbjct: 6 RINDEIRARDVRLVSEEGEQLGIVSIKEAMQIAGEKELDLVEIAPTAKPPVCKLMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K+K+ K + + + KEV+ IE D + KA +R + G +VK
Sbjct: 66 KYEQAKKDKETRKKQKIVEI-----KEVKLRPNIETHDFETKARNAQRFLQDGDKVKVTI 120
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G L RL + + S +E P VE + I+
Sbjct: 121 MFRGREIMHPEQGRVLCIRLAEFVGTDSTIEREPKVEGRNMVMIL 165
>gi|39996616|ref|NP_952567.1| translation initiation factor IF-3 [Geobacter sulfurreducens PCA]
gi|409912040|ref|YP_006890505.1| translation initiation factor IF-3 [Geobacter sulfurreducens KN400]
gi|81702455|sp|Q74D03.1|IF3_GEOSL RecName: Full=Translation initiation factor IF-3
gi|39983497|gb|AAR34890.1| translation initiation factor IF-3 [Geobacter sulfurreducens PCA]
gi|307634866|gb|ADI84352.2| translation initiation factor IF-3 [Geobacter sulfurreducens KN400]
Length = 172
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A+ VR+V + + ++S EALALA + Q DLVEV A PPVC+IMD+ K K
Sbjct: 8 INQAIRAREVRVVGADSEQLGIMSLQEALALAEARQLDLVEVSPTAVPPVCRIMDYGKFK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K ++ K +S + KEV+ K ++ DL K V+R +++G + K +
Sbjct: 68 YQQSKKLQEARKKQSHV-----QVKEVKLRPKTDEHDLMTKIKHVRRFIEEGNKAKVTLV 122
Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L R+ +EDI+VVE P +E + + I+
Sbjct: 123 FRGREITHLEFGSRALDRVAAELEDIAVVEFKPKMEGRSMFMIV 166
>gi|117928476|ref|YP_873027.1| translation initiation factor 3 [Acidothermus cellulolyticus 11B]
gi|117648939|gb|ABK53041.1| bacterial translation initiation factor 3 (bIF-3) [Acidothermus
cellulolyticus 11B]
Length = 225
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 13/176 (7%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I A VRLV G +V V +AL LA DLVEV A PPV K+MD+ K
Sbjct: 33 PRINDQIRAPEVRLVGPNGEQVGIVRIEDALRLAEEADLDLVEVAPMARPPVVKLMDYGK 92
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ +K ++ K ++ + KE++ KI+ D + K + V R +++G +VK
Sbjct: 93 FKYESAVKAREARKHQAQTVI-----KEMKLRPKIDNHDYETKKNHVVRFLNEGDKVKIT 147
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ G+++ ++G L RL + + D+ VE+ P ++ + I+ GP KK
Sbjct: 148 IMFRGREQSRPEMGLRLLQRLAEDVADLGYVEAAPKLDGRNMTMIL-----GPHKK 198
>gi|227548135|ref|ZP_03978184.1| translation initiation factor IF-3 [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079797|gb|EEI17760.1| translation initiation factor IF-3 [Corynebacterium lipophiloflavum
DSM 44291]
Length = 181
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 13/180 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ R+N++I VRLV G +V V +A LA DLVEV A PPVCKIMD
Sbjct: 10 SADTRINERIRVPEVRLVGPSGEQVGIVRTDDARKLAYEADLDLVEVAPNAKPPVCKIMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+++ K ++ K + + KE +F KI++ D K V+R ++KG +V
Sbjct: 70 YGKFKYEQDQKAREARKNQQQTVV-----KEQKFRPKIDEHDYLTKKANVERFLEKGNKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
K + G+++ +LG L RL D I ++ VVES P + + + FGPS+K
Sbjct: 125 KVTIMFRGREQSRPELGYRLLERLADDIGELGVVESRPKQDGRNMTMV-----FGPSRKA 179
>gi|384917915|ref|ZP_10018016.1| translation initiation factor IF-3 [Citreicella sp. 357]
gi|384468219|gb|EIE52663.1| translation initiation factor IF-3 [Citreicella sp. 357]
Length = 225
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+ND+I A +RL+ EG V A+ LA DLVE+ ANPPVCKIMDF
Sbjct: 58 TGPRVNDRIRAPEIRLIGAEGENLGVQQPRRAMELAEQAGLDLVEISPNANPPVCKIMDF 117
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ + +E + A+ K I + KEV+F + D +K V + ++ G +VK
Sbjct: 118 GKFKYETQKRESE-ARKKQKII----EVKEVKFRPGTDIHDYDVKMRNVFKFLEGGDKVK 172
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ ++++ VE+ P +E +Q +I
Sbjct: 173 ITLRFRGREMAHQNLGRELLERVAADVKELGKVENMPKMEGRQMIMMI 220
>gi|399993248|ref|YP_006573488.1| translation initiation factor IF-3 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400754836|ref|YP_006563204.1| translation initiation factor IF-3 [Phaeobacter gallaeciensis 2.10]
gi|398653989|gb|AFO87959.1| translation initiation factor IF-3 [Phaeobacter gallaeciensis 2.10]
gi|398657803|gb|AFO91769.1| translation initiation factor IF-3 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 217
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR N+KI A +RL+ EG V H +A+ +A DLVE+ A PPVCKIMD+
Sbjct: 49 TGPRTNEKIRAPEIRLIGAEGENVGVVHPAKAMQMAEEAGLDLVEISPNATPPVCKIMDY 108
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KEV+F + D ++K V + ++ G +VK
Sbjct: 109 GKFKYEQQKRESE-ARKKQKII----EVKEVKFRPNTDTHDYEVKMRNVYKFLENGDKVK 163
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + I+++ VE+ P +E +Q +I
Sbjct: 164 ITLRFRGREMAHQNLGRELLLRVAEDIKELGKVENMPKMEGRQMIMMI 211
>gi|284799643|ref|ZP_05984465.2| translation initiation factor IF-3 [Neisseria subflava NJ9703]
gi|284797593|gb|EFC52940.1| translation initiation factor IF-3 [Neisseria subflava NJ9703]
Length = 184
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K
Sbjct: 20 RINGEITAKEVRLISESGDQLGVVSVREALAMAEEQDVDLVEISPTAKPPVCKLMDYGKY 79
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ + K++D AK K+ KE++F ++ D Q+K + R + G +VK
Sbjct: 80 KYQ-QAKKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 134
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L R+ + + +++ +ES P +E +Q +I
Sbjct: 135 RFRGREMAHQQLGAQLLERVKEELAEVAQIESFPKMEGRQMVMMI 179
>gi|289772685|ref|ZP_06532063.1| translation initiation factor IF-3 [Streptomyces lividans TK24]
gi|289702884|gb|EFD70313.1| translation initiation factor IF-3 [Streptomyces lividans TK24]
Length = 246
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 31 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 90
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 91 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 145
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + + D+ VES P + + ++ GP KK
Sbjct: 146 KITIMFRGREQSRPELGYRLLQRLAEDVADLGFVESNPKQDGRNMIMVL-----GPHKK 199
>gi|395785349|ref|ZP_10465081.1| translation initiation factor IF-3 [Bartonella tamiae Th239]
gi|423717752|ref|ZP_17691942.1| translation initiation factor IF-3 [Bartonella tamiae Th307]
gi|395424896|gb|EJF91067.1| translation initiation factor IF-3 [Bartonella tamiae Th239]
gi|395427152|gb|EJF93268.1| translation initiation factor IF-3 [Bartonella tamiae Th307]
Length = 180
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 17/185 (9%)
Query: 62 FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDL 119
F A PVQ GPR N+ I V+L+ DEG H +++ +ALA+A DL
Sbjct: 7 FKATPVQ---------KDGPRSNEDIRVPKVQLIDDEGQNHGIIATQDALAMADEAGLDL 57
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
VE+ A PPVCKI+D K KYQ + K + K + + + KE++ I+ D
Sbjct: 58 VEIVPNAEPPVCKIIDLGKLKYQNQKKASEARKKQKTV-----EIKEIKMRPNIDSHDYG 112
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
+K V R ++ G +VK G++ ++LG L+R+ D DI+ VE+ P +E +Q
Sbjct: 113 VKMKAVSRFLEDGDKVKITLRFRGREMAHQELGMKLLNRVKDDTVDIAKVEAEPKLEGRQ 172
Query: 239 AYAII 243
++
Sbjct: 173 MMMVV 177
>gi|418065002|ref|ZP_12702378.1| translation initiation factor IF-3 [Geobacter metallireducens RCH3]
gi|373563275|gb|EHP89476.1| translation initiation factor IF-3 [Geobacter metallireducens RCH3]
Length = 143
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
EALALA S Q DLVEV A PPVC+IMD+ K KYQ+ K ++ K +S + + KE
Sbjct: 5 EALALAESQQLDLVEVSPTAVPPVCRIMDYGKFKYQQSKKLQEAKKKQSHVVV-----KE 59
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGY-LSRLIDLIEDI 225
V+ K ++ DLQ K V+R +++G + K + G++ + G L R+ IEDI
Sbjct: 60 VKLRPKTDEHDLQFKIKHVRRFIEEGNKAKVTLVFRGREITHMEFGVRALERVASEIEDI 119
Query: 226 SVVESGPHVERKQAYAII 243
+V+E P +E + + I+
Sbjct: 120 AVIEMKPKMEGRSMFMIV 137
>gi|21220097|ref|NP_625876.1| translation initiation factor IF-3 [Streptomyces coelicolor A3(2)]
gi|7387791|sp|O88060.1|IF3_STRCO RecName: Full=Translation initiation factor IF-3
gi|3581855|emb|CAA20811.1| putative translation initiation factor IF-3 [Streptomyces
coelicolor A3(2)]
Length = 217
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 2 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 62 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 116
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + + D+ VES P + + ++ GP KK
Sbjct: 117 KITIMFRGREQSRPELGYRLLQRLAEDVADLGFVESNPKQDGRNMIMVL-----GPHKK 170
>gi|297182829|gb|ADI18981.1| translation initiation factor 3 (if-3) [uncultured delta
proteobacterium HF0010_10I05]
Length = 186
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKI 133
K+ R+ND+I A +RL+ EG +V ++ +AL A+S DLVEV KA+PPVC++
Sbjct: 15 KQDDSIRVNDQITAPRIRLIDGEGGQVGVITVADALTRAQSDGLDLVEVSPKADPPVCRL 74
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
MD+ K KYQ+ K + AK + KEV+ KIE DLQ K R ++ G
Sbjct: 75 MDYGKFKYQQS-KRQHAAKVHQKVI----HVKEVKLRPKIEDHDLQFKVRNALRFLEDGD 129
Query: 194 RVKCMALPVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAII 243
+VK + +G++ +DLG L R ++I + +VE E + + I+
Sbjct: 130 KVKVNVVFMGREMAHKDLGLVLIERFQNMIGENGIVEQPVRNEGRSMFMIL 180
>gi|335038730|ref|ZP_08531943.1| Translation initiation factor IF-3 [Caldalkalibacillus thermarum
TA2.A1]
gi|334181370|gb|EGL83922.1| Translation initiation factor IF-3 [Caldalkalibacillus thermarum
TA2.A1]
Length = 208
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G++V V +AL +AR DLV V +A PPVC+IMD+ K K
Sbjct: 44 VNENIRAREVRLIDVDGNQVGIVPLKKALQMARDANLDLVNVAPQAKPPVCRIMDYGKFK 103
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ +E++ K + I + KEVRF+ IE+ D K V+R + KG +VKC
Sbjct: 104 FEQQKREREARKKQKVI-----NVKEVRFTPNIEEHDYNTKMRNVQRFLSKGDKVKCTIR 158
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ +LG L RL + ++ VVE P ++
Sbjct: 159 FRGRQITHAELGRELLERLAQDVAEVGVVEKKPSMD 194
>gi|357414416|ref|YP_004926152.1| translation initiation factor IF-3 [Streptomyces flavogriseus ATCC
33331]
gi|320011785|gb|ADW06635.1| translation initiation factor IF-3 [Streptomyces flavogriseus ATCC
33331]
Length = 249
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 31 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAATARPPVCKLMD 90
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 91 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 145
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +E++ +ES P + + ++ GP KK
Sbjct: 146 KITIMFRGREQSRPELGFRLLQRLASDVEELGFIESNPKQDGRNMIMVL-----GPHKK 199
>gi|326331229|ref|ZP_08197523.1| translation initiation factor IF-3 [Nocardioidaceae bacterium
Broad-1]
gi|325950999|gb|EGD43045.1| translation initiation factor IF-3 [Nocardioidaceae bacterium
Broad-1]
Length = 271
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G V V +AL LA+ DLVE+ + PPVCK+MD+ K
Sbjct: 50 RINDRIRVPEVRLVGPNGETVGIVPTPDALRLAQEADLDLVEIAPQGKPPVCKLMDYGKF 109
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ + ++++ + KE++ KI++ D + K V R ++ G +VK
Sbjct: 110 KYENAQKAREARRNQTNVII-----KEMKLRPKIDKHDYETKKGHVVRFLNAGDKVKITI 164
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKK 258
+ G+++ +LG L +L D ++D+ VES P + + ++ GP KK K
Sbjct: 165 MFRGREQHRPELGFRLLQQLADDVQDLGFVESSPKQDGRNMIMVL-----GPHKKKADAK 219
Query: 259 LKA 261
++A
Sbjct: 220 VEA 222
>gi|340348244|ref|ZP_08671334.1| translation initiation factor IF3 [Prevotella dentalis DSM 3688]
gi|433653071|ref|YP_007296925.1| translation initiation factor IF-3 [Prevotella dentalis DSM 3688]
gi|339607515|gb|EGQ12449.1| translation initiation factor IF3 [Prevotella dentalis DSM 3688]
gi|433303604|gb|AGB29419.1| translation initiation factor IF-3 [Prevotella dentalis DSM 3688]
Length = 228
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 12/176 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
R+N +I+A+ VR+V D G +V+ +AL LAR DLVE+ A PPVC+I+D+ K Y
Sbjct: 11 RVNGQIHAREVRVVSDNGAEVMPTRQALDLARQQGVDLVEISPNAQPPVCRIIDYSKFLY 70
Query: 142 QKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALP 201
Q++ ++K+ + + + + KE+RF + + D Q K K +D+G +V+
Sbjct: 71 QQKKRQKEMKQKQVKV-----EVKEIRFGPQTDDHDYQFKLKHAKEFLDEGNKVRAYVFF 125
Query: 202 VGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G+ KE+ E L L R + +E+ + VE P +E K+ + + K G +K+
Sbjct: 126 RGRSILFKEQGEVL---LLRFANDLEEYAKVEQLPKLEGKKMFLFLAPKKVGVTKQ 178
>gi|403251830|ref|ZP_10918153.1| translation initiation factor 3 (IF-3) [actinobacterium SCGC
AAA027-L06]
gi|402914872|gb|EJX35872.1| translation initiation factor 3 (IF-3) [actinobacterium SCGC
AAA027-L06]
Length = 200
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 13/181 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRL+ +G + V + +AL L+ + DLVE+ ANPPVCKIMD
Sbjct: 16 STEPRINDRIRVPEVRLIGYDGEQLGVTAIDKALKLSEEIGLDLVEISPDANPPVCKIMD 75
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K KY+ K ++ + ++ I + KE+R IE D + K + ++R + G +V
Sbjct: 76 FGKYKYEIAQKAREARQNQTHIVV-----KEMRLRPNIEPHDYETKRNHIERFLTGGDKV 130
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
K G+++ ++G L +L + + ++S+VE P E + ++ GP+KK
Sbjct: 131 KVTIQFRGREQSRPEIGYRLLQKLAEELIEVSIVEFAPKQEGRNMTMVL-----GPAKKP 185
Query: 255 G 255
G
Sbjct: 186 G 186
>gi|320093955|ref|ZP_08025784.1| translation initiation factor IF3 [Actinomyces sp. oral taxon 178
str. F0338]
gi|422012431|ref|ZP_16359121.1| translation initiation factor IF-3 [Actinomyces georgiae F0490]
gi|319979113|gb|EFW10627.1| translation initiation factor IF3 [Actinomyces sp. oral taxon 178
str. F0338]
gi|394756488|gb|EJF39574.1| translation initiation factor IF-3 [Actinomyces georgiae F0490]
Length = 222
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
S R+N++I VRLV G +V V +AL LA DLVEV A PPV K+MD
Sbjct: 11 ISETRINERIRVPEVRLVGPGGEQVGVVRVEDALRLAEEAGLDLVEVAPNAKPPVAKLMD 70
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K +D + +++ L KE+RF KI+ D +K V+R + G +V
Sbjct: 71 YGKYKYEAAQKARDARRNQANTQL-----KEIRFRLKIDDHDFAVKKGHVERFLSAGDKV 125
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPH 233
K M + G+++ + G L RL D I D++ VES P
Sbjct: 126 KVMIMFRGREQSRPEAGVRLLRRLADEIGDLATVESMPR 164
>gi|159901151|ref|YP_001547398.1| translation initiation factor IF-3 [Herpetosiphon aurantiacus DSM
785]
gi|159894190|gb|ABX07270.1| translation initiation factor IF-3 [Herpetosiphon aurantiacus DSM
785]
Length = 219
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 98/165 (59%), Gaps = 9/165 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VRL+ + G++V ++ +AL +A DLVEV A+PPVC++MD+ K
Sbjct: 18 RINNRIRVREVRLIDENGNQVGIITTRDALDMAHDRDLDLVEVAPNASPPVCRLMDYGKY 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++ KE++ K + + L KE+R + + DLQ+K + +R +++G++VK
Sbjct: 78 RYEQTKKEREARKNQKQVEL-----KEIRMQPRTDTHDLQVKVNNARRFLEEGHKVKFSV 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L ++ + + D V+E P +E +AY++I
Sbjct: 133 RFRGREITHPEIGREMLEQIAEDLRDHGVLEQKPTLE-GRAYSLI 176
>gi|14194834|sp|Q9K867.3|IF3_BACHD RecName: Full=Translation initiation factor IF-3
Length = 171
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + V S+ EAL +AR++ DLV V A PPVC+IMD+ K +
Sbjct: 7 VNEGIRAREVRLIGANGDQIGVKSKAEALDMARNVNLDLVCVAPNAKPPVCRIMDYGKYR 66
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K+K+ K + I + KEVR S IE D K ++ + KG +VK
Sbjct: 67 YEQQKKDKEARKKQKTINV-----KEVRLSPTIEDHDFNTKLRNARKFLSKGDKVKAAIR 121
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++G L RL EDI++VE+ P +E + + ++
Sbjct: 122 FRGRAITHSEIGRNVLERLAKECEDIAIVEAKPKMEGRSMFLVL 165
>gi|359475012|ref|XP_003631568.1| PREDICTED: uncharacterized protein LOC100852768 [Vitis vinifera]
Length = 355
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 19/212 (8%)
Query: 302 IEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSH- 360
+E WSV ++NDD ++VFD + A SN T K NA E++S +I+ S+ H
Sbjct: 8 LEDNKATWSVFDANDDFDKVFDFTNDAN--PSNSTDKQTNAKLETSSSLENINLSDIMHG 65
Query: 361 PKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQF-PQKPIDNLGSGTRESFRSEPQF 419
P+P + +R +++ S+ P T NRY +SE +N+F P +DN G G S R PQF
Sbjct: 66 PRPVLDSTRTNSVPSSLTEPPPETLNRYRKSEPRNRFMPTTSMDNKGPGATNSLRLGPQF 125
Query: 420 PSQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSDVP--------NTRASS 471
+Q +Q + N+SPS G + GT+AS FRN +LP ++P ++ S
Sbjct: 126 LNQGKQARS--DTNSSPSTGRTRQDGTDASVFRNLKLP---LHEIPMQEPSRPPSSPRPS 180
Query: 472 YGIFSNPTANAPTGQGMAAD--RTKEGIPTQG 501
YG FS A AP +A+ R++ +P QG
Sbjct: 181 YGDFSALKAEAPGKLDPSANSARSEPRLPNQG 212
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 23/142 (16%)
Query: 412 SFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSDVP------ 465
S RSEP+ P+Q +Q ++N PS G K + + S RNS+ P ++D P
Sbjct: 201 SARSEPRLPNQGKQSWS--DLNFVPSTGGTKQVPADTSVSRNSKPP---TNDGPKPEQSH 255
Query: 466 ----NTRASSYGIFSNPTANAPTGQGMAAD--RTKEGIPTQG----TAGVRPNQNSPGLK 515
++ SSYGIFS A AP QGMA++ R KEG P++ +AG N N P K
Sbjct: 256 PVPPSSPTSSYGIFSASKATAPGKQGMASEVNRNKEGNPSESARNPSAGGVFNANFPS-K 314
Query: 516 SDGSQTPGPD-NGQRKFGIFSR 536
SDGSQ G + +GQ +G+FSR
Sbjct: 315 SDGSQRGGVNQDGQGGWGMFSR 336
>gi|295696883|ref|YP_003590121.1| translation initiation factor IF-3 [Kyrpidia tusciae DSM 2912]
gi|295412485|gb|ADG06977.1| translation initiation factor IF-3 [Kyrpidia tusciae DSM 2912]
Length = 174
Score = 83.6 bits (205), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I A+ VRL+ +G + +VS +AL +A DLV V A PPVC+IMD+ K
Sbjct: 8 QVNEQIRAREVRLIDVDGEQLGIVSLRDALRIAAEKNLDLVNVAPTAKPPVCRIMDYGKY 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ ++K+ + + ++L KEVR + IE D Q K V R +++G +VK
Sbjct: 68 KYEQSKRDKEARRNQKIVSL-----KEVRLTPNIEDHDFQTKLRAVVRFLEQGDKVKATV 122
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +G G L R+ +E++ VVE P +E + I+
Sbjct: 123 RFRGREITHTRIGQGILERMAKEVENLCVVERPPKLEGRNMIMIL 167
>gi|15615702|ref|NP_244006.1| translation initiation factor IF-3 [Bacillus halodurans C-125]
gi|10175762|dbj|BAB06859.1| translation initiation factor IF-3 [Bacillus halodurans C-125]
Length = 190
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + V S+ EAL +AR++ DLV V A PPVC+IMD+ K +
Sbjct: 26 VNEGIRAREVRLIGANGDQIGVKSKAEALDMARNVNLDLVCVAPNAKPPVCRIMDYGKYR 85
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K+K+ K + I + KEVR S IE D K ++ + KG +VK
Sbjct: 86 YEQQKKDKEARKKQKTINV-----KEVRLSPTIEDHDFNTKLRNARKFLSKGDKVKAAIR 140
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++G L RL EDI++VE+ P +E + + ++
Sbjct: 141 FRGRAITHSEIGRNVLERLAKECEDIAIVEAKPKMEGRSMFLVL 184
>gi|392947105|ref|ZP_10312747.1| translation initiation factor IF-3 [Frankia sp. QA3]
gi|392290399|gb|EIV96423.1| translation initiation factor IF-3 [Frankia sp. QA3]
Length = 298
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 8/167 (4%)
Query: 69 AQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKA 126
A++ +E ++ R+ND+I VRLV EG ++ V+ EA+ +A+ DLVEV A
Sbjct: 108 ARRATEEHISTESRINDRIRVPEVRLVGAEGEQIGIVAIGEAMRMAQEADLDLVEVAPTA 167
Query: 127 NPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVK 186
PPVCK+MDF K KY+ + K ++ K + + KE++ KI+ D + K V
Sbjct: 168 RPPVCKLMDFGKFKYESDQKRREARKNQVQTVI-----KEMKLRPKIDPHDYETKKGHVV 222
Query: 187 RLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
R + G +VK + G+++ +LG L RL + D+ VE+ P
Sbjct: 223 RFLRAGDKVKITIMFRGREQSRPELGIRLLQRLSADVADLGYVEAQP 269
>gi|405983056|ref|ZP_11041367.1| translation initiation factor IF-3 [Slackia piriformis YIT 12062]
gi|404389765|gb|EJZ84841.1| translation initiation factor IF-3 [Slackia piriformis YIT 12062]
Length = 185
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PRLND+I + RL+ +G + + S EA +A DLVE+ A PPVC+IMD+ K
Sbjct: 9 PRLNDEIRTRECRLIGYDGSQMGIFSTREAQRIADEQGLDLVEIAPNAEPPVCRIMDYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY + +K K K ++ I + KE++F KI+ D K V R ++ G +VK
Sbjct: 69 FKYDQAIKAKQARKNQTKI-----EIKEMKFRPKIDVGDYTTKKKHVLRFLEGGAKVKIT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G L RL D ++D++V+E+ P +E + + +I
Sbjct: 124 IMFRGREMAHPEQGLSILERLADDLKDVAVIENAPKMEGRNMHMLI 169
>gi|408676914|ref|YP_006876741.1| Translation initiation factor 3 [Streptomyces venezuelae ATCC
10712]
gi|328881243|emb|CCA54482.1| Translation initiation factor 3 [Streptomyces venezuelae ATCC
10712]
Length = 257
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 42 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 101
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 102 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 156
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +E++ +ES P + + ++ GP KK
Sbjct: 157 KITIMFRGREQSRPELGFRLLQRLASDVEELGFIESNPKQDGRNMIMVL-----GPHKK 210
>gi|386721195|ref|YP_006187520.1| protein InfC [Paenibacillus mucilaginosus K02]
gi|384088319|gb|AFH59755.1| InfC [Paenibacillus mucilaginosus K02]
Length = 166
Score = 83.2 bits (204), Expect = 3e-13, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VR++ +G + ++ EAL +A+ L DLV V A PPVC++MD+ K +
Sbjct: 2 INEEIRAREVRMIGADGEQLGIMPIREALQMAQDLNLDLVNVAPTAKPPVCRVMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ + KEK+ K + + D KE+R S I++ D Q K V++ ++ G +VK
Sbjct: 62 YETQKKEKEARKNQKIV-----DLKEIRLSATIDEHDFQTKLRNVEKFLNDGDKVKLSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +G L R+ +E++ VVE P +E + I+
Sbjct: 117 FRGREIAHASIGQKVLERMAATVEELCVVERRPKLEGRSMIMIL 160
>gi|379735857|ref|YP_005329363.1| translation initiation factor IF-3 [Blastococcus saxobsidens DD2]
gi|378783664|emb|CCG03332.1| Translation initiation factor IF-3 [Blastococcus saxobsidens DD2]
Length = 212
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRLV EG +V VS EAL LA+ + DLVEV A PPV K+MD+ K
Sbjct: 18 PRINDRIRVPEVRLVGPEGEQVGIVSIGEALRLAQDSELDLVEVAPMARPPVAKLMDYGK 77
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ K ++ A+ +T+ KE+R KI+ D + K V+R + G +VK
Sbjct: 78 FKYESAQKARE-ARRNQALTV----IKEMRLRLKIDPHDYETKKGHVERFLKSGDKVKIT 132
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G+++ ++G L RL + ++ VVES P + + +I
Sbjct: 133 VMFRGREQSRPEMGYRLLQRLAADVSELGVVESNPKQDGRNMVMVI 178
>gi|374604778|ref|ZP_09677730.1| translation initiation factor IF-3 [Paenibacillus dendritiformis
C454]
gi|374389608|gb|EHQ60978.1| translation initiation factor IF-3 [Paenibacillus dendritiformis
C454]
Length = 165
Score = 83.2 bits (204), Expect = 3e-13, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG ++ + EAL +A DLV V +A PPVC+IMD+ K +
Sbjct: 2 VNEEIRAKEVRLVGPEGEQIGIKPFREALQMAYDANLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F I++ D Q K V + + +G +VKC
Sbjct: 62 YEQQKKEKEARKNQKTV-----DIKEVWFRANIDEHDFQTKLRNVLKFLREGDKVKCSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ D+G L R++ ++ +VE P +E + I+
Sbjct: 117 FRGREIAHADIGKKVLDRVLVEANELCIVERVPKLEGRSMIMIL 160
>gi|340349415|ref|ZP_08672433.1| translation initiation factor IF3 [Prevotella nigrescens ATCC
33563]
gi|339611622|gb|EGQ16443.1| translation initiation factor IF3 [Prevotella nigrescens ATCC
33563]
Length = 232
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 22/190 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I+A+ VR+V + +V+S +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKMKFQYRVNEQIHAREVRVVSEGNAEVMSTRQALDIARKEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K D KE+RF + ++ D Q K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQV----------KQDIKEIRFGPQTDEHDYQFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKK 253
K G +KK
Sbjct: 169 SPKKAGITKK 178
>gi|445120951|ref|ZP_21379383.1| translation initiation factor IF-3 [Prevotella nigrescens F0103]
gi|444839210|gb|ELX66290.1| translation initiation factor IF-3 [Prevotella nigrescens F0103]
Length = 227
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 29/211 (13%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK--- 138
R+N++I+A+ VR+V + +V+S +AL +AR DLVE+ A PPVC+I+D+ K
Sbjct: 6 RVNEQIHAREVRVVSEGNAEVMSTRQALDIARKEGVDLVEISPNAQPPVCRIIDYSKFLY 65
Query: 139 --EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
+K+QKE+K+K K D KE+RF + ++ D Q K + +++G +V+
Sbjct: 66 QQKKHQKEMKQKQ----------VKQDIKEIRFGPQTDEHDYQFKLKHAQEFLNEGNKVR 115
Query: 197 CMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
G+ KE+ E L L R + +E+++ VE P +E K+ + + P K
Sbjct: 116 AYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL-----SPKK 167
Query: 253 KGGLKKLKAVGDTSGVSKAA--TPSSTIERS 281
G KK + D + AA +S IE S
Sbjct: 168 AGITKKSQQRRDREEAADAAKKIETSKIENS 198
>gi|210632539|ref|ZP_03297449.1| hypothetical protein COLSTE_01352 [Collinsella stercoris DSM 13279]
gi|210159486|gb|EEA90457.1| translation initiation factor IF-3 [Collinsella stercoris DSM
13279]
Length = 200
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 8/177 (4%)
Query: 74 DEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVC 131
D ++ R+ND+I A VRL+ +G ++ + H+A +A DLVE+ A+PPVC
Sbjct: 15 DIAKSDDTRINDEIRAPRVRLIGVDGSQLGLFATHDAQRIADDQNLDLVEIAPNADPPVC 74
Query: 132 KIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDK 191
K+MD+ K KYQ+ +K K K +S + + KE++F KI+ D + K V R + K
Sbjct: 75 KVMDYGKFKYQQAMKAKQARKNQSKV-----EVKEMKFRPKIDVGDYETKKGHVLRFLKK 129
Query: 192 GYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G RVK + G++ + G L RL + ++ + VES P +E + ++ +K
Sbjct: 130 GARVKITIMFRGREMAHPEQGLNVLERLAEDLKPFATVESQPKLEGRNMLMLLAPIK 186
>gi|302533486|ref|ZP_07285828.1| translation initiation factor IF-3 [Streptomyces sp. C]
gi|302442381|gb|EFL14197.1| translation initiation factor IF-3 [Streptomyces sp. C]
Length = 234
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 STEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +E++ +ES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGYRLLQRLASDVEELGFIESNPKQDGRNMIMVL-----GPHKK 178
>gi|239827996|ref|YP_002950620.1| translation initiation factor IF-3 [Geobacillus sp. WCH70]
gi|239808289|gb|ACS25354.1| translation initiation factor IF-3 [Geobacillus sp. WCH70]
Length = 190
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + + SR EAL +A L DLV V A PPVC+IMD+ K +
Sbjct: 26 INENIRAREVRLIDPKGEQLGIKSRQEALEIAARLNLDLVLVAPNAKPPVCRIMDYGKFR 85
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 86 FEQQKKEKEARKKQKVINV-----KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 140
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + DI+VVE+ P ++ + + ++
Sbjct: 141 FKGRAITHKEIGQRVLERFSEACSDIAVVETAPKMDGRNMFLVL 184
>gi|336234381|ref|YP_004586997.1| translation initiation factor IF-3 [Geobacillus thermoglucosidasius
C56-YS93]
gi|335361236|gb|AEH46916.1| Translation initiation factor IF-3 [Geobacillus thermoglucosidasius
C56-YS93]
Length = 181
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + SR EAL +A L DLV V A PPVC+IMD+ K +
Sbjct: 17 INENIRAREVRLIDPNGEQLGIKSRQEALEIAARLNLDLVLVAPNAKPPVCRIMDYGKFR 76
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 77 FEQQKKEKEARKKQKVI-----NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 131
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + DI VVE+ P ++ + + ++
Sbjct: 132 FKGRAITHKEIGQRVLERFSEACSDIGVVETAPKMDGRSMFLVL 175
>gi|339479439|gb|ABE95907.1| Bacterial Protein Translation Initiation Factor 3 (IF-3)
[Bifidobacterium breve UCC2003]
Length = 266
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 10/176 (5%)
Query: 64 AAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVE 121
A P + +Q+ + PR+ND+I VRL+ +G +V ++ AL LA+ DLVE
Sbjct: 18 ALPKELKQRIGVIISDEPRINDEIRVPQVRLIGPKGEQVGVIATTVALNLAKEANLDLVE 77
Query: 122 VDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMK 181
V A PPV K++D+ K KY +++K ++ + +S + KE+RF KI+ D +K
Sbjct: 78 VAPNAKPPVAKLIDYGKFKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFDVK 132
Query: 182 ADTVKRLMDKGYRVKCMALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
V R ++ G +VK + G +E + +GG L RL D +E+ VES P E
Sbjct: 133 KGHVTRFLNGGDKVKVTIMLRG-REISRPIGGVELLQRLADDVEEFGTVESKPKQE 187
>gi|291457666|ref|ZP_06597056.1| translation initiation factor IF-3 [Bifidobacterium breve DSM 20213
= JCM 1192]
gi|291380719|gb|EFE88237.1| translation initiation factor IF-3 [Bifidobacterium breve DSM 20213
= JCM 1192]
Length = 266
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ +G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 35 PRINDEIRVPQVRLIGPKGEQVGVIATTVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 94
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D +K V R ++ G +VK
Sbjct: 95 FKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFDVKKGHVTRFLNGGDKVKVT 149
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E + +GG L RL D +E+ VES P E
Sbjct: 150 IMLRG-REISRPIGGVELLQRLADDVEEFGTVESKPKQE 187
>gi|384196775|ref|YP_005582519.1| translation initiation factor IF-3 [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333109981|gb|AEF26997.1| translation initiation factor IF-3 [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 266
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 10/176 (5%)
Query: 64 AAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVE 121
A P + +Q+ + PR+ND+I VRL+ +G +V ++ AL LA+ DLVE
Sbjct: 18 ALPKELKQRIGVIISDEPRINDEIRVPQVRLIGPKGEQVGVIATTVALNLAKEANLDLVE 77
Query: 122 VDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMK 181
V A PPV K++D+ K KY +++K ++ + +S + KE+RF KI+ D +K
Sbjct: 78 VAPTAKPPVAKLIDYGKFKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFDVK 132
Query: 182 ADTVKRLMDKGYRVKCMALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
V R ++ G +VK + G +E + +GG L RL D +E+ VES P E
Sbjct: 133 KGHVTRFLNGGDKVKVTIMLRG-REISRPIGGVELLQRLADDVEEFGTVESKPKQE 187
>gi|429203619|ref|ZP_19194945.1| translation initiation factor IF-3 [Streptomyces ipomoeae 91-03]
gi|428660855|gb|EKX60385.1| translation initiation factor IF-3 [Streptomyces ipomoeae 91-03]
Length = 241
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 26 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 85
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 86 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 140
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + ++++ VES P + + ++ GP KK
Sbjct: 141 KITIMFRGREQSRPELGYRLLQRLAEDVQELGFVESNPKQDGRNMIMVL-----GPHKK 194
>gi|345023441|ref|ZP_08787054.1| translation initiation factor IF-3 [Ornithinibacillus scapharcae
TW25]
Length = 168
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI A+ VRL+ G + V SR EAL LA+ DLV V A PPV +IM++ K +
Sbjct: 3 VNEKIRAKEVRLIDSNGDQLGVKSRQEALELAQKQNLDLVLVAPTAKPPVARIMNYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + I + KEVRF+ I D + K ++ ++KG +VK
Sbjct: 63 YEQQKKEKEARKNQKII-----NVKEVRFTPGIGAHDFETKLKNARKFLEKGDKVKAAVR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L R + ++DI+ +ES P +E + + ++
Sbjct: 118 FRGRAITHKELGQEVLDRFAEAVKDIATIESKPKMEGRNMFMML 161
>gi|319786722|ref|YP_004146197.1| translation initiation factor IF-3 [Pseudoxanthomonas suwonensis
11-1]
gi|317465234|gb|ADV26966.1| translation initiation factor IF-3 [Pseudoxanthomonas suwonensis
11-1]
Length = 189
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 10/166 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V+SR EAL LA DLVE+ A+PPVCK+MDF K
Sbjct: 25 RKNQEIRVPRVRVIGSDGEMIGVLSRDEALRLAEEEGLDLVEIQPNADPPVCKVMDFGKF 84
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++ + K+ + AK KS ++ + KEV+F ++ D Q+K ++R +++G +VK
Sbjct: 85 KFEMQ-KKANEAKKKS----RQVEIKEVKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNI 139
Query: 200 LPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I DL EDI V+ES P +E +Q +I
Sbjct: 140 RFRGREMSHQELGRQMAARIEGDLGEDI-VIESRPRLEGRQMVMMI 184
>gi|282877700|ref|ZP_06286515.1| translation initiation factor IF-3 [Prevotella buccalis ATCC 35310]
gi|281300272|gb|EFA92626.1| translation initiation factor IF-3 [Prevotella buccalis ATCC 35310]
Length = 232
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K ++ R+N++I + VR+V D+G +V+ +AL LAR DLVE+ KA PPVC+
Sbjct: 2 KNDKLSNQYRVNEQIRVREVRVVGDDGSQVMPTKKALDLARQQGVDLVEISPKAQPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
++D+ K YQ +K RAK + K + KE+RF + ++ D Q K + +++G
Sbjct: 62 LVDYSKFLYQ----QKKRAKEMKQKQV-KVEVKEIRFGPQTDEHDYQFKLKHAQGFLNEG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+V+ G+ KE+ E L L R + +E+ VE P +E K+ + + K
Sbjct: 117 NKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPKLEGKKMFLYLAPKKV 173
Query: 249 GPSKK 253
G KK
Sbjct: 174 GVEKK 178
>gi|317124675|ref|YP_004098787.1| translation initiation factor 3 (bIF-3) [Intrasporangium calvum DSM
43043]
gi|315588763|gb|ADU48060.1| bacterial translation initiation factor 3 (bIF-3) [Intrasporangium
calvum DSM 43043]
Length = 209
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
S PR+N++I VRLV G +V V +AL LA DLVEV A PPV K+MD
Sbjct: 1 MSEPRINERIRVPEVRLVGPNGEQVGIVRVEDALRLAEEANLDLVEVAPMAKPPVAKLMD 60
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K KY+ +K ++ K + + + KE++ KI+ D K V+R + G +V
Sbjct: 61 FGKFKYEAAMKAREARKNQVNTVI-----KEIKLRPKIDPHDYGTKKGHVERFLKAGDKV 115
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL D I ++ VES P + + +I GP+KK
Sbjct: 116 KVTIMFRGREQSRPELGRRLLERLADDIAELGYVESAPKQDGRNMIMVI-----GPTKK 169
>gi|331697626|ref|YP_004333865.1| translation initiation factor IF-3 [Pseudonocardia dioxanivorans
CB1190]
gi|326952315|gb|AEA26012.1| Translation initiation factor IF-3 [Pseudonocardia dioxanivorans
CB1190]
Length = 250
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G +V V +AL LA+ + DLVEV +A PPVCK+MDF K
Sbjct: 54 RINDRIRVPEVRLVGPNGEQVGIVRIEDALRLAQEAELDLVEVAAQARPPVCKLMDFGKF 113
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ ++ +T+ KE + KI+ D + K V R ++ G +VK
Sbjct: 114 KYESAQKARE-SRRNQQLTV----IKEQKLRPKIDTHDYETKKRNVVRFLEGGNKVKVTI 168
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL + + D+ VVE+ P
Sbjct: 169 MFRGREQSRPELGFRLLQRLAEDVVDLGVVEAAP 202
>gi|23099607|ref|NP_693073.1| translation initiation factor IF-3 [Oceanobacillus iheyensis
HTE831]
gi|22777837|dbj|BAC14108.1| translation initiation factor IF-3 [Oceanobacillus iheyensis
HTE831]
Length = 168
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI A+ VRL+ G + V SR EAL +A + DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEKIRAREVRLIDSNGDQLGVKSRQEALDIATTRNLDLVLVAPNAKPPVCRIMDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVRF+ I D + K ++ ++KG +VK
Sbjct: 63 FEQQKKEKEARKKQKVI-----NVKEVRFTPGIGDHDFETKLKNARKFLEKGDKVKAAVR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L R + ++D+ +E+ P +E + + ++
Sbjct: 118 FRGRAITHKELGREVLDRFAEEVKDLGTIETKPKMEGRNMFMMV 161
>gi|126726282|ref|ZP_01742123.1| translation initiation factor IF-3 [Rhodobacterales bacterium
HTCC2150]
gi|126704145|gb|EBA03237.1| translation initiation factor IF-3 [Rhodobacteraceae bacterium
HTCC2150]
Length = 171
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+N++IN+ +RL+ +G VVS A+ A DLVE+ ANPPVCKIMDF
Sbjct: 4 TGPRVNERINSPEIRLIGADGENGGVVSPRAAMEQAEQAGLDLVEISPNANPPVCKIMDF 63
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KE++F ++ D +K V + ++ G +VK
Sbjct: 64 GKYKYEQQKRESE-ARKKQKII----EIKEIKFRPNTDKHDYGVKMRNVFKFLENGDKVK 118
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + ++ +E+ P +E +Q +I
Sbjct: 119 ITMRFRGREMAHQNLGRELLERVAADVVELGKIENMPKMEGRQMIMMI 166
>gi|239621209|ref|ZP_04664240.1| LOW QUALITY PROTEIN: translation initiation factor If-3
[Bifidobacterium longum subsp. infantis CCUG 52486]
gi|239515670|gb|EEQ55537.1| LOW QUALITY PROTEIN: translation initiation factor If-3
[Bifidobacterium longum subsp. infantis CCUG 52486]
Length = 241
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ +G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 10 PRINDEIRVPQVRLIGPKGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 69
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D +K V R ++ G +VK
Sbjct: 70 FKYNEKIKAREARRNQS-----TAEIKEIRFRLKIDDHDFDVKKGHVTRFLNGGDKVKVT 124
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E + +GG L RL D +E+ VES P E
Sbjct: 125 IMLRG-REISRPIGGVELLQRLADDVEEYGTVESKPKQE 162
>gi|384108757|ref|ZP_10009647.1| translation initiation factor IF-3 [Treponema sp. JC4]
gi|383869728|gb|EID85337.1| translation initiation factor IF-3 [Treponema sp. JC4]
Length = 179
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
G R+N+ I + VRL+ DEG++ +V ++AL +AR DLVEV ANPPVCKI+D+
Sbjct: 12 GQRINEMIRVREVRLIDDEGNQLGIVPTNQALNMARDKDLDLVEVSPNANPPVCKILDYG 71
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K ++++E K +D K + + L KE+R KI DL KA ++ +D+G +VK
Sbjct: 72 KYRFEQEKKLRDSKKNQKVLKL-----KEIRMQPKIGSGDLDTKAKHIQEFLDEGDKVKV 126
Query: 198 MALPVGKKEETEDLG 212
G++ +LG
Sbjct: 127 TIRFRGRELAHTELG 141
>gi|121535636|ref|ZP_01667442.1| translation initiation factor IF-3 [Thermosinus carboxydivorans
Nor1]
gi|121305806|gb|EAX46742.1| translation initiation factor IF-3 [Thermosinus carboxydivorans
Nor1]
Length = 167
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 96/165 (58%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VR++ G + ++ +AL LA Q DLVEV +A PPVC+IMDF K
Sbjct: 2 RINEEIRAREVRVISSTGEQLGIMPLRDALRLAGEQQLDLVEVAPQAKPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+++ ++K+ K + IT+ KEV+ IE+ D +K +R ++ G +VK
Sbjct: 62 KYEQQKRDKEAKKKQKIITV-----KEVKIRPNIEEHDFNVKIKHAQRFLEDGDKVKVTI 116
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+++ + +++I+ VE P +E K I+
Sbjct: 117 MFRGRELSHPELGKQVLTKMANELKNIAAVEREPKLEGKNMIMIL 161
>gi|337745031|ref|YP_004639193.1| protein InfC [Paenibacillus mucilaginosus KNP414]
gi|336296220|gb|AEI39323.1| InfC [Paenibacillus mucilaginosus KNP414]
Length = 166
Score = 82.8 bits (203), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VR++ +G + ++ EAL +A+ L DLV V A PPVC++MD+ K +
Sbjct: 2 INEEIRAREVRMIGADGEQLGIMPIREALQMAQDLNLDLVNVAPTAKPPVCRVMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ + KEK+ K + + D KE+R S I++ D Q K V++ + G +VK
Sbjct: 62 YETQKKEKEARKNQKIV-----DLKEIRLSATIDEHDFQTKLRNVEKFLSDGDKVKLSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +G L R+ +E++ VVE P +E + I+
Sbjct: 117 FRGREIAHASIGQKVLERMAATVEELCVVERRPKLEGRSMIMIL 160
>gi|417942432|ref|ZP_12585703.1| Translation initiation factor IF-3 [Bifidobacterium breve CECT
7263]
gi|376167081|gb|EHS85943.1| Translation initiation factor IF-3 [Bifidobacterium breve CECT
7263]
Length = 266
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 10/176 (5%)
Query: 64 AAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVE 121
A P + +Q+ + PR+ND+I VRL+ +G +V ++ AL LA+ DLVE
Sbjct: 18 ALPKELKQRIGVIISEEPRINDEIRVPQVRLIGPKGEQVGVIATTVALNLAKEANLDLVE 77
Query: 122 VDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMK 181
V A PPV K++D+ K KY +++K ++ + +S + KE+RF KI+ D +K
Sbjct: 78 VAPNAKPPVAKLIDYGKFKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFDVK 132
Query: 182 ADTVKRLMDKGYRVKCMALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
V R ++ G +VK + G +E + +GG L RL D +E+ VES P E
Sbjct: 133 KGHVTRFLNGGDKVKVTIMLRG-REISRPIGGVELLQRLADDVEEFGTVESKPKQE 187
>gi|288928014|ref|ZP_06421861.1| translation initiation factor IF-3 [Prevotella sp. oral taxon 317
str. F0108]
gi|288330848|gb|EFC69432.1| translation initiation factor IF-3 [Prevotella sp. oral taxon 317
str. F0108]
Length = 223
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 17/190 (8%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K+E+ + R+N++I A+ VR+V + G V+ +AL +ARS DLVE+ A PPVC+
Sbjct: 2 KNERIKNQYRVNEQIRAKEVRIVNEGGSTVMPTRQALDMARSQGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
I+D+ K YQ++ K KAK K + KE+RF + ++ D K K +D G
Sbjct: 62 IIDYSKFLYQQK-KHAKEMKAKQ----VKVEVKEIRFGPQTDEHDYNFKLKHAKEFLDAG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+V+ G+ KE+ E L L R + +E+ VE P +E K+ + I
Sbjct: 117 NKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPALEGKKMFLYI----- 168
Query: 249 GPSKKGGLKK 258
P K G +KK
Sbjct: 169 APKKTGVVKK 178
>gi|325295460|ref|YP_004281974.1| translation initiation factor IF-3 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065908|gb|ADY73915.1| Translation initiation factor IF-3 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 174
Score = 82.8 bits (203), Expect = 4e-13, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 100/181 (55%), Gaps = 13/181 (7%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
K+ R+N+KI A+ V ++ +G K V+ +AL LA+ DLVEV ANPPVC+I
Sbjct: 4 KKLDQTRVNEKIRAREVLVIDSDGTKLGVMPTLKALQLAKEQGLDLVEVSPNANPPVCRI 63
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
MD+ K KYQ++ K + K + I + K V+ + ++ DLQ++ ++ ++KG
Sbjct: 64 MDYGKYKYQQQKKMHEAKKKQKTI-----EVKTVKVRPRTDEHDLQVRIKQTRKFLEKGN 118
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
+VK + + G+++ +LG L ++ + ++DI+ +E P E + I+ P K
Sbjct: 119 KVKAVVMFRGREQAHIELGEAQLMKIYEAVQDIAEIEKKPKKEGRDMIMIL-----APKK 173
Query: 253 K 253
K
Sbjct: 174 K 174
>gi|395780453|ref|ZP_10460915.1| translation initiation factor IF-3 [Bartonella washoensis 085-0475]
gi|423711952|ref|ZP_17686257.1| translation initiation factor IF-3 [Bartonella washoensis Sb944nv]
gi|395412800|gb|EJF79280.1| translation initiation factor IF-3 [Bartonella washoensis Sb944nv]
gi|395418799|gb|EJF85116.1| translation initiation factor IF-3 [Bartonella washoensis 085-0475]
Length = 172
Score = 82.8 bits (203), Expect = 4e-13, Method: Composition-based stats.
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG +V+ EALA+A + DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPCVQLINDEGQNQGIVATQEALAMAADVGLDLVEIVPNAEPPVCKIV 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D ++K V R + G +
Sbjct: 65 DLGKLKYQTQKKAAETRKKQKVIEI-----KEIKMRPNVDVHDYEVKLRAVHRFIGNGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +ES P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGMKLLQRVKEDTSEIAKIESEPKLEGRQMMMVI 169
>gi|261880447|ref|ZP_06006874.1| initiation factor IF3 [Prevotella bergensis DSM 17361]
gi|270332870|gb|EFA43656.1| initiation factor IF3 [Prevotella bergensis DSM 17361]
Length = 228
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 17/201 (8%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
R+N +I A+ VR+V D+G +V+ +AL LAR DLVE+ A PPVC+I+D+ K Y
Sbjct: 11 RVNGQIRAREVRVVSDDGAEVMPTRQALDLARQQGMDLVEISPNAQPPVCRIIDYSKFLY 70
Query: 142 QKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALP 201
Q++ ++K+ + + + D KE+RF + + D K + K+ + +G +V+
Sbjct: 71 QQKKRQKEMKQKQVKV-----DVKEIRFGPQTDDHDYNFKLNHAKQFLKEGNKVRAYVFF 125
Query: 202 VGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLK 257
G+ KE+ E L L R + +E+ + VE P +E K+ + + P K +K
Sbjct: 126 RGRSILFKEQGELL---LLRFANDLEEYAKVEQLPKLEGKRMFLFL-----APKKVSVVK 177
Query: 258 KLKAVGDTSGVSKAATPSSTI 278
+ + D KAA S +
Sbjct: 178 QSQQKRDRLAAEKAAKEQSKL 198
>gi|29427472|sp|Q8EPF5.2|IF3_OCEIH RecName: Full=Translation initiation factor IF-3
Length = 172
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI A+ VRL+ G + V SR EAL +A + DLV V A PPVC+IMD+ K +
Sbjct: 7 VNEKIRAREVRLIDSNGDQLGVKSRQEALDIATTRNLDLVLVAPNAKPPVCRIMDYGKYR 66
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVRF+ I D + K ++ ++KG +VK
Sbjct: 67 FEQQKKEKEARKKQKVI-----NVKEVRFTPGIGDHDFETKLKNARKFLEKGDKVKAAVR 121
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L R + ++D+ +E+ P +E + + ++
Sbjct: 122 FRGRAITHKELGREVLDRFAEEVKDLGTIETKPKMEGRNMFMMV 165
>gi|423719000|ref|ZP_17693182.1| translation initiation factor IF-3 [Geobacillus thermoglucosidans
TNO-09.020]
gi|383367903|gb|EID45178.1| translation initiation factor IF-3 [Geobacillus thermoglucosidans
TNO-09.020]
Length = 173
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + SR EAL +A L DLV V A PPVC+IMD+ K +
Sbjct: 9 INENIRAREVRLIDPNGEQLGIKSRQEALEIAARLNLDLVLVAPNAKPPVCRIMDYGKFR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 69 FEQQKKEKEARKKQKVI-----NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 123
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + DI VVE+ P ++ + + ++
Sbjct: 124 FKGRAITHKEIGQRVLERFSEACSDIGVVETAPKMDGRSMFLVL 167
>gi|257092826|ref|YP_003166467.1| translation initiation factor IF-3 [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045350|gb|ACV34538.1| translation initiation factor IF-3 [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 183
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +INA VRLV +EG + V+S AL+LA DLVE+ A PPVC+I+DF K
Sbjct: 18 RVNQEINAPEVRLVGEEGEQLGVMSVRAALSLAEEAGLDLVEIAPMAQPPVCRIVDFGKF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K + AK K K+ KEV+F ++ D Q+K + R +++ +VK
Sbjct: 78 KYQ-EQKRQHEAKLKQ----KQVQVKEVKFRPGTDENDYQIKLRNMTRFLEEEDKVKVTL 132
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ +D+G + R+ +++++VVE P +E +Q ++ PSKK
Sbjct: 133 RFRGREMAHQDIGMRQIERIRADLQEMAVVEQMPKMEGRQMVMVL-----TPSKK 182
>gi|256827013|ref|YP_003150972.1| translation initiation factor 3 [Cryptobacterium curtum DSM 15641]
gi|256583156|gb|ACU94290.1| bacterial translation initiation factor 3 (bIF-3) [Cryptobacterium
curtum DSM 15641]
Length = 207
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PRLN+ I A+ VRL+ +G + + + EA +A DLVE+ A PPVC++MD+ K
Sbjct: 20 PRLNEAITAREVRLIGYDGEQMGICATEEAQHVADMAGLDLVEIAPNAQPPVCRVMDYGK 79
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY++ +K K K +S I + KE++F KI+ D K V R +++G +VK
Sbjct: 80 FKYEQAIKAKQARKNQSKIEI-----KEMKFRPKIDVGDYTTKKKHVIRFLEQGNKVKIT 134
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G L RL D ++D++ +E+ P +E + + +I
Sbjct: 135 IMFRGREMAHPEQGLSILERLADDLKDMAAIEAQPKMEGRNMHMVI 180
>gi|227498536|ref|ZP_03928680.1| translation initiation factor IF-3 [Acidaminococcus sp. D21]
gi|352684285|ref|YP_004896270.1| translation initiation factor IF-3 [Acidaminococcus intestini
RyC-MR95]
gi|226903992|gb|EEH89910.1| translation initiation factor IF-3 [Acidaminococcus sp. D21]
gi|350278940|gb|AEQ22130.1| translation initiation factor IF-3 [Acidaminococcus intestini
RyC-MR95]
Length = 175
Score = 82.4 bits (202), Expect = 5e-13, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VR+ +G + ++ AL LA DLVE+ KA PPVC+IMD+ K
Sbjct: 10 RINEEIRAREVRVNTVDGEQLGIMPLARALELAAQHHLDLVEIAPKAKPPVCRIMDYGKY 69
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + + D KEV+ +IE+ D +K R ++ G +VK
Sbjct: 70 QYEQQKREKEARKRQKTV-----DVKEVKLRIRIEEHDFDVKTKNAIRFLEGGDKVKATI 124
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+++ ++DI+V+E P +E + I+
Sbjct: 125 MFRGRELTHPELGEELLNKMAVKLQDIAVIERKPKLEGRNMVMIV 169
>gi|300726433|ref|ZP_07059881.1| translation initiation factor IF-3 [Prevotella bryantii B14]
gi|299776281|gb|EFI72843.1| translation initiation factor IF-3 [Prevotella bryantii B14]
Length = 208
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 12/176 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
R+N++I+ + VR+V DEG +V+ +AL LAR DLVE+ A PPVC+++D+ K Y
Sbjct: 14 RVNEQIHIREVRVVSDEGSEVMPTRKALDLARQQGVDLVEISPNAQPPVCRLIDYSKFLY 73
Query: 142 QKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALP 201
Q++ ++K+ + + + + KE+RF + ++ D Q K + +++G +V+
Sbjct: 74 QQKKRQKEMKQKQVKV-----EVKEIRFGPQTDEHDYQFKLKHAQEFLEEGNKVRAYVFF 128
Query: 202 VGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G+ KE+ E L L R + +E+ VE P +E K+ + + K G +KK
Sbjct: 129 RGRSILFKEQGEVL---LLRFANDLEEFGKVEQMPKLEGKKMFLYMAPKKVGQAKK 181
>gi|317129890|ref|YP_004096172.1| translation initiation factor IF-3 [Bacillus cellulosilyticus DSM
2522]
gi|315474838|gb|ADU31441.1| translation initiation factor IF-3 [Bacillus cellulosilyticus DSM
2522]
Length = 166
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRLV G + V ++ EAL +A++ DLV V A PPVC+IMD+ K +
Sbjct: 2 INDAIRAREVRLVGANGDQIGVKTKQEALEMAQNANLDLVMVAPNAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + I + KEVR S IE+ D K ++ + KG +VK
Sbjct: 62 YEQQKKEKEARKNQKII-----NTKEVRLSPTIEEHDFNTKLRNARKFLTKGDKVKAAIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +G L +L EDI+ VE P +E + + I+
Sbjct: 117 FRGRAITHSQIGKVVLEKLASECEDIATVEQKPKMEGRSMFLIL 160
>gi|148655186|ref|YP_001275391.1| translation initiation factor IF-3 [Roseiflexus sp. RS-1]
gi|148567296|gb|ABQ89441.1| bacterial translation initiation factor 3 (bIF-3) [Roseiflexus sp.
RS-1]
Length = 238
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 113/204 (55%), Gaps = 19/204 (9%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VRL+ + G ++ VS +AL++A DLVEV A PPVC+I+D+ K
Sbjct: 33 RINNRIRAREVRLIDENGAQIGIVSIRDALSMAEERGLDLVEVAPNAVPPVCRILDYGKF 92
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++ KE++ K + K+ + K++R K + DL++KA +R + +G +VK
Sbjct: 93 RYEQSKKEREARKNQ-----KQVEVKQIRLEPKTDDHDLEVKAKQARRFLLEGDKVKFNL 147
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKK 258
G++ +++G L R+ + + DISVVE P +E + + + P++K +
Sbjct: 148 RFRGREIFHQEIGLEMLERMAEELRDISVVEQRPTMEGR-----VLTLLLAPNQKAKTQA 202
Query: 259 LK------AVGDTSGVSKAATPSS 276
+ + TS V+K + P+S
Sbjct: 203 QRERQQQTSRSTTSSVAKVSAPAS 226
>gi|395782206|ref|ZP_10462610.1| translation initiation factor IF-3 [Bartonella rattimassiliensis
15908]
gi|395419145|gb|EJF85446.1| translation initiation factor IF-3 [Bartonella rattimassiliensis
15908]
Length = 172
Score = 82.4 bits (202), Expect = 5e-13, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG VV+ EALA+A + DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPHVQLINDEGQHQGVVTIQEALAMAANAGLDLVEIVPNAEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K V R +D G +
Sbjct: 65 DLGKLKYQTQKKASETRKKQKVIEI-----KEIKMRPNVDVHDYGVKLKAVHRFIDHGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +E P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIELEPKLEGRQMMMVI 169
>gi|225351394|ref|ZP_03742417.1| hypothetical protein BIFPSEUDO_02988 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157738|gb|EEG71021.1| hypothetical protein BIFPSEUDO_02988 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 232
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 11 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D ++K V R ++ G +VK
Sbjct: 71 YKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFEVKKGHVVRFLNGGDKVKVT 125
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL +E+ VE P E
Sbjct: 126 IMLRG-REQSRPIGGVELLQRLASEVEEYGTVEFAPKQE 163
>gi|78042833|ref|YP_360407.1| translation initiation factor IF-3 [Carboxydothermus
hydrogenoformans Z-2901]
gi|77994948|gb|ABB13847.1| translation initiation factor IF-3 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 169
Score = 82.4 bits (202), Expect = 6e-13, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N++I A+ VR+V ++G + ++ EAL +A ++ DLVE+ A PPVCKIMD
Sbjct: 2 TKDLRINEEIRAKEVRVVKEDGTQLGIMPLKEALKIAEEMELDLVEIAPTAKPPVCKIMD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K +YQ+ KEK+ K + I + KE++ IE+ D Q+K V R ++ G +V
Sbjct: 62 YGKYRYQQSKKEKEARKKQKIINV-----KEIKIRPTIEEHDFQVKLRNVLRFLEDGDKV 116
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
K + G++ ++ L+++ + I+VVE +E + I+
Sbjct: 117 KVTVMFRGRELSHPEIAYELLNKMAQEVGSIAVVERPAKLEGRNMIMIL 165
>gi|399886947|ref|ZP_10772824.1| translation initiation factor IF-3 [Clostridium arbusti SL206]
Length = 173
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 7/162 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQ 142
LN+ I ++ VRL E +++ EAL+LAR DLV V A PPVCKIMD+ K Y+
Sbjct: 12 LNEGIKSREVRLA-GEDSRIIKTEEALSLARESDLDLVMVSPNAKPPVCKIMDYSKYIYE 70
Query: 143 KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPV 202
+ K K K + ++L KEVR S IE+ D+ +KA+ K+ + G +VK
Sbjct: 71 QSKKLKLAKKNQKIVSL-----KEVRLSPTIEEHDIDIKANNAKKFLSNGDKVKVSIRFR 125
Query: 203 GKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +G L+ + I +I VVE P +E + + I+
Sbjct: 126 GRQNNNTQVGKKVLAVFVSKIGEIGVVEKTPQLEGRNMFMIL 167
>gi|395216289|ref|ZP_10401265.1| translation initiation factor IF-3 [Pontibacter sp. BAB1700]
gi|394455441|gb|EJF09911.1| translation initiation factor IF-3 [Pontibacter sp. BAB1700]
Length = 174
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 13/167 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK-VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
++NDKI A+ VRLV D + V S +A +A DLVE+ ANPPVC+I+D+ K K
Sbjct: 6 KVNDKITAREVRLVGDNVEQGVFSTRDAQKIANEQNLDLVEISPTANPPVCRIIDYSKFK 65
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K ++ KAK+ +K KE+RF + D + K K ++ G+++K
Sbjct: 66 YEQKKKTRE-MKAKA----QKVVIKEIRFGPNTDDHDFEFKLKHAKSFLESGFKIKSYVH 120
Query: 201 PVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VG+ KE E L L + +EDI+ VE P +E K+ + I+
Sbjct: 121 FVGRTIVFKERGEIL---LLKFAQALEDIAKVEQLPKLEGKRMFLIL 164
>gi|383807204|ref|ZP_09962765.1| translation initiation factor IF-3 [Candidatus Aquiluna sp.
IMCC13023]
gi|383299634|gb|EIC92248.1| translation initiation factor IF-3 [Candidatus Aquiluna sp.
IMCC13023]
Length = 179
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV G +V V +AL LAR DLVEV ++PPVCKIMD+ K KY+ K ++
Sbjct: 4 VRLVGPAGEQVGVVDIDQALKLAREADLDLVEVSPGSSPPVCKIMDYGKFKYEAAQKVRE 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K + + LK VRF KI+ D + KA V++ + G +VK M + G+++
Sbjct: 64 ARKNQVNTVLKT-----VRFGLKIDSHDYETKAGQVRKFLKAGDKVKVMVVFRGREQSRP 118
Query: 210 DLGGYLSR-LIDLIEDISVVESGPHVERKQAYAII 243
++G L R L D + + VES P ++ + +I
Sbjct: 119 EMGVKLLRNLADQVTEFGTVESNPSIDGRSMVMVI 153
>gi|24211783|sp|Q8P7Z3.1|IF3_XANCP RecName: Full=Translation initiation factor IF-3
Length = 182
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V +SR EALA A DLVE+ +A+PPVCKIMDF K
Sbjct: 17 RKNQEIRVPRVRVIGSDGEMVGVLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKF 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ K+ + AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK
Sbjct: 77 KFEQQ-KKANEAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNI 131
Query: 200 LPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I DL EDI V+ES P +E +Q +I
Sbjct: 132 RFRGREMSHQELGREMAARIEADLGEDI-VIESRPRLEGRQMVMMI 176
>gi|374992886|ref|YP_004968385.1| translation initiation factor IF-3 [Desulfosporosinus orientis DSM
765]
gi|357211252|gb|AET65870.1| translation initiation factor IF-3 [Desulfosporosinus orientis DSM
765]
Length = 178
Score = 82.4 bits (202), Expect = 6e-13, Method: Composition-based stats.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I + VRLV +EG + ++ +A+ LA DLVE+ A PPVCK+MD+ K
Sbjct: 13 RINDEIRIRDVRLVGEEGEQLGIMPTRDAMNLAIEKSLDLVEIAPTAKPPVCKLMDYGKY 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ ++K+ K + K + KEV+ IE D + KA +R + G +VK
Sbjct: 73 KYEQAKRDKEARKKQ-----KSMEIKEVKLRPNIEDHDFETKARNAQRFLQDGDKVKVTI 127
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ +LG L RL + + S +E P +E + I+ K
Sbjct: 128 MFRGREVTHPELGRTLCVRLAEFCKAESTIEREPKLEGRNMIMILASAK 176
>gi|269925882|ref|YP_003322505.1| translation initiation factor IF-3 [Thermobaculum terrenum ATCC
BAA-798]
gi|269789542|gb|ACZ41683.1| translation initiation factor IF-3 [Thermobaculum terrenum ATCC
BAA-798]
Length = 181
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 108 ALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEV 167
AL LAR DLVEV ANPPVC++MD+ K +Y++ KE++ K++ I + KEV
Sbjct: 17 ALDLARQKGLDLVEVAPNANPPVCRLMDYGKFRYEQTKKERESRKSQKQIVI-----KEV 71
Query: 168 RFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYL-SRLIDLIEDIS 226
R KI+ DLQ KA + +++G +VK G++ ++G L RL+DLI D +
Sbjct: 72 RLKPKIDVHDLQTKAKQARNFLEEGDKVKVTVQFRGREVVHPEIGQELVQRLMDLIGDAA 131
Query: 227 VVESGPHVERKQAYAII 243
+E P ++ K A++
Sbjct: 132 TIEQQPKLDGKNMTALL 148
>gi|304439755|ref|ZP_07399653.1| translation initiation factor IF3 [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371742|gb|EFM25350.1| translation initiation factor IF3 [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 184
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N+ I Q VRL+ ++G + VVSR AL LA + DLV++ +A PPVC+IMD+ K
Sbjct: 17 QINEAIREQEVRLIDEDGEQIGVVSRRHALDLAIEKRLDLVKIAPQAKPPVCRIMDYGKY 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+ +EK+ K + I++ KE+RF+ IE DL+ KA+ + +G RVK
Sbjct: 77 RYELIKREKESKKKQKVISI-----KEIRFTPSIEDHDLRTKANQTIGFLKRGDRVKVSV 131
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ +LG L ++LI D VV+ P +E
Sbjct: 132 RFRGRELGHTELGREVLDNFVELISDNGVVDKKPKME 168
>gi|427412556|ref|ZP_18902748.1| translation initiation factor IF-3 [Veillonella ratti
ACS-216-V-Col6b]
gi|425716363|gb|EKU79347.1| translation initiation factor IF-3 [Veillonella ratti
ACS-216-V-Col6b]
Length = 173
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVL--DEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ VR+V +E ++S EALALA Q DLVEV PPVC+IM++ K
Sbjct: 9 PRINEEIRAREVRVVSADNEQLGIMSAREALALAEEHQLDLVEVAPNGKPPVCRIMNYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + TL KEV+ IE D +K + + +G +VK
Sbjct: 69 YRYEQQKREKEAKKKQKTFTL-----KEVKLRPHIEDHDFYVKMKNASKFLAEGNKVKVT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R +E+ +VVE +E + I+
Sbjct: 124 IMFRGRELSHPELGQNVLTRFAKELEEQAVVEKAAKLEGRNMTMIL 169
>gi|319957837|ref|YP_004169100.1| translation initiation factor 3 (bif-3) [Nitratifractor salsuginis
DSM 16511]
gi|319420241|gb|ADV47351.1| bacterial translation initiation factor 3 (bIF-3) [Nitratifractor
salsuginis DSM 16511]
Length = 183
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 14/172 (8%)
Query: 73 KDEKETSGPR------LNDKINAQFVRLVLD--EGHKVVSRHEALALARSLQCDLVEVDR 124
K ++ T G R +ND I A+ +R+V D E + ++ R +AL +A DLV +
Sbjct: 3 KQQRNTRGKRREDSVIMNDAIRARELRVVGDDKEQYGIIPRADALKIAEEKGLDLVLISP 62
Query: 125 KANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADT 184
A PPV KIMD+ K KYQ E K+K+ K + I + KEV+FS KI D+ K
Sbjct: 63 DATPPVAKIMDYGKHKYQVEKKKKEAKKNQKKI-----EVKEVKFSCKIADNDIAYKVKH 117
Query: 185 VKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ ++KG VK G++ +LG L R+ +IEDI V+E PH E
Sbjct: 118 AREFLEKGKHVKLRVFLRGREMANPELGVEVLKRVWPMIEDIGVMEKAPHQE 169
>gi|260911582|ref|ZP_05918167.1| translation initiation factor IF3 [Prevotella sp. oral taxon 472
str. F0295]
gi|260634288|gb|EEX52393.1| translation initiation factor IF3 [Prevotella sp. oral taxon 472
str. F0295]
Length = 223
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 17/190 (8%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K+E+ + R+N++I A+ VR+V + G V+ +AL +ARS DLVE+ A PPVC+
Sbjct: 2 KNERIKNQYRINEQIRAKEVRIVNEGGSTVMPTRQALDMARSQGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
I+D+ K YQ++ K KAK K + KE+RF + ++ D K K +D G
Sbjct: 62 IIDYSKFLYQQK-KHAKEMKAKQ----VKVEVKEIRFGPQTDEHDYNFKLKHAKEFLDAG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+V+ G+ KE+ E L L R + +E+ VE P +E K+ + I
Sbjct: 117 NKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPALEGKKMFLYI----- 168
Query: 249 GPSKKGGLKK 258
P K G +KK
Sbjct: 169 APKKAGIVKK 178
>gi|345010530|ref|YP_004812884.1| translation initiation factor IF-3 [Streptomyces violaceusniger Tu
4113]
gi|344036879|gb|AEM82604.1| Translation initiation factor IF-3 [Streptomyces violaceusniger Tu
4113]
Length = 205
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 2 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAATARPPVCKLMD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 62 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 116
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + ++++ VES P + + ++ GP KK
Sbjct: 117 KITIMFRGREQSRPELGYRLLQRLAEDVQELGFVESSPKQDGRNMIMVL-----GPHKK 170
>gi|212715579|ref|ZP_03323707.1| hypothetical protein BIFCAT_00478 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660946|gb|EEB21521.1| hypothetical protein BIFCAT_00478 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 232
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 11 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D ++K V R ++ G +VK
Sbjct: 71 YKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFEVKKGHVVRFLNGGDKVKVT 125
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL +E+ VE P E
Sbjct: 126 IMLRG-REQSRPIGGVELLQRLAGEVEEYGTVEFAPKQE 163
>gi|285017865|ref|YP_003375576.1| translation initiation factor if-3 [contains: if-3l; if-3s] protein
[Xanthomonas albilineans GPE PC73]
gi|283473083|emb|CBA15588.1| probable translation initiation factor if-3 [contains: if-3l;
if-3s] protein [Xanthomonas albilineans GPE PC73]
Length = 153
Score = 82.0 bits (201), Expect = 7e-13, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA+A DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 11 VLSRDEALAMAEEDGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 65
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 66 VEIKEIKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEA 125
Query: 220 DLIEDISVVESGPHVERKQAYAII 243
DL EDI V+ES P +E +Q +I
Sbjct: 126 DLGEDI-VIESRPRLEGRQMVMMI 148
>gi|89054259|ref|YP_509710.1| translation initiation factor IF-3 [Jannaschia sp. CCS1]
gi|88863808|gb|ABD54685.1| bacterial translation initiation factor 3 (bIF-3) [Jannaschia sp.
CCS1]
Length = 221
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+ND+I + VRL+ EG VV+ A+ LA DLVE+ A+PPVCKIMDF
Sbjct: 54 TGPRVNDRIRSDNVRLIGAEGENLGVVTPARAMDLAADADLDLVEISPNADPPVCKIMDF 113
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ + +E + K + I D KEV+ + D K + ++ G +VK
Sbjct: 114 GKYKYETQKREAEARKKQKTI-----DIKEVKMRPGTDDHDFNRKVTDAVKFLEGGDKVK 168
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L +++D IE I +ES P +E +Q +I
Sbjct: 169 VTLRFRGREMAHQNLGREMLEKVVDRIEGIGKIESMPRMEGRQMVMMI 216
>gi|330994119|ref|ZP_08318047.1| Translation initiation factor IF-3 [Gluconacetobacter sp. SXCC-1]
gi|329758586|gb|EGG75102.1| Translation initiation factor IF-3 [Gluconacetobacter sp. SXCC-1]
Length = 193
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 97/168 (57%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+N++I VRL+ +EG ++S +ALA A S+ DL+E+ A PPV K++D+
Sbjct: 28 EGPRVNEEIRVPQVRLIDEEGEMLGIMSTRDALARAYSVGLDLLEISPNAEPPVAKVLDY 87
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ K+++ A+ K + + KEV+ I++ D Q+K +K + +G +VK
Sbjct: 88 GKFKYEQQ-KKRNEARKKQKVI----EIKEVKVRPNIDENDYQVKMRAMKSFIGEGDKVK 142
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ +++++ VE P +E +Q ++
Sbjct: 143 VTLRFRGREMAHQDLGVKVLERIRTEMDELAKVEHMPKLENRQMIMVL 190
>gi|256379477|ref|YP_003103137.1| translation initiation factor IF-3 [Actinosynnema mirum DSM 43827]
gi|255923780|gb|ACU39291.1| translation initiation factor IF-3 [Actinosynnema mirum DSM 43827]
Length = 204
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV +A PPVCK+MD
Sbjct: 12 STEPRINDRIRVPEVRLVGPNGEQVGIVRIEDALRLAQESDLDLVEVAAQARPPVCKLMD 71
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K ++ ++ +T+ KE + KI+ D Q K V R + +G +V
Sbjct: 72 YGKYKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDPHDYQTKKGHVARFLGQGNKV 126
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L RL + + ++ VES P
Sbjct: 127 KVTIMFRGREQSRPELGYRLLQRLAEDVAELGFVESNP 164
>gi|317052583|ref|YP_004113699.1| translation initiation factor IF-3 [Desulfurispirillum indicum S5]
gi|316947667|gb|ADU67143.1| translation initiation factor IF-3 [Desulfurispirillum indicum S5]
Length = 156
Score = 82.0 bits (201), Expect = 7e-13, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 8/159 (5%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+R+VLD G V++R EAL A + DLVEV A PPVCKIMDF K Y++ K+K+
Sbjct: 1 MRVVLDSGEMLGVLTREEALEAAHNRGLDLVEVAPAAKPPVCKIMDFGKFAYEQSKKQKE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K + I + KEV+F KIE+ D K +R ++ G +VK + G++
Sbjct: 61 AKKNQKLIVI-----KEVKFRPKIEEHDYNFKLKHAQRFLEDGAKVKVTIMYRGREMAHT 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
++G L++++ +E + VE+ P +E + ++ VK
Sbjct: 116 EIGREILNKVVADMEGLCTVEAPPKLEGRNMTMMLAPVK 154
>gi|49474873|ref|YP_032914.1| translation initiation factor IF-3 [Bartonella henselae str.
Houston-1]
gi|61213111|sp|Q6G570.1|IF3_BARHE RecName: Full=Translation initiation factor IF-3
gi|49237678|emb|CAF26865.1| Translation initiation factor IF-3 [Bartonella henselae str.
Houston-1]
Length = 172
Score = 82.0 bits (201), Expect = 7e-13, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR N I V+L+ DEG VV+ EALA+A + DLVE+ A PPVCKI+D
Sbjct: 8 GPRANQDIRVPRVQLINDEGQHQGVVTIQEALAMAAEVGLDLVEIVPNAEPPVCKIIDLG 67
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KYQ + K + K + I + KE++ ++ D +K + R + G +VK
Sbjct: 68 KLKYQTQKKAAETRKKQKVIEI-----KEIKMRPNVDVHDYGVKLKAIHRFIGNGDKVKI 122
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ + +I+ +ES P +E +Q +I
Sbjct: 123 TLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIESEPKLEGRQMMMVI 169
>gi|294501488|ref|YP_003565188.1| translation initiation factor IF-3 [Bacillus megaterium QM B1551]
gi|295706836|ref|YP_003599911.1| translation initiation factor IF-3 [Bacillus megaterium DSM 319]
gi|384044675|ref|YP_005492692.1| translation initiation factor IF-3 [Bacillus megaterium WSH-002]
gi|294351425|gb|ADE71754.1| translation initiation factor IF-3 [Bacillus megaterium QM B1551]
gi|294804495|gb|ADF41561.1| translation initiation factor IF-3 [Bacillus megaterium DSM 319]
gi|345442366|gb|AEN87383.1| translation initiation factor IF-3 [Bacillus megaterium WSH-002]
Length = 167
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + S++EAL +A + DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEGIRAREVRLIDQNGEQLGIKSKNEALEIASRVNLDLVMVAANAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KE++ K + + L KEVR S I++ D K ++ ++KG +VK
Sbjct: 63 YEQQRKEREARKNQKVVNL-----KEVRLSPTIDEHDFNTKLRNARKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ + +G L R ED+S VES P +E + + ++
Sbjct: 118 FKGRAITHKGIGQKVLERFSQACEDVSSVESAPKMEGRSMFLVL 161
>gi|444306945|ref|ZP_21142697.1| translation initiation factor IF-3 [Arthrobacter sp. SJCon]
gi|443480722|gb|ELT43665.1| translation initiation factor IF-3 [Arthrobacter sp. SJCon]
Length = 312
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV +A PPVCK+MDF K KY+ +K ++
Sbjct: 1 MRLVGPAGEQVGIVRIEDALRLAAESDLDLVEVAPQAKPPVCKLMDFGKYKYEAAVKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K +++ L KE+RF KI+ D + K R + G +VK M G++++
Sbjct: 61 ARKNQTNTVL-----KEIRFRLKIDTHDYETKRGHALRFLGAGDKVKAMIQFRGREQQRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++G L R D + ++ VVES P ++ + ++
Sbjct: 116 EMGIRLLQRFADDVAEVGVVESSPRIDGRNMVMVV 150
>gi|410696769|gb|AFV75837.1| translation initiation factor IF-3 [Thermus oshimai JL-2]
Length = 171
Score = 82.0 bits (201), Expect = 7e-13, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 92/155 (59%), Gaps = 10/155 (6%)
Query: 84 NDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
N++I A+ VR++ +G + ++ EAL LAR DLV V A+PPV +IMD+ K +Y
Sbjct: 7 NERIRAKQVRVIGPDGQQLGIMDTREALRLAREQDLDLVLVGPTADPPVARIMDYSKWRY 66
Query: 142 QKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ EK+ R KA K+ + K ++F KI+ D Q K +KR +++G++VK +
Sbjct: 67 EQQVAEKEARKKA------KRTEVKSIKFRVKIDNHDYQTKLGHIKRFLEEGHKVKVTIM 120
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHV 234
G++ +LG L R+ + ++ ++VVE P +
Sbjct: 121 FRGREVSHPELGQRLLERVAEDLKGLAVVEMKPEL 155
>gi|313139835|ref|ZP_07802028.1| translation initiation factor If-3 [Bifidobacterium bifidum NCIMB
41171]
gi|313132345|gb|EFR49962.1| translation initiation factor If-3 [Bifidobacterium bifidum NCIMB
41171]
Length = 248
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 28 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 87
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D ++K V R ++ G +VK
Sbjct: 88 FKYNEKIKAREARRNQS-----TAEIKEIRFRLKIDDHDFEVKKGHVVRFLNGGDKVKVT 142
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL +E+ VES P E
Sbjct: 143 IMLRG-REQSRPIGGVELLQRLAADVEEYGTVESRPKQE 180
>gi|306822458|ref|ZP_07455836.1| translation initiation factor IF3 [Bifidobacterium dentium ATCC
27679]
gi|304554003|gb|EFM41912.1| translation initiation factor IF3 [Bifidobacterium dentium ATCC
27679]
Length = 232
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 11 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D ++K V R ++ G +VK
Sbjct: 71 FKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFEVKKGHVVRFLNGGDKVKVT 125
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL +E+ VE P E
Sbjct: 126 IMLRG-REQSRPIGGVELLQRLAQEVEEYGTVEFAPKQE 163
>gi|386715036|ref|YP_006181359.1| translation initiation factor IF-3 [Halobacillus halophilus DSM
2266]
gi|384074592|emb|CCG46085.1| translation initiation factor IF-3 [Halobacillus halophilus DSM
2266]
Length = 167
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI A+ VRL+ G + V SR+EAL +A + DLV V A PPVC++MD+ K +
Sbjct: 3 VNEKIRAREVRLIDVNGEQLGVKSRNEALDIAANANLDLVMVAPNAKPPVCRVMDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K ++ I + KE+R S IE+ D K ++ + KG +VK
Sbjct: 63 FEQQKKEKEARKKQTIIKV-----KEIRLSPNIEEHDFNTKLRNARKFLSKGDKVKASVR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L R+ + +DI+ VE+ P +E + + ++
Sbjct: 118 FRGRAITHKELGQNVLERVAEECKDIAQVETKPKMEGRSMFLML 161
>gi|380512205|ref|ZP_09855612.1| translation initiation factor IF-3 [Xanthomonas sacchari NCPPB
4393]
Length = 155
Score = 81.6 bits (200), Expect = 8e-13, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA+A DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 13 VLSRDEALAMAEEDGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 67
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 68 VEIKEIKFRPVTDEGDYQIKLRNMRRFIEEGDKVKVNIRFRGREMSHQELGREMAARIEA 127
Query: 220 DLIEDISVVESGPHVERKQAYAII 243
DL EDI V+ES P +E +Q +I
Sbjct: 128 DLGEDI-VIESRPRLEGRQMVMMI 150
>gi|374578840|ref|ZP_09651934.1| translation initiation factor IF-3 [Desulfosporosinus youngiae DSM
17734]
gi|374414922|gb|EHQ87357.1| translation initiation factor IF-3 [Desulfosporosinus youngiae DSM
17734]
Length = 171
Score = 81.6 bits (200), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I + VRLV +EG + +++ +AL LA DLVE+ A PPVCK+MD+ K
Sbjct: 6 RINDEIRVRDVRLVGEEGEQLGIMTARDALNLAIEKSLDLVEIAPTAKPPVCKLMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ ++K+ K + K + KEV+ IE D + KA +R + G +VK
Sbjct: 66 KYEQAKRDKEARKKQ-----KSMEIKEVKLRPNIEDHDFETKARNAQRFLQDGDKVKVTI 120
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ +LG L RL + + VE P +E + I+ K
Sbjct: 121 MFRGREVTHPELGRALCIRLAEFCKAECAVEREPKLEGRNMIMILASTK 169
>gi|171742545|ref|ZP_02918352.1| hypothetical protein BIFDEN_01658 [Bifidobacterium dentium ATCC
27678]
gi|171278159|gb|EDT45820.1| translation initiation factor IF-3 [Bifidobacterium dentium ATCC
27678]
Length = 232
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 11 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D ++K V R ++ G +VK
Sbjct: 71 FKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFEVKKGHVVRFLNGGDKVKVT 125
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL +E+ VE P E
Sbjct: 126 IMLRG-REQSRPIGGVELLQRLAQEVEEYGTVEFAPKQE 163
>gi|300855256|ref|YP_003780240.1| translation initiation factor IF-3 [Clostridium ljungdahlii DSM
13528]
gi|300435371|gb|ADK15138.1| predicted translation initiation factor IF-3 [Clostridium
ljungdahlii DSM 13528]
Length = 170
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQ 142
LN++I A +RLV ++ ++V+ +AL +AR DLV V +A PPVCKIM++ K Y+
Sbjct: 10 LNEEIRADKIRLVGEKESEIVNTKDALNMAREQGMDLVAVSPQAKPPVCKIMNYSKFLYE 69
Query: 143 KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPV 202
+ K K K + + L KEVR S IE+ D+++KA+ ++ + KG +VK
Sbjct: 70 QSKKAKQAKKNQKIVEL-----KEVRLSATIEENDIEIKANNARKFLAKGNKVKVSIRFR 124
Query: 203 GKKEETEDLG-----GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ LG +LS+L ++ SVVE P +E + I+
Sbjct: 125 GRQNNYTSLGRKVFDTFLSKL----DESSVVERAPKLEGNNMFMIL 166
>gi|152993996|ref|YP_001359717.1| translation initiation factor IF-3 [Sulfurovum sp. NBC37-1]
gi|151425857|dbj|BAF73360.1| translation initiation factor IF-3 [Sulfurovum sp. NBC37-1]
Length = 183
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 8/151 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A +R++ D+G + ++SR EAL +A DLV V A PPV K+MD+ K K
Sbjct: 20 MNDAIRASELRVLGDDGEQYGIISRDEALKIAEDKGLDLVLVSPDAKPPVAKVMDYGKHK 79
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ E K+K+ K + KK + KEV+FS KI D+ K + ++KG VK
Sbjct: 80 YQLEKKKKEARKNQ-----KKIEVKEVKFSCKIADNDIAYKVKHAREFLEKGKHVKLRVF 134
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
G++ + G L+R+ ++EDI+ +ES
Sbjct: 135 LRGREMANPEWGVEVLNRVWPMLEDIAQLES 165
>gi|163867351|ref|YP_001608545.1| translation initiation factor IF-3 [Bartonella tribocorum CIP
105476]
gi|189028351|sp|A9ILC8.1|IF3_BART1 RecName: Full=Translation initiation factor IF-3
gi|161016992|emb|CAK00550.1| translation initiation factor IF-3 [Bartonella tribocorum CIP
105476]
Length = 172
Score = 81.6 bits (200), Expect = 9e-13, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG VVS EALA+A DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPHVQLINDEGQHQGVVSIQEALAMAAEAGLDLVEIVPNAEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K + R +D G +
Sbjct: 65 DLGKLKYQTQKKAAETRKKQKVIEI-----KEIKVRPNVDVHDYGVKLKAIHRFIDHGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +E P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIELEPKLEGRQMMMVI 169
>gi|239905698|ref|YP_002952437.1| translation initiation factor IF-3 [Desulfovibrio magneticus RS-1]
gi|239795562|dbj|BAH74551.1| translation initiation factor IF-3 [Desulfovibrio magneticus RS-1]
Length = 185
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 8/169 (4%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S PR N +I A+ VR++ D+G +V + EAL +A+ DLVEV A PPVC+IMD
Sbjct: 11 SSDPRCNHRIRAREVRVIADDGSQVGIIPTSEALRMAQEKGLDLVEVAPNAEPPVCRIMD 70
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F + KYQ++ K ++ K + + L KE++ K ++ D Q K ++R +++G R
Sbjct: 71 FGRFKYQQQKKLQEARKKATTVQL-----KEIKVRPKTDEHDYQTKLKHIRRFIEEGDRC 125
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
K G++ +D G L+R++ + ++ VE P E + ++
Sbjct: 126 KVTVFFRGREIVHKDRGLTILTRVVADLGELIKVEQEPRTEGRMMTMLL 174
>gi|433679725|ref|ZP_20511422.1| Translation initiation factor IF-3 [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430815133|emb|CCP42029.1| Translation initiation factor IF-3 [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 146
Score = 81.6 bits (200), Expect = 9e-13, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V++R EALALA DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 4 VLTRDEALALAEEDGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 58
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 59 VEIKEIKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGRQMASRIEA 118
Query: 220 DLIEDISVVESGPHVERKQAYAII 243
DL EDI V+ES P +E +Q +I
Sbjct: 119 DLGEDI-VIESRPRLEGRQMVMMI 141
>gi|410459268|ref|ZP_11313020.1| translation initiation factor IF-3 [Bacillus azotoformans LMG 9581]
gi|409930461|gb|EKN67460.1| translation initiation factor IF-3 [Bacillus azotoformans LMG 9581]
Length = 181
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G ++ SR+EAL +A++ DLV V A PPVC+IMD+ K +
Sbjct: 16 INEEIRAREVRLVGANGDQIGIKSRNEALEMAQTANLDLVMVAPNAKPPVCRIMDYGKFR 75
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K+K+ K + I + KEVR S IE+ D K + ++KG +VK
Sbjct: 76 YEQQKKDKEARKNQKVINI-----KEVRLSPTIEEHDFNTKLRNAIKFLEKGDKVKASIR 130
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L RL + +I+VVE P +E + + ++
Sbjct: 131 FKGRAITHKEIGQRVLDRLAEQCAEIAVVEQKPKMEGRSMFIVL 174
>gi|308808300|ref|XP_003081460.1| translation initiation factor IF-3 (ISS) [Ostreococcus tauri]
gi|116059923|emb|CAL55982.1| translation initiation factor IF-3 (ISS) [Ostreococcus tauri]
Length = 235
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 21/136 (15%)
Query: 80 GPRLNDKINAQFVRLVLD---------------EG-----HKVVSRHEALALARSLQCDL 119
G R+N+ I + VRL+LD EG H V+S EAL +AR++ DL
Sbjct: 42 GVRVNEAIESPTVRLILDKATATTDAMGANGGVEGASTSTHAVMSAREALRMARAMGLDL 101
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
VEV+ PPVC++MD+ + +Y++ K K++ KA + K+ KE+R + KI+ DL+
Sbjct: 102 VEVNGTQTPPVCRMMDYERARYEQRRKMKEQKKASTKAQ-KRDVIKELRLTAKIDAHDLR 160
Query: 180 MKADTVKRLMDKGYRV 195
K K+ ++ G RV
Sbjct: 161 TKMSGAKKFLEAGNRV 176
>gi|261418267|ref|YP_003251949.1| translation initiation factor IF-3 [Geobacillus sp. Y412MC61]
gi|297529121|ref|YP_003670396.1| translation initiation factor IF-3 [Geobacillus sp. C56-T3]
gi|319767773|ref|YP_004133274.1| translation initiation factor IF-3 [Geobacillus sp. Y412MC52]
gi|375009831|ref|YP_004983464.1| translation initiation factor IF-3 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448239004|ref|YP_007403062.1| translation initiation factor IF-3 [Geobacillus sp. GHH01]
gi|261374724|gb|ACX77467.1| translation initiation factor IF-3 [Geobacillus sp. Y412MC61]
gi|297252373|gb|ADI25819.1| translation initiation factor IF-3 [Geobacillus sp. C56-T3]
gi|317112639|gb|ADU95131.1| translation initiation factor IF-3 [Geobacillus sp. Y412MC52]
gi|359288680|gb|AEV20364.1| Translation initiation factor IF-3 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207846|gb|AGE23311.1| translation initiation factor IF-3 [Geobacillus sp. GHH01]
Length = 202
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRL+ G + + S+ EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 37 INEQIRAREVRLIDQNGEQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFR 96
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 97 FEQQKKEKEARKKQKVINV-----KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 151
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + DI+VVE+ P ++ + + ++
Sbjct: 152 FKGRAITHKEIGQRVLDRFSEACADIAVVETAPKMDGRNMFLVL 195
>gi|229817383|ref|ZP_04447665.1| hypothetical protein BIFANG_02645 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785172|gb|EEP21286.1| hypothetical protein BIFANG_02645 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 257
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 10/167 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ +G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 27 PRINDEIRVSQVRLIGPKGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 86
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + ++ + KE+RF KI+ D +K V R ++ G +VK
Sbjct: 87 YKYNEKIKAREARRNQNT-----AEVKEIRFRLKIDDHDFDVKKGHVTRFLNGGDKVKVT 141
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G +E++ +GG L RL +E+ +ES P E + ++
Sbjct: 142 IMLRG-REQSRPIGGVELLQRLAAEVEEYGTIESQPKQEGRNIIMVL 187
>gi|269837202|ref|YP_003319430.1| translation initiation factor IF-3 [Sphaerobacter thermophilus DSM
20745]
gi|269786465|gb|ACZ38608.1| translation initiation factor IF-3 [Sphaerobacter thermophilus DSM
20745]
Length = 204
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 9/169 (5%)
Query: 71 QKKDEKETSGP-RLNDKINAQFVRLVLDEG-HKVVSR-HEALALARSLQCDLVEVDRKAN 127
Q++ T+ P R N++I VRL+ ++G H V R +AL +AR DLVEV A+
Sbjct: 8 QREASISTTRPVRTNERIRVPEVRLIDEDGTHIGVMRTRDALEMARERGLDLVEVQPNAS 67
Query: 128 PPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
PPVC++MD+ K +Y++ +E++ K + + + KEVR KI+ DL K R
Sbjct: 68 PPVCRLMDYGKFRYEESRRERESRKKQRAVVV-----KEVRLRPKIDDHDLNTKGRQAYR 122
Query: 188 LMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G +VK L G++ +D+G G L+RL + + ++VV+ PH+E
Sbjct: 123 FLQSGDKVKITVLFRGREIAHQDIGEGLLNRLAEQLAPVAVVDQPPHME 171
>gi|378550271|ref|ZP_09825487.1| hypothetical protein CCH26_09293 [Citricoccus sp. CH26A]
Length = 335
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 8/159 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV +G +V V +AL LA DLVEV A PPVCK+MDF K KY+ +K ++
Sbjct: 4 VRLVGPQGEQVGIVRIEDALRLATEADLDLVEVAPTAKPPVCKLMDFGKWKYEAAVKARE 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K +++ L KEVRF KI+ D + K ++ + G +VK M G++++
Sbjct: 64 ARKNQTNTVL-----KEVRFRLKIDTHDYETKVGHARKFLTAGDKVKAMIQFRGREQQRP 118
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+LG L + + D+ VES P + + ++ VK
Sbjct: 119 ELGIRLLEKFASDVADVGSVESTPRQDGRNMVMVVGPVK 157
>gi|340352437|ref|ZP_08675312.1| translation initiation factor IF3 [Prevotella pallens ATCC 700821]
gi|339613964|gb|EGQ18677.1| translation initiation factor IF3 [Prevotella pallens ATCC 700821]
Length = 176
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 22/177 (12%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I+A+ VR+V + +V+S +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKMKFQYRVNEQIHAREVRVVNEGNAEVMSTRQALDIARKEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K D KE+RF + ++ D Q K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQ----------VKQDIKEIRFGPQTDEHDYQFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAY 240
+++G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMF 165
>gi|296270015|ref|YP_003652647.1| translation initiation factor IF-3 [Thermobispora bispora DSM
43833]
gi|296092802|gb|ADG88754.1| translation initiation factor IF-3 [Thermobispora bispora DSM
43833]
Length = 199
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+N++I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 2 STEPRINERIRVPEVRLVGPNGEQVGIVPIADALRLAQEADLDLVEVAATARPPVCKLMD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ + ++ + KE++ KI+ D + K V+R + G +V
Sbjct: 62 YGKWKYESAMKAREARRNQAQTVV-----KEIKLRPKIDPHDYETKKGHVERFLRGGDKV 116
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + + ++ VES P + + +I GP KK
Sbjct: 117 KVTIMFRGREQSRPELGYRLLQRLAEDVAELGYVESQPKQDGRNMIMVI-----GPHKK 170
>gi|424793596|ref|ZP_18219687.1| Initiation factor IF-3 [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796532|gb|EKU25024.1| Initiation factor IF-3 [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 146
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V++R EALALA DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 4 VLTRDEALALAEEDGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 58
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 59 VEIKEIKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMASRIEA 118
Query: 220 DLIEDISVVESGPHVERKQAYAII 243
DL EDI V+ES P +E +Q +I
Sbjct: 119 DLGEDI-VIESRPRLEGRQMVMMI 141
>gi|227497641|ref|ZP_03927859.1| possible translation initiation factor IF3 [Actinomyces
urogenitalis DSM 15434]
gi|226832912|gb|EEH65295.1| possible translation initiation factor IF3 [Actinomyces
urogenitalis DSM 15434]
Length = 194
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VV +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D + +++ L
Sbjct: 13 VVRVEDALRLAEEAGLDLVEVAPDARPPVCKLMDYGKFKYESAMKARDARRNQANTQL-- 70
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KEV+F KI+Q D K V+R + G +VKC+ G+++ +LG L R+ +
Sbjct: 71 ---KEVQFRPKIDQHDYATKMGHVERFLKGGDKVKCVVRFRGREQSRPELGIRLLQRVAE 127
Query: 221 LIEDISVVESGPHVERKQAYAII 243
I D+ VES P + +Q ++
Sbjct: 128 EIGDLGTVESHPRQDGRQMVMVL 150
>gi|281420276|ref|ZP_06251275.1| translation initiation factor IF-3 [Prevotella copri DSM 18205]
gi|281405771|gb|EFB36451.1| translation initiation factor IF-3 [Prevotella copri DSM 18205]
Length = 228
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I A+ VR+V D G +V+ +AL LAR + DLVE+ A PPVC+
Sbjct: 2 KNDKMKNQYRVNEQIRARDVRVVSDGGAEVMPTRKALELARQQELDLVEISPNAQPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
I+D+ K YQ++ K+ + + + + KE+RF + ++ D Q K +++G
Sbjct: 62 IVDYSKFLYQQKKHAKEMKQKQVKV-----ETKEIRFGPQTDEHDYQFKLKHAMEFLNEG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+V+ G+ KE+ E L L R + +E+ VE P +E K+ + + K
Sbjct: 117 NKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPKLEGKKMFLYMSPKKA 173
Query: 249 GPSKK 253
G +KK
Sbjct: 174 GTAKK 178
>gi|332297585|ref|YP_004439507.1| Translation initiation factor IF-3 [Treponema brennaborense DSM
12168]
gi|332180688|gb|AEE16376.1| Translation initiation factor IF-3 [Treponema brennaborense DSM
12168]
Length = 173
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 8/162 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E G R+N++I + VRL+ DEG + +V EAL +A+ + DLVEV +ANPPVCKI+
Sbjct: 3 ENKGLRINEQIRVREVRLIDDEGEQKGIVPTIEALKMAKERELDLVEVAPQANPPVCKIL 62
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K ++++E K +D S K KE+R KI DL K+ V+ + +G +
Sbjct: 63 DYGKYRFEQEKKLRD-----SKKNQKLLKLKEIRMQPKIGAGDLDFKSKHVQEFLAEGNK 117
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VK G++ +LG L ++ ++D VVE P +E
Sbjct: 118 VKVTIRFRGRELAHTELGYDVLKEVLKRLDDEYVVEKQPAME 159
>gi|357057537|ref|ZP_09118396.1| translation initiation factor IF-3 [Selenomonas infelix ATCC 43532]
gi|355375196|gb|EHG22485.1| translation initiation factor IF-3 [Selenomonas infelix ATCC 43532]
Length = 187
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+ + VR+ EG + ++ +AL +A DLVEV KA PPVC+IMDF K
Sbjct: 2 RINEEIHIREVRVTSAEGEQLGIMLTRDALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 62 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + D+ +E G +E K I+
Sbjct: 117 MFRGRELSHPELGRAVLDRVAERMTDLVTIERGAKLEGKNMTMIL 161
>gi|255349238|ref|ZP_05381245.1| translation initiation factor IF-3 [Chlamydia trachomatis 70]
gi|255503775|ref|ZP_05382165.1| translation initiation factor IF-3 [Chlamydia trachomatis 70s]
gi|255507456|ref|ZP_05383095.1| translation initiation factor IF-3 [Chlamydia trachomatis D(s)2923]
gi|385242239|ref|YP_005810079.1| translation initiation factor IF-3 [Chlamydia trachomatis E/11023]
gi|385245849|ref|YP_005814672.1| translation initiation factor IF-3 [Chlamydia trachomatis E/150]
gi|296435465|gb|ADH17643.1| translation initiation factor IF-3 [Chlamydia trachomatis E/150]
gi|296439182|gb|ADH21335.1| translation initiation factor IF-3 [Chlamydia trachomatis E/11023]
Length = 198
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PPVCKIMD+ K
Sbjct: 29 RINRQIRAPRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSEPPVCKIMDYGKY 88
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 89 RYDVTKKEKDSKKAQHQVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 143
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 144 MFRGRELAYPEHGHKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 188
>gi|429757443|ref|ZP_19289979.1| translation initiation factor IF-3 [Actinomyces sp. oral taxon 181
str. F0379]
gi|429175113|gb|EKY16566.1| translation initiation factor IF-3 [Actinomyces sp. oral taxon 181
str. F0379]
Length = 224
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 8/159 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
S PR+N++I VRLV G +V V +AL LA DLVEV A PPV K+MD
Sbjct: 12 ISEPRINERIRVPEVRLVGPGGEQVGVVRVEDALRLAEEAGLDLVEVAPDAKPPVAKLMD 71
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K +D + +++ L KE+RF KI+ D +K V+R + G +V
Sbjct: 72 YGKYKYEAAQKARDARRNQANTQL-----KEIRFRLKIDDHDFSVKKGHVERFLSAGDKV 126
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPH 233
K M + G+++ + G L RL + + +++ VES P
Sbjct: 127 KVMIMFRGREQSRPEAGVRLLQRLAEEVGELATVESMPR 165
>gi|255311674|ref|ZP_05354244.1| translation initiation factor IF-3 [Chlamydia trachomatis 6276]
gi|255317975|ref|ZP_05359221.1| translation initiation factor IF-3 [Chlamydia trachomatis 6276s]
gi|385240384|ref|YP_005808226.1| translation initiation factor IF-3 [Chlamydia trachomatis G/9768]
gi|385243161|ref|YP_005811000.1| translation initiation factor IF-3 [Chlamydia trachomatis G/9301]
gi|385246769|ref|YP_005815591.1| translation initiation factor IF-3 [Chlamydia trachomatis G/11074]
gi|296436389|gb|ADH18563.1| translation initiation factor IF-3 [Chlamydia trachomatis G/9768]
gi|296438248|gb|ADH20409.1| translation initiation factor IF-3 [Chlamydia trachomatis G/11074]
gi|297140749|gb|ADH97507.1| translation initiation factor IF-3 [Chlamydia trachomatis G/9301]
Length = 258
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PPVCKIMD+ K
Sbjct: 89 RINRQIRALRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSEPPVCKIMDYGKY 148
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 149 RYDVTKKEKDSKKAQHQVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 203
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 204 MFRGRELAYPEHGYKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 248
>gi|297583668|ref|YP_003699448.1| translation initiation factor IF-3 [Bacillus selenitireducens
MLS10]
gi|297142125|gb|ADH98882.1| translation initiation factor IF-3 [Bacillus selenitireducens
MLS10]
Length = 168
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + V S+ EAL +A++ DLV V A PPVC+IMD+ K +
Sbjct: 3 VNENIRAREVRLIGPNGDQIGVKSKQEALEMAQNADLDLVMVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ + KG +VK
Sbjct: 63 FEQQKKEKEARKKQKVI-----NVKEVRLSPNIEEHDFNTKLRNARKFLTKGDKVKAAIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++G L R+ + +DIS +ES P +E + + I+
Sbjct: 118 FRGRAITHSEIGREVLMRMAEECKDISTIESKPKMEGRSMFLIL 161
>gi|42783752|ref|NP_980999.1| translation initiation factor IF-3 [Bacillus cereus ATCC 10987]
gi|49187466|ref|YP_030718.1| translation initiation factor IF-3 [Bacillus anthracis str. Sterne]
gi|49481334|ref|YP_038621.1| translation initiation factor IF-3 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52140934|ref|YP_085896.1| translation initiation factor IF-3 [Bacillus cereus E33L]
gi|118479723|ref|YP_896874.1| translation initiation factor IF-3 [Bacillus thuringiensis str. Al
Hakam]
gi|170708689|ref|ZP_02899127.1| translation initiation factor IF-3 [Bacillus anthracis str. A0389]
gi|177653087|ref|ZP_02935374.1| translation initiation factor IF-3 [Bacillus anthracis str. A0174]
gi|222098037|ref|YP_002532094.1| translation initiation factor if-3 [Bacillus cereus Q1]
gi|225866552|ref|YP_002751930.1| translation initiation factor IF-3 [Bacillus cereus 03BB102]
gi|229602129|ref|YP_002868854.1| translation initiation factor IF-3 [Bacillus anthracis str. A0248]
gi|254736683|ref|ZP_05194389.1| translation initiation factor IF-3 [Bacillus anthracis str. Western
North America USA6153]
gi|254741721|ref|ZP_05199408.1| translation initiation factor IF-3 [Bacillus anthracis str. Kruger
B]
gi|301056081|ref|YP_003794292.1| translation initiation factor IF-3 [Bacillus cereus biovar
anthracis str. CI]
gi|384182384|ref|YP_005568146.1| translation initiation factor IF-3 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|42739682|gb|AAS43607.1| translation initiation factor IF-3 [Bacillus cereus ATCC 10987]
gi|49181393|gb|AAT56769.1| translation initiation factor IF-3 [Bacillus anthracis str. Sterne]
gi|49332890|gb|AAT63536.1| translation initiation factor IF-3 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974403|gb|AAU15953.1| translation initiation factor IF-3 [Bacillus cereus E33L]
gi|118418948|gb|ABK87367.1| bacterial translation initiation factor 3 (bIF-3) [Bacillus
thuringiensis str. Al Hakam]
gi|170126369|gb|EDS95258.1| translation initiation factor IF-3 [Bacillus anthracis str. A0389]
gi|172081611|gb|EDT66682.1| translation initiation factor IF-3 [Bacillus anthracis str. A0174]
gi|221242095|gb|ACM14805.1| translation initiation factor IF-3 [Bacillus cereus Q1]
gi|225789540|gb|ACO29757.1| translation initiation factor IF-3 [Bacillus cereus 03BB102]
gi|229266537|gb|ACQ48174.1| translation initiation factor IF-3 [Bacillus anthracis str. A0248]
gi|300378250|gb|ADK07154.1| translation initiation factor IF-3 [Bacillus cereus biovar
anthracis str. CI]
gi|324328468|gb|ADY23728.1| translation initiation factor IF-3 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 195
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 31 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 90
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 91 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 145
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 146 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 189
>gi|256830759|ref|YP_003159487.1| translation initiation factor IF-3 [Desulfomicrobium baculatum DSM
4028]
gi|256579935|gb|ACU91071.1| translation initiation factor IF-3 [Desulfomicrobium baculatum DSM
4028]
Length = 173
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ +R+V D+G++ +++ EAL A + DLVEV A PPVCKIMD+ K
Sbjct: 8 RRNKQIRAKEIRVVGDDGNQLGIMTVPEALEQAEAKGLDLVEVAPNAKPPVCKIMDYGKY 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+++ K ++ K ++ I + KE++F + DL K ++R ++ G R K
Sbjct: 68 LYEEKKKSQEAKKRQTQIQV-----KEIKFRPHTDDHDLMTKIKHIRRFIEDGDRCKVTV 122
Query: 200 LPVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +D G L R+++++ D++ VE VE + + ++
Sbjct: 123 FFRGREMAHKDRGQVILDRIVEMVSDVAKVEQTSRVEGRTMFLLL 167
>gi|56421253|ref|YP_148571.1| translation initiation factor IF-3 [Geobacillus kaustophilus
HTA426]
gi|56381095|dbj|BAD77003.1| translation initiation factor IF-3 [Geobacillus kaustophilus
HTA426]
Length = 239
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRL+ G + + S+ EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 74 INEQIRAREVRLIDQNGEQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFR 133
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 134 FEQQKKEKEARKKQKVINV-----KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 188
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + DI+VVE+ P ++ + + ++
Sbjct: 189 FKGRAITHKEIGQRVLDRFSEACADIAVVETAPKMDGRNMFLVL 232
>gi|385241312|ref|YP_005809153.1| translation initiation factor IF-3 [Chlamydia trachomatis G/11222]
gi|385244039|ref|YP_005811885.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Chlamydia
trachomatis D-EC]
gi|385244919|ref|YP_005812763.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Chlamydia
trachomatis D-LC]
gi|296437320|gb|ADH19490.1| translation initiation factor IF-3 [Chlamydia trachomatis G/11222]
gi|297748962|gb|ADI51508.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Chlamydia
trachomatis D-EC]
gi|297749842|gb|ADI52520.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Chlamydia
trachomatis D-LC]
Length = 198
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PPVCKIMD+ K
Sbjct: 29 RINRQIRAPRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSEPPVCKIMDYGKY 88
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 89 RYDVTKKEKDSKKAQHQVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 143
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 144 MFRGRELAYPEHGYKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 188
>gi|258654266|ref|YP_003203422.1| translation initiation factor IF-3 [Nakamurella multipartita DSM
44233]
gi|258557491|gb|ACV80433.1| translation initiation factor IF-3 [Nakamurella multipartita DSM
44233]
Length = 227
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRLV EG +V V EAL +A+ DLVEV A PPVCK+MD+ K
Sbjct: 50 PRINDRIRVPEVRLVGSEGEQVGIVPIGEALRMAQEADLDLVEVAPDARPPVCKLMDYGK 109
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ K ++ A+ +T+ KE++ KI+ D + K V R + G +VK
Sbjct: 110 FKYESAQKARE-ARRNQVLTV----IKEMKLRPKIDSHDYETKKGHVVRFLKAGDKVKVT 164
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL + ++ VES P
Sbjct: 165 IMFRGREQSRPELGFRLLQRLSADVAELGFVESAP 199
>gi|317487454|ref|ZP_07946241.1| translation initiation factor IF-3 [Bilophila wadsworthia 3_1_6]
gi|345889771|ref|ZP_08840755.1| translation initiation factor IF-3 [Bilophila sp. 4_1_30]
gi|316921313|gb|EFV42612.1| translation initiation factor IF-3 [Bilophila wadsworthia 3_1_6]
gi|345039249|gb|EGW43596.1| translation initiation factor IF-3 [Bilophila sp. 4_1_30]
Length = 178
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 101/186 (54%), Gaps = 12/186 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N++I A+ +R++ EG + ++ R+EA+A+A+ DLVEV A+PPVC++MD+ K
Sbjct: 2 RRNEQIRARELRVIGPEGEQLGILGRNEAIAMAKEHGLDLVEVAATADPPVCRVMDYGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ + K+++ K ++ + + KE++ K + D + K +KR ++ G RVK
Sbjct: 62 KYETQKKKQEAKKRQTVVQI-----KEIKVRPKTDDHDFETKVRHIKRFLEDGDRVKVTV 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKK 258
G++ +D G L R+I +D+ VE P E + ++ V +KK G +
Sbjct: 117 FFRGREIVHKDRGLSILERVIADTKDVGKVEQEPRAEGRTLQMLLTPV----AKKSGAQD 172
Query: 259 LKAVGD 264
A D
Sbjct: 173 APAQED 178
>gi|310287136|ref|YP_003938394.1| protein translation Initiation Factor 3 [Bifidobacterium bifidum
S17]
gi|311063999|ref|YP_003970724.1| protein translation initiation factor 3 (IF-3) InfC
[Bifidobacterium bifidum PRL2010]
gi|390936489|ref|YP_006394048.1| translation initiation factor IF-3 [Bifidobacterium bifidum BGN4]
gi|421734409|ref|ZP_16173482.1| translation initiation factor IF-3 [Bifidobacterium bifidum LMG
13195]
gi|309251072|gb|ADO52820.1| infC Bacterial Protein Translation Initiation Factor 3
[Bifidobacterium bifidum S17]
gi|310866318|gb|ADP35687.1| InfC Bacterial Protein Translation Initiation Factor 3 (IF-3)
[Bifidobacterium bifidum PRL2010]
gi|389890102|gb|AFL04169.1| translation initiation factor IF-3 [Bifidobacterium bifidum BGN4]
gi|407077700|gb|EKE50533.1| translation initiation factor IF-3 [Bifidobacterium bifidum LMG
13195]
Length = 231
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 11 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D ++K V R ++ G +VK
Sbjct: 71 FKYNEKIKAREARRNQS-----TAEIKEIRFRLKIDDHDFEVKKGHVVRFLNGGDKVKVT 125
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL +E+ VES P E
Sbjct: 126 IMLRG-REQSRPIGGVELLQRLAADVEEYGTVESRPKQE 163
>gi|154488867|ref|ZP_02029716.1| hypothetical protein BIFADO_02175 [Bifidobacterium adolescentis
L2-32]
gi|154083004|gb|EDN82049.1| translation initiation factor IF-3 [Bifidobacterium adolescentis
L2-32]
Length = 232
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRL+ G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 11 PRINDEIRVSQVRLIGPNGEQVGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D +K V R ++ G +VK
Sbjct: 71 YKYNEKIKAREARRNQST-----AEIKEIRFRLKIDDHDFDVKKGHVVRFLNGGDKVKVT 125
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL +E+ VE P E
Sbjct: 126 IMLRG-REQSRPIGGVELLQRLASEVEEYGTVEFAPKQE 163
>gi|118580722|ref|YP_901972.1| translation initiation factor IF-3 [Pelobacter propionicus DSM
2379]
gi|118503432|gb|ABK99914.1| bacterial translation initiation factor 3 (bIF-3) [Pelobacter
propionicus DSM 2379]
Length = 154
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+S +A LA Q DLVEV A PPVC+IMD+ K KYQ+ K+++ K ++ +
Sbjct: 11 VISLSKARELAEQQQLDLVEVSPTATPPVCRIMDYGKFKYQQSKKQQESRKKQAHV---- 66
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KE++ K + DL K V+R +++G + K + G++ D+G + R
Sbjct: 67 -EVKEIKLRPKTDDHDLMFKVKHVRRFLEEGNKAKVTLVFRGREITHMDIGRAVIQRFAA 125
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+EDI+++E+ P V+ + Y I+
Sbjct: 126 ELEDIAIIETQPRVDGRNMYMIV 148
>gi|395778940|ref|ZP_10459451.1| translation initiation factor IF-3 [Bartonella elizabethae
Re6043vi]
gi|423714788|ref|ZP_17689012.1| translation initiation factor IF-3 [Bartonella elizabethae F9251]
gi|395417115|gb|EJF83467.1| translation initiation factor IF-3 [Bartonella elizabethae
Re6043vi]
gi|395431007|gb|EJF97035.1| translation initiation factor IF-3 [Bartonella elizabethae F9251]
Length = 172
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG VV+ EALA+A DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPHVQLINDEGQHQGVVAIQEALAMAAEAGLDLVEIVPNAEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K V R +D G +
Sbjct: 65 DLGKLKYQTQKKAAETRKKQKVIEI-----KEIKMRPNVDVHDYGVKLRAVHRFIDHGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +E P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIELEPKLEGRQIMMVI 169
>gi|357634057|ref|ZP_09131935.1| Translation initiation factor IF-3 [Desulfovibrio sp. FW1012B]
gi|357582611|gb|EHJ47944.1| Translation initiation factor IF-3 [Desulfovibrio sp. FW1012B]
Length = 180
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 8/169 (4%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S PR N +I A+ VR++ D+G +V + EAL +A+ DLVEV A PPVC+IMD
Sbjct: 6 SSDPRCNHRIRAREVRVIADDGEQVGIIPTSEALRMAQEKGLDLVEVAPNAEPPVCRIMD 65
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F + KYQ++ K ++ K + + L KE++ K ++ D Q K ++R +++G R
Sbjct: 66 FGRFKYQQQKKLQEARKKSTTVLL-----KEIKVRPKTDEHDYQTKLKHIRRFLEEGDRC 120
Query: 196 KCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
K G++ +D G L R++ + + + VE P E + ++
Sbjct: 121 KVTVFFRGREIVHKDRGLIILHRVVADLGETAKVEQEPRTEGRMMTMLL 169
>gi|451338445|ref|ZP_21908977.1| Translation initiation factor 3 [Amycolatopsis azurea DSM 43854]
gi|449418885|gb|EMD24447.1| Translation initiation factor 3 [Amycolatopsis azurea DSM 43854]
Length = 222
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S R+ND+I VRLV G +V V +AL LA+ DLVEV +A PPVCK+MD
Sbjct: 33 SSETRINDRIRVPEVRLVGPAGEQVGIVRIEDALRLAQENDLDLVEVAPQARPPVCKLMD 92
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K KY+ K ++ ++ +T+ KE + KI+Q D + K V R + G +V
Sbjct: 93 FGKFKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDQHDYETKKGHVSRFLAAGNKV 147
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L +L D + ++ VES P
Sbjct: 148 KVTIMFRGREQSRPELGFRLLQKLADEVTELGFVESSP 185
>gi|433455341|ref|ZP_20413425.1| translation initiation factor IF-3 [Arthrobacter crystallopoietes
BAB-32]
gi|432197728|gb|ELK54093.1| translation initiation factor IF-3 [Arthrobacter crystallopoietes
BAB-32]
Length = 312
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +AL LA DLVEV +A PPVCK+MDF K KY+ +K ++ K +++ L
Sbjct: 11 IVRIEDALRLAAESDLDLVEVAPQAKPPVCKLMDFGKYKYEAAVKAREARKNQTNTVL-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE+RF KI++ D + K R + G +VK M G++++ ++G L + D
Sbjct: 69 ---KEIRFRLKIDKHDYETKRGHALRFLGAGDKVKAMIQFRGREQQRPEMGIRLLQKFAD 125
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVK 247
+ ++ VES P ++ + +I +K
Sbjct: 126 DVAEVGAVESSPRIDGRNMVMVIGPLK 152
>gi|50955434|ref|YP_062722.1| translation initiation factor IF-3 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951916|gb|AAT89617.1| translation initiation factor IF-3 [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 268
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
S PR ND+I VRLV G +V V A+ LA+ DLVEV + PPV KIMD+
Sbjct: 51 SEPRTNDRIRVPEVRLVGPSGEQVGVVKIEVAIRLAQEADLDLVEVAPNSKPPVAKIMDY 110
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ K K+ + +++ L KEVRF KI++ D + K + + G +VK
Sbjct: 111 GKFKYEAAQKAKEARRNQANTIL-----KEVRFRLKIDKHDYETKRKRAEGFLQAGDKVK 165
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
M L G+++ + G L R + + ++ VES P ++ + II
Sbjct: 166 AMILFRGREQSRPEQGVRLLQRFAEDVAELGTVESNPTIDGRNMVMII 213
>gi|223765|prf||0910186A initiation factor IF3
Length = 171
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRL+ G + + S+ EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 6 INEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFR 65
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 66 FEQQKKEKEARKKQKVINV-----KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 120
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L RL + DI+VVE+ P ++ + + ++
Sbjct: 121 FKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFLVL 164
>gi|308068135|ref|YP_003869740.1| translation initiation factor IF-3 [Paenibacillus polymyxa E681]
gi|305857414|gb|ADM69202.1| Translation initiation factor IF-3 [Paenibacillus polymyxa E681]
Length = 165
Score = 80.9 bits (198), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I + VRLV G ++ EAL +A DLV V +A PPVC+IMD+ K +
Sbjct: 2 INDEIRVREVRLVGANGEQIGITPTREALQMAIDANLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q K V + +++G +VKC
Sbjct: 62 YEQQKKEKEARKNQKIV-----DIKEVWFRSNIEEHDYQTKFRNVVKFLNEGDKVKCSVR 116
Query: 201 PVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ ++G + + L + D+ VE P +E + I+
Sbjct: 117 FRGREITHANVGQKILERVKLEVADLCTVERQPKLEGRSMIMIL 160
>gi|124213|sp|P03000.2|IF3_BACST RecName: Full=Translation initiation factor IF-3
gi|580890|emb|CAA34312.1| unnamed protein product [Geobacillus stearothermophilus]
Length = 172
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRL+ G + + S+ EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 7 INEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFR 66
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 67 FEQQKKEKEARKKQKVINV-----KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 121
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L RL + DI+VVE+ P ++ + + ++
Sbjct: 122 FKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFLVL 165
>gi|84687222|ref|ZP_01015103.1| translation initiation factor [Maritimibacter alkaliphilus
HTCC2654]
gi|84664810|gb|EAQ11293.1| translation initiation factor [Maritimibacter alkaliphilus
HTCC2654]
Length = 164
Score = 80.9 bits (198), Expect = 1e-12, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI A +RL+ EG V VS + LA DLVE+ A PPVCKIMDF K K
Sbjct: 1 MNEKIRAPEIRLIGAEGENVGVVSPQRGMELAEQAGLDLVEISPNATPPVCKIMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ + +E + K + I + KEV+F + D +K V + ++KG +VK
Sbjct: 61 YETQKREAEARKKQKTI-----EVKEVKFRPNTDVHDYDVKMKNVVKFLEKGDKVKVTLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + +++I VE+ P +E +Q +I
Sbjct: 116 FRGREMAHQNLGRDLLERVAEDVKEIGKVENMPKMEGRQMIMMI 159
>gi|381211880|ref|ZP_09918951.1| translation initiation factor IF-3 [Lentibacillus sp. Grbi]
Length = 167
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI A+ VRL+ G + V SR+EAL +A+ DLV V A PPVC+IM++ K +
Sbjct: 3 VNEKIRAREVRLIDSNGDQLGVKSRNEALDIAQKRDLDLVLVAPNAKPPVCRIMNYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + I + KEVRF+ I + D K ++ + KG +VK
Sbjct: 63 YEQQKKEKEARKKQKVI-----NVKEVRFTPGIGEHDFNTKLKNARKFLSKGDKVKASVR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G+ +DLG L RL + D++ +ES +E + + ++ +K
Sbjct: 118 FRGRAITHKDLGREVLDRLAEETNDVATIESKAKMEGRNMFMMLAPIK 165
>gi|425735476|ref|ZP_18853790.1| translation initiation factor IF-3 [Brevibacterium casei S18]
gi|425479882|gb|EKU47054.1| translation initiation factor IF-3 [Brevibacterium casei S18]
Length = 192
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V+ +AL LAR DLVEV +A PPV K+MD+ K KY+ K ++ K +++ L
Sbjct: 11 IVAIRKALDLAREADLDLVEVAPQAKPPVAKLMDYGKYKYESAQKAREARKNQANTAL-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE+RF KI++ D + K V R + G +VK M + G+++ ++G L+RL +
Sbjct: 69 ---KEIRFRLKIDEHDYETKKGHVTRFLSGGDKVKVMIMFRGREQSRPEMGIKLLNRLAE 125
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ ++ VES P V+ + +I
Sbjct: 126 DVSELGTVESAPRVDGRNMVMVI 148
>gi|408356313|ref|YP_006844844.1| translation initiation factor IF-3 [Amphibacillus xylanus NBRC
15112]
gi|407727084|dbj|BAM47082.1| translation initiation factor IF-3 [Amphibacillus xylanus NBRC
15112]
Length = 173
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + V SR EAL +A + DLV V A PPVC+IMD+ K +
Sbjct: 9 VNEGIRAREVRLIDSNGDQLGVKSRQEALEIAATRNLDLVLVAPNAKPPVCRIMDYGKYR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + I + KEVR S IE D K ++ ++KG +VK
Sbjct: 69 FEQQKKDREARKKQKVINI-----KEVRLSPGIEDHDFNTKLRNARKFLEKGDKVKVSIR 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +DLG L R+ + DIS VE P +E + + ++
Sbjct: 124 FRGRAITHKDLGRDVLERMAEACNDISTVEQKPKMEGRSMFLML 167
>gi|302389961|ref|YP_003825782.1| translation initiation factor 3 (bIF-3) [Thermosediminibacter
oceani DSM 16646]
gi|302200589|gb|ADL08159.1| bacterial translation initiation factor 3 (bIF-3)
[Thermosediminibacter oceani DSM 16646]
Length = 192
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 11/185 (5%)
Query: 62 FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDL 119
F ++ EKE +N +I A+ VR++ +G + ++ EAL +A+ Q DL
Sbjct: 7 FIYLSLEVNSITKEKELE---VNYEIKAREVRVIDVDGKQLGIMPLKEALKIAQERQLDL 63
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
V+V +A PPVCKIMD+ K KY++ +EK+ K + I++ KE+R S IE+ D Q
Sbjct: 64 VKVAPQAKPPVCKIMDYGKYKYEQSKREKEARKNQKVISI-----KEIRMSPNIEEHDFQ 118
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
++ R +D G +VK G++ LG L RL D +++ +VE P +E +
Sbjct: 119 VRVKNALRFLDDGNKVKVTIRFRGREITHTQLGEEVLKRLADSVKEKGIVEKPPVIEGRN 178
Query: 239 AYAII 243
I+
Sbjct: 179 MVMIL 183
>gi|323356733|ref|YP_004223129.1| translation initiation factor 3 (IF-3) [Microbacterium testaceum
StLB037]
gi|323273104|dbj|BAJ73249.1| translation initiation factor 3 (IF-3) [Microbacterium testaceum
StLB037]
Length = 236
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 10/196 (5%)
Query: 53 PNDFCNNVR--FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEA 108
P C +R F + ++E S PR N++I VRLV G +V V A
Sbjct: 2 PGGVCTPLRPRFHRIAAATTRTQEEFRISDPRTNERIRVPEVRLVGPNGEQVGIVRIEAA 61
Query: 109 LALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVR 168
L LA+ DLVEV + PPV KIMD+ K KY+ K K+ + +++ L KEVR
Sbjct: 62 LRLAQEADLDLVEVAPSSKPPVVKIMDYGKFKYEAAQKAKETRRNQANTVL-----KEVR 116
Query: 169 FSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSR-LIDLIEDISV 227
F KIE D K + + G +VK M L G+++ + G L R + + +
Sbjct: 117 FRLKIEAHDYITKLKRAEGFLQAGDKVKAMILFRGREQSRPEQGVRLLRKFAEDVAEFGT 176
Query: 228 VESGPHVERKQAYAII 243
VES P ++ + ++
Sbjct: 177 VESNPTIDGRNMVMVV 192
>gi|406919875|gb|EKD58042.1| hypothetical protein ACD_57C00042G0007 [uncultured bacterium]
Length = 192
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
+LN +I+A+ +R++ +EG ++ +S EAL A+S + DLVE+ A PPV KI+DF K
Sbjct: 25 KLNHQISAKELRVIDEEGKQIGILSLSEALKKAQSAEADLVEIAPDAQPPVAKIIDFKKF 84
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y +E K+K+ K K+ + KEVRFS I + DLQ + VK+ + +G+ VK
Sbjct: 85 RYLEEKKQKEARK-----HTKQTELKEVRFSPFIGEHDLQTALEKVKKFIAEGHLVKISV 139
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ + G L R++ + I+ E E ++ IIR VK
Sbjct: 140 IFKGRQMAHTEFGPKLLDRIMTDLSQIAQSEREARFEGRRFVTIIRPVK 188
>gi|114707132|ref|ZP_01440030.1| translation initiation factor IF-3 [Fulvimarina pelagi HTCC2506]
gi|114537328|gb|EAU40454.1| translation initiation factor IF-3 [Fulvimarina pelagi HTCC2506]
Length = 217
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR N +I V+L+ EG V+ EAL LA DLVE+ ANPPVCKI+D
Sbjct: 52 GPRSNREIRVPTVQLIDSEGENRGQVATSEALTLAEDAGLDLVEIVPNANPPVCKILDLG 111
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+ + K + K + I + KEV+ I+ D + K V+R D G +VK
Sbjct: 112 KLKYENQKKAAEARKRQKTI-----EVKEVKMRPNIDDHDYETKMKAVRRFFDDGDKVKV 166
Query: 198 MALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L+R+ + +IS VE+ P +E +Q ++
Sbjct: 167 TLRFRGREMAHQELGMRLLNRVREETNEISKVEAEPKLEGRQMMMVL 213
>gi|24211784|sp|Q8PJE2.1|IF3_XANAC RecName: Full=Translation initiation factor IF-3
Length = 182
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V +SR EALA A DLVE+ +A+PPVCKIMDF K
Sbjct: 17 RKNQEIRVPRVRVIGSDGEMVGVLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKF 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ K+ + AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK
Sbjct: 77 KFEQQ-KKANEAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNI 131
Query: 200 LPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I DL +DI V+ES P +E +Q +I
Sbjct: 132 RFRGREMSHQELGREMAARIEADLGDDI-VIESRPRLEGRQMVMMI 176
>gi|374322930|ref|YP_005076059.1| translation initiation factor IF-3 [Paenibacillus terrae HPL-003]
gi|357201939|gb|AET59836.1| translation initiation factor IF-3 [Paenibacillus terrae HPL-003]
Length = 165
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I + VRLV G ++ EAL +A DLV V +A PPVC+IMD+ K +
Sbjct: 2 INDEIRVREVRLVGANGEQIGITPTREALQMAIDANLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q K V + +++G +VKC
Sbjct: 62 YEQQKKEKEARKNQKIV-----DIKEVWFRSNIEEHDYQTKFRNVVKFLNEGDKVKCSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L R+ + D+ VE P +E + I+
Sbjct: 117 FRGREITHANVGQKILERVKVEVADLCTVERQPKLEGRSMIMIL 160
>gi|291547119|emb|CBL20227.1| bacterial translation initiation factor 3 (bIF-3) [Ruminococcus sp.
SR1/5]
Length = 164
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 12/158 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ +G + +VS EA+A A+ DLV++ +A PPVCKI+D+ K +
Sbjct: 2 INEQIRDREVRLIGPDGAQLGIVSAREAMAKAQEAGLDLVKIAPQAKPPVCKIIDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ KEK+ K + I D KEVR S I+ DL+ K + ++ + KG RVK
Sbjct: 62 YELARKEKEARKKQKTI-----DVKEVRLSPNIDTNDLKTKVNAARKFLSKGDRVKVTLR 116
Query: 201 PVGKKEETEDLGG---YLSRLIDLIEDISVVESGPHVE 235
G+ E + L DL+ DI+ VE P VE
Sbjct: 117 FRGR--EMAHMSSSRHVLDDFADLLSDIATVEKAPKVE 152
>gi|56697480|ref|YP_167848.1| translation initiation factor IF-3 [Ruegeria pomeroyi DSS-3]
gi|81676179|sp|Q5LQ58.1|IF3_SILPO RecName: Full=Translation initiation factor IF-3
gi|56679217|gb|AAV95883.1| translation initiation factor IF-3 [Ruegeria pomeroyi DSS-3]
Length = 182
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+NDKI A +RL+ +G V H +A+A+A DLVE+ A PPVCKIMDF
Sbjct: 14 TGPRVNDKIRASEIRLIGADGENVGVVHPAKAMAMAEEAGLDLVEISPNATPPVCKIMDF 73
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KEV+F + D ++K V + ++ G +VK
Sbjct: 74 GKYKYEQQKRESE-ARKKQKII----EVKEVKFRPNTDTHDYEVKMRNVYKFLENGDKVK 128
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + ++++ +E+ P +E +Q +I
Sbjct: 129 VTLRFRGREMAHQNLGRELLERVAEDVKEMGKIENMPKMEGRQMIMMI 176
>gi|32265942|ref|NP_859974.1| translation initiation factor IF-3 [Helicobacter hepaticus ATCC
51449]
gi|39931233|sp|Q7VJ08.1|IF3_HELHP RecName: Full=Translation initiation factor IF-3
gi|32261991|gb|AAP77040.1| translation initiation factor IF3 [Helicobacter hepaticus ATCC
51449]
Length = 174
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++I+ + VR V D G + ++S EAL LA DLV + A PPVCKIMD+ K +
Sbjct: 8 LNEEIDFKEVRCVSDNGEVYGIISSKEALNLAHKAGLDLVLISPNAKPPVCKIMDYGKFR 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ E K+K+ K + I + KE++ S +I Q D+ K ++ G VK
Sbjct: 68 YQAEKKQKEARKKQKQIEI-----KEIKLSTQIAQNDINYKVKHAIEFLESGKHVKFKVF 122
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
++ D G L ++ ++EDI++ E P +E K +V + P KK
Sbjct: 123 LKQRELNIPDAGMDTLGKVAVMLEDIAIAEKEPKLEGKHL-----NVLYVPKKK 171
>gi|206969668|ref|ZP_03230622.1| translation initiation factor IF-3 [Bacillus cereus AH1134]
gi|218235389|ref|YP_002369370.1| translation initiation factor IF-3 [Bacillus cereus B4264]
gi|218899728|ref|YP_002448139.1| translation initiation factor IF-3 [Bacillus cereus G9842]
gi|228903092|ref|ZP_04067228.1| Translation initiation factor IF-3 [Bacillus thuringiensis IBL
4222]
gi|296505047|ref|YP_003666747.1| translation initiation factor IF-3 [Bacillus thuringiensis BMB171]
gi|365158643|ref|ZP_09354835.1| translation initiation factor IF-3 [Bacillus sp. 7_6_55CFAA_CT2]
gi|384188649|ref|YP_005574545.1| translation initiation factor IF-3 [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402563912|ref|YP_006606636.1| translation initiation factor IF-3 [Bacillus thuringiensis HD-771]
gi|410676971|ref|YP_006929342.1| translation initiation factor IF-3 [Bacillus thuringiensis Bt407]
gi|423358339|ref|ZP_17335842.1| translation initiation factor IF-3 [Bacillus cereus VD022]
gi|423386069|ref|ZP_17363325.1| translation initiation factor IF-3 [Bacillus cereus BAG1X1-2]
gi|423411640|ref|ZP_17388760.1| translation initiation factor IF-3 [Bacillus cereus BAG3O-2]
gi|423426700|ref|ZP_17403731.1| translation initiation factor IF-3 [Bacillus cereus BAG3X2-2]
gi|423432573|ref|ZP_17409577.1| translation initiation factor IF-3 [Bacillus cereus BAG4O-1]
gi|423438009|ref|ZP_17414990.1| translation initiation factor IF-3 [Bacillus cereus BAG4X12-1]
gi|423502750|ref|ZP_17479342.1| translation initiation factor IF-3 [Bacillus cereus HD73]
gi|423527575|ref|ZP_17504020.1| translation initiation factor IF-3 [Bacillus cereus HuB1-1]
gi|423560917|ref|ZP_17537193.1| translation initiation factor IF-3 [Bacillus cereus MSX-A1]
gi|423582786|ref|ZP_17558897.1| translation initiation factor IF-3 [Bacillus cereus VD014]
gi|423584898|ref|ZP_17560985.1| translation initiation factor IF-3 [Bacillus cereus VD045]
gi|423612750|ref|ZP_17588611.1| translation initiation factor IF-3 [Bacillus cereus VD107]
gi|423631290|ref|ZP_17607037.1| translation initiation factor IF-3 [Bacillus cereus VD154]
gi|423634546|ref|ZP_17610199.1| translation initiation factor IF-3 [Bacillus cereus VD156]
gi|423640356|ref|ZP_17615974.1| translation initiation factor IF-3 [Bacillus cereus VD166]
gi|423650472|ref|ZP_17626042.1| translation initiation factor IF-3 [Bacillus cereus VD169]
gi|423657514|ref|ZP_17632813.1| translation initiation factor IF-3 [Bacillus cereus VD200]
gi|434377728|ref|YP_006612372.1| translation initiation factor IF-3 [Bacillus thuringiensis HD-789]
gi|452201044|ref|YP_007481125.1| Translation initiation factor 3 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|206735356|gb|EDZ52524.1| translation initiation factor IF-3 [Bacillus cereus AH1134]
gi|218163346|gb|ACK63338.1| translation initiation factor IF-3 [Bacillus cereus B4264]
gi|218545941|gb|ACK98335.1| translation initiation factor IF-3 [Bacillus cereus G9842]
gi|228856501|gb|EEN01025.1| Translation initiation factor IF-3 [Bacillus thuringiensis IBL
4222]
gi|296326099|gb|ADH09027.1| translation initiation factor IF-3 [Bacillus thuringiensis BMB171]
gi|326942358|gb|AEA18254.1| translation initiation factor IF-3 [Bacillus thuringiensis serovar
chinensis CT-43]
gi|363626516|gb|EHL77499.1| translation initiation factor IF-3 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401086026|gb|EJP94258.1| translation initiation factor IF-3 [Bacillus cereus VD022]
gi|401104965|gb|EJQ12933.1| translation initiation factor IF-3 [Bacillus cereus BAG3O-2]
gi|401110266|gb|EJQ18175.1| translation initiation factor IF-3 [Bacillus cereus BAG3X2-2]
gi|401115706|gb|EJQ23553.1| translation initiation factor IF-3 [Bacillus cereus BAG4O-1]
gi|401119622|gb|EJQ27433.1| translation initiation factor IF-3 [Bacillus cereus BAG4X12-1]
gi|401202762|gb|EJR09612.1| translation initiation factor IF-3 [Bacillus cereus MSX-A1]
gi|401211601|gb|EJR18348.1| translation initiation factor IF-3 [Bacillus cereus VD014]
gi|401235090|gb|EJR41563.1| translation initiation factor IF-3 [Bacillus cereus VD045]
gi|401244738|gb|EJR51097.1| translation initiation factor IF-3 [Bacillus cereus VD107]
gi|401263863|gb|EJR69979.1| translation initiation factor IF-3 [Bacillus cereus VD154]
gi|401280525|gb|EJR86445.1| translation initiation factor IF-3 [Bacillus cereus VD156]
gi|401281272|gb|EJR87185.1| translation initiation factor IF-3 [Bacillus cereus VD166]
gi|401281631|gb|EJR87537.1| translation initiation factor IF-3 [Bacillus cereus VD169]
gi|401289070|gb|EJR94791.1| translation initiation factor IF-3 [Bacillus cereus VD200]
gi|401634720|gb|EJS52483.1| translation initiation factor IF-3 [Bacillus cereus BAG1X1-2]
gi|401792564|gb|AFQ18603.1| translation initiation factor IF-3 [Bacillus thuringiensis HD-771]
gi|401876285|gb|AFQ28452.1| translation initiation factor IF-3 [Bacillus thuringiensis HD-789]
gi|402452944|gb|EJV84754.1| translation initiation factor IF-3 [Bacillus cereus HuB1-1]
gi|402459989|gb|EJV91717.1| translation initiation factor IF-3 [Bacillus cereus HD73]
gi|409176100|gb|AFV20405.1| translation initiation factor IF-3 [Bacillus thuringiensis Bt407]
gi|452106437|gb|AGG03377.1| Translation initiation factor 3 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 166
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 2 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 62 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S VES P +E + + ++
Sbjct: 117 FKGRAITHKEIGQRVLDRFSEACAEVSTVESKPKMEGRSMFLVL 160
>gi|30022650|ref|NP_834281.1| translation initiation factor IF-3 [Bacillus cereus ATCC 14579]
gi|228910398|ref|ZP_04074213.1| Translation initiation factor IF-3 [Bacillus thuringiensis IBL 200]
gi|228923318|ref|ZP_04086606.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228941753|ref|ZP_04104300.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954843|ref|ZP_04116863.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960843|ref|ZP_04122478.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228967671|ref|ZP_04128692.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228974677|ref|ZP_04135243.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981271|ref|ZP_04141571.1| Translation initiation factor IF-3 [Bacillus thuringiensis Bt407]
gi|229048282|ref|ZP_04193850.1| Translation initiation factor IF-3 [Bacillus cereus AH676]
gi|229072076|ref|ZP_04205285.1| Translation initiation factor IF-3 [Bacillus cereus F65185]
gi|229081827|ref|ZP_04214319.1| Translation initiation factor IF-3 [Bacillus cereus Rock4-2]
gi|229112039|ref|ZP_04241582.1| Translation initiation factor IF-3 [Bacillus cereus Rock1-15]
gi|229129858|ref|ZP_04258824.1| Translation initiation factor IF-3 [Bacillus cereus BDRD-Cer4]
gi|229147133|ref|ZP_04275492.1| Translation initiation factor IF-3 [Bacillus cereus BDRD-ST24]
gi|229152769|ref|ZP_04280952.1| Translation initiation factor IF-3 [Bacillus cereus m1550]
gi|229180893|ref|ZP_04308228.1| Translation initiation factor IF-3 [Bacillus cereus 172560W]
gi|229192775|ref|ZP_04319733.1| Translation initiation factor IF-3 [Bacillus cereus ATCC 10876]
gi|449091527|ref|YP_007423968.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|38372267|sp|Q812P6.1|IF3_BACCR RecName: Full=Translation initiation factor IF-3
gi|29898208|gb|AAP11482.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Bacillus
cereus ATCC 14579]
gi|228590614|gb|EEK48475.1| Translation initiation factor IF-3 [Bacillus cereus ATCC 10876]
gi|228602450|gb|EEK59936.1| Translation initiation factor IF-3 [Bacillus cereus 172560W]
gi|228630589|gb|EEK87235.1| Translation initiation factor IF-3 [Bacillus cereus m1550]
gi|228636382|gb|EEK92853.1| Translation initiation factor IF-3 [Bacillus cereus BDRD-ST24]
gi|228653549|gb|EEL09421.1| Translation initiation factor IF-3 [Bacillus cereus BDRD-Cer4]
gi|228671362|gb|EEL26663.1| Translation initiation factor IF-3 [Bacillus cereus Rock1-15]
gi|228701415|gb|EEL53909.1| Translation initiation factor IF-3 [Bacillus cereus Rock4-2]
gi|228711010|gb|EEL62976.1| Translation initiation factor IF-3 [Bacillus cereus F65185]
gi|228723007|gb|EEL74384.1| Translation initiation factor IF-3 [Bacillus cereus AH676]
gi|228778471|gb|EEM26738.1| Translation initiation factor IF-3 [Bacillus thuringiensis Bt407]
gi|228785080|gb|EEM33093.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792047|gb|EEM39628.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228798865|gb|EEM45844.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228804832|gb|EEM51431.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228817965|gb|EEM64043.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228836272|gb|EEM81625.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228849164|gb|EEM94003.1| Translation initiation factor IF-3 [Bacillus thuringiensis IBL 200]
gi|449025284|gb|AGE80447.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 167
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S VES P +E + + ++
Sbjct: 118 FKGRAITHKEIGQRVLDRFSEACAEVSTVESKPKMEGRSMFLVL 161
>gi|451941352|ref|YP_007461989.1| translation initiation factor IF-3 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900739|gb|AGF75201.1| translation initiation factor IF-3 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 172
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG +V+ EALA+A DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPRVQLINDEGQHQGIVAIQEALAMAADAGLDLVEIVPNAEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K + R + G +
Sbjct: 65 DLGKLKYQTQKKAAETRKKQKVIEI-----KEIKMRPNVDVHDYGVKLKAIHRFIGNGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L+R+ + +I+ +ES P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLKLLNRVKEDTSEIAKIESEPKLEGRQMMMVI 169
>gi|357013244|ref|ZP_09078243.1| InfC [Paenibacillus elgii B69]
Length = 166
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRL+ G ++ + EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 2 INDEIRAREVRLIDANGEQLGIKPIREALQIALDQNLDLVNVAPTAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ + KEK+ K + + L KE+R S I++ D Q K V + ++ G +VK
Sbjct: 62 YETQKKEKEARKNQKIVEL-----KEIRLSATIDEHDFQTKLRNVVKFLNDGDKVKLSVR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ D+G L R+ +E++ +VE P +E + I+
Sbjct: 117 FRGREIAHADIGQRVLERMAAEVEELCIVERRPKLEGRSMIMIL 160
>gi|345302491|ref|YP_004824393.1| translation initiation factor IF-3 [Rhodothermus marinus
SG0.5JP17-172]
gi|345111724|gb|AEN72556.1| Translation initiation factor IF-3 [Rhodothermus marinus
SG0.5JP17-172]
Length = 180
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 12/174 (6%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N++I A VR+V EG H + +AL +AR DLVE+ ANPPVCKI+D+ K +
Sbjct: 16 RVNEEIRAPRVRVVDPEGNHGIYDLKKALEMARQRGLDLVEIAPNANPPVCKIIDYGKFR 75
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ + + KE+RF + D + K ++ ++ G++VK
Sbjct: 76 YEQQKKEKEARRKQL-----AQQIKEIRFRPHTDTHDFEFKTRHARQFLEDGHKVKAWVQ 130
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G+ +D G L R I+ ++DI+ ++ P +E ++ I+ P+KK
Sbjct: 131 FRGRDIIYQDAGLDLLRRFIEALQDIAKIDQPPKMEGRRMTVIL-----SPTKK 179
>gi|374299175|ref|YP_005050814.1| translation initiation factor IF-3 [Desulfovibrio africanus str.
Walvis Bay]
gi|332552111|gb|EGJ49155.1| Translation initiation factor IF-3 [Desulfovibrio africanus str.
Walvis Bay]
Length = 175
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VR++ D+G + V++ +AL A+ DLVEV + PPVC+IMD+ K
Sbjct: 9 RVNRQIRARDVRVIADDGSQLGVMATLDALRTAQEQGLDLVEVAPNSEPPVCRIMDYGKY 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+++ K + K S + + KE++F K ++ D Q K ++R ++ G R K +
Sbjct: 69 KYEQQKKTQGARKKSSQVQI-----KEIKFRPKTDEHDYQTKVKHIRRFIEDGDRCKAVI 123
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ +D G L R+ + ++DI+ VE P E
Sbjct: 124 FFRGREIVHKDRGLVILKRVAEDLKDIAKVEQEPQFE 160
>gi|313888399|ref|ZP_07822067.1| translation initiation factor IF-3 [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845596|gb|EFR32989.1| translation initiation factor IF-3 [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 222
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E ++N++I + VRLV DEG++ VVSR++A+ LA S + DLV V A PPVC+IM
Sbjct: 47 EIKELQINEEIREKEVRLVDDEGNQLGVVSRNQAIDLAISKKLDLVNVAPNAKPPVCRIM 106
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K +Y++E KEK+ K + I + KE+RFS IE DL KA+ + G R
Sbjct: 107 DYGKYRYEQEKKEKEARKKQKVINV-----KELRFSPNIEDHDLNTKANRAIDFLKNGDR 161
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VK G++ DLG L + DLI + VV+ P +E
Sbjct: 162 VKVSVRFRGREMGHTDLGREVLDKFYDLISEYGVVDKKPKME 203
>gi|308535278|ref|YP_002138800.2| translation initiation factor IF-3 [Geobacter bemidjiensis Bem]
gi|308052623|gb|ACH39004.2| translation initiation factor IF-3 [Geobacter bemidjiensis Bem]
Length = 173
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A+ VR+V E + ++ EALALA S Q DLVEV A PPVC+IMD+ K K
Sbjct: 8 INQTIRAKEVRVVGAESEQLGILPLREALALAESQQLDLVEVSPTAVPPVCRIMDYGKFK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K + K + + L KEV+ K + DL+ K V+R +++G + K +
Sbjct: 68 YQQAKKLAEAKKKQVQVEL-----KEVKLRPKTDTHDLEFKVKHVRRFLEEGNKAKITVV 122
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L + + DI++VE +E + + I+
Sbjct: 123 FRGREITHQELGMAALEKFASELADIALVEVRQKMEGRSMFMIV 166
>gi|310640924|ref|YP_003945682.1| translation initiation factor if-3 [Paenibacillus polymyxa SC2]
gi|375307714|ref|ZP_09773001.1| translation initiation factor if-3 [Paenibacillus sp. Aloe-11]
gi|386040023|ref|YP_005958977.1| translation initiation factor IF-3 [Paenibacillus polymyxa M1]
gi|309245874|gb|ADO55441.1| translation initiation factor IF-3 [Paenibacillus polymyxa SC2]
gi|343096061|emb|CCC84270.1| translation initiation factor IF-3 [Paenibacillus polymyxa M1]
gi|375080045|gb|EHS58266.1| translation initiation factor if-3 [Paenibacillus sp. Aloe-11]
Length = 165
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I + VRLV G ++ + EAL +A DLV V +A PPVC+IMD+ K +
Sbjct: 2 INDEIRVREVRLVGANGEQIGIKPTREALQMAIDANLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q K V + +++G +VKC
Sbjct: 62 YEQQKKEKEARKNQKIV-----DIKEVWFRSNIEEHDYQTKFRNVVKFLNEGDKVKCSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L R+ + D+ VE P +E + I+
Sbjct: 117 FRGREITHANVGQKILERVKTEVADLCTVERQPKLEGRSMIMIL 160
>gi|291300538|ref|YP_003511816.1| translation initiation factor IF-3 [Stackebrandtia nassauensis DSM
44728]
gi|290569758|gb|ADD42723.1| translation initiation factor IF-3 [Stackebrandtia nassauensis DSM
44728]
Length = 182
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 8/153 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV +G +V VS +AL LA + DLVEV A PPVCK+MD+ K K
Sbjct: 1 MNEQIRAREVRLVGPQGEQVGIVSLDKALQLAADVDLDLVEVAPNARPPVCKLMDYGKHK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ LK ++ + + + KE++ KI+ D + K V R + G +VK +
Sbjct: 61 YETALKAREARRNQQQTVI-----KEMKLRPKIDDHDYETKKGHVIRFLKAGDKVKITIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
G+++ +LG L++L + + D+ VVE+ P
Sbjct: 116 FRGREQSRPELGLRLLNKLGEEVSDLGVVEAAP 148
>gi|402298409|ref|ZP_10818104.1| translation initiation factor IF-3 [Bacillus alcalophilus ATCC
27647]
gi|401726382|gb|EJS99614.1| translation initiation factor IF-3 [Bacillus alcalophilus ATCC
27647]
Length = 167
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VR++ G + V ++ EAL +A+++ DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEGIRAREVRVIGANGDQIGVKTKQEALEMAQNVNLDLVCVAPTAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K+K+ K + I + KEVR S IE D K ++ ++KG +VK
Sbjct: 63 YEQQKKDKEARKKQKVINV-----KEVRLSPTIEDHDFNTKLRNARKFLEKGDKVKAAIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +G L RL EDI+VVES P +E + + I+
Sbjct: 118 FRGRAITHSQIGKVVLERLAKECEDIAVVESKPKMEGRSMFLIL 161
>gi|144899403|emb|CAM76267.1| Initiation factor 3 [Magnetospirillum gryphiswaldense MSR-1]
Length = 173
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+N +I+ + +RLV EG VVS + L +A DLVEV A+PPVCKI+
Sbjct: 6 KNDGPRVNREIDVRSIRLVGAEGEMIGVVSLRDGLVMAEEAGLDLVEVSPNADPPVCKIL 65
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K KY+ + K+ + K + I + KE++ I+ D +K +++ +++G +
Sbjct: 66 DYGKFKYEAQKKKAEAKKKQKVI-----EVKEIKLRPNIDDNDYGVKMRAMRKFLEEGDK 120
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ D +ED+ +E P +E +Q ++
Sbjct: 121 VKVTLRFRGRELAHQDLGMKVLERVRDDLEDLGKIEQVPKMEGRQMVMVV 170
>gi|258515612|ref|YP_003191834.1| translation initiation factor IF-3 [Desulfotomaculum acetoxidans
DSM 771]
gi|257779317|gb|ACV63211.1| translation initiation factor IF-3 [Desulfotomaculum acetoxidans
DSM 771]
Length = 164
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I + VR+V G++ +++ +A+ LA Q +LVE+ +A PPVC+IMD+ K K
Sbjct: 1 MNNSIRVREVRVVDANGNQLGIMATRDAMRLAEEKQLELVEIAPQAKPPVCRIMDYGKYK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ +EK+ K + I++ KEV+ IE+ D ++KA R + G +VK +
Sbjct: 61 YEQSKREKETRKKQRIISV-----KEVKLRPNIEEHDFEVKAKNAVRFLKDGDKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +LG L ++ + ++DI+ VE P +E K I+
Sbjct: 116 FRGREIVHTNLGQQLLVKMAEQVKDIATVERHPKLEGKNMIMIL 159
>gi|387133482|ref|YP_006299454.1| translation initiation factor IF-3 [Prevotella intermedia 17]
gi|386376330|gb|AFJ08493.1| translation initiation factor IF-3 [Prevotella intermedia 17]
Length = 229
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I+A+ VR+V + +V+ +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKMKLQYRVNEQIHAREVRVVSEGNAEVMPTRKALDIARKEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K D KE+RF + ++ D Q K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQV----------KQDIKEIRFGPQTDEHDYQFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKK 253
K G +KK
Sbjct: 169 SPKKAGITKK 178
>gi|350566969|ref|ZP_08935583.1| translation initiation factor IF3 [Peptoniphilus indolicus ATCC
29427]
gi|348659938|gb|EGY76653.1| translation initiation factor IF3 [Peptoniphilus indolicus ATCC
29427]
Length = 177
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + VRLV DEG++V V R AL +A + DLV V + PPVC+IMD+ K
Sbjct: 11 QINEEIRDKEVRLVDDEGNQVGVVPRSRALDMAFEKKLDLVNVSPNSKPPVCRIMDYGKY 70
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ KE+D K + I + KEVR + IE+ DL+ K K+ + G RVK
Sbjct: 71 KYEMIKKERDSKKKQRVINI-----KEVRLTPNIEKHDLETKVKHAKKFLSNGDRVKVAV 125
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVE 235
G++ ++G L R ++++ + V+ P +E
Sbjct: 126 RFRGREMGHTEIGKEVLDRFVEMVSESGTVDKKPKLE 162
>gi|187931726|ref|YP_001891711.1| translation initiation factor IF-3 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712635|gb|ACD30932.1| translation initiation factor IF-3 [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 170
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV +G + VVS +EALALA DLVE+ ANPPVC++MD
Sbjct: 7 INEQIKAKEVRLVGVDGQQIGVVSINEALALAEEADVDLVEMVANANPPVCRLMD----- 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y K L E+ + +A++ K+ KEV+ + D Q+K + + ++KG +VK
Sbjct: 62 YGKYLFEQGKKRAQAKKNQKQTQVKEVKLRPVTDVGDYQVKLRNLIKFLEKGDKVKVTLR 121
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ ++LG L R+ + + VVE P +E +Q ++ GP KK
Sbjct: 122 FRGREMSHKELGMEMLQRMANDAAEYGVVEHQPKLEGRQMIMVL-----GPKKK 170
>gi|30264645|ref|NP_847022.1| translation initiation factor IF-3 [Bacillus anthracis str. Ames]
gi|47778330|ref|YP_021465.2| translation initiation factor IF-3 [Bacillus anthracis str. 'Ames
Ancestor']
gi|65321943|ref|ZP_00394902.1| COG0290: Translation initiation factor 3 (IF-3) [Bacillus anthracis
str. A2012]
gi|375286569|ref|YP_005107008.1| translation initiation factor IF-3 [Bacillus cereus NC7401]
gi|30259320|gb|AAP28508.1| translation initiation factor IF-3 [Bacillus anthracis str. Ames]
gi|47552035|gb|AAT33940.2| translation initiation factor IF-3 [Bacillus anthracis str. 'Ames
Ancestor']
gi|358355096|dbj|BAL20268.1| translation initiation factor IF-3 [Bacillus cereus NC7401]
Length = 186
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 22 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 81
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 82 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 136
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 137 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 180
>gi|297623447|ref|YP_003704881.1| translation initiation factor IF-3 [Truepera radiovictrix DSM
17093]
gi|297164627|gb|ADI14338.1| translation initiation factor IF-3 [Truepera radiovictrix DSM
17093]
Length = 181
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 91/154 (59%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + VRL+ +G + ++ +AL LAR + DL V A PPV K+MD+ K
Sbjct: 9 KVNEQIRVRQVRLIGADGQQQGIMETRDALRLAREAELDLALVGEGAQPPVAKLMDYGKY 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+ + +EK+ A+ KS ++ + K ++F KI+ D + K + V+R + G++VK
Sbjct: 69 RYELQQQEKE-ARRKS----RQQEMKAIKFRVKIDDHDYETKVNHVRRFLKGGHKVKLTI 123
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L+R+ + DI+VVES P
Sbjct: 124 MFRGRERTHPELGQEILNRVASDVSDIAVVESAP 157
>gi|288553676|ref|YP_003425611.1| translation initiation factor IF-3 [Bacillus pseudofirmus OF4]
gi|288544836|gb|ADC48719.1| translation initiation factor IF-3 [Bacillus pseudofirmus OF4]
Length = 167
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + V S+ EAL +A+++ DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEGIRAREVRLIGANGDQIGVKSKQEALEMAQNVNLDLVCVAPAAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K+K+ K + I + KEVR S IE D K ++ ++KG +VK
Sbjct: 63 YEQQKKDKEARKKQKVINV-----KEVRLSPTIEDHDFNTKLRNARKFLEKGDKVKAAIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +G L RL ED++V+E+ P +E + + I+
Sbjct: 118 FRGRAITHSQIGRVVLERLAKECEDVAVIEAKPKMEGRSMFLIL 161
>gi|284045074|ref|YP_003395414.1| translation initiation factor IF-3 [Conexibacter woesei DSM 14684]
gi|283949295|gb|ADB52039.1| translation initiation factor IF-3 [Conexibacter woesei DSM 14684]
Length = 357
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCK 132
E++T+ R+N++I VRL+ ++G + ++ +AL +A+ DLVEV A PPVC+
Sbjct: 13 ERDTT--RINERIRVPEVRLIGEDGQQIGILKTADALRMAQERDLDLVEVAADARPPVCR 70
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
I+D+ K +Y++ K+K K + IT+ +E++F KI Q D K V R +
Sbjct: 71 ILDYSKYRYEQAQKQKAARKHQQQITI-----REIKFRPKIAQNDYDTKKGHVTRFLKHK 125
Query: 193 YRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+VK + G++ + G L RL + + D++VVE P
Sbjct: 126 DKVKVTIMFRGREVTHPERGQILLERLAEELADLAVVEQRP 166
>gi|421858805|ref|ZP_16291059.1| translation initiation factor 3 [Paenibacillus popilliae ATCC
14706]
gi|410831658|dbj|GAC41496.1| translation initiation factor 3 [Paenibacillus popilliae ATCC
14706]
Length = 165
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG ++ + EAL +A DLV V +A PPVC+IMD+ K +
Sbjct: 2 VNEEIRTKEVRLVGPEGEQIGIKPFREALQMAYDTNLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F I++ D Q K V + + +G +VKC
Sbjct: 62 YEQQKKEKEARKNQKTV-----DLKEVWFRANIDEHDFQTKLRNVLKFLREGDKVKCSVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ D+G L R++ ++ VE P +E + I+
Sbjct: 117 FRGREIAHSDIGKKVLDRVLVEANELCTVERLPKLEGRSMIMIL 160
>gi|325962863|ref|YP_004240769.1| translation initiation factor 3 (bIF-3) [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468950|gb|ADX72635.1| bacterial translation initiation factor 3 (bIF-3) [Arthrobacter
phenanthrenivorans Sphe3]
Length = 337
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV +A PPVCK+MDF K KY+ +K ++
Sbjct: 1 MRLVGPAGEQVGIVRIEDALRLAAESDLDLVEVAPQAKPPVCKLMDFGKYKYEAAVKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K +++ L KE+RF KI+ D + K R + G +VK M G++++
Sbjct: 61 ARKNQTNTVL-----KEIRFRLKIDTHDYETKRGHALRFLGAGDKVKAMIQFRGREQQRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++G L R + + ++ VVES P ++ + ++
Sbjct: 116 EMGIRLLQRFAEDVAEVGVVESSPRIDGRNMVMVV 150
>gi|374288720|ref|YP_005035805.1| translation initiation factor if-3 [Bacteriovorax marinus SJ]
gi|301167261|emb|CBW26843.1| translation initiation factor if-3 [Bacteriovorax marinus SJ]
Length = 198
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 11/158 (6%)
Query: 80 GPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+ND+I RL+ D+G + VVS +A +A L DLVEV A PPV K++D+
Sbjct: 14 GPRINDQIRISECRLIGDDGTAYGVVSLDKARDIASDLGLDLVEVSPTAKPPVVKVIDYG 73
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY ++ K + K ++ ++L KE++F IE DL+ K ++ + +G ++K
Sbjct: 74 KFKYDQQKKANEAKKKQAQVSL-----KEIQFRPNIEAHDLETKLKRAEKFLGQGDKIKM 128
Query: 198 MALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVE 235
+ G++ +DLG LS+ D++ +V E G VE
Sbjct: 129 VMQFRGREMAYKDLG--LSKFKDILA--TVEEMGSQVE 162
>gi|302866848|ref|YP_003835485.1| translation initiation factor IF-3 [Micromonospora aurantiaca ATCC
27029]
gi|315503263|ref|YP_004082150.1| translation initiation factor if-3 [Micromonospora sp. L5]
gi|302569707|gb|ADL45909.1| translation initiation factor IF-3 [Micromonospora aurantiaca ATCC
27029]
gi|315409882|gb|ADU07999.1| translation initiation factor IF-3 [Micromonospora sp. L5]
Length = 215
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG +V V AL LA + DLVEV A PPVCK+MDF K K
Sbjct: 1 MNEQIRAREVRLVGPEGEQVGIVPLERALQLAADVDLDLVEVAPMARPPVCKLMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ LK ++ + + + KE++ KI+ D + K V R + G +VK +
Sbjct: 61 YESALKAREARRNQQQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
G+++ +LG L RL I D+ VE+ P
Sbjct: 116 FRGREQSRPELGYRLLRRLESEITDLGYVEAAP 148
>gi|443290462|ref|ZP_21029556.1| Translation initiation factor IF-3 [Micromonospora lupini str.
Lupac 08]
gi|385886017|emb|CCH17630.1| Translation initiation factor IF-3 [Micromonospora lupini str.
Lupac 08]
Length = 215
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG +V V AL LA + DLVEV A PPVCK+MDF K K
Sbjct: 1 MNEQIRAREVRLVGPEGEQVGIVPLERALQLAADVDLDLVEVAPMARPPVCKLMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ LK ++ + + + KE++ KI+ D + K V R + G +VK +
Sbjct: 61 YESALKAREARRNQQQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
G+++ +LG L RL I D+ VE+ P
Sbjct: 116 FRGREQSRPELGYRLLRRLESEITDLGYVEAAP 148
>gi|310779334|ref|YP_003967667.1| translation initiation factor 3 (bIF-3) [Ilyobacter polytropus DSM
2926]
gi|309748657|gb|ADO83319.1| bacterial translation initiation factor 3 (bIF-3) [Ilyobacter
polytropus DSM 2926]
Length = 170
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VR++ D G + V++ EAL++A DLVEV + PPVCKIMD+ K
Sbjct: 9 RINGRIRAREVRVISDSGEQLGVMNTREALSMAMERDLDLVEVSSNSTPPVCKIMDYGKF 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KEV+F +I++ D + KA +++ + K +VK
Sbjct: 69 KYEQARKAKEAKKNQKLVVV-----KEVKFKARIDKHDFETKASKIEKFLSKDNKVKVTL 123
Query: 200 LPVGKKEETEDLG 212
+ G++ DLG
Sbjct: 124 MLFGRERMHADLG 136
>gi|253700847|ref|YP_003022036.1| translation initiation factor IF-3 [Geobacter sp. M21]
gi|251775697|gb|ACT18278.1| translation initiation factor IF-3 [Geobacter sp. M21]
Length = 173
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A+ VR+V E + ++ EALALA S Q DLVEV A PPVC+IMD+ K K
Sbjct: 8 INQTIRAKEVRVVGAESEQLGILPLREALALAESQQLDLVEVSPTAVPPVCRIMDYGKFK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K + K + + L KEV+ K + DL+ K V+R +++G + K +
Sbjct: 68 YQQAKKLAEAKKKQVQVEL-----KEVKLRPKTDTHDLEFKVKHVRRFLEEGNKAKITVV 122
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L + + DI++VE +E + + I+
Sbjct: 123 FRGREITHQELGMAALEKFAAELADIALVEVRQKMEGRSMFMIV 166
>gi|49473727|ref|YP_031769.1| translation initiation factor IF-3 [Bartonella quintana str.
Toulouse]
gi|403529974|ref|YP_006664503.1| translation initiation factor IF-3 [Bartonella quintana RM-11]
gi|61213108|sp|Q6G1I3.1|IF3_BARQU RecName: Full=Translation initiation factor IF-3
gi|49239230|emb|CAF25550.1| Translation initiation factor IF-3 [Bartonella quintana str.
Toulouse]
gi|403232046|gb|AFR25789.1| translation initiation factor IF-3 [Bartonella quintana RM-11]
Length = 172
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG VV+ EALA+A + DLVE+ PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPCVQLINDEGQHQGVVATQEALAMAAEVGLDLVEIVPNTEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D ++K + R + G +
Sbjct: 65 DLGKLKYQTQKKAAEIRKKQKVIEI-----KEIKMRPNVDVHDYEVKLKAIHRFIGNGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +E+ P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIEAEPKLEGRQMMMVI 169
>gi|336117360|ref|YP_004572127.1| translation initiation factor IF-3 [Microlunatus phosphovorus NM-1]
gi|334685139|dbj|BAK34724.1| translation initiation factor IF-3 [Microlunatus phosphovorus NM-1]
Length = 283
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LAR + DLVEV A PPV K+MD
Sbjct: 56 STEPRINDRIRVPEVRLVGPAGEQVGIVRIDDALRLAREAELDLVEVAPMARPPVAKLMD 115
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K ++ + +++ + KE++ KI+ D + K V R + G +V
Sbjct: 116 YGKFKYENAQKARESRRNQTNTVI-----KEMKLRPKIDSHDYETKKGHVVRFLKAGDKV 170
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L +L +++ VES P + + ++ GP KK
Sbjct: 171 KITIMFRGREQSRPELGYNLLRKLAQDVDEFGFVESAPKQDGRNMLMVL-----GPLKK 224
>gi|390456803|ref|ZP_10242331.1| translation initiation factor IF-3 [Paenibacillus peoriae KCTC
3763]
Length = 165
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I + VRLV G ++ + EAL +A DLV V +A PPVC+IMD+ K +
Sbjct: 2 INDEIRVREVRLVGANGEQIGIKPTREALQMAIDANLDLVNVAPQAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q K V + +++G +VKC
Sbjct: 62 YEQQKKEKEARKNQKIV-----DIKEVWFRSNIEEHDYQTKFRNVVKFLNEGDKVKCSVR 116
Query: 201 PVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ ++G + + L + D+ VE P +E + I+
Sbjct: 117 FRGREITHANVGQKILERVKLEVADLCTVERQPKLEGRSMIMIL 160
>gi|330467000|ref|YP_004404743.1| translation initiation factor if-3 [Verrucosispora maris AB-18-032]
gi|328809971|gb|AEB44143.1| translation initiation factor if-3 [Verrucosispora maris AB-18-032]
Length = 220
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG +V V AL LA + DLVEV A PPVCK+MDF K K
Sbjct: 1 MNEQIRAREVRLVGPEGEQVGIVPLERALQLAADVDLDLVEVAPMARPPVCKLMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ LK ++ + + + KE++ KI+ D + K V R + G +VK +
Sbjct: 61 YESALKAREARRNQQQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
G+++ +LG L RL I ++ VES P
Sbjct: 116 FRGREQSRPELGYRLLRRLESEITELGYVESAP 148
>gi|395792627|ref|ZP_10472051.1| translation initiation factor IF-3 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713289|ref|ZP_17687549.1| translation initiation factor IF-3 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423330|gb|EJF89525.1| translation initiation factor IF-3 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432184|gb|EJF98173.1| translation initiation factor IF-3 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 172
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG +V EALA+A + DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPRVQLINDEGQHQGIVPIQEALAMAADVGLDLVEIVPNAEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K + R + G +
Sbjct: 65 DLGKLKYQTQKKAAETRKKQKVIEI-----KEIKMRPNVDVHDYGVKLKAIHRFIGNGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +ES P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIESEPKLEGRQMMMVI 169
>gi|339444735|ref|YP_004710739.1| hypothetical protein EGYY_11710 [Eggerthella sp. YY7918]
gi|338904487|dbj|BAK44338.1| hypothetical protein EGYY_11710 [Eggerthella sp. YY7918]
Length = 196
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PRLN++I A+ RL+ +G + + +A +A DLVE+ A+PPVC+IMD+ K
Sbjct: 9 PRLNEEITARECRLIGFDGEQMGIYPVVQAQRIADDEGLDLVEIAPMADPPVCRIMDYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY + +K K K +S I + KE++F KI+ D K V R +D G +VK
Sbjct: 69 FKYDQAIKAKQARKNQSKI-----ETKEMKFRPKIDVGDYTTKKKHVLRFLDGGNKVKIT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G L RL D ++D++V+E+ P +E + + +I
Sbjct: 124 IMFRGREMAHPEQGLTILERLADDLKDVAVIENQPKMEGRNMHMLI 169
>gi|165871448|ref|ZP_02216095.1| translation initiation factor IF-3 [Bacillus anthracis str. A0488]
gi|196042362|ref|ZP_03109632.1| translation initiation factor IF-3 [Bacillus cereus NVH0597-99]
gi|196047724|ref|ZP_03114926.1| translation initiation factor IF-3 [Bacillus cereus 03BB108]
gi|217962054|ref|YP_002340624.1| translation initiation factor IF-3 [Bacillus cereus AH187]
gi|218905802|ref|YP_002453636.1| translation initiation factor IF-3 [Bacillus cereus AH820]
gi|254686932|ref|ZP_05150790.1| translation initiation factor IF-3 [Bacillus anthracis str.
CNEVA-9066]
gi|254724496|ref|ZP_05186279.1| translation initiation factor IF-3 [Bacillus anthracis str. A1055]
gi|254754682|ref|ZP_05206717.1| translation initiation factor IF-3 [Bacillus anthracis str. Vollum]
gi|254757514|ref|ZP_05209541.1| translation initiation factor IF-3 [Bacillus anthracis str.
Australia 94]
gi|376268503|ref|YP_005121215.1| Translation initiation factor 3 [Bacillus cereus F837/76]
gi|402555298|ref|YP_006596569.1| translation initiation factor IF-3 [Bacillus cereus FRI-35]
gi|421509324|ref|ZP_15956231.1| translation initiation factor IF-3 [Bacillus anthracis str. UR-1]
gi|421639187|ref|ZP_16079780.1| translation initiation factor IF-3 [Bacillus anthracis str. BF1]
gi|423355056|ref|ZP_17332681.1| translation initiation factor IF-3 [Bacillus cereus IS075]
gi|423373476|ref|ZP_17350815.1| translation initiation factor IF-3 [Bacillus cereus AND1407]
gi|423377582|ref|ZP_17354866.1| translation initiation factor IF-3 [Bacillus cereus BAG1O-2]
gi|423389120|ref|ZP_17366346.1| translation initiation factor IF-3 [Bacillus cereus BAG1X1-3]
gi|423400579|ref|ZP_17377752.1| translation initiation factor IF-3 [Bacillus cereus BAG2X1-2]
gi|423417515|ref|ZP_17394604.1| translation initiation factor IF-3 [Bacillus cereus BAG3X2-1]
gi|423440689|ref|ZP_17417595.1| translation initiation factor IF-3 [Bacillus cereus BAG4X2-1]
gi|423449141|ref|ZP_17426020.1| translation initiation factor IF-3 [Bacillus cereus BAG5O-1]
gi|423457189|ref|ZP_17433986.1| translation initiation factor IF-3 [Bacillus cereus BAG5X2-1]
gi|423463754|ref|ZP_17440522.1| translation initiation factor IF-3 [Bacillus cereus BAG6O-1]
gi|423478712|ref|ZP_17455427.1| translation initiation factor IF-3 [Bacillus cereus BAG6X1-1]
gi|423533106|ref|ZP_17509524.1| translation initiation factor IF-3 [Bacillus cereus HuB2-9]
gi|423541630|ref|ZP_17518021.1| translation initiation factor IF-3 [Bacillus cereus HuB4-10]
gi|423547861|ref|ZP_17524219.1| translation initiation factor IF-3 [Bacillus cereus HuB5-5]
gi|423549688|ref|ZP_17526015.1| translation initiation factor IF-3 [Bacillus cereus ISP3191]
gi|423570802|ref|ZP_17547047.1| translation initiation factor IF-3 [Bacillus cereus MSX-A12]
gi|423573744|ref|ZP_17549863.1| translation initiation factor IF-3 [Bacillus cereus MSX-D12]
gi|423603748|ref|ZP_17579641.1| translation initiation factor IF-3 [Bacillus cereus VD102]
gi|423615040|ref|ZP_17590874.1| translation initiation factor IF-3 [Bacillus cereus VD115]
gi|423622350|ref|ZP_17598128.1| translation initiation factor IF-3 [Bacillus cereus VD148]
gi|164712745|gb|EDR18275.1| translation initiation factor IF-3 [Bacillus anthracis str. A0488]
gi|196021445|gb|EDX60150.1| translation initiation factor IF-3 [Bacillus cereus 03BB108]
gi|196026806|gb|EDX65443.1| translation initiation factor IF-3 [Bacillus cereus NVH0597-99]
gi|217065168|gb|ACJ79418.1| translation initiation factor IF-3 [Bacillus cereus AH187]
gi|218536199|gb|ACK88597.1| translation initiation factor IF-3 [Bacillus cereus AH820]
gi|364514303|gb|AEW57702.1| Translation initiation factor 3 [Bacillus cereus F837/76]
gi|401085233|gb|EJP93476.1| translation initiation factor IF-3 [Bacillus cereus IS075]
gi|401096440|gb|EJQ04487.1| translation initiation factor IF-3 [Bacillus cereus AND1407]
gi|401107794|gb|EJQ15739.1| translation initiation factor IF-3 [Bacillus cereus BAG3X2-1]
gi|401128590|gb|EJQ36279.1| translation initiation factor IF-3 [Bacillus cereus BAG5O-1]
gi|401148966|gb|EJQ56449.1| translation initiation factor IF-3 [Bacillus cereus BAG5X2-1]
gi|401171163|gb|EJQ78396.1| translation initiation factor IF-3 [Bacillus cereus HuB4-10]
gi|401178298|gb|EJQ85478.1| translation initiation factor IF-3 [Bacillus cereus HuB5-5]
gi|401190484|gb|EJQ97526.1| translation initiation factor IF-3 [Bacillus cereus ISP3191]
gi|401203429|gb|EJR10268.1| translation initiation factor IF-3 [Bacillus cereus MSX-A12]
gi|401213843|gb|EJR20580.1| translation initiation factor IF-3 [Bacillus cereus MSX-D12]
gi|401246512|gb|EJR52859.1| translation initiation factor IF-3 [Bacillus cereus VD102]
gi|401261490|gb|EJR67650.1| translation initiation factor IF-3 [Bacillus cereus VD148]
gi|401261896|gb|EJR68047.1| translation initiation factor IF-3 [Bacillus cereus VD115]
gi|401638431|gb|EJS56181.1| translation initiation factor IF-3 [Bacillus cereus BAG1O-2]
gi|401642395|gb|EJS60106.1| translation initiation factor IF-3 [Bacillus cereus BAG1X1-3]
gi|401655303|gb|EJS72837.1| translation initiation factor IF-3 [Bacillus cereus BAG2X1-2]
gi|401796508|gb|AFQ10367.1| translation initiation factor IF-3 [Bacillus cereus FRI-35]
gi|401820776|gb|EJT19939.1| translation initiation factor IF-3 [Bacillus anthracis str. UR-1]
gi|402418820|gb|EJV51109.1| translation initiation factor IF-3 [Bacillus cereus BAG4X2-1]
gi|402421298|gb|EJV53558.1| translation initiation factor IF-3 [Bacillus cereus BAG6O-1]
gi|402426743|gb|EJV58858.1| translation initiation factor IF-3 [Bacillus cereus BAG6X1-1]
gi|402464339|gb|EJV96035.1| translation initiation factor IF-3 [Bacillus cereus HuB2-9]
gi|403393606|gb|EJY90849.1| translation initiation factor IF-3 [Bacillus anthracis str. BF1]
Length = 166
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 2 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 62 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 117 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 160
>gi|229175284|ref|ZP_04302799.1| Translation initiation factor IF-3 [Bacillus cereus MM3]
gi|228608116|gb|EEK65423.1| Translation initiation factor IF-3 [Bacillus cereus MM3]
Length = 186
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 22 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 81
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 82 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 136
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 137 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 180
>gi|260907211|ref|ZP_05915533.1| translation initiation factor IF-3 [Brevibacterium linens BL2]
Length = 192
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V+ +AL LAR DLVEV +A PPV K+MD+ K KY+ K ++ K +++ L
Sbjct: 11 IVAIRKALDLAREADLDLVEVAPQAKPPVAKLMDYGKFKYESAQKAREARKNQANTAL-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE+RF KI++ D + K V R + G +VK M + G+++ ++G L+RL +
Sbjct: 69 ---KEIRFRLKIDEHDYETKKGHVTRFLSGGDKVKVMIMFRGREQSRPEMGIKLLNRLAE 125
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ ++ VES P V+ + +I
Sbjct: 126 DVSELGTVESSPRVDGRNMVMVI 148
>gi|424775441|ref|ZP_18202434.1| translation initiation factor IF-3 [Alcaligenes sp. HPC1271]
gi|422889151|gb|EKU31531.1| translation initiation factor IF-3 [Alcaligenes sp. HPC1271]
Length = 157
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ EG + +V +ALA+A DLVE+ A PPVC++MD+ K +YQ E K +
Sbjct: 1 MRLIGVEGEQLGIVKVPDALAMAEQHDVDLVEIAPAAVPPVCRLMDYGKFRYQ-EQKRQQ 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AKAK I KEV+F ++ D Q+K VKR +D G +VK G++ +
Sbjct: 60 EAKAKQKII----QIKEVKFRPGTDEGDYQVKLRNVKRFIDDGDKVKVTLRFRGREMAHQ 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+LG L R+ D + +I VE+ P +E +Q ++ P KK
Sbjct: 116 ELGMRVLERIRDEVSEICQVEAMPKLEGRQMVMVL-----APRKKA 156
>gi|315608031|ref|ZP_07883024.1| translation initiation factor IF3 [Prevotella buccae ATCC 33574]
gi|315250500|gb|EFU30496.1| translation initiation factor IF3 [Prevotella buccae ATCC 33574]
Length = 226
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 27/216 (12%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V D G +V+ +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKMKNQYRVNEQIRVREVRVVSDGGSEVIPTRKALDMARQQGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
++D+ K +K+QKE+K+K K + KE+RF + ++ D Q K +
Sbjct: 62 LIDYSKFLYQQKKHQKEMKQKQ----------VKVEIKEIRFGPQTDEHDYQFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G +V+ G+ KE+ E L L R + +E+ VE P +E K+ + +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPKLEGKKMFLYM 168
Query: 244 RHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIE 279
P K G +KK + D A +S +E
Sbjct: 169 -----APKKTGVVKKSQQKMDRERREAEAKAASEVE 199
>gi|121610034|ref|YP_997841.1| translation initiation factor IF-3 [Verminephrobacter eiseniae
EF01-2]
gi|121554674|gb|ABM58823.1| bacterial translation initiation factor 3 (bIF-3)
[Verminephrobacter eiseniae EF01-2]
Length = 179
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS EAL +A L DLVE+ ANPPVC++MD+ K KYQ++ K AKAK +
Sbjct: 17 VVSLIEALRMAGELDVDLVEIAATANPPVCRLMDYGKFKYQEQ-KRAAEAKAKQTVI--- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KEV+F + D +K ++R + G + K G++ ++LG L+R+ D
Sbjct: 73 -EIKEVKFRPGTDDGDYHIKMRNIRRFLADGDKCKITLRFRGREITHQELGLALLNRIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ D+ +VE P +E +Q +I
Sbjct: 132 ELADVIIVEQFPKLEGRQMIMMI 154
>gi|227817359|ref|YP_002817368.1| translation initiation factor IF-3 [Bacillus anthracis str. CDC
684]
gi|228917214|ref|ZP_04080771.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929622|ref|ZP_04092640.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935882|ref|ZP_04098692.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948300|ref|ZP_04110583.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228987822|ref|ZP_04147931.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228993302|ref|ZP_04153218.1| Translation initiation factor IF-3 [Bacillus pseudomycoides DSM
12442]
gi|228999355|ref|ZP_04158934.1| Translation initiation factor IF-3 [Bacillus mycoides Rock3-17]
gi|229006910|ref|ZP_04164540.1| Translation initiation factor IF-3 [Bacillus mycoides Rock1-4]
gi|229019799|ref|ZP_04176602.1| Translation initiation factor IF-3 [Bacillus cereus AH1273]
gi|229032220|ref|ZP_04188193.1| Translation initiation factor IF-3 [Bacillus cereus AH1271]
gi|229076077|ref|ZP_04209045.1| Translation initiation factor IF-3 [Bacillus cereus Rock4-18]
gi|229087131|ref|ZP_04219281.1| Translation initiation factor IF-3 [Bacillus cereus Rock3-44]
gi|229093672|ref|ZP_04224772.1| Translation initiation factor IF-3 [Bacillus cereus Rock3-42]
gi|229099036|ref|ZP_04229970.1| Translation initiation factor IF-3 [Bacillus cereus Rock3-29]
gi|229105202|ref|ZP_04235851.1| Translation initiation factor IF-3 [Bacillus cereus Rock3-28]
gi|229118066|ref|ZP_04247425.1| Translation initiation factor IF-3 [Bacillus cereus Rock1-3]
gi|229124141|ref|ZP_04253333.1| Translation initiation factor IF-3 [Bacillus cereus 95/8201]
gi|229141300|ref|ZP_04269838.1| Translation initiation factor IF-3 [Bacillus cereus BDRD-ST26]
gi|229158178|ref|ZP_04286245.1| Translation initiation factor IF-3 [Bacillus cereus ATCC 4342]
gi|229163566|ref|ZP_04291516.1| Translation initiation factor IF-3 [Bacillus cereus R309803]
gi|229186831|ref|ZP_04313986.1| Translation initiation factor IF-3 [Bacillus cereus BGSC 6E1]
gi|229198723|ref|ZP_04325421.1| Translation initiation factor IF-3 [Bacillus cereus m1293]
gi|386738471|ref|YP_006211652.1| translation initiation factor IF-3 [Bacillus anthracis str. H9401]
gi|407707090|ref|YP_006830675.1| thioredoxin family protein [Bacillus thuringiensis MC28]
gi|38372270|sp|Q81L15.2|IF3_BACAN RecName: Full=Translation initiation factor IF-3
gi|61213087|sp|Q633M1.2|IF3_BACCZ RecName: Full=Translation initiation factor IF-3
gi|61213121|sp|Q72ZG2.2|IF3_BACC1 RecName: Full=Translation initiation factor IF-3
gi|227003475|gb|ACP13218.1| translation initiation factor IF-3 [Bacillus anthracis str. CDC
684]
gi|228584745|gb|EEK42865.1| Translation initiation factor IF-3 [Bacillus cereus m1293]
gi|228596568|gb|EEK54233.1| Translation initiation factor IF-3 [Bacillus cereus BGSC 6E1]
gi|228619948|gb|EEK76824.1| Translation initiation factor IF-3 [Bacillus cereus R309803]
gi|228625136|gb|EEK81896.1| Translation initiation factor IF-3 [Bacillus cereus ATCC 4342]
gi|228642081|gb|EEK98374.1| Translation initiation factor IF-3 [Bacillus cereus BDRD-ST26]
gi|228659443|gb|EEL15091.1| Translation initiation factor IF-3 [Bacillus cereus 95/8201]
gi|228665289|gb|EEL20772.1| Translation initiation factor IF-3 [Bacillus cereus Rock1-3]
gi|228678128|gb|EEL32356.1| Translation initiation factor IF-3 [Bacillus cereus Rock3-28]
gi|228684264|gb|EEL38208.1| Translation initiation factor IF-3 [Bacillus cereus Rock3-29]
gi|228689759|gb|EEL43566.1| Translation initiation factor IF-3 [Bacillus cereus Rock3-42]
gi|228696199|gb|EEL49034.1| Translation initiation factor IF-3 [Bacillus cereus Rock3-44]
gi|228706940|gb|EEL59145.1| Translation initiation factor IF-3 [Bacillus cereus Rock4-18]
gi|228729000|gb|EEL80003.1| Translation initiation factor IF-3 [Bacillus cereus AH1271]
gi|228741524|gb|EEL91721.1| Translation initiation factor IF-3 [Bacillus cereus AH1273]
gi|228754310|gb|EEM03725.1| Translation initiation factor IF-3 [Bacillus mycoides Rock1-4]
gi|228760300|gb|EEM09267.1| Translation initiation factor IF-3 [Bacillus mycoides Rock3-17]
gi|228766370|gb|EEM15013.1| Translation initiation factor IF-3 [Bacillus pseudomycoides DSM
12442]
gi|228771870|gb|EEM20327.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228811287|gb|EEM57625.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823650|gb|EEM69472.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830009|gb|EEM75628.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842415|gb|EEM87506.1| Translation initiation factor IF-3 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|384388323|gb|AFH85984.1| Translation initiation factor IF-3 [Bacillus anthracis str. H9401]
gi|407384775|gb|AFU15276.1| translation initiation factor IF-3 [Bacillus thuringiensis MC28]
Length = 167
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 118 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 161
>gi|163942309|ref|YP_001647193.1| translation initiation factor IF-3 [Bacillus weihenstephanensis
KBAB4]
gi|423368602|ref|ZP_17346034.1| translation initiation factor IF-3 [Bacillus cereus VD142]
gi|423452143|ref|ZP_17428996.1| translation initiation factor IF-3 [Bacillus cereus BAG5X1-1]
gi|423470776|ref|ZP_17447520.1| translation initiation factor IF-3 [Bacillus cereus BAG6O-2]
gi|423484139|ref|ZP_17460829.1| translation initiation factor IF-3 [Bacillus cereus BAG6X1-2]
gi|423489739|ref|ZP_17466421.1| translation initiation factor IF-3 [Bacillus cereus BtB2-4]
gi|423495462|ref|ZP_17472106.1| translation initiation factor IF-3 [Bacillus cereus CER057]
gi|423497743|ref|ZP_17474360.1| translation initiation factor IF-3 [Bacillus cereus CER074]
gi|423512675|ref|ZP_17489206.1| translation initiation factor IF-3 [Bacillus cereus HuA2-1]
gi|423519257|ref|ZP_17495738.1| translation initiation factor IF-3 [Bacillus cereus HuA2-4]
gi|423521542|ref|ZP_17498015.1| translation initiation factor IF-3 [Bacillus cereus HuA4-10]
gi|423557845|ref|ZP_17534147.1| translation initiation factor IF-3 [Bacillus cereus MC67]
gi|423591451|ref|ZP_17567482.1| translation initiation factor IF-3 [Bacillus cereus VD048]
gi|423598131|ref|ZP_17574131.1| translation initiation factor IF-3 [Bacillus cereus VD078]
gi|423660581|ref|ZP_17635750.1| translation initiation factor IF-3 [Bacillus cereus VDM022]
gi|423670140|ref|ZP_17645169.1| translation initiation factor IF-3 [Bacillus cereus VDM034]
gi|423673653|ref|ZP_17648592.1| translation initiation factor IF-3 [Bacillus cereus VDM062]
gi|163864506|gb|ABY45565.1| translation initiation factor IF-3 [Bacillus weihenstephanensis
KBAB4]
gi|401080128|gb|EJP88418.1| translation initiation factor IF-3 [Bacillus cereus VD142]
gi|401139165|gb|EJQ46728.1| translation initiation factor IF-3 [Bacillus cereus BAG6X1-2]
gi|401142214|gb|EJQ49763.1| translation initiation factor IF-3 [Bacillus cereus BAG5X1-1]
gi|401150369|gb|EJQ57828.1| translation initiation factor IF-3 [Bacillus cereus CER057]
gi|401159614|gb|EJQ66997.1| translation initiation factor IF-3 [Bacillus cereus HuA2-4]
gi|401162223|gb|EJQ69581.1| translation initiation factor IF-3 [Bacillus cereus CER074]
gi|401177744|gb|EJQ84931.1| translation initiation factor IF-3 [Bacillus cereus HuA4-10]
gi|401192382|gb|EJQ99398.1| translation initiation factor IF-3 [Bacillus cereus MC67]
gi|401232819|gb|EJR39317.1| translation initiation factor IF-3 [Bacillus cereus VD048]
gi|401237592|gb|EJR44043.1| translation initiation factor IF-3 [Bacillus cereus VD078]
gi|401297500|gb|EJS03109.1| translation initiation factor IF-3 [Bacillus cereus VDM034]
gi|401302489|gb|EJS08068.1| translation initiation factor IF-3 [Bacillus cereus VDM022]
gi|401310518|gb|EJS15834.1| translation initiation factor IF-3 [Bacillus cereus VDM062]
gi|402431030|gb|EJV63102.1| translation initiation factor IF-3 [Bacillus cereus BtB2-4]
gi|402434514|gb|EJV66552.1| translation initiation factor IF-3 [Bacillus cereus BAG6O-2]
gi|402447599|gb|EJV79449.1| translation initiation factor IF-3 [Bacillus cereus HuA2-1]
Length = 166
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA L DLV V A PPVC+IMD+ K +
Sbjct: 2 INEQIRAREVRLVGANGDQLGIKSRNDALDLAAGLNLDLVLVAPNAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 62 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAVKFLEKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 117 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 160
>gi|392958164|ref|ZP_10323680.1| translation initiation factor IF-3 [Bacillus macauensis ZFHKF-1]
gi|391875822|gb|EIT84426.1| translation initiation factor IF-3 [Bacillus macauensis ZFHKF-1]
Length = 167
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + + +RHEAL +A + DLV V A PPVC+IMD+ K K
Sbjct: 3 VNEGIRAREVRLIGADGSQLGIKTRHEALDIAANANLDLVLVAPNAKPPVCRIMDYGKFK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + +T KE+R S IE+ D K ++ ++KG +VK
Sbjct: 63 FEQQKKDREARKNQKIVT-----TKEIRLSPTIEEHDFNTKLKNARKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +G L +L EDI+ VE P +E + + I+
Sbjct: 118 FRGRAITHSQIGKTVLEKLAKECEDIATVEVRPKMEGRSMFLIL 161
>gi|325283367|ref|YP_004255908.1| Translation initiation factor IF-3 [Deinococcus proteolyticus MRP]
gi|324315176|gb|ADY26291.1| Translation initiation factor IF-3 [Deinococcus proteolyticus MRP]
Length = 226
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 91/155 (58%), Gaps = 10/155 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + +RL+ +G +V + +AL +AR DLV V +A PPVCK++D+ +
Sbjct: 21 KVNEQIRVRQIRLIGADGEQVGIIDTRDALRMAREKNLDLVMVSPQAVPPVCKLLDYGRF 80
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ EK+ R +A+S + K +++ KI+ D + K + V+R ++ G++VK
Sbjct: 81 RYEQQQNEKENRKRARSQ------EVKSIKYRVKIDDNDFKTKTNHVRRFLEAGHKVKVT 134
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + ++DI ES P
Sbjct: 135 IMFRGRERTHPELGERILVRVAETLQDIGAPESKP 169
>gi|222099843|ref|YP_002534411.1| translation initiation factor IF-3 [Thermotoga neapolitana DSM
4359]
gi|221572233|gb|ACM23045.1| Translation initiation factor IF-3 [Thermotoga neapolitana DSM
4359]
Length = 177
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 11/167 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR N++I VR+V + G ++ + +AL LAR DLV V A+PPV +IMD+ K
Sbjct: 15 PR-NEQIKVPKVRVVDENGKQIGIMPTRKALDLAREKGLDLVLVAPNADPPVARIMDYGK 73
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KYQ L +K + K + L K+++F KI++ D Q K ++R +++G++V+ +
Sbjct: 74 YKYQ--LTKKQKENKKKAVQL-----KQMKFRLKIDEHDYQTKVRHIRRFLEEGHKVRVV 126
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
+ +G++ D G L R+I ED++VVES P VE + + +++
Sbjct: 127 VMFIGREMMFTDKGKEILERVIKDTEDLAVVESPPKVEGRDMWMVLK 173
>gi|50842895|ref|YP_056122.1| translation initiation factor IF-3 [Propionibacterium acnes
KPA171202]
gi|342213288|ref|ZP_08706013.1| translation initiation factor IF-3 [Propionibacterium sp.
CC003-HC2]
gi|354607829|ref|ZP_09025797.1| hypothetical protein HMPREF1003_02364 [Propionibacterium sp.
5_U_42AFAA]
gi|386024373|ref|YP_005942678.1| translation initiation factor IF-3 [Propionibacterium acnes 266]
gi|417930349|ref|ZP_12573728.1| translation initiation factor IF-3 [Propionibacterium acnes SK182]
gi|50840497|gb|AAT83164.1| translation initiation factor IF-3 [Propionibacterium acnes
KPA171202]
gi|332675831|gb|AEE72647.1| translation initiation factor IF-3 [Propionibacterium acnes 266]
gi|340768832|gb|EGR91357.1| translation initiation factor IF-3 [Propionibacterium sp.
CC003-HC2]
gi|340772476|gb|EGR94980.1| translation initiation factor IF-3 [Propionibacterium acnes SK182]
gi|353556375|gb|EHC25746.1| hypothetical protein HMPREF1003_02364 [Propionibacterium sp.
5_U_42AFAA]
Length = 268
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+N++I VRLV G +V V +AL LAR DLVEV +A PPV K+MD
Sbjct: 42 STEPRINERIRVPEVRLVGPNGEQVGIVRVEQALQLAREQDLDLVEVAPQARPPVVKLMD 101
Query: 136 FHKEKYQ--KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+ K KY+ ++ +E R +A S I KE++ KI+ D + K V R + G
Sbjct: 102 YGKFKYEAAQKARESRRNQANSII-------KEMKLRPKIDDHDYETKKGHVLRFLKAGD 154
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK + G+++ +LG L RL D + + + VES P E + I+
Sbjct: 155 KVKITIMFRGREQSRPELGVNLLRRLADDLTEYATVESPPKQEGRNMLMIL 205
>gi|322419730|ref|YP_004198953.1| translation initiation factor IF-3 [Geobacter sp. M18]
gi|320126117|gb|ADW13677.1| translation initiation factor IF-3 [Geobacter sp. M18]
Length = 177
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A+ VR+V E + ++ EALALA SLQ DLVEV A PPVC+IMD+ K K
Sbjct: 13 INQTIRAKEVRVVGAESEQLGILPLREALALAESLQLDLVEVSPTAVPPVCRIMDYGKFK 72
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K+ + K + + L KEV+ K + DL+ K V+R +++G + K +
Sbjct: 73 YQQAKKQAEAKKKQVQVEL-----KEVKLRPKTDVHDLEFKVKHVRRFLEEGNKAKITVV 127
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L + + DI++VE +E + + I+
Sbjct: 128 FRGREITHQELGMAALEKFAAELADIALVEVRQKMEGRSMFMIV 171
>gi|110633028|ref|YP_673236.1| translation initiation factor IF-3 [Chelativorans sp. BNC1]
gi|110284012|gb|ABG62071.1| bacterial translation initiation factor 3 (bIF-3) [Chelativorans
sp. BNC1]
Length = 192
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 62 FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDL 119
F AAPV + GPR N I V+L+ D+G +VS EAL +A DL
Sbjct: 19 FKAAPVVKE---------GPRSNRDIRVPRVQLIDDDGSNRGIVSTDEALRIAEEAGLDL 69
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
VEV A+PPVCKI D K KYQ + K + K + I + KE++ I+ D +
Sbjct: 70 VEVSPNADPPVCKITDLGKLKYQSQKKAAEARKKQKTI-----EIKEIKMRPNIDIHDYE 124
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
+K +V+R ++G +VK G++ +LG L+R+ + +E I+ VE+ P +E +Q
Sbjct: 125 VKMRSVRRFFEEGDKVKLTLRFRGREMAHLELGMKLLNRVREDVEGIAKVEAEPKLEGRQ 184
Query: 239 AYAII 243
++
Sbjct: 185 MMMVL 189
>gi|433443898|ref|ZP_20409021.1| translation initiation factor IF-3 [Anoxybacillus flavithermus
TNO-09.006]
gi|432001872|gb|ELK22739.1| translation initiation factor IF-3 [Anoxybacillus flavithermus
TNO-09.006]
Length = 180
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRLV G + + ++ EAL +A L DLV V A PPVC+IMD+ K +
Sbjct: 16 INENIRAREVRLVDPNGEQLGIKTKQEALEIAARLNLDLVMVAPNAKPPVCRIMDYGKFR 75
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 76 FEQQKKEKEARKKQKVI-----NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 130
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + DI VE+ P ++ + + ++
Sbjct: 131 FKGRAITHKEIGQRVLDRFAEACADIGTVETAPKMDGRSMFLVL 174
>gi|423395149|ref|ZP_17372350.1| translation initiation factor IF-3 [Bacillus cereus BAG2X1-1]
gi|423406009|ref|ZP_17383158.1| translation initiation factor IF-3 [Bacillus cereus BAG2X1-3]
gi|401655920|gb|EJS73448.1| translation initiation factor IF-3 [Bacillus cereus BAG2X1-1]
gi|401660678|gb|EJS78156.1| translation initiation factor IF-3 [Bacillus cereus BAG2X1-3]
Length = 166
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA L DLV V A PPVC+IMD+ K +
Sbjct: 2 INEQIRAREVRLVGANGDQLGIKSRNDALDLAAGLNLDLVLVAPNAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 62 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 117 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 160
>gi|88607227|ref|YP_505782.1| translation initiation factor IF-3 [Anaplasma phagocytophilum HZ]
gi|88598290|gb|ABD43760.1| translation initiation factor IF-3 [Anaplasma phagocytophilum HZ]
Length = 172
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 21/185 (11%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+ND I + VRLV + G V V EALA+A DLVEV + PVCK+
Sbjct: 2 DKKGPRINDAITTKRVRLVDETGTMVGVVDIEEALAVAARAGMDLVEVVSEGEYPVCKVY 61
Query: 135 DFHKEKYQKE---LKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDK 191
++ K+KY K+ + +K R+ A KE++F IE D +K + +K ++K
Sbjct: 62 NYSKQKYNKKKHGVTKKQRSSA----------VKELKFRINIEDNDYNIKLNNLKSFIEK 111
Query: 192 GYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGP 250
G +VK VG++ + +++G L RL+ E I+ ES P ++ + + FG
Sbjct: 112 GNKVKVSLRFVGRELQYKEVGLDILDRLVSDTEGIAKPESSPRMDGN-----VLSMMFGA 166
Query: 251 SKKGG 255
GG
Sbjct: 167 KTGGG 171
>gi|224826513|ref|ZP_03699614.1| translation initiation factor IF-3 [Pseudogulbenkiania ferrooxidans
2002]
gi|347539114|ref|YP_004846539.1| translation initiation factor IF-3 [Pseudogulbenkiania sp. NH8B]
gi|224601114|gb|EEG07296.1| translation initiation factor IF-3 [Pseudogulbenkiania ferrooxidans
2002]
gi|345642292|dbj|BAK76125.1| translation initiation factor IF-3 [Pseudogulbenkiania sp. NH8B]
Length = 174
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ +RLV EG + +VS EA+A A L DLVE+ A PPVCK+MD+ K
Sbjct: 10 RINGEITAREIRLVGKEGEQLGIVSLREAMAAAEELDIDLVEISPTAQPPVCKLMDYGKF 69
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K++ AK K K+ KEV+F + D +K + R + G + K
Sbjct: 70 KYEQS-KKRHEAKLKQ----KQVQIKEVKFRPGTDDGDYGVKLRNLVRFLSDGDKAKVTL 124
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ +D+G L R+ + ++ VE P +E +Q +I P KK
Sbjct: 125 RFRGREMAHQDIGLALLKRVEADLAEVGTVEQFPRLEGRQMVMMI-----APKKK 174
>gi|229013778|ref|ZP_04170906.1| Translation initiation factor IF-3 [Bacillus mycoides DSM 2048]
gi|229062259|ref|ZP_04199580.1| Translation initiation factor IF-3 [Bacillus cereus AH603]
gi|229135410|ref|ZP_04264198.1| Translation initiation factor IF-3 [Bacillus cereus BDRD-ST196]
gi|229169302|ref|ZP_04297012.1| Translation initiation factor IF-3 [Bacillus cereus AH621]
gi|228614065|gb|EEK71180.1| Translation initiation factor IF-3 [Bacillus cereus AH621]
gi|228648053|gb|EEL04100.1| Translation initiation factor IF-3 [Bacillus cereus BDRD-ST196]
gi|228716987|gb|EEL68668.1| Translation initiation factor IF-3 [Bacillus cereus AH603]
gi|228747447|gb|EEL97322.1| Translation initiation factor IF-3 [Bacillus mycoides DSM 2048]
Length = 167
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA L DLV V A PPVC+IMD+ K +
Sbjct: 3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAAGLNLDLVLVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAVKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 118 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 161
>gi|83815747|ref|YP_446894.1| translation initiation factor IF-3 [Salinibacter ruber DSM 13855]
gi|83757141|gb|ABC45254.1| translation initiation factor IF-3 [Salinibacter ruber DSM 13855]
Length = 153
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 97 DEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSD 156
D H VV EAL AR + DLVEV A+PPVCKI+D+ K +Y+K+ KE+ R + KS
Sbjct: 5 DGDHDVVPTGEALDRARDHELDLVEVAPDADPPVCKILDYGKYRYEKQ-KEEQRRRKKS- 62
Query: 157 ITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYL 215
K + KE+RF + E+ D K D + ++ G +VK G+ +D G L
Sbjct: 63 ---KSMEMKELRFRPRTEEHDFNFKVDHAREFLEDGNKVKAYVQFKGRDIVYKDQGMDLL 119
Query: 216 SRLIDLIEDISVVESGPHVERKQAYAII 243
R+I+ +++I+ ++ P +E ++ I+
Sbjct: 120 RRMIEELQEIARIDQQPEMEGRRMVMIL 147
>gi|403526590|ref|YP_006661477.1| translation initiation factor IF-3 [Arthrobacter sp. Rue61a]
gi|403229017|gb|AFR28439.1| translation initiation factor IF-3 [Arthrobacter sp. Rue61a]
Length = 338
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV +A PPVCK+MDF K KY+ +K ++
Sbjct: 1 MRLVGPAGEQVGIVRIEDALRLAAESDLDLVEVAPQAKPPVCKLMDFGKYKYEAAVKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K +++ L KE+RF KI++ D + K R + G +VK M G++++
Sbjct: 61 ARKNQTNTVL-----KEIRFRLKIDKHDYETKRGHALRFLGAGDKVKAMIQFRGREQQRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++G L R + + ++ ++ES P ++ + +I
Sbjct: 116 EMGIRLLQRFAEDVAEVGIIESSPRIDGRNMVMVI 150
>gi|262091710|gb|ACY25300.1| translation initiation factor IF-3 [uncultured actinobacterium]
Length = 239
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 8/175 (4%)
Query: 64 AAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVE 121
A P+ + K + PR N++I A+ VRLV +G +V VS +AL AR+ + DLVE
Sbjct: 20 ATPLAQESKAIAPPINEPRYNERIRAREVRLVDADGSQVGVVSIADALERARTAELDLVE 79
Query: 122 VDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMK 181
V +A+PPVC+IMD+ K +Y++ + K+ K IT+ KEV+F KI + D K
Sbjct: 80 VAAQADPPVCRIMDYGKFRYEESQRLKESRKKTVQITM-----KEVKFRPKIGKGDFDTK 134
Query: 182 ADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ + +G++VK G++ +LG L +I+ + I+ V++ +E
Sbjct: 135 VRHMHEFLGEGHKVKVTLQFRGREVAHPELGRKILDAVIEQLGPIARVDTMARLE 189
>gi|237808485|ref|YP_002892925.1| translation initiation factor IF-3 [Tolumonas auensis DSM 9187]
gi|237500746|gb|ACQ93339.1| translation initiation factor IF-3 [Tolumonas auensis DSM 9187]
Length = 179
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 8/175 (4%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPP 129
KK K+T R+N +I + VRLV EG +VS EAL A DLVE+ A PP
Sbjct: 5 KKTGKQTPRTRINGEIRLKEVRLVGLEGEALGIVSMEEALDAAIKAGVDLVEISPTAEPP 64
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMDF K Y EK ++ + K+ KE++F ++ D Q+K + R +
Sbjct: 65 VCRIMDFGKFLY-----EKSKSVKEQKKKTKQIQIKEIKFRPGTDEGDYQVKLRNLIRFL 119
Query: 190 DKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++G + K G++ +DLG L R+ +E+I+VVES P VE +QA ++
Sbjct: 120 EEGDKAKVTLRFRGREMAHQDLGMNVLERVKADLEEIAVVESFPRVEGRQAVMML 174
>gi|229916378|ref|YP_002885024.1| translation initiation factor IF-3 [Exiguobacterium sp. AT1b]
gi|229467807|gb|ACQ69579.1| translation initiation factor IF-3 [Exiguobacterium sp. AT1b]
Length = 176
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + V SR++AL LA + DLV V KANPPV KIMD+ K +
Sbjct: 12 INENIRAREVRLIGADGAQLGVTSRNDALRLAEEAELDLVLVADKANPPVAKIMDYGKYR 71
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ + KEK+ K + I + KEVR S IE D Q K ++ ++KG +VK
Sbjct: 72 FELQKKEKEARKNQKVIQM-----KEVRLSPTIEDNDFQTKLRNARKFLEKGNKVKASIR 126
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++G L ++ D++ VE P +E + + ++
Sbjct: 127 FRGRAITHSEIGKRVLDKMAAECADLATVEQKPKMEGRSMFLVL 170
>gi|334127677|ref|ZP_08501581.1| translation initiation factor IF3 [Centipeda periodontii DSM 2778]
gi|333388914|gb|EGK60082.1| translation initiation factor IF3 [Centipeda periodontii DSM 2778]
Length = 206
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+ + VR+ EG + ++ +AL +A DLVEV KA PPVC+IMDF K
Sbjct: 21 RINEEIHIREVRVTSAEGEQLGIMLTRDALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKY 80
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 81 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 135
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + + +E G +E K I+
Sbjct: 136 MFRGRELSHPELGRAVLDRVAERMTQLVTIERGAKLEGKNMTMIL 180
>gi|257790986|ref|YP_003181592.1| translation initiation factor IF-3 [Eggerthella lenta DSM 2243]
gi|317488304|ref|ZP_07946867.1| translation initiation factor IF-3 [Eggerthella sp. 1_3_56FAA]
gi|325830726|ref|ZP_08164110.1| translation initiation factor IF-3 [Eggerthella sp. HGA1]
gi|257474883|gb|ACV55203.1| translation initiation factor IF-3 [Eggerthella lenta DSM 2243]
gi|316912589|gb|EFV34135.1| translation initiation factor IF-3 [Eggerthella sp. 1_3_56FAA]
gi|325487133|gb|EGC89576.1| translation initiation factor IF-3 [Eggerthella sp. HGA1]
Length = 198
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PRLN++I + RL+ +G + + EA +A + DLVE+ A PPVC+IMD+ K
Sbjct: 13 PRLNEEITVRECRLIGFDGEQMGIYVTAEAQRVADNQGLDLVEIAPNAEPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY + +K K K +S K + KE++F KI+ D K V R ++ G +VK
Sbjct: 73 FKYDQAIKAKQARKNQS-----KVETKEMKFRPKIDVGDYTTKKKHVMRFLEAGNKVKIT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L RL D ++D +V+E+ P +E + + +I
Sbjct: 128 IMFRGREMAHPELGLTILERLADDLKDEAVIENQPKMEGRNMHMLI 173
>gi|308049558|ref|YP_003913124.1| translation initiation factor 3 (bIF-3) [Ferrimonas balearica DSM
9799]
gi|307631748|gb|ADN76050.1| bacterial translation initiation factor 3 (bIF-3) [Ferrimonas
balearica DSM 9799]
Length = 172
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ EG + +V+ +EAL +A + + DLVE+ A PPVC++MD
Sbjct: 7 RINGEIRAREVRLIDAEGEQAGIVTLNEALDMAAAAELDLVEISPNAEPPVCRVMD---- 62
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y K L EK +A + K+ KE++F + D Q+K + R +++G +VK
Sbjct: 63 -YGKFLYEKSKAANEQRKKTKQIQVKELKFRPGTDVGDYQVKLRNLVRFLEEGDKVKVTL 121
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L+R+ D +++ VES P +E +QA ++ P KK
Sbjct: 122 RFRGREMAHQQLGFDLLNRIKDDTAELAQVESFPKMEGRQAIMVL-----APKKK 171
>gi|332670156|ref|YP_004453164.1| translation initiation factor IF-3 [Cellulomonas fimi ATCC 484]
gi|332339194|gb|AEE45777.1| translation initiation factor IF-3 [Cellulomonas fimi ATCC 484]
Length = 309
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 11/149 (7%)
Query: 106 HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCK 165
+AL LA+ DLVEV A PPVCKIMD+ K KY+ ++K ++ + +++ L K
Sbjct: 2 EDALRLAQDADLDLVEVAPDARPPVCKIMDYGKFKYEADMKAREARRNQTNTVL-----K 56
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIED 224
E+RF KI+ D K V+R + G +VK M + G+++ ++G L RL D + +
Sbjct: 57 EIRFRLKIDPHDYGTKKGHVERFLKAGDKVKVMIMFRGREQSRPEMGIRLLQRLADDVAE 116
Query: 225 ISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ VES P + + ++ GP+KK
Sbjct: 117 LGFVESSPKQDGRNMIMVL-----GPTKK 140
>gi|229820871|ref|YP_002882397.1| translation initiation factor IF-3 [Beutenbergia cavernae DSM
12333]
gi|229566784|gb|ACQ80635.1| translation initiation factor IF-3 [Beutenbergia cavernae DSM
12333]
Length = 192
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV G +V V +AL LA DLVEV A PPV K+MDF K KY+ +K +D
Sbjct: 4 VRLVGPNGEQVGIVRVEDALRLAEEADLDLVEVAPDARPPVAKLMDFGKFKYESAMKARD 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE+RF KI+ D K V+R + G +VK M + G+++
Sbjct: 64 ARRNQANTVL-----KEIRFRLKIDPHDYGTKKGHVERFLTAGDKVKVMIMFRGREQSRP 118
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
++G L RL D + ++ VES P ++ + +I
Sbjct: 119 EMGMRLLQRLADDVAELGHVESTPRLDGRNMTMVI 153
>gi|349687395|ref|ZP_08898537.1| translation initiation factor IF-3 [Gluconacetobacter oboediens
174Bp2]
Length = 173
Score = 79.7 bits (195), Expect = 4e-12, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+N++I VRL+ +EG ++S +ALA A S+ DL+E+ A PPV K++D+
Sbjct: 9 GPRVNEEIRVPQVRLIDEEGEMLGIMSTRDALARAYSVGLDLLEISPNAEPPVAKVLDYG 68
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+++ K+++ A+ K + + KEV+ I++ D Q+K +K + +G +VK
Sbjct: 69 KFKYEQQ-KKRNEARKKQKVI----EIKEVKVRPNIDENDYQVKMRAMKTFIGEGDKVKV 123
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ +++I+ VE P +E +Q ++
Sbjct: 124 TLRFRGREMAHQDLGVKVLERIRAEMDEIAKVEHMPKLENRQMIMVL 170
>gi|386263191|ref|YP_005816470.1| protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis Sweden2]
gi|389858530|ref|YP_006360772.1| protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis F/SW4]
gi|389859406|ref|YP_006361647.1| protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis E/SW3]
gi|389860282|ref|YP_006362522.1| protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis F/SW5]
gi|289525879|emb|CBJ15361.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis Sweden2]
gi|380249602|emb|CCE14899.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis F/SW5]
gi|380250477|emb|CCE14010.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis F/SW4]
gi|380251355|emb|CCE13121.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis E/SW3]
gi|440527547|emb|CCP53031.1| translation initiation factor IF-3 [Chlamydia trachomatis
D/SotonD1]
gi|440530221|emb|CCP55705.1| translation initiation factor IF-3 [Chlamydia trachomatis
E/SotonE4]
gi|440531118|emb|CCP56602.1| translation initiation factor IF-3 [Chlamydia trachomatis
E/SotonE8]
gi|440532011|emb|CCP57521.1| translation initiation factor IF-3 [Chlamydia trachomatis
F/SotonF3]
gi|440535587|emb|CCP61097.1| translation initiation factor IF-3 [Chlamydia trachomatis E/Bour]
Length = 175
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PPVCKIMD+ K
Sbjct: 6 RINRQIRAPRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSEPPVCKIMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 66 RYDVTKKEKDSKKAQHQVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 121 MFRGRELAYPEHGHKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 165
>gi|390956550|ref|YP_006420307.1| translation initiation factor 3 (bIF-3) [Terriglobus roseus DSM
18391]
gi|390411468|gb|AFL86972.1| bacterial translation initiation factor 3 (bIF-3) [Terriglobus
roseus DSM 18391]
Length = 246
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N+KI A+ +R++ + G + +++ +AL +AR DLVE+ A PPVC+I D+ K
Sbjct: 60 RTNEKIRAREIRVIDENGEQLGIMAPFDALKIARERSLDLVEISPNAAPPVCRIQDYGKY 119
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+K+ + DRA K + KEV+FS +++ D Q K + R + +G +VK
Sbjct: 120 LYEKD--KSDRAARKKQKVIV---IKEVKFSVTVDEHDYQTKKNQAVRFLGEGDKVKASL 174
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ DLG ++RLI I +VE P +E +AII P+KK
Sbjct: 175 RFRGRQMAHRDLGYKIVNRLIMDIGAAGIVEFMPRMEGTTLHAII-----APTKK 224
>gi|429735286|ref|ZP_19269255.1| translation initiation factor IF-3 [Selenomonas sp. oral taxon 138
str. F0429]
gi|429159398|gb|EKY01913.1| translation initiation factor IF-3 [Selenomonas sp. oral taxon 138
str. F0429]
Length = 187
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+ + VR+ EG + ++ +AL +A DLVEV KA PPVC+IMDF K
Sbjct: 2 RINEEIHIREVRVTSAEGEQLGIMLTRDALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 62 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + ++ +E G +E K I+
Sbjct: 117 MFRGRELSHPELGRAVLDRVAERMTELVTIERGAKLEGKNMTMIL 161
>gi|409359275|ref|ZP_11237626.1| translation initiation factor IF-3 [Dietzia alimentaria 72]
Length = 197
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +AL LA DLVEV A PPVCKIMD+ K
Sbjct: 15 RINERIRVPEVRLVGPGGEQVGIVRVEDALRLALEADLDLVEVAPNARPPVCKIMDYGKF 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ KE++ K + + KE + KI+ D + K V R ++KG +VK
Sbjct: 75 KYEAAQKERESRKNQQQTVV-----KEQKLRPKIDTHDYETKKGNVVRFLEKGSKVKVTI 129
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
+ G+++ +LG L RL D I D VE+
Sbjct: 130 MFRGREQSRPELGFRLLQRLADDITDFGYVET 161
>gi|156741418|ref|YP_001431547.1| translation initiation factor IF-3 [Roseiflexus castenholzii DSM
13941]
gi|156232746|gb|ABU57529.1| translation initiation factor IF-3 [Roseiflexus castenholzii DSM
13941]
Length = 225
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VRL+ + G +V V +AL +A DLVEV A PPVC+I+D+ K
Sbjct: 20 RINNRIRAREVRLIDENGAQVGIVPIRDALLMAEERGLDLVEVAPNAVPPVCRILDYGKF 79
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++ KE++ K + K+ D K++R K ++ DL +KA +R + G +VK
Sbjct: 80 RYEQSKKEREARKNQ-----KQVDVKQIRLEPKTDEHDLDVKAKQARRFLLDGDKVKFNL 134
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ +++G L R+ + + D+SVVE P +E
Sbjct: 135 RFRGREIFHQEIGLEMLERMAEELRDVSVVEQRPTME 171
>gi|440533797|emb|CCP59307.1| translation initiation factor IF-3 [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534691|emb|CCP60201.1| translation initiation factor IF-3 [Chlamydia trachomatis
Ia/SotonIa3]
Length = 175
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PPVCKIMD+ K
Sbjct: 6 RINRQIRALRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSEPPVCKIMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 66 RYDVTKKEKDSKKAQHQVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 121 MFRGRELAYPEHGYKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 165
>gi|119961908|ref|YP_947378.1| translation initiation factor IF-3 [Arthrobacter aurescens TC1]
gi|119948767|gb|ABM07678.1| translation initiation factor IF-3 [Arthrobacter aurescens TC1]
Length = 344
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV +A PPVCK+MDF K KY+ +K ++
Sbjct: 1 MRLVGPAGEQVGIVRIEDALRLAAESDLDLVEVAPQAKPPVCKLMDFGKYKYEAAVKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K +++ L KE+RF KI++ D + K R + G +VK M G++++
Sbjct: 61 ARKNQTNTVL-----KEIRFRLKIDKHDYETKRGHALRFLGAGDKVKAMIQFRGREQQRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++G L R + + ++ ++ES P ++ + +I
Sbjct: 116 EMGIRLLQRFAEDVAEVGIIESSPRIDGRNMVMVI 150
>gi|88855450|ref|ZP_01130114.1| translation initiation factor IF-3 [marine actinobacterium
PHSC20C1]
gi|88815357|gb|EAR25215.1| translation initiation factor IF-3 [marine actinobacterium
PHSC20C1]
Length = 205
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 17/180 (9%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
S PR ND+I VRLV G +V VS AL LA+ DLVEV + PPV KIMD
Sbjct: 6 ISDPRTNDRIRVPEVRLVGPGGEQVGVVSIDVALKLAQEADLDLVEVAPNSKPPVAKIMD 65
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY++ K K+ + +++ L KEVRF KI++ D + K + + G +V
Sbjct: 66 YGKFKYEEAQKAKEARRNQTNTIL-----KEVRFRLKIDKHDYETKRKRAEGFLAGGDKV 120
Query: 196 KCMALPVGKKEETEDLGGYLSRLIDLIEDIS---VVESGPHVERKQAYAIIRHVKFGPSK 252
K M L G+++ D G L L ED+S +ES P ++ + II GP K
Sbjct: 121 KAMILFRGREQSRPDQGVRL--LQKFAEDVSEFGSIESTPMIDGRNMVMII-----GPHK 173
>gi|15605568|ref|NP_220354.1| translation initiation factor IF-3 [Chlamydia trachomatis
D/UW-3/CX]
gi|7387790|sp|O84840.2|IF3_CHLTR RecName: Full=Translation initiation factor IF-3
gi|6578116|gb|AAC68430.2| Initiation Factor 3 [Chlamydia trachomatis D/UW-3/CX]
gi|440525762|emb|CCP51013.1| translation initiation factor IF-3 [Chlamydia trachomatis
K/SotonK1]
gi|440528438|emb|CCP53922.1| translation initiation factor IF-3 [Chlamydia trachomatis
D/SotonD5]
gi|440529329|emb|CCP54813.1| translation initiation factor IF-3 [Chlamydia trachomatis
D/SotonD6]
gi|440532903|emb|CCP58413.1| translation initiation factor IF-3 [Chlamydia trachomatis
G/SotonG1]
Length = 175
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PPVCKIMD+ K
Sbjct: 6 RINRQIRAPRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSEPPVCKIMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 66 RYDVTKKEKDSKKAQHQVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 121 MFRGRELAYPEHGYKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 165
>gi|401564791|ref|ZP_10805658.1| translation initiation factor IF-3 [Selenomonas sp. FOBRC6]
gi|400188485|gb|EJO22647.1| translation initiation factor IF-3 [Selenomonas sp. FOBRC6]
Length = 187
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+ + VR+ EG + ++ +AL +A DLVEV KA PPVC+IMDF K
Sbjct: 2 RINEEIHIREVRVTSAEGEQLGIMLTRDALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 62 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + ++ +E G +E K I+
Sbjct: 117 MFRGRELSHPELGRAVLDRVAERMTELVTIERGAKLEGKNMTMIL 161
>gi|328955209|ref|YP_004372542.1| translation initiation factor 3 (bIF-3) [Coriobacterium glomerans
PW2]
gi|328455533|gb|AEB06727.1| bacterial translation initiation factor 3 (bIF-3) [Coriobacterium
glomerans PW2]
Length = 214
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ I A RL+ +G + V +A +A DLVE+ A PPVC++MD+ K
Sbjct: 37 RINEDITATTCRLIGVDGSQLGVFGIRDAQRIADEQGLDLVEIAPNAEPPVCRVMDYGKF 96
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ +K K K +S + + KE++F KI+ D + K V R + KG RVK
Sbjct: 97 KYQQAMKAKAARKNQSRV-----EVKEMKFRPKIDVGDFETKKGHVLRFLKKGARVKITI 151
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ + G L RL +E +VVES P +E + ++ +K
Sbjct: 152 MFRGREMAHPEQGLNVLERLAKDLESCAVVESAPKLEGRNMLMVLAPIK 200
>gi|172058199|ref|YP_001814659.1| translation initiation factor IF-3 [Exiguobacterium sibiricum
255-15]
gi|171990720|gb|ACB61642.1| translation initiation factor IF-3 [Exiguobacterium sibiricum
255-15]
Length = 176
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + V SR EAL LA DLV V +A PPVCKIMD+ K
Sbjct: 12 INEGIRAREVRLIGADGAQLGVQSRTEALRLAEEADLDLVMVAPQATPPVCKIMDYG--K 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ EL++KD+ K+ ++ KEVR S IE+ D Q K K+ ++ G +VK
Sbjct: 70 YRFELQKKDKETRKNQKVIQ---MKEVRLSPTIEENDFQTKFRNAKKFLENGNKVKASIR 126
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++G L RL + + V+E P +E + + ++
Sbjct: 127 FRGRAITHSEIGRRVLERLATELSEFGVIEQRPKMEGRSMFLVL 170
>gi|190575250|ref|YP_001973095.1| translation initiation factor IF-3 [Stenotrophomonas maltophilia
K279a]
gi|344208233|ref|YP_004793374.1| translation initiation factor IF-3 [Stenotrophomonas maltophilia
JV3]
gi|424669562|ref|ZP_18106587.1| translation initiation factor IF-3 [Stenotrophomonas maltophilia
Ab55555]
gi|190013172|emb|CAQ46805.1| putative translation initiation factor IF-3 [Stenotrophomonas
maltophilia K279a]
gi|343779595|gb|AEM52148.1| Translation initiation factor IF-3 [Stenotrophomonas maltophilia
JV3]
gi|401071633|gb|EJP80144.1| translation initiation factor IF-3 [Stenotrophomonas maltophilia
Ab55555]
Length = 180
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 10/166 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V+SR EAL++A DLVE+ +A+PPVCKIMDF K
Sbjct: 15 RKNQEIRVPRVRVIGSDGEMIGVLSRDEALSMAEDEGLDLVEIQPQADPPVCKIMDFGKF 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++ + K+ AK K+ K+ + KEV+F ++ D Q+K ++ ++ G ++K
Sbjct: 75 KFEAQ-KKASEAKKKT----KQVEIKEVKFRPVTDEGDYQIKLRKMRGFLEDGDKIKVNI 129
Query: 200 LPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I DL EDI V+ES P +E +Q +I
Sbjct: 130 RFRGREMSHQELGREMANRIETDLGEDI-VIESRPRLEGRQMVMMI 174
>gi|212638371|ref|YP_002314891.1| translation initiation factor 3 [Anoxybacillus flavithermus WK1]
gi|212559851|gb|ACJ32906.1| Translation initiation factor 3 (IF-3) [Anoxybacillus flavithermus
WK1]
Length = 180
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRLV G + + ++ EAL +A L DLV V A PPVC+IMD+ K +
Sbjct: 16 INENIRAREVRLVDPNGEQLGIKTKQEALEIAARLNLDLVMVAPNAKPPVCRIMDYGKFR 75
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KE+R S IE+ D K ++ ++KG +VK
Sbjct: 76 FEQQKKEKEARKKQKVI-----NVKEIRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 130
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + DI VE+ P ++ + + ++
Sbjct: 131 FKGRAITHKEIGQRVLDRFAEACADIGTVETAPKMDGRSMFLVL 174
>gi|312195567|ref|YP_004015628.1| translation initiation factor IF-3 [Frankia sp. EuI1c]
gi|311226903|gb|ADP79758.1| translation initiation factor IF-3 [Frankia sp. EuI1c]
Length = 182
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV EG ++ VS EA+ LA+ DLVEV A PPVCK+MDF K
Sbjct: 6 RINDRIRVPEVRLVGAEGEQIGIVSIQEAMRLAQEADLDLVEVAPTARPPVCKLMDFGKF 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ + K ++ K + + KE++ KI+ D + K V R + G +VK
Sbjct: 66 KYESDQKRREARKNQVQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKITI 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL + ++ VE+ P
Sbjct: 121 MFRGREQSRPELGIRLLQRLSTDVAELGYVEAQP 154
>gi|282859091|ref|ZP_06268222.1| translation initiation factor IF-3 [Prevotella bivia JCVIHMP010]
gi|424899082|ref|ZP_18322628.1| translation initiation factor IF-3 [Prevotella bivia DSM 20514]
gi|282588121|gb|EFB93295.1| translation initiation factor IF-3 [Prevotella bivia JCVIHMP010]
gi|388593296|gb|EIM33534.1| translation initiation factor IF-3 [Prevotella bivia DSM 20514]
Length = 227
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 27/206 (13%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I + VR++ D+G +V+ AL LA+ DLVE+ A PPVC+
Sbjct: 2 KNDKMKMQYRVNEQIRVKEVRVLSDDGAEVMPTRRALELAQHEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K + KE+RF + ++ D + K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQV----------KQEIKEIRFGPQTDEHDYKFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKKLKAVGDTSGVS 269
P K G +KK + D G +
Sbjct: 169 -----APKKTGTVKKSQQKRDREGAN 189
>gi|328947928|ref|YP_004365265.1| Translation initiation factor IF-3 [Treponema succinifaciens DSM
2489]
gi|328448252|gb|AEB13968.1| Translation initiation factor IF-3 [Treponema succinifaciens DSM
2489]
Length = 176
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ G R+N++I + +RL+ DEG + +V EAL +A+ DLVEV ANPPVCKI+
Sbjct: 3 DNKGMRVNEQIRVREIRLIDDEGEQKGIVPTIEALRMAKDRDLDLVEVSPNANPPVCKIL 62
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
DF K K+++E K +D K + + L KE+R KI DL KA V+ +++G +
Sbjct: 63 DFGKYKFEQEKKLRDSKKNQKVLKL-----KEIRMQPKIGAGDLDTKAKHVQEFLNEGDK 117
Query: 195 VKCMALPVGKKEETEDLG 212
VK G++ +LG
Sbjct: 118 VKVTIRFRGRELAHTELG 135
>gi|325917698|ref|ZP_08179889.1| bacterial translation initiation factor 3 (bIF-3) [Xanthomonas
vesicatoria ATCC 35937]
gi|325536092|gb|EGD07897.1| bacterial translation initiation factor 3 (bIF-3) [Xanthomonas
vesicatoria ATCC 35937]
Length = 154
Score = 79.3 bits (194), Expect = 4e-12, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 11 VLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 65
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 66 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEA 125
Query: 220 DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
DL EDI V+ES P +E +Q +I P KK
Sbjct: 126 DLGEDI-VIESRPRLEGRQMVMMI-----APKKK 153
>gi|386851383|ref|YP_006269396.1| translation initiation factor IF-3 [Actinoplanes sp. SE50/110]
gi|359838887|gb|AEV87328.1| Translation initiation factor IF-3 [Actinoplanes sp. SE50/110]
Length = 204
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG +V V AL LA + DLVEV A PPVCK+MDF K K
Sbjct: 1 MNEQIRAREVRLVGPEGEQVGIVPVERALQLAADVDLDLVEVAPMARPPVCKLMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ LK ++ + + + KE++ KI+ D + K V R + G +VK +
Sbjct: 61 YESALKAREARRNQQQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
G+++ +LG L RL + I ++ VE+ P
Sbjct: 116 FRGREQSRPELGFRLLRRLSEEISELGFVEASP 148
>gi|21231897|ref|NP_637814.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66767975|ref|YP_242737.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991101|ref|YP_001903111.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
campestris str. B100]
gi|21113621|gb|AAM41738.1| initiation factor IF-3 [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573307|gb|AAY48717.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
campestris str. 8004]
gi|167732861|emb|CAP51055.1| Initiation factor IF-3 [Xanthomonas campestris pv. campestris]
Length = 159
Score = 79.3 bits (194), Expect = 5e-12, Method: Composition-based stats.
Identities = 61/166 (36%), Positives = 98/166 (59%), Gaps = 15/166 (9%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VR++ +G V +SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ +
Sbjct: 4 VRVIGSDGEMVGVLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKAN 62
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK G++ +
Sbjct: 63 EAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQ 118
Query: 210 DLGGYLSRLI--DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG ++ I DL EDI V+ES P +E +Q +I P KK
Sbjct: 119 ELGREMAARIEADLGEDI-VIESRPRLEGRQMVMMI-----APKKK 158
>gi|381397057|ref|ZP_09922471.1| Translation initiation factor IF-3 [Microbacterium laevaniformans
OR221]
gi|380776016|gb|EIC09306.1| Translation initiation factor IF-3 [Microbacterium laevaniformans
OR221]
Length = 222
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHKV-VSRHE-ALALARSLQCDLVEVDRKANPPVCK 132
E S PR ND+I VRLV G +V V R E AL LA+ DLVEV + PPV K
Sbjct: 9 EFRISDPRTNDRIRVPEVRLVGPAGEQVGVVRIEVALRLAQEADLDLVEVAPNSKPPVVK 68
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
IMD+ K KY+ K K+ + +++ L KEVRF KIE D K + + G
Sbjct: 69 IMDYGKFKYEAAQKAKEARRNQANTVL-----KEVRFRLKIEAHDYTTKLKRAEGFLQAG 123
Query: 193 YRVKCMALPVGKKEETEDLGGYLSRLIDLIEDIS---VVESGPHVERKQAYAII 243
+VK M L G+++ + G L R ED++ VES P ++ + +I
Sbjct: 124 DKVKAMILFRGREQSRPEQGVRLLR--KFAEDVAEYGTVESNPTIDGRNMVMVI 175
>gi|346312334|ref|ZP_08854322.1| translation initiation factor IF-3 [Collinsella tanakaei YIT 12063]
gi|345898628|gb|EGX68501.1| translation initiation factor IF-3 [Collinsella tanakaei YIT 12063]
Length = 200
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 8/178 (4%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPV 130
KD ++ R+ND+I RL+ +G ++ +A +A DLVE+ ANPPV
Sbjct: 14 KDIAKSDDTRINDEITGTTCRLIGVDGSQLGLFGIRDAQRVADEQGLDLVEIAPNANPPV 73
Query: 131 CKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMD 190
C++MD+ K KYQ+ +K K K +S + + KE++F KI+ D + K V R +
Sbjct: 74 CRVMDYGKFKYQQAMKAKQARKNQSKV-----EVKEMKFRPKIDVGDYETKKGHVLRFLK 128
Query: 191 KGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
KG RVK + G++ + G L RL + ++ + VES P +E + ++ +K
Sbjct: 129 KGARVKVTIMFRGREMAHPEQGLNVLERLSEDLKQYATVESAPKLEGRNMLMLLAPIK 186
>gi|38233750|ref|NP_939517.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
NCTC 13129]
gi|38200011|emb|CAE49680.1| translation initiation factor IF-3 [Corynebacterium diphtheriae]
Length = 167
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I VRLV G +V V +A LA DLVEV A PPVCKIMD+ K K
Sbjct: 1 MNERIRVPEVRLVGPNGEQVGIVRIDDARKLAYEADLDLVEVAPNAKPPVCKIMDYGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K ++ K + + KE +F KI+ D + K + V R ++KG +VK +
Sbjct: 61 YEQAQKAREARKNQQQTVV-----KEQKFRPKIDDHDYETKKNNVIRFLEKGSKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
G+++ +LG L RL + + +VES P + + + FGP++KG
Sbjct: 116 FRGREQSRPELGFRLLERLAGDVAEYGIVESKPKQDGRNMTMV-----FGPARKG 165
>gi|422439839|ref|ZP_16516659.1| translation initiation factor IF-3 [Propionibacterium acnes
HL037PA3]
gi|422471924|ref|ZP_16548415.1| translation initiation factor IF-3 [Propionibacterium acnes
HL037PA2]
gi|422573677|ref|ZP_16649238.1| translation initiation factor IF-3 [Propionibacterium acnes
HL044PA1]
gi|313836584|gb|EFS74298.1| translation initiation factor IF-3 [Propionibacterium acnes
HL037PA2]
gi|314928094|gb|EFS91925.1| translation initiation factor IF-3 [Propionibacterium acnes
HL044PA1]
gi|314972094|gb|EFT16191.1| translation initiation factor IF-3 [Propionibacterium acnes
HL037PA3]
Length = 266
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+N++I VRLV G +V V +AL LAR DLVEV +A PPV K+MD
Sbjct: 41 STEPRINERIRVPEVRLVGPNGEQVGIVRVEQALQLAREQDLDLVEVAPQARPPVVKLMD 100
Query: 136 FHKEKYQ--KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+ K KY+ ++ +E R +A S I KE++ KI+ D + K V R + G
Sbjct: 101 YGKFKYEAAQKARESRRNQANSII-------KEMKLRPKIDDHDYETKKGHVLRFLKAGD 153
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK + G+++ +LG L RL D + + + VES P E + I+
Sbjct: 154 KVKITIMFRGREQSRPELGVNLLRRLADDLTEYATVESPPKQEGRNMLMIL 204
>gi|373499793|ref|ZP_09590193.1| hypothetical protein HMPREF9140_00311 [Prevotella micans F0438]
gi|371956362|gb|EHO74150.1| hypothetical protein HMPREF9140_00311 [Prevotella micans F0438]
Length = 231
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 114/220 (51%), Gaps = 23/220 (10%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I+ + VR+V +EG +V+ +A+ +A DLVE+ A PPVC+
Sbjct: 2 KNDKMKLKYRVNEQIHVKEVRVVTEEGAEVMPTRKAMDMAHKEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
++D+ K +K+QKE+K+K K + KE+RF + ++ D Q K +
Sbjct: 62 LIDYSKFLYQQKKHQKEMKQKQ----------VKQEVKEIRFGPQTDEHDYQFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ +G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLSQGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPRLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVD 283
K G +KK ++ + + A + +E+SVD
Sbjct: 169 TPKKAGVTKKSQQRRDREEAQNEA-REIAARAEQVEKSVD 207
>gi|383766701|ref|YP_005445682.1| translation initiation factor IF-3 [Phycisphaera mikurensis NBRC
102666]
gi|381386969|dbj|BAM03785.1| translation initiation factor IF-3 [Phycisphaera mikurensis NBRC
102666]
Length = 248
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 82 RLNDKINAQFVRLVL--DEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I + VRL+ DE V++ EA AR DLVEV +PPVCKIMD+ K
Sbjct: 33 RVNDQIRSSPVRLIGEGDEAVGVIATDEAKRRAREAGLDLVEVSPNGDPPVCKIMDYGKW 92
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY ++ KE+ KAKS KK + K +R I+ DL +K + +D G +V+ +
Sbjct: 93 KYAQQKKEQ---KAKSHA--KKSELKGMRLRPNIDSHDLGLKVRKAREFLDDGDKVQFVM 147
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHV 234
L G++ DL + + + +ED+ +E P +
Sbjct: 148 LFRGRQMAHRDLARNTMMGVFEDLEDVGKIEQAPKM 183
>gi|14194837|sp|Q9PFE1.2|IF3_XYLFA RecName: Full=Translation initiation factor IF-3
Length = 180
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 99/165 (60%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V +SR EALA+A DLVE+ +A+PPVCK+M+F K
Sbjct: 15 RKNHEIRVPRVRVIGSDGEMVGVLSRDEALAMAEKEGLDLVEIQPQADPPVCKVMNFGKF 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ K+ + AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK
Sbjct: 75 KFEQQ-KKANEAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKINI 129
Query: 200 LPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I++ + D V+ES P +E +Q ++
Sbjct: 130 RFRGREMSHQELGRQMATRIEMDLGDDVVIESRPRLEGRQMVMMV 174
>gi|260546221|ref|ZP_05821961.1| translation initiation factor IF-3 [Brucella abortus NCTC 8038]
gi|260563021|ref|ZP_05833507.1| translation initiation factor IF-3 [Brucella melitensis bv. 1 str.
16M]
gi|260567412|ref|ZP_05837882.1| translation initiation factor IF-3 [Brucella suis bv. 4 str. 40]
gi|260755791|ref|ZP_05868139.1| translation initiation factor IF-3 [Brucella abortus bv. 6 str.
870]
gi|260759014|ref|ZP_05871362.1| translation initiation factor IF-3 [Brucella abortus bv. 4 str.
292]
gi|260760739|ref|ZP_05873082.1| translation initiation factor IF-3 [Brucella abortus bv. 2 str.
86/8/59]
gi|260884815|ref|ZP_05896429.1| translation initiation factor IF-3 [Brucella abortus bv. 9 str.
C68]
gi|261215066|ref|ZP_05929347.1| translation initiation factor IF-3 [Brucella abortus bv. 3 str.
Tulya]
gi|261217936|ref|ZP_05932217.1| translation initiation factor IF-3 [Brucella ceti M13/05/1]
gi|261221165|ref|ZP_05935446.1| translation initiation factor IF-3 [Brucella ceti B1/94]
gi|261314848|ref|ZP_05954045.1| translation initiation factor IF-3 [Brucella pinnipedialis
M163/99/10]
gi|261316593|ref|ZP_05955790.1| translation initiation factor IF-3 [Brucella pinnipedialis B2/94]
gi|261321214|ref|ZP_05960411.1| translation initiation factor IF-3 [Brucella ceti M644/93/1]
gi|261324056|ref|ZP_05963253.1| translation initiation factor IF-3 [Brucella neotomae 5K33]
gi|261751258|ref|ZP_05994967.1| translation initiation factor IF-3 [Brucella suis bv. 5 str. 513]
gi|261755823|ref|ZP_05999532.1| translation initiation factor IF-3 [Brucella suis bv. 3 str. 686]
gi|261759051|ref|ZP_06002760.1| translation initiation factor IF-3 [Brucella sp. F5/99]
gi|265983114|ref|ZP_06095849.1| translation initiation factor IF-3 [Brucella sp. 83/13]
gi|265992140|ref|ZP_06104697.1| translation initiation factor IF-3 [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993878|ref|ZP_06106435.1| translation initiation factor IF-3 [Brucella melitensis bv. 3 str.
Ether]
gi|265997125|ref|ZP_06109682.1| translation initiation factor IF-3 [Brucella ceti M490/95/1]
gi|265999247|ref|ZP_06111613.1| translation initiation factor IF-3 [Brucella melitensis bv. 2 str.
63/9]
gi|294851343|ref|ZP_06792016.1| translation initiation factor IF-3 [Brucella sp. NVSL 07-0026]
gi|297247343|ref|ZP_06931061.1| translation initiation factor IF-3 [Brucella abortus bv. 5 str.
B3196]
gi|260096328|gb|EEW80204.1| translation initiation factor IF-3 [Brucella abortus NCTC 8038]
gi|260153037|gb|EEW88129.1| translation initiation factor IF-3 [Brucella melitensis bv. 1 str.
16M]
gi|260156930|gb|EEW92010.1| translation initiation factor IF-3 [Brucella suis bv. 4 str. 40]
gi|260669332|gb|EEX56272.1| translation initiation factor IF-3 [Brucella abortus bv. 4 str.
292]
gi|260671171|gb|EEX57992.1| translation initiation factor IF-3 [Brucella abortus bv. 2 str.
86/8/59]
gi|260675899|gb|EEX62720.1| translation initiation factor IF-3 [Brucella abortus bv. 6 str.
870]
gi|260874343|gb|EEX81412.1| translation initiation factor IF-3 [Brucella abortus bv. 9 str.
C68]
gi|260916673|gb|EEX83534.1| translation initiation factor IF-3 [Brucella abortus bv. 3 str.
Tulya]
gi|260919749|gb|EEX86402.1| translation initiation factor IF-3 [Brucella ceti B1/94]
gi|260923025|gb|EEX89593.1| translation initiation factor IF-3 [Brucella ceti M13/05/1]
gi|261293904|gb|EEX97400.1| translation initiation factor IF-3 [Brucella ceti M644/93/1]
gi|261295816|gb|EEX99312.1| translation initiation factor IF-3 [Brucella pinnipedialis B2/94]
gi|261300036|gb|EEY03533.1| translation initiation factor IF-3 [Brucella neotomae 5K33]
gi|261303874|gb|EEY07371.1| translation initiation factor IF-3 [Brucella pinnipedialis
M163/99/10]
gi|261739035|gb|EEY27031.1| translation initiation factor IF-3 [Brucella sp. F5/99]
gi|261741011|gb|EEY28937.1| translation initiation factor IF-3 [Brucella suis bv. 5 str. 513]
gi|261745576|gb|EEY33502.1| translation initiation factor IF-3 [Brucella suis bv. 3 str. 686]
gi|262551593|gb|EEZ07583.1| translation initiation factor IF-3 [Brucella ceti M490/95/1]
gi|262764859|gb|EEZ10780.1| translation initiation factor IF-3 [Brucella melitensis bv. 3 str.
Ether]
gi|263003206|gb|EEZ15499.1| translation initiation factor IF-3 [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092845|gb|EEZ17020.1| translation initiation factor IF-3 [Brucella melitensis bv. 2 str.
63/9]
gi|264661706|gb|EEZ31967.1| translation initiation factor IF-3 [Brucella sp. 83/13]
gi|294819932|gb|EFG36931.1| translation initiation factor IF-3 [Brucella sp. NVSL 07-0026]
gi|297174512|gb|EFH33859.1| translation initiation factor IF-3 [Brucella abortus bv. 5 str.
B3196]
Length = 196
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 19/200 (9%)
Query: 49 AVKTPNDFCNNVR--FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG--HKVVS 104
AV N +R F A PVQ KD GPR N I V+L+ EG H VS
Sbjct: 8 AVDVNNQEITTIRRPFRATPVQ----KD-----GPRSNRDIRVPRVQLIDAEGQNHGDVS 58
Query: 105 RHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDC 164
EA+A+A DLVE+ A PPVCKI+D K KYQ + K + K + + +
Sbjct: 59 IQEAMAMAEEAGLDLVEIVPNAEPPVCKIVDLGKLKYQNQKKAAEARKKQKTV-----EI 113
Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIE 223
KE++ I+ D ++K +R ++G +VK G++ ++LG L R+ +
Sbjct: 114 KEIKMRPNIDTHDYEVKMKAAQRFFEEGDKVKVTLRFRGREMAHQELGMKLLQRVKEDTV 173
Query: 224 DISVVESGPHVERKQAYAII 243
+I+ VES P +E +Q ++
Sbjct: 174 EIAKVESEPKLEGRQMMMVL 193
>gi|78211640|ref|YP_380419.1| translation initiation factor IF-3 [Synechococcus sp. CC9605]
gi|123756979|sp|Q3ANG8.1|IF3_SYNSC RecName: Full=Translation initiation factor IF-3
gi|78196099|gb|ABB33864.1| translation initiation factor IF-3 [Synechococcus sp. CC9605]
Length = 217
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+SR EAL +AR + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDSDGAQLGVISREEALDVARDRELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ +R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + L L R+ +E+ + ++ P E
Sbjct: 132 VIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKRE 169
>gi|442743178|ref|YP_007374482.1| translation initiation factor 3 [Candidatus Uzinura diaspidicola
str. ASNER]
gi|442739246|gb|AGC66942.1| translation initiation factor 3 [Candidatus Uzinura diaspidicola
str. ASNER]
Length = 173
Score = 79.0 bits (193), Expect = 5e-12, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 79 SGPRLNDKINAQFVRLVLDE-GHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
S P +N++I +R+V D+ +++ S EAL +A L DLVE+ K PPVCK ++
Sbjct: 7 SIPLVNEQITNLEIRIVGDDIENRIYSLREALDIAHDLGLDLVEITAKVYPPVCKFFNYK 66
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K Y K+ ++K KA+ + KE+RFS D + K +V+ +++G++VK
Sbjct: 67 KFLYIKKRRQKKFNKARQARLI----VKEMRFSPHTSNHDYEFKRKSVRNFLEEGFKVKS 122
Query: 198 MALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G+ + G L RL + +ED S +E P +E K+ + I+
Sbjct: 123 LVFFKGRSIIYRNQGRILLLRLANDLEDCSNIEKMPSMEGKRMFLIL 169
>gi|336179141|ref|YP_004584516.1| translation initiation factor IF-3 [Frankia symbiont of Datisca
glomerata]
gi|334860121|gb|AEH10595.1| Translation initiation factor IF-3 [Frankia symbiont of Datisca
glomerata]
Length = 214
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV EG ++ V+ EA+ LA+ DLVEV A PPVCK+MD+ K
Sbjct: 37 RINDRIRVPEVRLVGPEGEQIGIVAIAEAMRLAQEADLDLVEVAPTARPPVCKLMDYGKF 96
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ + K ++ K + + KE++ KI+ D + K V R + G +VK
Sbjct: 97 KYESDQKRREARKNQVQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLRAGDKVKITI 151
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL + D+ VE+ P
Sbjct: 152 MFRGREQSRPELGIRLLQRLSTDVADLGYVEAQP 185
>gi|294791033|ref|ZP_06756191.1| translation initiation factor IF-3 [Scardovia inopinata F0304]
gi|294458930|gb|EFG27283.1| translation initiation factor IF-3 [Scardovia inopinata F0304]
Length = 259
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ +G +V V AL LAR DLVEV A PPV K++D+ K KY +++K +
Sbjct: 1 MRLIGPQGEQVGIVKTTIALNLAREANLDLVEVSAHAKPPVAKLIDYGKYKYNEKIKARQ 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +S + KE RF KI+ D ++K + V R ++ G +VK + G +E++
Sbjct: 61 ARRNQST-----AEVKETRFRLKIDDHDFEVKKNQVSRFLEGGDKVKVSIMLRG-REQSR 114
Query: 210 DLGG--YLSRLIDLIEDISVVESGPH 233
+GG L RL D +E+ VES P
Sbjct: 115 PVGGIELLQRLADEVEEFGSVESAPR 140
>gi|194366577|ref|YP_002029187.1| translation initiation factor IF-3 [Stenotrophomonas maltophilia
R551-3]
gi|194349381|gb|ACF52504.1| translation initiation factor IF-3 [Stenotrophomonas maltophilia
R551-3]
Length = 180
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 10/166 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V++R EAL++A DLVE+ +A+PPVCKIMDF K
Sbjct: 15 RKNQEIRVPRVRVIGSDGEMIGVLTRDEALSMAEDEGLDLVEIQPQADPPVCKIMDFGKF 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++ + K+ AK K+ K+ + KEV+F ++ D Q+K ++ +++G ++K
Sbjct: 75 KFEAQ-KKASEAKKKT----KQVEIKEVKFRPVTDEGDYQIKLRKMRGFLEEGDKIKVNI 129
Query: 200 LPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I DL EDI V+ES P +E +Q +I
Sbjct: 130 RFRGREMSHQELGREMANRIETDLGEDI-VIESRPRLEGRQMVMMI 174
>gi|349700351|ref|ZP_08901980.1| translation initiation factor IF-3 [Gluconacetobacter europaeus LMG
18494]
Length = 173
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+N++I VRL+ +EG ++S +ALA A S+ DL+E+ A PPV K++D+
Sbjct: 9 GPRVNEEIRVPQVRLIDEEGEMLGIMSTRDALARAYSVGLDLLEISPNAEPPVAKVLDYG 68
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+++ K+++ A+ K + + KEV+ I++ D Q+K +K + +G +VK
Sbjct: 69 KFKYEQQ-KKRNEARKKQKVI----EIKEVKVRPNIDENDYQVKMRAMKTFIGEGDKVKV 123
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ +++++ VE P +E +Q ++
Sbjct: 124 TLRFRGREMAHQDLGVKVLERIRAEMDEVAKVEHMPKLENRQMIMVL 170
>gi|302528048|ref|ZP_07280390.1| translation initiation factor IF-3 [Streptomyces sp. AA4]
gi|302436943|gb|EFL08759.1| translation initiation factor IF-3 [Streptomyces sp. AA4]
Length = 201
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S R+ND+I VRLV G +V V +AL LA+ DLVEV +A PPV K+MD
Sbjct: 19 SSETRINDRIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVAKLMD 78
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K KY+ K +D ++ +T+ KE + KI+Q D + K V R + G +V
Sbjct: 79 FGKFKYESAQKARD-SRRNQHLTV----IKEQKLRPKIDQHDYETKKGHVSRFLAAGNKV 133
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L +L D + ++ VES P
Sbjct: 134 KVTIMFRGREQSRPELGFRLLQKLADDVTELGFVESSP 171
>gi|265987665|ref|ZP_06100222.1| translation initiation factor IF-3 [Brucella pinnipedialis
M292/94/1]
gi|264659862|gb|EEZ30123.1| translation initiation factor IF-3 [Brucella pinnipedialis
M292/94/1]
Length = 196
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 19/200 (9%)
Query: 49 AVKTPNDFCNNVR--FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG--HKVVS 104
AV N +R F A PVQ KD GPR N I V+L+ EG H VS
Sbjct: 8 AVDVNNQEITTIRRPFRATPVQ----KD-----GPRSNRDIRVPRVQLIDAEGQNHGDVS 58
Query: 105 RHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDC 164
EA+A+A DLVE+ A PPVCKI+D K KYQ + K + K + + +
Sbjct: 59 IQEAMAMAEEAGLDLVEIVPNAEPPVCKIVDLGKLKYQNQKKAAEARKKQRTV-----EI 113
Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIE 223
KE++ I+ D ++K +R ++G +VK G++ ++LG L R+ +
Sbjct: 114 KEIKMRPNIDTHDYEVKMKAAQRFFEEGDKVKVTLRFRGREMAHQELGMKLLQRVKEDTV 173
Query: 224 DISVVESGPHVERKQAYAII 243
+I+ VES P +E +Q ++
Sbjct: 174 EIAKVESEPKLEGRQMMMVL 193
>gi|238927111|ref|ZP_04658871.1| translation initiation factor IF3 [Selenomonas flueggei ATCC 43531]
gi|238885091|gb|EEQ48729.1| translation initiation factor IF3 [Selenomonas flueggei ATCC 43531]
Length = 188
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+ + VR+ EG + ++ +AL +A DLVEV KA PPVC+IMDF K
Sbjct: 2 RINEEIHIREVRVTSAEGEQLGIMLTRDALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R ++G +VK
Sbjct: 62 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFAEEGNKVKVTI 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + D+ +E G +E K I+
Sbjct: 117 MFRGRELSHPELGRAVLDRVSERLGDLVSIERGAKLEGKNMTMIL 161
>gi|317502973|ref|ZP_07961062.1| translation initiation factor IF3 [Prevotella salivae DSM 15606]
gi|315665909|gb|EFV05487.1| translation initiation factor IF3 [Prevotella salivae DSM 15606]
Length = 230
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 27/195 (13%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V ++G +VV +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKLKNQYRINEQIRVREVRIVGEDGSEVVPTRKALDMARQNGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
++D+ K +K+QKE+K+K K + KE+RF + ++ D Q K +
Sbjct: 62 LIDYSKFLYQQKKHQKEMKQKQV----------KVEVKEIRFGPQTDEHDYQFKLKHARE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G +V+ G+ KE+ E L L R + +E+ VE P +E K+ + +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEFGKVEQMPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKK 258
P K G +KK
Sbjct: 169 -----APKKVGVVKK 178
>gi|319898238|ref|YP_004158331.1| translation initiation factor IF-3 [Bartonella clarridgeiae 73]
gi|319402202|emb|CBI75733.1| translation initiation factor IF-3 [Bartonella clarridgeiae 73]
Length = 164
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N I V+L+ DEG +V+ EALA A + DLVE+ A PPVCKI+D K
Sbjct: 2 RSNQDIRVPRVQLINDEGQNQGIVTIQEALARAADIGLDLVEIVPNAEPPVCKIVDLGKL 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ + K + K + I + KE++ ++ D ++K ++R +D G +VK
Sbjct: 62 KYQNQKKAAETRKKQKIIEI-----KEIKMRPNVDVHDYEVKLRAIRRFIDNGDKVKITL 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ + +I+ +ES P E +Q +I
Sbjct: 117 RFRGREMTHQDLGIKLLQRVKENTNEIAKIESEPKFEGRQIMMVI 161
>gi|288924995|ref|ZP_06418931.1| translation initiation factor IF-3 [Prevotella buccae D17]
gi|288338185|gb|EFC76535.1| translation initiation factor IF-3 [Prevotella buccae D17]
Length = 221
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 27/207 (13%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK--- 138
R+N++I + VR+V D G +V+ +AL +AR DLVE+ A PPVC+++D+ K
Sbjct: 6 RVNEQIRVREVRVVSDGGSEVIPTRKALDMARQQGVDLVEISPNAQPPVCRLIDYSKFLY 65
Query: 139 --EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
+K+QKE+K+K K + KE+RF + ++ D Q K + +++G +V+
Sbjct: 66 QQKKHQKEMKQKQ----------VKVEIKEIRFGPQTDEHDYQFKLKHAQEFLNEGNKVR 115
Query: 197 CMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
G+ KE+ E L L R + +E+ VE P +E K+ + + P K
Sbjct: 116 AYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPKLEGKKMFLYM-----APKK 167
Query: 253 KGGLKKLKAVGDTSGVSKAATPSSTIE 279
G +KK + D A +S +E
Sbjct: 168 TGVVKKSQQKMDRERREAEAKAASEVE 194
>gi|373112116|ref|ZP_09526349.1| translation initiation factor IF-3 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
gi|371656194|gb|EHO21525.1| translation initiation factor IF-3 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
Length = 164
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+NDKI + R++ +G + V+S EAL +A DLVE+ A PPVCKIM+F K
Sbjct: 8 RINDKIRGKEFRIIGADGEQLGVMSAAEALEIAAGQDLDLVEIAANAKPPVCKIMNFGKY 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++E K K+ K + K+ KEV+ + +I+ DL K + +++ ++K +VK
Sbjct: 68 RYEQERKAKEAKKNQ-----KQTIVKEVKVTARIDVHDLDTKVNQIQKFLEKDNKVKVTL 122
Query: 200 LPVGKKE 206
+ G+++
Sbjct: 123 VLFGREK 129
>gi|384428404|ref|YP_005637764.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
raphani 756C]
gi|341937507|gb|AEL07646.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
raphani 756C]
Length = 147
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 4 VLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 58
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 59 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEA 118
Query: 220 DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
DL EDI V+ES P +E +Q +I P KK
Sbjct: 119 DLGEDI-VIESRPRLEGRQMVMMI-----APKKK 146
>gi|262341224|ref|YP_003284079.1| translation initiation factor IF-3 [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272561|gb|ACY40469.1| translation initiation factor IF-3 [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 174
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 14/182 (7%)
Query: 71 QKKDEKETSGPRLNDKINAQFVRLVLDEG---HKVVSRHEALALARSLQCDLVEVDRKAN 127
QKK+E R+N+ I+++ VRLV D + + S EAL AR + DLVE++ K +
Sbjct: 3 QKKEEH-----RMNENIDSKRVRLVGDSSVVENGIYSIQEALQFARERELDLVEINPKLD 57
Query: 128 PPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
PPVCKI+D Y+K L E+ + K + K + KE+RF +I D ++K + ++
Sbjct: 58 PPVCKILD-----YKKFLYEQKKRKKQFKAKQIKVNTKEIRFGPQIGDHDGKVKIKSAEK 112
Query: 188 LMDKGYRVKCMALPVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAIIRHV 246
+ +G +VK G+ +D G L + + IE+ VE P +E K+ Y I+
Sbjct: 113 FLMRGDKVKVFVFFKGRSIVYKDQGKIKLLKFAEEIEEYGKVEQMPVMEGKRMYMILAPK 172
Query: 247 KF 248
KF
Sbjct: 173 KF 174
>gi|406990071|gb|EKE09761.1| translation initiation factor IF-3 [uncultured bacterium]
Length = 176
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 73 KDEKETS--GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANP 128
KD+K T+ GPR+N+KI + VRLV + G ++S+ EAL A DLVEV A+P
Sbjct: 2 KDDKGTASNGPRVNEKITSFKVRLVNENGEMLGILSQKEALEKAFQAGLDLVEVSPNADP 61
Query: 129 PVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRL 188
PVCKI+D+ K +++++ + + K + I + KE++ I++ D ++K + ++
Sbjct: 62 PVCKILDYGKYRFEEQKRRAEMRKKQKVI-----EIKEIQLRPGIDKHDFEVKMRSARKF 116
Query: 189 MDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G ++K G++ ++LG L R+ + ++DI+ +E P E K+ I+
Sbjct: 117 IEEGDKLKVTLRFRGRELSHQELGMDVLKRVKEALQDITKIEHDPKFEGKRVIMIL 172
>gi|347760505|ref|YP_004868066.1| translation initiation factor 3 [Gluconacetobacter xylinus NBRC
3288]
gi|347579475|dbj|BAK83696.1| translation initiation factor 3 [Gluconacetobacter xylinus NBRC
3288]
Length = 173
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+N++I VRL+ +EG ++S +ALA A S+ DL+E+ A PPV K++D+
Sbjct: 9 GPRVNEEIRVPQVRLIDEEGEMLGIMSTRDALARAYSVGLDLLEISPNAEPPVAKVLDYG 68
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+++ K+++ A+ K + + KEV+ I++ D Q+K +K + +G +VK
Sbjct: 69 KFKYEQQ-KKRNEARKKQKVI----EIKEVKVRPNIDENDYQVKMRAMKTFIGEGDKVKV 123
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ +++++ VE P +E +Q ++
Sbjct: 124 TLRFRGREMAHQDLGVKVLERIRAEMDELAKVEHMPKLENRQMIMVL 170
>gi|291277002|ref|YP_003516774.1| translation initiation factor IF-3 [Helicobacter mustelae 12198]
gi|290964196|emb|CBG40042.1| translation initiation factor IF-3 [Helicobacter mustelae 12198]
Length = 185
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 12/158 (7%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN +I+ + VR V D+G + ++S EA +A S DLV + ANPPVCK+MD+ K +
Sbjct: 8 LNQEIHFKEVRCVGDDGEVYGIISSSEAQKIANSKGLDLVLISPNANPPVCKVMDYGKYR 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ E K+K+ K + I + KE++ S +I Q D+ K + + + VK +
Sbjct: 68 YQLEKKQKEARKKQKQIEI-----KEIKLSTQIAQNDINYKVKHAREFIAEQKHVKFKVV 122
Query: 201 PVGKKEETED-LGGY--LSRLIDLIEDISVVESGPHVE 235
G+ ET D GG+ L R+ ++EDI+ E P VE
Sbjct: 123 LKGR--ETSDPQGGFEVLRRIAGMVEDIATPEKEPRVE 158
>gi|32129608|sp|Q87AB3.1|IF3_XYLFT RecName: Full=Translation initiation factor IF-3
Length = 180
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 99/165 (60%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V+SR EALA+A DLVE+ +A+PPVCK+M+F K
Sbjct: 15 RKNHEIRVPRVRVIGSDGEMIGVLSRDEALAMAEKEGLDLVEIQPQADPPVCKVMNFGKF 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ K+ + AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK
Sbjct: 75 KFEQQ-KKANEAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKINI 129
Query: 200 LPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I++ + D V+ES P +E +Q ++
Sbjct: 130 RFRGREMSHQELGRQMAARIEMDLGDDVVIESRPRLEGRQMVMMV 174
>gi|430749280|ref|YP_007212188.1| translation initiation factor IF-3 [Thermobacillus composti KWC4]
gi|430733245|gb|AGA57190.1| translation initiation factor IF-3 [Thermobacillus composti KWC4]
Length = 187
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV +G ++ + EAL +A + DLV V A PPVC+IMD+ K +
Sbjct: 21 INEEIRAREVRLVGPDGEQIGIKPFREALQMAIDMDMDLVNVAPMAKPPVCRIMDYGKFR 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D Q+K V + + +G +VK
Sbjct: 81 YEQQKKEKEARKNQKIV-----DVKEVWFRANIEEHDYQVKYRNVVKFLGEGNKVKASVR 135
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L RL + D+ VVE P +E + I+
Sbjct: 136 FRGREITHAEIGQRILDRLRSEVADLCVVERVPKLEGRSMVMIL 179
>gi|154245880|ref|YP_001416838.1| translation initiation factor IF-3 [Xanthobacter autotrophicus Py2]
gi|238686715|sp|A7IGN8.1|IF3_XANP2 RecName: Full=Translation initiation factor IF-3
gi|154159965|gb|ABS67181.1| translation initiation factor IF-3 [Xanthobacter autotrophicus Py2]
Length = 174
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 96/170 (56%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E GPR+N++I + V+L+ +G VV+ +AL LA+ DLVE+ + PPVCKI+
Sbjct: 7 EKDGPRVNEEIRIREVQLIDQDGQNRGVVAIRDALTLAQEAGLDLVEISPNSAPPVCKIL 66
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ + KYQ + K+ A+ K + + KE++ I+ D ++K +++R ++G +
Sbjct: 67 DYGRFKYQNQ-KKASEARKKQKVV----EVKEIKLRPGIDTHDYEVKMRSMERFFEEGDK 121
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +D+G L +L + + I+ VE+ P +E +Q I+
Sbjct: 122 VKVTLRFRGREMAHQDIGFKLLQKLKEDVAAIAKVEAEPMLEGRQMIMIL 171
>gi|345883982|ref|ZP_08835400.1| hypothetical protein HMPREF0666_01576 [Prevotella sp. C561]
gi|345043188|gb|EGW47269.1| hypothetical protein HMPREF0666_01576 [Prevotella sp. C561]
Length = 226
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I + VR+V D+G +V+ +AL LA DLVE+ A PPVC+
Sbjct: 2 KNDKMKMKYRVNEQIRVREVRVVSDDGAEVMPTRKALELAHQAGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K + KE+RF + ++ D + K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQV----------KQEVKEIRFGPQTDEHDYKFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++ G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLNAGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKKLKAVGDTSGVSKAA 272
K G +KK K+ + + +GV AA
Sbjct: 169 APKKAGVAKKSQQKRDREEAE-AGVKAAA 196
>gi|163839501|ref|YP_001623906.1| translation initiation factor IF-3 [Renibacterium salmoninarum ATCC
33209]
gi|162952977|gb|ABY22492.1| translation initiation factor IF-3 [Renibacterium salmoninarum ATCC
33209]
Length = 353
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MDF K KY+ +K ++
Sbjct: 1 MRLVGPAGEQVGIVRIEDALRLAAESDLDLVEVAPMAKPPVCKLMDFGKYKYEAAVKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K +++ L KE+RF KI++ D + K R + G +VK M G++++
Sbjct: 61 ARKNQTNTVL-----KEIRFRLKIDKHDYETKTGHALRFLGAGDKVKAMIQFRGREQQRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++G L+R + + ++ VES P ++ + +I
Sbjct: 116 EMGIRLLNRFAEDVTEVGAVESTPRIDGRNMVMVI 150
>gi|188996618|ref|YP_001930869.1| translation initiation factor IF-3 [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931685|gb|ACD66315.1| translation initiation factor IF-3 [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 168
Score = 79.0 bits (193), Expect = 7e-12, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 8/159 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VRL+ DEG VV EAL LAR DLVEV ANPPVCKIMD+ K
Sbjct: 5 RINNQIRVKEVRLIDDEGKNLGVVPIEEALRLAREKNLDLVEVSPNANPPVCKIMDYGKY 64
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ KEK+ K + D KE++F IE+ D + K ++ + G +V+
Sbjct: 65 KFEQKKKEKEAKKKQ-----HVQDVKEMKFKLNIEKHDYETKIKHIRDFIQDGDKVRVWI 119
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERK 237
G++ +LG L+ R+I+ + DI+VVE P E K
Sbjct: 120 WFRGRENVHPELGDKLAQRIIEDVSDIAVVEKPPVKEGK 158
>gi|433608356|ref|YP_007040725.1| Translation initiation factor IF-3 [Saccharothrix espanaensis DSM
44229]
gi|407886209|emb|CCH33852.1| Translation initiation factor IF-3 [Saccharothrix espanaensis DSM
44229]
Length = 205
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV +A PPVCK+MD
Sbjct: 12 STEPRINDRIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAAQARPPVCKLMD 71
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K ++ ++ +T+ KE + KI+ D K V R + G +V
Sbjct: 72 YGKFKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDPHDYLTKKGHVARFLSHGNKV 126
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L RL + + ++ VES P
Sbjct: 127 KVTIMFRGREQSRPELGYRLLQRLAEDVAELGFVESNP 164
>gi|313884895|ref|ZP_07818647.1| translation initiation factor IF-3 [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619586|gb|EFR31023.1| translation initiation factor IF-3 [Eremococcus coleocola
ACS-139-V-Col8]
Length = 175
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 94/166 (56%), Gaps = 12/166 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ +R++ D G + V S ++AL +A S + DLV V A PPV +IMD+ K +
Sbjct: 12 INEQIRARELRVIGDNGDQLGVKSLNDALTIAESFELDLVLVSPNAQPPVARIMDYGKYR 71
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ + KEK++ K + K + KE+R S IE+ D Q K + ++KG +VK
Sbjct: 72 FELQKKEKEQRKNQ-----KVVNVKEIRLSPSIEEHDYQTKLRQAIKFLEKGDKVKVSIR 126
Query: 201 PVGKKEETEDLGGYLSRLIDLIED---ISVVESGPHVERKQAYAII 243
G+ +DLG + L D IED ++ VES P +E + + I+
Sbjct: 127 FRGRAITHKDLGRDV--LEDFIEDTAEVATVESKPKMEGRSMFMIL 170
>gi|284033334|ref|YP_003383265.1| translation initiation factor IF-3 [Kribbella flavida DSM 17836]
gi|283812627|gb|ADB34466.1| translation initiation factor IF-3 [Kribbella flavida DSM 17836]
Length = 240
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +AL LA+ DLVEV A PPVCK+MDF K
Sbjct: 17 RVNERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAATARPPVCKLMDFGKY 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ + +++ + KE++ KI+ D + K V R + G +VK
Sbjct: 77 KYETAQKARESRRNQTNTVI-----KEMKLRPKIDPHDYETKKGHVVRFLRAGDKVKITI 131
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ G+++ +LG L RL + + ++ VES P + + ++ GP KK
Sbjct: 132 MFRGREQSRPELGFRLLQRLAEDVSELGFVESSPRQDGRNMIMVL-----GPHKK 181
>gi|294084801|ref|YP_003551561.1| initiation factor 3 [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664376|gb|ADE39477.1| Initiation factor 3 [Candidatus Puniceispirillum marinum IMCC1322]
Length = 171
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+N I A VR + +G + V+ +A+ A DLVEV +PPVCKI+D+
Sbjct: 6 DGPRVNGAIRAPQVRCIDPDGGQLGVLDTRDAINKAEDFGLDLVEVQPNVDPPVCKILDY 65
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ + K + + K I + KE++ I++ D Q+K V + + G +VK
Sbjct: 66 GKYKYEAQ-KRANETRKKQKII----EVKEIKLRPNIDEHDYQVKMRAVNKFLGSGDKVK 120
Query: 197 CMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ D ED++ VES P +E +Q +I
Sbjct: 121 VTLRFRGREMAHQELGANVLKRVRDETEDVAKVESHPKMEGRQMIMVI 168
>gi|219117177|ref|XP_002179383.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409274|gb|EEC49206.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 186
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 13/171 (7%)
Query: 81 PRLNDKINAQFVRLVL------DEGHKVVSRHEALALARSLQ-CDLVEVDRKANPPVCKI 133
P +N +I + +R+V DE ++SR EALA A+ + DL+ V+ ++PPVCKI
Sbjct: 18 PTMNGEIENRELRVVTPTPLGKDEPLGIMSRDEALAKAKEMGGLDLILVNNNSDPPVCKI 77
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+D+ K +YQ E K K+ K K + KEV+ S KI+ D ++ + + + +G
Sbjct: 78 VDYSKYRYQLEKKAKEVKKNS-----KGTEIKEVKMSYKIDVHDYSVRKKSASKFLKQGN 132
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
RVKC + G++ + ++LG L+RL +E+ + ES P E + I+
Sbjct: 133 RVKCTVMFRGREVQHDNLGFDLLNRLASELEEYCMTESKPKREGRNLSLIL 183
>gi|449111338|ref|ZP_21747936.1| translation initiation factor IF-3 [Treponema denticola ATCC 33521]
gi|449113845|ref|ZP_21750328.1| translation initiation factor IF-3 [Treponema denticola ATCC 35404]
gi|448957928|gb|EMB38667.1| translation initiation factor IF-3 [Treponema denticola ATCC 35404]
gi|448958618|gb|EMB39347.1| translation initiation factor IF-3 [Treponema denticola ATCC 33521]
Length = 194
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 11/180 (6%)
Query: 62 FFAAPV-QAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCD 118
++ AP+ + + + E G R+ND+I + VRL+ G + +V EA+ +A D
Sbjct: 6 YYIAPIGKGAEGESLAEVKGLRINDQIRVREVRLIGVNGEQAGIVPTIEAVKMAAEAGLD 65
Query: 119 LVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDL 178
LVEV A PPVCKI+D+ K ++Q E K +D K + K+ +E+R KI DL
Sbjct: 66 LVEVAPTAKPPVCKIIDYGKYRFQMEKKLRDSKKNQ-----KQQMMREIRMQPKIHDHDL 120
Query: 179 QMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLI--EDISVVESGPHVE 235
+ K+ +K+ +D G +VK G+K +LG L+++++ + E+ +E P +E
Sbjct: 121 EFKSSHIKKFLDGGDKVKVTVRFWGRKLAHTELGYEVLNKVLEKLGGEEACTLEKKPAME 180
>gi|376295883|ref|YP_005167113.1| translation initiation factor IF-3 [Desulfovibrio desulfuricans
ND132]
gi|323458444|gb|EGB14309.1| translation initiation factor IF-3 [Desulfovibrio desulfuricans
ND132]
Length = 182
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 8/167 (4%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPP 129
++D+K R N++I VR+V D+G + V++ +AL AR DLVEV A+PP
Sbjct: 8 RRDQKREDLVRRNERIRIPKVRVVDDDGEQLGVMATRDALDRAREKGLDLVEVAPNADPP 67
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VCKIMD+ K KYQ++ K ++ K ++ I + KEV+F K ++ D Q K + + +
Sbjct: 68 VCKIMDYGKFKYQQQKKLQEAKKKQTVIKI-----KEVKFRPKTDEHDYQTKLKNIVKFL 122
Query: 190 DKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G R K G++ +D G L R++ +D++ VES P E
Sbjct: 123 EGGDRCKVTIFFRGREIVHKDRGLAVLERVVVDTQDLAKVESKPMAE 169
>gi|222056446|ref|YP_002538808.1| translation initiation factor IF-3 [Geobacter daltonii FRC-32]
gi|221565735|gb|ACM21707.1| translation initiation factor IF-3 [Geobacter daltonii FRC-32]
Length = 154
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 6/138 (4%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
EALALA S Q DLVEV A PPVC+IMD+ K KYQ+ K ++ K + + L KE
Sbjct: 15 EALALAESQQLDLVEVSPTAVPPVCRIMDYGKFKYQQSKKLQEAKKKQVQVQL-----KE 69
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDI 225
V+ K ++ DLQ K V+R +++G + K + G++ ++LG L ++DI
Sbjct: 70 VKLRPKTDEHDLQFKIKHVRRFLEEGNKAKITVVFRGREITHQELGMSALDNFASELQDI 129
Query: 226 SVVESGPHVERKQAYAII 243
+VE +E + + I+
Sbjct: 130 GIVEVKQKMEGRSMFIIV 147
>gi|119945878|ref|YP_943558.1| translation initiation factor IF-3 [Psychromonas ingrahamii 37]
gi|119864482|gb|ABM03959.1| bacterial translation initiation factor 3 (bIF-3) [Psychromonas
ingrahamii 37]
Length = 182
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
RLND+I VRL EG VVS EAL +A DLVE+ A PPVC+IM++ K
Sbjct: 17 RLNDEITGTEVRLSDSEGKPVGVVSLEEALNMAVESDLDLVEISPNAEPPVCRIMNYGKF 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+K K++ K + + L KE++F + D Q+K + R +++G + K
Sbjct: 77 LYEKTKSVKEQRKNQKQVQL-----KEIKFRPGTDIGDYQVKLRNLTRFLEEGNKAKVTL 131
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L+R+ + +ISVVES P +E +Q ++
Sbjct: 132 RYRGREMAHQSLGIDLLNRIKADLAEISVVESFPKMEGRQMVMVL 176
>gi|407477870|ref|YP_006791747.1| translation initiation factor IF-3 [Exiguobacterium antarcticum B7]
gi|407061949|gb|AFS71139.1| Translation initiation factor IF-3 [Exiguobacterium antarcticum B7]
Length = 180
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + V SR EAL LA DLV V +A PPVCKIMD+ K
Sbjct: 16 INEGIRAREVRLIGADGAQLGVQSRTEALRLAEEADLDLVMVAPQATPPVCKIMDYG--K 73
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ EL++KD+ K+ K KEVR S IE+ D Q K K+ ++ G +VK
Sbjct: 74 YRFELQKKDKETRKNQ---KVVQMKEVRLSPTIEENDFQTKFRNAKKFLENGNKVKASIR 130
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++G L RL + + V+E P +E + + ++
Sbjct: 131 FRGRAITHSEIGRRVLERLATELSEFGVIEQRPKMEGRSMFLVL 174
>gi|90420462|ref|ZP_01228369.1| translation initiation factor IF-3 [Aurantimonas manganoxydans
SI85-9A1]
gi|90335190|gb|EAS48943.1| translation initiation factor IF-3 [Aurantimonas manganoxydans
SI85-9A1]
Length = 189
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ +GPR N I V+L+ +G + EALA+A DLVE+ ANPPVCKI+
Sbjct: 21 QNTGPRSNKDIRVPQVQLIDADGENRGPTATSEALAMAEEAGLDLVEIVPTANPPVCKIL 80
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KY+ + K + + + I + KE++ I++ D + K +V+R D+G +
Sbjct: 81 DLGKLKYETQKKSAEARRRQKTI-----EVKEIKMRPNIDEHDYETKMKSVRRFFDEGDK 135
Query: 195 VKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ ++LG L+R+ + +I+ VE+ P +E +Q ++
Sbjct: 136 VKVTLRFRGREMAHQELGMRLLNRVREETGEIAKVEAEPKLEGRQMMMVL 185
>gi|83590593|ref|YP_430602.1| translation initiation factor 3 [Moorella thermoacetica ATCC 39073]
gi|83573507|gb|ABC20059.1| bacterial translation initiation factor 3 (bIF-3) [Moorella
thermoacetica ATCC 39073]
Length = 154
Score = 78.6 bits (192), Expect = 8e-12, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV +G + ++ EAL +A+ DLVEV A PPVC+IMDF K KY++ +E++
Sbjct: 1 MRLVGADGQQLGIMPTREALRIAQEQGMDLVEVAPTARPPVCRIMDFGKYKYEQSKRERE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K + I + KEV+ IE+ D Q+K R + G +VK + G++
Sbjct: 61 ARKKQRIINI-----KEVKLRLNIEEHDFQVKTRNAIRFLQDGDKVKVTIMFRGREIAHA 115
Query: 210 DLGGYL-SRLIDLIEDISVVESGPHVERKQAYAII 243
DLG L R+ D + D++ +E P VE + I+
Sbjct: 116 DLGLKLCQRVADQVADLASIEKPPKVEGRNMTMIL 150
>gi|297182916|gb|ADI19065.1| translation initiation factor 3 (if-3) [uncultured delta
proteobacterium HF0070_15B21]
Length = 166
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I+ VR++ EG + ++S EAL + DLVEV KANPPVC++MDF K K
Sbjct: 1 MNDQIDVPEVRVIDGEGGQLGIMSIEEALEQSEEAGMDLVEVSPKANPPVCRMMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K+ + + I L KEV+ KIE+ D Q K R +++G +VK +
Sbjct: 61 YQQSKKQHAARQNQKTIHL-----KEVKMKPKIEEHDFQFKVRNALRFLEEGDKVKVNIM 115
Query: 201 PVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +DLG L + + I + +VE E + + I+
Sbjct: 116 FFGRMMAHKDLGLVLMEKFENAIGEAGIVEQPVRNEGRSMFMIM 159
>gi|298293871|ref|YP_003695810.1| translation initiation factor IF-3 [Starkeya novella DSM 506]
gi|296930382|gb|ADH91191.1| translation initiation factor IF-3 [Starkeya novella DSM 506]
Length = 174
Score = 78.6 bits (192), Expect = 8e-12, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E GPR+N+ I + V+L+ +G V++ EA+ +A+ DLVE+ + PPVCKI+
Sbjct: 7 EKEGPRVNEDIRIREVQLIDQDGQNLGVIATREAIVMAQDAGLDLVEIAPNSVPPVCKIL 66
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ + KYQ + K+ + A+ K + + KE++ I+ D +K + R D+G +
Sbjct: 67 DYGRFKYQNQ-KKANEARKKQHVV----EIKEIKLRPGIDTHDYDVKMKAIHRFFDEGDK 121
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ ++LG L+++ + + I+ VES P +E +Q ++
Sbjct: 122 VKVTLRFRGREMAHQELGYKLLNKVKEELATIAKVESEPSLEGRQMTMVL 171
>gi|94985609|ref|YP_604973.1| translation initiation factor IF-3 [Deinococcus geothermalis DSM
11300]
gi|122986589|sp|Q1IY80.1|IF3_DEIGD RecName: Full=Translation initiation factor IF-3
gi|94555890|gb|ABF45804.1| translation initiation factor IF-3 [Deinococcus geothermalis DSM
11300]
Length = 204
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 89/155 (57%), Gaps = 10/155 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + +RL+ EG ++ + +ALA+AR DLV V +A PPVC+++D+ +
Sbjct: 9 KVNEQIRVRQIRLIGAEGEQIGIIDTRDALAMAREKGLDLVMVSPQAVPPVCRLLDYGRF 68
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ EK+ R +A++ + K ++F KI+ D K V+R +++G++VK
Sbjct: 69 RYEQQQNEKENRKRARAQ------EVKAIKFRVKIDDHDFNTKTGHVRRFLEEGHKVKVT 122
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + + DI E P
Sbjct: 123 IMFRGRERTHPELGERILHRVAETLADIGAPEGMP 157
>gi|383781355|ref|YP_005465922.1| putative translation initiation factor IF-3 [Actinoplanes
missouriensis 431]
gi|381374588|dbj|BAL91406.1| putative translation initiation factor IF-3 [Actinoplanes
missouriensis 431]
Length = 203
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG +V V AL LA + DLVEV A PPVCK+MDF K K
Sbjct: 1 MNEQIRAREVRLVGPEGEQVGIVPLERALQLAADVDLDLVEVAPMARPPVCKLMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ LK ++ + + + KE++ KI+ D + K V R + G +VK +
Sbjct: 61 YESALKAREARRNQQQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
G+++ +LG L RL + I ++ VE+ P
Sbjct: 116 FRGREQSRPELGFRLLRRLSEEISELGFVEASP 148
>gi|427391903|ref|ZP_18886127.1| translation initiation factor IF-3 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425731870|gb|EKU94683.1| translation initiation factor IF-3 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 251
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+ND+I VRLV G +V V +AL +A DLVEV +NPPV K+MD+ K
Sbjct: 42 PRVNDRIRVPKVRLVGPGGEQVGVVKTEDALRVAVEANLDLVEVAPNSNPPVAKLMDYGK 101
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY+ KE+ + +S+ L K +R KI+Q D K +R ++ G +VK
Sbjct: 102 YKYESAQKERAARRNRSNAQL-----KSIRIGMKIDQNDYNTKKSQAERFLNGGDKVKFD 156
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G+++ LG L+ L + + ++S VES P E
Sbjct: 157 LRFRGREQSRPQLGVELLNGLAEDLAEVSTVESAPRAE 194
>gi|417931360|ref|ZP_12574728.1| translation initiation factor IF-3 [Propionibacterium acnes
SK182B-JCVI]
gi|340776099|gb|EGR98149.1| translation initiation factor IF-3 [Propionibacterium acnes
SK182B-JCVI]
Length = 238
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+N++I VRLV G +V V +AL LAR DLVEV +A PPV K+MD
Sbjct: 11 STEPRINERIRVPEVRLVGPNGEQVGIVRVEQALQLAREQDLDLVEVAPQARPPVVKLMD 70
Query: 136 FHKEKYQ--KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+ K KY+ ++ +E R +A S I KE++ KI+ D + K V R + G
Sbjct: 71 YGKFKYEAAQKARESRRNQANSII-------KEMKLRPKIDDHDYETKKGHVLRFLKAGD 123
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK + G+++ +LG L RL D + + + VES P E + I+
Sbjct: 124 KVKITIMFRGREQSRPELGVNLLRRLADDLTEYATVESPPKQEGRNMLMIL 174
>gi|256394619|ref|YP_003116183.1| translation initiation factor IF-3 [Catenulispora acidiphila DSM
44928]
gi|256360845|gb|ACU74342.1| translation initiation factor IF-3 [Catenulispora acidiphila DSM
44928]
Length = 250
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V VS +AL LA+ DLVEV A PPV K+MD
Sbjct: 2 STEPRINDRIRVPEVRLVGPNGEQVGIVSIQDALRLAQEQDLDLVEVAATARPPVVKVMD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ LK ++ K ++ + KE++ KI+ D + K V R + G +V
Sbjct: 62 YGKYKYESALKAREARKNQAHTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKV 116
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG LS+L + + ++ VE P + + ++ GP KK
Sbjct: 117 KITIMFRGREQSRPELGRRLLSKLAEDVAELGFVEFAPKQDGRNMIMVL-----GPHKK 170
>gi|166154177|ref|YP_001654295.1| translation initiation factor IF-3 [Chlamydia trachomatis 434/Bu]
gi|166155052|ref|YP_001653307.1| translation initiation factor IF-3 [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335422|ref|ZP_07223666.1| translation initiation factor IF-3 [Chlamydia trachomatis L2tet1]
gi|339625592|ref|YP_004717071.1| translation initiation factor IF-3 [Chlamydia trachomatis L2c]
gi|165930165|emb|CAP03649.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis 434/Bu]
gi|165931040|emb|CAP06603.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|339460495|gb|AEJ76998.1| translation initiation factor IF-3 [Chlamydia trachomatis L2c]
gi|440526651|emb|CCP52135.1| translation initiation factor IF-3 [Chlamydia trachomatis
L2b/8200/07]
gi|440536475|emb|CCP61988.1| translation initiation factor IF-3 [Chlamydia trachomatis L2b/795]
gi|440537368|emb|CCP62882.1| translation initiation factor IF-3 [Chlamydia trachomatis
L1/440/LN]
gi|440538257|emb|CCP63771.1| translation initiation factor IF-3 [Chlamydia trachomatis
L1/1322/p2]
gi|440539147|emb|CCP64661.1| translation initiation factor IF-3 [Chlamydia trachomatis L1/115]
gi|440540037|emb|CCP65551.1| translation initiation factor IF-3 [Chlamydia trachomatis L1/224]
gi|440540927|emb|CCP66441.1| translation initiation factor IF-3 [Chlamydia trachomatis
L2/25667R]
gi|440541815|emb|CCP67329.1| translation initiation factor IF-3 [Chlamydia trachomatis
L3/404/LN]
gi|440542704|emb|CCP68218.1| translation initiation factor IF-3 [Chlamydia trachomatis
L2b/UCH-2]
gi|440543595|emb|CCP69109.1| translation initiation factor IF-3 [Chlamydia trachomatis
L2b/Canada2]
gi|440544486|emb|CCP70000.1| translation initiation factor IF-3 [Chlamydia trachomatis L2b/LST]
gi|440545376|emb|CCP70890.1| translation initiation factor IF-3 [Chlamydia trachomatis L2b/Ams1]
gi|440546266|emb|CCP71780.1| translation initiation factor IF-3 [Chlamydia trachomatis
L2b/CV204]
gi|440914528|emb|CCP90945.1| translation initiation factor IF-3 [Chlamydia trachomatis L2b/Ams2]
gi|440915418|emb|CCP91835.1| translation initiation factor IF-3 [Chlamydia trachomatis L2b/Ams3]
gi|440916310|emb|CCP92727.1| translation initiation factor IF-3 [Chlamydia trachomatis
L2b/Canada1]
gi|440917203|emb|CCP93620.1| translation initiation factor IF-3 [Chlamydia trachomatis L2b/Ams4]
gi|440918094|emb|CCP94511.1| translation initiation factor IF-3 [Chlamydia trachomatis L2b/Ams5]
Length = 186
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PPVCKIMD+ K
Sbjct: 6 RINRQIRAPRVRVIGSAGEQLGILSIKEALDLAKEADLDLVEVASNSEPPVCKIMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 66 RYDITKKEKDSKKAQHQVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 121 MFRGRELAYPEHGHKVVQRMCQGLEDIGFVESEPKLNGRSLICVI 165
>gi|409990990|ref|ZP_11274294.1| translation initiation factor IF-3 [Arthrospira platensis str.
Paraca]
gi|291570597|dbj|BAI92869.1| translation initiation factor IF-3 [Arthrospira platensis NIES-39]
gi|409938151|gb|EKN79511.1| translation initiation factor IF-3 [Arthrospira platensis str.
Paraca]
Length = 181
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++ND I +RL+ EG + +++ EA+ LA+ + DLV V KA+PPVC+IMD+ K
Sbjct: 13 PQINDNIRFPKIRLIDTEGGQLGIMTPREAMKLAQEKELDLVLVSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY++E K ++ K + D KEV+ KI+ D Q++ + KR + G +VK
Sbjct: 73 FKYEQEKKVREARKKQHT-----ADVKEVKMRYKIDDHDYQVRVNQAKRFLKSGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + +L L R+ + +E+ + V+ P E + ++
Sbjct: 128 IMFRGREIQHSNLARELLKRMAEDLEEHAEVQQSPKQEGRSMMMLL 173
>gi|268678724|ref|YP_003303155.1| translation initiation factor IF-3 [Sulfurospirillum deleyianum DSM
6946]
gi|268616755|gb|ACZ11120.1| translation initiation factor IF-3 [Sulfurospirillum deleyianum DSM
6946]
Length = 171
Score = 78.6 bits (192), Expect = 8e-12, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++I A VR + D+G + +++R+EALA A L DLV + A PPVCKIM++ K K
Sbjct: 9 LNEEIRAAEVRCIGDDGTQYGIITRNEALAKADELGLDLVLIAPDAKPPVCKIMNYGKFK 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K K+ K + I + KE++ S KI D+ K + +++G V+
Sbjct: 69 YQQEKKLKEARKNQKII-----EVKEIKLSVKIASNDINYKIKHAREFLEEGKHVRFRVF 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ + G L L ++EDI+ E P +E
Sbjct: 124 LRGREMANPEAGEQVLESLWPMLEDIAEREKTPKLE 159
>gi|260592278|ref|ZP_05857736.1| translation initiation factor IF-3 [Prevotella veroralis F0319]
gi|260535912|gb|EEX18529.1| translation initiation factor IF-3 [Prevotella veroralis F0319]
Length = 226
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 22/195 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I + VR+V D G +V+ +AL LA+ DLVE+ A PPVC+
Sbjct: 2 KNDKMKMKYRVNEQIRVREVRVVSDNGAEVMPTRKALELAQKEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K + KE+RF + ++ D + K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQV----------KQEVKEIRFGPQTDEHDYKFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++ G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLNAGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKK 258
K G +KK K+
Sbjct: 169 APKKAGVAKKSQQKR 183
>gi|242278820|ref|YP_002990949.1| translation initiation factor IF-3 [Desulfovibrio salexigens DSM
2638]
gi|242121714|gb|ACS79410.1| translation initiation factor IF-3 [Desulfovibrio salexigens DSM
2638]
Length = 154
Score = 78.6 bits (192), Expect = 9e-12, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 8/154 (5%)
Query: 97 DEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAK 154
+EG+++ + EAL +A+ DLVEV KANPPVCKIMD+ K KYQ++ ++++ K +
Sbjct: 5 EEGNQLGELPTREALEIAQDRGLDLVEVAEKANPPVCKIMDYGKFKYQQQKRKQEAKKKQ 64
Query: 155 SDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-G 213
+ I + KEV+F K ++ D Q K ++R ++ G R K G++ +D G
Sbjct: 65 TVIQI-----KEVKFRPKTDEHDYQTKLKHIRRFLEGGDRCKVTIFFRGREIVHKDRGLA 119
Query: 214 YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
L R+ + +DIS +E P E + ++ +K
Sbjct: 120 VLERVKEETQDISKMEQAPRSEGRTMNMMLAPIK 153
>gi|86741868|ref|YP_482268.1| translation initiation factor IF-3 [Frankia sp. CcI3]
gi|86568730|gb|ABD12539.1| bacterial translation initiation factor 3 (bIF-3) [Frankia sp.
CcI3]
Length = 205
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV EG ++ VS EA+ +A+ + DLVEV A PPVCK+MD+ K
Sbjct: 28 RINDRIRVPEVRLVGAEGEQIGIVSIGEAMRMAQEVDLDLVEVAPTARPPVCKLMDYGKF 87
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ + K ++ K + + KE++ KI+ D + K V R + G +VK
Sbjct: 88 KYESDQKRREARKNQVQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLRAGDKVKITI 142
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL + D+ VE+ P
Sbjct: 143 MFRGREQSRPELGIRLLQRLSADVADLGYVEAQP 176
>gi|328949634|ref|YP_004366969.1| translation initiation factor IF-3 [Marinithermus hydrothermalis
DSM 14884]
gi|328449958|gb|AEB10859.1| Translation initiation factor IF-3 [Marinithermus hydrothermalis
DSM 14884]
Length = 178
Score = 78.2 bits (191), Expect = 9e-12, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 12/156 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VRL+ + G + ++ EALA+AR DLV V A+PPV +++D+ K
Sbjct: 11 RVNEEIRVRQVRLIDENGEQLGILDTREALAIARERDLDLVLVGPNASPPVARLLDYGKW 70
Query: 140 KY--QKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
+Y Q+ LKE R KA K+ + K ++F KI + D Q K V+R + +G++VK
Sbjct: 71 RYEQQQALKEA-RKKA------KRQEMKAIKFRVKINEHDYQTKLGHVRRFLQQGHKVKV 123
Query: 198 MALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + ++D++ VE P
Sbjct: 124 TIMFRGREMAHPELGKRILDRVAEDLKDLATVEMKP 159
>gi|15807081|ref|NP_295810.1| translation initiation factor IF-3 [Deinococcus radiodurans R1]
gi|14194841|sp|Q9RSN7.1|IF3_DEIRA RecName: Full=Translation initiation factor IF-3
gi|6459878|gb|AAF11633.1|AE002044_6 initiation factor 3 [Deinococcus radiodurans R1]
Length = 212
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 89/155 (57%), Gaps = 10/155 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + VRL+ EG ++ + EA+ +AR DLV V +A PPVC+++D+ +
Sbjct: 9 KVNEQIRVRQVRLIGAEGEQIGIIDTREAMNMAREKSLDLVMVSPQAVPPVCRLLDYGRF 68
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ EK+ R +A+S + K ++F KI+ D + K V+R +++G++VK
Sbjct: 69 RYEQQQNEKENRKRARSQ------EVKAIKFRVKIDDNDFKTKTGHVRRFLNEGHKVKVT 122
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + + D+ E P
Sbjct: 123 IMFRGRERTHPELGERILVRVAETLADVGAPEGNP 157
>gi|237785422|ref|YP_002906127.1| translation initiation factor IF-3 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758334|gb|ACR17584.1| translation initiation factor IF-3 [Corynebacterium kroppenstedtii
DSM 44385]
Length = 183
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 13/179 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +A LA DLVEV +A PPV KIMD+ K
Sbjct: 15 RINERIRVPEVRLVGPSGEQVGIVRTDDARKLAYDADLDLVEVAPRAKPPVAKIMDYGKY 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K ++ + + + KE +F KI+ D + K V R ++KG +VK
Sbjct: 75 KYEQAQKARESRRNQQQTVV-----KEQKFRPKIDDHDYETKKGNVVRFLEKGSKVKVTI 129
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLK 257
+ G+++ +LG L RL D + D VVES P + + ++ GP ++ G K
Sbjct: 130 MFRGREQSRPELGFRLLERLADDVADAGVVESRPKQDGRNMTMVL-----GPVRRKGKK 183
>gi|317507013|ref|ZP_07964780.1| translation initiation factor IF-3 [Segniliparus rugosus ATCC
BAA-974]
gi|316254697|gb|EFV14000.1| translation initiation factor IF-3 [Segniliparus rugosus ATCC
BAA-974]
Length = 224
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G +V V EAL LA DLVEV A PPVCKIMD+ K
Sbjct: 16 RINDRIRVPEVRLVGPGGEQVGIVRVEEALRLAIEADLDLVEVAPDARPPVCKIMDYGKF 75
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+ K ++ K + + + KE + KI+ D + K V R +D G +VK
Sbjct: 76 RYEAAQKARESRKHQQNTVI-----KEQKLRPKIDDHDYETKKGHVVRFLDSGAKVKVTI 130
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G+++ +LG L RL + + VE+ P ++ + I+
Sbjct: 131 MFRGREQSRPELGHRLLQRLGADVSEHGFVETVPRLDGRNMTMIL 175
>gi|312143808|ref|YP_003995254.1| translation initiation factor IF-3 [Halanaerobium hydrogeniformans]
gi|311904459|gb|ADQ14900.1| translation initiation factor IF-3 [Halanaerobium hydrogeniformans]
Length = 189
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I A+ VRL+ EG+++ SR EAL A DLVEV +ANPPVC+IMD+ K
Sbjct: 24 RVNDRIRAKKVRLIDPEGNQIGIKSRDEALDSAAEQGLDLVEVAPQANPPVCRIMDYGKY 83
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ KEK+ K ++ + + KEV+ KIE D +K +R ++ +VK
Sbjct: 84 KYEQAKKEKEAKKNQNVMNV-----KEVQMGVKIEDHDFNVKLKQARRFLNNKDKVKVRI 138
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ ++LG + RLI+ +DI VES P +E
Sbjct: 139 RFRGREMMHKELGYNLMDRLIEQTDDIGKVESKPKME 175
>gi|334341013|ref|YP_004545993.1| translation initiation factor IF-3 [Desulfotomaculum ruminis DSM
2154]
gi|334092367|gb|AEG60707.1| translation initiation factor IF-3 [Desulfotomaculum ruminis DSM
2154]
Length = 156
Score = 78.2 bits (191), Expect = 9e-12, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
++ EAL LA Q DLVEV A PPVC+IMDF K KY++ +EK+ K + I +
Sbjct: 11 IMPAKEALRLAEERQLDLVEVAPMAKPPVCRIMDFGKFKYEQSKREKEAKKKQRIIQV-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KEV+ +IE D Q+KA +R + G +VK + G++ LG L RL +
Sbjct: 69 ---KEVKLRPRIEDHDYQVKAKNAERFLKDGDKVKVTIMFRGREIVHTQLGHKLLIRLAE 125
Query: 221 LIEDISVVESGPHVERKQAYAII 243
++D+ VE P +E K I+
Sbjct: 126 DLKDLCTVERQPKLEGKNMIMIL 148
>gi|163845977|ref|YP_001634021.1| translation initiation factor IF-3 [Chloroflexus aurantiacus
J-10-fl]
gi|222523703|ref|YP_002568173.1| translation initiation factor IF-3 [Chloroflexus sp. Y-400-fl]
gi|163667266|gb|ABY33632.1| translation initiation factor IF-3 [Chloroflexus aurantiacus
J-10-fl]
gi|222447582|gb|ACM51848.1| translation initiation factor IF-3 [Chloroflexus sp. Y-400-fl]
Length = 275
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VRL+ + G +V V EALA+A DLVEV A PPVC+++D+ K
Sbjct: 20 RINNRIRAREVRLIDENGTQVGIVPLREALAMAEERGFDLVEVAPNAVPPVCRLLDYGKF 79
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++ KE++ + + K+ + K++R K + D+ +KA+ +R + G +VK
Sbjct: 80 RYEQSKKEREARRNQ-----KQSELKQIRLMPKTDDHDVAVKANQARRFLLAGDKVKFNL 134
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ ++G L ++ + + DI+V+E P +E
Sbjct: 135 RFRGREMAHPEIGRQMLDQIAEQLSDIAVIEQKPLME 171
>gi|402816212|ref|ZP_10865803.1| translation initiation factor IF-3 [Paenibacillus alvei DSM 29]
gi|402506116|gb|EJW16640.1| translation initiation factor IF-3 [Paenibacillus alvei DSM 29]
Length = 232
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRLV G ++ + EAL +A DLV V +A PPVC+IMD+ K +
Sbjct: 68 INEDIRAREVRLVGPAGEQIGIKPFREALQMAYDANLDLVNVAPQAKPPVCRIMDYGKFR 127
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F IE+ D K V + + G +VKC
Sbjct: 128 YEQQKKEKEARKNQKIV-----DVKEVWFRANIEEHDFNTKLRNVLKFLRDGDKVKCSVR 182
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ D+G L R+++ ++ +VE P +E + I+
Sbjct: 183 FRGREITHADIGKKVLERVLNEATELCIVERAPKLEGRSMIMIL 226
>gi|121594740|ref|YP_986636.1| translation initiation factor 3 [Acidovorax sp. JS42]
gi|120606820|gb|ABM42560.1| bacterial translation initiation factor 3 (bIF-3) [Acidovorax sp.
JS42]
Length = 205
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 11/211 (5%)
Query: 60 VRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVL--DEGHKVVSRHEALALARSLQC 117
VR A + +++++E++ RLN +I A VRL +E +VS EAL +A L
Sbjct: 3 VRAIATEFRDRRQREERKH---RLNREIMAPEVRLSGPDNEPLGIVSLQEALRMAGELDV 59
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVE+ ANPPVC++MD+ K KYQ++ K + ++ I + KEV+F + D
Sbjct: 60 DLVEIAATANPPVCRLMDYGKFKYQEQKKAAEAKAKQTVI-----EIKEVKFRPGTDDGD 114
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVER 236
+K ++R + +G + K G++ ++LG L+RL D + D +VE P +E
Sbjct: 115 YNIKLRNIRRFLAEGDKCKITLRFRGREITHQELGLALLNRLRDDLGDTILVEQFPKLEG 174
Query: 237 KQAYAIIRHVKFGPSKKGGLKKLKAVGDTSG 267
+Q +I + P+ K + A GD +
Sbjct: 175 RQMIMMIAPARKKPAGKPAAESAPAAGDNAA 205
>gi|426403601|ref|YP_007022572.1| translation initiation factor IF-3 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860269|gb|AFY01305.1| translation initiation factor IF-3 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 198
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 95/165 (57%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I AQ +R++ DEG+ V++ EAL +A DL+E+ A PP CKIMD+ K
Sbjct: 2 RVNREIRAQQIRVIDDEGNMLGVMTVPEALRIAEDRGLDLLEIAPTATPPTCKIMDYGKW 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ + K K ++ +T+ KE++ + +Q D + K + +R + +G +VK
Sbjct: 62 KYENKKKATAARKKQTVVTI-----KEIQMRPRTDQHDFETKMNHARRFLLEGDKVKVSL 116
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+G++ ++LG + + I ++D+++VES P +E K + ++
Sbjct: 117 RFMGREMAHQELGMEVMKKCIAFVDDLALVESQPKMEGKNMFLML 161
>gi|336399663|ref|ZP_08580463.1| bacterial translation initiation factor 3 (bIF-3) [Prevotella
multisaccharivorax DSM 17128]
gi|336069399|gb|EGN58033.1| bacterial translation initiation factor 3 (bIF-3) [Prevotella
multisaccharivorax DSM 17128]
Length = 226
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
R+N +I+ + VR+V D G +V+ +AL +AR + DLVE+ A PPVC+I+D+ K Y
Sbjct: 11 RINGQIHVREVRVVSDGGSEVMPTRKALDMARQQELDLVEISPNAQPPVCRIIDYSKFLY 70
Query: 142 QKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALP 201
Q++ ++K+ + + + + KE+RF + + D Q K K +++G +V+
Sbjct: 71 QQKKRQKEMKQKQVKV-----EVKEIRFGPQTDDHDYQFKLKHAKEFLEEGNKVRAYVFF 125
Query: 202 VGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G+ +D G L R + +E+ + VE P +E K+ + + K G +K+
Sbjct: 126 RGRSILFKDQGEVLLLRFANDLEEWAKVEQMPKLEGKKMFLFLAPKKAGVAKQ 178
>gi|440784971|ref|ZP_20962008.1| translation initiation factor IF-3 [Clostridium pasteurianum DSM
525]
gi|440218621|gb|ELP57840.1| translation initiation factor IF-3 [Clostridium pasteurianum DSM
525]
Length = 169
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQ 142
LN+ I + +RL E +++ EAL +AR DLV V A PPVCKIMD+ K Y+
Sbjct: 10 LNENIKNREIRLS-GEDSRIIRTDEALKMARERDLDLVMVSPNAKPPVCKIMDYSKYLYE 68
Query: 143 KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPV 202
+ K K K + + L KEVR S IE D+ +KA+ K+ + G +VK
Sbjct: 69 QSKKLKLAKKNQKVVVL-----KEVRLSPTIEDHDINIKANNAKKFLSNGDKVKVSIRFR 123
Query: 203 GKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
G++ +G L +D I ++ +E P +E + + I+ GP K
Sbjct: 124 GRQNNNTQMGKKVLEAFVDKIGELGTIEKAPQLEGRNMFMIL-----GPKK 169
>gi|325919877|ref|ZP_08181867.1| bacterial translation initiation factor 3 (bIF-3) [Xanthomonas
gardneri ATCC 19865]
gi|325549661|gb|EGD20525.1| bacterial translation initiation factor 3 (bIF-3) [Xanthomonas
gardneri ATCC 19865]
Length = 147
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 89/144 (61%), Gaps = 8/144 (5%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 4 VLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 58
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 59 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMASRIEA 118
Query: 220 DLIEDISVVESGPHVERKQAYAII 243
DL EDI V+ES P +E +Q +I
Sbjct: 119 DLGEDI-VIESRPRLEGRQMVMMI 141
>gi|296394206|ref|YP_003659090.1| translation initiation factor IF-3 [Segniliparus rotundus DSM
44985]
gi|296181353|gb|ADG98259.1| translation initiation factor IF-3 [Segniliparus rotundus DSM
44985]
Length = 225
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G +V V EAL LA DLVEV +A PPVCKIMD+ K
Sbjct: 6 RINDRIRVPEVRLVGAGGEQVGIVRVEEALRLAVEADLDLVEVAPEARPPVCKIMDYGKF 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+ K ++ K + + + KE + KI+ D + K V R +D G +VK
Sbjct: 66 RYETAQKARESRKHQQNTVI-----KEQKLRPKIDDHDYETKKGHVVRFLDAGAKVKVTI 120
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G+++ +LG L RL + + VE+ P ++ + I+
Sbjct: 121 MFRGREQSRPELGHRLLQRLGADVSEHGFVETVPRLDGRNMTMIL 165
>gi|110680169|ref|YP_683176.1| translation initiation factor IF-3 [Roseobacter denitrificans OCh
114]
gi|109456285|gb|ABG32490.1| translation initiation factor IF-3 [Roseobacter denitrificans OCh
114]
Length = 164
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI +RL+ EG V VS A+ +A DLVE+ ANPPVCKIMDF K K
Sbjct: 1 MNEKIRGSDIRLIGAEGENVGVVSPERAMEMAMDAGLDLVEISPNANPPVCKIMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ +E + A+ K I + KEV+F + D +K V R ++ G +VK
Sbjct: 61 YEQQKRESE-ARKKQKII----EIKEVKFRPNTDTNDYDVKMRNVFRFLENGDKVKITLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + ++ VE+ P +E +Q +I
Sbjct: 116 FRGREMAHQNLGRELLERVAEDTKEAGRVENFPKMEGRQMVMLI 159
>gi|134299470|ref|YP_001112966.1| translation initiation factor IF-3 [Desulfotomaculum reducens MI-1]
gi|134052170|gb|ABO50141.1| bacterial translation initiation factor 3 (bIF-3) [Desulfotomaculum
reducens MI-1]
Length = 145
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 103 VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKG 162
+S EAL LA Q DLVEV +A PPVC+IMD+ K KY++ +EK+ K + I +
Sbjct: 1 MSTKEALRLAEEKQLDLVEVAAQAKPPVCRIMDYGKFKYEQSKREKEAKKRQRIIQV--- 57
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDL 221
KEV+ +IE D K+ +R + G +VK + G++ +LG L RL
Sbjct: 58 --KEVKLRPRIEDHDYSTKSKNAERFLKDGDKVKVTIMFRGREIVHTELGRALLERLAQD 115
Query: 222 IEDISVVESGPHVERKQAYAII 243
++DI +VE P +E K I+
Sbjct: 116 LKDICIVERHPKLEGKNMIMIL 137
>gi|229816631|ref|ZP_04446920.1| hypothetical protein COLINT_03679 [Collinsella intestinalis DSM
13280]
gi|229807759|gb|EEP43572.1| hypothetical protein COLINT_03679 [Collinsella intestinalis DSM
13280]
Length = 195
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I A VRL+ +G ++ +A +A DLVE+ A PPVCK+MD+ K
Sbjct: 18 RINDEIRAPRVRLIGVDGSQLGLFDTRDAQRIADDQNLDLVEIAPNAEPPVCKVMDYGKF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ +K K K +S + + KE++F KI+ D + K V R + KG RVK
Sbjct: 78 KYQQAMKAKQARKNQSKV-----EVKEMKFRPKIDVGDYETKKGHVLRFLKKGARVKITI 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ + G L RL + ++ + VES P +E + ++ +K
Sbjct: 133 MFRGREMAHPEQGLNVLERLAEDLKPFATVESQPKLEGRNMLMLLAPIK 181
>gi|386815090|ref|ZP_10102308.1| bacterial translation initiation factor 3 (bIF-3) [Thiothrix nivea
DSM 5205]
gi|386419666|gb|EIJ33501.1| bacterial translation initiation factor 3 (bIF-3) [Thiothrix nivea
DSM 5205]
Length = 173
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND IN +RL+ EG VVS +AL +A + DLVE+ A PPVC+IMD+ K
Sbjct: 8 RINDDINVPKIRLIDAEGENKGVVSLRDALEMAYDAELDLVEIVPNAKPPVCRIMDYGKF 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
++ ++ + A + K+ KE++ ++ D Q+K +K +D+G +VK
Sbjct: 68 RF-----DESKKAAMARKNQKQVQVKEIKMRPATDEGDYQIKMRKLKEFLDEGDKVKVTL 122
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ ++LG L R+ +E+++VVE P +E +Q ++ P KK
Sbjct: 123 RFKGREMAHKELGMDVLKRVEKELEELAVVEQFPRLEGRQMVMML-----APKKK 172
>gi|302346318|ref|YP_003814616.1| translation initiation factor IF-3 [Prevotella melaninogenica ATCC
25845]
gi|383812563|ref|ZP_09967998.1| translation initiation factor IF-3 [Prevotella sp. oral taxon 306
str. F0472]
gi|302150892|gb|ADK97153.1| translation initiation factor IF-3 [Prevotella melaninogenica ATCC
25845]
gi|383354764|gb|EID32313.1| translation initiation factor IF-3 [Prevotella sp. oral taxon 306
str. F0472]
Length = 226
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 104/195 (53%), Gaps = 22/195 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I + VR+V D+G +V+ +AL LA+ DLVE+ A PPVC+
Sbjct: 2 KNDKMKMKYRVNEQIRVREVRVVSDDGAEVMPTRKALELAQKEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K + KE+RF + ++ D + K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQV----------KQEVKEIRFGPQTDEHDYKFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++ G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLNAGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKK 258
K G +KK K+
Sbjct: 169 APKKAGVAKKSQQKR 183
>gi|383452318|ref|YP_005366307.1| translation initiation factor IF-3 [Corallococcus coralloides DSM
2259]
gi|380733128|gb|AFE09130.1| translation initiation factor IF-3 [Corallococcus coralloides DSM
2259]
Length = 211
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 108 ALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEV 167
AL ARS DLVEV A PPVCKIMD+ K KY+++ K D + + I L KEV
Sbjct: 6 ALEKARSESLDLVEVSPMAKPPVCKIMDYGKFKYEEKKKASDAKRTQVVIQL-----KEV 60
Query: 168 RFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDIS 226
+ K E+ D + K +R +++G + K + G++ ++LG L +I ++D++
Sbjct: 61 KLRPKTEEHDYEFKVRNTRRFIEEGNKAKVVIQFRGREITHKELGSAILDDVIKDLKDVA 120
Query: 227 VVESGPHVERKQAYAII 243
V E P +E +Q Y I+
Sbjct: 121 VAEQLPRMEGRQMYMIL 137
>gi|381170881|ref|ZP_09880033.1| translation initiation factor IF-3 [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688604|emb|CCG36520.1| translation initiation factor IF-3 [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 154
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 11 VLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 65
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 66 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEA 125
Query: 220 DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
DL +DI V+ES P +E +Q +I P KK
Sbjct: 126 DLGDDI-VIESRPRLEGRQMVMMI-----APKKK 153
>gi|313680891|ref|YP_004058630.1| bacterial translation initiation factor 3 (bif-3) [Oceanithermus
profundus DSM 14977]
gi|313153606|gb|ADR37457.1| bacterial translation initiation factor 3 (bIF-3) [Oceanithermus
profundus DSM 14977]
Length = 205
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VR++ + G + ++ +AL LA+ DLV V A+PPV K++D+ K
Sbjct: 16 RINEQIRVRQVRVIDESGEQLGIMETRQALDLAKQKDLDLVLVGPTASPPVAKLLDYGKW 75
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ EK+ A+ K+ K+ + K ++F KI++ D Q K V+R ++ G++VK
Sbjct: 76 RYEQQQAEKE-ARKKA----KRQEMKSIKFRVKIDEHDYQTKLGHVRRFLEAGHKVKVTI 130
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + + +I+VVE P
Sbjct: 131 MFRGREMAHPELGKKILDRVAEDLSEIAVVEMKP 164
>gi|21243324|ref|NP_642906.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
citri str. 306]
gi|78048350|ref|YP_364525.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|346725462|ref|YP_004852131.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
citrumelo F1]
gi|418517095|ref|ZP_13083262.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418520472|ref|ZP_13086521.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|21108866|gb|AAM37442.1| initiation factor IF-3 [Xanthomonas axonopodis pv. citri str. 306]
gi|78036780|emb|CAJ24473.1| Initiation factor IF-3 [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|346650209|gb|AEO42833.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
citrumelo F1]
gi|410703853|gb|EKQ62341.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410706152|gb|EKQ64615.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 159
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 98/166 (59%), Gaps = 15/166 (9%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VR++ +G V +SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ +
Sbjct: 4 VRVIGSDGEMVGVLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKAN 62
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK G++ +
Sbjct: 63 EAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQ 118
Query: 210 DLGGYLSRLI--DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG ++ I DL +DI V+ES P +E +Q +I P KK
Sbjct: 119 ELGREMAARIEADLGDDI-VIESRPRLEGRQMVMMI-----APKKK 158
>gi|15676619|ref|NP_273763.1| translation initiation factor IF-3 [Neisseria meningitidis MC58]
gi|254493204|ref|ZP_05106375.1| translation initiation factor IF-3 [Neisseria gonorrhoeae 1291]
gi|268594344|ref|ZP_06128511.1| translation initiation factor IF-3 [Neisseria gonorrhoeae 35/02]
gi|268596340|ref|ZP_06130507.1| translation initiation factor IF-3 [Neisseria gonorrhoeae FA19]
gi|268598467|ref|ZP_06132634.1| translation initiation factor IF-3 [Neisseria gonorrhoeae MS11]
gi|268600820|ref|ZP_06134987.1| translation initiation factor IF-3 [Neisseria gonorrhoeae PID18]
gi|268603125|ref|ZP_06137292.1| translation initiation factor IF-3 [Neisseria gonorrhoeae PID1]
gi|268681606|ref|ZP_06148468.1| translation initiation factor IF-3 [Neisseria gonorrhoeae PID332]
gi|268683834|ref|ZP_06150696.1| translation initiation factor IF-3 [Neisseria gonorrhoeae
SK-92-679]
gi|268686075|ref|ZP_06152937.1| translation initiation factor IF-3 [Neisseria gonorrhoeae
SK-93-1035]
gi|291044370|ref|ZP_06570079.1| translation initiation factor IF-3 [Neisseria gonorrhoeae DGI2]
gi|293399556|ref|ZP_06643709.1| translation initiation factor IF-3 [Neisseria gonorrhoeae F62]
gi|313668801|ref|YP_004049085.1| translation initiation factor IF-3 [Neisseria lactamica 020-06]
gi|385324523|ref|YP_005878962.1| translation initiation factor IF-3 [Neisseria meningitidis 8013]
gi|385851614|ref|YP_005898129.1| translation initiation factor IF-3 [Neisseria meningitidis
M04-240196]
gi|385856876|ref|YP_005903388.1| translation initiation factor IF-3 [Neisseria meningitidis
NZ-05/33]
gi|416178773|ref|ZP_11610730.1| translation initiation factor IF-3 [Neisseria meningitidis M6190]
gi|416188273|ref|ZP_11614742.1| translation initiation factor IF-3 [Neisseria meningitidis M0579]
gi|416197452|ref|ZP_11618662.1| translation initiation factor IF-3 [Neisseria meningitidis CU385]
gi|416214019|ref|ZP_11622682.1| translation initiation factor IF-3 [Neisseria meningitidis
M01-240013]
gi|418287932|ref|ZP_12900462.1| translation initiation factor IF-3 [Neisseria meningitidis NM233]
gi|418290194|ref|ZP_12902368.1| translation initiation factor IF-3 [Neisseria meningitidis NM220]
gi|7225947|gb|AAF41134.1| translation initiation factor 3 [Neisseria meningitidis MC58]
gi|226512244|gb|EEH61589.1| translation initiation factor IF-3 [Neisseria gonorrhoeae 1291]
gi|261392910|emb|CAX50491.1| translation initiation factor IF-3 [Neisseria meningitidis 8013]
gi|268547733|gb|EEZ43151.1| translation initiation factor IF-3 [Neisseria gonorrhoeae 35/02]
gi|268550128|gb|EEZ45147.1| translation initiation factor IF-3 [Neisseria gonorrhoeae FA19]
gi|268582598|gb|EEZ47274.1| translation initiation factor IF-3 [Neisseria gonorrhoeae MS11]
gi|268584951|gb|EEZ49627.1| translation initiation factor IF-3 [Neisseria gonorrhoeae PID18]
gi|268587256|gb|EEZ51932.1| translation initiation factor IF-3 [Neisseria gonorrhoeae PID1]
gi|268621890|gb|EEZ54290.1| translation initiation factor IF-3 [Neisseria gonorrhoeae PID332]
gi|268624118|gb|EEZ56518.1| translation initiation factor IF-3 [Neisseria gonorrhoeae
SK-92-679]
gi|268626359|gb|EEZ58759.1| translation initiation factor IF-3 [Neisseria gonorrhoeae
SK-93-1035]
gi|291011264|gb|EFE03260.1| translation initiation factor IF-3 [Neisseria gonorrhoeae DGI2]
gi|291610125|gb|EFF39247.1| translation initiation factor IF-3 [Neisseria gonorrhoeae F62]
gi|313006263|emb|CBN87725.1| putative translation initiation factor IF-3 [Neisseria lactamica
020-06]
gi|325131826|gb|EGC54526.1| translation initiation factor IF-3 [Neisseria meningitidis M6190]
gi|325136056|gb|EGC58666.1| translation initiation factor IF-3 [Neisseria meningitidis M0579]
gi|325140124|gb|EGC62653.1| translation initiation factor IF-3 [Neisseria meningitidis CU385]
gi|325144076|gb|EGC66384.1| translation initiation factor IF-3 [Neisseria meningitidis
M01-240013]
gi|325206437|gb|ADZ01890.1| translation initiation factor IF-3 [Neisseria meningitidis
M04-240196]
gi|325207765|gb|ADZ03217.1| translation initiation factor IF-3 [Neisseria meningitidis
NZ-05/33]
gi|372202039|gb|EHP15902.1| translation initiation factor IF-3 [Neisseria meningitidis NM220]
gi|372202868|gb|EHP16628.1| translation initiation factor IF-3 [Neisseria meningitidis NM233]
Length = 155
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K KYQ+ K++D
Sbjct: 1 MRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKYKYQQA-KKRD 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ KE++F ++ D Q+K + R + G +VK G++ +
Sbjct: 60 EAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTLRFRGREMAHQ 115
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 116 QLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 155
>gi|350571285|ref|ZP_08939615.1| translation initiation factor IF3 [Neisseria wadsworthii 9715]
gi|349792556|gb|EGZ46411.1| translation initiation factor IF3 [Neisseria wadsworthii 9715]
Length = 188
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 57 CNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARS 114
N V F + V AQ+++ R+N +I A+ VRL+ G + +VS +ALA++
Sbjct: 6 VNLVIFIRSIVIAQERE-------ARINGEITAKEVRLISGSGEQLGIVSLRDALAMSEE 58
Query: 115 LQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIE 174
DLVE+ A PPVCK+MDF K KY++ K++D AK K K+ KE++F +
Sbjct: 59 QDVDLVEISPTAKPPVCKLMDFGKYKYEQS-KKRDEAKKKQ----KQVQIKEIKFRPGTD 113
Query: 175 QKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPH 233
+ D Q+K + R ++ G +VK G++ ++ G L R+ + + +++ +E P
Sbjct: 114 EGDYQIKMRNINRFLEDGDKVKVTLRFRGREMAHQEFGAQLLERVKEDLAEVATIEQFPK 173
Query: 234 VERKQAYAII 243
+E +Q +I
Sbjct: 174 MEGRQMVMMI 183
>gi|206900270|ref|YP_002251027.1| translation initiation factor IF-3 [Dictyoglomus thermophilum
H-6-12]
gi|206739373|gb|ACI18431.1| translation initiation factor IF-3 [Dictyoglomus thermophilum
H-6-12]
Length = 168
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
++S EAL +AR DLVEV ANPPVC+IMDF K KY+ KEK+ AK I
Sbjct: 11 IMSVSEALKIAREKNLDLVEVAPNANPPVCRIMDFGKFKYELARKEKE-AKKNQKIA--- 66
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLID 220
+ KE++ IE+ D Q+K ++ ++KGY+V+ + L G++ + G L R++
Sbjct: 67 SEVKEIKIRPNIEEHDYQVKLRKIREFLEKGYKVRLIILFKGRQLIYNEWGDKLLERILQ 126
Query: 221 LIEDISVVE 229
I D+ E
Sbjct: 127 DISDLGTAE 135
>gi|340754645|ref|ZP_08691381.1| translation initiation factor IF-3 [Fusobacterium sp. D12]
gi|419841579|ref|ZP_14364945.1| translation initiation factor IF-3 [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|421500513|ref|ZP_15947513.1| translation initiation factor IF-3 [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|340573772|gb|EFS22484.2| translation initiation factor IF-3 [Fusobacterium sp. D12]
gi|386904482|gb|EIJ69272.1| translation initiation factor IF-3 [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|402268256|gb|EJU17638.1| translation initiation factor IF-3 [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 170
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+NDKI + R++ +G + V+S EAL +A DLVE+ A PPVCKIM+F K
Sbjct: 8 RINDKIRGKEFRIIGADGEQLGVMSAAEALEIAAGQDLDLVEIAANAKPPVCKIMNFGKY 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++E K K+ K + K+ KEV+ + +I+ DL K + +++ ++K +VK
Sbjct: 68 RYEQERKAKEAKKNQ-----KQTIVKEVKVTARIDVHDLDTKVNQIQKFLEKDNKVKVTL 122
Query: 200 LPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ G+++ LG + L ++ E S + V++K A +H+ P KK
Sbjct: 123 VLFGREKMHASLG--VGTLDEIAEKFS---ANADVDKKYAEK-QKHIILTPKKK 170
>gi|187477892|ref|YP_785916.1| translation initiation factor IF-3, partial [Bordetella avium 197N]
gi|115422478|emb|CAJ49003.1| translation initiation factor IF-3 [Bordetella avium 197N]
Length = 165
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 94/175 (53%), Gaps = 13/175 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRL+ EG + +V +A L+ DLVE+ A+PPVC++MDF K KYQ E K +
Sbjct: 1 VRLIGLEGEQLGIVKITDAFRLSEQADVDLVEIAPNADPPVCRLMDFGKFKYQ-EQKRQA 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
A++K + KEV+F ++ D Q+K ++R +++G + K G++ +
Sbjct: 60 EARSKQKVI----QVKEVKFRPATDEGDYQVKLRNLRRFLEEGDKAKVTLRFRGREMAHQ 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKAVG 263
+LG L R+ D + +++ VE+ P +E +Q ++ P KK + K +VG
Sbjct: 116 ELGMRVLERVRDDLTELAQVEAMPKLEGRQMVMVL-----APKKKAAVTKTDSVG 165
>gi|158426068|ref|YP_001527360.1| translation initiation factor IF-3 [Azorhizobium caulinodans ORS
571]
gi|172047848|sp|A8HWL0.1|IF3_AZOC5 RecName: Full=Translation initiation factor IF-3
gi|158332957|dbj|BAF90442.1| translation initiation factor 3 [Azorhizobium caulinodans ORS 571]
Length = 174
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E GPR+N++I + V+L+ +G V+ +AL LA+ DLVE+ ++PPVCKI+
Sbjct: 7 EKDGPRVNEEIRIREVQLIDQDGQNRGVLPTRDALLLAQEAGLDLVEISPNSSPPVCKIL 66
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
DF + KYQ + K+ A+ K + + KE++ I+ D +K + R ++G +
Sbjct: 67 DFGRFKYQNQ-KKASEARKKQKVV----EVKEIKLRPGIDTHDYDVKMKAMLRFFEEGDK 121
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +D+G L +L + + +I+ VE+ P +E +Q I+
Sbjct: 122 VKVTLRFRGREMAHQDIGYKLLQKLKEDVTNIAKVEAEPMLEGRQMIMIL 171
>gi|297626570|ref|YP_003688333.1| translation initiation factor IF-3 [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296922335|emb|CBL56907.1| Translation initiation factor IF-3 [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 237
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G ++ V +AL LAR DLVEV A PPVCK+MD+ K
Sbjct: 14 RINERIRVPEVRLVGPNGEQIGIVRLEQALQLAREHDLDLVEVAPGARPPVCKLMDYGKF 73
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ + +S+ + KE++ KI+ D + K V R + G +VK
Sbjct: 74 KYENAQKARESRRNQSNTVI-----KEMKLRPKIDGHDYETKKGHVVRFLRGGDKVKITI 128
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G+++ +LG L RL + + D VVE P E + + ++
Sbjct: 129 MFRGREQSRPELGFNLLRRLAEDVSDDGVVEQSPKQEGRNMHMVL 173
>gi|283782962|ref|YP_003373716.1| translation initiation factor IF-3 [Gardnerella vaginalis 409-05]
gi|283441312|gb|ADB13778.1| translation initiation factor IF-3 [Gardnerella vaginalis 409-05]
Length = 253
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I VRL+ +G +V ++ AL LAR DLVEV A PPV K++D+ K
Sbjct: 28 PRINEEIRVPQVRLIGPKGEQVGVIATSVALNLAREANLDLVEVAPTAKPPVAKLIDYGK 87
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ A+ + T+ + KE+RF KI+ D +K V R ++ G +VK
Sbjct: 88 YKYNEKIKARE---ARRNQTV--AEVKEIRFRLKIDDHDFDVKKGHVLRFLNGGDKVKVT 142
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL D + + VE P E
Sbjct: 143 IMLRG-REQSRPVGGVELLRRLADEVSESGTVEFAPKQE 180
>gi|390944269|ref|YP_006408030.1| translation initiation factor 3 (bIF-3) [Belliella baltica DSM
15883]
gi|390417697|gb|AFL85275.1| bacterial translation initiation factor 3 (bIF-3) [Belliella
baltica DSM 15883]
Length = 183
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 15/169 (8%)
Query: 82 RLNDKINAQFVRLV---LDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
++NDKI A+ VR+V ++ G+ V+S EA+ LA + + DLVE+ A+PPVCKI+D+ K
Sbjct: 16 KINDKIRAREVRIVGDFVEGGNAVLSLSEAIKLAEANELDLVEISPTASPPVCKIIDYAK 75
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY++ K+K+ KA + T+ KE+RF + D K + +G +VK
Sbjct: 76 FKYEQRKKQKE-IKANAAKTV----LKEIRFGPNTDDHDFNFKLKHAINFLKEGSKVKAY 130
Query: 199 ALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VG+ KE E L L + +E+ VE P +E K+ + +
Sbjct: 131 VHFVGRTIVFKERGEML---LLKFAQALEEYGAVEQMPKMEGKRMFLFL 176
>gi|340750032|ref|ZP_08686879.1| translation initiation factor IF-3 [Fusobacterium mortiferum ATCC
9817]
gi|229419676|gb|EEO34723.1| translation initiation factor IF-3 [Fusobacterium mortiferum ATCC
9817]
Length = 172
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 23/182 (12%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N+KI + R++ G + V+S + AL LAR DLVE+ A PPVCKIMD
Sbjct: 7 TDKIRINEKIKGKEFRIISSSGEQLGVMSANAALELARQEGLDLVEIAATAKPPVCKIMD 66
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K +Y++ K K+ K + K+ KEV+ + +I+ DL+ K +K+ ++K +V
Sbjct: 67 FGKYRYEQTRKAKEAKKNQ-----KQTVVKEVKVTARIDSHDLETKMSQIKKFLEKENKV 121
Query: 196 KCMALPVGKKEETEDLGGYLSRLIDLIEDIS-----VVESGPHVERKQAYAIIRHVKFGP 250
K + G+++ LG +D +++I+ + E+ KQ +H+ P
Sbjct: 122 KVTLVLFGREKMHATLG------VDTLDEIAEKFAEIAEADKKYNDKQ-----KHIILSP 170
Query: 251 SK 252
K
Sbjct: 171 KK 172
>gi|395008202|ref|ZP_10391887.1| translation initiation factor IF-3 [Acidovorax sp. CF316]
gi|394313837|gb|EJE50802.1| translation initiation factor IF-3 [Acidovorax sp. CF316]
Length = 178
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS EAL +A L DLVE+ ANPPVC++MD+ K KYQ E K AKAK +
Sbjct: 17 VVSLMEALRMAGELDVDLVEIAATANPPVCRLMDYGKFKYQ-EQKRAAEAKAKQTVI--- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KEV+F + D +K ++R + +G + K G++ ++LG L+R+ D
Sbjct: 73 -EIKEVKFRPGTDDGDYNIKMRNIRRFLAEGDKCKITLRFRGREITHQELGLALLNRIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ D ++E P +E +Q +I
Sbjct: 132 ELADTIIIEQFPKLEGRQMIMMI 154
>gi|289661761|ref|ZP_06483342.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289668712|ref|ZP_06489787.1| translation initiation factor IF-3 [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 159
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 98/166 (59%), Gaps = 15/166 (9%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VR++ +G V +SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ +
Sbjct: 4 VRVIGSDGEMVGVLSRDEALAKADEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKAN 62
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK G++ +
Sbjct: 63 EAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQ 118
Query: 210 DLGGYLSRLI--DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG ++ I DL +DI V+ES P +E +Q +I P KK
Sbjct: 119 ELGREMAARIEADLGDDI-VIESRPRLEGRQMVMMI-----APKKK 158
>gi|152976958|ref|YP_001376475.1| translation initiation factor IF-3 [Bacillus cytotoxicus NVH
391-98]
gi|152025710|gb|ABS23480.1| translation initiation factor IF-3 [Bacillus cytotoxicus NVH
391-98]
Length = 195
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL +A +L DLV V A PPVC+IMD+ K +
Sbjct: 31 INEQIRAREVRLVGANGDQLGIKSRNDALDMAANLNLDLVLVAPNAKPPVCRIMDYGKFR 90
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + + KG +VK
Sbjct: 91 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNALKFLGKGDKVKASIR 145
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++ +ES P +E + + I+
Sbjct: 146 FKGRAITHKEIGQRVLDRFAEACAEVGTIESKPKMEGRSMFLIL 189
>gi|298369383|ref|ZP_06980701.1| translation initiation factor IF-3 [Neisseria sp. oral taxon 014
str. F0314]
gi|298283386|gb|EFI24873.1| translation initiation factor IF-3 [Neisseria sp. oral taxon 014
str. F0314]
Length = 155
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K KYQ+ K++D
Sbjct: 1 MRLISESGEQLGVVSVREALAMAEEQDVDLVEISPTAKPPVCKLMDYGKYKYQQA-KKRD 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ KE++F ++ D Q+K + R + G +VK G++ +
Sbjct: 60 EAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTLRFRGREMAHQ 115
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 116 QLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 155
>gi|300856609|ref|YP_003781593.1| translation initiation factor IF-3 [Clostridium ljungdahlii DSM
13528]
gi|300436724|gb|ADK16491.1| predicted translation initiation factor IF-3 [Clostridium
ljungdahlii DSM 13528]
Length = 173
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 14/159 (8%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I + VR++ D+G + ++ EAL LA + DLV + A PPVCKIM++ K
Sbjct: 10 INQDIVEKEVRVISDDGSQMGIILSKEALRLAEEKELDLVMISPNAKPPVCKIMNYGKFM 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + + + KEVRFS KIE+ D+ +KA ++ + G +VK
Sbjct: 70 YEQVKKDKEARKKQKVVNI-----KEVRFSPKIEEHDISIKAKNARKFLLAGDKVKVTVR 124
Query: 201 PVGKKEETEDLGGYLSRLIDL----IEDISVVESGPHVE 235
G++ + +G +++D+ ++D+ V+E P +E
Sbjct: 125 FRGREADYSFIG---KKILDIFHSKLQDVCVIERQPKLE 160
>gi|292670653|ref|ZP_06604079.1| translation initiation factor IF3 [Selenomonas noxia ATCC 43541]
gi|422344055|ref|ZP_16424982.1| translation initiation factor IF-3 [Selenomonas noxia F0398]
gi|292647680|gb|EFF65652.1| translation initiation factor IF3 [Selenomonas noxia ATCC 43541]
gi|355377803|gb|EHG25012.1| translation initiation factor IF-3 [Selenomonas noxia F0398]
Length = 188
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+ + VR+ EG + ++ +AL +A DLVEV A PPVC+IMDF K
Sbjct: 2 RINEEIHIREVRVTSAEGEQLGIMLTRDALRMAEEQHLDLVEVAPNAKPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 62 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 116
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ D + D+ VE G +E K I+
Sbjct: 117 MFRGRELSHPELGRVVLDRVSDRLGDLVTVERGAKLEGKNMTMIL 161
>gi|311115050|ref|YP_003986271.1| translation initiation factor IF3 [Gardnerella vaginalis ATCC
14019]
gi|310946544|gb|ADP39248.1| translation initiation factor IF3 [Gardnerella vaginalis ATCC
14019]
Length = 244
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I VRL+ +G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 18 PRINEEIRVSQVRLIGPKGEQVGVIATSVALNLAKEANLDLVEVAPTAKPPVAKLIDYGK 77
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D +K V R ++ G +VK
Sbjct: 78 YKYNEKIKAREARRNQS-----TAEIKEIRFRLKIDDHDFDVKKGHVLRFLNGGDKVKVT 132
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL D + + +E P E
Sbjct: 133 IMLRG-REQSRPIGGVELLRRLADEVSESGTIEFAPKQE 170
>gi|226224388|ref|YP_002758495.1| translation initiation factor IF-3 [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|225876850|emb|CAS05559.1| translation initiation factor IF-3 [Listeria monocytogenes serotype
4b str. CLIP 80459]
Length = 178
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ +G + V S+ +AL +A DLV V A PPV +IMD+ K +
Sbjct: 14 VNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFR 73
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+K+ K + I + KEVR S I++ D K ++ ++KG +VKC
Sbjct: 74 FEQQKKDKEARKNQKVIVM-----KEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIR 128
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R ED+ +E P ++ + + ++
Sbjct: 129 FKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFLVL 172
>gi|392948613|ref|ZP_10314220.1| Translation initiation factor 3 [Lactobacillus pentosus KCA1]
gi|392436175|gb|EIW14092.1| Translation initiation factor 3 [Lactobacillus pentosus KCA1]
Length = 166
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ +G + V SR EA+ +A DLV V KA PPV +IMD+ K +
Sbjct: 2 VNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KE++ K + +++ KEVR S I+ D K ++ + KG +V+
Sbjct: 62 FEQQKKEREARKKQKVVSI-----KEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L+R+I+ ++ S VE+ P ++ + + ++
Sbjct: 117 FKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVL 160
>gi|385801330|ref|YP_005837733.1| translation initiation factor IF-3, C-terminal domain protein,
partial [Gardnerella vaginalis HMP9231]
gi|417556119|ref|ZP_12207179.1| translation initiation factor IF-3 [Gardnerella vaginalis 315-A]
gi|333393147|gb|AEF31065.1| translation initiation factor IF-3, C-terminal domain protein
[Gardnerella vaginalis HMP9231]
gi|333603143|gb|EGL14565.1| translation initiation factor IF-3 [Gardnerella vaginalis 315-A]
Length = 245
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I VRL+ +G +V ++ AL LA+ DLVEV A PPV K++D+ K
Sbjct: 19 PRINEEIRVSQVRLIGPKGEQVGVIATSVALNLAKEANLDLVEVAPTAKPPVAKLIDYGK 78
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY +++K ++ + +S + KE+RF KI+ D +K V R ++ G +VK
Sbjct: 79 YKYNEKIKAREARRNQS-----TAEIKEIRFRLKIDDHDFDVKKGHVLRFLNGGDKVKVT 133
Query: 199 ALPVGKKEETEDLGG--YLSRLIDLIEDISVVESGPHVE 235
+ G +E++ +GG L RL D + + +E P E
Sbjct: 134 IMLRG-REQSRPIGGVELLRRLADEVSESGTIEFAPKQE 171
>gi|241758599|ref|ZP_04756714.1| translation initiation factor IF-3 [Neisseria flavescens SK114]
gi|241321251|gb|EER57423.1| translation initiation factor IF-3 [Neisseria flavescens SK114]
Length = 155
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K KYQ+ K++D
Sbjct: 1 MRLISESGDQLGVVSVREALAMAEEQDVDLVEISPTAKPPVCKLMDYGKYKYQQA-KKRD 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ KE++F ++ D Q+K + R + G +VK G++ +
Sbjct: 60 EAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTLRFRGREMAHQ 115
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 116 QLGAQLLERVKEELAEVAQIESFPKMEGRQMVMMI-----APKKK 155
>gi|46198491|ref|YP_004158.1| translation initiation factor IF-3 [Thermus thermophilus HB27]
gi|55980520|ref|YP_143817.1| translation initiation factor IF-3 [Thermus thermophilus HB8]
gi|46196113|gb|AAS80531.1| bacterial protein translation initiation factor 3 (IF-3) [Thermus
thermophilus HB27]
gi|55771933|dbj|BAD70374.1| translation initiation factor 3 (IF-3) [Thermus thermophilus HB8]
Length = 144
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 85/143 (59%), Gaps = 8/143 (5%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD-RAKAKSDITLKKGDCK 165
EAL LA+ + DLV V A+PPV +IMD+ K +Y++++ EK+ R KA K+ + K
Sbjct: 5 EALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRYEQQMAEKEARKKA------KRTEVK 58
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIED 224
++F KI++ D Q K +KR + +G++VK + G++ +LG L+R+ + ++D
Sbjct: 59 SIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKD 118
Query: 225 ISVVESGPHVERKQAYAIIRHVK 247
++VVE P + + ++ VK
Sbjct: 119 LAVVEMKPEMLGRDMNMLLAPVK 141
>gi|398830769|ref|ZP_10588950.1| translation initiation factor IF-3 [Phyllobacterium sp. YR531]
gi|398213349|gb|EJM99942.1| translation initiation factor IF-3 [Phyllobacterium sp. YR531]
Length = 170
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 14/173 (8%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ EG H +V+ ALA+A DLVE+ A PPVCKI+
Sbjct: 3 QKDGPRSNRDIRVPQVQLIDAEGENHGIVTIQAALAMADEAGLDLVEIVPNAEPPVCKIV 62
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + + + KE++ I+ D +K +KR ++G +
Sbjct: 63 DLGKLKYQGQKKAAEARKKQKTVEI-----KEIKMRPNIDTHDYDVKMRAIKRFFEEGDK 117
Query: 195 VKCMALPVGKKEETEDLGGYLSRLIDLIE----DISVVESGPHVERKQAYAII 243
VK G++ ++LG RL+D ++ +IS VE+ P +E +Q ++
Sbjct: 118 VKVTLRFRGREMAHQELG---MRLLDKVKEDTVEISKVEAEPKLEGRQMMMVL 167
>gi|397689073|ref|YP_006526327.1| translation initiation factor IF-3 [Melioribacter roseus P3M]
gi|395810565|gb|AFN73314.1| translation initiation factor IF-3 [Melioribacter roseus P3M]
Length = 169
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A +RL+ ++G +V VS EAL AR DLVE+ +A PPVCKI+D+ K
Sbjct: 1 MNEEIRAPEIRLIDEKGEQVGIVSVKEALNRAREAGMDLVEIAPQAKPPVCKIIDYGKFA 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ +EK + K K +T+ KE+R + D + KA + ++ G +VK +
Sbjct: 61 YEQQKREKMQ-KKKQQVTV----LKEIRLHPNTDTHDFEFKARHAAKFIEDGNKVKVSVI 115
Query: 201 PVGKKEETEDLGGYLSR-LIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L R +D + D++ VE P E + +AI+
Sbjct: 116 FKGRELAYTEIGEELLRKFLDKLSDVAKVEQEPKFEGRAMHAIL 159
>gi|420153044|ref|ZP_14660040.1| translation initiation factor IF-3 [Actinomyces massiliensis F0489]
gi|394761972|gb|EJF44283.1| translation initiation factor IF-3 [Actinomyces massiliensis F0489]
Length = 195
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRVEDALRLAEEAGLDLVEVAPDARPPVCKLMDYGKFKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI+Q D K ++R + G +VKC+ G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDQHDYATKMGHIERFLKGGDKVKCIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L R+ + ++++ VES P
Sbjct: 116 ELGIRLLQRVAEEMDELGTVESHP 139
>gi|373252650|ref|ZP_09540768.1| translation initiation factor 3 [Nesterenkonia sp. F]
Length = 205
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +A LA DLVEV ++ PPVCK+MDF K KY+ +K ++ K ++ L
Sbjct: 3 IVRIEDAQRLASEADLDLVEVAPRSKPPVCKLMDFGKWKYEAAVKARESRKNQTATVL-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KEVRF KI++ D + K +R + G +VK + G++++ ++G L R+ D
Sbjct: 61 ---KEVRFRLKIDEHDYETKVGNARRFLSAGDKVKAIIQFRGREQQRPEMGVRLLRRVAD 117
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ED+ VES P + + +I
Sbjct: 118 DLEDLGAVESTPRQDGRHMVMVI 140
>gi|301629969|ref|XP_002944104.1| PREDICTED: threonyl-tRNA synthetase-like [Xenopus (Silurana)
tropicalis]
Length = 841
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 11/192 (5%)
Query: 55 DFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGH--KVVSRHEALALA 112
D + V+ A + +++++E++ RLN +I A VRL E +VS +AL +A
Sbjct: 634 DIASKVKTIATEFRDRRQREERKH---RLNREITAPEVRLSGPENEPIGIVSLQDALRMA 690
Query: 113 RSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGK 172
+ DLVE+ A+PPVC++MD+ K KYQ++ K + ++ I + KEV+F
Sbjct: 691 GDMDVDLVEIAATASPPVCRLMDYGKFKYQEQKKAAEAKAKQTVI-----EIKEVKFRPG 745
Query: 173 IEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESG 231
+ D +K ++R + +G + K G++ ++LG LSR+ D + D+ VVE
Sbjct: 746 TDDGDYNIKLRNIRRFLAEGDKCKITLRFRGREITHQELGLALLSRIRDDLADLIVVEQF 805
Query: 232 PHVERKQAYAII 243
P +E KQ +I
Sbjct: 806 PKLEGKQMIMMI 817
>gi|294626196|ref|ZP_06704802.1| translation initiation factor IF-3 [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294667580|ref|ZP_06732795.1| translation initiation factor IF-3 [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325927168|ref|ZP_08188431.1| bacterial translation initiation factor 3 (bIF-3) [Xanthomonas
perforans 91-118]
gi|292599548|gb|EFF43679.1| translation initiation factor IF-3 [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292602700|gb|EFF46136.1| translation initiation factor IF-3 [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325542481|gb|EGD13960.1| bacterial translation initiation factor 3 (bIF-3) [Xanthomonas
perforans 91-118]
Length = 147
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 4 VLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQ 58
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 59 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEA 118
Query: 220 DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
DL +DI V+ES P +E +Q +I P KK
Sbjct: 119 DLGDDI-VIESRPRLEGRQMVMMI-----APKKK 146
>gi|146276385|ref|YP_001166544.1| translation initiation factor IF-3 [Rhodobacter sphaeroides ATCC
17025]
gi|145554626|gb|ABP69239.1| bacterial translation initiation factor 3 (bIF-3) [Rhodobacter
sphaeroides ATCC 17025]
Length = 194
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 10/170 (5%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+N++I +RL+ G + V+ A+++A DLVE+ A PPVCKIMDF
Sbjct: 27 TGPRVNERIRCPEIRLIGANGENIGIVTPSRAMSMAEEAGLDLVEISPNAEPPVCKIMDF 86
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KE++F + D +K +V + + +G +VK
Sbjct: 87 GKFKYEQQKREAE-ARKKQHII----EIKEIKFRPGTDTHDFDVKMRSVLKFLGEGDKVK 141
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISV--VESGPHVERKQAYAII 243
G++ ++LG L+R+ + + V VE+ P +E +Q +I
Sbjct: 142 VTLRFRGREMAHQELGLELLNRVAAQVSEAEVGKVEAMPKLEGRQMVMMI 191
>gi|374313266|ref|YP_005059696.1| translation initiation factor IF-3 [Granulicella mallensis
MP5ACTX8]
gi|358755276|gb|AEU38666.1| Translation initiation factor IF-3 [Granulicella mallensis
MP5ACTX8]
Length = 208
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N++I A+ VR++ + G + V++ EAL +AR DLVE+ A PPVCKI D+ K
Sbjct: 14 RTNERIRAREVRVIDENGEQLGVMAPFEALKMAREKSLDLVEISPNAVPPVCKIQDYGKY 73
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+K+ + DRA K + KEV+FS +++ D Q K + R + G +VK
Sbjct: 74 LYEKD--KSDRAARKKQKVIV---IKEVKFSVTVDEHDYQTKKNQAVRFLGDGDKVKASL 128
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ DLG ++RLI I + VE P +E +AI+
Sbjct: 129 RFKGRQMAHRDLGYKIINRLIMDIGEAGTVEFMPRMEGTTLHAIL 173
>gi|319637848|ref|ZP_07992614.1| translation initiation factor IF-3 [Neisseria mucosa C102]
gi|317401003|gb|EFV81658.1| translation initiation factor IF-3 [Neisseria mucosa C102]
Length = 155
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K KYQ+ K++D
Sbjct: 1 MRLISESGDQLGVVSVREALAMAEEQDVDLVEISPTAKPPVCKLMDYGKYKYQQA-KKRD 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ KE++F ++ D Q+K + R + G +VK G++ +
Sbjct: 60 EAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTLRFRGREMAHQ 115
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 116 QLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 155
>gi|218779645|ref|YP_002430963.1| translation initiation factor IF-3 [Desulfatibacillum alkenivorans
AK-01]
gi|218761029|gb|ACL03495.1| translation initiation factor IF-3 [Desulfatibacillum alkenivorans
AK-01]
Length = 174
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N KI A+ VRL+ G++V + H+AL++A + DLVEV A+PPVCKIMD+ K K
Sbjct: 10 INKKIRAKEVRLIDQNGNQVGVIPIHQALSVAEASGLDLVEVSPNASPPVCKIMDYGKFK 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K ++ K S ++ KE++ K DL K +KR + +VK +
Sbjct: 70 YQQTKKLQEAKKKASSFSV-----KEIKVRPKTGDHDLDTKIGHIKRFLANNDKVKVTVM 124
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ D G L R+ D + +VVE P E + ++
Sbjct: 125 FRGREIAFADRGRAMLKRVQDATAEFAVVEQFPKFEGRTMIMVL 168
>gi|375089711|ref|ZP_09736036.1| translation initiation factor IF-3 [Facklamia languida CCUG 37842]
gi|374566558|gb|EHR37797.1| translation initiation factor IF-3 [Facklamia languida CCUG 37842]
Length = 195
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N +I A+ +R++ D G + V S +AL +A S DLV V +A PPV +IMD+ K +
Sbjct: 29 INGEIRAKELRVIGDNGEQIGVKSLQDALTIAESFDLDLVLVSPQAKPPVARIMDYGKYR 88
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK++ K I + KEVR S I+ D Q K + ++KG +VK
Sbjct: 89 YEQQKKEKEQRKNAKVI-----NVKEVRLSPSIDDHDYQTKLRQAIKFLEKGDKVKASIR 143
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +DLG L I+ +++++VES P +E + + ++
Sbjct: 144 FRGRSITHKDLGRDVLEDFIEDTQEVAIVESKPTMEGRSMFMLL 187
>gi|385270577|ref|YP_005813737.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Chlamydia
trachomatis A2497]
gi|347975717|gb|AEP35738.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Chlamydia
trachomatis A2497]
Length = 198
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PVCKIMD+ K
Sbjct: 29 RINRQIRAPRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSESPVCKIMDYGKY 88
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 89 RYDVTKKEKDSKKAQHRVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 143
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 144 MFRGRELAYPEHGHKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 188
>gi|83594817|ref|YP_428569.1| translation initiation factor 3 [Rhodospirillum rubrum ATCC 11170]
gi|386351582|ref|YP_006049830.1| translation initiation factor 3 [Rhodospirillum rubrum F11]
gi|83577731|gb|ABC24282.1| bacterial translation initiation factor 3 (bIF-3) [Rhodospirillum
rubrum ATCC 11170]
gi|346720018|gb|AEO50033.1| translation initiation factor 3 [Rhodospirillum rubrum F11]
Length = 173
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 13/180 (7%)
Query: 67 VQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDR 124
+QA KD GPR N +I VRL+ + G V VS +ALA A + DLVE+
Sbjct: 1 MQAPPSKD-----GPRANREIRIPEVRLIDENGDNVGVVSTRDALARAEAAGLDLVEISP 55
Query: 125 KANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADT 184
A PPVCKI+D K KY+ + K+ + K + I + KE++ I++ D +K
Sbjct: 56 NAEPPVCKILDLGKFKYEAQKKKNEAKKKQKVIEI-----KEIKLRPNIDEHDYDVKMRA 110
Query: 185 VKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
KR +++G +VK G++ +DLG L R+ + + D++ VE P +E +Q ++
Sbjct: 111 AKRFLEEGDKVKVTMRFRGREMAHQDLGMNVLKRVSEDVADLAKVEQHPKLEGRQMIMVM 170
>gi|281423151|ref|ZP_06254064.1| translation initiation factor IF-3 [Prevotella oris F0302]
gi|281402487|gb|EFB33318.1| translation initiation factor IF-3 [Prevotella oris F0302]
Length = 231
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 22/190 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V ++G +VV +AL +A DLVE+ A PPVC+
Sbjct: 2 KNDKLKNQYRVNEQIRVREVRIVGEDGSEVVPTRKALDMAHQKGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
++D+ K +K+QKE+K+K K + KE+RF + ++ D Q K +
Sbjct: 62 LIDYSKFLYQQKKHQKEMKQKQV----------KVEVKEIRFGPQTDEHDYQFKLKHARE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G +V+ G+ KE+ E L L R + +E+ VE P +E K+ + +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEFGKVEQMPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKK 253
K G KK
Sbjct: 169 APKKVGVVKK 178
>gi|238063946|ref|ZP_04608655.1| translation initiation factor IF-3 [Micromonospora sp. ATCC 39149]
gi|237885757|gb|EEP74585.1| translation initiation factor IF-3 [Micromonospora sp. ATCC 39149]
Length = 216
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG +V V AL LA + DLVEV A PPVCK+MDF K K
Sbjct: 1 MNEQIRAREVRLVGPEGEQVGIVPLERALQLAADVDLDLVEVAPMARPPVCKLMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ LK ++ + + + KE++ KI+ D + K V R + G +VK +
Sbjct: 61 YESALKAREARRNQQQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
G+++ +LG L RL I ++ VE+ P
Sbjct: 116 FRGREQSRPELGYRLLRRLESEITELGYVEAAP 148
>gi|260887110|ref|ZP_05898373.1| translation initiation factor IF-3 [Selenomonas sputigena ATCC
35185]
gi|330839117|ref|YP_004413697.1| Translation initiation factor IF-3 [Selenomonas sputigena ATCC
35185]
gi|260863172|gb|EEX77672.1| translation initiation factor IF-3 [Selenomonas sputigena ATCC
35185]
gi|329746881|gb|AEC00238.1| Translation initiation factor IF-3 [Selenomonas sputigena ATCC
35185]
Length = 193
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VR+ G + +++ +AL +A DLVEV KA PPVC+IMDF K
Sbjct: 24 RINEEIRIREVRVTSASGEQLGIMATRDALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKY 83
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + +T+ KEV+ IEQ D +K R +++G +VK
Sbjct: 84 RYEQQKREKEAKKKQKIVTI-----KEVKLRPNIEQHDFDVKLKNALRFLEEGNKVKVTI 138
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+++ D ++++ +E +E K I+
Sbjct: 139 MFRGRELSHPELGREVLNKVADRLKELVSIERDAKLEGKNMTMIL 183
>gi|386857282|ref|YP_006261459.1| translation initiation factor IF-3 [Deinococcus gobiensis I-0]
gi|380000811|gb|AFD26001.1| Translation initiation factor IF-3 [Deinococcus gobiensis I-0]
Length = 199
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 88/155 (56%), Gaps = 10/155 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + +RL+ EG ++ + +A+ +AR DLV V +A PPVC+++D+ +
Sbjct: 9 KVNEQIRVRQIRLIGAEGEQIGIIDTRDAMNMAREKALDLVMVSPQAVPPVCRLLDYGRF 68
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ EK+ R +A+S + K ++F KI+ D K V+R +++G++VK
Sbjct: 69 RYEQQQNEKENRKRARSQ------EVKAIKFRVKIDDHDFNTKTGHVRRFLEEGHKVKVT 122
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ D + DI E P
Sbjct: 123 IMFRGRERTHPELGERILVRVADTLSDIGAPEGTP 157
>gi|422512789|ref|ZP_16588916.1| translation initiation factor IF-3 [Propionibacterium acnes
HL087PA2]
gi|313808092|gb|EFS46569.1| translation initiation factor IF-3 [Propionibacterium acnes
HL087PA2]
Length = 278
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+N++I VRLV G +V V +AL LAR DLVEV +A PPV K+MD
Sbjct: 52 STEPRINERIRVPEVRLVGPNGEQVGIVRVEQALQLAREQDLDLVEVAPQARPPVVKLMD 111
Query: 136 FHKEKYQ--KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+ K KY+ ++ +E R +A S I KE++ KI+ D + K V R + G
Sbjct: 112 YGKFKYEAAQKARESRRNQANSII-------KEMKLRPKIDDHDYETKKGHVLRFLKAGD 164
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK + G+++ +LG L RL D + + + VES P E + I+
Sbjct: 165 KVKITIMFRGREQSRPELGVNLLRRLADDLTEYATVESPPKQEGRNMLMIL 215
>gi|51892229|ref|YP_074920.1| translation initiation factor IF-3 [Symbiobacterium thermophilum
IAM 14863]
gi|51855918|dbj|BAD40076.1| translation initiation factor IF-3 [Symbiobacterium thermophilum
IAM 14863]
Length = 199
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ + A+ VRL+ + G + V S EA +A+ DLVEV A PPVCK+MD+ +
Sbjct: 23 RVNEMVRAREVRLIDENGEQLGVFSSREAFRIAQERGLDLVEVAPNAKPPVCKLMDYGRY 82
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ +E++ K + IT+ KEV+ I+ D ++ + + G +VK
Sbjct: 83 KYEQAKREREARKKQKVITI-----KEVKMRPNIDDHDFAVRQRQAESFLRDGDKVKATI 137
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ LG L RL++ ++DI VVE P +E + I+
Sbjct: 138 MFRGREVVHAQLGKEVLDRLLETVKDICVVERPPRLEGRNMIMIL 182
>gi|168039904|ref|XP_001772436.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676233|gb|EDQ62718.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 421
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPV 130
++E + G LN I VRLV +E + V V EAL AR+ DLV + A+PPV
Sbjct: 188 REEVKGDGTLLNGDITVPNVRLVDEEQNMVGVVPTAEALQRARNADLDLVAISLDADPPV 247
Query: 131 CKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMD 190
C+IMD+ K +Y+ + K+++ A+ + D KE++ I+ D ++ + K+ +
Sbjct: 248 CRIMDYSKFRYEAQKKKRE---AQKKALASRQDLKELKIRYNIDVHDYDVRLRSAKKFLK 304
Query: 191 KGYRVKCMALPV-----GKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAIIR 244
G +V + V G++ + +DL L R ID + ++ ++ES P +E +Q ++
Sbjct: 305 DGDKVDICHVKVVCQFKGREMDFKDLAFKLFQRFIDDVGELGLIESKPAIEGRQMIMML- 363
Query: 245 HVKFGPSKKGGLKKLKA 261
GP+ K + KL+A
Sbjct: 364 ----GPN-KAAVAKLQA 375
>gi|209966089|ref|YP_002299004.1| translation initiation factor IF-3 [Rhodospirillum centenum SW]
gi|209959555|gb|ACJ00192.1| translation initiation factor IF-3 InfC [Rhodospirillum centenum
SW]
Length = 144
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS +AL A DLVEV A+PPVCKI+D+ K KY+ + K+ + A+ K I
Sbjct: 4 VVSLRDALIAAEEAGLDLVEVSPNADPPVCKILDYGKFKYEAQ-KKANEARKKQKII--- 59
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGY-LSRLID 220
+ KEV+ I+ D +K ++R +++G +VK G++ +DLG L ++ D
Sbjct: 60 -EVKEVKLRPNIDDHDYDIKMRNMRRFLEEGDKVKVTMRFRGREMAHQDLGMVILVKVRD 118
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ED++ VE P +E KQ ++
Sbjct: 119 TLEDLAKVEQMPKLEGKQMIMVL 141
>gi|254457526|ref|ZP_05070954.1| translation initiation factor IF-3 [Sulfurimonas gotlandica GD1]
gi|373867719|ref|ZP_09604117.1| translation initiation factor IF3 [Sulfurimonas gotlandica GD1]
gi|207086318|gb|EDZ63602.1| translation initiation factor IF-3 [Sulfurimonas gotlandica GD1]
gi|372469820|gb|EHP30024.1| translation initiation factor IF3 [Sulfurimonas gotlandica GD1]
Length = 163
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I +R +D G ++S EA++ A L DLV + A PPV KIMD+ K +
Sbjct: 1 MNDDIRVAELRCSIDGGESLGIISTDEAMSKANELGMDLVLIAPTAKPPVAKIMDYGKYR 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K K++ K + I + KE++ S KI + D+ K + ++KG+ VK
Sbjct: 61 YQEEKKLKEQRKNQVKIVV-----KEIKLSVKIAENDIAYKVKHAREFLEKGFHVKFRVF 115
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVE 235
G++ + G L R+ ++ED+ ++E P E
Sbjct: 116 LRGREMAHPEAGKEVLLRVWPMVEDLGIMEKPPKFE 151
>gi|254524881|ref|ZP_05136936.1| translation initiation factor IF-3 [Stenotrophomonas sp. SKA14]
gi|219722472|gb|EED40997.1| translation initiation factor IF-3 [Stenotrophomonas sp. SKA14]
Length = 154
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 8/144 (5%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EAL++A DLVE+ +A+PPVCKIMDF K K++ + K+ + AK KS K+
Sbjct: 11 VLSRDEALSMAEDEGLDLVEIQPQADPPVCKIMDFGKFKFEAQ-KKANEAKKKS----KQ 65
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KEV+F ++ D Q+K ++ ++ G ++K G++ ++LG ++ I
Sbjct: 66 VEIKEVKFRPVTDEGDYQIKLRKMREFLEDGDKIKVNIRFRGREMSHQELGREMANRIEA 125
Query: 220 DLIEDISVVESGPHVERKQAYAII 243
DL EDI V+ES P +E +Q +I
Sbjct: 126 DLGEDI-VIESRPRLEGRQMVMMI 148
>gi|148381086|ref|YP_001255627.1| translation initiation factor IF-3 [Clostridium botulinum A str.
ATCC 3502]
gi|148290570|emb|CAL84699.1| translation initiation factor IF-3 [Clostridium botulinum A str.
ATCC 3502]
Length = 173
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM++ K
Sbjct: 10 MNEQIREREVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNYGKFL 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I + KEVR S IE D+++KA+ ++ ++ G +VK
Sbjct: 70 YEQTKKDKEAKKNQKVI-----NIKEVRLSPTIEAHDIEIKANNARKFLNAGNKVKVTVR 124
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L + +E++SV+E P +E + I+
Sbjct: 125 FRGREADYSFKGNKILKSFYEKVEELSVMEKAPKLEGRNMIMIL 168
>gi|373460077|ref|ZP_09551837.1| translation initiation factor IF-3 [Prevotella maculosa OT 289]
gi|371956872|gb|EHO74649.1| translation initiation factor IF-3 [Prevotella maculosa OT 289]
Length = 231
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 22/180 (12%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V ++G +VV +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKLKNQYRVNEQIRVREVRIVGEDGSEVVPTRKALDMARQQGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
++D+ K +K+QKE+K+K K + KE+RF + ++ D Q K K
Sbjct: 62 LIDYSKFLYQQKKHQKEIKQKQ----------VKVEVKEIRFGPQTDEHDYQFKLKHAKG 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G +V+ G+ KE+ E L L R + +E+ VE P +E K+ + +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPKLEGKKMFLYL 168
>gi|379715242|ref|YP_005303579.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 316]
gi|387140544|ref|YP_005696522.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 1/06-A]
gi|355392335|gb|AER69000.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 1/06-A]
gi|377653948|gb|AFB72297.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 316]
Length = 148
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +A LA DLVEV A PPVCKIMD+ K KY++ K ++ K + L
Sbjct: 3 IVRIDDARKLAYEADLDLVEVAPNAKPPVCKIMDYGKFKYEQAQKAREARKNQQQTVL-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE +F KI+ D + K + V R ++KG +VK + G+++ +LG L RL D
Sbjct: 61 ---KEQKFRPKIDDHDYETKKNNVIRFLEKGSKVKVTIMFRGREQSRPELGFRLLERLAD 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ D +VE+ P + + + FGP +KG
Sbjct: 118 DVADFGIVETKPKQDGRNMTMV-----FGPVRKG 146
>gi|387819403|ref|YP_005679750.1| translation initiation factor 3 [Clostridium botulinum H04402 065]
gi|322807447|emb|CBZ05021.1| translation initiation factor 3 [Clostridium botulinum H04402 065]
Length = 165
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM++ K
Sbjct: 1 MNEQIREKEVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNYGKFL 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I L KEVR S IE D+++KA+ K+ ++ G +VK
Sbjct: 61 YEQTKKDKEAKKNQKIINL-----KEVRLSPTIEAHDIEIKANNAKKFLNAGNKVKVTVR 115
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L+ +E+ V+E P +E + I+
Sbjct: 116 FRGREADYSFKGNKILNSFYAKVEEAGVIEKAPKLEGRNMIMIL 159
>gi|397670714|ref|YP_006512249.1| translation initiation factor IF-3 [Propionibacterium propionicum
F0230a]
gi|395142990|gb|AFN47097.1| translation initiation factor IF-3 [Propionibacterium propionicum
F0230a]
Length = 245
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+N++I VRLV +G +V V +AL LA DLVEV +A PPV K+MD
Sbjct: 21 STEPRINERIRVPEVRLVGPKGEQVGIVRLEDALRLAVESDLDLVEVAPQARPPVAKLMD 80
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K +D + +S+ KE++ KI+ D + K V R + G +V
Sbjct: 81 YGKFKYEAAQKARDARRNQSNTI-----TKEMKLRLKIDNHDYETKKGHVVRFLKAGDKV 135
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL D + + VES P + + ++ GP+KK
Sbjct: 136 KITIMFRGREQSRPELGIDLLKRLADDVAEHGFVESAPRQDGRNMLMVL-----GPTKK 189
>gi|154250663|ref|YP_001411487.1| translation initiation factor IF-3 [Parvibaculum lavamentivorans
DS-1]
gi|171769438|sp|A7HPJ7.1|IF3_PARL1 RecName: Full=Translation initiation factor IF-3
gi|154154613|gb|ABS61830.1| translation initiation factor IF-3 [Parvibaculum lavamentivorans
DS-1]
Length = 173
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+ND I+ V L+ EG K V+ EA+ +A DLVEV A PPVCK++D+
Sbjct: 9 GPRINDMIDEPTVLLIDAEGEKRGVIPTDEAIRMAEEAGLDLVEVSPNAKPPVCKLLDYG 68
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KYQ + K + K + + + KE++ I+ D ++K + R ++G +VK
Sbjct: 69 KFKYQAQKKANEARKKQKTV-----EVKEIKMRPNIDTHDYEVKMRAMLRFFEEGDKVKV 123
Query: 198 MALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L+++ + +E I+ VE P +E +Q ++
Sbjct: 124 TLRFRGREMAHQELGMVLLNKVKEEVEPIAKVELYPRLEGRQMIMVL 170
>gi|300787907|ref|YP_003768198.1| translation initiation factor IF-3 [Amycolatopsis mediterranei U32]
gi|399539790|ref|YP_006552452.1| translation initiation factor IF-3 [Amycolatopsis mediterranei
S699]
gi|299797421|gb|ADJ47796.1| translation initiation factor IF-3 [Amycolatopsis mediterranei U32]
gi|398320560|gb|AFO79507.1| translation initiation factor IF-3 [Amycolatopsis mediterranei
S699]
Length = 205
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S R+ND+I VRLV G +V V +AL LA+ DLVEV +A PPVCK+MD
Sbjct: 20 SSETRINDRIRVPEVRLVGPAGEQVGIVRIEDALRLAQENDLDLVEVAPQARPPVCKLMD 79
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K KY+ K ++ ++ +T+ KE + KI+Q D + K V R + G +V
Sbjct: 80 FGKFKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDQHDYETKKGHVSRFLAAGNKV 134
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
K + G+++ +LG L +L + + ++ VES
Sbjct: 135 KVTIMFRGREQSRPELGYRLLQKLAEDVTELGFVES 170
>gi|145594425|ref|YP_001158722.1| translation initiation factor IF-3 [Salinispora tropica CNB-440]
gi|145303762|gb|ABP54344.1| bacterial translation initiation factor 3 (bIF-3) [Salinispora
tropica CNB-440]
Length = 204
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV EG +V V AL LA + DLVEV A PPVCK+MDF K K
Sbjct: 1 MNEQIRAREVRLVGPEGEQVGIVPLERALQLAADVDLDLVEVAPMARPPVCKLMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ LK ++ + + + KE++ KI+ D + K V R + G +VK +
Sbjct: 61 YESALKAREARRNQQQTVI-----KEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
G+++ +LG L RL I ++ VE+ P
Sbjct: 116 FRGREQSRPELGYRLLRRLESEISELGYVEAAP 148
>gi|299140595|ref|ZP_07033733.1| translation initiation factor IF-3 [Prevotella oris C735]
gi|298577561|gb|EFI49429.1| translation initiation factor IF-3 [Prevotella oris C735]
Length = 231
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 27/195 (13%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V ++G +VV +AL +A DLVE+ A PPVC+
Sbjct: 2 KNDKLKNQYRVNEQIRVREVRIVGEDGSEVVPTRKALDMAHQKGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
++D+ K +K+QKE+K+K K + KE+RF + ++ D Q K +
Sbjct: 62 LIDYSKFLYQQKKHQKEMKQKQV----------KVEVKEIRFGPQTDEHDYQFKLKHARE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+++G +V+ G+ KE+ E L L R + +E+ VE P +E K+ + +
Sbjct: 112 FLNEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEFGKVEQMPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKK 258
P K G +KK
Sbjct: 169 -----APKKVGVVKK 178
>gi|260575175|ref|ZP_05843175.1| translation initiation factor IF-3 [Rhodobacter sp. SW2]
gi|259022435|gb|EEW25731.1| translation initiation factor IF-3 [Rhodobacter sp. SW2]
Length = 226
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+ND+I +RL+ +G V VS A+A+A DLVE+ A PPVCKIMDF
Sbjct: 61 TGPRVNDRIRNAEIRLIGADGENVGIVSPAAAMAMALEAGLDLVEISPNAEPPVCKIMDF 120
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KE++F + D +K +V + +++G +VK
Sbjct: 121 GKYKYEQQKREAE-ARKKQHII----ETKEIKFRPGTDTHDYDVKMRSVLKFLEEGDKVK 175
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L+R+ + + VES P +E +Q +I
Sbjct: 176 VTLRFRGREMAHQELGLELLNRVAADVGEAGKVESMPRLEGRQMVMMI 223
>gi|422341552|ref|ZP_16422493.1| translation initiation factor IF-3 [Treponema denticola F0402]
gi|449104633|ref|ZP_21741371.1| translation initiation factor IF-3 [Treponema denticola AL-2]
gi|449105326|ref|ZP_21742031.1| translation initiation factor IF-3 [Treponema denticola ASLM]
gi|449108820|ref|ZP_21745461.1| translation initiation factor IF-3 [Treponema denticola ATCC 33520]
gi|449116427|ref|ZP_21752877.1| translation initiation factor IF-3 [Treponema denticola H-22]
gi|449119509|ref|ZP_21755905.1| translation initiation factor IF-3 [Treponema denticola H1-T]
gi|449121900|ref|ZP_21758246.1| translation initiation factor IF-3 [Treponema denticola MYR-T]
gi|449124220|ref|ZP_21760539.1| translation initiation factor IF-3 [Treponema denticola OTK]
gi|449129228|ref|ZP_21765459.1| translation initiation factor IF-3 [Treponema denticola SP37]
gi|451969632|ref|ZP_21922861.1| translation initiation factor IF-3 [Treponema denticola US-Trep]
gi|325475123|gb|EGC78309.1| translation initiation factor IF-3 [Treponema denticola F0402]
gi|448942551|gb|EMB23445.1| translation initiation factor IF-3 [Treponema denticola OTK]
gi|448946070|gb|EMB26935.1| translation initiation factor IF-3 [Treponema denticola SP37]
gi|448949341|gb|EMB30166.1| translation initiation factor IF-3 [Treponema denticola MYR-T]
gi|448950499|gb|EMB31321.1| translation initiation factor IF-3 [Treponema denticola H1-T]
gi|448953970|gb|EMB34756.1| translation initiation factor IF-3 [Treponema denticola H-22]
gi|448961095|gb|EMB41803.1| translation initiation factor IF-3 [Treponema denticola ATCC 33520]
gi|448962769|gb|EMB43455.1| translation initiation factor IF-3 [Treponema denticola AL-2]
gi|448967313|gb|EMB47954.1| translation initiation factor IF-3 [Treponema denticola ASLM]
gi|451701729|gb|EMD56190.1| translation initiation factor IF-3 [Treponema denticola US-Trep]
Length = 194
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 11/180 (6%)
Query: 62 FFAAPV-QAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCD 118
++ AP+ + + + E G R+ND+I + VRL+ G + +V EA+ +A D
Sbjct: 6 YYIAPIGKGAEGESLAEVKGLRINDQIRVREVRLIGVNGEQAGIVPTIEAVKMAAEAGLD 65
Query: 119 LVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDL 178
LVEV A PPVCKI+D+ K ++Q E K +D K + K+ +E+R KI DL
Sbjct: 66 LVEVAPTAKPPVCKIIDYGKYRFQMEKKLRDSKKNQ-----KQQMMREIRMQPKIHDHDL 120
Query: 179 QMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLI--EDISVVESGPHVE 235
+ K+ +K+ +D G +VK G++ +LG L+++++ + E+ +E P +E
Sbjct: 121 EFKSSHIKKFLDGGDKVKVTVRFWGRELAHTELGYEVLNKVLEKLGGEEACTLEKKPAME 180
>gi|336323968|ref|YP_004603935.1| translation initiation factor IF-3 [Flexistipes sinusarabici DSM
4947]
gi|336107549|gb|AEI15367.1| Translation initiation factor IF-3 [Flexistipes sinusarabici DSM
4947]
Length = 176
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 15/185 (8%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPP 129
KK +KE R+N++I VRL+L+ G + +VS EAL +A DLVE+ +A PP
Sbjct: 4 KKADKE----RVNEEITGSEVRLILENGEQKGIVSLEEALNIANESGYDLVEIAPQAKPP 59
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VCK+MD+ K K++K KEK+ K + + + KE++F KIE+ D K ++R +
Sbjct: 60 VCKVMDYGKFKFEKAKKEKEARKKQRQNQI---EVKEIKFRPKIEEHDYNTKMKHIRRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+G +VK + G++ +D G L R++ + D+ VVE P ++ + +I
Sbjct: 117 SEGNKVKVVVRFRGREMIYKDHGLELLDRVVKELGDLCVVEKKPEMQGRLQTMVI----- 171
Query: 249 GPSKK 253
GPS +
Sbjct: 172 GPSNE 176
>gi|17546297|ref|NP_519699.1| translation initiation factor IF-3 [Ralstonia solanacearum GMI1000]
gi|20138471|sp|Q8XZ28.1|IF3_RALSO RecName: Full=Translation initiation factor IF-3
gi|17428594|emb|CAD15280.1| probable translation initiation factor if-3 protein [Ralstonia
solanacearum GMI1000]
Length = 178
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A +RL EG + +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 13 RINREITAPEIRLTGVEGEQLGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ AK K + KEV+F + D ++K +KR +D+G R K
Sbjct: 73 KYQ-EQKKAHEAKLKQKVI----QVKEVKFRPGTDDGDYEVKLRNLKRFLDEGDRTKITL 127
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQ 238
G++ +++G L RL +E+ VE P +E +Q
Sbjct: 128 RFRGREMAHQEIGARMLDRLKTDLEEFGQVEQMPKMEGRQ 167
>gi|406950543|gb|EKD80783.1| translation initiation factor IF-3 [uncultured bacterium]
Length = 171
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A +R+V D G + V+S+ EALA+A+ DLVE+ A PPVCK++DF K K
Sbjct: 6 VNQFIKALEMRVVDDTGKQIGVLSKSEALAIAQERGVDLVEIAPMAKPPVCKVIDFKKFK 65
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y + K+++ A + + KE+RFS I Q D+ + + +K +++ G RVK +
Sbjct: 66 YLEAKKDREGKAASGKVEI-----KEIRFSPFIAQGDMNSRLERIKDILEGGDRVKIVVK 120
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + G + +++ +E ++ + ++ KQ + I+ P+KK
Sbjct: 121 FTGRQITKVEFGHDLIKKILISLEGLASADGVSKLQGKQLFLIV-----NPTKK 169
>gi|282855602|ref|ZP_06264916.1| translation initiation factor IF-3 [Pyramidobacter piscolens W5455]
gi|282586532|gb|EFB91786.1| translation initiation factor IF-3 [Pyramidobacter piscolens W5455]
Length = 193
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++INA+ + ++ +EG K V++ E +A A + DLVEV NPPVC+I+DF K
Sbjct: 20 PRVNEEINAEQILVIDNEGKKLGVMTPAEGIAAAEERELDLVEVAPDGNPPVCRILDFGK 79
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+YQ++ ++KD K + L KE++ KI++ D K V + ++ G+RVK
Sbjct: 80 YRYQQQKRDKDARKKQKVQAL-----KEIKMRPKIDEHDYDFKTKAVVKFLESGHRVKVS 134
Query: 199 ALPVGKKEETEDLG 212
G++ D G
Sbjct: 135 IFFRGREMAFLDKG 148
>gi|410667675|ref|YP_006920046.1| translation initiation factor IF-3 [Thermacetogenium phaeum DSM
12270]
gi|409105422|gb|AFV11547.1| translation initiation factor IF-3 [Thermacetogenium phaeum DSM
12270]
Length = 243
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ R+V +G + ++ E L +A DLVEV A PPVC+IMD+ K
Sbjct: 73 RVNEEIRAREARIVGSDGQQLGIMPVKEGLRIAMEQGLDLVEVAPHAKPPVCRIMDYGKY 132
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ +E+D K + I + KE++ IE+ D Q+K + +R + G +VK
Sbjct: 133 KYEQSKRERDARKKQRVINI-----KELKIRPGIEEHDFQVKVRSAQRFLSDGDKVKVTL 187
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R +E +++E P VE + I+
Sbjct: 188 MFRGREISHAELGHNLCMRFYQQLEKQAIMEKEPRVEGRNMIMIL 232
>gi|288802818|ref|ZP_06408255.1| translation initiation factor IF-3 [Prevotella melaninogenica D18]
gi|288334635|gb|EFC73073.1| translation initiation factor IF-3 [Prevotella melaninogenica D18]
Length = 219
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 22/186 (11%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK--- 138
R+N++I + VR+V D+G +V+ +AL LA+ DLVE+ A PPVC+I+D+ K
Sbjct: 4 RVNEQIRVREVRVVSDDGAEVMPTRKALELAQREGVDLVEISPNAQPPVCRIIDYSKFLY 63
Query: 139 --EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
+K+QKE+K+K K + KE+RF + ++ D + K + ++ G +V+
Sbjct: 64 QQKKHQKEMKQKQ----------VKQEVKEIRFGPQTDEHDYKFKLKHAQEFLNAGNKVR 113
Query: 197 CMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
G+ KE+ E L L R + +E+++ VE P +E K+ + + K G +K
Sbjct: 114 AYVFFRGRSILFKEQGEVL---LLRFSNDLEELAKVEQLPKLEGKKMFLYLAPKKAGVAK 170
Query: 253 KGGLKK 258
K K+
Sbjct: 171 KSQQKR 176
>gi|115375481|ref|ZP_01462741.1| translation initiation factor IF-3 [Stigmatella aurantiaca DW4/3-1]
gi|115367524|gb|EAU66499.1| translation initiation factor IF-3 [Stigmatella aurantiaca DW4/3-1]
Length = 249
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR+V G + V+S AL A+S DLVEV+ A PPVCKIMD+ K
Sbjct: 11 RTNRRIRAREVRVVGSAGEQLGVLSIEAALERAQSEGLDLVEVNPMAKPPVCKIMDYGKF 70
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+++ K + K + + L KEV+ K E+ D + K VKR +++G + K
Sbjct: 71 KYEEKKKASEAKKKQVVVHL-----KEVKLRPKTEEHDYEFKVRNVKRFLEEGNKAKVTI 125
Query: 200 LPVGKKEETEDLGGYLSRLIDL---IEDISVVESGPHVERKQAYAII 243
+ G++ ++LG + L D+ +++++VVE P +E +Q + I+
Sbjct: 126 VFRGREITHKELGSAI--LDDVNKDLKEVAVVEQAPRMEGRQMFMIL 170
>gi|255082722|ref|XP_002504347.1| predicted protein [Micromonas sp. RCC299]
gi|226519615|gb|ACO65605.1| predicted protein [Micromonas sp. RCC299]
Length = 390
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 73/122 (59%), Gaps = 10/122 (8%)
Query: 82 RLNDKINAQFVRLVLD---EG----HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
R+N++I A+ +RLV+ EG H+V+ A AR DLVE++ KA PPVC+++
Sbjct: 190 RINEQITARHIRLVMGGDGEGDTKSHEVIPTIVARKRARDAGLDLVEMNAKAVPPVCRML 249
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGD-CKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
D+ +Y EL+ K+R K + ++ D KE+R S +I DL+ KAD R +++G+
Sbjct: 250 DYDAFRY--ELRVKEREARKKAVERRRHDQVKELRLSARISTNDLRTKADQANRFLEQGH 307
Query: 194 RV 195
+V
Sbjct: 308 KV 309
>gi|304436954|ref|ZP_07396917.1| translation initiation factor IF3 [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369905|gb|EFM23567.1| translation initiation factor IF3 [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 188
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+ + VR+ EG + ++ +AL +A DLVEV KA PPVC+IMDF K
Sbjct: 2 RINEEIHIREVRVTSAEGEQLGIMLTRDALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 62 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 116
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + D+ +E G +E K I+
Sbjct: 117 MFRGRELSHPELGRVVLDRVSERLGDLVSIERGAKLEGKNMTMIL 161
>gi|404493039|ref|YP_006717145.1| translation initiation factor IF-3 [Pelobacter carbinolicus DSM
2380]
gi|404397975|gb|ABA88665.2| translation initiation factor IF-3 [Pelobacter carbinolicus DSM
2380]
Length = 171
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N I A+ VR+V + G V+S +EAL A DLVEV ANPPVC+IMD+ K
Sbjct: 7 RVNRAIRAKEVRVVDNVGEMLGVMSVNEALRAAEERGLDLVEVSPNANPPVCRIMDYGKY 66
Query: 140 KYQ--KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
KYQ K L E + A+ DI KEV+ K E+ D Q+K R ++ G +VK
Sbjct: 67 KYQASKRLAEAKKKSARVDI-------KEVKMRPKTEEHDFQVKLRNAMRFLEAGNKVKV 119
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHV 234
+ G++ + G + R+ + + D VE P +
Sbjct: 120 TVMFRGREVTHPEFGFDLMKRVAEEVGDAGQVEMSPRM 157
>gi|237653685|ref|YP_002889999.1| translation initiation factor IF-3 [Thauera sp. MZ1T]
gi|237624932|gb|ACR01622.1| translation initiation factor IF-3 [Thauera sp. MZ1T]
Length = 173
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VRLV +EG + +VS + +L +A DLVE+ A PPVCK+MDF K
Sbjct: 8 RVNREITAPEVRLVGEEGEQLGIVSLNASLNMAEEAGLDLVEIAPMAVPPVCKLMDFGKF 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ A+ K K+ KEV+ ++ D Q+K +KR +++G + K
Sbjct: 68 KYQ-EQKKAHEARLKQ----KQVQVKEVKLRPGTDENDYQIKLRNLKRFLEEGDKCKVTL 122
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ ++ G L R+ +E++ VE P +E +Q II P KK
Sbjct: 123 RFRGREMAHQEFGLRQLERVKADLEELGQVEQMPKMEGRQMIMII-----APKKK 172
>gi|15834841|ref|NP_296600.1| translation initiation factor IF-3 [Chlamydia muridarum Nigg]
gi|270285006|ref|ZP_06194400.1| translation initiation factor IF-3 [Chlamydia muridarum Nigg]
gi|270289029|ref|ZP_06195331.1| translation initiation factor IF-3 [Chlamydia muridarum Weiss]
gi|301336404|ref|ZP_07224606.1| translation initiation factor IF-3 [Chlamydia muridarum MopnTet14]
gi|14194839|sp|Q9PL86.1|IF3_CHLMU RecName: Full=Translation initiation factor IF-3
gi|7190260|gb|AAF39093.1| translation initiation factor 3 [Chlamydia muridarum Nigg]
Length = 186
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 83 LNDKINAQF----VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
LN KIN Q VR++ G + ++S EAL LAR DLVEV + PPVCKIMD+
Sbjct: 3 LNLKINRQIRAPRVRVIGSSGEQLGILSIKEALDLAREADLDLVEVASNSEPPVCKIMDY 62
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y KEKD KA+ + + KEV+ I+ D K + ++KG +VK
Sbjct: 63 GKYRYDVTKKEKDSKKAQHQVRV-----KEVKLKPNIDDNDFLTKVKQARAFIEKGNKVK 117
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +ED+ VES P + + +I
Sbjct: 118 VSCMFRGRELAYPEHGHKVVQRMCQGLEDVGFVESEPKLNGRSLICVI 165
>gi|15837339|ref|NP_298027.1| translation initiation factor IF-3 [Xylella fastidiosa 9a5c]
gi|9105627|gb|AAF83547.1|AE003916_1 initiation factor IF-3 [Xylella fastidiosa 9a5c]
Length = 159
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 95/155 (61%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VR++ +G V +SR EALA+A DLVE+ +A+PPVCK+M+F K K++++ K+ +
Sbjct: 4 VRVIGSDGEMVGVLSRDEALAMAEKEGLDLVEIQPQADPPVCKVMNFGKFKFEQQ-KKAN 62
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK G++ +
Sbjct: 63 EAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKINIRFRGREMSHQ 118
Query: 210 DLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
+LG ++ I++ + D V+ES P +E +Q ++
Sbjct: 119 ELGRQMATRIEMDLGDDVVIESRPRLEGRQMVMMV 153
>gi|158321005|ref|YP_001513512.1| translation initiation factor IF-3 [Alkaliphilus oremlandii OhILAs]
gi|158141204|gb|ABW19516.1| translation initiation factor IF-3 [Alkaliphilus oremlandii OhILAs]
Length = 142
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 103 VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKG 162
+S +A LA DLV++ +ANPPVCKIMDF K KY+ KEK+ K + +
Sbjct: 1 MSAKDAQKLANGKNLDLVKIAPQANPPVCKIMDFGKYKYELSKKEKEARKNQKIV----- 55
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDL 221
D KEVR S IE DL +KA+ + + G +VK G++ G + + +
Sbjct: 56 DVKEVRLSPSIESHDLSVKANNASKFLKNGDKVKVTMKFRGRELANTTKGQTIIKQFASI 115
Query: 222 IEDISVVESGPHVERKQAYAII 243
+E++S VE P +E KQ I+
Sbjct: 116 LEEVSTVEKEPKLEGKQLIMIL 137
>gi|325856667|ref|ZP_08172305.1| translation initiation factor IF-3 [Prevotella denticola CRIS
18C-A]
gi|327313433|ref|YP_004328870.1| translation initiation factor IF-3 [Prevotella denticola F0289]
gi|325483381|gb|EGC86356.1| translation initiation factor IF-3 [Prevotella denticola CRIS
18C-A]
gi|326945632|gb|AEA21517.1| translation initiation factor IF-3 [Prevotella denticola F0289]
Length = 226
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 22/186 (11%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK--- 138
R+N++I + VR+V D G +V+ +AL LA DLVE+ A PPVC+I+D+ K
Sbjct: 11 RVNEQIRVREVRVVSDNGAEVMPTRKALDLAHKEGVDLVEISPNAQPPVCRIIDYSKFLY 70
Query: 139 --EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
+K+QKELK+K K + KE+RF + ++ D K + ++ G +V+
Sbjct: 71 QQKKHQKELKQKQV----------KQEVKEIRFGPQTDEHDYNFKLKHAQEFLNAGNKVR 120
Query: 197 CMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
G+ KE+ E L L R + +E+++ VE P +E K+ + + K G +K
Sbjct: 121 AYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYLAPKKAGVAK 177
Query: 253 KGGLKK 258
K K+
Sbjct: 178 KSQQKR 183
>gi|255019924|ref|ZP_05291998.1| Translation initiation factor 3 [Acidithiobacillus caldus ATCC
51756]
gi|340783296|ref|YP_004749903.1| translation initiation factor 3 [Acidithiobacillus caldus SM-1]
gi|254970583|gb|EET28071.1| Translation initiation factor 3 [Acidithiobacillus caldus ATCC
51756]
gi|340557447|gb|AEK59201.1| Translation initiation factor 3 [Acidithiobacillus caldus SM-1]
Length = 145
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+VS EALA A S DLVE+ +ANPPVC+IMD+ K ++Q E K + A+ K K+
Sbjct: 3 IVSLFEALAAAESADLDLVEIAPQANPPVCRIMDYGKYRFQ-ESKRQHEARRKQ----KQ 57
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE++F + + D Q+K + R ++ G RVK G++ +LG L+R+
Sbjct: 58 SQVKEIKFRPRTDDADYQIKLRNIVRFLEDGDRVKITLRFRGREMTHPELGMEVLNRVEK 117
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ ++ VVE P +E +Q +I
Sbjct: 118 DLLEMGVVEQRPRMEGRQMVMVI 140
>gi|390939266|ref|YP_006403003.1| translation initiation factor 3 (bIF-3) [Sulfurospirillum barnesii
SES-3]
gi|390192373|gb|AFL67428.1| bacterial translation initiation factor 3 (bIF-3) [Sulfurospirillum
barnesii SES-3]
Length = 171
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++I A VR + D+G + +++R+EALA A L DLV + A PPVCKIM++ K K
Sbjct: 9 LNEEIRAVEVRCMGDDGTQYGIITRNEALAKADELGLDLVLIAPDAKPPVCKIMNYGKFK 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K K+ K + I + KE++ S KI D+ K + + +G V+
Sbjct: 69 YQQEKKLKEARKNQKIIEI-----KEIKLSVKIASNDVNYKIKHAREFLLEGKHVRFRVF 123
Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVE 235
G++ + G + L L ++EDI+ E P +E
Sbjct: 124 LRGREMANPEAGEHVLESLWPMLEDIAEREKTPKLE 159
>gi|323702722|ref|ZP_08114383.1| translation initiation factor IF-3 [Desulfotomaculum nigrificans
DSM 574]
gi|323532385|gb|EGB22263.1| translation initiation factor IF-3 [Desulfotomaculum nigrificans
DSM 574]
Length = 145
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 103 VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKG 162
+S +AL +A Q DLVEV +A PPVC+IMDF K KY++ +EK+ K + I +
Sbjct: 1 MSVRDALRIAEERQLDLVEVAPQAKPPVCRIMDFGKFKYEQSKREKEAKKKQRIIQV--- 57
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDL 221
KEV+ +IE+ D Q+K +R + G +VK + G++ +LG L++L +
Sbjct: 58 --KEVKLRPRIEEHDYQVKVKHAERFLKDGDKVKATIMFRGREIVHTELGQNLLNKLAED 115
Query: 222 IEDISVVESGPHVERKQAYAII 243
++D+ VE P +E K I+
Sbjct: 116 LKDLCTVERQPKLEGKNMIMIL 137
>gi|62290957|ref|YP_222750.1| translation initiation factor IF-3 [Brucella abortus bv. 1 str.
9-941]
gi|61226333|sp|P0A3K8.1|IF3_BRUME RecName: Full=Translation initiation factor IF-3
gi|61226334|sp|P0A3K9.1|IF3_BRUSU RecName: Full=Translation initiation factor IF-3
gi|61226336|sp|P0A3L0.1|IF3_BRUAB RecName: Full=Translation initiation factor IF-3
gi|7105706|gb|AAF05835.2|AF196569_1 translation initiation factor 3 [Brucella abortus]
gi|62197089|gb|AAX75389.1| InfC, translation initiation factor IF-3 [Brucella abortus bv. 1
str. 9-941]
Length = 178
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 62 FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDL 119
F A PVQ GPR N I V+L+ EG H VS EA+A+A DL
Sbjct: 5 FRATPVQ---------KDGPRSNRDIRVPRVQLIDAEGQNHGDVSIQEAMAMAEEAGLDL 55
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
VE+ A PPVCKI+D K KYQ + K + K + + + KE++ I+ D +
Sbjct: 56 VEIVPNAEPPVCKIVDLGKLKYQNQKKAAEARKKQKTV-----EIKEIKMRPNIDTHDYE 110
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
+K +R ++G +VK G++ ++LG L R+ + +I+ VES P +E +Q
Sbjct: 111 VKMKAAQRFFEEGDKVKVTLRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQ 170
Query: 239 AYAII 243
++
Sbjct: 171 MMMVL 175
>gi|402828920|ref|ZP_10877802.1| translation initiation factor IF-3 [Slackia sp. CM382]
gi|402285242|gb|EJU33731.1| translation initiation factor IF-3 [Slackia sp. CM382]
Length = 176
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+ S EAL +A + DLVE+ ANPPVC+IMD+ K KY + ++ K K ++ +
Sbjct: 16 IFSTREALRIAETEGLDLVEIAPNANPPVCRIMDYGKFKYDQAIRAKQARKNQTKV---- 71
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KE++F KI+ D K V R + G +VK + G++ + G L RL D
Sbjct: 72 -EIKEMKFRPKIDIGDYTTKKKHVLRFLADGAKVKITIMFRGREMAHPEQGLSILERLAD 130
Query: 221 LIEDISVVESGPHVERKQAYAII 243
++D++V+ES P +E + + +I
Sbjct: 131 DLKDVAVIESAPKMEGRNMHMMI 153
>gi|203284111|ref|YP_002221851.1| translation initiation factor IF-3 [Borrelia duttonii Ly]
gi|203287649|ref|YP_002222664.1| translation initiation factor IF-3 [Borrelia recurrentis A1]
gi|238690554|sp|B5RL16.1|IF3_BORDL RecName: Full=Translation initiation factor IF-3
gi|238690585|sp|B5RR09.1|IF3_BORRA RecName: Full=Translation initiation factor IF-3
gi|201083554|gb|ACH93145.1| translation initiation factor IF-3 [Borrelia duttonii Ly]
gi|201084869|gb|ACH94443.1| translation initiation factor IF-3 [Borrelia recurrentis A1]
Length = 186
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N +I A+ VR++ ++G V+ +A+ AR ++ DLVE+ A PPVCKI+D+ K K
Sbjct: 21 RINHRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLVEISPNALPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K + + +G +VK
Sbjct: 81 FHQEKRQKEQRKNQKIIKL-----KEVRMQPKIDTHDLDFKYKNILGFLKEGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L +++ + D + V+ES +E K + II
Sbjct: 136 FRGRELAHTHLGYGILESILERVGDSNYVLESPAKMEGKTMFLII 180
>gi|168061315|ref|XP_001782635.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665868|gb|EDQ52538.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 315
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPV 130
K+ ++ GP LN I VRL+ +E + V V EA AR DLV + A+PPV
Sbjct: 97 KEPQDEGGPLLNGDIRVPSVRLLDEEQNMVGVVPTAEAQLRARDADLDLVMIAPDADPPV 156
Query: 131 CKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMD 190
C+IMD+ K +Y+ + K+++ A+ + D KE++ I+ D Q++ + + +
Sbjct: 157 CRIMDYSKYRYEAQKKKRE---AQKKAIASRQDLKELKMRYNIDTHDYQVRLRSAMKFLK 213
Query: 191 KGYRVKCMALPVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAIIRHVKFG 249
G +VK + G++ + +DL L + ID I ++ VVES +E +Q ++ G
Sbjct: 214 DGDKVKVVCQFKGREMDFKDLAFKLFQKFIDDIGELGVVESKMAIEGRQMIMLL-----G 268
Query: 250 PSK 252
P+K
Sbjct: 269 PNK 271
>gi|116050733|ref|YP_790446.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218891077|ref|YP_002439943.1| translation initiation factor IF-3 [Pseudomonas aeruginosa LESB58]
gi|254235721|ref|ZP_04929044.1| translation initiation factor IF-3 [Pseudomonas aeruginosa C3719]
gi|296388794|ref|ZP_06878269.1| translation initiation factor IF-3 [Pseudomonas aeruginosa PAb1]
gi|355641739|ref|ZP_09052439.1| translation initiation factor IF-3 [Pseudomonas sp. 2_1_26]
gi|392983560|ref|YP_006482147.1| translation initiation factor IF-3 [Pseudomonas aeruginosa DK2]
gi|416855287|ref|ZP_11911422.1| translation initiation factor IF-3 [Pseudomonas aeruginosa 138244]
gi|416872790|ref|ZP_11916954.1| translation initiation factor IF-3 [Pseudomonas aeruginosa 152504]
gi|418587407|ref|ZP_13151438.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
MPAO1/P1]
gi|418589298|ref|ZP_13153223.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
MPAO1/P2]
gi|419752994|ref|ZP_14279398.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
PADK2_CF510]
gi|421517256|ref|ZP_15963930.1| translation initiation factor IF-3 [Pseudomonas aeruginosa PAO579]
gi|115585954|gb|ABJ11969.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126167652|gb|EAZ53163.1| translation initiation factor IF-3 [Pseudomonas aeruginosa C3719]
gi|218771302|emb|CAW27067.1| translation initiation factor IF-3 [Pseudomonas aeruginosa LESB58]
gi|334843073|gb|EGM21668.1| translation initiation factor IF-3 [Pseudomonas aeruginosa 138244]
gi|334845518|gb|EGM24079.1| translation initiation factor IF-3 [Pseudomonas aeruginosa 152504]
gi|354830616|gb|EHF14654.1| translation initiation factor IF-3 [Pseudomonas sp. 2_1_26]
gi|375041931|gb|EHS34603.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
MPAO1/P1]
gi|375051835|gb|EHS44299.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
MPAO1/P2]
gi|384400116|gb|EIE46475.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392319065|gb|AFM64445.1| translation initiation factor IF-3 [Pseudomonas aeruginosa DK2]
gi|404346738|gb|EJZ73087.1| translation initiation factor IF-3 [Pseudomonas aeruginosa PAO579]
gi|453045509|gb|EME93228.1| translation initiation factor IF-3 [Pseudomonas aeruginosa
PA21_ST175]
Length = 177
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 15/186 (8%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ P +N+ I+A+ VRL+ +G +V VS EA+ LA + DLVE+ A PP
Sbjct: 2 RQDKRAQPKPPINENISAREVRLIGADGQQVGVVSIDEAIRLAEEAKLDLVEISADAVPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KE++F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQAAVAKKNQKQAQVKEIKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAIIRHVK 247
+G + K G++ ++LG L + + DL+E VE P +E +Q +I
Sbjct: 117 SEGDKAKVSLRFRGREMAHQELGMELLKRVEADLVE-YGTVEQHPKLEGRQLMMVI---- 171
Query: 248 FGPSKK 253
P KK
Sbjct: 172 -APKKK 176
>gi|213966331|ref|ZP_03394513.1| translation initiation factor IF-3 [Corynebacterium amycolatum
SK46]
gi|213951037|gb|EEB62437.1| translation initiation factor IF-3 [Corynebacterium amycolatum
SK46]
Length = 183
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ I VRLV G +V V +AL LA DLVEV +A PPV KIMD+ K
Sbjct: 15 RINEDIRVPEVRLVGPNGEQVGVVRTGDALKLAYEADLDLVEVAPRAKPPVAKIMDYGKF 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K ++ K + KE +F KI+ D + K + V R ++KG +VK
Sbjct: 75 KYEQAQKAREARKNQQQTV-----VKEQKFRPKIDDHDYETKKNNVVRFLEKGSKVKVTI 129
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL +E+ VES P
Sbjct: 130 MFRGREQSRPELGFRLLERLAADVEEYGTVESRP 163
>gi|116873222|ref|YP_850003.1| translation initiation factor IF-3 [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|217964067|ref|YP_002349745.1| translation initiation factor IF-3 [Listeria monocytogenes HCC23]
gi|254826389|ref|ZP_05231390.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
J1-194]
gi|254829585|ref|ZP_05234272.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
N3-165]
gi|254854526|ref|ZP_05243874.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
R2-503]
gi|254933634|ref|ZP_05266993.1| translation initiation factor IF-3 [Listeria monocytogenes HPB2262]
gi|254938393|ref|ZP_05270090.1| translation initiation factor IF-3 [Listeria monocytogenes F6900]
gi|254993708|ref|ZP_05275898.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
J2-064]
gi|255028319|ref|ZP_05300270.1| translation initiation factor IF-3 [Listeria monocytogenes LO28]
gi|255521083|ref|ZP_05388320.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
J1-175]
gi|290893087|ref|ZP_06556076.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
J2-071]
gi|300766431|ref|ZP_07076386.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
N1-017]
gi|386008555|ref|YP_005926833.1| translation initiation factor IF-3 [Listeria monocytogenes L99]
gi|386027160|ref|YP_005947936.1| translation initiation factor IF3 [Listeria monocytogenes M7]
gi|386044093|ref|YP_005962898.1| translation initiation factor IF-3 [Listeria monocytogenes 10403S]
gi|386047437|ref|YP_005965769.1| translation initiation factor IF-3 [Listeria monocytogenes J0161]
gi|386050762|ref|YP_005968753.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
R2-561]
gi|386732524|ref|YP_006206020.1| translation initiation factor IF-3 [Listeria monocytogenes
07PF0776]
gi|404284281|ref|YP_006685178.1| translation initiation factor IF-3 [Listeria monocytogenes
SLCC2372]
gi|404413863|ref|YP_006699450.1| translation initiation factor IF-3 [Listeria monocytogenes
SLCC7179]
gi|405750135|ref|YP_006673601.1| translation initiation factor IF-3 [Listeria monocytogenes ATCC
19117]
gi|405753010|ref|YP_006676475.1| translation initiation factor IF-3 [Listeria monocytogenes
SLCC2378]
gi|405758836|ref|YP_006688112.1| translation initiation factor IF-3 [Listeria monocytogenes
SLCC2479]
gi|406704567|ref|YP_006754921.1| translation initiation factor IF-3 [Listeria monocytogenes L312]
gi|417317889|ref|ZP_12104492.1| translation initiation factor IF-3 [Listeria monocytogenes J1-220]
gi|422410029|ref|ZP_16486990.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
F2-208]
gi|422809867|ref|ZP_16858278.1| Translation initiation factor 3 [Listeria monocytogenes FSL J1-208]
gi|423100918|ref|ZP_17088623.1| translation initiation factor IF-3 [Listeria innocua ATCC 33091]
gi|424823545|ref|ZP_18248558.1| Translation initiation factor IF-3 [Listeria monocytogenes str.
Scott A]
gi|116742100|emb|CAK21224.1| translation initiation factor IF-3 [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|217333337|gb|ACK39131.1| translation initiation factor IF-3 [Listeria monocytogenes HCC23]
gi|258602002|gb|EEW15327.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
N3-165]
gi|258607926|gb|EEW20534.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
R2-503]
gi|258611005|gb|EEW23613.1| translation initiation factor IF-3 [Listeria monocytogenes F6900]
gi|290557447|gb|EFD90972.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
J2-071]
gi|293585197|gb|EFF97229.1| translation initiation factor IF-3 [Listeria monocytogenes HPB2262]
gi|293595629|gb|EFG03390.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
J1-194]
gi|300512855|gb|EFK39947.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
N1-017]
gi|307571365|emb|CAR84544.1| translation initiation factor IF-3 [Listeria monocytogenes L99]
gi|313608207|gb|EFR84232.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
F2-208]
gi|328473852|gb|EGF44682.1| translation initiation factor IF-3 [Listeria monocytogenes J1-220]
gi|332312225|gb|EGJ25320.1| Translation initiation factor IF-3 [Listeria monocytogenes str.
Scott A]
gi|336023741|gb|AEH92878.1| translation initiation factor IF3 [Listeria monocytogenes M7]
gi|345534428|gb|AEO03869.1| translation initiation factor IF-3 [Listeria monocytogenes J0161]
gi|345537327|gb|AEO06767.1| translation initiation factor IF-3 [Listeria monocytogenes 10403S]
gi|346424608|gb|AEO26133.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
R2-561]
gi|370792560|gb|EHN60424.1| translation initiation factor IF-3 [Listeria innocua ATCC 33091]
gi|378752068|gb|EHY62655.1| Translation initiation factor 3 [Listeria monocytogenes FSL J1-208]
gi|384391282|gb|AFH80352.1| translation initiation factor IF-3 [Listeria monocytogenes
07PF0776]
gi|404219335|emb|CBY70699.1| translation initiation factor IF-3 [Listeria monocytogenes ATCC
19117]
gi|404222210|emb|CBY73573.1| translation initiation factor IF-3 [Listeria monocytogenes
SLCC2378]
gi|404233783|emb|CBY55186.1| translation initiation factor IF-3 [Listeria monocytogenes
SLCC2372]
gi|404236718|emb|CBY58120.1| translation initiation factor IF-3 [Listeria monocytogenes
SLCC2479]
gi|404239562|emb|CBY60963.1| translation initiation factor IF-3 [Listeria monocytogenes
SLCC7179]
gi|406361597|emb|CBY67870.1| translation initiation factor IF-3 [Listeria monocytogenes L312]
Length = 167
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ +G + V S+ +AL +A DLV V A PPV +IMD+ K +
Sbjct: 3 VNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+K+ K + I + KEVR S I++ D K ++ ++KG +VKC
Sbjct: 63 FEQQKKDKEARKNQKVIVM-----KEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R ED+ +E P ++ + + ++
Sbjct: 118 FKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFLVL 161
>gi|308176900|ref|YP_003916306.1| translation initiation factor IF-3 [Arthrobacter arilaitensis
Re117]
gi|307744363|emb|CBT75335.1| translation initiation factor IF-3 [Arthrobacter arilaitensis
Re117]
Length = 216
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV G +V V +AL LA DLVEV A PPVCK+MDF K KY+ +K ++
Sbjct: 4 VRLVGPNGEQVGIVRIEDALRLALESDLDLVEVAPSAKPPVCKLMDFGKYKYEAAVKARE 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K +++ L KEVRF KI+ D + K R + G +VK M G++++
Sbjct: 64 ARKNQTNTVL-----KEVRFRLKIDTHDYETKVGHALRFLGAGDKVKAMIQFRGREQQRP 118
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++G L + + ++ ++ES P ++ + ++
Sbjct: 119 EMGIRLLEKFAADVAEVGIIESSPRIDGRNMVMVV 153
>gi|304382818|ref|ZP_07365301.1| translation initiation factor IF3 [Prevotella marshii DSM 16973]
gi|304336003|gb|EFM02250.1| translation initiation factor IF3 [Prevotella marshii DSM 16973]
Length = 227
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K+++ T+ R+N++I+ + VR+V ++G VV +AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDRMTNQYRVNEQIHVREVRIVGEDGSTVVPTRQALDMARQQGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
I+D+ K YQ++ K K+ + + + KE+RF + + D K K ++ G
Sbjct: 62 IIDYSKFLYQQKKKAKELKAKQVKV-----EVKEIRFGPQTDDHDYNFKLKHAKEFLEDG 116
Query: 193 YRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+V+ G+ KE+ E L L R + +E+ VE P +E K+ + I K
Sbjct: 117 NKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYGKVEQMPRLEGKKMFLFIAPKKA 173
Query: 249 GPSKK 253
G +KK
Sbjct: 174 GVAKK 178
>gi|392530405|ref|ZP_10277542.1| translation initiation factor IF-3 [Carnobacterium maltaromaticum
ATCC 35586]
Length = 166
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ +RL+ +G + V ++ EAL +A + DLV V A PPV ++MD+ K +
Sbjct: 2 VNDGIRARELRLIGSDGEQLGVKTKSEALQIAEAANLDLVLVAPTAKPPVARVMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KE++ K + I + KEVR S I+ D K ++ ++KG +VK
Sbjct: 62 FEQQKKEREARKNQKII-----NVKEVRLSPTIDVNDFNTKLRNARKFLEKGDKVKASIR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L+RL D ED++ VES P ++ + + ++
Sbjct: 117 FKGRAITHKEIGHKVLTRLADETEDLATVESKPKMDGRSMFMLL 160
>gi|327402299|ref|YP_004343137.1| translation initiation factor 3 (bIF-3) [Fluviicola taffensis DSM
16823]
gi|327317807|gb|AEA42299.1| bacterial translation initiation factor 3 (bIF-3) [Fluviicola
taffensis DSM 16823]
Length = 181
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 82 RLNDKINAQFVRLVLD-EGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
++N KI A+ +RLV++ E +V++ AL LA DLVE+ A PPVCKIMD+ K
Sbjct: 18 KINAKITAREIRLVVEGEEPQVLTLSAALQLAEEQDMDLVEISPNAVPPVCKIMDYRKFL 77
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y ++ K+K+ +S + L KE+RF + D Q K ++ +++G +VK
Sbjct: 78 YNQKRKQKELKAKQSKVIL-----KEIRFGPNTDDHDFQFKLTHARKFLEEGSKVKAYVF 132
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D G L + + + D+ +E P +E K+ +I
Sbjct: 133 FRGRTIVFKDRGEILLLKFVQELADLGTLEQMPKLEGKRMIVMI 176
>gi|42527659|ref|NP_972757.1| translation initiation factor IF-3 [Treponema denticola ATCC 35405]
gi|41818487|gb|AAS12676.1| translation initiation factor IF-3 [Treponema denticola ATCC 35405]
Length = 175
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 10/164 (6%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E G R+ND+I + VRL+ G + +V EA+ +A DLVEV A PPVCKI+
Sbjct: 3 EVKGLRINDQIRVREVRLIGVNGEQAGIVPTIEAVKMAAEAGLDLVEVAPTAKPPVCKII 62
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K ++Q E K +D K + K+ +E+R KI DL+ K+ +K+ +D G +
Sbjct: 63 DYGKYRFQMEKKLRDSKKNQ-----KQQMMREIRMQPKIHDHDLEFKSSHIKKFLDGGDK 117
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLI--EDISVVESGPHVE 235
VK G++ +LG L+++++ + E+ +E P +E
Sbjct: 118 VKVTVRFWGRELAHTELGYEVLNKVLEKLGGEEACTLEKKPAME 161
>gi|257784327|ref|YP_003179544.1| translation initiation factor IF-3 [Atopobium parvulum DSM 20469]
gi|257472834|gb|ACV50953.1| translation initiation factor IF-3 [Atopobium parvulum DSM 20469]
Length = 193
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+N++I A+ RL+ +G ++ ++A+ AR DLVE+ A PPVCKI+D+
Sbjct: 9 GPRINEEITARTCRLIDADGSQLGLFGVNDAMKRAREHGLDLVEIAPNAEPPVCKILDYS 68
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY++ K K K + I + KE++F KI+ D + K V R + KG RVK
Sbjct: 69 KFKYEQARKAKAARKNQVKI-----EVKEMKFRPKIDVGDYETKKGHVLRFLKKGARVKI 123
Query: 198 MALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ + G L RL + ++ + +E P +E + + ++ +K
Sbjct: 124 TIMFRGREMAHPEQGRIVLDRLAEDLKPYATIEQKPLIEGRNMHMLVAPIK 174
>gi|297588370|ref|ZP_06947013.1| translation initiation factor IF3 [Finegoldia magna ATCC 53516]
gi|297573743|gb|EFH92464.1| translation initiation factor IF3 [Finegoldia magna ATCC 53516]
Length = 168
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ DEG + V+ EAL +A DLV V A PPVCKI+D+ K K
Sbjct: 2 INEEIRSSKVRLIDDEGEQIGVIPIKEALKMAEDKHLDLVNVAPNAKPPVCKILDYGKYK 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y KEK+ K + I + KE+R S IE+ DL++KA+ + + RVK
Sbjct: 62 YDALKKEKEAKKNQKVINV-----KEIRLSPNIEKHDLEVKANQASKFLSNENRVKVSVR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVE 235
G++ +DLG L + +L +D+ +E P +E
Sbjct: 117 FRGRELGHKDLGKEVLDKFYELTKDVGQIEKKPSME 152
>gi|220917091|ref|YP_002492395.1| translation initiation factor IF-3 [Anaeromyxobacter dehalogenans
2CP-1]
gi|254803480|sp|B8J830.1|IF3_ANAD2 RecName: Full=Translation initiation factor IF-3
gi|219954945|gb|ACL65329.1| translation initiation factor IF-3 [Anaeromyxobacter dehalogenans
2CP-1]
Length = 230
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR++ EG + V+ +ALA A+ L DLVEV A PPVCKIMD+ +
Sbjct: 18 RTNRRIKAREVRVIGAEGEQLGVLPIDQALARAQELGMDLVEVSPMAKPPVCKIMDYGRF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY ++ K+ + K + + L KEV+ + E+ D K V+ + + + +
Sbjct: 78 KYLEKKKQNEAKKKQVVVQL-----KEVKLRPRTEEHDYDTKIKKVRAFLGEANKARITV 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+I+ + D++V+ES P +E +Q + I+
Sbjct: 133 MFRGREMSHRELGQKVLQRVIEDLRDVAVIESAPRMEGRQMFMIL 177
>gi|197122309|ref|YP_002134260.1| translation initiation factor IF-3 [Anaeromyxobacter sp. K]
gi|238689844|sp|B4UAN5.1|IF3_ANASK RecName: Full=Translation initiation factor IF-3
gi|196172158|gb|ACG73131.1| translation initiation factor IF-3 [Anaeromyxobacter sp. K]
Length = 232
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR++ EG + V+ +ALA A+ L DLVEV A PPVCKIMD+ +
Sbjct: 18 RTNRRIKAREVRVIGAEGEQLGVLPIDQALARAQELGMDLVEVSPMAKPPVCKIMDYGRF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY ++ K+ + K + + L KEV+ + E+ D K V+ + + + +
Sbjct: 78 KYLEKKKQNEAKKKQVVVQL-----KEVKLRPRTEEHDYDTKIKKVRAFLGEANKARITV 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+I+ + D++V+ES P +E +Q + I+
Sbjct: 133 MFRGREMSHRELGQKVLQRVIEDLRDVAVIESAPRMEGRQMFMIL 177
>gi|169831542|ref|YP_001717524.1| translation initiation factor IF-3 [Candidatus Desulforudis
audaxviator MP104C]
gi|169638386|gb|ACA59892.1| translation initiation factor IF-3 [Candidatus Desulforudis
audaxviator MP104C]
Length = 187
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VR++ +G + ++ +AL LA DLVEV +A P VC+IMDF K
Sbjct: 21 RVNQEIRAREVRVIDSDGAQLGIMPLRDALRLAEEKGLDLVEVASQARPVVCRIMDFGKY 80
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ ++K+ K + IT+ KEV+ IE D Q KA R + G +VK
Sbjct: 81 KYEQSKRDKEARKKQRIITI-----KEVKLRPGIEDHDFQTKARNAVRFLKDGDKVKVTL 135
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ LG L +L + +E+++V+E P +E + I+
Sbjct: 136 VFRGREIVHPHLGQQLLKKLAEQVEELAVIERAPKLEGRNMIMIL 180
>gi|153933561|ref|YP_001385459.1| translation initiation factor IF-3 [Clostridium botulinum A str.
ATCC 19397]
gi|153934650|ref|YP_001388866.1| translation initiation factor IF-3 [Clostridium botulinum A str.
Hall]
gi|182701650|ref|ZP_02613878.2| translation initiation factor IF-3 [Clostridium botulinum NCTC
2916]
gi|226950567|ref|YP_002805658.1| translation initiation factor IF-3 [Clostridium botulinum A2 str.
Kyoto]
gi|421835390|ref|ZP_16270168.1| translation initiation factor IF-3 [Clostridium botulinum
CFSAN001627]
gi|152929605|gb|ABS35105.1| translation initiation factor IF-3 [Clostridium botulinum A str.
ATCC 19397]
gi|152930564|gb|ABS36063.1| translation initiation factor IF-3 [Clostridium botulinum A str.
Hall]
gi|182670018|gb|EDT81994.1| translation initiation factor IF-3 [Clostridium botulinum NCTC
2916]
gi|226843624|gb|ACO86290.1| translation initiation factor IF-3 [Clostridium botulinum A2 str.
Kyoto]
gi|409742983|gb|EKN42148.1| translation initiation factor IF-3 [Clostridium botulinum
CFSAN001627]
Length = 184
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM++ K
Sbjct: 21 MNEQIREREVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNYGKFL 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I + KEVR S IE D+++KA+ ++ ++ G +VK
Sbjct: 81 YEQTKKDKEAKKNQKVI-----NIKEVRLSPTIEAHDIEIKANNARKFLNAGNKVKVTVR 135
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L + +E++SV+E P +E + I+
Sbjct: 136 FRGREADYSFKGNKILKSFYEKVEELSVMEKAPKLEGRNMIMIL 179
>gi|389872249|ref|YP_006379668.1| translation initiation factor IF-3 [Advenella kashmirensis WT001]
gi|388537498|gb|AFK62686.1| translation initiation factor IF-3 [Advenella kashmirensis WT001]
Length = 200
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I VRL+ +G + +V EAL LA DLVE+ A PPVC+IMD+ K
Sbjct: 26 RINAEIRIPEVRLIGVDGEQLGIVKTVEALRLAEQEGVDLVEIAPNAEPPVCRIMDYGKF 85
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K + AKAK I KEV+F ++ D Q+K +KR ++ G + K
Sbjct: 86 KYQ-EQKRQQEAKAKQKII----QVKEVKFRPATDEGDYQVKLRNLKRFIEDGDKAKVTL 140
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ D + ++ VE+ P +E +Q ++
Sbjct: 141 RFRGREMAHQELGMRVLERVRDDMAELVQVEAMPKLEGRQMVMVL 185
>gi|319404957|emb|CBI78559.1| translation initiation factor IF-3 [Bartonella sp. AR 15-3]
Length = 164
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N I V+L+ DEG +V+ EAL++A DLVE+ A PPVCKI+D K
Sbjct: 2 RSNRDIRVPHVQLINDEGQHQGIVTTQEALSMAADAGLDLVEIVPNAEPPVCKIIDLGKL 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ + K + K + I + KE++ ++ D ++K ++R +D G +VK
Sbjct: 62 KYQNQKKAAETRKKQKTI-----EIKEIKMRPNVDIHDYEVKLKAIRRFIDNGDKVKITL 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ + +I+ +ES P E +Q +I
Sbjct: 117 RFRGREMAHQDLGIKLLQRVKENTSEIAKIESEPKFEGRQIMMVI 161
>gi|86158398|ref|YP_465183.1| translation initiation factor IF-3 [Anaeromyxobacter dehalogenans
2CP-C]
gi|123723044|sp|Q2IJB8.1|IF3_ANADE RecName: Full=Translation initiation factor IF-3
gi|85774909|gb|ABC81746.1| bacterial translation initiation factor 3 (bIF-3) [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 233
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR++ EG + V+ +ALA A+ L DLVEV A PPVCKIMD+ +
Sbjct: 18 RTNRRIKAREVRVIGAEGEQLGVLPIDQALARAQELGMDLVEVSPMAKPPVCKIMDYGRF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY ++ K+ + K + + L KEV+ + E+ D K V+ + + + +
Sbjct: 78 KYLEKKKQNEAKKKQVVVQL-----KEVKLRPRTEEHDYDTKIKKVREFLAEANKARITV 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+I+ + D++V+ES P +E +Q + I+
Sbjct: 133 MFRGREMSHRELGQKVLQRVIEDLRDVAVIESAPRMEGRQMFMIL 177
>gi|58582809|ref|YP_201825.1| translation initiation factor IF-3 [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|84624683|ref|YP_452055.1| translation initiation factor IF-3 [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188577598|ref|YP_001914527.1| translation initiation factor IF-3 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|384418826|ref|YP_005628186.1| translation initiation factor IF-3 [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|58427403|gb|AAW76440.1| initiation factor IF-3 [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84368623|dbj|BAE69781.1| initiation factor IF-3 [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188522050|gb|ACD59995.1| translation initiation factor IF-3 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|353461739|gb|AEQ96018.1| translation initiation factor IF-3 [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 159
Score = 76.3 bits (186), Expect = 3e-11, Method: Composition-based stats.
Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 15/166 (9%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VR++ +G V +SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ +
Sbjct: 4 VRVIGSDGEMVGVLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKAN 62
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK G++ +
Sbjct: 63 EAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQ 118
Query: 210 DLGGYLSRLI--DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG ++ I DL ++I V+ES P +E +Q +I P KK
Sbjct: 119 ELGREMAARIEADLGDEI-VIESRPRLEGRQMVMMI-----APKKK 158
>gi|320529199|ref|ZP_08030291.1| translation initiation factor IF-3 [Selenomonas artemidis F0399]
gi|320138829|gb|EFW30719.1| translation initiation factor IF-3 [Selenomonas artemidis F0399]
Length = 214
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VR+ G + ++ EAL +A DLVEV A PPVC+IMDF K
Sbjct: 28 RINEEIRIREVRVTGAAGEQLGIMPTIEALRMAEEQHLDLVEVAPNARPPVCRIMDFGKF 87
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 88 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 142
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + D+ +E G +E K I+
Sbjct: 143 MFRGRELSHPELGRVVLDRVSERMGDLVSIERGAKLEGKNMTMIL 187
>gi|297183124|gb|ADI19267.1| hypothetical protein [uncultured delta proteobacterium
HF0200_39L23]
Length = 173
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I+ VR+V EG + ++S EAL + DLVEV K+ PPVC++MDF K
Sbjct: 8 RVNDQIDVPEVRVVDGEGGQLGIMSIEEALEQSLEAGMDLVEVSPKSKPPVCRMMDFGKY 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ K+ + + I L KEV+ KIE+ D Q K R +++G +VK
Sbjct: 68 KYQQSKKQHAARQNQKTIHL-----KEVKMKPKIEEHDFQFKVRNTLRFLEEGDKVKVNI 122
Query: 200 LPVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAII 243
+ G+ +DLG L + + I + +VE E + + I+
Sbjct: 123 MFFGRMMAHKDLGLVLMEKFENAIGEAGIVEQPVRNEGRSMFMIM 167
>gi|302380600|ref|ZP_07269065.1| translation initiation factor IF-3 [Finegoldia magna
ACS-171-V-Col3]
gi|303233987|ref|ZP_07320636.1| translation initiation factor IF-3 [Finegoldia magna BVS033A4]
gi|302311543|gb|EFK93559.1| translation initiation factor IF-3 [Finegoldia magna
ACS-171-V-Col3]
gi|302494912|gb|EFL54669.1| translation initiation factor IF-3 [Finegoldia magna BVS033A4]
Length = 168
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ DEG + V+ EAL +A DLV V A PPVCKI+D+ K K
Sbjct: 2 INEEIRSSKVRLIDDEGEQIGVIPIKEALKMAEDKHLDLVNVAPNAKPPVCKILDYGKYK 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y KEK+ K + I + KE+R S IE+ DL++KA+ + + RVK
Sbjct: 62 YDALKKEKEAKKNQKVINV-----KEIRLSPNIEKHDLEVKANQASKFLSNENRVKVSVR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVE 235
G++ +DLG L + +L +D+ +E P +E
Sbjct: 117 FRGRELGHKDLGKEVLDKFYELTKDVGQIEKKPSME 152
>gi|89893013|ref|YP_516500.1| hypothetical protein DSY0267 [Desulfitobacterium hafniense Y51]
gi|423072079|ref|ZP_17060841.1| translation initiation factor IF-3 [Desulfitobacterium hafniense
DP7]
gi|89332461|dbj|BAE82056.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361857214|gb|EHL09063.1| translation initiation factor IF-3 [Desulfitobacterium hafniense
DP7]
Length = 191
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I A+ VRLV +EG + +V +A +A DLVE+ A PPVCKIMD+ K
Sbjct: 26 RINDEIRAREVRLVGEEGEQLGIVQLRDAQRIAAEKSLDLVEIAPTAKPPVCKIMDYGKY 85
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ ++K+ K + K + KEV+ IE D + KA +R ++ G +VK
Sbjct: 86 KYEQAKRDKEARKKQ-----KTMEIKEVKLRPNIEDHDFETKARNAQRFLNDGDKVKVTI 140
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ +LG L RL + + + +E P +E + I+ VK
Sbjct: 141 MFRGREVTHPELGRTLCLRLAEFCKAEANIERDPKLEGRNMIMILAPVK 189
>gi|449127817|ref|ZP_21764087.1| translation initiation factor IF-3 [Treponema denticola SP33]
gi|448943149|gb|EMB24041.1| translation initiation factor IF-3 [Treponema denticola SP33]
Length = 194
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 62 FFAAPV-QAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCD 118
++ AP+ + + E G R+ND+I + VRL+ G + +V EA+ +A D
Sbjct: 6 YYIAPIGNGAEGESLAEVKGLRINDQIRVREVRLIGVNGEQAGIVPTIEAVKMAAEAGLD 65
Query: 119 LVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDL 178
LVEV A PPVCKI+D+ K ++Q E K +D K + K+ +E+R KI DL
Sbjct: 66 LVEVAPTAKPPVCKIIDYGKYRFQMEKKLRDSKKNQ-----KQQMMREIRMQPKIHDHDL 120
Query: 179 QMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLI--EDISVVESGPHVE 235
+ K+ +K+ +D G +VK G++ +LG L+++++ + E+ +E P +E
Sbjct: 121 EFKSAHIKKFLDGGDKVKVTVRFWGRELAHTELGYEVLNKVLEKLGGEEACTLEKKPAME 180
>gi|257456996|ref|ZP_05622177.1| translation initiation factor IF-3 [Treponema vincentii ATCC 35580]
gi|257445705|gb|EEV20767.1| translation initiation factor IF-3 [Treponema vincentii ATCC 35580]
Length = 173
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E G R+N++I + VRL+ D G + +VS EAL +A+ + DLVEV +A+PPVCKI+
Sbjct: 3 ENKGLRINEQIRVREVRLIDDAGEQKGIVSTLEALRMAQDVNLDLVEVAPQADPPVCKIL 62
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K +++ E K +D S K KE+R KI DL KA ++ +D G +
Sbjct: 63 DYGKYRFELEKKLRD-----SKKKQKLQVLKEIRMQPKINDHDLSFKARHIQDFLDGGDK 117
Query: 195 VKCMALPVGKKEETEDLG 212
VK G++ +LG
Sbjct: 118 VKVTIRFRGRELAHTELG 135
>gi|386719319|ref|YP_006185645.1| translation initiation factor 3 [Stenotrophomonas maltophilia D457]
gi|408824995|ref|ZP_11209885.1| translation initiation factor IF-3 [Pseudomonas geniculata N1]
gi|384078881|emb|CCH13475.1| Translation initiation factor 3 [Stenotrophomonas maltophilia D457]
Length = 159
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 10/156 (6%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VR++ +G V+SR EAL++A DLVE+ +A+PPVCKIMDF K K++ + K+
Sbjct: 4 VRVIGSDGEMIGVLSRDEALSMAEDEGLDLVEIQPQADPPVCKIMDFGKFKFEAQ-KKAS 62
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ K+ + KEV+F ++ D Q+K ++ +++G ++K G++ +
Sbjct: 63 EAKKKT----KQVEIKEVKFRPVTDEGDYQIKLRKMRGFLEEGDKIKVNIRFRGREMSHQ 118
Query: 210 DLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
+LG ++ I DL EDI V+ES P +E +Q +I
Sbjct: 119 ELGREMANRIETDLGEDI-VIESRPRLEGRQMVMMI 153
>gi|330443795|ref|YP_004376781.1| translation initiation factor IF-3 [Chlamydophila pecorum E58]
gi|328806905|gb|AEB41078.1| translation initiation factor IF-3 [Chlamydophila pecorum E58]
Length = 175
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N +I AQ VRL+ EG + +V EAL LAR DLVEV + PPVCK+MD+ K
Sbjct: 6 KINRQIRAQQVRLISAEGEQLGIVGIKEALDLAREAGLDLVEVSSNSTPPVCKVMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I++ D K + ++KG +VK
Sbjct: 66 RYDITKKEKDSKKAQHQVRV-----KEVKLKPNIDENDFLTKLKQARGFIEKGNKVKITC 120
Query: 200 LPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHV 234
G++ + G + + I +ED+ VE+ P +
Sbjct: 121 TFRGRELAYPEHGLRVIKKISQGLEDVGFVEAEPKL 156
>gi|294792090|ref|ZP_06757238.1| translation initiation factor IF-3 [Veillonella sp. 6_1_27]
gi|294457320|gb|EFG25682.1| translation initiation factor IF-3 [Veillonella sp. 6_1_27]
Length = 172
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ +R+V E ++ +S EALALA DLVE+ A PPV +IM++ K
Sbjct: 9 PRINEEIRARELRVVGPENEQIGIMSGREALALAEEQHLDLVEIAPNAKPPVARIMNYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + +TL KEV+ IE D +K + + +G +VK
Sbjct: 69 YRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIEDHDFYVKMKNASKFLAEGNKVKVT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R D +++ + +E +E + I+
Sbjct: 124 IMFRGRELSHPELGMAVLTRFADELKETASIEKAAKLEGRNMTMIL 169
>gi|119716685|ref|YP_923650.1| translation initiation factor 3 [Nocardioides sp. JS614]
gi|119537346|gb|ABL81963.1| bacterial translation initiation factor 3 (bIF-3) [Nocardioides sp.
JS614]
Length = 243
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G V V +AL LA+ DLVE+ + PPVCK+MD+ K
Sbjct: 22 RINERIRVPEVRLVGPNGETVGIVPTDQALKLAQEADLDLVEIAPQGKPPVCKLMDYGKF 81
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ + ++++ + KE++ KI+ D + K V R + G +VK
Sbjct: 82 KYENAQKAREARRNQTNVII-----KEMKLRPKIDAHDYETKKGHVVRFLRAGDKVKITI 136
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ G+++ +LG L RL + + ++ VES P + + ++ GP KK
Sbjct: 137 MFRGREQHRPELGFRLLQRLAEDVTELGFVESAPKQDGRNMIMVL-----GPHKK 186
>gi|438001655|ref|YP_007271398.1| Translation initiation factor 3 [Tepidanaerobacter acetatoxydans
Re1]
gi|432178449|emb|CCP25422.1| Translation initiation factor 3 [Tepidanaerobacter acetatoxydans
Re1]
Length = 168
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N +I + VR++ +G + ++S +AL A+ +Q DLV++ A PPVCKIMDF K K
Sbjct: 1 MNHEIRDREVRVISPDGKQLGIMSLKDALHYAQEVQLDLVKISSDAKPPVCKIMDFGKYK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ +EK+ A+ K+ + + KE+R + I++ D Q++ + + G +VK
Sbjct: 61 YEQSKREKE-ARKKAKVI----NVKEIRMNPTIDEHDFQVRLKNTIKFLKDGDKVKVSIR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ LG L+R+++ I ++ VVE P +E + +I
Sbjct: 116 FRGRQMTHTKLGEEVLNRVVENISEVGVVEKPPKMEGRNMVMVI 159
>gi|375085936|ref|ZP_09732555.1| translation initiation factor IF-3 [Megamonas funiformis YIT 11815]
gi|374566157|gb|EHR37407.1| translation initiation factor IF-3 [Megamonas funiformis YIT 11815]
Length = 184
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VR+ +G + ++S +AL A DLVEV KA PPVC+IMDF K
Sbjct: 10 RINGEIRAREVRVTDAQGEQLGIMSTRDALRKAEEAHLDLVEVAPKAKPPVCRIMDFGKY 69
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ IE D K R + +G +VK
Sbjct: 70 RYEQQKREKEAKKKQKVISV-----KEVKLRPGIETHDFNFKVKNAMRFIAEGNKVKATI 124
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ ++G L ++ + ++D VE P +E K I+
Sbjct: 125 MFRGRELSHPEMGKELLLKVAEAMQDAVTVEREPKLEGKNMIMIL 169
>gi|241764279|ref|ZP_04762309.1| translation initiation factor IF-3 [Acidovorax delafieldii 2AN]
gi|241366348|gb|EER60878.1| translation initiation factor IF-3 [Acidovorax delafieldii 2AN]
Length = 177
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS EAL +A L DLVE+ ANPPVC++MD+ K KYQ E K AKAK +
Sbjct: 17 VVSLMEALRMAGELDVDLVEIAATANPPVCRLMDYGKFKYQ-EQKRAAEAKAKQTVI--- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KEV+F + D +K ++R + G + K G++ ++LG L+R+ D
Sbjct: 73 -EIKEVKFRPGTDDGDYNIKMRNIRRFLADGDKCKITLRFRGREITHQELGLALLNRIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ D ++E P +E +Q +I
Sbjct: 132 ELADSIIIEQFPKLEGRQMIMMI 154
>gi|320159658|ref|YP_004172882.1| translation initiation factor IF-3 [Anaerolinea thermophila UNI-1]
gi|319993511|dbj|BAJ62282.1| translation initiation factor IF-3 [Anaerolinea thermophila UNI-1]
Length = 215
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 93/188 (49%), Gaps = 10/188 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ I VRL+ G VV EAL +AR + DLVEV A PPVC++MDF K
Sbjct: 24 RVNEMIRVPEVRLIGPGGENLGVVPIQEALRIARDAELDLVEVAPGATPPVCRVMDFGKF 83
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y++ KE++ KA++ I + KE+R K + K +R + +G +VK
Sbjct: 84 LYERAKKEREAKKAQTRI-----EVKEIRLRPKTNEHHRGFKTRDARRWLLEGNKVKVTV 138
Query: 200 LPVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKK 258
G++ +L L + + + DI+ +E P +E K ++ K P KK G +
Sbjct: 139 RFRGREITYPELALEDLREIAEELSDIATIEQAPVLEGKVMTMVLSPAK--PGKKKGESQ 196
Query: 259 LKAVGDTS 266
KA TS
Sbjct: 197 PKAASSTS 204
>gi|340359801|ref|ZP_08682274.1| translation initiation factor IF3 [Actinomyces sp. oral taxon 448
str. F0400]
gi|339884091|gb|EGQ73913.1| translation initiation factor IF3 [Actinomyces sp. oral taxon 448
str. F0400]
Length = 200
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRVEDALRLAEEAGLDLVEVAPDARPPVCKLMDYGKFKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI+Q D K V+R + G +VKC+ G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDQHDYATKMGHVERFLKGGDKVKCIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L R+ + + ++ VES P
Sbjct: 116 ELGIRLLRRVAEEVSELGNVESHP 139
>gi|187776941|ref|ZP_02993414.1| hypothetical protein CLOSPO_00485 [Clostridium sporogenes ATCC
15579]
gi|187775600|gb|EDU39402.1| translation initiation factor IF-3 [Clostridium sporogenes ATCC
15579]
Length = 164
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM++ K
Sbjct: 1 MNEQIREKEVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNYGKFL 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I + KEVR S IE D+++KA+ ++ ++ G +VK
Sbjct: 61 YEQTKKDKEAKKNQKVINI-----KEVRLSPTIEAHDIEIKANNARKFLNAGNKVKVTVR 115
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L + +E++ V+E P +E + I+
Sbjct: 116 FRGREADYSFKGNKILKSFYEKVEELGVMEKAPKLEGRNMIMIL 159
>gi|310830634|ref|YP_003965735.1| translation initiation factor IF-3 [Paenibacillus polymyxa SC2]
gi|309250101|gb|ADO59667.1| translation initiation factor IF-3 [Paenibacillus polymyxa SC2]
Length = 168
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I A+ VRL+ +G H + + +AL +A + DLV + A PPVCK++++ K
Sbjct: 4 QINEQITAKEVRLIGSDGKQHGIYNLADALLIAEEAKLDLVNISPAATPPVCKVVNYGKF 63
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y++ KEK+ K + + + KEVRFS +I++ D Q K+ V++ + G RVK
Sbjct: 64 LYEQNRKEKEIRKNQKIV-----ETKEVRFSARIDEHDFQTKSRNVQKFLKSGNRVKLSI 118
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G L RL +E E P +E +Q +
Sbjct: 119 QFKGREIAHSEIGLNILLRLAAEMEAFGSPERTPKLEGRQMIMFL 163
>gi|209523635|ref|ZP_03272189.1| translation initiation factor IF-3 [Arthrospira maxima CS-328]
gi|376004300|ref|ZP_09782025.1| translation initiation factor IF-3 [Arthrospira sp. PCC 8005]
gi|423065927|ref|ZP_17054717.1| translation initiation factor IF-3 [Arthrospira platensis C1]
gi|209496040|gb|EDZ96341.1| translation initiation factor IF-3 [Arthrospira maxima CS-328]
gi|375327319|emb|CCE17778.1| translation initiation factor IF-3 [Arthrospira sp. PCC 8005]
gi|406712685|gb|EKD07869.1| translation initiation factor IF-3 [Arthrospira platensis C1]
Length = 180
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++ND I +RL+ EG + +++ EA+ LA+ + DLV V KA+PPVC+IMD+ K
Sbjct: 13 PQINDNIRFPKIRLIDTEGGQLGIMTPREAMKLAQEKELDLVLVSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
KY++E K ++ K + D KEV+ KI+ D Q++ + KR + G +VK
Sbjct: 73 FKYEQEKKVREARKKQHT-----ADVKEVKMRYKIDDHDYQVRVNQAKRFLKSGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + +L L R+ +E+ + V+ P E + ++
Sbjct: 128 IMFRGREIQHSNLARELLKRMAVDLEEHAEVQQSPKQEGRSMMMLL 173
>gi|262091799|gb|ACY25387.1| bacterial translation initiation factor 3 [uncultured
actinobacterium]
Length = 177
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VV AL +A + DLVE+ ANPPVCKIMDF K KY+ K ++ + ++ I +
Sbjct: 11 VVDIDTALKMADEVGLDLVEIAPDANPPVCKIMDFGKYKYEVAQKAREARQNQTHIVV-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KEVR + KIE D + K V++ + G +VK G+++ +LG L RL +
Sbjct: 69 ---KEVRMTPKIENHDYETKRSQVEKFLKGGDKVKVTMKFRGREQTRPELGYKMLQRLAE 125
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
I ++ VE P E + ++ GP+KK
Sbjct: 126 DIAEVGFVEFAPKQEGRNMTMVL-----GPTKK 153
>gi|300767160|ref|ZP_07077072.1| translation initiation factor IF3 [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180380|ref|YP_003924508.1| translation initiation factor IF3 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|448821046|ref|YP_007414208.1| Translation initiation factor IF-3 [Lactobacillus plantarum ZJ316]
gi|300494979|gb|EFK30135.1| translation initiation factor IF3 [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308045871|gb|ADN98414.1| translation initiation factor IF3 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|448274543|gb|AGE39062.1| Translation initiation factor IF-3 [Lactobacillus plantarum ZJ316]
Length = 166
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ +G + V SR EA+ +A DLV V KA PPV +IMD+ K +
Sbjct: 2 VNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + +++ KEVR S I+ D K ++ + KG +V+
Sbjct: 62 FEQQKKDREARKKQKVVSI-----KEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L+R+I+ ++ S VE+ P ++ + + ++
Sbjct: 117 FKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVL 160
>gi|402302262|ref|ZP_10821380.1| translation initiation factor IF-3 [Selenomonas sp. FOBRC9]
gi|400380903|gb|EJP33710.1| translation initiation factor IF-3 [Selenomonas sp. FOBRC9]
Length = 214
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VR+ G + ++ EAL +A DLVEV A PPVC+IMDF K
Sbjct: 28 RINEEIRIREVRVTGAAGEQLGIMPTIEALRMAEEQHLDLVEVAPNARPPVCRIMDFGKF 87
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 88 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 142
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + D+ +E G +E K I+
Sbjct: 143 MFRGRELSHPELGRVVLDRVSERMGDLVSIERGAKLEGKNMTMIL 187
>gi|323137355|ref|ZP_08072433.1| translation initiation factor IF-3 [Methylocystis sp. ATCC 49242]
gi|322397342|gb|EFX99865.1| translation initiation factor IF-3 [Methylocystis sp. ATCC 49242]
Length = 175
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+N +I A+ V+L+ EG H VV +ALA+A S DLVE+ + PPVCKI+
Sbjct: 8 QKEGPRINREIRAREVQLIDSEGKNHGVVQLPDALAMADSAGLDLVEIAPNSTPPVCKIL 67
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ + ++ E K+ A+ K + + KE++ I++ D +K V+R ++G +
Sbjct: 68 DYGRFRFA-EQKKAAEARKKQKVV----EVKEIKLRPGIDEHDYDVKMKAVRRFFEEGDK 122
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +D+G L+R+ +++ VE P +E +Q ++
Sbjct: 123 VKVTLRFRGREIAHQDIGYRLLTRVKAETANLAKVELEPSMEGRQMVMVL 172
>gi|254556436|ref|YP_003062853.1| translation initiation factor IF-3 [Lactobacillus plantarum JDM1]
gi|380032364|ref|YP_004889355.1| translation initiation factor IF-3 [Lactobacillus plantarum WCFS1]
gi|418275040|ref|ZP_12890452.1| translation initiation factor IF-3 [Lactobacillus plantarum subsp.
plantarum NC8]
gi|38257838|sp|Q88WU8.1|IF3_LACPL RecName: Full=Translation initiation factor IF-3
gi|254045363|gb|ACT62156.1| translation initiation factor IF-3 [Lactobacillus plantarum JDM1]
gi|342241607|emb|CCC78841.1| translation initiation factor IF-3 [Lactobacillus plantarum WCFS1]
gi|376009511|gb|EHS82839.1| translation initiation factor IF-3 [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 173
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ +G + V SR EA+ +A DLV V KA PPV +IMD+ K +
Sbjct: 9 VNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + +++ KEVR S I+ D K ++ + KG +V+
Sbjct: 69 FEQQKKDREARKKQKVVSI-----KEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIR 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L+R+I+ ++ S VE+ P ++ + + ++
Sbjct: 124 FKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVL 167
>gi|303248735|ref|ZP_07334988.1| translation initiation factor IF-3 [Desulfovibrio fructosovorans
JJ]
gi|302489900|gb|EFL49828.1| translation initiation factor IF-3 [Desulfovibrio fructosovorans
JJ]
Length = 161
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 8/147 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+R++ D+G +V + EAL +A+ DLVEV A+PPVC+IMDF + KYQ++ K ++
Sbjct: 1 MRVIADDGAQVGIIPTSEALRMAQEKGLDLVEVAPNADPPVCRIMDFGRFKYQQQKKLQE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K S + L KE++ K ++ D Q K ++R +++G R K G++ +
Sbjct: 61 ARKKASTVQL-----KEIKVRPKTDEHDYQTKLKHIRRFLEEGDRCKVTVFFRGREIVHK 115
Query: 210 DLGGY-LSRLIDLIEDISVVESGPHVE 235
D G LSR++ + D++ VE P E
Sbjct: 116 DRGVLILSRVVADLGDLAKVEQEPRTE 142
>gi|284802229|ref|YP_003414094.1| translation initiation factor IF-3 [Listeria monocytogenes 08-5578]
gi|284995371|ref|YP_003417139.1| translation initiation factor IF-3 [Listeria monocytogenes 08-5923]
gi|284057791|gb|ADB68732.1| translation initiation factor IF-3 [Listeria monocytogenes 08-5578]
gi|284060838|gb|ADB71777.1| translation initiation factor IF-3 [Listeria monocytogenes 08-5923]
Length = 167
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ +G + V S+ +AL +A DLV V A PPV +IMD+ K +
Sbjct: 3 VNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+K+ K + I + KEVR S I++ D K ++ ++KG +VKC
Sbjct: 63 FEQQKKDKEARKNQKVIVM-----KEVRLSPTIDEHDFDTKLRKARKFLEKGDKVKCSIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R ED+ +E P ++ + + ++
Sbjct: 118 FKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFLVL 161
>gi|253998430|ref|YP_003050493.1| translation initiation factor IF-3 [Methylovorus glucosetrophus
SIP3-4]
gi|253985109|gb|ACT49966.1| translation initiation factor IF-3 [Methylovorus glucosetrophus
SIP3-4]
Length = 174
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N I AQ +RLV +G ++S +EA A A DLVE+ +A PPVC++MD+ K
Sbjct: 8 RINGDITAQQIRLVGVDGEPLGIMSLNEAFAKAEEADIDLVEIAPQAQPPVCRLMDYGKF 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY E K + A+ K K+ KEV+F ++ D Q+K ++ R + +G + K
Sbjct: 68 KY-AESKRQHEARLKQ----KQVQVKEVKFRPGTDEGDYQVKLRSLIRFLQEGDKAKITL 122
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ ++LG L R+ +++ +VVE P +E +Q ++ GP KK
Sbjct: 123 RFRGREITHQELGLALLKRVEADLQEHAVVEQFPKMEGRQMVMVL-----GPHKK 172
>gi|339502998|ref|YP_004690418.1| translation initiation factor IF-3 [Roseobacter litoralis Och 149]
gi|338756991|gb|AEI93455.1| translation initiation factor IF-3 [Roseobacter litoralis Och 149]
Length = 164
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI +RL+ EG V V+ A+ +A DLVE+ ANPPVCKIMDF K K
Sbjct: 1 MNEKIRGSDIRLIGAEGENVGVVTPERAMEMANDAGLDLVEISPNANPPVCKIMDFGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ +E + A+ K I + KEV+F + D +K V + ++ G +VK
Sbjct: 61 YEQQKRESE-ARKKQKII----EIKEVKFRPNTDTNDYDVKMRNVFKFLENGDKVKITLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + ++ VE+ P +E +Q +I
Sbjct: 116 FRGREMAHQNLGRELLERVAEDTKEAGRVENFPKMEGRQMVMLI 159
>gi|152987833|ref|YP_001347871.1| translation initiation factor IF-3 [Pseudomonas aeruginosa PA7]
gi|452876102|ref|ZP_21953464.1| translation initiation factor IF-3 [Pseudomonas aeruginosa VRFPA01]
gi|150962991|gb|ABR85016.1| translation initiation factor IF-3 [Pseudomonas aeruginosa PA7]
gi|452187049|gb|EME14067.1| translation initiation factor IF-3 [Pseudomonas aeruginosa VRFPA01]
Length = 177
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 15/186 (8%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ P +N+ I+A+ VRL+ +G +V VS EA+ LA + DLVE+ A PP
Sbjct: 2 RQDKRAQPKPPINENISAREVRLIGADGQQVGVVSIDEAIRLAEEAKLDLVEISADAVPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KE++F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQAAVAKKNQKQAQVKEIKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAIIRHVK 247
G + K G++ ++LG L + + DL+E VE P +E +Q +I
Sbjct: 117 SDGDKAKVSLRFRGREMAHQELGMELLKRVEADLVE-YGTVEQHPKLEGRQLMMVI---- 171
Query: 248 FGPSKK 253
P KK
Sbjct: 172 -APKKK 176
>gi|300691316|ref|YP_003752311.1| translation initiation factor IF-3 [Ralstonia solanacearum PSI07]
gi|299078376|emb|CBJ51026.1| Translation initiation factor IF-3 [Ralstonia solanacearum PSI07]
gi|344167565|emb|CCA79803.1| translation initiation factor IF-3 [blood disease bacterium R229]
gi|344174551|emb|CCA86349.1| translation initiation factor IF-3 [Ralstonia syzygii R24]
Length = 178
Score = 75.9 bits (185), Expect = 4e-11, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A +RL EG + +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 13 RINREITAPEIRLTGVEGEQLGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ AK K + KEV+F + D ++K +KR +D+G R K
Sbjct: 73 KYQ-EQKKAHEAKLKQKVI----QVKEVKFRPGTDDGDYEVKLRNLKRFLDEGDRTKITL 127
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
G++ +++G L RL +E+ VE P +E +Q
Sbjct: 128 RFRGREMAHQEIGVRMLDRLKADLEEFGQVEQMPKMEGRQ 167
>gi|443476689|ref|ZP_21066582.1| bacterial translation initiation factor 3 (bIF-3) [Pseudanabaena
biceps PCC 7429]
gi|443018321|gb|ELS32594.1| bacterial translation initiation factor 3 (bIF-3) [Pseudanabaena
biceps PCC 7429]
Length = 174
Score = 75.9 bits (185), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 91/158 (57%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ EG + +++ EAL +A + DLV V KA+PPVC+IMD+ K
Sbjct: 10 PQINERIRYPKIRVIDMEGEQLGILTPKEALKMAEEKELDLVLVSDKADPPVCRIMDYGK 69
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D +++ + +R + +G +VK
Sbjct: 70 FKFEQEKKAREARKKQ-----HTSDVKEVKMRYKIEEHDYKVRINHAERFLKEGDKVKAT 124
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVE 235
+ G++ + DL L+R+ +E ++ ++ P E
Sbjct: 125 VMFRGREIQHVDLAEVLLNRMASDLESVAEIQQYPKRE 162
>gi|118497780|ref|YP_898830.1| translation initiation factor IF-3 [Francisella novicida U112]
gi|134301673|ref|YP_001121641.1| translation initiation factor IF-3 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|254374590|ref|ZP_04990071.1| hypothetical protein FTDG_00764 [Francisella novicida GA99-3548]
gi|254874734|ref|ZP_05247444.1| translation initiation factor IF-3 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|118423686|gb|ABK90076.1| translation initiation factor IF-3 [Francisella novicida U112]
gi|134049450|gb|ABO46521.1| translation initiation factor IF-3 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151572309|gb|EDN37963.1| hypothetical protein FTDG_00764 [Francisella novicida GA99-3548]
gi|254840733|gb|EET19169.1| translation initiation factor IF-3 [Francisella tularensis subsp.
tularensis MA00-2987]
Length = 178
Score = 75.9 bits (185), Expect = 4e-11, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 13/187 (6%)
Query: 70 QQKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKAN 127
++KK K +N++I A+ VRLV +G + VVS +EALALA DLVE+ AN
Sbjct: 2 RRKKIIKTDKKAPINEQIKAKEVRLVGVDGQQIGVVSINEALALAEEADVDLVEMVANAN 61
Query: 128 PPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
PPVC++MD Y K L E+ + KA++ K+ KEV+ + D Q+K + +
Sbjct: 62 PPVCRLMD-----YGKYLFEQGKKKAQAKKNQKQTQVKEVKLRPVTDVGDYQVKLRNLIK 116
Query: 188 LMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHV 246
++KG +VK G++ ++LG L R+ + + VVE P +E +Q ++
Sbjct: 117 FLEKGDKVKVTLRFRGREMSHKELGMEMLQRMANDAAEYGVVEHQPKLEGRQMIMVL--- 173
Query: 247 KFGPSKK 253
GP KK
Sbjct: 174 --GPKKK 178
>gi|357042172|ref|ZP_09103878.1| hypothetical protein HMPREF9138_00350 [Prevotella histicola F0411]
gi|355369631|gb|EHG17022.1| hypothetical protein HMPREF9138_00350 [Prevotella histicola F0411]
Length = 226
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I + VR+V D G +V+ +AL LA DLVE+ A PPVC+
Sbjct: 2 KNDKMKMKYRVNEQIRVREVRVVSDNGAEVMPTRKALDLAHQEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K + KE+RF + ++ D K +
Sbjct: 62 IIDYSKFLYQQKKHQKEMKQKQV----------KQEVKEIRFGPQTDEHDYNFKLKHAQE 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++ G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLNAGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKK 258
K G +KK K+
Sbjct: 169 APKKAGVAKKSQQKR 183
>gi|288818072|ref|YP_003432420.1| translation initiation factor 3 [Hydrogenobacter thermophilus TK-6]
gi|384128837|ref|YP_005511450.1| translation initiation factor IF-3 [Hydrogenobacter thermophilus
TK-6]
gi|288787472|dbj|BAI69219.1| translation initiation factor 3 [Hydrogenobacter thermophilus TK-6]
gi|308751674|gb|ADO45157.1| translation initiation factor IF-3 [Hydrogenobacter thermophilus
TK-6]
Length = 172
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 6/157 (3%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ + G ++ V EAL LA DLVE+ +ANPPVCKI+D+ K
Sbjct: 5 RINRQIRAKEVRLIDENGKQIGIVPLEEALKLAEEKGLDLVEIAPQANPPVCKILDYGKF 64
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+++ KEK K + + + + K+++ S +I++ DL++K ++ +++G +V+
Sbjct: 65 VYEQKKKEKVAKKKQREHAI---EVKDIQLSTRIDEHDLKVKLKHMREFLEEGDKVRIRI 121
Query: 200 LPVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVE 235
G++ +LG L R+++ + DI +ES P E
Sbjct: 122 RFRGREHIHPELGDRLVQRILEELSDIGKIESEPKKE 158
>gi|120611522|ref|YP_971200.1| translation initiation factor 3 [Acidovorax citrulli AAC00-1]
gi|120589986|gb|ABM33426.1| bacterial translation initiation factor 3 (bIF-3) [Acidovorax
citrulli AAC00-1]
Length = 173
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 6/154 (3%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS EAL +A L DLVE+ ANPPVC+++D+ K KYQ E K AKAK +
Sbjct: 17 VVSLMEALRMAGELDVDLVEIAATANPPVCRLVDYGKFKYQ-EQKRAAEAKAKQTVI--- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KEV+F + D +K ++R + +G + K G++ +++G L+R+ D
Sbjct: 73 -EIKEVKFRPGTDDGDYNIKLRNIRRFLAEGDKCKITLRFRGREITHQEIGLALLNRIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ D VVE P +E +Q +I K P+ K
Sbjct: 132 DLGDTIVVEQFPKLEGRQMIMMIAPGKRKPAAKA 165
>gi|357416909|ref|YP_004929929.1| translation initiation factor IF-3 [Pseudoxanthomonas spadix
BD-a59]
gi|355334487|gb|AER55888.1| translation initiation factor IF-3 [Pseudoxanthomonas spadix
BD-a59]
Length = 154
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 88/144 (61%), Gaps = 8/144 (5%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA A DLVE+ +A+PPVCKIMDF K K++ + K+ + AK K+ K+
Sbjct: 11 VLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEAQ-KKANEAKKKT----KQ 65
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-- 219
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I
Sbjct: 66 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEN 125
Query: 220 DLIEDISVVESGPHVERKQAYAII 243
DL E+I V+ES P +E +Q +I
Sbjct: 126 DLGEEI-VIESRPRLEGRQMVMMI 148
>gi|300858362|ref|YP_003783345.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis FRC41]
gi|337290622|ref|YP_004629643.1| translation initiation factor IF-3 [Corynebacterium ulcerans
BR-AD22]
gi|375288529|ref|YP_005123070.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383314120|ref|YP_005374975.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis P54B96]
gi|384504540|ref|YP_005681210.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 1002]
gi|384506632|ref|YP_005683301.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis C231]
gi|384508720|ref|YP_005685388.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis I19]
gi|384510811|ref|YP_005690389.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis PAT10]
gi|384515535|ref|YP_005710627.1| translation initiation factor IF-3 [Corynebacterium ulcerans 809]
gi|385807411|ref|YP_005843808.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 267]
gi|386740279|ref|YP_006213459.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 31]
gi|389850295|ref|YP_006352530.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 258]
gi|392400483|ref|YP_006437083.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis Cp162]
gi|397653869|ref|YP_006494552.1| translation initiation factorIF-3 [Corynebacterium ulcerans 0102]
gi|300685816|gb|ADK28738.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206077|gb|ADL10419.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis C231]
gi|302330630|gb|ADL20824.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 1002]
gi|308276315|gb|ADO26214.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis I19]
gi|334696736|gb|AEG81533.1| translation initiation factor IF-3 [Corynebacterium ulcerans 809]
gi|334698928|gb|AEG83724.1| translation initiation factor IF-3 [Corynebacterium ulcerans
BR-AD22]
gi|341824750|gb|AEK92271.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis PAT10]
gi|371575818|gb|AEX39421.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380869621|gb|AFF22095.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis P54B96]
gi|383804804|gb|AFH51883.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 267]
gi|384476973|gb|AFH90769.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 31]
gi|388247601|gb|AFK16592.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 258]
gi|390531561|gb|AFM07290.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis Cp162]
gi|393402825|dbj|BAM27317.1| translation initiation factorIF-3 [Corynebacterium ulcerans 0102]
Length = 148
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +A LA DLVEV A PPVCKIMD+ K KY++ K ++ K + +
Sbjct: 3 IVRIDDARKLAYEADLDLVEVAPNAKPPVCKIMDYGKFKYEQAQKAREARKNQQQTVV-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE +F KI+ D + K + V R ++KG +VK + G+++ +LG L RL D
Sbjct: 61 ---KEQKFRPKIDDHDYETKKNNVIRFLEKGSKVKVTIMFRGREQSRPELGFRLLERLAD 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ D +VE+ P + + + FGP +KG
Sbjct: 118 DVADFGIVETKPKQDGRNMTMV-----FGPVRKG 146
>gi|269798229|ref|YP_003312129.1| translation initiation factor IF-3 [Veillonella parvula DSM 2008]
gi|269094858|gb|ACZ24849.1| translation initiation factor IF-3 [Veillonella parvula DSM 2008]
Length = 182
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ +R+V E ++ +S EALALA DLVE+ A PPV +IM++ K
Sbjct: 19 PRINEEIRARELRVVGPENEQIGIMSGREALALAEEQHLDLVEIAPNAKPPVARIMNYGK 78
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + +TL KEV+ IE D +K + + +G +VK
Sbjct: 79 YRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIEDHDFYVKMKNASKFLAEGNKVKVT 133
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R D +++ + +E +E + I+
Sbjct: 134 IMFRGRELSHPELGMAVLTRFADELKETASIEKAAKLEGRNMTMIL 179
>gi|403253486|ref|ZP_10919787.1| translation initiation factor IF-3 [Thermotoga sp. EMP]
gi|402811020|gb|EJX25508.1| translation initiation factor IF-3 [Thermotoga sp. EMP]
Length = 176
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 11/170 (6%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T PR N++I A VR+V + G V+ +AL LAR DLV V NPPV KIMD
Sbjct: 11 TDLPR-NEQIKAPKVRVVDENGKMIGVMPTRKALELAREKGLDLVLVAPNENPPVAKIMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KYQ L +K + K + + K+++F KI++ D Q K ++R ++ G++V
Sbjct: 70 YGKYKYQ--LTKKQKENKKKPVQM-----KQMKFRLKIDEHDYQTKVKHIRRFLEDGHKV 122
Query: 196 KCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
+ + + +G++ + G L R+I ED++ VES P +E + + +++
Sbjct: 123 RVVVMFIGREMMFAEKGKEILERVIKDTEDLATVESPPKMEGRDMWMVLK 172
>gi|381190278|ref|ZP_09897801.1| translation initiation factor IF-3 [Thermus sp. RL]
gi|380451871|gb|EIA39472.1| translation initiation factor IF-3 [Thermus sp. RL]
Length = 144
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 84/143 (58%), Gaps = 8/143 (5%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD-RAKAKSDITLKKGDCK 165
EAL LA+ DLV V A+PPV +IMD+ K +Y++++ EK+ R KA K+ + K
Sbjct: 5 EALRLAQEQDLDLVLVGPNADPPVARIMDYSKWRYEQQMAEKEARKKA------KRTEVK 58
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIED 224
++F KI++ D Q K +KR + +G++VK + G++ +LG L+R+ + ++D
Sbjct: 59 SIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMXRGREVAHPELGERILNRVAEDLKD 118
Query: 225 ISVVESGPHVERKQAYAIIRHVK 247
++VVE P + + ++ VK
Sbjct: 119 LAVVEMKPEMLGRDMNMLLAPVK 141
>gi|28199782|ref|NP_780096.1| translation initiation factor IF-3 [Xylella fastidiosa Temecula1]
gi|28057903|gb|AAO29745.1| initiation factor IF-3 [Xylella fastidiosa Temecula1]
Length = 154
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 89/143 (62%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA+A DLVE+ +A+PPVCK+M+F K K++++ K+ + AK K+ K+
Sbjct: 11 VLSRDEALAMAEKEGLDLVEIQPQADPPVCKVMNFGKFKFEQQ-KKANEAKKKT----KQ 65
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDL 221
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I++
Sbjct: 66 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKINIRFRGREMSHQELGRQMAARIEM 125
Query: 222 -IEDISVVESGPHVERKQAYAII 243
+ D V+ES P +E +Q ++
Sbjct: 126 DLGDDVVIESRPRLEGRQMVMMV 148
>gi|89898050|ref|YP_515160.1| translation initiation factor IF-3 [Chlamydophila felis Fe/C-56]
gi|89331422|dbj|BAE81015.1| translation initiation factor IF-3 [Chlamydophila felis Fe/C-56]
Length = 186
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 83 LNDKINAQF----VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
LN KIN Q VRL+ G + +++ +AL LAR DLVEV + PPVCKIMD+
Sbjct: 3 LNLKINRQIRAPKVRLIGSSGEQLGILNTKDALDLARESDLDLVEVASNSEPPVCKIMDY 62
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y KEKD KA+ + + KEV+ I++ D K + ++KG +VK
Sbjct: 63 GKYRYNLTKKEKDSKKAQHQVRI-----KEVKLKPNIDENDFSTKLKQARSFIEKGNKVK 117
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + ++ +ED+ VES P + + ++
Sbjct: 118 ITCMFRGRELAYPEHGHKVVQKMSQGLEDVGFVESEPKLNGRSLICVV 165
>gi|423348883|ref|ZP_17326539.1| translation initiation factor IF-3 [Scardovia wiggsiae F0424]
gi|393703112|gb|EJD65313.1| translation initiation factor IF-3 [Scardovia wiggsiae F0424]
Length = 294
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ +G +V V AL LAR DLVEV A PPV K++D+ K KY +++K ++
Sbjct: 1 MRLIGPQGEQVGIVKTTIALNLAREANLDLVEVSPHAKPPVAKLIDYGKFKYNEKIKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +S + KE RF KI+ D ++K + V R ++ G +VK + G +E++
Sbjct: 61 ARRNQST-----AEVKETRFRLKIDDHDFEVKKNQVARFLEGGDKVKVSIMLRG-REQSR 114
Query: 210 DLGG--YLSRLIDLIEDISVVESGPH 233
+GG + RL +E+ VES P
Sbjct: 115 PVGGIELMQRLAGEVEETGTVESAPR 140
>gi|251795320|ref|YP_003010051.1| translation initiation factor IF-3 [Paenibacillus sp. JDR-2]
gi|247542946|gb|ACS99964.1| translation initiation factor IF-3 [Paenibacillus sp. JDR-2]
Length = 193
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRLV +G ++ S +A+ +A L DLV V A PPVC+IMD+ K +
Sbjct: 29 INDEIRAREVRLVGADGEQIGIKSIRDAMQMAIDLSLDLVNVAPTAKPPVCRIMDYGKFR 88
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + + D KEV F I++ D Q K V + + +G +VK
Sbjct: 89 YEQQKKEKEARKNQKIV-----DLKEVWFRANIDEHDYQTKFRNVVKFLGEGDKVKASVR 143
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +G L RL + +I VE P +E + I+
Sbjct: 144 FRGREIAHAAIGQKILDRLAQEVAEICSVERAPKLEGRSMIMIL 187
>gi|365873903|ref|ZP_09413436.1| translation initiation factor IF-3 [Thermanaerovibrio velox DSM
12556]
gi|363983990|gb|EHM10197.1| translation initiation factor IF-3 [Thermanaerovibrio velox DSM
12556]
Length = 275
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N +I A V L+ D+ KV V EAL +A + DLVEV A PPVCKIMD+ K
Sbjct: 78 PRVNLEIRAAEVLLIDDQNVKVGVVPLQEALRMAEERELDLVEVAPLAKPPVCKIMDYGK 137
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
++Q++ ++KD K + L KE++ KI+ D K V+ ++ G+RVK
Sbjct: 138 YRFQQQKRDKDARKKQKSQAL-----KEIKMRPKIDVHDYSFKVRAVRDFLEDGHRVKVS 192
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ D G L R+ + D+ VE P +E
Sbjct: 193 VFFRGREMAFLDKGREVLDRVRKDVADLGKVEMEPRME 230
>gi|71275166|ref|ZP_00651453.1| Initiation factor 3 [Xylella fastidiosa Dixon]
gi|170731157|ref|YP_001776590.1| translation initiation factor IF-3 [Xylella fastidiosa M12]
gi|71163975|gb|EAO13690.1| Initiation factor 3 [Xylella fastidiosa Dixon]
gi|71731986|gb|EAO34043.1| Initiation factor 3 [Xylella fastidiosa subsp. sandyi Ann-1]
gi|167965950|gb|ACA12960.1| translation initiation factor IF-3 [Xylella fastidiosa M12]
Length = 147
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 89/143 (62%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA+A DLVE+ +A+PPVCK+M+F K K++++ K+ + AK K+ K+
Sbjct: 4 VLSRDEALAMAEKEGLDLVEIQPQADPPVCKVMNFGKFKFEQQ-KKANEAKKKT----KQ 58
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDL 221
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I++
Sbjct: 59 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKINIRFRGREMSHQELGRQMATRIEM 118
Query: 222 -IEDISVVESGPHVERKQAYAII 243
+ D V+ES P +E +Q ++
Sbjct: 119 DLGDDVVIESRPRLEGRQMVMMV 141
>gi|357039270|ref|ZP_09101064.1| Translation initiation factor IF-3 [Desulfotomaculum gibsoniae DSM
7213]
gi|355358169|gb|EHG05937.1| Translation initiation factor IF-3 [Desulfotomaculum gibsoniae DSM
7213]
Length = 155
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+ EAL LA Q DLVE+ +A PPVC+IMD+ K +Y++ +EK+ K + I +
Sbjct: 11 VLPTREALKLAEEKQLDLVEIAPQAKPPVCRIMDYGKFRYEQSKREKEARKNQRIINV-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KEV+ IE D ++KA R + G +VK + G++ DLG L R+ +
Sbjct: 69 ---KEVKLRPNIEDHDFEVKAKNAIRFLKDGDKVKVTIMFRGRQIVHPDLGKKLLVRMAE 125
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ D++ VE P +E K I+
Sbjct: 126 QVTDLANVERQPKLEGKNMIMIL 148
>gi|260655004|ref|ZP_05860492.1| translation initiation factor IF-3 [Jonquetella anthropi E3_33 E1]
gi|424844861|ref|ZP_18269472.1| translation initiation factor IF-3 [Jonquetella anthropi DSM 22815]
gi|260630319|gb|EEX48513.1| translation initiation factor IF-3 [Jonquetella anthropi E3_33 E1]
gi|363986299|gb|EHM13129.1| translation initiation factor IF-3 [Jonquetella anthropi DSM 22815]
Length = 182
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
K T PR+N++I A+ + ++ DEG K V++ EA+ +A + D+VEV PPVC++
Sbjct: 6 KSTDEPRVNEEITAEQILVIDDEGVKLGVMTVEEAIHIASERELDVVEVAPDGKPPVCRV 65
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
MD+ K +YQ++ + KD A+ K + KE++ KI++ D K + + ++ G+
Sbjct: 66 MDYGKYRYQQQKRVKD-ARKKQKVQA----LKEMKMRPKIDEHDYDFKTRAIAKFLETGH 120
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
RVK G++ D G L+R+ + ++ +E P +E + A+
Sbjct: 121 RVKVSVFFRGREMAFLDKGRDVLNRVAADVAEVGRMEGEPRMEGRYMRAMF 171
>gi|76789578|ref|YP_328664.1| translation initiation factor IF-3 [Chlamydia trachomatis A/HAR-13]
gi|237803265|ref|YP_002888459.1| translation initiation factor IF-3 [Chlamydia trachomatis
B/Jali20/OT]
gi|237805186|ref|YP_002889340.1| translation initiation factor IF-3 [Chlamydia trachomatis
B/TZ1A828/OT]
gi|376282845|ref|YP_005156671.1| protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis A2497]
gi|76168108|gb|AAX51116.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis A/HAR-13]
gi|231273486|emb|CAX10402.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231274499|emb|CAX11295.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis B/Jali20/OT]
gi|371908875|emb|CAX09508.1| bacterial protein translation initiation factor 3 (IF-3) [Chlamydia
trachomatis A2497]
gi|438690772|emb|CCP50029.1| translation initiation factor IF-3 [Chlamydia trachomatis A/7249]
gi|438691857|emb|CCP49131.1| translation initiation factor IF-3 [Chlamydia trachomatis A/5291]
gi|438693230|emb|CCP48232.1| translation initiation factor IF-3 [Chlamydia trachomatis A/363]
Length = 175
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PVCKIMD+ K
Sbjct: 6 RINRQIRAPRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSESPVCKIMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 66 RYDVTKKEKDSKKAQHRVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 121 MFRGRELAYPEHGHKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 165
>gi|386859416|ref|YP_006272122.1| translation initiation factor IF-3 [Borrelia crocidurae str.
Achema]
gi|384934297|gb|AFI30970.1| Translation initiation factor IF-3 [Borrelia crocidurae str.
Achema]
Length = 186
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N +I A+ VR++ ++G V+ +A+ AR ++ DLVE+ A PPVCKI+D+ K K
Sbjct: 21 RINYRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLVEISPNALPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K + + +G +VK
Sbjct: 81 FHQEKRQKEQRKNQKIIKL-----KEVRMQPKIDTHDLDFKYKNILGFLKEGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L +++ + D + V+ES +E K + II
Sbjct: 136 FRGRELAHTHLGYGILESILERVGDSNYVLESPAKMEGKTMFLII 180
>gi|148241189|ref|YP_001226346.1| translation initiation factor IF-3 [Synechococcus sp. RCC307]
gi|166233786|sp|A5GQ34.1|IF3_SYNR3 RecName: Full=Translation initiation factor IF-3
gi|147849499|emb|CAK26993.1| Translation initiation factor IF-3 [Synechococcus sp. RCC307]
Length = 215
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+SR EAL +AR + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPKLRVVDADGTQLGVISRDEALDVARERELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+ D Q++ R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDAHDYQVRIGQAVRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + L L R+ +E+ + V+ P E
Sbjct: 132 VIFRGREIQHTALAEKLLMRMAKDLEESAEVQQPPKRE 169
>gi|307721909|ref|YP_003893049.1| translation initiation factor 3 [Sulfurimonas autotrophica DSM
16294]
gi|306980002|gb|ADN10037.1| bacterial translation initiation factor 3 (bIF-3) [Sulfurimonas
autotrophica DSM 16294]
Length = 172
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I VR +D G VVS EA+ A + DLV + A PPV KIMD+ K K
Sbjct: 10 MNDDIRVPEVRCNVDGGEPLGVVSTDEAMTKANEMGLDLVLIAPNAKPPVAKIMDYGKFK 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K K++ K + I + KE++ S KI + D+ K + ++KG+ VK
Sbjct: 70 YQEEKKLKEQRKNQVKIVV-----KEIKLSVKIAENDIAYKVKHAREFLEKGFHVKFRVF 124
Query: 201 PVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
G++ E L ++ ++EDI+V+E P E
Sbjct: 125 LRGREMAHPEAAKEVLMQVWPMVEDIAVMEKPPKFE 160
>gi|414342350|ref|YP_006983871.1| protein translation initiation factor 3 [Gluconobacter oxydans H24]
gi|411027685|gb|AFW00940.1| protein translation initiation factor 3 [Gluconobacter oxydans H24]
gi|453331622|dbj|GAC86536.1| translation initiation factor 3 [Gluconobacter thailandicus NBRC
3255]
Length = 173
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+N++I VRL+ +EG V++ +AL A S+ DL+E+ A PPV KI+D+
Sbjct: 8 EGPRVNEEIRVPQVRLIDEEGEMQGVMTTRDALMRAFSVGLDLLEISPTAVPPVVKILDY 67
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ K+K+ A+ K + + KEV+ + D Q K + +D G +VK
Sbjct: 68 GKFKYEQQ-KKKNEARKKQKVI----EIKEVKVRPGTGEHDFQTKLKAINSFLDDGDKVK 122
Query: 197 CMALPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ ++LG + I L +E+ + VE P +E +Q +I
Sbjct: 123 VSLRFKGREMAHQELGAKMMERIRLEVEEKAKVEQMPRMENRQMLMVI 170
>gi|302342264|ref|YP_003806793.1| translation initiation factor IF-3 [Desulfarculus baarsii DSM 2075]
gi|301638877|gb|ADK84199.1| translation initiation factor IF-3 [Desulfarculus baarsii DSM 2075]
Length = 170
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 92/156 (58%), Gaps = 12/156 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ + A VRL+ +G + VVS +AL +A+ DLVEV A PPVC++MD+ K
Sbjct: 8 RVNESVRAPQVRLISADGEQLGVVSADQALKIAQEAGLDLVEVAPNAAPPVCRVMDYGKY 67
Query: 140 KYQ--KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
KY+ K+L+E + +A++ + KEV+ KI++ D Q+K V+R +++ RVK
Sbjct: 68 KYEQAKKLQEAKKKQAQTQV-------KEVKMRPKIDENDFQVKMRNVQRFLEERNRVKV 120
Query: 198 MALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
G++ + G L+R+ + +++++ V++ P
Sbjct: 121 TVQFRGREIAYAEAGERLLARVAETVQEMASVDAPP 156
>gi|300703879|ref|YP_003745481.1| translation initiation factor if-3 [Ralstonia solanacearum
CFBP2957]
gi|299071542|emb|CBJ42866.1| Translation initiation factor IF-3 [Ralstonia solanacearum
CFBP2957]
Length = 178
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A +RL EG + +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 13 RINREITAPEIRLTGVEGEQLGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ AK K + KEV+F + D ++K +KR +D+G R K
Sbjct: 73 KYQ-EQKKAHEAKLKQKVI----QVKEVKFRPGTDDGDYEVKLRNLKRFLDEGDRAKITL 127
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQ 238
G++ +++G L RL +E+ + VE P +E +Q
Sbjct: 128 RFRGREMAHQEIGARMLERLKVDLEEHAQVEQMPKMEGRQ 167
>gi|197301819|ref|ZP_03166889.1| hypothetical protein RUMLAC_00546 [Ruminococcus lactaris ATCC
29176]
gi|197299259|gb|EDY33789.1| translation initiation factor IF-3 [Ruminococcus lactaris ATCC
29176]
Length = 164
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ +G + ++S EA+ LA+ + DLV++ A PPVCKI+D+ K K
Sbjct: 2 INEQIRDREVRLIGTDGEQLGIMSAREAMKLAQEAELDLVKIAPGAKPPVCKIIDYGKYK 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ KEK+ K + + + KEVR S I+ DL K + K+ + KG +VK
Sbjct: 62 YEQTRKEKEAKKKQRTV-----EIKEVRLSPNIDTNDLNTKMNNAKKFISKGNKVKVTLR 116
Query: 201 PVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
G++ + L ++ED++VVE +E
Sbjct: 117 FRGREMAHVQQSKHILDDFAKMLEDVAVVEKAAKLE 152
>gi|456736816|gb|EMF61542.1| Translation initiation factor 3 [Stenotrophomonas maltophilia EPM1]
Length = 159
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 10/156 (6%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VR++ +G V+SR EAL++A DLVE+ +A+PPVCKIMDF K K++ + K+
Sbjct: 4 VRVIGSDGEMIGVLSRDEALSMAEDEGLDLVEIQPQADPPVCKIMDFGKFKFEAQ-KKAS 62
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K+ K+ + KEV+F ++ D Q+K ++ ++ G ++K G++ +
Sbjct: 63 EAKKKT----KQVEIKEVKFRPVTDEGDYQIKLRKMRGFLEDGDKIKVNIRFRGREMSHQ 118
Query: 210 DLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
+LG ++ I DL EDI V+ES P +E +Q +I
Sbjct: 119 ELGREMANRIETDLGEDI-VIESRPRLEGRQMVMMI 153
>gi|428207336|ref|YP_007091689.1| translation initiation factor 3 (bIF-3) [Chroococcidiopsis
thermalis PCC 7203]
gi|428009257|gb|AFY87820.1| bacterial translation initiation factor 3 (bIF-3)
[Chroococcidiopsis thermalis PCC 7203]
Length = 178
Score = 75.9 bits (185), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ +EAL +A + DLV + KA+PPVC+IMD+ K
Sbjct: 14 PQINERIRFPKIRVIDTDGSQMGILTPYEALQIAEEKELDLVLLSDKADPPVCRIMDYGK 73
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D +++ + +R + G +VK
Sbjct: 74 YKFEQEKKAREARKKQ-----HTADVKEVKMRYKIEEHDYRVRVNQAERFLKDGDKVKAT 128
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ ++++ ++ P E + +I
Sbjct: 129 VMFRGREIQHSDLAETLLKRMATDLQEVGELQQAPKKEGRNMMMLI 174
>gi|295397489|ref|ZP_06807572.1| translation initiation factor IF3 [Aerococcus viridans ATCC 11563]
gi|294974289|gb|EFG50033.1| translation initiation factor IF3 [Aerococcus viridans ATCC 11563]
Length = 198
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +R++ EG + V+S+ EAL A ++ DLV V A PPV +IMD+ K +
Sbjct: 34 VNENIRARELRVIDSEGEQLGVLSKDEALDKAEQVELDLVLVSPNAKPPVARIMDYGKYR 93
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KE+++ + + ++L KEVR S IEQ D K ++ ++KG +VK
Sbjct: 94 YEQQRKEREQRQNQKQVSL-----KEVRLSPTIEQNDFDTKLRQARKFLEKGDKVKASIR 148
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G+ +++G L R + ++D++ VE P +E
Sbjct: 149 FRGRAITHKEIGREVLERFAEELKDVAEVEQRPKME 184
>gi|182682532|ref|YP_001830692.1| translation initiation factor IF-3 [Xylella fastidiosa M23]
gi|386083863|ref|YP_006000145.1| translation initiation factor IF-3 [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|417559063|ref|ZP_12210017.1| Translation initiation factor IF3 InfC [Xylella fastidiosa EB92.1]
gi|182632642|gb|ACB93418.1| translation initiation factor IF-3 [Xylella fastidiosa M23]
gi|307578810|gb|ADN62779.1| translation initiation factor IF-3 [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|338178331|gb|EGO81322.1| Translation initiation factor IF3 InfC [Xylella fastidiosa EB92.1]
Length = 147
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 89/143 (62%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+SR EALA+A DLVE+ +A+PPVCK+M+F K K++++ K+ + AK K+ K+
Sbjct: 4 VLSRDEALAMAEKEGLDLVEIQPQADPPVCKVMNFGKFKFEQQ-KKANEAKKKT----KQ 58
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDL 221
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I++
Sbjct: 59 VEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKINIRFRGREMSHQELGRQMAARIEM 118
Query: 222 -IEDISVVESGPHVERKQAYAII 243
+ D V+ES P +E +Q ++
Sbjct: 119 DLGDDVVIESRPRLEGRQMVMMV 141
>gi|379718618|ref|YP_005310749.1| protein InfC [Paenibacillus mucilaginosus 3016]
gi|378567290|gb|AFC27600.1| InfC [Paenibacillus mucilaginosus 3016]
Length = 154
Score = 75.5 bits (184), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
EAL +A+ L DLV V A PPVC++MD+ K +Y+ + KEK+ K + + D KE
Sbjct: 16 EALQMAQDLNLDLVNVAPTAKPPVCRVMDYGKFRYETQKKEKEARKNQKIV-----DLKE 70
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDI 225
+R S I++ D Q K V++ + G +VK G++ +G L R+ +E++
Sbjct: 71 IRLSATIDEHDFQTKLRNVEKFLSDGDKVKLSVRFRGREIAHASIGQKVLERMAATVEEL 130
Query: 226 SVVESGPHVERKQAYAII 243
VVE P +E + I+
Sbjct: 131 CVVERRPKLEGRSMIMIL 148
>gi|431806413|ref|YP_007233314.1| translation initiation factor 3 [Liberibacter crescens BT-1]
gi|430800388|gb|AGA65059.1| Translation initiation factor 3 [Liberibacter crescens BT-1]
Length = 162
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I V+L+ +GH + VS +AL +A DL+E+ NPPVCKI+D K K
Sbjct: 1 MNKAIRVPKVQLINADGHNMGEVSTSDALRMAEEAGLDLMEISSNTNPPVCKILDLGKLK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y + K+ A+ K I + KE++ I+ D ++K ++R + G++VK
Sbjct: 61 YSNQ-KKAAEARKKQKII----EVKEIKMRPNIDTHDYEVKMKAMRRFFEDGHKVKLTLK 115
Query: 201 PVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L ++ D I+D++ VE+ P +E +Q ++
Sbjct: 116 FRGREMAHQDLGMKLFMKIKDQIQDVAKVETDPKLEGRQVMMVL 159
>gi|254410410|ref|ZP_05024189.1| translation initiation factor IF-3 [Coleofasciculus chthonoplastes
PCC 7420]
gi|196182616|gb|EDX77601.1| translation initiation factor IF-3 [Coleofasciculus chthonoplastes
PCC 7420]
Length = 175
Score = 75.5 bits (184), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R + +G + +++ EAL +A + DLV V KA+PPVC+IMD+ K
Sbjct: 11 PQINERIRYPKIRAIDTDGTQLGIIAPQEALRIAEEKELDLVLVSDKADPPVCRIMDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KI+ D Q++ + +R + G +VK
Sbjct: 71 YKFEQEKKAREARKKQ-----HTADVKEVKMRYKIDDHDYQVRVNAARRFLKSGDKVKAT 125
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G++ + +L L R+ ++D++ V+ P E + ++ K
Sbjct: 126 ITFRGREIQHANLAEDLLKRMATDLQDVAEVQQAPKREGRNMMMLLSSKK 175
>gi|422939030|ref|YP_007012177.1| translation initiation factor IF-3 [Francisella tularensis subsp.
holarctica FSC200]
gi|407294181|gb|AFT93087.1| translation initiation factor IF-3 [Francisella tularensis subsp.
holarctica FSC200]
Length = 178
Score = 75.5 bits (184), Expect = 6e-11, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV +G + VVS +EALALA DLVE+ ANPPVC++MD
Sbjct: 15 INEQIKAKEVRLVGVDGQQIGVVSINEALALAEEADVDLVEMVANANPPVCRLMD----- 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y K L E+ + KA++ K+ KEV+ + D Q+K + + ++KG +VK
Sbjct: 70 YGKYLFEQGKKKAQAKKNQKQTQVKEVKLRPVTDVGDYQVKLRNLIKFLEKGDKVKVTLR 129
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ ++LG L R+ + + VVE P +E +Q ++ GP KK
Sbjct: 130 FRGREMSHKELGMEMLQRMANDAAEYGVVEHQPKLEGRQMIMVL-----GPKKK 178
>gi|410944365|ref|ZP_11376106.1| translation initiation factor IF-3 [Gluconobacter frateurii NBRC
101659]
Length = 173
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+N++I VRL+ +EG V+S +AL A S+ DL+E+ A PPV KI+D+
Sbjct: 8 EGPRVNEEIRVPQVRLIDEEGEMQGVMSTRDALMRAFSVGLDLLEISPTAVPPVVKILDY 67
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ K+K+ A+ K + + KEV+ + D Q K + +D G +VK
Sbjct: 68 GKFKYEQQ-KKKNEARKKQKVI----EIKEVKVRPGTGEHDFQTKLKAINSFLDDGDKVK 122
Query: 197 CMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG + R+ +E+ + VE P +E +Q +I
Sbjct: 123 VSLRFKGREMAHQELGAKMMERIRAEVEEKAKVEQMPRMENRQMLMVI 170
>gi|332798665|ref|YP_004460164.1| Translation initiation factor IF-3 [Tepidanaerobacter acetatoxydans
Re1]
gi|332696400|gb|AEE90857.1| Translation initiation factor IF-3 [Tepidanaerobacter acetatoxydans
Re1]
Length = 189
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N +I + VR++ +G + ++S +AL A+ +Q DLV++ A PPVCKIMDF K
Sbjct: 21 QVNHEIRDREVRVISPDGKQLGIMSLKDALHYAQEVQLDLVKISSDAKPPVCKIMDFGKY 80
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ +EK+ K + I + KE+R + I++ D Q++ + + G +VK
Sbjct: 81 KYEQSKREKEARKKQKVI-----NVKEIRMNPTIDEHDFQVRLKNTIKFLKDGDKVKVSI 135
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ LG L+R+++ I ++ VVE P +E + +I
Sbjct: 136 RFRGRQMTHTKLGEEVLNRVVENISEVGVVEKPPKMEGRNMVMVI 180
>gi|222823075|ref|YP_002574648.1| translation initiation factor IF-3 [Campylobacter lari RM2100]
gi|254803484|sp|B9KEB2.1|IF3_CAMLR RecName: Full=Translation initiation factor IF-3
gi|222538296|gb|ACM63397.1| translation initiation factor IF-3 [Campylobacter lari RM2100]
Length = 173
Score = 75.5 bits (184), Expect = 6e-11, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LND+I A +R + D+G + ++S EAL +A L DLV + +A PPVCKIMD+ K +
Sbjct: 9 LNDEIQADEIRCIGDDGKVYGIISSDEALDIANRLGLDLVMIAPEAKPPVCKIMDYGKFR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K+K+ K + I D KE++ S KI Q D+ K +++G VK
Sbjct: 69 YQQEKKQKEAKKKQKVI-----DIKEIKLSVKIAQNDINYKVKHASEFLEQGKHVKFRVF 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ + + G L ++ ++EDI+ + P +E
Sbjct: 124 LKGREMGSPEAGVALLEKIWQMVEDIADRDKEPLLE 159
>gi|428308989|ref|YP_007119966.1| translation initiation factor 3 (bIF-3) [Microcoleus sp. PCC 7113]
gi|428250601|gb|AFZ16560.1| bacterial translation initiation factor 3 (bIF-3) [Microcoleus sp.
PCC 7113]
Length = 175
Score = 75.5 bits (184), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPV 130
++ ++ P +N++I +R++ +G + +++ EAL +A + DLV V KA+PPV
Sbjct: 3 ENRRQRDLPPINERIRFPNIRVIDTDGGQLGIITPQEALRIAEEKELDLVLVSDKADPPV 62
Query: 131 CKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMD 190
C+IMD+ K K+++E K ++ K + D KEV+ KIE+ D Q++ + +R +
Sbjct: 63 CRIMDYGKYKFEQEKKAREARKKQ-----HTADVKEVKMRYKIEEHDYQVRVNQAERFLK 117
Query: 191 KGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G +VK G++ + DL L R+ +E+++ V+ P E
Sbjct: 118 SGDKVKATITFRGREIQHSDLAEDLLKRMAMDLEELAEVQQLPKRE 163
>gi|146282711|ref|YP_001172864.1| translation initiation factor IF-3 [Pseudomonas stutzeri A1501]
gi|339494346|ref|YP_004714639.1| translation initiation factor IF-3 [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
gi|386021078|ref|YP_005939102.1| translation initiation factor IF-3 [Pseudomonas stutzeri DSM 4166]
gi|145570916|gb|ABP80022.1| translation initiation factor IF-3 [Pseudomonas stutzeri A1501]
gi|327481050|gb|AEA84360.1| translation initiation factor IF-3 [Pseudomonas stutzeri DSM 4166]
gi|338801718|gb|AEJ05550.1| translation initiation factor IF-3 [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
Length = 177
Score = 75.5 bits (184), Expect = 6e-11, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D + +N+ I A+ VRL+ +G ++ VS EAL +A + DLVE+ ANPP
Sbjct: 2 RQDRRAQPKAPINENITAREVRLIGVDGEQIGIVSIDEALRVAEEAKLDLVEISADANPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + + KE++F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQAAAAKKNQHQQQIKEIKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
+ G + K G++ ++LG L + + DLIE I VE P +E +Q +I
Sbjct: 117 EDGDKAKVSLRFRGREMAHQELGMELLKRVEADLIE-IGTVEQHPKLEGRQLMMVI 171
>gi|81429008|ref|YP_396008.1| translation initiation factor IF-3 [Lactobacillus sakei subsp.
sakei 23K]
gi|78610650|emb|CAI55701.1| Translation initiation factor IF-3 [Lactobacillus sakei subsp.
sakei 23K]
Length = 167
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ +RL+ +G + + S +A+ALA D+V V A PPV +IMD+ K +
Sbjct: 2 VNDGIRARELRLIAQDGEQLGIKSTQDAIALAEQANMDVVLVSPNAKPPVARIMDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ + K++D K + I+L KEVR S IEQ D K + ++ + KG +VK
Sbjct: 62 FELQKKQRDARKKQKTISL-----KEVRLSPTIEQNDFNTKLNNARKFLGKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G+ +++G L RL EDI+ V + P ++ + + ++ +K
Sbjct: 117 FKGRAITHKEIGQRVLERLAKETEDIAKVTARPKMDGRSMFLMLEPLK 164
>gi|420236909|ref|ZP_14741385.1| translation initiation factor IF-3 [Parascardovia denticolens IPLA
20019]
gi|391879837|gb|EIT88338.1| translation initiation factor IF-3 [Parascardovia denticolens IPLA
20019]
Length = 232
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 108 ALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEV 167
A+ LAR DLVEV A PPV K++D+ K KY +++K ++ + +S + KE
Sbjct: 6 AMNLAREANLDLVEVSAHAKPPVAKLIDYGKFKYNEKIKAREARRNQST-----AEVKES 60
Query: 168 RFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG--YLSRLIDLIEDI 225
RF KI+ D ++K + V R ++ G +VK + G +E++ +GG + RL D +E+
Sbjct: 61 RFRLKIDDHDFEVKKNQVSRFLEGGDKVKVSIMLRG-REQSRPVGGIELMQRLADEVEEF 119
Query: 226 SVVESGPH 233
VES P
Sbjct: 120 GTVESAPR 127
>gi|282896200|ref|ZP_06304223.1| Initiation factor 3 [Raphidiopsis brookii D9]
gi|281198889|gb|EFA73767.1| Initiation factor 3 [Raphidiopsis brookii D9]
Length = 177
Score = 75.5 bits (184), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +EG + +++ EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDNEGAQLGIMAPLEALRLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQ-----HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L+R+ +E ++ P E + +I
Sbjct: 128 VMFRGREIQHSDLAETLLNRMATDLEPFGEIQQAPKKEGRNMMMLI 173
>gi|340753695|ref|ZP_08690471.1| translation initiation factor IF-3 [Fusobacterium sp. 2_1_31]
gi|229423258|gb|EEO38305.1| translation initiation factor IF-3 [Fusobacterium sp. 2_1_31]
Length = 180
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 79/133 (59%), Gaps = 7/133 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI + R++ +G + ++S +AL LA S DLVE+ ANPPVCKIMD+ K
Sbjct: 17 RINEKIRGKEFRIISFDGEQLGIMSAEQALNLASSQGYDLVEIAPGANPPVCKIMDYSKY 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KE++ + +I+ DL+ K + V + ++K +VK
Sbjct: 77 KYEQTRKLKEAKKNQKQVVV-----KEIKVTARIDSHDLETKLNQVNKFLEKENKVKITL 131
Query: 200 LPVGKKEETEDLG 212
+ G+++ +LG
Sbjct: 132 VLFGREKMHANLG 144
>gi|56751447|ref|YP_172148.1| translation initiation factor IF-3 [Synechococcus elongatus PCC
6301]
gi|81298876|ref|YP_399084.1| translation initiation factor IF-3 [Synechococcus elongatus PCC
7942]
gi|56686406|dbj|BAD79628.1| translation initiation factor IF-3 [Synechococcus elongatus PCC
6301]
gi|81167757|gb|ABB56097.1| bacterial translation initiation factor 3 (bIF-3) [Synechococcus
elongatus PCC 7942]
Length = 184
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 97/177 (54%), Gaps = 13/177 (7%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R+V +G + +++ EAL +A + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PQINERIRFPKIRVVDTDGAQLGILTPAEALRIAEEKELDLVLVSDKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E + ++ K + ++ + KEV+ KI++ D Q++ + +R + G +VK
Sbjct: 77 YKFEQEKRAREARKKQHNV-----EVKEVKMRYKIDEHDYQVRVNQAQRFLKAGDKVKAT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
G++ + DL L RL ++++ V+ P E + ++ GP K G
Sbjct: 132 ITFRGREIQHTDLAQQLLMRLASDLKELGEVQQAPKKEGRNMMMML-----GPKKAG 183
>gi|338706801|ref|YP_004673569.1| initiation factor IF3 [Treponema paraluiscuniculi Cuniculi A]
gi|335344862|gb|AEH40778.1| initiation factor IF3 [Treponema paraluiscuniculi Cuniculi A]
Length = 179
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N I + VRLV G + VV EAL +AR + DLVEV +A+PPVCKI+D+ K
Sbjct: 14 RINGSIRVREVRLVDAVGQQCGVVPTLEALRMARDINLDLVEVAPQASPPVCKILDYGKY 73
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+++ K +D K + TL KEVR KI D+ KA ++R +D+G +VK
Sbjct: 74 RFEMGKKLRDSKKRQRLQTL-----KEVRMQPKINDHDMAFKAKHIQRFLDEGDKVKVTI 128
Query: 200 LPVGKKEETEDLG-----GYLSRLI 219
G++ DLG L RL+
Sbjct: 129 RFRGRELAHTDLGFNVLQNVLGRLV 153
>gi|294787058|ref|ZP_06752312.1| translation initiation factor IF-3 [Parascardovia denticolens
F0305]
gi|315226707|ref|ZP_07868495.1| translation initiation factor IF3 [Parascardovia denticolens DSM
10105 = JCM 12538]
gi|294485891|gb|EFG33525.1| translation initiation factor IF-3 [Parascardovia denticolens
F0305]
gi|315120839|gb|EFT83971.1| translation initiation factor IF3 [Parascardovia denticolens DSM
10105 = JCM 12538]
Length = 232
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 108 ALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEV 167
A+ LAR DLVEV A PPV K++D+ K KY +++K ++ + +S + KE
Sbjct: 6 AMNLAREANLDLVEVSAHAKPPVAKLIDYGKFKYNEKIKAREARRNQST-----AEVKES 60
Query: 168 RFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG--YLSRLIDLIEDI 225
RF KI+ D ++K + V R ++ G +VK + G +E++ +GG + RL D +E+
Sbjct: 61 RFRLKIDDHDFEVKKNQVSRFLEGGDKVKVSIMLRG-REQSRPVGGIELMQRLADEVEEF 119
Query: 226 SVVESGPH 233
VES P
Sbjct: 120 GTVESAPR 127
>gi|298480839|ref|ZP_06999034.1| translation initiation factor IF-3 [Bacteroides sp. D22]
gi|336405601|ref|ZP_08586278.1| translation initiation factor IF-3 [Bacteroides sp. 1_1_30]
gi|423213194|ref|ZP_17199723.1| translation initiation factor IF-3 [Bacteroides xylanisolvens
CL03T12C04]
gi|295085228|emb|CBK66751.1| bacterial translation initiation factor 3 (bIF-3) [Bacteroides
xylanisolvens XB1A]
gi|298272862|gb|EFI14428.1| translation initiation factor IF-3 [Bacteroides sp. D22]
gi|335937472|gb|EGM99372.1| translation initiation factor IF-3 [Bacteroides sp. 1_1_30]
gi|392694111|gb|EIY87340.1| translation initiation factor IF-3 [Bacteroides xylanisolvens
CL03T12C04]
Length = 203
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 22/204 (10%)
Query: 82 RLNDKINAQFVRLVLDEGH-KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N++I A+ VR+V D+ KV +AL +A + DLVE+ A PPVC+I+D+ K
Sbjct: 11 RINEQIRAKEVRIVSDDIEPKVYPIFQALKMAEERELDLVEISPNAQPPVCRIIDYSKFL 70
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ + ++K++ KAK K + KE+RF + + D K K ++ G +VK
Sbjct: 71 YQLKKRQKEQ-KAKQ----VKVNVKEIRFGPQTDDHDYNFKLKHAKGFLEDGDKVKAYVF 125
Query: 201 PVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGL 256
G+ KE+ E L L R + +ED + V+ P +E K+ ++ P KK
Sbjct: 126 FKGRSILFKEQGEVL---LLRFANDLEDYAKVDQMPILEGKRM-----TIQLSPKKKEAS 177
Query: 257 KKLKAVGDTSGVSKAATPSSTIER 280
KK T+G K A P+ E+
Sbjct: 178 KK----PATAGTPKPAAPAQKAEK 197
>gi|225873842|ref|YP_002755301.1| translation initiation factor IF-3 [Acidobacterium capsulatum ATCC
51196]
gi|225794043|gb|ACO34133.1| translation initiation factor IF-3 [Acidobacterium capsulatum ATCC
51196]
Length = 174
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 11/148 (7%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
EAL +AR DLVE+ A PPVC+I D+ K Y+K+ ++ K + IT+ KE
Sbjct: 18 EALKIARERSLDLVEISPNATPPVCRIQDYGKFLYEKDKSDRATRKKQKIITI-----KE 72
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDI 225
V+FS +++ D Q K + R +++G +VK G++ DLG ++RLI I D
Sbjct: 73 VKFSVTVDEHDYQTKKNQAVRFLNEGDKVKASLRFKGRQMAHRDLGYNIINRLIQDIGDA 132
Query: 226 SVVESGPHVERKQAYAIIRHVKFGPSKK 253
VE P +E +AI+ P+KK
Sbjct: 133 GTVEFMPRMEGTTLHAIL-----APTKK 155
>gi|429205413|ref|ZP_19196690.1| translation initiation factor IF-3 [Lactobacillus saerimneri 30a]
gi|428146485|gb|EKW98724.1| translation initiation factor IF-3 [Lactobacillus saerimneri 30a]
Length = 166
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + V S+ EALA+A DLV V KA PPV +IMD+ K
Sbjct: 2 VNEGIRAREVRLIASDGSQLGVKSKQEALAMAEQQNLDLVLVAPKAKPPVARIMDYG--K 59
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ EL++K R K K + KEVR S I+ D K R + KG +V+
Sbjct: 60 YRFELQKKQREARKRQ---KTANVKEVRLSPTIDTNDFNTKVRNAHRFISKGDKVRVSIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L R + +D++ VES ++ + + ++
Sbjct: 117 FKGRAITHKDIGREVLQRFAEATQDVASVESRAKMDGRSMFLVL 160
>gi|381184391|ref|ZP_09893012.1| translation initiation factor IF-3 [Listeriaceae bacterium TTU
M1-001]
gi|380315721|gb|EIA19219.1| translation initiation factor IF-3 [Listeriaceae bacterium TTU
M1-001]
Length = 166
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ G + V S+ +AL +A + DLV V A PPV +IMD+ K +
Sbjct: 2 VNDGIRAREVRLIDQHGEQLGVKSKFDALGIAEAANLDLVLVAPNAKPPVARIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I L KEVR S I++ D K ++ ++KG +VKC
Sbjct: 62 FEQQKKEKEARKNQKVIVL-----KEVRLSPTIDEHDFNTKLRNARKFLEKGDKVKCSIR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R D +D+S VE ++ + + ++
Sbjct: 117 FKGRAITHKEIGQKVLDRFADECKDLSTVEQKAKMDGRSMFLVL 160
>gi|375101643|ref|ZP_09747906.1| translation initiation factor IF-3 [Saccharomonospora cyanea
NA-134]
gi|374662375|gb|EHR62253.1| translation initiation factor IF-3 [Saccharomonospora cyanea
NA-134]
Length = 236
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S R+N++I VRLV G +V V +AL LA+ DLVEV +A PPV K+MD
Sbjct: 52 SSETRINERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVAKLMD 111
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K ++ ++ +T+ KE + KI+ D + K V R ++ G +V
Sbjct: 112 YGKFKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDPHDYETKKGHVSRFLEAGNKV 166
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L RL D + ++ +ES P
Sbjct: 167 KVTIMFRGREQSRPELGFRLLQRLADDVSELGFIESKP 204
>gi|169656669|ref|YP_001428924.2| translation initiation factor IF-3 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|164551737|gb|ABU61968.2| translation initiation factor IF-3 [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 173
Score = 75.5 bits (184), Expect = 7e-11, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV +G + VVS +EALALA DLVE+ ANPPVC++MD
Sbjct: 10 INEQIKAKEVRLVGVDGQQIGVVSINEALALAEEADVDLVEMVANANPPVCRLMD----- 64
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y K L E+ + KA++ K+ KEV+ + D Q+K + + ++KG +VK
Sbjct: 65 YGKYLFEQGKKKAQAKKNQKQTQVKEVKLRPVTDVGDYQVKLRNLIKFLEKGDKVKVTLR 124
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ ++LG L R+ + + VVE P +E +Q ++ GP KK
Sbjct: 125 FRGREMSHKELGMEMLQRMANDAAEYGVVEHQPKLEGRQMIMVL-----GPKKK 173
>gi|58039290|ref|YP_191254.1| protein translation initiation factor 3 [Gluconobacter oxydans
621H]
gi|58001704|gb|AAW60598.1| Bacterial protein translation initiation factor 3 (IF-3)
[Gluconobacter oxydans 621H]
Length = 173
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+N++I VRL+ +EG V++ +AL A S+ DL+E+ A PPV KI+D+
Sbjct: 8 EGPRVNEEIRVPQVRLIDEEGEMQGVMTTRDALMRAFSVGLDLLEISPTAVPPVVKILDY 67
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ K+K+ A+ K + + KEV+ + D Q K + +D+G +VK
Sbjct: 68 GKFKYEQQ-KKKNEARKKQKVI----EIKEVKVRPGTGEHDFQTKLKAIHSFLDEGDKVK 122
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ +E+ + VE P +E +Q +I
Sbjct: 123 ISLRFKGREMAHQELGIKMLERIRQEVEEKAKVEQMPRLENRQMLMVI 170
>gi|403380030|ref|ZP_10922087.1| translation initiation factor IF-3 [Paenibacillus sp. JC66]
Length = 153
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 106 HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCK 165
EAL +A DLV V A PPVC+IMD+ K +Y+ + KEK+ K + + D K
Sbjct: 15 REALQIAYDANLDLVNVAPTAKPPVCRIMDYGKYRYEMQKKEKEARKNQKIV-----DLK 69
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIED 224
EVRFS IE+ D Q K V + + G +VKC G++ +G L R+ E+
Sbjct: 70 EVRFSATIEEHDFQTKLRNVTKFLKDGDKVKCSVRFRGREITHASIGQKVLERVAKESEE 129
Query: 225 ISVVESGPHVERKQAYAII 243
+ VVE P +E + I+
Sbjct: 130 LCVVERKPKLEGRSMIMIL 148
>gi|325971718|ref|YP_004247909.1| translation initiation factor IF-3 [Sphaerochaeta globus str.
Buddy]
gi|324026956|gb|ADY13715.1| Translation initiation factor IF-3 [Sphaerochaeta globus str.
Buddy]
Length = 184
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 75/122 (61%), Gaps = 7/122 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N +I A+ V ++ EG++ ++S +A+ LA S+ DLVEV ANPPVCK++D
Sbjct: 3 TKDLRINRQIRAREVFVIDAEGNQKGIMSVFDAVMLAESVGLDLVEVSPNANPPVCKVLD 62
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K +Y++E + +D K +S + + KE+R KIE+ DL+ K+ + + +G +V
Sbjct: 63 FGKYRYEQEKRLRDAKKNQSVVKM-----KEIRMQPKIERHDLETKSKFIGEFLAEGNKV 117
Query: 196 KC 197
K
Sbjct: 118 KV 119
>gi|307564490|ref|ZP_07627031.1| translation initiation factor IF-3 [Prevotella amnii CRIS 21A-A]
gi|307346850|gb|EFN92146.1| translation initiation factor IF-3 [Prevotella amnii CRIS 21A-A]
Length = 227
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K R+N++I + VR+V D G +V+ +AL LA+ DLVE+ A PPVC+
Sbjct: 2 KNDKIKMQYRVNEQIRVREVRVVSDAGAEVMPTRKALELAQEEGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHK-----EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
I+D+ K +K+QKE+K+K K D KE+RF + ++ D K +
Sbjct: 62 IIDYAKFLYQQKKHQKEMKQKQV----------KQDIKEIRFGPQTDEHDYLFKLKHAQG 111
Query: 188 LMDKGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ +G +V+ G+ KE+ E L L R + +E+++ VE P +E K+ + +
Sbjct: 112 FLKEGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYL 168
Query: 244 RHVKFGPSKKGGLKK 258
P K G +KK
Sbjct: 169 -----TPKKAGVVKK 178
>gi|294793960|ref|ZP_06759097.1| translation initiation factor IF-3 [Veillonella sp. 3_1_44]
gi|294455530|gb|EFG23902.1| translation initiation factor IF-3 [Veillonella sp. 3_1_44]
Length = 172
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ +R+V E ++ +S EALALA DLVE+ A PPV +IM++ K
Sbjct: 9 PRINEEIRARELRVVGPENEQIGIMSGREALALAEEQHLDLVEIAPNAKPPVARIMNYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + +TL KEV+ IE D +K + + +G +VK
Sbjct: 69 YRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIENHDFYVKMKNASKFLAEGNKVKVT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R + +++ + +E +E + I+
Sbjct: 124 IMFRGRELSHPELGMAVLTRFAEELKETASIEKAAKLEGRNMTMIL 169
>gi|383758308|ref|YP_005437293.1| translation initiation factor IF-3 [Rubrivivax gelatinosus IL144]
gi|381378977|dbj|BAL95794.1| translation initiation factor IF-3 InfC [Rubrivivax gelatinosus
IL144]
Length = 178
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 9/166 (5%)
Query: 82 RLNDKINAQFVRL--VLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
RLN +I A VRL V +E +V EAL +A L DLVE+ A+PPVC++MD+ K
Sbjct: 13 RLNREIMAPQVRLNGVNNEPLGIVPTMEALRMAGELDVDLVEIAATADPPVCRLMDYGKF 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM-DKGYRVKCM 198
KYQ E K+ AK+K + + KEV+F ++ D +K ++R + + G + K
Sbjct: 73 KYQ-EQKKAAEAKSKQKVI----EVKEVKFRPGTDEGDYAIKMRNLRRFIAEDGDKGKVT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +D+G L R+ D + D++VVE P +E +Q ++
Sbjct: 128 LRFRGREITHQDIGMRLLERIRDELADVAVVEHMPKLEGRQMIMVL 173
>gi|354559944|ref|ZP_08979184.1| Translation initiation factor IF-3 [Desulfitobacterium
metallireducens DSM 15288]
gi|353539458|gb|EHC08944.1| Translation initiation factor IF-3 [Desulfitobacterium
metallireducens DSM 15288]
Length = 180
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I A+ VRLV +EG + +V +AL +A DLVE+ A PPVCK MD+ K
Sbjct: 15 RINDEIRAREVRLVGEEGEQLGIVQLRDALQMAIEKSVDLVEIAPTAKPPVCKFMDYGKY 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ ++K+ A+ K T + KEV+ IE D + KA +R + G +VK
Sbjct: 75 KYEQAKRDKE-ARKKQRTT----EIKEVKLRPNIEDHDFETKARNAQRFLADGDKVKVTI 129
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ +LG L RL + + + +E P +E + I+ +K
Sbjct: 130 MFRGREVTHPELGKKLCVRLAEFCKAEANIEREPKLEGRNMIMILTPIK 178
>gi|325269094|ref|ZP_08135715.1| translation initiation factor IF3 [Prevotella multiformis DSM
16608]
gi|324988715|gb|EGC20677.1| translation initiation factor IF3 [Prevotella multiformis DSM
16608]
Length = 226
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 22/186 (11%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK--- 138
R+N++I + VR+V D+G +V+ +AL LA DLVE+ A PPVC+I+D+ K
Sbjct: 11 RVNEQIRVREVRVVSDDGAEVMPTRKALDLAHKQGVDLVEISPNAQPPVCRIIDYSKFLY 70
Query: 139 --EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
+K+QKE+K+K K + KE+RF + ++ D K + ++ G +V+
Sbjct: 71 QQKKHQKEMKQKQV----------KQEVKEIRFGPQTDEHDYNFKLKHAQEFLNAGNKVR 120
Query: 197 CMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
G+ KE+ E L L R + +E+++ VE P +E K+ + + K G K
Sbjct: 121 AYVFFRGRSILFKEQGEVL---LLRFANDLEELAKVEQLPKLEGKKMFLYLAPKKVGIVK 177
Query: 253 KGGLKK 258
K K+
Sbjct: 178 KSQQKR 183
>gi|262369845|ref|ZP_06063172.1| chain initiation factor IF-3 [Acinetobacter johnsonii SH046]
gi|262314884|gb|EEY95924.1| chain initiation factor IF-3 [Acinetobacter johnsonii SH046]
Length = 165
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRLV + G + +VS EAL A S++ DLVE+ A PPVCKIMDF+K
Sbjct: 1 MNDEIRAKEVRLVDENGEQKGIVSLAEALRAAESVELDLVEIVANAEPPVCKIMDFNKHL 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ + K+K+ K + + + KE++ + D +K + + +++G +VK
Sbjct: 61 FDLKQKQKEAKKKQHQVQV-----KEIKLRPGTDVGDYNVKLRAITKFLEEGNKVKITLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L ++ + D+ VVE P +E +Q ++ GP KK
Sbjct: 116 FRGREMAHQQLGLAQLQKVEADVADLGVVEQAPKMEGRQMGMLL-----GPKKK 164
>gi|15639836|ref|NP_219286.1| translation initiation factor IF-3 [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189026074|ref|YP_001933846.1| translation initiation factor IF-3 [Treponema pallidum subsp.
pallidum SS14]
gi|384422342|ref|YP_005631701.1| translation initiation factor IF-3 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502702|ref|YP_006870146.1| initiation factor IF3 [Treponema pallidum subsp. pallidum str.
Mexico A]
gi|6016326|sp|O83822.1|IF3_TREPA RecName: Full=Translation initiation factor IF-3
gi|238689348|sp|B2S488.1|IF3_TREPS RecName: Full=Translation initiation factor IF-3
gi|3323163|gb|AAC65816.1| translation initiation factor 3 (infC) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018649|gb|ACD71267.1| translation initiation factor 3 [Treponema pallidum subsp. pallidum
SS14]
gi|291060208|gb|ADD72943.1| translation initiation factor IF-3 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408476065|gb|AFU66830.1| initiation factor IF3 [Treponema pallidum subsp. pallidum str.
Mexico A]
Length = 179
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N I + VRLV G + VV EAL +AR + DLVEV +A+PPVCKI+D+ K
Sbjct: 14 RINGSIRVREVRLVDAVGQQCGVVPTPEALRMARDINLDLVEVAPQASPPVCKILDYGKY 73
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+++ K +D K + TL KEVR KI D+ KA ++R +D+G +VK
Sbjct: 74 RFEMGKKLRDSKKRQRLQTL-----KEVRMQPKINDHDMAFKAKHIQRFLDEGDKVKVTI 128
Query: 200 LPVGKKEETEDLG-----GYLSRLI 219
G++ DLG L RL+
Sbjct: 129 RFRGRELAHTDLGFNVLQNVLGRLV 153
>gi|392421571|ref|YP_006458175.1| translation initiation factor IF-3 [Pseudomonas stutzeri CCUG
29243]
gi|390983759|gb|AFM33752.1| translation initiation factor IF-3 [Pseudomonas stutzeri CCUG
29243]
Length = 177
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ +N+ I+A+ VRL+ +G ++ VS EAL +A + DLVE+ ANPP
Sbjct: 2 RQDKRAAPKAPINENISAREVRLIGADGEQIGIVSIDEALQVAEEAKLDLVEISADANPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KEV+F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQVAAAKKNQKQIQVKEVKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
G R K G++ ++LG L R+ + + + VE P +E +Q +I
Sbjct: 117 SDGDRAKVSLRFRGREMAHQELGMELLKRVENDLAEYGSVEQHPKMEGRQLIMVI----- 171
Query: 249 GPSKK 253
P KK
Sbjct: 172 APKKK 176
>gi|319790150|ref|YP_004151783.1| translation initiation factor IF-3 [Thermovibrio ammonificans HB-1]
gi|317114652|gb|ADU97142.1| translation initiation factor IF-3 [Thermovibrio ammonificans HB-1]
Length = 142
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 106 HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCK 165
++AL LAR DLVEV ANPPVC+IMDF K KYQ + K + K + + + K
Sbjct: 4 YKALELARDKGLDLVEVSPNANPPVCRIMDFGKYKYQMQKKMHEAKKKQKTV-----EVK 58
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIED 224
V+ K ++ D+Q++ V+R ++KG +VK + + G+++ ++G L ++ + ++D
Sbjct: 59 TVKVRPKTDEHDMQVRIKQVRRFIEKGDKVKAVVMFRGREQAHLEIGEAQLMKIYEAVKD 118
Query: 225 ISVVESGPHVERKQAYAII 243
I+ +E P E + I+
Sbjct: 119 IAEMERKPKKEGRDMIMIL 137
>gi|324998029|ref|ZP_08119141.1| translation initiation factor IF-3 [Pseudonocardia sp. P1]
Length = 178
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV G +V V +AL LA+ DLVEV +A PPVCK+MD+ K KY+ K ++
Sbjct: 4 VRLVGPNGEQVGIVRIEDALRLAQDADLDLVEVAGQARPPVCKLMDYGKFKYESAQKARE 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
++ +T+ KE + KI++ D + K V+R ++ G +VK + G+++
Sbjct: 64 -SRRNQQLTV----IKEQKLRPKIDKHDYETKRGHVRRFLEGGNKVKVTIMFRGREQSRP 118
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L RL + I DI+VVE+ P
Sbjct: 119 ELGYRLLQRLAEDIGDIAVVEAAP 142
>gi|15606839|ref|NP_214219.1| translation initiation factor IF-3 [Aquifex aeolicus VF5]
gi|6016323|sp|O67653.1|IF3_AQUAE RecName: Full=Translation initiation factor IF-3
gi|2984082|gb|AAC07621.1| initiation factor IF-3 [Aquifex aeolicus VF5]
Length = 175
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 6/157 (3%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ RL+ + G ++ V EAL +A DLVE+ +A PPVCKIMD+ K
Sbjct: 8 RVNRQIRAKECRLIDENGQQIGIVPIEEALKIAEEKGLDLVEIAPQAKPPVCKIMDYGKF 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ + KE++ K + + + + K++R +I++ DLQ+K ++ +++G +VK
Sbjct: 68 KYELKKKEREARKKQREHQI---EVKDIRMKVRIDEHDLQVKLKHMREFLEEGDKVKVWL 124
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVE 235
G++ +LG L+ R+I+ + DI+ VE P E
Sbjct: 125 RFRGRENIYPELGKKLAERIINELSDIAEVEVQPKKE 161
>gi|414153041|ref|ZP_11409368.1| Translation initiation factor IF-3 [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411455423|emb|CCO07270.1| Translation initiation factor IF-3 [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 156
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
++S EAL LA Q DLVEV +A PPVC+IMD+ K KY++ +EK+ K + I +
Sbjct: 11 IMSVKEALRLAEERQLDLVEVAPQAKPPVCRIMDYGKFKYEQSKREKEAKKKQRIIQV-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KEV+ +IE+ D +KA +R + G +VK + G++ +LG L RL +
Sbjct: 69 ---KEVKLRPRIEEHDYIVKAKNAERFLKDGDKVKVTIMFRGREIVHTELGKKLLDRLAE 125
Query: 221 LIEDISVVESGPHVERKQAYAII 243
++++ +VE +E K I+
Sbjct: 126 DLKELCLVERQAKLEGKNMIMIL 148
>gi|219666284|ref|YP_002456719.1| translation initiation factor IF-3 [Desulfitobacterium hafniense
DCB-2]
gi|219536544|gb|ACL18283.1| translation initiation factor IF-3 [Desulfitobacterium hafniense
DCB-2]
Length = 198
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 8/169 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I A+ VRLV +EG + +V +A +A DLVE+ A PPVCKIMD+ K
Sbjct: 33 RINDEIRAREVRLVGEEGEQLGIVQLRDAQRIAAEKSLDLVEIAPTAKPPVCKIMDYGKY 92
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ ++K+ K + K + KEV+ IE D + KA +R ++ G +VK
Sbjct: 93 KYEQAKRDKEARKKQ-----KTMEIKEVKLRPNIEDHDFETKARNAQRFLNDGDKVKVTI 147
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ +LG L RL + + + +E P +E + I+ VK
Sbjct: 148 MFRGREVTHPELGRTLCLRLAEFCKAEANIERDPKLEGRNMIMILAPVK 196
>gi|111115013|ref|YP_709631.1| translation initiation factor IF-3 [Borrelia afzelii PKo]
gi|216263783|ref|ZP_03435777.1| translation initiation factor IF-3 [Borrelia afzelii ACA-1]
gi|384206689|ref|YP_005592410.1| translation initiation factor IF-3 [Borrelia afzelii PKo]
gi|410678943|ref|YP_006931345.1| translation initiation factor IF-3 [Borrelia afzelii HLJ01]
gi|123047048|sp|Q0SNX3.1|IF3_BORAP RecName: Full=Translation initiation factor IF-3
gi|110890287|gb|ABH01455.1| translation initiation factor 3 [Borrelia afzelii PKo]
gi|215979827|gb|EEC20649.1| translation initiation factor IF-3 [Borrelia afzelii ACA-1]
gi|342856572|gb|AEL69420.1| translation initiation factor IF-3 [Borrelia afzelii PKo]
gi|408536331|gb|AFU74462.1| translation initiation factor IF-3 [Borrelia afzelii HLJ01]
Length = 186
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
++N +I A+ VR++ + G +V+S +A+ A+ DLVEV +PPVCKI+D+ K K
Sbjct: 21 KINYRIKAREVRVIFENGTQEVLSIEDAIKKAKEAGLDLVEVSPNVSPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K+ + + G +VK
Sbjct: 81 FHQEKRQKEQKKNQKVIKL-----KEVRMQPKIDTHDLDFKSKNILSFLKDGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L+ +++ + D++ V+ES +E K + I+
Sbjct: 136 FRGRELAHTYLGYGILNSILEKVGDVNYVLESAAKMEGKTMFLIV 180
>gi|218296413|ref|ZP_03497156.1| translation initiation factor IF-3 [Thermus aquaticus Y51MC23]
gi|218243207|gb|EED09738.1| translation initiation factor IF-3 [Thermus aquaticus Y51MC23]
Length = 157
Score = 75.1 bits (183), Expect = 9e-11, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 85/147 (57%), Gaps = 10/147 (6%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+R++ +G + ++ EAL LAR DLV V A PPV +IM++ K +Y++++ EK+
Sbjct: 1 MRVIGADGQQLGIMDTQEALRLAREQDLDLVLVGPTAEPPVARIMNYSKWRYEQQVAEKE 60
Query: 150 -RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEET 208
R KA K+ + K ++F KI+ D Q K + +KR +++G++VK + G++
Sbjct: 61 ARKKA------KRTEVKSIKFRVKIDDHDYQTKLNHIKRFLEEGHKVKVTIMFRGREMSY 114
Query: 209 EDLGG-YLSRLIDLIEDISVVESGPHV 234
+LG L R+ +E ++VVE P +
Sbjct: 115 PELGQRLLERVAKDLEGLAVVEMKPEL 141
>gi|217976828|ref|YP_002360975.1| translation initiation factor IF-3 [Methylocella silvestris BL2]
gi|217502204|gb|ACK49613.1| translation initiation factor IF-3 [Methylocella silvestris BL2]
Length = 175
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+N I A+ V+L+ EG VV EAL A DLVE+ ANPPVCKI+
Sbjct: 8 QKDGPRVNRDIRAREVQLIDAEGQNRGVVDSLEALQSAEEAGLDLVEIVPTANPPVCKIL 67
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K ++ E K+ A+ K I + KE++ I++ D K V+R ++G +
Sbjct: 68 DYGKFRFL-EQKKSAEARKKQKIV----EIKEIKLRPGIDEHDYDTKMKAVRRFFEEGDK 122
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + I+ VE+ P +E +Q ++
Sbjct: 123 VKVTLRFRGREMAHQDLGFRLLERVKNETVTIAKVEAEPSMEGRQMVMVL 172
>gi|223889247|ref|ZP_03623835.1| translation initiation factor IF-3 [Borrelia burgdorferi 64b]
gi|225549824|ref|ZP_03770788.1| translation initiation factor IF-3 [Borrelia burgdorferi 118a]
gi|223885280|gb|EEF56382.1| translation initiation factor IF-3 [Borrelia burgdorferi 64b]
gi|225369632|gb|EEG99081.1| translation initiation factor IF-3 [Borrelia burgdorferi 118a]
Length = 186
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
++N +I A+ VR+V + G +V+S +A+ A+ DLVEV +PPVCKI+D+ K K
Sbjct: 21 KINYRIKAREVRVVFENGTQEVLSIEDAIKKAKEAGLDLVEVSPNVSPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K+ + + G +VK
Sbjct: 81 FHQEKRQKEQKKNQKVIKL-----KEVRMQPKIDAHDLDFKSKNILGFLKDGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L+ +++ + D++ V+ES +E K + I+
Sbjct: 136 FRGRELAHTYLGYGILNSILEKVGDVNYVLESAAKMEGKTMFLIV 180
>gi|357386713|ref|YP_004901437.1| translation initiation factor 3 [Pelagibacterium halotolerans B2]
gi|351595350|gb|AEQ53687.1| translation initiation factor 3 [Pelagibacterium halotolerans B2]
Length = 171
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N++IN V+L+ EG VV EA+A+A DLVE+ + PPVCKI+
Sbjct: 4 QKDGPRSNNEINVPEVQLINAEGTNIGVVRTSEAIAMAMDAGMDLVEIAPNSTPPVCKIL 63
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KY + K + K + I + KE++ I+ D +K +++ + +G +
Sbjct: 64 DLGKFKYAAQKKAAEARKKQKVI-----EVKEIKLRPNIDTHDYDVKMRALEKFIGEGDK 118
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +++G L ++ D E+I+ VES P E +Q ++
Sbjct: 119 VKVTMRFRGREMAHQNIGLELLHKVKDQFEEITKVESNPRAEGRQMVMVL 168
>gi|261749265|ref|YP_003256950.1| translation initiation factor 3 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497357|gb|ACX83807.1| translation initiation factor 3 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 167
Score = 75.1 bits (183), Expect = 9e-11, Method: Composition-based stats.
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 80 GPRLNDKINAQFVRLV---LDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
G R+N IN+ VRLV ++ G + S +AL AR + DLVE++ K +PPVCKI+D
Sbjct: 2 GHRINAYINSDQVRLVGNIVENG--IYSIQDALQFARDKELDLVEINPKVDPPVCKILD- 58
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
Y+K L E+ + K + K + KE+RF +I D ++K + ++ + +G +VK
Sbjct: 59 ----YKKFLYEQKKKKKQFKAKQIKVNTKEIRFGPQIGDHDGKVKIKSAEKFLMRGDKVK 114
Query: 197 CMALPVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
G+ +D G L + + IE+ VE P +E K+ Y I+ KF
Sbjct: 115 VFVFFKGRSIVYKDQGKIKLLKFAEEIEEYGKVEQMPVMEGKRMYMILAPKKF 167
>gi|296117436|ref|ZP_06836024.1| translation initiation factor IF-3 [Gluconacetobacter hansenii ATCC
23769]
gi|295976038|gb|EFG82828.1| translation initiation factor IF-3 [Gluconacetobacter hansenii ATCC
23769]
Length = 173
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+N++I VRL+ +G ++ +ALA A + DL+E+ A PPV KI+D+
Sbjct: 8 EGPRVNEEIRVPQVRLIDADGEMLGIMPMRDALARAYASGLDLLEISPNAEPPVAKILDY 67
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ K+++ A+ K + + KEV+ I++ D Q+K +K + +G +VK
Sbjct: 68 GKFKYEQQ-KKRNEARKKQKVI----EIKEVKVRPNIDENDYQVKMRAMKSFIGEGDKVK 122
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ +++I+ VE P +E +Q ++
Sbjct: 123 VTLRFRGREMAHQDLGIKVLERVRSEMDEIAKVEHMPKLENRQMIMVL 170
>gi|7387793|sp|Q9X1S6.2|IF3_THEMA RecName: Full=Translation initiation factor IF-3
Length = 172
Score = 75.1 bits (183), Expect = 9e-11, Method: Composition-based stats.
Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 11/170 (6%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T PR N++I A VR+V + G V+ +AL LAR DLV V NPPV +IMD
Sbjct: 7 TDLPR-NEQIKAPKVRVVDENGKMIGVMPTRKALELAREKGLDLVLVAPNENPPVARIMD 65
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KYQ L +K + K + + K+++F KI++ D Q K ++R ++ G++V
Sbjct: 66 YGKYKYQ--LTKKQKENKKKPVQM-----KQMKFRLKIDEHDYQTKVKHIRRFLEDGHKV 118
Query: 196 KCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
+ + + +G++ + G L R+I ED++ VES P +E + + +++
Sbjct: 119 RVVVMFIGREMMFAEKGKEILERVIKDTEDLATVESPPKMEGRDMWMVLK 168
>gi|303230813|ref|ZP_07317560.1| translation initiation factor IF-3 [Veillonella atypica
ACS-049-V-Sch6]
gi|401679381|ref|ZP_10811312.1| translation initiation factor IF-3 [Veillonella sp. ACP1]
gi|302514573|gb|EFL56568.1| translation initiation factor IF-3 [Veillonella atypica
ACS-049-V-Sch6]
gi|400219602|gb|EJO50466.1| translation initiation factor IF-3 [Veillonella sp. ACP1]
Length = 184
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 13/187 (6%)
Query: 60 VRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQC 117
+RFF + + K K+T PR+N++I A+ +R+V E ++ +S EALALA
Sbjct: 5 IRFF---ILLEVKAISKDT--PRINEEIRARELRVVGPENEQIGIMSGREALALAEEKHL 59
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVE+ A PPV +IM++ K +Y+++ +EK+ K + +TL KEV+ IE D
Sbjct: 60 DLVEIAPNAKPPVARIMNYGKYRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIEDHD 114
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVER 236
+K + + +G +VK + G++ +LG L+R + +++ + +E +E
Sbjct: 115 FYVKMKNASKFLGEGNKVKVTIMFRGRELSHPELGMAVLTRFAEELKETASIEKAAKLEG 174
Query: 237 KQAYAII 243
+ I+
Sbjct: 175 RNMTMIL 181
>gi|227530472|ref|ZP_03960521.1| translation initiation factor IF3 [Lactobacillus vaginalis ATCC
49540]
gi|227349577|gb|EEJ39868.1| translation initiation factor IF3 [Lactobacillus vaginalis ATCC
49540]
Length = 170
Score = 75.1 bits (183), Expect = 9e-11, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 8/161 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ +G + + S+ EAL LA DLV V KA P V +IMD+ K +
Sbjct: 3 VNNGIRAREVRLIGQDGEQLGIKSKREALQLAEDANLDLVLVAPKARPAVARIMDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ + KE++ K + +T+ KE+R S I+ D +K V++ ++KG +V+
Sbjct: 63 YEMQKKEREARKKQKTVTV-----KEIRLSPSIDTNDFNVKLKRVRKFIEKGDKVRVSLR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAY 240
G+ +D+G + R+ EDI+ V P +E + +
Sbjct: 118 FRGRAITHKDIGRDMIERMAKETEDIATVVQRPKMEGRSIF 158
>gi|160883805|ref|ZP_02064808.1| hypothetical protein BACOVA_01777 [Bacteroides ovatus ATCC 8483]
gi|262407691|ref|ZP_06084239.1| translation initiation factor IF-3 [Bacteroides sp. 2_1_22]
gi|294643799|ref|ZP_06721597.1| translation initiation factor IF-3 [Bacteroides ovatus SD CC 2a]
gi|294808459|ref|ZP_06767212.1| translation initiation factor IF-3 [Bacteroides xylanisolvens SD CC
1b]
gi|345511836|ref|ZP_08791375.1| translation initiation factor IF-3 [Bacteroides sp. D1]
gi|156110890|gb|EDO12635.1| translation initiation factor IF-3 [Bacteroides ovatus ATCC 8483]
gi|229443726|gb|EEO49517.1| translation initiation factor IF-3 [Bacteroides sp. D1]
gi|262354499|gb|EEZ03591.1| translation initiation factor IF-3 [Bacteroides sp. 2_1_22]
gi|292640888|gb|EFF59108.1| translation initiation factor IF-3 [Bacteroides ovatus SD CC 2a]
gi|294444387|gb|EFG13101.1| translation initiation factor IF-3 [Bacteroides xylanisolvens SD CC
1b]
Length = 203
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 22/204 (10%)
Query: 82 RLNDKINAQFVRLVLDEGH-KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N++I A+ VR+V D+ KV +AL +A + DLVE+ A PPVC+I+D+ K
Sbjct: 11 RINEQIRAKEVRIVSDDIEPKVYPIFQALKMAEERELDLVEISPNAQPPVCRIIDYSKFL 70
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ + ++K++ KAK K + KE+RF + + D K K ++ G +VK
Sbjct: 71 YQLKKRQKEQ-KAKQ----VKVNVKEIRFGPQTDDHDYNFKLKHAKGFLEDGDKVKAYVF 125
Query: 201 PVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGL 256
G+ KE+ E L L R + +ED + V+ P +E K+ ++ P KK
Sbjct: 126 FKGRSILFKEQGEVL---LLRFANDLEDYAKVDQMPILEGKRM-----TIQLSPKKKEAS 177
Query: 257 KKLKAVGDTSGVSKAATPSSTIER 280
KK T+G K A P+ E+
Sbjct: 178 KK----PATAGTPKPAAPAQKAEK 197
>gi|313144951|ref|ZP_07807144.1| translation initiation factor IF-3 [Helicobacter cinaedi CCUG
18818]
gi|386761404|ref|YP_006235039.1| translation initiation factor IF-3 [Helicobacter cinaedi PAGU611]
gi|313129982|gb|EFR47599.1| translation initiation factor IF-3 [Helicobacter cinaedi CCUG
18818]
gi|385146420|dbj|BAM11928.1| translation initiation factor IF-3 [Helicobacter cinaedi PAGU611]
gi|396079188|dbj|BAM32564.1| translation initiation factor IF-3 [Helicobacter cinaedi ATCC
BAA-847]
Length = 174
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++IN + VR V D G + ++S EAL LA DLV + A PPVCKIMD+ K +
Sbjct: 8 LNEEINFKEVRCVGDNGEVYGIISSKEALNLANQAGLDLVLISPNAKPPVCKIMDYGKFR 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ E K+K+ K + I + KE++ S +I Q D+ K ++ G VK +
Sbjct: 68 YQAEKKQKEARKKQKQI-----EIKEIKLSTQIAQNDINYKVKHAIEFLESGKHVK-FKV 121
Query: 201 PVGKKEETEDLGGY--LSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ ++E + G L ++ ++EDI+V + P +E K +V + P KK
Sbjct: 122 FLKQRELSIPQAGMDTLHKVAAMLEDIAVADKEPKLEGKYL-----NVLYVPKKK 171
>gi|255026967|ref|ZP_05298953.1| translation initiation factor IF-3 [Listeria monocytogenes FSL
J2-003]
Length = 167
Score = 75.1 bits (183), Expect = 9e-11, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ +G + V + +AL +A DLV V A PPV +IMD+ K +
Sbjct: 3 VNDGIRAREVRLIDQDGEQLGVKXKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+K+ K + I + KEVR S I++ D K ++ ++KG +VKC
Sbjct: 63 FEQQKKDKEARKNQKVIVM-----KEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R ED+ +E P ++ + + ++
Sbjct: 118 FKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFLVL 161
>gi|421887919|ref|ZP_16319047.1| Translation initiation factor IF-3 [Ralstonia solanacearum K60-1]
gi|378966728|emb|CCF95795.1| Translation initiation factor IF-3 [Ralstonia solanacearum K60-1]
Length = 183
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A +RL EG + +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 18 RINREITAPEIRLTGVEGEQLGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ AK K + KEV+F + D ++K +KR +D+G R K
Sbjct: 78 KYQ-EQKKAHEAKLKQKVI----QVKEVKFRPGTDDGDYEVKLRNLKRFLDEGDRTKITL 132
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +++G L RL +E+ VE P +E +Q ++
Sbjct: 133 RFRGREMAHQEIGARMLDRLKTDLEEFGQVEQMPKMEGRQMVMML 177
>gi|351732420|ref|ZP_08950111.1| translation initiation factor IF-3 [Acidovorax radicis N35]
Length = 158
Score = 75.1 bits (183), Expect = 9e-11, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
EAL +A L DLVE+ ANPPVC++MD+ K KYQ E K AKAK + + KE
Sbjct: 2 EALRMAGELDVDLVEIAATANPPVCRLMDYGKFKYQ-EQKRAAEAKAKQTVI----EIKE 56
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDI 225
V+F + D +K ++R + G + K G++ ++LG L+R+ D + D
Sbjct: 57 VKFRPGTDDGDYNIKMRNIRRFLADGDKCKITLRFRGREITHQELGLALLNRIRDELADS 116
Query: 226 SVVESGPHVERKQAYAII 243
++E P +E +Q +I
Sbjct: 117 IIIEQFPKLEGRQMIMMI 134
>gi|384439314|ref|YP_005654038.1| translation initiation factor IF-3 [Thermus sp. CCB_US3_UF1]
gi|359290447|gb|AEV15964.1| Translation initiation factor IF-3 [Thermus sp. CCB_US3_UF1]
Length = 157
Score = 75.1 bits (183), Expect = 9e-11, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 87/147 (59%), Gaps = 10/147 (6%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+R++ +G + ++ EAL LA+ DLV V A+PPV +IMD+ K +Y++++ EK+
Sbjct: 1 MRVIGSDGQQLGIMDTREALRLAQEQDLDLVLVGPTADPPVARIMDYSKWRYEQQVAEKE 60
Query: 150 -RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEET 208
R KA K+ + K ++F KI+ D Q K + +KR +++G++VK + G++
Sbjct: 61 ARKKA------KRTEVKSIKFRVKIDNHDYQTKLNHIKRFLEEGHKVKVTIMFRGREMSH 114
Query: 209 EDLG-GYLSRLIDLIEDISVVESGPHV 234
+LG L R+ + ++ ++VVE P +
Sbjct: 115 PELGEKLLERVAEDLKGLAVVEMRPEL 141
>gi|226355497|ref|YP_002785237.1| translation initiation factor IF-3 [Deinococcus deserti VCD115]
gi|259491504|sp|C1D0V9.1|IF3_DEIDV RecName: Full=Translation initiation factor IF-3
gi|226317487|gb|ACO45483.1| putative translation initiation factor IF-3 [Deinococcus deserti
VCD115]
Length = 210
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + +RL+ EG ++ + +A+ +AR DLV V +A PPVC+++D+ +
Sbjct: 9 KVNEQIRVRQIRLIGGEGEQIGIIDTRDAMNMAREKGLDLVMVSPQAVPPVCRLLDYGRF 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ EK+ K ++ + K ++F KI+ D + K V+R +D G++VK
Sbjct: 69 RYEQQQNEKENRK-----RVRSQEVKAIKFRVKIDDHDFKTKTGHVRRFLDDGHKVKVTI 123
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + + D+ E P
Sbjct: 124 MFRGRERTHPELGERILVRVAEALADVGTPEGMP 157
>gi|126652713|ref|ZP_01724874.1| translation initiation factor IF-3 [Bacillus sp. B14905]
gi|126590562|gb|EAZ84680.1| translation initiation factor IF-3 [Bacillus sp. B14905]
Length = 167
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +RL+ G + V +R+EAL +A + DLV V +A PPV +IMD+ K K
Sbjct: 3 VNEGIRARELRLIDHNGDQLGVKTRNEALEIAARVNLDLVLVAPQAKPPVARIMDYGKFK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + I + KEVR S I++ D Q K + ++KG +VKC
Sbjct: 63 FEQQKKDREIRKNQKVIVM-----KEVRLSPSIDEHDFQTKLRNAIKFLEKGDKVKCSLR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
G+ +D+G L R + ++S VE P +E + + +++
Sbjct: 118 FKGRAITHKDIGQRVLDRFAEACAEVSTVEQKPKMEGRSMFLVLQ 162
>gi|77462485|ref|YP_351989.1| translation initiation factor IF-3 [Rhodobacter sphaeroides 2.4.1]
gi|126461362|ref|YP_001042476.1| translation initiation factor IF-3 [Rhodobacter sphaeroides ATCC
17029]
gi|77386903|gb|ABA78088.1| bacterial translation initiation factor 3 (bIF-3) [Rhodobacter
sphaeroides 2.4.1]
gi|126103026|gb|ABN75704.1| bacterial translation initiation factor 3 (bIF-3) [Rhodobacter
sphaeroides ATCC 17029]
Length = 194
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 10/170 (5%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+N++I VRL+ G VV+ A+ +A DLVE+ A PPVCKIMDF
Sbjct: 27 TGPRVNERIRCPEVRLIGANGENIGVVTPSRAMMMAEEAGLDLVEISPNAEPPVCKIMDF 86
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KE++F + D +K +V + + +G +VK
Sbjct: 87 GKFKYEQQKREAE-ARKKQHII----EIKEIKFRPGTDTHDYDVKMRSVLKFLSEGDKVK 141
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISV--VESGPHVERKQAYAII 243
G++ ++LG L+R+ + + VE+ P +E +Q +I
Sbjct: 142 VTLRFRGREMAHQELGLELLNRVAAHVSEAEAGKVEAMPKLEGRQMVMMI 191
>gi|410693586|ref|YP_003624207.1| protein chain initiation factor IF-3 [Thiomonas sp. 3As]
gi|294340010|emb|CAZ88374.1| protein chain initiation factor IF-3 [Thiomonas sp. 3As]
Length = 165
Score = 75.1 bits (183), Expect = 9e-11, Method: Composition-based stats.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N +I +RLV +G VVS EAL LA DLVE+ A+PPVC++MD+ K K
Sbjct: 1 MNREITLPELRLVGPDGEALGVVSLTEALRLAEQHDVDLVEIAPTASPPVCRLMDYGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ E K+ A+AK K+ KEV+F + D Q+K ++R +++G + K
Sbjct: 61 YE-EQKKNHEARAKQ----KQIQIKEVKFRPATDDGDYQIKLRNLRRFLEEGDKGKVSLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +D+G L R+ +ED+ VE P +E +Q +I
Sbjct: 116 FRGREITHQDIGMRVLERVKADVEDVGQVEQMPKLEGRQMIMVI 159
>gi|169829541|ref|YP_001699699.1| translation initiation factor IF-3 [Lysinibacillus sphaericus
C3-41]
gi|168994029|gb|ACA41569.1| Translation initiation factor IF-3 [Lysinibacillus sphaericus
C3-41]
Length = 167
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +RL+ G + V +R+EAL +A + DLV V +A PPV +IMD+ K K
Sbjct: 3 VNEGIRARELRLIDHNGDQLGVKTRNEALEIAARVNLDLVLVAPQAKPPVARIMDYGKFK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + I + KEVR S I++ D Q K + ++KG +VKC
Sbjct: 63 FEQQKKDREIRKNQKVIVM-----KEVRLSPTIDEHDFQTKLRNAIKFLEKGDKVKCSLR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
G+ +D+G L R + ++S VE P +E + + +++
Sbjct: 118 FKGRAITHKDIGQRVLDRFAEACAEVSTVEQKPKMEGRSMFLVLQ 162
>gi|139437957|ref|ZP_01771510.1| Hypothetical protein COLAER_00496 [Collinsella aerofaciens ATCC
25986]
gi|133776154|gb|EBA39974.1| translation initiation factor IF-3 [Collinsella aerofaciens ATCC
25986]
Length = 189
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 14/187 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I A RL+ +G ++ + +A +A DLVE+ A PPVCK+MD+ K
Sbjct: 13 RINDEITASSCRLIGVDGSQLGLFAIRDAQRVADDQGLDLVEIAPNAEPPVCKVMDYGKF 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ +K K K +S + + KE++F KI+ D + K V R + KG RVK
Sbjct: 73 KYQQAMKAKAARKNQSKV-----EVKEMKFRPKIDVGDYETKKGHVLRFLKKGARVKITI 127
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKK 258
+ G++ + G L RL + ++ + VES P +E + ++ + KG +
Sbjct: 128 MFRGREMAHPEQGLNVLERLAEDLKPYATVESKPKMEGRNMLMLLAPI------KGAFDE 181
Query: 259 LKAVGDT 265
KA DT
Sbjct: 182 DKAASDT 188
>gi|311742378|ref|ZP_07716187.1| translation initiation factor IF3 [Aeromicrobium marinum DSM 15272]
gi|311314006|gb|EFQ83914.1| translation initiation factor IF3 [Aeromicrobium marinum DSM 15272]
Length = 225
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +AL LA DLVEV A PPVC++MD+ K
Sbjct: 2 RVNERIRVPEVRLVGPGGEQVGIVRIEDALRLAAESDLDLVEVAPTARPPVCRLMDYGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ + +++ + KE++ KI+Q D K V R + G +VK
Sbjct: 62 KYEAAQKARESRRNQTNTVI-----KEMKLRPKIDQHDYDTKKGHVVRFLKAGDKVKITI 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ G+++ +LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 117 MFRGREQHRPELGFRLLQRLAADVEDLGFIESHPRQDGRNMTMVL-----GPLKK 166
>gi|319403531|emb|CBI77112.1| translation initiation factor IF-3 [Bartonella rochalimae ATCC
BAA-1498]
Length = 164
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N I V+L+ DEG +V+ EAL++A DLVE+ A PPVCKI+D K
Sbjct: 2 RSNHDIRVPRVQLINDEGQHQGIVTTQEALSMAAEAGLDLVEIVPNAEPPVCKIIDLGKL 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ + K + K + I + KE++ ++ D ++K ++R +D G +VK
Sbjct: 62 KYQNQKKAAETRKKQKII-----EIKEIKMRPNVDIHDYEVKLKAIRRFIDNGDKVKITL 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ + +I+ +ES P E +Q +I
Sbjct: 117 RFRGREMAHQDLGIKLLQRVKENTSEIAKIESEPKFEGRQIMMVI 161
>gi|406968789|gb|EKD93567.1| hypothetical protein ACD_28C00115G0007 [uncultured bacterium]
Length = 180
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 24/189 (12%)
Query: 59 NVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLD--EGHKVVSRHEALALARSLQ 116
N+RF A + R+ND+I A+ VRL+ D E + S +A LA +
Sbjct: 8 NIRFIAKAL--------------RVNDQIRARTVRLIDDNDEQLGIKSIEDARRLATEKE 53
Query: 117 CDLVEVDRKANPPVCKIMDFHKEKY-QKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQ 175
DLVEV NPPVCK+MD+ K Y QK+L++K RAK+ KK + K +R S + +
Sbjct: 54 TDLVEVAPNVNPPVCKLMDYGKYLYRQKKLEQKQRAKS------KKSEVKGIRLSLRTDT 107
Query: 176 KDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHV 234
DL+ K K+ + G+ +K + G++ DL ++++++ + +++ V+ P
Sbjct: 108 HDLETKIKKAKQFLGDGHSLKIALIFKGRELSHFDLAVEKMNKVVNALTEVAKVDQPPKK 167
Query: 235 ERKQAYAII 243
+ +AI+
Sbjct: 168 QGYNLFAIL 176
>gi|381179987|ref|ZP_09888832.1| bacterial translation initiation factor 3 (bIF-3) [Treponema
saccharophilum DSM 2985]
gi|380768083|gb|EIC02077.1| bacterial translation initiation factor 3 (bIF-3) [Treponema
saccharophilum DSM 2985]
Length = 173
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 80 GPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
G R+N++I + VRL+ +EG ++++ EAL LA+ DLVEV ANPPVCKI D+
Sbjct: 6 GLRINEQIRVREVRLIDEEGGQNRIMPTIEALKLAKERDLDLVEVSPNANPPVCKISDYG 65
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K K+++E + +D K + + + KE+R KI DL KA V+ +++G +VK
Sbjct: 66 KYKFEQEKRLRDSRKNQKALKI-----KEIRMQPKIGPGDLDTKAKHVQEFLNEGNKVKV 120
Query: 198 MALPVGKKEETEDLG 212
G++ +LG
Sbjct: 121 TIRFRGRELAHTELG 135
>gi|319406445|emb|CBI80085.1| translation initiation factor IF-3 [Bartonella sp. 1-1C]
Length = 164
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N I V+L+ DEG +V+ EAL++A DLVE+ A PPVCKI+D K
Sbjct: 2 RSNHDIRVPRVQLINDEGQHQGIVTTQEALSMAADAGLDLVEIVPNAEPPVCKIIDLGKL 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ + K + K + I + KE++ ++ D ++K ++R +D G +VK
Sbjct: 62 KYQNQKKAAETRKKQKII-----EIKEIKMRPNVDIHDYEVKLKAIRRFIDNGDKVKITL 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ + +I+ +ES P E +Q +I
Sbjct: 117 RFRGREMAHQDLGIKLLQRVKENTSEIAKIESEPKFEGRQIMMVI 161
>gi|424835778|ref|ZP_18260437.1| translation initiation factor IF-3 [Clostridium sporogenes PA 3679]
gi|365977648|gb|EHN13746.1| translation initiation factor IF-3 [Clostridium sporogenes PA 3679]
Length = 184
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM++ K
Sbjct: 21 MNEQIREKEVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNYGKFV 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I + KEVR S IE D+++KA+ ++ ++ G +VK
Sbjct: 81 YEQTKKDKEAKKNQKVI-----NIKEVRLSPTIEAHDIEIKANNARKFLNAGNKVKVTVR 135
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L + +E++ V+E P +E + I+
Sbjct: 136 FRGREADYSFKGNKILKSFYEKVEELGVMEKAPKLEGRNMIMIL 179
>gi|153008139|ref|YP_001369354.1| translation initiation factor IF-3 [Ochrobactrum anthropi ATCC
49188]
gi|166198960|sp|A6WX21.1|IF3_OCHA4 RecName: Full=Translation initiation factor IF-3
gi|151560027|gb|ABS13525.1| translation initiation factor IF-3 [Ochrobactrum anthropi ATCC
49188]
Length = 178
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 62 FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDL 119
F A PVQ KD GPR N I V+L+ EG H VS EA+A+A DL
Sbjct: 5 FRATPVQ----KD-----GPRSNRDIRVPRVQLIDAEGQNHGDVSIQEAIAMAEEAGLDL 55
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
VE+ A PPVCKI+D K KYQ + K + K + + + KE++ I+ D +
Sbjct: 56 VEIVPNAEPPVCKIVDLGKLKYQNQKKAAEARKKQKTV-----EIKEIKMRPNIDTHDYE 110
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
+K R ++G +VK G++ ++LG L R+ + +I+ VES P +E +Q
Sbjct: 111 VKMKAALRFFEEGDKVKVTLRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQ 170
Query: 239 AYAII 243
++
Sbjct: 171 MMMVL 175
>gi|119952988|ref|YP_945197.1| translation initiation factor IF-3 [Borrelia turicatae 91E135]
gi|254803481|sp|A1QYY5.1|IF3_BORT9 RecName: Full=Translation initiation factor IF-3
gi|119861759|gb|AAX17527.1| bacterial protein translation initiation factor 3 (IF-3) [Borrelia
turicatae 91E135]
Length = 186
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N KI A+ VR++ D G V+ +A+ AR + DLVE+ + PPVCKI+D+ K K
Sbjct: 21 RINHKIKAREVRVIFDNGTQSVLPIEDAIKCARDAELDLVEISPNSVPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ + + I L KEVR KI+ DL K + + +G +VK
Sbjct: 81 FHQEKRQKEQKRNQKIIKL-----KEVRMQPKIDTHDLDFKYRNILGFLKEGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLI-EDISVVESGPHVERKQAYAII 243
G++ LG G L +++ + E V+ES +E K + II
Sbjct: 136 FRGRELAHTHLGYGILESILERVGESNYVLESPAKMEGKTMFLII 180
>gi|406707641|ref|YP_006757993.1| translation initiation factor 3 (bIF-3) [alpha proteobacterium
HIMB59]
gi|406653417|gb|AFS48816.1| bacterial translation initiation factor 3 (bIF-3) [alpha
proteobacterium HIMB59]
Length = 181
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 96/165 (58%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ I+A VR++LD+G + V++++EA+ +A+ DLVE+ PPVCKI+D+ K
Sbjct: 19 RINNFISAAEVRVILDDGEQLGVMTKNEAIDIAKGRGLDLVEIAPNNKPPVCKIVDYGKF 78
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ++ K+ + K + I + KE++ + D Q+K ++ + +G RVK
Sbjct: 79 KYQEQKKKNEAKKKQKVI-----ETKELKIRPGTGEHDYQVKIKNAQKFLKEGNRVKFSL 133
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ E +LG L R+ + +E+ VE P +E +QA+ ++
Sbjct: 134 RFKGREMEHSNLGIDMLKRVKNDLEEYIRVEMEPKIEGRQAFLVV 178
>gi|365089918|ref|ZP_09328426.1| translation initiation factor IF-3 [Acidovorax sp. NO-1]
gi|363416611|gb|EHL23715.1| translation initiation factor IF-3 [Acidovorax sp. NO-1]
Length = 158
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
EAL +A L DLVE+ ANPPVC++MD+ K KYQ E K AKAK + + KE
Sbjct: 2 EALRMAGELDVDLVEIAATANPPVCRLMDYGKFKYQ-EQKRAAEAKAKQTVI----EIKE 56
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDI 225
V+F + D +K ++R + G + K G++ ++LG L+R+ D + D
Sbjct: 57 VKFRPGTDDGDYNIKMRNIRRFLADGDKCKITLRFRGREITHQELGLALLNRIRDELADS 116
Query: 226 SVVESGPHVERKQAYAII 243
++E P +E +Q +I
Sbjct: 117 IIIEQFPKLEGRQMIMMI 134
>gi|205374568|ref|ZP_03227364.1| translation initiation factor IF-3 [Bacillus coahuilensis m4-4]
Length = 189
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LND I A+ VRL+ G + + ++ +AL +A + DLV V A PPV +IMD+ K K
Sbjct: 25 LNDGIRAREVRLIDQNGEQLGIKAKRDALEIAGRVNLDLVLVAPNAKPPVARIMDYGKYK 84
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+K+ K + I L KEVR S IE+ D K ++ ++KG +VK
Sbjct: 85 FEQQKKDKEARKNQKIINL-----KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKASIR 139
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + +D++ +ES P ++ + + ++
Sbjct: 140 FKGRAITHKEIGQRVLDRFAEACKDVATIESKPKMDGRSMFLVL 183
>gi|187929056|ref|YP_001899543.1| translation initiation factor IF-3 [Ralstonia pickettii 12J]
gi|187725946|gb|ACD27111.1| translation initiation factor IF-3 [Ralstonia pickettii 12J]
Length = 173
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I+A VRL EG +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 8 RINREISAPEVRLTGVEGEALGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ++ K D AK K + KEV+F + D +K R ++ G RVK
Sbjct: 68 KYQEQKKAHD-AKLKQKVI----QVKEVKFRPGTDDNDYGVKLRNATRFLEDGDRVKVTL 122
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ ++LG L R+ +E+ VE P +E +QA ++ P KK
Sbjct: 123 RFRGREMAHQELGMRVLERIKSDLEEFGQVEQMPKMEGRQAVMML-----APKKK 172
>gi|444909265|ref|ZP_21229456.1| Translation initiation factor 3 [Cystobacter fuscus DSM 2262]
gi|444720214|gb|ELW60998.1| Translation initiation factor 3 [Cystobacter fuscus DSM 2262]
Length = 195
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 117 CDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQK 176
DLVEV+ A PPVCKIMD+ K KY+ E K AK K + KEV+ K E+
Sbjct: 1 MDLVEVNPMAKPPVCKIMDYGKFKYE-EKKRASEAKKKQVVV----HLKEVKLRPKTEEH 55
Query: 177 DLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
D + K V+R +++G + K + G++ ++LG L +I ++D++VVE P +E
Sbjct: 56 DYEFKVRNVRRFLEEGNKAKVTIMFRGREITHKELGSAILDDVIKDLKDVAVVEQMPRME 115
Query: 236 RKQAYAII 243
+Q + II
Sbjct: 116 GRQMFMII 123
>gi|349573836|ref|ZP_08885807.1| translation initiation factor IF3 [Neisseria shayeganii 871]
gi|348014624|gb|EGY53497.1| translation initiation factor IF3 [Neisseria shayeganii 871]
Length = 155
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ G + VVS EA+A+A DLVE+ A PPVCK+MD+ K KY++ K++D
Sbjct: 1 MRLISGTGEQLGVVSIKEAMAMAEEQDVDLVEISPTAKPPVCKLMDYGKYKYEQS-KKRD 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K + KE++F ++ D Q+K + R + G +VK G++ +
Sbjct: 60 EAKKKQKMV----QIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTLRFRGREMAHQ 115
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ G L R+ + + +++ VE P +E +Q +I P KK
Sbjct: 116 EFGAQLLERVKNDLAEVATVEQFPKMEGRQMVMMI-----APKKK 155
>gi|421618118|ref|ZP_16059098.1| translation initiation factor IF-3 [Pseudomonas stutzeri KOS6]
gi|409779868|gb|EKN59515.1| translation initiation factor IF-3 [Pseudomonas stutzeri KOS6]
Length = 177
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ +N+ I+A+ VRL+ +G ++ VS EAL +A + DLVE+ ANPP
Sbjct: 2 RQDKRAAPKAPINENISAREVRLIGADGEQIGIVSIDEALQVAEEAKLDLVEISADANPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KEV+F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQVAAAKKNQKQVQVKEVKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAIIRHVKF 248
G R K G++ ++LG L + ++ + + VE P +E +Q +I
Sbjct: 117 SDGDRAKVSLRFRGREMAHQELGMELLKRVETDLAEYGSVEQHPKMEGRQLIMVI----- 171
Query: 249 GPSKK 253
P KK
Sbjct: 172 APKKK 176
>gi|387136473|ref|YP_005692453.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 42/02-A]
gi|387138545|ref|YP_005694524.1| translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|348606918|gb|AEP70191.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis 42/02-A]
gi|349735023|gb|AEQ06501.1| Translation initiation factor IF-3 [Corynebacterium
pseudotuberculosis CIP 52.97]
Length = 145
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
+A LA DLVEV A PPVCKIMD+ K KY++ K ++ K + + KE
Sbjct: 5 DARKLAYEADLDLVEVAPNAKPPVCKIMDYGKFKYEQAQKAREARKNQQQTVV-----KE 59
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDI 225
+F KI+ D + K + V R ++KG +VK + G+++ +LG L RL D + D
Sbjct: 60 QKFRPKIDDHDYETKKNNVIRFLEKGSKVKVTIMFRGREQSRPELGFRLLERLADDVADF 119
Query: 226 SVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+VE+ P + + + FGP +KG
Sbjct: 120 GIVETKPKQDGRNMTMV-----FGPVRKG 143
>gi|238018997|ref|ZP_04599423.1| hypothetical protein VEIDISOL_00859 [Veillonella dispar ATCC 17748]
gi|313893048|ref|ZP_07826625.1| translation initiation factor IF-3 [Veillonella sp. oral taxon 158
str. F0412]
gi|237864481|gb|EEP65771.1| hypothetical protein VEIDISOL_00859 [Veillonella dispar ATCC 17748]
gi|313442401|gb|EFR60816.1| translation initiation factor IF-3 [Veillonella sp. oral taxon 158
str. F0412]
Length = 172
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ +R+V E ++ +S EALALA DLVE+ A PPV +IM++ K
Sbjct: 9 PRINEEIRARELRVVGPENEQIGIMSGREALALAEEKHLDLVEIAPNAKPPVARIMNYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + +TL KEV+ IE D +K + + +G +VK
Sbjct: 69 YRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIEDHDFYVKMKNASKFLGEGNKVKVT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R + +++ + +E +E + I+
Sbjct: 124 IMFRGRELSHPELGMAVLTRFAEELKETASIEKAAKLEGRNMTMIL 169
>gi|297565682|ref|YP_003684654.1| translation initiation factor IF-3 [Meiothermus silvanus DSM 9946]
gi|296850131|gb|ADH63146.1| translation initiation factor IF-3 [Meiothermus silvanus DSM 9946]
Length = 174
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ +EG++V V EAL +A+ + DLV V A PPV +++D+ K +
Sbjct: 6 INERIRVRQVRLIDEEGNQVGVVDTREALRMAQEREYDLVLVSPNAVPPVARLLDYGKWR 65
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ EK+ K K+ + K ++F KI++ D Q K V+R +++G++VK +
Sbjct: 66 YEQQQAEKEARKKA-----KRTEVKSIKFRPKIDEHDYQTKLGHVRRFLEEGHKVKITIM 120
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +LG L R + + +VVE P + + +I
Sbjct: 121 FRGREMAHPELGSRILERAVADLGPAAVVELKPEMAGRDMNMVI 164
>gi|281412638|ref|YP_003346717.1| translation initiation factor IF-3 [Thermotoga naphthophila RKU-10]
gi|281373741|gb|ADA67303.1| translation initiation factor IF-3 [Thermotoga naphthophila RKU-10]
Length = 170
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 11/170 (6%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T PR N++I A VR+V + G V+ +AL LAR DLV V NPPV +IMD
Sbjct: 5 TDLPR-NEQIKAPKVRVVDENGKMIGVMPTRKALELAREKGLDLVLVAPNENPPVARIMD 63
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KYQ L +K + K + + K+++F KI++ D Q K ++R ++ G++V
Sbjct: 64 YGKYKYQ--LTKKQKENKKKPVQM-----KQMKFRLKIDEHDYQTKVKHIRRFLEDGHKV 116
Query: 196 KCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
+ + + +G++ + G L R+I ED++ VES P +E + + +++
Sbjct: 117 RVVVMFIGREMMFAEKGKEILERVIKDTEDLATVESPPKMEGRDMWMVLK 166
>gi|387930074|ref|ZP_10132751.1| translation initiation factor 3 [Bacillus methanolicus PB1]
gi|387586892|gb|EIJ79216.1| translation initiation factor 3 [Bacillus methanolicus PB1]
Length = 167
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VRL+ G + + S++EAL +A + DLV V A PPV +IMD+ K K
Sbjct: 3 LNEGIRAREVRLIDQNGEQLGIKSKNEALEIAARVNLDLVLVAPNAKPPVARIMDYGKYK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KE++ K + I + KEVR S IE+ D K + ++KG +VK
Sbjct: 63 FEQQKKEREARKNQKII-----NVKEVRLSPTIEEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + +DI+ VES P ++ + + ++
Sbjct: 118 FKGRAITHKEIGQRVLVRFAEACKDIATVESHPKMDGRSMFMVL 161
>gi|302335526|ref|YP_003800733.1| translation initiation factor 3 (bIF-3) [Olsenella uli DSM 7084]
gi|301319366|gb|ADK67853.1| bacterial translation initiation factor 3 (bIF-3) [Olsenella uli
DSM 7084]
Length = 189
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+N++I A+ RL+ +G ++ +A +A DLVE+ A PPVCK+MD+
Sbjct: 5 EGPRINNEITARTCRLIGVDGSQLGLFGVRDAQRIADEQNLDLVEIAPNAEPPVCKVMDY 64
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ K K K + + + KE++F KI+ D K + V R + KG RVK
Sbjct: 65 RKFKYEQDRKAKAARKKQVRV-----EVKEMKFRPKIDVGDYTTKKNHVMRFLRKGARVK 119
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+ G++ + G L RL ++ + VE P +E + + ++ +K
Sbjct: 120 VTIMFRGREMAHPEQGLNVLERLAQDLKPYATVEQQPKMEGRNMHMLVAPIK 171
>gi|378973365|ref|YP_005221971.1| initiation factor IF3 [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|378974432|ref|YP_005223040.1| initiation factor IF3 [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|378975490|ref|YP_005224100.1| initiation factor IF3 [Treponema pallidum subsp. pallidum DAL-1]
gi|378982341|ref|YP_005230648.1| initiation factor IF3 [Treponema pallidum subsp. pertenue str.
CDC2]
gi|374677690|gb|AEZ57983.1| initiation factor IF3 [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|374678760|gb|AEZ59052.1| initiation factor IF3 [Treponema pallidum subsp. pertenue str.
CDC2]
gi|374679829|gb|AEZ60120.1| initiation factor IF3 [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|374680890|gb|AEZ61180.1| initiation factor IF3 [Treponema pallidum subsp. pallidum DAL-1]
Length = 173
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N I + VRLV G + VV EAL +AR + DLVEV +A+PPVCKI+D+ K
Sbjct: 8 RINGSIRVREVRLVDAVGQQCGVVPTPEALRMARDINLDLVEVAPQASPPVCKILDYGKY 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+++ K +D K + TL KEVR KI D+ KA ++R +D+G +VK
Sbjct: 68 RFEMGKKLRDSKKRQRLQTL-----KEVRMQPKINDHDMAFKAKHIQRFLDEGDKVKVTI 122
Query: 200 LPVGKKEETEDLG-----GYLSRLI 219
G++ DLG L RL+
Sbjct: 123 RFRGRELAHTDLGFNVLQNVLGRLV 147
>gi|3122257|sp|O33567.1|IF3_RHOS4 RecName: Full=Translation initiation factor IF-3
gi|2370447|emb|CAA75028.1| translation initiation factor 3 [Rhodobacter sphaeroides]
Length = 181
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 10/170 (5%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+N++I VRL+ G VV+ A+ +A DLVE+ A PPVCKIMDF
Sbjct: 14 TGPRVNERIRCPEVRLIGANGENIGVVTPSRAMMMAEEAGLDLVEISPNAEPPVCKIMDF 73
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KE++F + D +K +V + + +G +VK
Sbjct: 74 GKFKYEQQKREAE-ARKKQHII----EIKEIKFRPGTDTHDYDVKMRSVLKFLSEGDKVK 128
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISV--VESGPHVERKQAYAII 243
G++ ++LG L+R+ + + VE+ P +E +Q +I
Sbjct: 129 VTLRFRGREMAHQELGLELLNRVAAHVSEAEAGKVEAMPKLEGRQMVMMI 178
>gi|342215205|ref|ZP_08707862.1| translation initiation factor IF-3 [Veillonella sp. oral taxon 780
str. F0422]
gi|341588982|gb|EGS32350.1| translation initiation factor IF-3 [Veillonella sp. oral taxon 780
str. F0422]
Length = 174
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ VR+V + + ++S +ALA+A DLVEV PPVC+IM++ K
Sbjct: 9 PRINEEIRAREVRVVSADNDQLGIMSVRDALAMAEEQHLDLVEVAPNGKPPVCRIMNYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + TL KEV+ IE D +K + + G +VK
Sbjct: 69 YRYEQQKREKEAKKKQKTFTL-----KEVKLRPHIEDHDFYVKLKNAAKFLGDGNKVKVT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R + D +VVE +E + I+
Sbjct: 124 IMFRGRELSHPELGLNVLTRFAGELTDQAVVEKEAKLEGRNMTMIL 169
>gi|297562012|ref|YP_003680986.1| translation initiation factor IF-3 [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296846460|gb|ADH68480.1| translation initiation factor IF-3 [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 182
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV G +V VS +AL LA+ DLVEV A PPV K+MD+ K KY+ +K ++
Sbjct: 4 VRLVGPNGEQVGIVSVQDALRLAQESDLDLVEVAPTARPPVAKLMDYGKFKYESAVKARE 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K +S+ + KE++ KI+ D + K V R + G +VK + G+++
Sbjct: 64 SRKNQSNTII-----KEIKLRPKIDPHDYETKKGHVVRFLKSGDKVKVTIMFRGREQSRP 118
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L+RL + ++D+ VES P + + +I GP K+
Sbjct: 119 ELGRRLLARLAEDVQDLGTVESQPKQDGRNMVMVI-----GPHKR 158
>gi|429760159|ref|ZP_19292649.1| translation initiation factor IF-3 [Veillonella atypica KON]
gi|429178564|gb|EKY19842.1| translation initiation factor IF-3 [Veillonella atypica KON]
Length = 194
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 13/187 (6%)
Query: 60 VRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQC 117
+RFF + + K K+T PR+N++I A+ +R+V E ++ +S EALALA
Sbjct: 15 IRFF---ILLEVKAISKDT--PRINEEIRARELRVVGPENEQIGIMSGREALALAEEKHL 69
Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
DLVE+ A PPV +IM++ K +Y+++ +EK+ K + +TL KEV+ IE D
Sbjct: 70 DLVEIAPNAKPPVARIMNYGKYRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIEDHD 124
Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVER 236
+K + + +G +VK + G++ +LG L+R + +++ + +E +E
Sbjct: 125 FYVKMKNASKFLGEGNKVKVTIMFRGRELSHPELGMAVLTRFAEELKETASIEKAAKLEG 184
Query: 237 KQAYAII 243
+ I+
Sbjct: 185 RNMTMIL 191
>gi|409997547|ref|YP_006751948.1| translation initiation factor IF-3 [Lactobacillus casei W56]
gi|406358559|emb|CCK22829.1| Translation initiation factor IF-3 [Lactobacillus casei W56]
Length = 171
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ G + V S +ALA+A D+V V A PPV +IMD+ K +
Sbjct: 7 VNDSIRAREVRLISQTGEQLGVKSTRDALAIAEDANLDVVLVSPNAKPPVARIMDYGKFR 66
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ + KE+D K + +T+ KE+R S I + D + + ++KG +VK
Sbjct: 67 FELQKKERDARKKQKTVTI-----KEIRLSPTIGEADFNTRLKNATKFLEKGDKVKVSVR 121
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +DLG L ++ D +++I+ VE+ P ++ + + ++
Sbjct: 122 FRGRAITHKDLGRKVLEQMADAVKEIAAVETHPKMDGRSMFLML 165
>gi|260892436|ref|YP_003238533.1| translation initiation factor IF-3 [Ammonifex degensii KC4]
gi|260864577|gb|ACX51683.1| translation initiation factor IF-3 [Ammonifex degensii KC4]
Length = 165
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ +G ++ V EAL +A DLVEV +A PPVCKIMD+ K KY+ ++++
Sbjct: 1 MRLIDTDGTQIGIVPLSEALRIAEERGLDLVEVAPQARPPVCKIMDYGKYKYEMSKRDRE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K + +T+ KEV+ IE+ D Q+KA V R + G +VK + G++
Sbjct: 61 ARKKQRLVTV-----KEVKLRPNIEEHDFQVKARNVIRFLKDGDKVKVTIMFRGREIIHP 115
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
LG L RL + + + VVE P +E + I+
Sbjct: 116 QLGERLLERLKEEVAAVGVVERAPKLEGRNMVMIL 150
>gi|330825390|ref|YP_004388693.1| translation initiation factor IF-3 [Alicycliphilus denitrificans
K601]
gi|329310762|gb|AEB85177.1| Translation initiation factor IF-3 [Alicycliphilus denitrificans
K601]
Length = 199
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
Query: 75 EKETSGPRLNDKINAQFVRLV--LDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
++E RLN +I A VRL +E +VS EAL +A L DLVE+ ANPPVC+
Sbjct: 13 QREERKHRLNREIMAPEVRLSGPDNEPLGIVSLQEALRMAGELDVDLVEIAATANPPVCR 72
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
+MD+ K KYQ++ K + ++ I D KEV+F + D +K ++R + G
Sbjct: 73 LMDYGKFKYQEQKKAAEAKAKQTVI-----DIKEVKFRPGTDDGDYNIKLRNIRRFLADG 127
Query: 193 YRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ ++LG L+RL D + D VE P +E +Q +I
Sbjct: 128 DKVKVTLRFRGREITHQELGLALLNRLRDELADSIQVEQFPKLEGRQMIMMI 179
>gi|374705120|ref|ZP_09711990.1| translation initiation factor IF-3 [Pseudomonas sp. S9]
Length = 177
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 15/186 (8%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ +N+ I+A+ VRL+ EG ++ VS EAL +A + DLVE+ A PP
Sbjct: 2 RQDKRTAPKAPINENISAREVRLIGAEGEQIGIVSIDEALRIAEEAKLDLVEISADALPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KE++F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQVAAAKKNQKQVQIKEIKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAIIRHVK 247
+G R K G++ ++LG L + + DL+E VE P +E +Q +I
Sbjct: 117 SEGDRAKVSLRFRGREMAHQELGMELLKRVEGDLLE-YGTVEQHPKMEGRQLIMVI---- 171
Query: 248 FGPSKK 253
P KK
Sbjct: 172 -APKKK 176
>gi|90407012|ref|ZP_01215202.1| translation initiation factor 3 [Psychromonas sp. CNPT3]
gi|90311883|gb|EAS39978.1| translation initiation factor 3 [Psychromonas sp. CNPT3]
Length = 185
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
RLN++I VRL EG VVS EA LA DLVE+ A PPVC+IM++ K
Sbjct: 20 RLNEEITGHEVRLSDSEGKPVGVVSLEEAKNLAFDQNLDLVEISPNAEPPVCRIMNYGKF 79
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+K K++ K + + L KE++F ++ D Q+K + R + +G + K
Sbjct: 80 LYEKSKSAKEQRKKQVQVQL-----KEIKFRPGTDEGDYQVKLRNLTRFLTEGNKAKVTL 134
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L+R+ + +IS VES P +E +Q ++
Sbjct: 135 RYRGREMAHQSLGLNLLNRIKADLAEISNVESFPKMEGRQMVMVL 179
>gi|49089216|gb|AAT51657.1| PA2743, partial [synthetic construct]
Length = 184
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 15/193 (7%)
Query: 67 VQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDR 124
++ + ++D++ P +N+ I+A+ VRL+ +G +V VS EA+ LA + DLVE+
Sbjct: 3 IKREMRQDKRAQPKPPINENISAREVRLIGADGQQVGVVSIDEAIRLAEEAKLDLVEIPA 62
Query: 125 KANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADT 184
A PPVC+IMD Y K L EK + A + K+ KE++F E+ D Q+K
Sbjct: 63 DAVPPVCRIMD-----YGKHLFEKKKLAAVAKKNQKQAQVKEIKFRPGTEEGDYQVKLRN 117
Query: 185 VKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAI 242
+ R + +G + K G++ ++LG L + + DL+E VE P +E +Q +
Sbjct: 118 LVRFLSEGDKAKVSLRFRGREMAHQELGMELLKRVEADLVE-YGTVEQHPKLEGRQLMMV 176
Query: 243 IRHVKFGPSKKGG 255
I P KK G
Sbjct: 177 I-----APKKKKG 184
>gi|85710710|ref|ZP_01041774.1| translation initiation factor 3 [Erythrobacter sp. NAP1]
gi|85687888|gb|EAQ27893.1| translation initiation factor 3 [Erythrobacter sp. NAP1]
Length = 172
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR + I VR++ DEG V+ EA+ A+ +LVEV A+PPVCK +D
Sbjct: 7 SGPRYDQFIQVPKVRVIDDEGENLGVMYTREAVEQAQDKGLNLVEVSPNADPPVCKFLDV 66
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y E ++K A K T K D KEV+ I+ D +K V + +D+G +VK
Sbjct: 67 GKYRY--EAQKKANAARK---TQKTQDIKEVKMRPNIDTHDYDVKMRNVNKFIDQGDKVK 121
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L R+ + +E+I+ VE+ P +E +Q ++
Sbjct: 122 VTLRFRGREMAHQHLGMDLLKRVQEDVEEIAKVEAFPRLEGRQMLMVL 169
>gi|390991771|ref|ZP_10262027.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372553524|emb|CCF69002.1| translation initiation factor IF-3 [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 143
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 88/143 (61%), Gaps = 8/143 (5%)
Query: 103 VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKG 162
+SR EALA A DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+
Sbjct: 1 MSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQV 55
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI--D 220
+ KE++F ++ D Q+K ++R +++G +VK G++ ++LG ++ I D
Sbjct: 56 EIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEAD 115
Query: 221 LIEDISVVESGPHVERKQAYAII 243
L +DI V+ES P +E +Q +I
Sbjct: 116 LGDDI-VIESRPRLEGRQMVMMI 137
>gi|416999205|ref|ZP_11939874.1| translation initiation factor IF-3 [Veillonella parvula
ACS-068-V-Sch12]
gi|333977358|gb|EGL78217.1| translation initiation factor IF-3 [Veillonella parvula
ACS-068-V-Sch12]
Length = 174
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ +R+V E ++ +S EALALA DLVE+ A PPV +IM++ K
Sbjct: 11 PRINEEIRARELRVVGPENEQIGIMSGREALALAEEQHLDLVEIAPNAKPPVARIMNYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + +TL KEV+ IE D +K + + +G +VK
Sbjct: 71 YRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIEDHDFYVKMKNASKFLGEGNKVKVT 125
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R + +++ + +E +E + I+
Sbjct: 126 IMFRGRELSHPELGMAVLTRFAEELKETASIEKAAKLEGRNMTMIL 171
>gi|326317188|ref|YP_004234860.1| translation initiation factor IF-3 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374024|gb|ADX46293.1| translation initiation factor IF-3 [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 173
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 6/153 (3%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS EAL +A L DLVE+ ANPPVC+++D+ K KYQ E K AKAK +
Sbjct: 17 VVSLMEALRMAGELDVDLVEIAATANPPVCRLVDYGKFKYQ-EQKRAAEAKAKQTVI--- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KEV+F + D +K ++R + +G + K G++ +++G L+R+ D
Sbjct: 73 -EIKEVKFRPGTDDGDYNIKLRNIRRFLAEGDKCKITLRFRGREITHQEIGLALLNRIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ D +VE P +E +Q +I K P+ K
Sbjct: 132 DLGDTILVEQFPKLEGRQMIMMIAPGKRKPAAK 164
>gi|363423001|ref|ZP_09311072.1| translation initiation factor IF-3 [Rhodococcus pyridinivorans
AK37]
gi|359732142|gb|EHK81162.1| translation initiation factor IF-3 [Rhodococcus pyridinivorans
AK37]
Length = 256
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +AL LA DLVEV A PPVCKIMD+ K
Sbjct: 39 RINERIRVPEVRLVGPGGEQVGIVRVEDALRLAIEADLDLVEVAPDARPPVCKIMDYGKF 98
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K V R ++ G +VK
Sbjct: 99 KYEAAQKARESRKNQQQTVI-----KEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 153
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL + D+ +E+ P
Sbjct: 154 MFRGREQSRPELGYRLLQRLGADVADLGFIETSP 187
>gi|225181660|ref|ZP_03735100.1| translation initiation factor IF-3 [Dethiobacter alkaliphilus AHT
1]
gi|225167641|gb|EEG76452.1| translation initiation factor IF-3 [Dethiobacter alkaliphilus AHT
1]
Length = 140
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
EAL +A DLV V A PPVC+IMDF K K+++ +EK+ K + IT+ KE
Sbjct: 3 EALRIAGEKNLDLVAVSLSAKPPVCRIMDFGKYKFEQSKREKEARKNQKTITM-----KE 57
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDI 225
V+ IE+ D Q+K +R ++ G +VK + G++ +LG L R+ +ED+
Sbjct: 58 VKVRPNIEEHDFQVKLKNARRFLENGDKVKATVMFRGREITHPELGQKLLLRIAKDVEDL 117
Query: 226 SVVESGPHVERKQAYAII 243
VE P VE + I+
Sbjct: 118 GNVERVPKVEGRNMIMIL 135
>gi|257069327|ref|YP_003155582.1| translation initiation factor 3 [Brachybacterium faecium DSM 4810]
gi|256560145|gb|ACU85992.1| bacterial translation initiation factor 3 (bIF-3) [Brachybacterium
faecium DSM 4810]
Length = 208
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
S R+N +I V LV G +V V +AL LA+ DLVEV ANPPV ++MD
Sbjct: 1 MSEQRINGQIRVPKVLLVGPAGEQVGEVRVEDALRLAQEADLDLVEVAPGANPPVARLMD 60
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ LK ++ K +++ KE+R KI+ D + K V++ +D G +V
Sbjct: 61 YGKYKYEANLKAREARKNQANTV-----QKEIRMGLKIDTHDYETKRRNVEKFLDGGDKV 115
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ + G L R+ + + D VES P + + + FGP KK
Sbjct: 116 KVIIRFRGREQARPERGVKLLQRMAEDVADYGFVESHPRQDGRNMVMV-----FGPHKK 169
>gi|15594535|ref|NP_212324.1| translation initiation factor IF-3 [Borrelia burgdorferi B31]
gi|195941921|ref|ZP_03087303.1| translation initiation factor IF-3 [Borrelia burgdorferi 80a]
gi|216264263|ref|ZP_03436255.1| translation initiation factor IF-3 [Borrelia burgdorferi 156a]
gi|218249678|ref|YP_002374718.1| translation initiation factor IF-3 [Borrelia burgdorferi ZS7]
gi|221217563|ref|ZP_03589033.1| translation initiation factor IF-3 [Borrelia burgdorferi 72a]
gi|224532816|ref|ZP_03673431.1| translation initiation factor IF-3 [Borrelia burgdorferi WI91-23]
gi|224534076|ref|ZP_03674659.1| translation initiation factor IF-3 [Borrelia burgdorferi CA-11.2a]
gi|225548524|ref|ZP_03769572.1| translation initiation factor IF-3 [Borrelia burgdorferi 94a]
gi|225552487|ref|ZP_03773427.1| translation initiation factor IF-3 [Borrelia sp. SV1]
gi|226320901|ref|ZP_03796452.1| translation initiation factor IF-3 [Borrelia burgdorferi 29805]
gi|226321508|ref|ZP_03797034.1| translation initiation factor IF-3 [Borrelia burgdorferi Bol26]
gi|343127510|ref|YP_004777441.1| translation initiation factor IF-3 [Borrelia bissettii DN127]
gi|387825845|ref|YP_005805298.1| translation initiation factor IF-3 [Borrelia burgdorferi JD1]
gi|387827107|ref|YP_005806389.1| translation initiation factor IF-3 [Borrelia burgdorferi N40]
gi|3913890|sp|O51208.1|IF3_BORBU RecName: Full=Translation initiation factor IF-3
gi|226707353|sp|B7J1C3.1|IF3_BORBZ RecName: Full=Translation initiation factor IF-3
gi|2688074|gb|AAC66571.1| translation initiation factor IF-3 [Borrelia burgdorferi B31]
gi|215980736|gb|EEC21543.1| translation initiation factor IF-3 [Borrelia burgdorferi 156a]
gi|218164866|gb|ACK74927.1| translation initiation factor IF-3 [Borrelia burgdorferi ZS7]
gi|221192626|gb|EEE18843.1| translation initiation factor IF-3 [Borrelia burgdorferi 72a]
gi|224512205|gb|EEF82591.1| translation initiation factor IF-3 [Borrelia burgdorferi WI91-23]
gi|224512775|gb|EEF83143.1| translation initiation factor IF-3 [Borrelia burgdorferi CA-11.2a]
gi|225370787|gb|EEH00222.1| translation initiation factor IF-3 [Borrelia burgdorferi 94a]
gi|225371485|gb|EEH00915.1| translation initiation factor IF-3 [Borrelia sp. SV1]
gi|226232697|gb|EEH31450.1| translation initiation factor IF-3 [Borrelia burgdorferi Bol26]
gi|226233673|gb|EEH32403.1| translation initiation factor IF-3 [Borrelia burgdorferi 29805]
gi|312148032|gb|ADQ30691.1| translation initiation factor IF-3 [Borrelia burgdorferi JD1]
gi|312148999|gb|ADQ29070.1| translation initiation factor IF-3 [Borrelia burgdorferi N40]
gi|342222198|gb|AEL18376.1| translation initiation factor IF-3 [Borrelia bissettii DN127]
Length = 186
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
++N +I A+ VR++ + G +V+S +A+ A+ DLVEV +PPVCKI+D+ K K
Sbjct: 21 KINYRIKAREVRVIFENGTQEVLSIEDAIKKAKEAGLDLVEVSPNVSPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K+ + + G +VK
Sbjct: 81 FHQEKRQKEQKKNQKVIKL-----KEVRMQPKIDAHDLDFKSKNILGFLKDGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L+ +++ + D++ V+ES +E K + I+
Sbjct: 136 FRGRELAHTYLGYGILNSILEKVGDVNYVLESAAKMEGKTMFLIV 180
>gi|352095356|ref|ZP_08956459.1| Translation initiation factor IF-3 [Synechococcus sp. WH 8016]
gi|351679367|gb|EHA62509.1| Translation initiation factor IF-3 [Synechococcus sp. WH 8016]
Length = 212
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+ R +AL +AR + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDADGEQLGVIDREKALEVARERELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ +R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLGGYLSR 217
+ G++ + L L R
Sbjct: 132 VIFRGREIQHTALAEVLLR 150
>gi|347731742|ref|ZP_08864829.1| translation initiation factor IF-3 [Desulfovibrio sp. A2]
gi|347519417|gb|EGY26575.1| translation initiation factor IF-3 [Desulfovibrio sp. A2]
Length = 167
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 95/165 (57%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N+++ A+ VR++ +G + ++SR++A+A A+ L DLVEV A+PPVC++MD+ +
Sbjct: 2 RRNEQVRAREVRVIGADGEQLGILSRNDAIAHAKELGLDLVEVAATADPPVCRVMDYGRF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+++ K+ + K ++ I + KE++ K + D K ++R +D+G R K
Sbjct: 62 KYEQQKKKAEAKKNQTVIQI-----KEIKVRPKTDDHDYDTKVRHIRRFLDEGDRCKVTV 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +D G L R+++ +DI+ V+ E + + ++
Sbjct: 117 FFRGREIVHKDRGQSILDRIVEDTKDIAKVDQEARAEGRTLFMML 161
>gi|260434416|ref|ZP_05788386.1| translation initiation factor IF-3 [Synechococcus sp. WH 8109]
gi|260412290|gb|EEX05586.1| translation initiation factor IF-3 [Synechococcus sp. WH 8109]
Length = 217
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+SR EAL +A + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDSDGAQLGVISREEALDVASDRELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ +R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G + + L L R+ +E+ + ++ P E
Sbjct: 132 VIFRGLEIQHTALAETLLRRMAKDLEEKAEIQQAPKRE 169
>gi|339629797|ref|YP_004721440.1| translation initiation factor IF-3 [Sulfobacillus acidophilus TPY]
gi|339287586|gb|AEJ41697.1| translation initiation factor IF-3 [Sulfobacillus acidophilus TPY]
Length = 143
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 103 VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKG 162
+S +AL LA + DLVEV A PPVC++MD+ K KY++ +E++ K + + +
Sbjct: 1 MSIRDALTLAAERRLDLVEVSPTARPPVCRLMDYGKFKYEQAKRERESRKKQKVVNI--- 57
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDL 221
KE++ IE D ++K + +R + +G +VKC + G++ L L +L D
Sbjct: 58 --KELKMRPAIEDHDFEVKVKSARRFLAEGDKVKCTMVFRGREIVHASLAQETLKKLADA 115
Query: 222 IEDISVVESGPHVERKQAYAII 243
+ D+ +VE P VE + I+
Sbjct: 116 VADVGIVERVPKVEGRAMIMIL 137
>gi|325662120|ref|ZP_08150738.1| translation initiation factor IF-3 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331085917|ref|ZP_08335000.1| translation initiation factor IF-3 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471569|gb|EGC74789.1| translation initiation factor IF-3 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330406840|gb|EGG86345.1| translation initiation factor IF-3 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 164
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + +RL+ ++G + ++S EA+ LA + DLV++ A PPVCKI+D+ K K
Sbjct: 2 INEQIRDKEIRLIGEDGEQLGIMSTREAMKLAAEAELDLVKIAPTAKPPVCKIIDYGKYK 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y E R + ++ K D KEVR S I+ DL K + K+ + KG +VK
Sbjct: 62 Y-----ELTRKEKEAKKKQKTVDVKEVRLSPNIDTNDLNTKVNNAKKFIQKGNKVKVTLR 116
Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVE 235
G++ + L D+++DI+VVE +E
Sbjct: 117 FRGREMAHMQTSKHILDDFADMLKDIAVVEKPTKLE 152
>gi|113953559|ref|YP_729327.1| translation initiation factor IF-3 [Synechococcus sp. CC9311]
gi|123328048|sp|Q0IDZ5.1|IF3_SYNS3 RecName: Full=Translation initiation factor IF-3
gi|113880910|gb|ABI45868.1| translation initiation factor IF-3 [Synechococcus sp. CC9311]
Length = 212
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+ R +AL +AR + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDADGEQLGVIDREQALEVARERELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ +R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLGGYLSR 217
+ G++ + L L R
Sbjct: 132 VIFRGREIQHTALAEVLLR 150
>gi|406927096|gb|EKD63179.1| Translation initiation factor IF-3 [uncultured bacterium]
Length = 232
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 12/159 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +IN+ VRL+ D+ +V + +ALALA DL+EV KANPPVCKIMD+ K
Sbjct: 69 RVNRQINSPTVRLISDDQEQVGIMGLDKALALAHEKNLDLIEVSPKANPPVCKIMDYGKY 128
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
YQ + E+ + K +KK + K +R S + + DL +K + K+ + G VK
Sbjct: 129 LYQLKKAEQKQKKG-----MKKTEIKGIRLSLRTDVGDLNIKINKAKQFLADGNIVKVQL 183
Query: 200 LPVGKKEETEDLGGYLSRLI---DLIEDISVVESGPHVE 235
+ G++ +LG L+++I D +++++ ++ P ++
Sbjct: 184 MFKGREIIHSELG--LAKIITFRDALKEVAKIDLEPKMQ 220
>gi|118474606|ref|YP_892821.1| translation initiation factor IF-3 [Campylobacter fetus subsp.
fetus 82-40]
gi|424821471|ref|ZP_18246509.1| translation initiation factor IF-3 [Campylobacter fetus subsp.
venerealis NCTC 10354]
gi|166198951|sp|A0RRI8.1|IF3_CAMFF RecName: Full=Translation initiation factor IF-3
gi|118413832|gb|ABK82252.1| translation initiation factor IF-3 [Campylobacter fetus subsp.
fetus 82-40]
gi|342328250|gb|EGU24734.1| translation initiation factor IF-3 [Campylobacter fetus subsp.
venerealis NCTC 10354]
Length = 172
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++I A VR V D+G + V+SR EA +A + DLV + A PPVCKIMD+ K +
Sbjct: 9 LNEEIRASEVRCVGDDGTAYGVISRGEAQDIANRMGLDLVLIAPDAKPPVCKIMDYGKFR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K+K+ K + I + KE++ S KI Q D+ K + +++G VK
Sbjct: 69 YQQEKKQKEAKKKQKVI-----EVKEIKLSVKIAQNDINYKIKHAQEFLEEGKHVKFRVF 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ T D+G L R+ +L++D + + P +E
Sbjct: 124 LKGREMATPDIGVVMLERIWELVKDYADRDKVPALE 159
>gi|294783293|ref|ZP_06748617.1| translation initiation factor IF-3 [Fusobacterium sp. 1_1_41FAA]
gi|294480171|gb|EFG27948.1| translation initiation factor IF-3 [Fusobacterium sp. 1_1_41FAA]
Length = 180
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 7/133 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI + R++ +G + ++S +AL LA S DLVE+ ANPPVCK+MD+ K
Sbjct: 17 RINEKIRGKEFRIISFDGEQLGIMSAEQALNLASSQGYDLVEIAPGANPPVCKVMDYSKY 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KE++ + +I+ DL+ K + V + ++K +VK
Sbjct: 77 KYEQTRKLKEAKKNQKQVVV-----KEIKVTARIDSHDLETKLNQVTKFLEKENKVKITL 131
Query: 200 LPVGKKEETEDLG 212
+ G+++ +LG
Sbjct: 132 VLFGREKMHANLG 144
>gi|386839127|ref|YP_006244185.1| translation initiation factor IF-3 [Streptomyces hygroscopicus
subsp. jinggangensis 5008]
gi|374099428|gb|AEY88312.1| translation initiation factor IF-3 [Streptomyces hygroscopicus
subsp. jinggangensis 5008]
gi|451792420|gb|AGF62469.1| translation initiation factor IF-3 [Streptomyces hygroscopicus
subsp. jinggangensis TL01]
Length = 197
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 155
>gi|325067167|ref|ZP_08125840.1| translation initiation factor IF-3 [Actinomyces oris K20]
Length = 142
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRVEDALRLAEEADLDLVEVAPDARPPVCKLMDYGKFKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI++ D K V+R + G +VKC+ G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDEHDYATKRGHVERFLKGGDKVKCIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L L + + ++ +ES P
Sbjct: 116 ELGIRLLQGLAEEMAELGTIESHP 139
>gi|225024915|ref|ZP_03714107.1| hypothetical protein EIKCOROL_01803 [Eikenella corrodens ATCC
23834]
gi|224942319|gb|EEG23528.1| hypothetical protein EIKCOROL_01803 [Eikenella corrodens ATCC
23834]
Length = 193
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I+A+ VRL+ G + VV+ EALA+A DLVE+ A PPVCK+MD+ K
Sbjct: 29 RINGEIHAKEVRLISGTGEQLGVVTVKEALAMAEEQDVDLVEISPTAKPPVCKLMDYGKY 88
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K++D AK K KE++F ++ D Q+K V R + G +VK
Sbjct: 89 KYEQS-KKRDEAKKKQKQVQI----KEIKFRPGTDEGDYQIKMRNVTRFLTDGDKVKITL 143
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L R+ + +++ VE P +E +Q ++
Sbjct: 144 RFRGREMAHQHLGAQLLERVKADLAEVAAVEQFPKMEGRQMVMMV 188
>gi|417788020|ref|ZP_12435703.1| translation initiation factor 3 [Lactobacillus salivarius NIAS840]
gi|417810598|ref|ZP_12457277.1| translation initiation factor IF-3 [Lactobacillus salivarius GJ-24]
gi|418961110|ref|ZP_13512997.1| translation initiation factor IF-3 [Lactobacillus salivarius
SMXD51]
gi|334308197|gb|EGL99183.1| translation initiation factor 3 [Lactobacillus salivarius NIAS840]
gi|335349394|gb|EGM50894.1| translation initiation factor IF-3 [Lactobacillus salivarius GJ-24]
gi|380344777|gb|EIA33123.1| translation initiation factor IF-3 [Lactobacillus salivarius
SMXD51]
Length = 166
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +RL+ D G + V ++ EAL +A DLV V KA PPV KIMD+ K
Sbjct: 2 VNEGIRARELRLISDNGDQLGVKTKQEALKMAEDANLDLVLVAPKAKPPVAKIMDYG--K 59
Query: 141 YQKELKEKDR-AKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+ EL++K R A+ K + + KEVR S I+ D K ++ + KG +VK
Sbjct: 60 YRFELQKKQREARKKQKVV----NIKEVRLSPTIDTNDFNTKMKNARKFLSKGDKVKVSI 115
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L+R + ED++ VES ++ + + ++
Sbjct: 116 RFKGRAITHKDIGRDVLNRFAEATEDVATVESKAKMDGRSMFLML 160
>gi|167957095|ref|ZP_02544169.1| translation initiation factor IF-3 [candidate division TM7
single-cell isolate TM7c]
Length = 140
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 83/141 (58%), Gaps = 8/141 (5%)
Query: 106 HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQK-ELKEKDRAKAKSDITLKKGDC 164
EAL A + DLVE+ A PPV KI+D+ K +YQK + ++K+R +AKS GD
Sbjct: 4 QEALKKAEGMDLDLVEISPGAKPPVAKIIDWGKYQYQKMKDQQKNRRQAKS------GDL 57
Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYL-SRLIDLIE 223
K++RF KI DL++K +++ ++ G++V+ + G++ +++G L +++D +
Sbjct: 58 KQMRFGLKIGAGDLKVKLKKIRKFLENGHKVRIQVVYKGREMAHKEIGYELIDKVMDQLS 117
Query: 224 DISVVESGPHVERKQAYAIIR 244
D +++E P + + +IR
Sbjct: 118 DDAILEQKPQMAGRNLSVVIR 138
>gi|39931212|sp|Q7NYC5.1|IF3_CHRVO RecName: Full=Translation initiation factor IF-3
Length = 175
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ +RLV EG ++ VS EA+ALA DLVE+ A PPVCK+MD+ K
Sbjct: 11 RINGEITAREIRLVGKEGEQIGIVSLREAMALAEENDVDLVEISPTAQPPVCKLMDYGKY 70
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY E+ + + ++ K+ KE++F + D +K + R + +G + K
Sbjct: 71 KY-----EQSKKRHEAKQKQKQVQIKEIKFRPGTDDGDYNVKLRNLVRFLTEGDKAKVTL 125
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ +D+G L R+ + ++ VE P +E +Q +I P KK
Sbjct: 126 RFRGREMAHQDIGLALLKRVEADLAEVGTVEQFPRLEGRQMVMMI-----APKKK 175
>gi|297183197|gb|ADI19338.1| translation initiation factor 3 (if-3) [uncultured delta
proteobacterium HF0500_03A04]
Length = 155
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+S AL A++ DLVEV KA PPVC++MDF K KYQ+ K AK IT
Sbjct: 11 VLSLQNALEKAQTDGLDLVEVSPKARPPVCRLMDFGKYKYQQS-KRTHAAKQNQKIT--- 66
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLID 220
KEV+F KIE+ D Q K R +D G +VK + G+ +D+G L++ ++
Sbjct: 67 -RLKEVKFKPKIEEHDYQFKLRNALRFLDDGDKVKIKVVFYGRMMAHKDMGRVLLNKFLE 125
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ + SVVE E + + I+
Sbjct: 126 EVGERSVVEQPIMDEGRNMFMIL 148
>gi|262276750|ref|ZP_06054543.1| translation initiation factor IF-3 [alpha proteobacterium HIMB114]
gi|262223853|gb|EEY74312.1| translation initiation factor IF-3 [alpha proteobacterium HIMB114]
Length = 167
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+N+KI A V+L+ D+G VV EAL A+ + DL+EV A PPVCKI+D+
Sbjct: 3 GPRVNNKIRASEVQLITDDGDNIGVVPIGEALDRAKEVGLDLIEVAPNAKPPVCKIIDYG 62
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+ + K K + ITL KE++ ++ D K K+ + KG +VK
Sbjct: 63 KYKYEIQKKASQAKKKQKVITL-----KELKLRPSTDKHDYDFKMKNAKKFISKGDKVKF 117
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
G++ + + ++I+ +DIS VE +E +Q II+
Sbjct: 118 TIRFKGREMDYMKAAYDLVDKIIEDTKDISKVEQKAKMEGRQMTMIIQ 165
>gi|33864629|ref|NP_896188.1| translation initiation factor IF-3 [Synechococcus sp. WH 8102]
gi|39931219|sp|Q7UA08.1|IF3_SYNPX RecName: Full=Translation initiation factor IF-3
gi|33632152|emb|CAE06608.1| translation initiation factor IF-3 [Synechococcus sp. WH 8102]
Length = 217
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+I+ +R+V +G + V+SR EAL +A+ + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRISYPQLRVVDSDGSQLGVISREEALEVAKERELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQAVRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + L L R+ +E+ + ++ P E
Sbjct: 132 VIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKRE 169
>gi|124026795|ref|YP_001015910.1| translation initiation factor IF-3 [Prochlorococcus marinus str.
NATL1A]
gi|166198963|sp|A2C586.1|IF3_PROM1 RecName: Full=Translation initiation factor IF-3
gi|123961863|gb|ABM76646.1| Translation Initiation factor 3 [Prochlorococcus marinus str.
NATL1A]
Length = 202
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E P +N++I+ +R+V +G + V+SR EAL +A+ + DLV V KA PPVC+IM
Sbjct: 13 ERELPNINERISYSSLRVVDSDGTQLGVISREEALEVAKERELDLVLVSEKATPPVCRIM 72
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
++ K K+ E+++ ++ + + KEV+ KI+Q D Q++ R + G +
Sbjct: 73 NYGKFKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDK 127
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VKC + G++ + L L R+ +E+ + V+ P E
Sbjct: 128 VKCTVIFRGREIQHTALAETLLKRMSKDLEEKAEVQQSPKRE 169
>gi|428299546|ref|YP_007137852.1| translation initiation factor 3 (bIF-3) [Calothrix sp. PCC 6303]
gi|428236090|gb|AFZ01880.1| bacterial translation initiation factor 3 (bIF-3) [Calothrix sp.
PCC 6303]
Length = 177
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ EA++LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGSQLGILTPQEAISLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQH-----TADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL + L R+ + +E + V+ P E + +I
Sbjct: 128 VMFRGREIQHSDLAEHLLKRMANDLEPLGEVQQAPKKEGRNMMMLI 173
>gi|108759780|ref|YP_628849.1| translation initiation factor IF-3 [Myxococcus xanthus DK 1622]
gi|1352320|sp|P48516.2|IF3_MYXXA RecName: Full=Translation initiation factor IF-3
gi|123248162|sp|Q1DES4.1|IF3_MYXXD RecName: Full=Translation initiation factor IF-3
gi|436165|gb|AAC13748.1| Dsg [Myxococcus xanthus]
gi|108463660|gb|ABF88845.1| translation initiation factor IF-3 [Myxococcus xanthus DK 1622]
Length = 247
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR+V +G + V+ AL AR+ DLVE+ A+PPVCKIMD+ K
Sbjct: 16 RTNRRIRAREVRVVGSDGSQLGVMPLEAALDRARTEGLDLVEISPMASPPVCKIMDYGKF 75
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+++ K + +A+ + L KEV+ K E+ D + K +R ++ G + K +
Sbjct: 76 KYEEKKKASEAKRAQVTVLL-----KEVKLRPKTEEHDYEFKVRNTRRFIEDGNKAKVVI 130
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L + ++D++VVE P +E + + I+
Sbjct: 131 QFRGREITHREQGTAILDDVAKDLKDVAVVEQMPRMEGRLMFMIL 175
>gi|384566713|ref|ZP_10013817.1| translation initiation factor IF-3 [Saccharomonospora glauca K62]
gi|384522567|gb|EIE99762.1| translation initiation factor IF-3 [Saccharomonospora glauca K62]
Length = 192
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S R+N++I VRLV G +V V +AL LA+ DLVEV +A PPV K+MD
Sbjct: 8 SSETRINERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVAKLMD 67
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K ++ ++ +T+ KE + KI+ D + K V R ++ G +V
Sbjct: 68 YGKFKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDPHDYETKKGHVSRFLEAGNKV 122
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L RL D + ++ VES P
Sbjct: 123 KVTIMFRGREQSRPELGFRLLQRLADDVSELGFVESKP 160
>gi|375096145|ref|ZP_09742410.1| translation initiation factor IF-3 [Saccharomonospora marina XMU15]
gi|374656878|gb|EHR51711.1| translation initiation factor IF-3 [Saccharomonospora marina XMU15]
Length = 204
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S R+N++I VRLV G +V V +AL LA+ DLVEV +A PPV K+MD
Sbjct: 20 SSDTRINERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVAKLMD 79
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K KY+ K ++ ++ +T+ KE + KI+ D + K V R + G +V
Sbjct: 80 FGKFKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDPHDYETKKGHVSRFLSAGNKV 134
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L RL D + ++ VES P
Sbjct: 135 KVTIMFRGREQSRPELGFRLLQRLADDVSELGFVESSP 172
>gi|354806782|ref|ZP_09040262.1| translation initiation factor IF-3 [Lactobacillus curvatus CRL 705]
gi|354514757|gb|EHE86724.1| translation initiation factor IF-3 [Lactobacillus curvatus CRL 705]
Length = 167
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ +RL+ +G + + S +A+ALA D+V V A PPV +IMD+ K +
Sbjct: 2 VNDGIRARELRLIAQDGEQLGIKSTQDAIALADQANMDVVLVSPNAKPPVARIMDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ + K++D K + I L KEVR S IEQ D K + ++ + KG +VK
Sbjct: 62 FELQKKQRDARKKQKTINL-----KEVRLSPTIEQNDFNTKLNNARKFLGKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G+ +++G L RL EDI+ V + P ++ + + ++ +K
Sbjct: 117 FKGRAITHKEIGQRVLERLAKETEDIAKVTARPKMDGRSMFLMLEPLK 164
>gi|313896162|ref|ZP_07829715.1| translation initiation factor IF-3 [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974961|gb|EFR40423.1| translation initiation factor IF-3 [Selenomonas sp. oral taxon 137
str. F0430]
Length = 188
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VR+ G + ++ EAL +A DLVEV A PPVC+IMDF K
Sbjct: 2 RINEEIRIREVRVTGAAGEQLGIMPTIEALRMAEEQHLDLVEVAPNARPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 62 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 116
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + D+ +E G +E K I+
Sbjct: 117 MFRGRELSHPELGRVVLDRVSERMGDLVSIERGAKLEGKNMTMIL 161
>gi|323339585|ref|ZP_08079859.1| translation initiation factor IF3 [Lactobacillus ruminis ATCC
25644]
gi|335996445|ref|ZP_08562362.1| protein translation initiation factor 3 [Lactobacillus ruminis
SPM0211]
gi|347525539|ref|YP_004832287.1| translation initiation factor IF-3 [Lactobacillus ruminis ATCC
27782]
gi|417973874|ref|ZP_12614708.1| translation initiation factor IF-3 [Lactobacillus ruminis ATCC
25644]
gi|323092980|gb|EFZ35578.1| translation initiation factor IF3 [Lactobacillus ruminis ATCC
25644]
gi|335351515|gb|EGM53006.1| protein translation initiation factor 3 [Lactobacillus ruminis
SPM0211]
gi|345284498|gb|AEN78351.1| Translation initiation factor IF-3 [Lactobacillus ruminis ATCC
27782]
gi|346329745|gb|EGX98030.1| translation initiation factor IF-3 [Lactobacillus ruminis ATCC
25644]
Length = 166
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +RL+ D+G + V S+ EAL +A DLV V KA PPV KIMD+ K
Sbjct: 2 VNEGIRARELRLIADDGAQLGVKSKQEALQMAEQANLDLVLVAPKAKPPVAKIMDYG--K 59
Query: 141 YQKELKEKDR-AKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+ EL++K R A+ K + + KEVR S I+ D K ++ + KG +VK
Sbjct: 60 YRFELQKKQREARKKQKVI----NVKEVRLSPTIDTNDFNTKMKNARKFLSKGDKVKVSI 115
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + D++ VES P ++ + + ++
Sbjct: 116 RFKGRAITHKEIGREVLDRFAEETSDVATVESKPKMDGRSMFLML 160
>gi|330836892|ref|YP_004411533.1| translation initiation factor 3 (bIF-3) [Sphaerochaeta coccoides
DSM 17374]
gi|329748795|gb|AEC02151.1| bacterial translation initiation factor 3 (bIF-3) [Sphaerochaeta
coccoides DSM 17374]
Length = 195
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 87/144 (60%), Gaps = 8/144 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N KI ++ V ++ +G + V++ ++A+ +A L DLVEV ANPPVCKI+DF K
Sbjct: 7 RINRKIRSREVFVIDADGTQRGVMNTYDAVQMAEDLGLDLVEVSPNANPPVCKILDFGKY 66
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++E + ++ AK + T+ K KEVR KIE+ D++ K+ + + +G +VK
Sbjct: 67 RYEQEKRMRE---AKKNQTVTK--IKEVRMQPKIEKHDMETKSRAITEFLGEGNKVKISV 121
Query: 200 LPVGKKEETEDLGG-YLSRLIDLI 222
G++ +LG L +++D++
Sbjct: 122 RFRGRELAHTELGKVVLDKILDVL 145
>gi|282850467|ref|ZP_06259846.1| translation initiation factor IF-3 [Veillonella parvula ATCC 17745]
gi|282579960|gb|EFB85364.1| translation initiation factor IF-3 [Veillonella parvula ATCC 17745]
Length = 174
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ +R+V E ++ +S EALALA DLVE+ A PPV +IM++ K
Sbjct: 11 PRINEEIRARELRVVGPENEQIGIMSGREALALAEEQHLDLVEIAPNAKPPVARIMNYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + +TL KEV+ IE D +K + + +G +VK
Sbjct: 71 YRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIEDHDFYVKMKNASKFLAEGNKVKVT 125
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R + +++ + +E +E + I+
Sbjct: 126 IMFRGRELSHPELGMAVLTRFAEELKETASIEKAAKLEGRNMTMIL 171
>gi|427405585|ref|ZP_18895790.1| translation initiation factor IF-3 [Selenomonas sp. F0473]
gi|425708426|gb|EKU71465.1| translation initiation factor IF-3 [Selenomonas sp. F0473]
Length = 188
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VR+ G + ++ EAL +A DLVEV A PPVC+IMDF K
Sbjct: 2 RINEEIRIREVRVTSAAGEQLGIMPTVEALRMAEDQHLDLVEVAPNARPPVCRIMDFGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+++ +EK+ K + I++ KEV+ I++ D +K R +++G +VK
Sbjct: 62 RYEQQKREKEAKKKQKTISI-----KEVKLRPNIDEHDFNVKLKNALRFVEEGNKVKVTI 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+ + + ++ +E G +E K I+
Sbjct: 117 MFRGRELSHPELGRAVLDRVSERMGELVTIERGAKLEGKNMTMIL 161
>gi|78776268|ref|YP_392583.1| translation initiation factor IF-3 [Sulfurimonas denitrificans DSM
1251]
gi|123754759|sp|Q30UI3.1|IF3_SULDN RecName: Full=Translation initiation factor IF-3
gi|78496808|gb|ABB43348.1| bacterial translation initiation factor 3 (bIF-3) [Sulfurimonas
denitrificans DSM 1251]
Length = 172
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
Query: 76 KETSGPRLNDKINAQFVRLVLD--EGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
K+T +ND I VR +D E +VS EA+ A L DLV + A PPV KI
Sbjct: 3 KKTDRVIMNDDIRVPEVRCNVDGAESLGIVSTDEAMERANELGLDLVLIAPDAKPPVAKI 62
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
MD+ K +YQ+E K K++ K + I D KE++ S KI + D+ K + + +G
Sbjct: 63 MDYGKYRYQEERKLKEQKKNQVKI-----DVKEIKLSVKIAENDINYKVKHAREFLAEGK 117
Query: 194 RVKCMALPVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
VK G++ E L R+ +IED+ V++ P E
Sbjct: 118 HVKFRVFLKGREMANPESAKDVLLRVWAMIEDVGVMDKEPKFE 160
>gi|237796593|ref|YP_002864145.1| translation initiation factor IF-3 [Clostridium botulinum Ba4 str.
657]
gi|229260890|gb|ACQ51923.1| translation initiation factor IF-3 [Clostridium botulinum Ba4 str.
657]
Length = 184
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM++ K
Sbjct: 21 MNEQIREKEVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNYGKFL 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I + KEVR S IE D+++KA+ ++ ++ G +VK
Sbjct: 81 YEQTKKDKEAKKNQKVI-----NIKEVRLSPTIEAHDIEIKANNARKFLNAGNKVKVTVR 135
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L+ + +E+ V+E P +E + I+
Sbjct: 136 FRGREADYSFKGNKILNSFYEKVEEAGVMEKAPKLEGRNMIMIL 179
>gi|381197131|ref|ZP_09904472.1| translation initiation factor IF-3 [Acinetobacter lwoffii WJ10621]
Length = 165
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRLV + G + +VS EAL A S++ DLVE+ A PPVCKIMDF+K
Sbjct: 1 MNDEIRAKEVRLVDENGEQKGIVSLAEALRAAESVELDLVEIVANAEPPVCKIMDFNKHL 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ + K+K+ K + + + KE++ + D +K + + +++G +VK
Sbjct: 61 FDLKQKQKEAKKKQHQVQV-----KEIKLRPGTDVGDYNVKLRAITKFLEEGNKVKITLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L ++ + +I VVE P +E +Q ++ GP KK
Sbjct: 116 FRGREMAHQQLGLAQLQKVEADVAEIGVVEQSPKMEGRQMGMLL-----GPKKK 164
>gi|408829984|ref|ZP_11214874.1| translation initiation factor IF-3 [Streptomyces somaliensis DSM
40738]
Length = 198
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 155
>gi|315917511|ref|ZP_07913751.1| translation initiation factor IF-3 [Fusobacterium gonidiaformans
ATCC 25563]
gi|317059029|ref|ZP_07923514.1| translation initiation factor IF-3 [Fusobacterium sp. 3_1_5R]
gi|313684705|gb|EFS21540.1| translation initiation factor IF-3 [Fusobacterium sp. 3_1_5R]
gi|313691386|gb|EFS28221.1| translation initiation factor IF-3 [Fusobacterium gonidiaformans
ATCC 25563]
Length = 179
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+NDKI + R++ +G + V+S EAL +A + DLVE+ A PPVCKIM+F K
Sbjct: 17 RINDKIRGKEFRIIGADGEQLGVMSAAEALEIAANQDLDLVEIAATAKPPVCKIMNFGKY 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++E K K+ K + K+ KEV+ + +I+ DL K + +++ ++K +VK
Sbjct: 77 RYEQERKAKEAKKNQ-----KQTVVKEVKVTARIDAHDLDTKVNQIQKFLEKDNKVKVTL 131
Query: 200 LPVGKKEETEDLG 212
+ G+++ LG
Sbjct: 132 VLFGREKMHASLG 144
>gi|124021868|ref|YP_001016175.1| translation initiation factor IF-3 [Prochlorococcus marinus str.
MIT 9303]
gi|166198964|sp|A2C600.1|IF3_PROM3 RecName: Full=Translation initiation factor IF-3
gi|123962154|gb|ABM76910.1| Translation Initiation factor 3 [Prochlorococcus marinus str. MIT
9303]
Length = 219
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V++R EAL +A+ + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPKLRVVDADGTQLGVINREEALDVAKDRELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYNVRIGQAVRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + L L R+ +E+ + ++ P E
Sbjct: 132 VIFRGREIQHTALAETLLRRMAKDLEEQAEIQQAPKRE 169
>gi|384449825|ref|YP_005662427.1| translation initiation factor IF-3 [Chlamydophila pneumoniae
LPCoLN]
gi|269302791|gb|ACZ32891.1| translation initiation factor IF-3 [Chlamydophila pneumoniae
LPCoLN]
Length = 186
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 83 LNDKINAQF----VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
LN KIN Q VRL+ G + +++ +AL LAR DLVEV + PPVCKIMD+
Sbjct: 3 LNFKINRQIRAPKVRLIGSAGEQLGILAIKDALDLAREAGLDLVEVASNSEPPVCKIMDY 62
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y KEKD KA+ + + KEV+ I++ D K + ++KG +VK
Sbjct: 63 GKYRYDLTKKEKDSKKAQHQVRI-----KEVKLKPNIDENDFSTKLKQARTFVEKGNKVK 117
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + ++ +EDI VE+ P + + ++
Sbjct: 118 ITCMFRGRELAYPEHGFKVVQKMSQGLEDIGFVEAEPKLAGRSLICVV 165
>gi|359407037|ref|ZP_09199673.1| translation initiation factor IF-3 [Prevotella stercorea DSM 18206]
gi|357553785|gb|EHJ35523.1| translation initiation factor IF-3 [Prevotella stercorea DSM 18206]
Length = 229
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 22/221 (9%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCK 132
K++K + R+N++I + VR+V + G V++ AL +AR DLVE+ A PPVC+
Sbjct: 2 KNDKMKNQYRVNEQIRVREVRVVSEGGSTVMATRSALEMAREQGVDLVEISPNAQPPVCR 61
Query: 133 IMDFHKEKYQ--KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMD 190
++D+ K YQ K KE +AK +I KE+RF + ++ D K + +
Sbjct: 62 LIDYSKFLYQQKKHAKEMKAKQAKVEI-------KEIRFGPQTDEHDYNFKLKHAQEFLS 114
Query: 191 KGYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHV 246
+G +V+ G+ KE+ E L L R + +E+ + VE P ++ K+ + +
Sbjct: 115 EGNKVRAYVFFRGRSILFKEQGEVL---LLRFANDLEEYAKVEQLPKLDGKKMFLYL--- 168
Query: 247 KFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSV-DIPT 286
P K G +KK + D A + E V ++PT
Sbjct: 169 --APKKAGVVKKSQQKMDREKREAEARSAKETENGVEEMPT 207
>gi|414079363|ref|YP_007000787.1| translation initiation factor IF-3 [Anabaena sp. 90]
gi|413972642|gb|AFW96730.1| translation initiation factor IF-3 [Anabaena sp. 90]
Length = 177
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ EA+ LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGAQLGIITPQEAIQLAEEKELDLVLISDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQ-----HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ +E ++ P E + +I
Sbjct: 128 VMFRGREIQHSDLAETLLKRMATDLEPFGELQQAPKKEGRNMMMLI 173
>gi|353328326|ref|ZP_08970653.1| translation initiation factor IF-3 [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N+ I A+ VRLV G V V +AL +A+ + DLVE+ + PPVCKI+D+ K+
Sbjct: 10 KINEFITAKEVRLVDHNGEMVGIVPLRQALEVAQGVNLDLVEIAPDSTPPVCKILDYSKQ 69
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY + K + K + +T+ KE++ I+ D + K + + G+++KC
Sbjct: 70 KYDAKKKASEAKKKQRALTI-----KEIKLGPNIDNHDYETKLRQTRDFLISGHKIKCTM 124
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAY 240
G++ ++G L RLI EDI+ VE P E Q +
Sbjct: 125 KFRGRELINTEVGVEKLERLIRDTEDIAKVELAPKREGNQYF 166
>gi|402546327|ref|ZP_10843202.1| translation initiation factor IF-3 [Campylobacter sp. FOBRC14]
gi|401017140|gb|EJP75901.1| translation initiation factor IF-3 [Campylobacter sp. FOBRC14]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VR V D+G + V+SR EAL +A DLV V A PPVCKIMD+ K +
Sbjct: 9 LNEDIRAREVRCVGDDGTVYGVISRDEALKIAEKQGLDLVLVAPDAKPPVCKIMDYGKFR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K+K+ K + I + KE++ S KI Q D++ K + G VK
Sbjct: 69 YQQEKKQKEAKKKQKVI-----EVKEIKLSIKIAQNDIKYKVKHAVEFLQDGKHVKFRVF 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ T + G L ++ +L++D++ + P VE
Sbjct: 124 LKGREMSTPEAGVAMLEKVWELVKDVADRDKEPLVE 159
>gi|397686822|ref|YP_006524141.1| translation initiation factor IF-3 [Pseudomonas stutzeri DSM 10701]
gi|395808378|gb|AFN77783.1| translation initiation factor IF-3 [Pseudomonas stutzeri DSM 10701]
Length = 177
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ +N+ I+A+ VRL+ EG ++ VS EAL +A + DLVE+ A PP
Sbjct: 2 RQDKRTAPKAPINENISAREVRLIGAEGEQIGIVSIDEALRVAEEAKLDLVEISADATPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KEV+F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQVAAAKKNQKQIQVKEVKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAIIRHVKF 248
+G R K G++ ++LG L + ++ + + VE P +E +Q +I
Sbjct: 117 SEGDRAKVSLRFRGREMAHQELGMELLKRVEADLAEYGSVEQHPKMEGRQLIMVI----- 171
Query: 249 GPSKK 253
P KK
Sbjct: 172 APKKK 176
>gi|451940085|ref|YP_007460723.1| translation initiation factor IF-3 [Bartonella australis Aust/NH1]
gi|451899472|gb|AGF73935.1| translation initiation factor IF-3 [Bartonella australis Aust/NH1]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ EG VV+ EALA+A + DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPCVQLINVEGQHQGVVATQEALAMAADVGLDLVEIVPNAEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K A++ K + KE++ ++ D ++K V+R +D G +
Sbjct: 65 DLGKLKYQNQKK-----AAETRKKQKIIEIKEIKIRPNVDIHDYEVKLRAVRRFIDNGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +ES P +E +Q +I
Sbjct: 120 VKVTLRFRGREMAHQDLGMKLLQRVKEDTNEIAKIESEPKLEGRQMVMVI 169
>gi|91787976|ref|YP_548928.1| translation initiation factor 3 [Polaromonas sp. JS666]
gi|91697201|gb|ABE44030.1| bacterial translation initiation factor 3 (bIF-3) [Polaromonas sp.
JS666]
Length = 177
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+VS EAL LA DLVE+ A PPVC++MD+ K KY E K+ AK+K +
Sbjct: 17 IVSIMEALRLAGEADVDLVEISPTAVPPVCRLMDYGKFKYA-EQKKAAEAKSKQKVI--- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KE++F + D +K +KR +++G + K G++ ++LG L+R+ D
Sbjct: 73 -EIKEIKFRPGTDDGDYNIKLRNIKRFLEEGDKCKITLRFRGREITHQELGLALLARIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ D+ VVE P +E +Q +I
Sbjct: 132 ELADLIVVEQFPKLEGRQMVMMI 154
>gi|153004742|ref|YP_001379067.1| translation initiation factor IF-3 [Anaeromyxobacter sp. Fw109-5]
gi|166198947|sp|A7HBI7.1|IF3_ANADF RecName: Full=Translation initiation factor IF-3
gi|152028315|gb|ABS26083.1| translation initiation factor IF-3 [Anaeromyxobacter sp. Fw109-5]
Length = 229
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR + EG + V+ +ALA A+ L DLVEV A PPVCKIMD+ K
Sbjct: 17 RTNRRIKAREVRAIGPEGEQLGVLPIEQALARAQELGMDLVEVSPMAKPPVCKIMDYGKF 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY ++ K+ + K + + L KEV+ + E+ D K V+ + + + +
Sbjct: 77 KYLEKKKQNEAKKKQVVVQL-----KEVKLRPRTEEHDYATKIKKVREFLGESNKARITV 131
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +LG L R+I+ + +++V+E+ P +E +Q + I+
Sbjct: 132 TFRGREMSHRELGQKVLQRIIEDLREVAVIEAAPRMEGRQMFMIL 176
>gi|406915489|gb|EKD54565.1| translation initiation factor IF-3 [uncultured bacterium]
Length = 173
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A VRL+ EG++ VV EA L+ DLVE+ A PPVC+IM+F K
Sbjct: 9 PRINEEIKAPEVRLIDAEGNQLGVVPSREARRLSEEAALDLVEISPDAKPPVCRIMNFGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
YQ+ ++ K + + L KEV+ E+ D Q+K ++ R + +G + K
Sbjct: 69 FTYQQSKRKAAAKKKQKQVHL-----KEVKLRPATEEADYQVKLRSIIRFLSEGDKAKVT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
G++ +LG + R+I + D+ ++E P +E +Q +I GP K
Sbjct: 124 LRFRGREMSHPELGIELMERIITDLVDVGIIEQRPKMEGRQMVMVI-----GPKK 173
>gi|338733287|ref|YP_004671760.1| translation initiation factor IF-3 [Simkania negevensis Z]
gi|336482670|emb|CCB89269.1| translation initiation factor IF-3 [Simkania negevensis Z]
Length = 167
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VRL+ +G + VVS +A+ A DLVE+ A+PPVCKI+D+ K
Sbjct: 2 RVNREIRAPKVRLIGKDGSQIGVVSIKDAMMHAEQAGLDLVEISPNASPPVCKIIDYGKY 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+YQ KE++ KA+ L KE++ I++ DL K + ++KG +V+
Sbjct: 62 RYQITKKERESKKAQHQAKL-----KEIKVKPNIDEHDLMTKIKHAREFIEKGNKVRVTC 116
Query: 200 LPVGKKEETEDLGGYLS-RLIDLIEDISVVESGP 232
+ G++ +LG ++ R + ++DI+ VE+ P
Sbjct: 117 MFRGREMAHPELGEKVTERFVQELKDIAQVEASP 150
>gi|154175144|ref|YP_001407385.1| translation initiation factor IF-3 [Campylobacter curvus 525.92]
gi|166198950|sp|A7GVZ3.1|IF3_CAMC5 RecName: Full=Translation initiation factor IF-3
gi|153793186|gb|EAT99714.2| translation initiation factor IF-3 [Campylobacter curvus 525.92]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VR V D+G + VVSR EAL +A DLV V A PPVCKIMD+ K +
Sbjct: 9 LNEDIRAREVRCVGDDGTVYGVVSRDEALKIAEKQGLDLVLVAPDAKPPVCKIMDYGKFR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K+K+ K + I + KE++ S KI Q D+ K + G VK
Sbjct: 69 YQQEKKQKEAKKKQKVIEI-----KEIKLSIKIAQNDINYKVKHAVEFLQDGKHVKFRVF 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ T + G L ++ +L++D++ + P VE
Sbjct: 124 LKGREMSTPEAGVAMLEKVWELVKDVADRDKEPLVE 159
>gi|434394492|ref|YP_007129439.1| bacterial translation initiation factor 3 (bIF-3) [Gloeocapsa sp.
PCC 7428]
gi|428266333|gb|AFZ32279.1| bacterial translation initiation factor 3 (bIF-3) [Gloeocapsa sp.
PCC 7428]
Length = 175
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 8/163 (4%)
Query: 84 NDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
N++I +R++ +G ++ +S EAL +A + DLV + KA+PPVC+IMD+ K K+
Sbjct: 14 NEQIRFPKIRVIDPDGAQLGLLSPREALQIAEEKELDLVLLSDKADPPVCRIMDYGKYKF 73
Query: 142 QKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALP 201
++E K ++ K + D KEV+ KIE+ D +++ + +R + G +VK +
Sbjct: 74 EQEKKAREARKKQ-----HTADVKEVKMRYKIEEHDYKVRVNQAQRFLKDGDKVKATVMF 128
Query: 202 VGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + DL L R+ +E + V+ P E K +I
Sbjct: 129 RGREIQHSDLAETLLKRMATDLEQVGEVQQAPKKEGKNMMMLI 171
>gi|383831061|ref|ZP_09986150.1| translation initiation factor IF-3 [Saccharomonospora xinjiangensis
XJ-54]
gi|383463714|gb|EID55804.1| translation initiation factor IF-3 [Saccharomonospora xinjiangensis
XJ-54]
Length = 222
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 56 FCNNVRFFAAPVQAQQKKDEKETSGP-----RLNDKINAQFVRLVLDEGHKV--VSRHEA 108
C + ++ QQ + GP R+N++I VRLV G +V V +A
Sbjct: 12 LCRGL-WYVGTRSRQQNDRHLDQGGPISSETRINERIRVPEVRLVGPNGEQVGIVRIEDA 70
Query: 109 LALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVR 168
L LA+ DLVEV +A PPV K+MD+ K KY+ K ++ ++ +T+ KE +
Sbjct: 71 LRLAQEADLDLVEVAPQARPPVAKLMDYGKFKYESAQKARE-SRRNQQLTV----IKEQK 125
Query: 169 FSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISV 227
KI+ D K V R ++ G +VK + G+++ +LG L RL D + ++
Sbjct: 126 LRPKIDPHDYATKKGHVSRFLEAGNKVKVTIMFRGREQSRPELGFRLLQRLADDVSELGF 185
Query: 228 VESGP 232
VES P
Sbjct: 186 VESKP 190
>gi|354568223|ref|ZP_08987389.1| Translation initiation factor IF-3 [Fischerella sp. JSC-11]
gi|353541188|gb|EHC10658.1| Translation initiation factor IF-3 [Fischerella sp. JSC-11]
Length = 177
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + ++S EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGAQLGILSPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQH-----TADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + DL L R+ +E ++ V+ P E
Sbjct: 128 VMFRGREIQHSDLAEDLLKRMATDLEAVAEVQQAPKKE 165
>gi|389704868|ref|ZP_10185972.1| translation initiation factor IF-3 [Acinetobacter sp. HA]
gi|388611112|gb|EIM40221.1| translation initiation factor IF-3 [Acinetobacter sp. HA]
Length = 165
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRLV + G + +VS EAL A S++ DLVE+ A PPVCKIMDF+K
Sbjct: 1 MNDEIRAKEVRLVDENGEQKGIVSLTEALRAAESVELDLVEIVANAEPPVCKIMDFNKHL 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ + K+K+ K + + + KE++ + D +K + + +++G +VK
Sbjct: 61 FDLKQKQKEAKKKQHQVQV-----KEIKLRPGTDVGDYNVKLRAILKFLEEGNKVKITLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L ++ + +I VVE P +E +Q ++ GP KK
Sbjct: 116 FRGREMAHQQLGLAQLQKIEADVAEIGVVEQSPKMEGRQMGMLL-----GPKKK 164
>gi|365826334|ref|ZP_09368258.1| hypothetical protein HMPREF0975_00041 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365266167|gb|EHM95880.1| hypothetical protein HMPREF0975_00041 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 200
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRVEDALRLAEEADLDLVEVAPDARPPVCKLMDYGKFKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI++ D K V+R + G +VKC+ G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDEHDYATKRGHVERFLKGGDKVKCIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+LG L L + + ++ +ES P + + ++ V+
Sbjct: 116 ELGIRLLQGLAEEMAELGTIESHPRQDGRNMVMVLAPVR 154
>gi|317153729|ref|YP_004121777.1| translation initiation factor IF-3 [Desulfovibrio aespoeensis
Aspo-2]
gi|316943980|gb|ADU63031.1| translation initiation factor IF-3 [Desulfovibrio aespoeensis
Aspo-2]
Length = 155
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 8/159 (5%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+R+V ++G + V+ +AL A+ DLVEV A+PPVCKIMD+ K KYQ++ K ++
Sbjct: 1 MRVVDEDGEQLGVLDTRDALDRAKEKGLDLVEVAPNADPPVCKIMDYGKFKYQQQKKLQE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ I + KEV+F K ++ D Q K + + + +D G R K G++ +
Sbjct: 61 AKKKQTVIKI-----KEVKFRPKTDEHDYQTKLNKILQFLDDGDRCKVTVFFRGREIVHK 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
D G L R++ D++ VES P E + ++ VK
Sbjct: 116 DRGLKMLERVVTDTVDVAKVESRPMSEGRTMTMMLAPVK 154
>gi|385677188|ref|ZP_10051116.1| translation initiation factor IF-3 [Amycolatopsis sp. ATCC 39116]
Length = 204
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +AL LA+ DLVEV +A PPVCK+MDF K
Sbjct: 26 RINERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVCKLMDFGKF 85
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ ++ +T+ KE + KI+Q D + K V R + G +VK
Sbjct: 86 KYESAQKARE-SRRNQQLTV----IKEQKLRPKIDQHDYETKKGHVSRFLAAGNKVKVTI 140
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L +L + + ++ VE+ P
Sbjct: 141 MFRGREQSRPELGFRLLQKLSEDVAELGYVEASP 174
>gi|333994338|ref|YP_004526951.1| translation initiation factor IF-3 [Treponema azotonutricium ZAS-9]
gi|333736710|gb|AEF82659.1| translation initiation factor IF-3 [Treponema azotonutricium ZAS-9]
Length = 178
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I + VRL+ DEG + ++S EAL LA+ DLVEV A PPV KI+D+ K
Sbjct: 7 RINEQIRVREVRLIRDEGEQQGIMSTLEALELAKGQGLDLVEVAPTAVPPVVKILDYGKF 66
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++ E K +D S K KE+R KI++ DL K+ VK + +G +VK
Sbjct: 67 KFENEKKVRD-----SKKKQKLLKLKEIRMQPKIDEHDLDFKSKHVKEFLAEGNKVKVTV 121
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGG 255
G++ +LG L ++ IE V++ P +E + ++ G +K G
Sbjct: 122 RFRGRELAHTELGLDVLKDVLARIEGEYVMDKPPAMEGRFMSMVLSPKSKGAAKAGA 178
>gi|302561588|ref|ZP_07313930.1| translation initiation factor IF-3 [Streptomyces griseoflavus
Tu4000]
gi|302479206|gb|EFL42299.1| translation initiation factor IF-3 [Streptomyces griseoflavus
Tu4000]
Length = 198
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 155
>gi|374292955|ref|YP_005039990.1| translation initiation factor IF-3 [Azospirillum lipoferum 4B]
gi|357424894|emb|CBS87774.1| Translation initiation factor IF-3 [Azospirillum lipoferum 4B]
Length = 144
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS +AL A DLVEV +A PPVCKI+D+ K KY+ + K+ + A+ K I
Sbjct: 4 VVSLRDALLAAEDAGLDLVEVAPQAEPPVCKILDYGKFKYEAQ-KKANEARKKQKII--- 59
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KE++ I+ D +K + +R +++G +VK G++ +DLG L R+ D
Sbjct: 60 -EVKEIKLRPNIDDNDYDVKMRSARRFLEEGDKVKVTMRFRGREMAHQDLGMNVLVRVRD 118
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+++++ VE P +E +Q ++
Sbjct: 119 ALDELAKVEQMPKLEGRQMIMVL 141
>gi|303229418|ref|ZP_07316208.1| translation initiation factor IF-3 [Veillonella atypica
ACS-134-V-Col7a]
gi|302515954|gb|EFL57906.1| translation initiation factor IF-3 [Veillonella atypica
ACS-134-V-Col7a]
Length = 182
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A+ +R+V E ++ +S EALALA DLVE+ A PPV +IM++ K
Sbjct: 19 PRINEEIRARELRVVGPENEQIGIMSGREALALAEEKHLDLVEIAPNAKPPVARIMNYGK 78
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ +EK+ K + +TL KEV+ IE D +K + + +G +VK
Sbjct: 79 YRYEQQKREKEAKKKQKIVTL-----KEVKLRPHIEDHDFYVKMKNASKFLGEGNKVKVT 133
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R + +++ + +E +E + I+
Sbjct: 134 IMFRGRELSHPELGMAVLTRFAEELKETASIEKAAKLEGRNMTMIL 179
>gi|121605746|ref|YP_983075.1| translation initiation factor IF-3 [Polaromonas naphthalenivorans
CJ2]
gi|120594715|gb|ABM38154.1| bacterial translation initiation factor 3 (bIF-3) [Polaromonas
naphthalenivorans CJ2]
Length = 174
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS EAL LA DLVE+ A PPVC++MD+ K KY ++ K+ AK+K +
Sbjct: 17 VVSLMEALRLAGEADVDLVEISPTAVPPVCRLMDYGKFKYAEQ-KKAAEAKSKQKVI--- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KE++F + D +K +KR +D G + K G++ ++LG L+R+ D
Sbjct: 73 -EVKEIKFRPGTDDGDYNIKLRNIKRFLDDGDKCKITLRFRGREITHQELGLALLARIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ D+ +VE P +E +Q +I
Sbjct: 132 ELADLILVEQFPKLEGRQMVMMI 154
>gi|339443408|ref|YP_004709413.1| translation initiation factor IF3 [Clostridium sp. SY8519]
gi|338902809|dbj|BAK48311.1| translation initiation factor IF3 [Clostridium sp. SY8519]
Length = 179
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 22/168 (13%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S ++N++I + VRL+ +G + ++S EA +AR DLV++ A PPVCKI+D
Sbjct: 12 SSKHQINEQIRDREVRLIGADGEQLGIMSAKEAQQIAREADLDLVKIAPNAKPPVCKIVD 71
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K +Y++ KEK K + + + KEVR S IE DL K + ++ + KG +V
Sbjct: 72 YGKFRYEQSRKEKQAKKNQKTV-----EIKEVRLSPNIEANDLNTKINAARKFLSKGNKV 126
Query: 196 KC--------MALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVE 235
K MA + +D LS DISVV+ P +E
Sbjct: 127 KVTLRFRGREMAHVSSSRHILDDFAEALS-------DISVVDKAPKME 167
>gi|384430744|ref|YP_005640104.1| translation initiation factor IF-3 [Thermus thermophilus
SG0.5JP17-16]
gi|333966212|gb|AEG32977.1| translation initiation factor IF-3 [Thermus thermophilus
SG0.5JP17-16]
Length = 144
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 84/143 (58%), Gaps = 8/143 (5%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD-RAKAKSDITLKKGDCK 165
EAL LA+ DLV V A+PPV +IMD+ K +Y++++ EK+ R KA K+ + K
Sbjct: 5 EALRLAQEQDLDLVLVGPNADPPVARIMDYSKWRYEQQMAEKEARKKA------KRTEVK 58
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIED 224
++F KI++ D Q K +KR + +G++VK + G++ +LG L+R+ + +++
Sbjct: 59 SIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREMAHPELGEKILNRVTEDLKN 118
Query: 225 ISVVESGPHVERKQAYAIIRHVK 247
++VVE P + + ++ VK
Sbjct: 119 LAVVEMKPEMLGRDMNMLLAPVK 141
>gi|365158097|ref|ZP_09354338.1| translation initiation factor IF-3 [Bacillus smithii 7_3_47FAA]
gi|363621926|gb|EHL73108.1| translation initiation factor IF-3 [Bacillus smithii 7_3_47FAA]
Length = 167
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I ++ VRL+ G + + S++EAL +A DLV V A PPV +IMD+ K K
Sbjct: 3 VNEGIRSREVRLIDQNGEQLGIKSKNEALEIAARANLDLVLVAPNAKPPVARIMDYGKYK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 63 FEQQKKEKEARKKQKVI-----NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L R + +D++ VE+ P ++ + + ++
Sbjct: 118 FKGRAITHKELGQKVLDRFAEACDDVATVETKPKMDGRSMFIVL 161
>gi|329944515|ref|ZP_08292680.1| translation initiation factor IF-3 [Actinomyces sp. oral taxon 170
str. F0386]
gi|328530280|gb|EGF57159.1| translation initiation factor IF-3 [Actinomyces sp. oral taxon 170
str. F0386]
Length = 199
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRVEDALRLAEEADLDLVEVAPDARPPVCKLMDYGKFKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI++ D K V+R + G +VKC+ G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDEHDYATKRGHVERFLKGGDKVKCIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
+LG L L + + ++ +ES P + + ++ V+
Sbjct: 116 ELGIRLLQGLAEEMAELGTIESHPRQDGRNMVMVLAPVR 154
>gi|212704421|ref|ZP_03312549.1| hypothetical protein DESPIG_02476 [Desulfovibrio piger ATCC 29098]
gi|212672142|gb|EEB32625.1| translation initiation factor IF-3 [Desulfovibrio piger ATCC 29098]
Length = 176
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
G R N+ I A+ VR++ +G + ++ R+EA+ALA+ DLVEV + PPVC+IMD+
Sbjct: 11 GVRRNEMIRAREVRVIGADGEQLGILQRNEAIALAKEAGMDLVEVASTSEPPVCRIMDYG 70
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+++ K+++ K +S + + KE++ K + D + K ++R ++ G R K
Sbjct: 71 KFKYEQQKKKQEAKKRQSVVQI-----KEIKVRPKTDDHDYETKLRHIRRFLEDGDRCKV 125
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ +D G L R++ + D++ V+ P E
Sbjct: 126 TVFFRGREIVHKDRGISILERVVQDLADVAKVDQEPRAE 164
>gi|160893268|ref|ZP_02074056.1| hypothetical protein CLOL250_00814 [Clostridium sp. L2-50]
gi|156865351|gb|EDO58782.1| translation initiation factor IF-3 [Clostridium sp. L2-50]
Length = 164
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR++ ++G ++S +AL LA+ + DLV++ +A PPVCKI+D+ K +
Sbjct: 2 INEQIRDREVRVIGEDGQVIGIMSSRDALKLAKEAELDLVKIAPQAKPPVCKIIDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ KEK+ K + K + KEVR S I+ DL K + ++ + G +VK
Sbjct: 62 YELARKEKEARKKQ-----KTMEIKEVRLSPNIDTNDLNTKVNQARKFLTHGDKVKVTLR 116
Query: 201 PVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
G++ E G L + + DI+V++ E
Sbjct: 117 FRGRELAHVEQTKGILDEFAEKLSDIAVIDKPAKFE 152
>gi|452975445|gb|EME75264.1| translation initiation factor IF-3 [Bacillus sonorensis L12]
Length = 166
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + SR EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 2 VNEGIRAREVRLIGQNGDQLGIKSRQEALEIAGRANLDLVLVAANAKPPVCRIMDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I L KEVR S IE+ D K + + KG +VK
Sbjct: 62 FEQQKKEKEARKNQKIINL-----KEVRLSPGIEEHDFNTKLRNAIKFLQKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + +++ VE+ P ++ + + ++
Sbjct: 117 FKGRAITHKEIGQRVLDRFSEACAEVATVETKPKMDGRSMFLVL 160
>gi|359398306|ref|ZP_09191328.1| translation initiation factor IF-3 [Novosphingobium
pentaromativorans US6-1]
gi|357600313|gb|EHJ62010.1| translation initiation factor IF-3 [Novosphingobium
pentaromativorans US6-1]
Length = 173
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR N+ I A VR++ + G V+ EA+ A + DLVEV A+PPVCK +D
Sbjct: 8 SGPRYNNFIQADKVRVIDENGENIGVMYTREAIEQAADVGLDLVEVSPNADPPVCKFLDV 67
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y+ + K K T K + KE++ I+ D +K V+R + G +VK
Sbjct: 68 GKYRYEAQKKANAARK-----TQKTQEIKEIKMRPNIDDHDYDVKMRNVQRFIGDGDKVK 122
Query: 197 CMALPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ + LG L R + +E+I+ +E+ P +E +Q ++
Sbjct: 123 VTLRFRGRELSHQQLGMDLLRRVQADVEEIAKIEAYPRMEGRQMLMVL 170
>gi|417027791|ref|ZP_11947707.1| translation initiation factor IF-3, partial [Lactobacillus
rhamnosus MTCC 5462]
gi|328479650|gb|EGF48828.1| translation initiation factor IF-3 [Lactobacillus rhamnosus MTCC
5462]
Length = 162
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ G + V S +ALA+A D+V V A PPV +IMD+ K +
Sbjct: 3 VNDSIRAREVRLISQTGEQLGVKSTRDALAIAEDANLDVVLVSPNAKPPVARIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ + KE+D K + +T+ KE+R S I + + + ++KG +VK
Sbjct: 63 FELQKKERDARKKQKTVTI-----KEIRLSPTIGEAGFNTRLKNATKFLNKGDKVKVSVR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +DLG L ++ D ++DI+ VE+ P ++ + + ++
Sbjct: 118 FRGRAITHKDLGRKVLEQMADAVKDIAAVETHPKMDGRSMFLML 161
>gi|334140417|ref|YP_004533619.1| translation initiation factor IF-3 [Novosphingobium sp. PP1Y]
gi|333938443|emb|CCA91801.1| translation initiation factor IF-3 [Novosphingobium sp. PP1Y]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR N+ I A VR++ + G V+ EA+ A + DLVEV A+PPVCK +D
Sbjct: 7 SGPRYNNFIQADKVRVIDENGENIGVMYTREAIEQAADVGLDLVEVSPNADPPVCKFLDV 66
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y+ + K K T K + KE++ I+ D +K V+R + G +VK
Sbjct: 67 GKYRYEAQKKANAARK-----TQKTQEIKEIKMRPNIDDHDYDVKMRNVQRFIGDGDKVK 121
Query: 197 CMALPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ + LG L R + +E+I+ +E+ P +E +Q ++
Sbjct: 122 VTLRFRGRELSHQQLGMDLLRRVQADVEEIAKIEAYPRMEGRQMLMVL 169
>gi|389793204|ref|ZP_10196378.1| translation initiation factor IF-3 [Rhodanobacter fulvus Jip2]
gi|388434937|gb|EIL91864.1| translation initiation factor IF-3 [Rhodanobacter fulvus Jip2]
Length = 158
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VR++ E + +++R EALALA+ DLVE+ +PPVC+IMD+ K K++ + K +
Sbjct: 4 VRVIGAEAEQLGILTRDEALALAQEAGMDLVEIQPNGDPPVCRIMDYGKFKFEAQKKAQA 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K + + + KEV+F + D Q+K + R +++G +VK G++ +
Sbjct: 64 AKKKQKQVEI-----KEVKFRPVTDVGDYQIKLRNMLRFLEEGDKVKVTIRFRGREMSHQ 118
Query: 210 DLGGYLSRLI-DLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
DLG L+R I + I D VES P +E +Q +I GP KK
Sbjct: 119 DLGQNLARKIQEDIGDNGQVESYPRLEGRQMVMMI-----GPKKK 158
>gi|15618898|ref|NP_225184.1| translation initiation factor IF-3 [Chlamydophila pneumoniae
CWL029]
gi|15836521|ref|NP_301045.1| translation initiation factor IF-3 [Chlamydophila pneumoniae J138]
gi|16752037|ref|NP_445403.1| translation initiation factor IF-3 [Chlamydophila pneumoniae AR39]
gi|7387796|sp|Q9Z6R9.1|IF3_CHLPN RecName: Full=Translation initiation factor IF-3
gi|4377318|gb|AAD19127.1| Initiation Factor 3 [Chlamydophila pneumoniae CWL029]
gi|7189777|gb|AAF38654.1| translation initiation factor 3 [Chlamydophila pneumoniae AR39]
gi|8979363|dbj|BAA99197.1| initiation factor 3 [Chlamydophila pneumoniae J138]
Length = 186
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 83 LNDKINAQF----VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
LN KIN Q VRL+ G + +++ +AL LAR DLVEV + PPVCKIMD+
Sbjct: 3 LNFKINRQIRAPKVRLIGSAGEQLGILAIKDALDLAREAGLDLVEVASNSEPPVCKIMDY 62
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y KEKD KA+ + + KEV+ I++ D K + ++KG +VK
Sbjct: 63 GKYRYGLTKKEKDSKKAQHQVRI-----KEVKLKPNIDENDFSTKLKQARTFVEKGNKVK 117
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + ++ +EDI VE+ P + + ++
Sbjct: 118 ITCMFRGRELAYPEHGFKVVQKMSQGLEDIGFVEAEPKLAGRSLICVV 165
>gi|119510904|ref|ZP_01630027.1| translation initiation factor IF-3 [Nodularia spumigena CCY9414]
gi|119464432|gb|EAW45346.1| translation initiation factor IF-3 [Nodularia spumigena CCY9414]
Length = 177
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + ++ EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGAQLGIMPPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQ-----HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL + L R+ +E + ++ P E + +I
Sbjct: 128 VMFRGREIQHSDLAEHLLKRMAKDLEPLGELQQAPKKEGRNMMMLI 173
>gi|87123250|ref|ZP_01079101.1| translation initiation factor [Synechococcus sp. RS9917]
gi|86168970|gb|EAQ70226.1| translation initiation factor [Synechococcus sp. RS9917]
Length = 220
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 8/178 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+ R +AL +A+ + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDADGAQLGVIDREKALEVAKDRELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ R + G +VKC
Sbjct: 77 YKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQATRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGG 255
+ G++ + L L R+ +E+ + ++ P E + + K +KK G
Sbjct: 132 VIFRGREIQHTALAETLLRRMAKDLEEQAEIQQAPKREGRNMIMFLTPRKTPLAKKDG 189
>gi|429726313|ref|ZP_19261114.1| translation initiation factor IF-3 [Prevotella sp. oral taxon 473
str. F0040]
gi|429146901|gb|EKX89939.1| translation initiation factor IF-3 [Prevotella sp. oral taxon 473
str. F0040]
Length = 274
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 19/208 (9%)
Query: 37 KICEAKK-PFWESAVKTPNDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLV 95
K+CE ++ ++ SA+ ++ + P K++K R+N++I A+ VR++
Sbjct: 20 KLCELQENAYFCSAINRLSNLQTQIYRHLRP-----NKNDKLKQQYRVNEQIRAREVRVI 74
Query: 96 LDEGHKVVS-RHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAK 154
+EG VV +AL +A+ DLVE+ A PPVC+++DF K YQ++ ++K+ KAK
Sbjct: 75 PEEGESVVMPSRDALRMAQQQGVDLVEISPNAQPPVCRLVDFSKFIYQQKKRQKE-LKAK 133
Query: 155 SDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGK----KEETED 210
K + KE+RF + + D K K + +G +VK G+ KE+ E
Sbjct: 134 Q----VKVEVKEIRFGPQTDDHDYNFKLKHAKGFLSEGDKVKAYVFFRGRSILFKEQGEV 189
Query: 211 LGGYLSRLIDLIEDISVVESGPHVERKQ 238
L L R + +E+ VES P +E K+
Sbjct: 190 L---LLRFANDLEEYGKVESMPVLEGKR 214
>gi|332284529|ref|YP_004416440.1| translation initiation factor IF-3 [Pusillimonas sp. T7-7]
gi|330428482|gb|AEC19816.1| translation initiation factor IF-3 [Pusillimonas sp. T7-7]
Length = 163
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ +G + VV EAL L+ + DLVE+ A PPVC++MD+ K KYQ E K +
Sbjct: 1 MRLIGVDGEQLGVVKTSEALQLSEQHEVDLVEIAPNAAPPVCRLMDYGKFKYQ-EQKRQQ 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AKAK + KEV+F ++ D Q+K ++R +++G + K G++ +
Sbjct: 60 EAKAKQKVI----QVKEVKFRPGTDEGDYQVKLRNLRRFIEEGDKAKVTLRFRGREMAHQ 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+LG L R+ D + ++ VE+ P +E +Q ++ P KK
Sbjct: 116 ELGMRVLERVRDDLAELCQVEAMPKLEGRQMVMVL-----APRKKA 156
>gi|95930295|ref|ZP_01313033.1| translation initiation factor IF-3 [Desulfuromonas acetoxidans DSM
684]
gi|95133758|gb|EAT15419.1| translation initiation factor IF-3 [Desulfuromonas acetoxidans DSM
684]
Length = 152
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 13/160 (8%)
Query: 97 DEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAK 154
DEG + V+S +AL A DLVEV A PPVC+IMD+ K KYQ + + + K
Sbjct: 3 DEGEQLGVMSLDDALEAAADRGLDLVEVSPNAKPPVCRIMDYGKYKYQLQKRAAEAKKKA 62
Query: 155 SDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-G 213
+ + + KEV+ K E D +K V+R +D G +VK + G++ + G
Sbjct: 63 ARV-----EVKEVKLRPKTEIHDFNVKVKNVRRFLDAGNKVKVTIMFRGREVTHPEFGRE 117
Query: 214 YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
L R+ D + DI V+E P ++ + H+ P+KK
Sbjct: 118 LLQRVADEVADIGVIEFFPSMQGR-----FMHMVMAPNKK 152
>gi|219850024|ref|YP_002464457.1| translation initiation factor IF-3 [Chloroflexus aggregans DSM
9485]
gi|219544283|gb|ACL26021.1| translation initiation factor IF-3 [Chloroflexus aggregans DSM
9485]
Length = 252
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 90/157 (57%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A+ VRL+ + G +V V EALA+A DLVEV A PPVC+++D+ K
Sbjct: 6 RINNRIRAREVRLIDENGTQVGIVPLREALAMAEERGYDLVEVAPNAVPPVCRLLDYGKF 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y++ KE++ + + K+ + K++R K + D+ +KA+ +R + G +VK
Sbjct: 66 RYEQSKKEREARRNQ-----KQSELKQIRLMPKTDDHDVAVKANQARRFLLAGDKVKFNL 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ ++G L + + + DI+++E P +E
Sbjct: 121 RFRGREVAHPEIGRKMLDEIAEQLSDIAIIEQKPLME 157
>gi|254369558|ref|ZP_04985569.1| hypothetical protein FTAG_01445 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122512|gb|EDO66647.1| hypothetical protein FTAG_01445 [Francisella tularensis subsp.
holarctica FSC022]
Length = 178
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 70 QQKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKAN 127
++KK K +N++I A+ VRLV +G + VVS +EALALA DLVE+ AN
Sbjct: 2 RRKKIIKTDKKAPINEQIKAKEVRLVGVDGQQIGVVSINEALALAEEADVDLVEMVANAN 61
Query: 128 PPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
PPVC++MD Y K L E+ + KA++ K+ KEV+ + D Q+K + +
Sbjct: 62 PPVCRLMD-----YGKYLFEQGKKKAQAKKNQKQTQVKEVKLRPVTDVGDYQVKLRNLIK 116
Query: 188 LMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHV 246
++KG +VK G++ ++LG L + + + VVE P +E +Q ++
Sbjct: 117 FLEKGDKVKVTLRFRGREMSHKELGMEMLQHMANDAAEYGVVEHQPKLEGRQMIMVL--- 173
Query: 247 KFGPSKK 253
GP KK
Sbjct: 174 --GPKKK 178
>gi|320536886|ref|ZP_08036879.1| translation initiation factor IF-3 [Treponema phagedenis F0421]
gi|320146269|gb|EFW37892.1| translation initiation factor IF-3 [Treponema phagedenis F0421]
Length = 174
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E G R+N++I + VRL+ + G + +V EAL +A+ + DLVEV +ANPPVCKI+
Sbjct: 3 EGKGLRVNEQIRIREVRLIDEAGQQKGIVPTVEALRMAKDINLDLVEVAPQANPPVCKIL 62
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K +++ E K +D S K KE+R KI D+ KA +++ +D G +
Sbjct: 63 DYGKYRFEMEKKLRD-----SKKKQKLQTLKEIRMQPKINDHDMNFKAKHIQKFLDGGDK 117
Query: 195 VKCMALPVGKKEETEDLG 212
VK G++ +LG
Sbjct: 118 VKVTIRFRGRELAHTNLG 135
>gi|389577576|ref|ZP_10167604.1| translation initiation factor IF-3 [Eubacterium cellulosolvens 6]
gi|389313061|gb|EIM57994.1| translation initiation factor IF-3 [Eubacterium cellulosolvens 6]
Length = 176
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 13/169 (7%)
Query: 73 KDEKETSG-PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPP 129
K+ KE S ++N++I + +RL+ + G + V+S EA +A+ DLV+V A PP
Sbjct: 2 KEGKEISNEAQINEQIRDREIRLIGENGEQLGVMSSKEAFQMAQDAGLDLVKVAPMAKPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VCKI+D+ K +Y++ +EK+ K + + D KE+R S I+ DL K ++ +
Sbjct: 62 VCKIVDYGKYRYEQARREKEARKKQHTV-----DIKEIRMSPNIDTNDLNTKVGAARKFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLIDL---IEDISVVESGPHVE 235
KG +VK G+ E + L+D +EDI +VE P +E
Sbjct: 117 AKGDKVKVTIRFRGR--EMAHMQASRPILLDFAKALEDICIVEKQPKIE 163
>gi|299066587|emb|CBJ37777.1| Translation initiation factor IF-3 [Ralstonia solanacearum CMR15]
Length = 183
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A +RL EG + +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 18 RINREITAPEIRLTGVEGEQLGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ AK K + KEV+F + D ++K +KR +D+G R K
Sbjct: 78 KYQ-EQKKAHEAKLKQKVI----QVKEVKFRPGTDDGDYEVKLRNLKRFLDEGDRAKITL 132
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +++G L RL +E+ + VE P +E +Q ++
Sbjct: 133 RFRGREMAHQEIGARMLERLKVDLEEYAQVEQMPKMEGRQMVMML 177
>gi|427409143|ref|ZP_18899345.1| translation initiation factor IF-3 [Sphingobium yanoikuyae ATCC
51230]
gi|425711276|gb|EKU74291.1| translation initiation factor IF-3 [Sphingobium yanoikuyae ATCC
51230]
Length = 215
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR N+ I VR++ DEG V+ EA+ A + DLVEV A+PPVCK +D
Sbjct: 50 SGPRYNEFITVPKVRVIDDEGENLGVMFTQEAIEQAADVGLDLVEVSPNADPPVCKFLDI 109
Query: 137 HKEKYQKELKEKDRAKAKSDI---TLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
K KY+ A+ K++I T K + KE++ I+ D K V + G
Sbjct: 110 GKFKYE--------AQKKANIARKTQKTQELKEIKMRPNIDDHDYDTKMKKVHDFIGDGD 161
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ + LG L R+ + + +I+ VE+ P +E +Q ++
Sbjct: 162 KVKITLRFRGRELSHQQLGMNLLQRVAENVAEIAKVEAYPRMEGRQMLMVL 212
>gi|224531854|ref|ZP_03672486.1| translation initiation factor IF-3 [Borrelia valaisiana VS116]
gi|224511319|gb|EEF81725.1| translation initiation factor IF-3 [Borrelia valaisiana VS116]
Length = 186
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
++N +I A+ VR++ + G +V+ +A+ A+ DLVEV +PPVCKI+D+ K K
Sbjct: 21 KINYRIKAREVRVIFENGTQEVLPIEDAIKKAKEAGLDLVEVSPNVSPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K+ + + +G +VK
Sbjct: 81 FHQEKRQKEQKKNQKVIKL-----KEVRMQPKIDTHDLDFKSKNILTFLKEGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L+ +++ + D++ V+ES +E K + I+
Sbjct: 136 FRGRELAHTYLGYGILNSILEKVGDVNYVLESAAKMEGKTMFLIV 180
>gi|90961471|ref|YP_535387.1| translation initiation factor IF-3 [Lactobacillus salivarius
UCC118]
gi|90820665|gb|ABD99304.1| Bacterial Protein Translation Initiation Factor 3 (IF-3)
[Lactobacillus salivarius UCC118]
Length = 174
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +RL+ D G + V ++ EAL +A DLV V KA PPV KIMD+ K
Sbjct: 10 VNEGIRARELRLISDNGDQLGVKTKQEALKMAEDANLDLVLVAPKAKPPVAKIMDYG--K 67
Query: 141 YQKELKEKDR-AKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+ EL++K R A+ K + + KEVR S I+ D K ++ + KG +VK
Sbjct: 68 YRFELQKKQREARKKQKVV----NIKEVRLSPTIDTNDFNTKMKNARKFLSKGDKVKVSI 123
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L+R + ED++ VES ++ + + ++
Sbjct: 124 RFKGRAITHKDIGRDVLNRFAEATEDVATVESKAKMDGRSMFLML 168
>gi|226360108|ref|YP_002777886.1| translation initiation factor IF-3 [Rhodococcus opacus B4]
gi|226238593|dbj|BAH48941.1| translation initiation factor IF-3 [Rhodococcus opacus B4]
Length = 215
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G +V V +AL LA DLVEV A PPVCKIMD+ K
Sbjct: 6 RINDRIRVPEVRLVGPGGEQVGIVRVEDALRLALEADLDLVEVAPDARPPVCKIMDYGKF 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ ++ +T+ KE + KI+ D + K V R ++ G +VK
Sbjct: 66 KYEAAQKARE-SRKNQQLTV----IKEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
+ G+++ +LG L RL + D+ VE+
Sbjct: 121 MFRGREQSRPELGFRLLQRLGADVADLGFVET 152
>gi|159904304|ref|YP_001551648.1| translation initiation factor IF-3 [Prochlorococcus marinus str.
MIT 9211]
gi|226713805|sp|A9BD81.1|IF3_PROM4 RecName: Full=Translation initiation factor IF-3
gi|159889480|gb|ABX09694.1| Translation Initiation factor 3 [Prochlorococcus marinus str. MIT
9211]
Length = 202
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 89/158 (56%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+I +R+V +G + V++R AL +A+ + DLV V KANPPVC+IM++ K
Sbjct: 17 PNINDRIKYPQLRVVDADGTQLGVINREAALEVAQERELDLVLVSEKANPPVCRIMNYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D +++ + R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYEVRINQATRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + +L L+R+ +E+ + V+ P E
Sbjct: 132 VIFRGREIQHTNLAESLLARMAKDLEEQAEVQQTPKRE 169
>gi|312879875|ref|ZP_07739675.1| bacterial translation initiation factor 3 (bIF-3) [Aminomonas
paucivorans DSM 12260]
gi|310783166|gb|EFQ23564.1| bacterial translation initiation factor 3 (bIF-3) [Aminomonas
paucivorans DSM 12260]
Length = 229
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N +I A V L+ D+ K VV +AL LA + DLVEV A PPVC+IMD+ K
Sbjct: 23 PRVNREIRANEVLLIDDQNVKQGVVPTRQALQLAEERELDLVEVAPLAKPPVCRIMDYGK 82
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
++Q++ ++KD K + K KE++ KI+ D K V ++ G+RVK
Sbjct: 83 YRFQQQKRDKDARKKQ-----KNQSVKEMKMRPKIDVHDYTFKVKAVCAFLEDGHRVKVS 137
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ D G L R+ IE VE P +E
Sbjct: 138 VFFRGREMAFLDRGREVLDRVRRDIEGFGKVEMEPRME 175
>gi|307718473|ref|YP_003874005.1| translation initiation factor IF-3 [Spirochaeta thermophila DSM
6192]
gi|386347117|ref|YP_006045366.1| translation initiation factor IF-3 [Spirochaeta thermophila DSM
6578]
gi|306532198|gb|ADN01732.1| translation initiation factor IF-3 [Spirochaeta thermophila DSM
6192]
gi|339412084|gb|AEJ61649.1| Translation initiation factor IF-3 [Spirochaeta thermophila DSM
6578]
Length = 172
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N+ I A+ VRL+ + G + VV EAL AR DLVEV +A PPVCKI+D+ K
Sbjct: 7 RTNEAITAREVRLIDENGEQLGVVPTQEALRRAREKGLDLVEVAPQAKPPVCKILDYGKY 66
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K+++E K K+ K + LK+ VR KI+ DL+ K ++ +++G +VK
Sbjct: 67 KFEQEKKLKETKKKQKQNKLKE-----VRMQPKIDSHDLEFKTRHIREFLEEGNKVKVTI 121
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ ++G G L ++++L+ED VE P +E
Sbjct: 122 RFRGRELAHTEIGRGVLEKILELLEDGYTVEKTPSME 158
>gi|124267076|ref|YP_001021080.1| translation initiation factor 3 [Methylibium petroleiphilum PM1]
gi|124259851|gb|ABM94845.1| bacterial translation initiation factor 3 (bIF-3) [Methylibium
petroleiphilum PM1]
Length = 160
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 11/153 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+VS EAL LA DLVE+ A+PPVC++MD+ K KY ++ K + + I
Sbjct: 17 IVSIQEALRLAGEADVDLVEISATADPPVCRLMDYGKFKYAEQKKAAEAKAKQHVI---- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
D KEV+F ++ D +K ++R +++G + K G++ +D+G L R+ D
Sbjct: 73 -DIKEVKFRPGTDEGDYAIKMRNLRRFLEEGDKGKVTLRYRGREITHQDIGMRLLERIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ D+SVVE+ P +E +Q ++ GP +K
Sbjct: 132 ELADVSVVENMPKLEGRQMIMVL-----GPKRK 159
>gi|85858498|ref|YP_460700.1| translation initiation factor 3 [Syntrophus aciditrophicus SB]
gi|85721589|gb|ABC76532.1| translation initiation factor 3 (IF-3) [Syntrophus aciditrophicus
SB]
Length = 181
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 13/146 (8%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I A VR++ +G + V++ +ALA AR DLVEV + PPVC+IMD+ K
Sbjct: 18 KINNEIKAATVRVISYQGEQLGVLTLADALAEARKEGLDLVEVASTSTPPVCRIMDYGKF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+YQ+ K + K++S I + KE+R K+E+ DLQ+K +++ +++ +VK
Sbjct: 78 RYQQSKKLQVARKSQSTIQV-----KEIRLRPKVEEHDLQVKIKHIRKFLEQHDKVKVSV 132
Query: 200 LPVGKKEETEDLGGYLSRLIDLIEDI 225
L G++ D+G L+EDI
Sbjct: 133 LFRGREIAFTDIGR------KLLEDI 152
>gi|424858268|ref|ZP_18282300.1| LOW QUALITY PROTEIN: translation initiation factor IF-3, partial
[Rhodococcus opacus PD630]
gi|356661955|gb|EHI42254.1| LOW QUALITY PROTEIN: translation initiation factor IF-3, partial
[Rhodococcus opacus PD630]
Length = 196
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G +V V +AL LA DLVEV A PPVCKIMD+ K
Sbjct: 39 RINDRIRVPEVRLVGPGGEQVGIVRVEDALRLALEADLDLVEVAPDARPPVCKIMDYGKF 98
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ ++ +T+ KE + KI+ D + K V R ++ G +VK
Sbjct: 99 KYEAAQKARE-SRKNQQLTV----IKEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 153
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
+ G+++ +LG L RL + D+ VE+
Sbjct: 154 MFRGREQSRPELGFRLLQRLGADVADLGFVET 185
>gi|154482660|ref|ZP_02025108.1| hypothetical protein EUBVEN_00333 [Eubacterium ventriosum ATCC
27560]
gi|149736436|gb|EDM52322.1| translation initiation factor IF-3 [Eubacterium ventriosum ATCC
27560]
Length = 164
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR++ +G + V+S +A LA + DL+++ KA PPVCKIMD+ K +
Sbjct: 2 INEQIRDREVRVIGTDGQQLGVMSSRDAQKLADEAELDLIKISPKAKPPVCKIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ +EK+ AK K I + KE+R S +E DL+ KA+ ++ ++KG +VK
Sbjct: 62 YEQQKREKE-AKKKQHIV----EVKEIRLSPNVEINDLKTKANNARKFIEKGDKVKVTLR 116
Query: 201 PVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
G++ L ++EDI+ V P +E
Sbjct: 117 FRGREMAHISSNAHVLDDFAKMLEDIASVVKAPKLE 152
>gi|15597939|ref|NP_251433.1| translation initiation factor IF-3 [Pseudomonas aeruginosa PAO1]
gi|254241196|ref|ZP_04934518.1| translation initiation factor IF-3 [Pseudomonas aeruginosa 2192]
gi|420139506|ref|ZP_14647337.1| translation initiation factor IF-3 [Pseudomonas aeruginosa CIG1]
gi|421153826|ref|ZP_15613363.1| translation initiation factor IF-3 [Pseudomonas aeruginosa ATCC
14886]
gi|421160057|ref|ZP_15619154.1| translation initiation factor IF-3 [Pseudomonas aeruginosa ATCC
25324]
gi|421167185|ref|ZP_15625389.1| translation initiation factor IF-3 [Pseudomonas aeruginosa ATCC
700888]
gi|421174071|ref|ZP_15631804.1| translation initiation factor IF-3 [Pseudomonas aeruginosa CI27]
gi|421180104|ref|ZP_15637671.1| translation initiation factor IF-3 [Pseudomonas aeruginosa E2]
gi|14194831|sp|Q9I0A0.1|IF3_PSEAE RecName: Full=Translation initiation factor IF-3
gi|9948821|gb|AAG06131.1|AE004702_8 translation initiation factor IF-3 [Pseudomonas aeruginosa PAO1]
gi|126194574|gb|EAZ58637.1| translation initiation factor IF-3 [Pseudomonas aeruginosa 2192]
gi|403247703|gb|EJY61328.1| translation initiation factor IF-3 [Pseudomonas aeruginosa CIG1]
gi|404523255|gb|EKA33695.1| translation initiation factor IF-3 [Pseudomonas aeruginosa ATCC
14886]
gi|404534778|gb|EKA44501.1| translation initiation factor IF-3 [Pseudomonas aeruginosa CI27]
gi|404535543|gb|EKA45233.1| translation initiation factor IF-3 [Pseudomonas aeruginosa ATCC
700888]
gi|404545530|gb|EKA54611.1| translation initiation factor IF-3 [Pseudomonas aeruginosa ATCC
25324]
gi|404545784|gb|EKA54853.1| translation initiation factor IF-3 [Pseudomonas aeruginosa E2]
Length = 183
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 97/181 (53%), Gaps = 10/181 (5%)
Query: 67 VQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDR 124
++ + ++D++ P +N+ I+A+ VRL+ +G +V VS EA+ LA + DLVE+
Sbjct: 3 IKREMRQDKRAQPKPPINENISAREVRLIGADGQQVGVVSIDEAIRLAEEAKLDLVEISA 62
Query: 125 KANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADT 184
A PPVC+IMD Y K L EK + A + K+ KE++F E+ D Q+K
Sbjct: 63 DAVPPVCRIMD-----YGKHLFEKKKQAAVAKKNQKQAQVKEIKFRPGTEEGDYQVKLRN 117
Query: 185 VKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAI 242
+ R + +G + K G++ ++LG L + + DL+E VE P +E +Q +
Sbjct: 118 LVRFLSEGDKAKVSLRFRGREMAHQELGMELLKRVEADLVE-YGTVEQHPKLEGRQLMMV 176
Query: 243 I 243
I
Sbjct: 177 I 177
>gi|29840528|ref|NP_829634.1| translation initiation factor IF-3 [Chlamydophila caviae GPIC]
gi|33301219|sp|Q822B2.1|IF3_CHLCV RecName: Full=Translation initiation factor IF-3
gi|29834877|gb|AAP05512.1| translation initiation factor IF-3 [Chlamydophila caviae GPIC]
Length = 186
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 83 LNDKINAQF----VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
LN KIN Q VRL+ G + +++ +AL LAR DLVEV + PPVCKIMD+
Sbjct: 3 LNLKINRQIRAPKVRLIGSSGEQLGILNTKDALDLAREADLDLVEVASNSEPPVCKIMDY 62
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y KEKD KA+ + + KEV+ I++ D K + ++KG +VK
Sbjct: 63 GKYRYDLTKKEKDSKKAQHQVRI-----KEVKLKPNIDEGDFSTKLKQARAFIEKGNKVK 117
Query: 197 CMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + ++ +EDI +ES P + + ++
Sbjct: 118 ITCMFRGRELAYPEHGHRVVQKMSQGLEDIGFMESEPKLNGRSLICVM 165
>gi|393758142|ref|ZP_10346966.1| translation initiation factor IF-3 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393165834|gb|EJC65883.1| translation initiation factor IF-3 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 138
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 11/147 (7%)
Query: 109 LALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVR 168
+A+A DLVE+ A PPVC++MD+ K +YQ E K + AKAK I KEV+
Sbjct: 1 MAMAEQHDVDLVEIAPAAVPPVCRLMDYGKFRYQ-EQKRQQEAKAKQKII----QIKEVK 55
Query: 169 FSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISV 227
F ++ D Q+K VKR +D G +VK G++ ++LG L R+ D + +I
Sbjct: 56 FRPGTDEGDYQVKLRNVKRFIDDGDKVKVTLRFRGREMAHQELGMRVLERIRDEVSEICQ 115
Query: 228 VESGPHVERKQAYAIIRHVKFGPSKKG 254
VE+ P +E +Q ++ P KK
Sbjct: 116 VEAMPKLEGRQMVMVL-----APRKKA 137
>gi|379009356|ref|YP_005267169.1| protein chain initiation factor IF-3 [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
gi|375157880|gb|AFA40946.1| protein chain initiation factor IF-3 [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 187
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+A+ VR++ + K V++ +EAL +A+ DLVE+ ANPPVC+IM++ K
Sbjct: 19 RINEEIHAKLVRIIGNNSAKLGVLTLYEALNVAKESGMDLVEISPNANPPVCRIMNYGKF 78
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+K K++ K + I + KE++F + D Q+K + ++ G +VK
Sbjct: 79 LYEKNKSHKEQKKKQKTI-----NIKEIKFRPNTDIGDYQVKLRKLTSFLNNGDKVKITL 133
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP-HVERKQAYAII 243
G++ +++G L+R+ +++++++ES P +E +Q I+
Sbjct: 134 RFRGREIIHQEIGINMLNRICQDLKELAIIESFPKKIEGRQMVLIL 179
>gi|406706840|ref|YP_006757193.1| translation initiation factor 3 (bIF-3) [alpha proteobacterium
HIMB5]
gi|406652616|gb|AFS48016.1| bacterial translation initiation factor 3 (bIF-3) [alpha
proteobacterium HIMB5]
Length = 181
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GP+ N+KI + V+++ +G V++ EA+++A++ DL+E+ NPPVCKIMD
Sbjct: 17 GPKFNNKITSPDVQVIDSDGENLGVLNTFEAISIAKNKGLDLIEIAPNVNPPVCKIMDMG 76
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY + K+ + AK K I KE++ E D + K K+ + KG +VK
Sbjct: 77 KFKYDAQ-KKANLAKKKQKII----SLKEIKMRPVTETHDYEFKVKNAKKFIAKGDKVKF 131
Query: 198 MALPVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAIIR 244
G++ + LG L +++ + ++DI VE P + KQ +I+
Sbjct: 132 TIRFKGRELQHSHLGNELMNKIKEDMKDIGKVELNPKFDGKQMIMVIQ 179
>gi|116747873|ref|YP_844560.1| translation initiation factor IF-3 [Syntrophobacter fumaroxidans
MPOB]
gi|116696937|gb|ABK16125.1| translation initiation factor IF-3 [Syntrophobacter fumaroxidans
MPOB]
Length = 171
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR++ +G + V+S +AL LA + DLVEV A+PPVCKIMD+ K K
Sbjct: 9 VNERIRSSEVRVIGQDGQQLGVLSLKKALELAAQDELDLVEVAPNADPPVCKIMDYGKFK 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ + ++ K ++ I + KEV+ K ++ DL +K +KR + + + K L
Sbjct: 69 YQQNKRTQEAKKKQTVIQV-----KEVKIRPKTDEHDLLVKIRHIKRFLAQKDKAKVTIL 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ D G L R+ + +++ +V+E P +E + I+
Sbjct: 124 FRGREIAYTDQGTKVLERVREELKEDAVIEQPPKMEGRNMVMIL 167
>gi|390562014|ref|ZP_10244275.1| Translation initiation factor IF-3 (fragment) [Nitrolancetus
hollandicus Lb]
gi|390173416|emb|CCF83576.1| Translation initiation factor IF-3 (fragment) [Nitrolancetus
hollandicus Lb]
Length = 149
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 111 LARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD-RAKAKSDITLKKGDCKEVRF 169
+AR DLVEV A+PPVC++MD+ K +Y++ KE++ R + KS I KEVR
Sbjct: 1 MARERGLDLVEVQPNASPPVCRLMDYGKFRYEESRKERESRKRQKSAI------VKEVRL 54
Query: 170 SGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVV 228
KI++ DL+ K +R ++ G +VK L G++ +D+G L +L + ++V+
Sbjct: 55 RPKIDEHDLETKGRQAQRFLEAGDKVKLSVLFRGREIAHQDIGRELLVKLSQQLTQVAVI 114
Query: 229 ESGPHVE 235
+ PH+E
Sbjct: 115 DQPPHME 121
>gi|312622558|ref|YP_004024171.1| translation initiation factor if-3 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203025|gb|ADQ46352.1| translation initiation factor IF-3 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 166
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR++ + G + ++S EAL +A + DLV++ ANPPVCKIMD+ K K
Sbjct: 3 INEQIRDKEVRVIDENGVQLGIMSIKEALRIAEEKKLDLVKIAPHANPPVCKIMDYGKYK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ KEK+ K + I + KE+R + IE+ D +K R + G +VK
Sbjct: 63 FELAKKEKEAKKNQKVINV-----KEIRLTTTIEEHDFNVKVKNAIRFLQDGDKVKVSIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G ++R I+ I+D VVE P ++ K A+I
Sbjct: 118 FRGREVLHPEIGEEIINRFIEKIKDYGVVEKKPKLDGKNLTAVI 161
>gi|334120872|ref|ZP_08494949.1| Translation initiation factor IF-3 [Microcoleus vaginatus FGP-2]
gi|428317388|ref|YP_007115270.1| bacterial translation initiation factor 3 (bIF-3) [Oscillatoria
nigro-viridis PCC 7112]
gi|333455871|gb|EGK84511.1| Translation initiation factor IF-3 [Microcoleus vaginatus FGP-2]
gi|428241068|gb|AFZ06854.1| bacterial translation initiation factor 3 (bIF-3) [Oscillatoria
nigro-viridis PCC 7112]
Length = 178
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N+ I +R++ +G + +++ EAL LA + DLV V KA+PPVC++MD+ K
Sbjct: 13 PQINENIRYPKIRVIDTDGAQLGILTPAEALRLAEEKELDLVLVSDKADPPVCRVMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ + + D KEV+ KIE+ D Q++ R + G +VK
Sbjct: 73 YKFEQEKKAREAKRKQ-----HTADVKEVKMRYKIEEHDYQVRLKLADRFIKSGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + +L L R+ +++I+ V+ P E
Sbjct: 128 IMFRGREIQHSNLAEDLLKRMATDLQEIAEVQQAPKKE 165
>gi|400291876|ref|ZP_10793862.1| translation initiation factor IF-3 [Actinomyces naeslundii str.
Howell 279]
gi|399903013|gb|EJN85782.1| translation initiation factor IF-3 [Actinomyces naeslundii str.
Howell 279]
Length = 199
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRVEDALRLAEEADLDLVEVAPDARPPVCKLMDYGKFKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI++ D K V+R + G +VKC+ G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDEHDYATKRGHVERFLKGGDKVKCIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L L + + ++ +ES P
Sbjct: 116 ELGIRLLQGLAEEMAELGTIESHP 139
>gi|269792335|ref|YP_003317239.1| translation initiation factor IF-3 [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269099970|gb|ACZ18957.1| translation initiation factor IF-3 [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 194
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 97/196 (49%), Gaps = 11/196 (5%)
Query: 86 KINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQK 143
+I A V L+ D+ KV V EAL +A + DLVEV A PPVCKIMD+ K ++Q+
Sbjct: 2 EIRAAEVLLIDDQNVKVGVVPIQEALRMAEERELDLVEVAPLAKPPVCKIMDYGKYRFQQ 61
Query: 144 ELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPV 202
+ ++KD R K KS KE++ KI+ D K V+ ++ G+RVK
Sbjct: 62 QKRDKDARKKQKSQA------LKEIKMRPKIDVHDYTFKVKAVRSFLEDGHRVKVSVFFR 115
Query: 203 GKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK-KGGLKKLK 260
G++ D G L R+ +ED+ VE P +E +I + SK +GG K +
Sbjct: 116 GREMAFLDRGREVLDRVRKDVEDLGKVEMEPRMEGSYMRMMIAPLLQQASKDQGGSKSAR 175
Query: 261 AVGDTSGVSKAATPSS 276
V S S + P S
Sbjct: 176 PVSKDSRNSNSLDPGS 191
>gi|343522930|ref|ZP_08759896.1| translation initiation factor IF-3 [Actinomyces sp. oral taxon 175
str. F0384]
gi|343402339|gb|EGV14845.1| translation initiation factor IF-3 [Actinomyces sp. oral taxon 175
str. F0384]
Length = 199
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRVEDALRLAEEADLDLVEVAPDARPPVCKLMDYGKFKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI++ D K V+R + G +VKC+ G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDEHDYATKRGHVERFLKGGDKVKCIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L L + + ++ +ES P
Sbjct: 116 ELGIRLLQGLAEEMAELGTIESHP 139
>gi|88809920|ref|ZP_01125425.1| translation initiation factor IF-3 [Synechococcus sp. WH 7805]
gi|88786110|gb|EAR17272.1| translation initiation factor IF-3 [Synechococcus sp. WH 7805]
Length = 220
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+ R +AL +A+ + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDADGTQLGVIDREKALEVAQERELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ +R + G +VKC
Sbjct: 77 YKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLGGYLSR 217
+ G++ + L L R
Sbjct: 132 VIFRGREIQHTALAETLLR 150
>gi|330752454|emb|CBL87404.1| translation initiation factor IF-3 [uncultured Flavobacteriia
bacterium]
Length = 173
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 82 RLNDKINAQFVRLVLDEGH-KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N KI A+ +RLV D V +ALA+A DLVE+ KA PPVCK+MD+ K
Sbjct: 10 RINRKITAEELRLVGDNVEIGVYKLSQALAIANDQNLDLVEISPKAVPPVCKVMDYKKFL 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ +EK + + + KE+RF + D K ++ +++G ++K
Sbjct: 70 YEQKKREKALKSKAAKVVV-----KEIRFGPNTDDHDYNFKKKHAEKFLNEGAKLKAFVF 124
Query: 201 PVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G+ KE+ + L L RL +E + VE P +E K+ I +K
Sbjct: 125 FKGRSIIFKEQGQIL---LLRLAQDLEKLGKVEQMPKLEGKRMIMFIAPIK 172
>gi|255994770|ref|ZP_05427905.1| translation initiation factor IF-3 [Eubacterium saphenum ATCC
49989]
gi|255993483|gb|EEU03572.1| translation initiation factor IF-3 [Eubacterium saphenum ATCC
49989]
Length = 177
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A VR++ + G + ++ R EAL +A DLV V A PPVCKI+D+ K K
Sbjct: 14 INEEIKATEVRVIDENGEQLGIMQREEALDIAEEKGLDLVNVSPNAKPPVCKILDYGKFK 73
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y ++ +EK+ K + I + KE+R S IE+ D+ +KA + ++ G +VK
Sbjct: 74 YDQQKREKEARKKQKTIQV-----KEIRLSAAIEEHDIDVKAKRACKFLEAGDKVKVTLR 128
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ +++ L + E+ +E P ++
Sbjct: 129 FRGRERSHKEVAYAVLEKFAKKAEEFGEIEKKPTMD 164
>gi|399924168|ref|ZP_10781526.1| translation initiation factor IF-3 [Peptoniphilus rhinitidis 1-13]
Length = 188
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E ++N++I + VRLV DEG++ VV+ ++A+ LA S + DLV+V A PPVC++M
Sbjct: 13 EIKELQINEEIREREVRLVDDEGNQLGVVATNQAIDLAISKRLDLVKVAPNAKPPVCRLM 72
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K +Y E KEK+ K + I + KE+R + IE DL KA+ + G R
Sbjct: 73 DYGKYRYDMEKKEKEARKKQKVINI-----KELRLTPNIEDHDLNTKANRAIDFLKNGDR 127
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VK G++ DLG L + +DLI + VV+ P +E
Sbjct: 128 VKVAVRFRGREMGHTDLGREVLDKFVDLISEYGVVDKKPKME 169
>gi|220903767|ref|YP_002479079.1| translation initiation factor IF-3 [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868066|gb|ACL48401.1| translation initiation factor IF-3 [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 176
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 89/157 (56%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N+ I A+ VR++ +G + ++ R+EA+ +A+ DLVEV + PPVC+IMD+ K
Sbjct: 13 RRNEMIRAREVRVIAADGEQLGILQRNEAIVMAKEAGMDLVEVSSNSEPPVCRIMDYGKF 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+++ K+++ K ++ + + KE++ K + D + K ++R +++G R K
Sbjct: 73 KYEQQKKKQEAKKRQAVVQI-----KEIKVRPKTDDHDYETKVRHIRRFLEEGDRCKITV 127
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ +D G L R++ + DI+ V+ P E
Sbjct: 128 FFRGREIVHKDRGIAILERVVQDLADIARVDQEPRAE 164
>gi|408500824|ref|YP_006864743.1| translation initiation factor IF-3 [Bifidobacterium asteroides
PRL2011]
gi|408465648|gb|AFU71177.1| translation initiation factor IF-3 [Bifidobacterium asteroides
PRL2011]
Length = 210
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 10/148 (6%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRL+ G +V ++ AL LA+ DLVEV KA PPV K++D+ K KY +++K ++
Sbjct: 4 VRLIGPNGEQVGIIATSVALNLAKEANLDLVEVAPKAKPPVAKLIDYGKFKYNEKIKARE 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +S + KE+RF KI+ D ++K V+R + G +VK + G +E++
Sbjct: 64 ARRNQS-----MSEIKEIRFRLKIDDHDFEVKEGHVRRFLSAGDKVKVTIMLRG-REQSR 117
Query: 210 DLGG--YLSRLIDLIEDISVVESGPHVE 235
+GG L +L D + D+ +E P E
Sbjct: 118 PIGGVELLRKLADDVADLGSIEFAPKQE 145
>gi|329939051|ref|ZP_08288425.1| translation initiation factor IF-3 [Streptomyces griseoaurantiacus
M045]
gi|329301936|gb|EGG45829.1| translation initiation factor IF-3 [Streptomyces griseoaurantiacus
M045]
Length = 209
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAATARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 155
>gi|373459869|ref|ZP_09551636.1| Translation initiation factor IF-3 [Caldithrix abyssi DSM 13497]
gi|371721533|gb|EHO43304.1| Translation initiation factor IF-3 [Caldithrix abyssi DSM 13497]
Length = 168
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 14/164 (8%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N+ I A+ VRL+ DEG +V VS +ALALA+ DLVE+ ANPPVCKI+D
Sbjct: 2 TQKNRINEAITAREVRLIDDEGKQVGIVSLDKALALAQEKGLDLVEIAPNANPPVCKILD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K Y++ KEK K + + + KE+R K E DL+ K + + +V
Sbjct: 62 YGKYVYEQSKKEKLSKKKQHTVVV-----KEIRMRPKTEDHDLKYKLKHAREFLMNKNKV 116
Query: 196 KCMALPVGKKEETEDLGGYLSRLIDLIE----DISVVESGPHVE 235
K G++ ++ G RL++ IE DI+ VE E
Sbjct: 117 KFTVHFRGRELAHKEFG---ERLLEKIENELSDIAKVEGKKQFE 157
>gi|187918064|ref|YP_001883627.1| translation initiation factor IF-3 [Borrelia hermsii DAH]
gi|238689282|sp|B2RZQ1.1|IF3_BORHD RecName: Full=Translation initiation factor IF-3
gi|119860912|gb|AAX16707.1| bacterial protein translation initiation factor 3 (IF-3) [Borrelia
hermsii DAH]
Length = 186
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N KI A+ VR++ D+G V+ +A+ AR + DLVEV PPVCKI+D+ K K
Sbjct: 21 RINHKIKAREVRVIFDDGTQSVLPIEDAMRCARDAELDLVEVSPNVLPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ + ++K++ K + I L KEVR KI+ DL K + + +G +VK
Sbjct: 81 FHQGKRQKEQRKNQKIIKL-----KEVRMQPKIDTHDLDFKYRNILGFLKEGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L +++ I D + ++ES +E K + +I
Sbjct: 136 FRGRELAHTHLGYGILEGILERIGDANYILESPAKMEGKTMFLVI 180
>gi|299535483|ref|ZP_07048805.1| translation initiation factor IF-3 [Lysinibacillus fusiformis ZC1]
gi|424737520|ref|ZP_18165971.1| translation initiation factor IF-3 [Lysinibacillus fusiformis ZB2]
gi|298729244|gb|EFI69797.1| translation initiation factor IF-3 [Lysinibacillus fusiformis ZC1]
gi|422948375|gb|EKU42754.1| translation initiation factor IF-3 [Lysinibacillus fusiformis ZB2]
Length = 167
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +RL+ G + V +R+EAL +A + DLV V +A PPV +IMD+ K K
Sbjct: 3 VNEGIRARELRLIDHNGDQLGVKTRNEALEIATRVNLDLVLVAPQAKPPVARIMDYGKFK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + I + KEVR S I++ D Q K + ++KG +VKC
Sbjct: 63 FEQQKKDREIRKNQKVIVM-----KEVRLSPTIDEHDFQTKLRNAIKFLEKGDKVKCSLR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
G+ +++G L R + ++S VE P +E + + +++
Sbjct: 118 FKGRAITHKEIGQRVLDRFAEACAEVSTVEQKPKMEGRSMFLVLQ 162
>gi|357388468|ref|YP_004903307.1| putative translation initiation factor IF-3 [Kitasatospora setae
KM-6054]
gi|311894943|dbj|BAJ27351.1| putative translation initiation factor IF-3 [Kitasatospora setae
KM-6054]
Length = 229
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAATARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL D ++++ VES P + + ++ GP KK
Sbjct: 116 ELGFRLLQRLADDVQELGFVESAPKQDGRNMIMVL-----GPHKK 155
>gi|347818910|ref|ZP_08872344.1| translation initiation factor IF-3 [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 161
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 103 VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKG 162
+S EAL +A L DLVE+ A PPVC++MD+ K KYQ E K AKAK +
Sbjct: 1 MSLTEALRMAGELDVDLVEIAATAKPPVCRLMDYGKFKYQ-EQKRAAEAKAKQTVI---- 55
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDL 221
+ KEV+F + D +K ++R + G + K G++ ++LG L+R+ D
Sbjct: 56 EIKEVKFRPGTDDGDYNIKMRNIRRFLADGDKCKITLRFRGREITHQELGLALLNRIRDD 115
Query: 222 IEDISVVESGPHVERKQAYAII 243
+ D ++E P +E +Q +I
Sbjct: 116 LADSIIIEQFPKLEGRQMIMMI 137
>gi|116074375|ref|ZP_01471637.1| translation initiation factor IF-3 [Synechococcus sp. RS9916]
gi|116069680|gb|EAU75432.1| translation initiation factor IF-3 [Synechococcus sp. RS9916]
Length = 218
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 15/195 (7%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+ R +AL++A+ + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDADGTQLGVIDREQALSVAQERELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ +R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLK 257
+ G++ + L L R+ +E+ + ++ P E + + P K +K
Sbjct: 132 VIFRGREIQHTALAEVLLRRMAKDLEEQAEIQQAPKREGRNMIMFL-----TPRKTPLVK 186
Query: 258 KLKAVGDTSGVSKAA 272
K KA D V KA
Sbjct: 187 KDKA--DDQPVVKAV 199
>gi|387906955|ref|YP_006337290.1| translation initiation factor IF-3 [Blattabacterium sp. (Blaberus
giganteus)]
gi|387581847|gb|AFJ90625.1| translation initiation factor IF-3 [Blattabacterium sp. (Blaberus
giganteus)]
Length = 191
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 71 QKKDEKETSGPRLNDKINAQFVRLV----LDEGHKVVSRHEALALARSLQCDLVEVDRKA 126
QKK+E R+ND I+ VRLV ++ G + S EA+ +R + DLVE++ K
Sbjct: 21 QKKEEH-----RINDSIDTPKVRLVGASFIENG--IYSIQEAIQFSRERELDLVEINPKL 73
Query: 127 NPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVK 186
NPPVCKI+D Y+K L E+ + K + K + KE+RF +I D ++K + +
Sbjct: 74 NPPVCKILD-----YKKFLYEQKKRKKQFKAKQIKVNTKEIRFGPQIGDHDGKVKIKSAE 128
Query: 187 RLMDKGYRVKCMALPVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAIIRH 245
+ + +G +VK G+ +D G L + + IE+ VE P +E K+ Y I+
Sbjct: 129 KFLMRGDKVKVFVFFKGRSIVYKDQGKIKLLKFAEEIEEYGKVEQMPIMEGKRMYMILAP 188
Query: 246 VKF 248
KF
Sbjct: 189 KKF 191
>gi|334134437|ref|ZP_08507947.1| translation initiation factor IF-3 [Paenibacillus sp. HGF7]
gi|333608245|gb|EGL19549.1| translation initiation factor IF-3 [Paenibacillus sp. HGF7]
Length = 176
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I A+ VRL+ E ++ + EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 12 VNDEIRAKEVRLIGPESEQLGIKPIREALQMAIDANLDLVNVAPTAKPPVCRIMDYGKYR 71
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ + KEK+ K + + D KE+R S I++ D Q K + ++ G +VK
Sbjct: 72 YEMQKKEKEARKNQKIV-----DIKEIRLSATIDEHDFQTKLRNAVKFLNDGDKVKASVR 126
Query: 201 PVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ E+ L RL E+IS +E P +E + I+
Sbjct: 127 FRGREIAHAENGRKVLQRLATETEEISSMERAPKLEGRSMIMIL 170
>gi|118593811|ref|ZP_01551177.1| translation initiation factor IF-3 [Stappia aggregata IAM 12614]
gi|118433606|gb|EAV40271.1| translation initiation factor IF-3 [Stappia aggregata IAM 12614]
Length = 152
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VV EA+ +A DLVE+ ANPPVCKI+D+ + KYQ + K + K + + +
Sbjct: 11 VVPTEEAMGIAMDAGLDLVEIQPNANPPVCKILDYGRYKYQAQKKAAETRKKQKTVEI-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE++ I+ D ++K ++ R +G +VK G++ +DLG L+++ +
Sbjct: 69 ---KEIKMRPNIDTHDYEVKMKSMLRFFGEGDKVKVTLRFRGREMAHQDLGMNLLNKVRE 125
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVK 247
+I+ VES P +E +Q ++ +K
Sbjct: 126 ETNEIAKVESAPKLEGRQMVMVLAPIK 152
>gi|427706427|ref|YP_007048804.1| translation initiation factor 3 (bIF-3) [Nostoc sp. PCC 7107]
gi|427358932|gb|AFY41654.1| bacterial translation initiation factor 3 (bIF-3) [Nostoc sp. PCC
7107]
Length = 177
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGSQLGIITPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQH-----TADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ +E V+ P E + +I
Sbjct: 128 VMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLI 173
>gi|397904499|ref|ZP_10505409.1| Translation initiation factor 3 [Caloramator australicus RC3]
gi|397162454|emb|CCJ32743.1| Translation initiation factor 3 [Caloramator australicus RC3]
Length = 173
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + +RL+ +G + ++ +AL +A S Q DLV + +A PPVCKIMD+ K
Sbjct: 10 VNEEIREKEIRLIDSDGTQLGIMPTKKALEIAESKQLDLVLIAPQAKPPVCKIMDYGKFI 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + I + KE+R + I++ DL +KA ++ + G +VK
Sbjct: 70 YEQQKKEKEAKKKQKVINV-----KEIRITPNIDEHDLNVKAKNAEKFLKDGDKVKVTVK 124
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ E LG L R D + ++ V+E P +E K + ++
Sbjct: 125 FRGREAEHSHLGEEVLKRFADKLSEVGVIEKQPKLEGKNMFMVL 168
>gi|385143505|emb|CCH24544.1| translation initiation factor IF3 [Corynebacterium glutamicum K051]
Length = 189
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +A LA DLVEV A PPVCKIMD+ K
Sbjct: 22 RINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPNAKPPVCKIMDYGKF 81
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K + V R ++KG +VK
Sbjct: 82 KYEAAQKARESRKNQQQTVV-----KEQKLRPKIDDHDYETKKNNVIRFLEKGSKVKVTI 136
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ G+++ +LG L RL + + D +VE+ + + ++ GP +KG
Sbjct: 137 MFRGREQARPELGYRLLERLANDVVDFGIVETRAKQDERNMTMVL-----GPVRKG 187
>gi|320449907|ref|YP_004202003.1| translation initiation factor IF-3 [Thermus scotoductus SA-01]
gi|320150076|gb|ADW21454.1| translation initiation factor IF-3 [Thermus scotoductus SA-01]
Length = 157
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 86/147 (58%), Gaps = 10/147 (6%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+R++ +G + ++ EAL LA+ DLV V A+PPV +IMD+ K +Y++++ EK+
Sbjct: 1 MRVIGADGQQLGIMDTREALRLAQEQDLDLVLVGPTADPPVARIMDYSKWRYEQQVAEKE 60
Query: 150 -RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEET 208
R KA K+ + K ++F KI+ D Q K + +KR + +G++VK + G++
Sbjct: 61 ARKKA------KRTEVKSIKFRVKIDDHDYQTKLNHIKRFLAEGHKVKVTIMFRGREMSH 114
Query: 209 EDLGG-YLSRLIDLIEDISVVESGPHV 234
+LG L R+ + ++ ++VVE P +
Sbjct: 115 PELGERLLERVAEDLKGLAVVEMKPEL 141
>gi|390168804|ref|ZP_10220757.1| translation initiation factor IF-3 [Sphingobium indicum B90A]
gi|389588592|gb|EIM66634.1| translation initiation factor IF-3 [Sphingobium indicum B90A]
Length = 172
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR N+ IN VR++ DEG V+ EA+ A + DLVEV A+PPVCK +D
Sbjct: 7 SGPRYNEFINVPKVRVIDDEGENLGVMYTQEAIERAYEIGLDLVEVSPNADPPVCKFLDI 66
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ + K K T + + KE++ I+ D K V + +G +VK
Sbjct: 67 GKYKYEAQKKANLARK-----TQRTQEIKEIKMRPNIDDHDYDTKMKKVHDFIGEGDKVK 121
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L R+ + + +I+ VE+ P +E +Q ++
Sbjct: 122 ITLRFRGRELSHQQLGMQLLQRVAENVGEIAKVEAYPRMEGRQMLMVL 169
>gi|365841931|ref|ZP_09382976.1| translation initiation factor IF-3 [Flavonifractor plautii ATCC
29863]
gi|364576641|gb|EHM53955.1| translation initiation factor IF-3 [Flavonifractor plautii ATCC
29863]
Length = 202
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 8/159 (5%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
G ++N++I + VRLV D G + ++S EAL A DLV++ ANPPVCK+MD+
Sbjct: 30 GHQINEEIRDKEVRLVSDTGEQLGIMSAREALERAMDANLDLVKISPTANPPVCKLMDYG 89
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K K+++ +EK+ K + + + KEVR S I+ D +K ++ + +G RVK
Sbjct: 90 KYKFEQTKREKEARKNQHVVEI-----KEVRMSPSIDVNDFNVKLRNAQKFLAEGNRVKV 144
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ D+G G L + + +++ ++ P ++
Sbjct: 145 TVRFRGREMAHTDIGKGLLLKFAEQCGEVATLDKDPKLD 183
>gi|229492674|ref|ZP_04386475.1| translation initiation factor IF-3 [Rhodococcus erythropolis SK121]
gi|453073458|ref|ZP_21976397.1| translation initiation factor IF-3 [Rhodococcus qingshengii BKS
20-40]
gi|229320333|gb|EEN86153.1| translation initiation factor IF-3 [Rhodococcus erythropolis SK121]
gi|452755895|gb|EME14314.1| translation initiation factor IF-3 [Rhodococcus qingshengii BKS
20-40]
Length = 230
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G +V V +AL LA DLVEV A PPVCKIMD+ K
Sbjct: 17 RINDRIRVPEVRLVGPGGEQVGIVRVEDALRLALEADLDLVEVAPDARPPVCKIMDYGKF 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ ++ +T+ KE + KI+ D + K V R ++ G +VK
Sbjct: 77 KYEAAQKARE-SRKNQQLTV----IKEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 131
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
+ G+++ +LG L RL + D+ VE+
Sbjct: 132 MFRGREQSRPELGYRLLQRLGADVADLGFVET 163
>gi|291440678|ref|ZP_06580068.1| translation initiation factor IF-3 [Streptomyces ghanaensis ATCC
14672]
gi|291343573|gb|EFE70529.1| translation initiation factor IF-3 [Streptomyces ghanaensis ATCC
14672]
Length = 199
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 155
>gi|256372443|ref|YP_003110267.1| translation initiation factor IF-3 [Acidimicrobium ferrooxidans DSM
10331]
gi|256009027|gb|ACU54594.1| translation initiation factor IF-3 [Acidimicrobium ferrooxidans DSM
10331]
Length = 170
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 94/166 (56%), Gaps = 12/166 (7%)
Query: 83 LNDKINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I + VRLV +G+++ + EAL +AR++ DLVEV A PPV KIMD+ K K
Sbjct: 1 MNDQIRVREVRLVGPDGNQLGIKPTPEALQIARAMDMDLVEVAPMAKPPVAKIMDYGKFK 60
Query: 141 YQ--KELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+ + ++E+ R + S + KE+++ KI Q D K V + + +G++VK
Sbjct: 61 FDQAQRVREQKRKASASQL-------KEMKYRPKISQGDFDTKTRQVAKFLAEGHKVKVT 113
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L+R+++ ++ ++ VE P ++ + ++
Sbjct: 114 IMFRGREVFHPELGQEILTRVVEAVKGVAHVEVMPKLDGRNMVMVL 159
>gi|154509025|ref|ZP_02044667.1| hypothetical protein ACTODO_01542 [Actinomyces odontolyticus ATCC
17982]
gi|293192345|ref|ZP_06609456.1| translation initiation factor IF-3 [Actinomyces odontolyticus
F0309]
gi|396583585|ref|ZP_10484113.1| translation initiation factor IF-3 [Actinomyces sp. ICM47]
gi|399524057|ref|ZP_10764640.1| translation initiation factor IF-3 [Atopobium sp. ICM58]
gi|399526381|ref|ZP_10766160.1| translation initiation factor IF-3 [Actinomyces sp. ICM39]
gi|153798659|gb|EDN81079.1| translation initiation factor IF-3 [Actinomyces odontolyticus ATCC
17982]
gi|292820260|gb|EFF79254.1| translation initiation factor IF-3 [Actinomyces odontolyticus
F0309]
gi|395548931|gb|EJG16102.1| translation initiation factor IF-3 [Actinomyces sp. ICM47]
gi|398362999|gb|EJN46649.1| translation initiation factor IF-3 [Actinomyces sp. ICM39]
gi|398374832|gb|EJN52359.1| translation initiation factor IF-3 [Atopobium sp. ICM58]
Length = 195
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VV +AL LA DLVEV A PPV K+MD+ K KY+ K +D + +++ L
Sbjct: 10 VVRVEDALRLAEEAGLDLVEVAPNAKPPVAKLMDYGKYKYEAAQKARDARRNQANTQL-- 67
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE+RF KI+ D +K V+R + G +VK M + G+++ + G L RL +
Sbjct: 68 ---KEIRFRLKIDDHDFGVKKGHVERFLSAGDKVKVMIMFRGREQSRPEAGVRLLQRLAE 124
Query: 221 LIEDISVVESGPH 233
I D++ VES P
Sbjct: 125 EIGDLATVESMPR 137
>gi|145295514|ref|YP_001138335.1| translation initiation factor IF-3 [Corynebacterium glutamicum R]
gi|417972258|ref|ZP_12613169.1| translation initiation factor IF-3 [Corynebacterium glutamicum
S9114]
gi|166198956|sp|A4QDY1.1|IF3_CORGB RecName: Full=Translation initiation factor IF-3
gi|140845434|dbj|BAF54433.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043416|gb|EGV39109.1| translation initiation factor IF-3 [Corynebacterium glutamicum
S9114]
Length = 189
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +A LA DLVEV A PPVCKIMD+ K
Sbjct: 22 RINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPNAKPPVCKIMDYGKF 81
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K + V R ++KG +VK
Sbjct: 82 KYEAAQKARESRKNQQQTVV-----KEQKLRPKIDDHDYETKKNNVIRFLEKGSKVKVTI 136
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ G+++ +LG L RL + + D +VE+ + + ++ GP +KG
Sbjct: 137 MFRGREQARPELGYRLLERLANDVADFGIVETRAKQDGRNMTMVL-----GPVRKG 187
>gi|52081389|ref|YP_080180.1| translation initiation factor IF-3 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319647297|ref|ZP_08001519.1| translation initiation factor IF-3 [Bacillus sp. BT1B_CT2]
gi|52004600|gb|AAU24542.1| initiation factor IF-3 [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317390644|gb|EFV71449.1| translation initiation factor IF-3 [Bacillus sp. BT1B_CT2]
Length = 186
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + SR EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 22 VNEGIRAREVRLIGQNGDQLGIKSRQEALEIAGRANLDLVLVAANAKPPVCRIMDYGKYR 81
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I L KEVR S IE+ D K + + KG +VK
Sbjct: 82 FEQQKKEKEARKNQKIINL-----KEVRLSPGIEEHDFNTKLRNAIKFLQKGDKVKASIR 136
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + +++ VE+ P ++ + + ++
Sbjct: 137 FKGRAITHKEIGQRVLDRFSEACAEVATVETKPKMDGRSMFLVL 180
>gi|19703670|ref|NP_603232.1| translation initiation factor IF-3 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296327259|ref|ZP_06869814.1| translation initiation factor IF3 [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|22095767|sp|Q8R5Y3.1|IF3_FUSNN RecName: Full=Translation initiation factor IF-3
gi|19713790|gb|AAL94531.1| Bacterial Protein Translation Initiation Factor 3 (IF-3)
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296155616|gb|EFG96378.1| translation initiation factor IF3 [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 188
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 12/160 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI + R++ +G + +++ +AL LA S DLVE+ A PPVCKIMD+ K
Sbjct: 25 RINEKIRGKEFRIISFDGEQLGIMTAEQALNLASSQGYDLVEIAPSATPPVCKIMDYSKY 84
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KE++ + +I+ DL+ K + V + ++K +VK
Sbjct: 85 KYEQTRKLKEAKKNQKQVVI-----KEIKVTARIDSHDLETKLNQVTKFLEKENKVKVTL 139
Query: 200 LPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQA 239
+ G+++ +LG ++ L ++ E S VE+K A
Sbjct: 140 VLFGREKMHANLG--VTTLDEIAEKFS---ETAEVEKKYA 174
>gi|255659699|ref|ZP_05405108.1| translation initiation factor IF-3 [Mitsuokella multacida DSM
20544]
gi|260848273|gb|EEX68280.1| translation initiation factor IF-3 [Mitsuokella multacida DSM
20544]
Length = 174
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
EAL +A DLVEV KA PPVC+IMDF K +Y+++ +EK+ AK K + + KE
Sbjct: 16 EALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKYRYEQQKREKE-AKKKQKVI----NIKE 70
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDI 225
V+ IEQ D +K R +++G +VK + G++ +LG LSR+ + D
Sbjct: 71 VKLRPNIEQHDFDVKLKNALRFVEEGNKVKVTIMFRGRELSHPELGKEVLSRVAAALGDA 130
Query: 226 SVVESGPHVERKQAYAII 243
+E +E K I+
Sbjct: 131 VSIERNAKLEGKNMTMIV 148
>gi|110770771|ref|XP_001123266.1| PREDICTED: translation initiation factor IF-3-like, partial [Apis
mellifera]
Length = 283
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 94/167 (56%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GP ++D+I A VRLV +G +V EAL +A ++ +L+EV A+PPV KI+D+
Sbjct: 119 GPLVDDEIRAAQVRLVGADGEMLGIVPTREALKMAYAVGLNLLEVSPNADPPVAKIVDYG 178
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+++ K+K+ A+ K + D KE++ I++ D Q+K + KR + G +VK
Sbjct: 179 KFKYEQQ-KKKNEARKKQKVI----DIKEIKVRPNIDENDYQVKLNAAKRFIAGGDKVKI 233
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L RL +E+++ E +E +Q ++
Sbjct: 234 TLRFRGREMAHQELGVQLLDRLRVDMEEVAKPEQTSKIENRQMIMVL 280
>gi|398788617|ref|ZP_10550764.1| translation initiation factor IF-3 [Streptomyces auratus AGR0001]
gi|396992036|gb|EJJ03154.1| translation initiation factor IF-3 [Streptomyces auratus AGR0001]
Length = 194
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 116 ELGFRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 155
>gi|345850877|ref|ZP_08803865.1| translation initiation factor IF-3 [Streptomyces zinciresistens
K42]
gi|345637629|gb|EGX59148.1| translation initiation factor IF-3 [Streptomyces zinciresistens
K42]
Length = 208
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 155
>gi|317968497|ref|ZP_07969887.1| translation initiation factor IF-3 [Synechococcus sp. CB0205]
Length = 213
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V++R EAL +A+ + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDADGSQLGVITREEALDVAKDRELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRLGQASRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLGGYLSR 217
+ G++ + L L R
Sbjct: 132 VIFRGREIQHTALAEQLLR 150
>gi|292493206|ref|YP_003528645.1| translation initiation factor IF-3 [Nitrosococcus halophilus Nc4]
gi|291581801|gb|ADE16258.1| translation initiation factor IF-3 [Nitrosococcus halophilus Nc4]
Length = 165
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
RLN++I VRL+ EG ++ VS EAL +A DLVE+ +A PPVC+IMD+ K
Sbjct: 2 RLNEEITTPEVRLIGVEGEQIGIVSIEEALRVAEEAGRDLVEIAPQAQPPVCRIMDYGKY 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+++ K + K + I + KEV+F E+ D Q+K + R + +G + K
Sbjct: 62 LFEESKKRQAARKKQKQIQI-----KEVKFRPGTEEGDYQVKLRNLVRFLKEGDKAKVSL 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ D + + VE P E +Q ++
Sbjct: 117 RFRGRELAHQELGLKLLERVRDDLAEYGTVEQNPKREGRQMVMVL 161
>gi|386358843|ref|YP_006057089.1| translation initiation factor IF-3 [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|365809351|gb|AEW97567.1| translation initiation factor IF-3 [Streptomyces cattleya NRRL 8057
= DSM 46488]
Length = 191
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAATARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + ++D+ VES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVQDLGFVESNPKQDGRNMIMVL-----GPHKK 155
>gi|415884130|ref|ZP_11546159.1| translation initiation factor IF-3 [Bacillus methanolicus MGA3]
gi|387591925|gb|EIJ84242.1| translation initiation factor IF-3 [Bacillus methanolicus MGA3]
Length = 167
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VRL+ G + + S++EAL +A + DLV V A PPV +IMD+ K K
Sbjct: 3 LNEGIRAREVRLIDQNGEQLGIKSKNEALEIAARVNLDLVLVAPNAKPPVARIMDYGKYK 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KE++ K + I + KEVR S IE+ D K + ++KG +VK
Sbjct: 63 FEQQKKEREARKNQKII-----NVKEVRLSPTIEEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++I+ VES P ++ + + ++
Sbjct: 118 FKGRAITHKEIGQRVLVRFAEACKEIATVESHPKMDGRSMFMVL 161
>gi|320531667|ref|ZP_08032608.1| translation initiation factor IF-3, partial [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136142|gb|EFW28149.1| translation initiation factor IF-3 [Actinomyces sp. oral taxon 171
str. F0337]
Length = 185
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRVEDALRLAEEADLDLVEVAPDARPPVCKLMDYGKFKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI++ D K V+R + G +VKC+ G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDEHDYATKRGHVERFLKGGDKVKCIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L L + + ++ +ES P
Sbjct: 116 ELGIRLLQGLAEEMAELGTIESHP 139
>gi|313673283|ref|YP_004051394.1| bacterial translation initiation factor 3 (bif-3) [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940039|gb|ADR19231.1| bacterial translation initiation factor 3 (bIF-3) [Calditerrivibrio
nitroreducens DSM 19672]
Length = 175
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 98/172 (56%), Gaps = 6/172 (3%)
Query: 75 EKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCK 132
EK R+N++I A VRL+L++G + +VS EAL +A+ DLVE+ A PPVCK
Sbjct: 3 EKALEQERINEEITASEVRLILEDGKQAGIVSIDEALKIAQERGYDLVEIAPNAKPPVCK 62
Query: 133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
++D+ K K++K KEK+ K + + + KE++ I++ D +K ++R ++ G
Sbjct: 63 LLDYGKFKFEKVKKEKEARKKQRQNMI---ETKELKLRPNIDEHDYDVKLKHIRRFLEDG 119
Query: 193 YRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK + G++ + G L+R+ ++D+ VVE P ++ +Q +I
Sbjct: 120 DKVKLVVRFKGRETMFGEHGIDLLNRITADLQDLCVVEKKPEMQGRQQVMVI 171
>gi|398805316|ref|ZP_10564295.1| translation initiation factor IF-3 [Polaromonas sp. CF318]
gi|398092097|gb|EJL82519.1| translation initiation factor IF-3 [Polaromonas sp. CF318]
Length = 179
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+VS EAL LA DLVE+ A PPVC++MD+ K KY E K+ AK+K +
Sbjct: 17 IVSIAEALRLAGEADVDLVEISPTAVPPVCRLMDYGKFKYA-EQKKAAEAKSKQKVI--- 72
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KEV+F + D +K +KR +++G + K G++ ++LG L+R+ D
Sbjct: 73 -EIKEVKFRPGTDDGDYNIKLRNIKRFLEEGDKCKITLRFRGREITHQELGLALLARIRD 131
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+ D+ VVE P +E +Q +I
Sbjct: 132 ELADLIVVEQFPKLEGRQMVMMI 154
>gi|326440156|ref|ZP_08214890.1| translation initiation factor IF-3 [Streptomyces clavuligerus ATCC
27064]
Length = 192
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 116 ELGFRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 155
>gi|258543037|ref|YP_003188470.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-01]
gi|329115644|ref|ZP_08244366.1| Translation initiation factor IF-3 [Acetobacter pomorum DM001]
gi|384042959|ref|YP_005481703.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-12]
gi|384051476|ref|YP_005478539.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-03]
gi|384054583|ref|YP_005487677.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-07]
gi|384057818|ref|YP_005490485.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-22]
gi|384060459|ref|YP_005499587.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-26]
gi|384063751|ref|YP_005484393.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-32]
gi|384119760|ref|YP_005502384.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|421848891|ref|ZP_16281877.1| translation initiation Factor 3 [Acetobacter pasteurianus NBRC
101655]
gi|421851920|ref|ZP_16284612.1| translation initiation Factor 3 [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|256634115|dbj|BAI00091.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-01]
gi|256637175|dbj|BAI03144.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-03]
gi|256640227|dbj|BAI06189.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-07]
gi|256643284|dbj|BAI09239.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-22]
gi|256646339|dbj|BAI12287.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-26]
gi|256649392|dbj|BAI15333.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-32]
gi|256652378|dbj|BAI18312.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|256655436|dbj|BAI21363.1| translation initiation Factor 3 (IF-3) [Acetobacter pasteurianus
IFO 3283-12]
gi|326695072|gb|EGE46791.1| Translation initiation factor IF-3 [Acetobacter pomorum DM001]
gi|371460411|dbj|GAB27080.1| translation initiation Factor 3 [Acetobacter pasteurianus NBRC
101655]
gi|371479939|dbj|GAB29815.1| translation initiation Factor 3 [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 162
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I VRL+ + G +++ +ALA A S+ DL+E+ A PPV KI+D+ K K
Sbjct: 1 MNEEIRVPQVRLIDENGEMAGIMTVRDALAKAYSVGLDLLEISPNAEPPVAKILDYGKFK 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K+++ AK K + + KEV+ I++ D Q+K VK + +G +VK
Sbjct: 61 YEQQ-KKRNEAKKKQKVI----EIKEVKVRPNIDENDYQVKMRAVKTFIGEGDKVKVTLR 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ +++++ VE P +E +Q ++
Sbjct: 116 FRGREMAHQELGIKVLERIRGEMDEVAKVEQMPRLENRQMIMVL 159
>gi|406998581|gb|EKE16500.1| hypothetical protein ACD_11C00005G0008 [uncultured bacterium]
Length = 214
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 7/137 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N+ I V ++ DEG+K+ ++ +AL+LAR + DLVEV KA PPVCKIMD
Sbjct: 44 TQQFRINEYIRTPRVSVIDDEGNKLGEMNTIDALSLAREKELDLVEVSPKAQPPVCKIMD 103
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K++Y++ +++ AKAK KG VR + + DL +K D ++ + KG++V
Sbjct: 104 YGKQQYKQSKQQR-LAKAKQKTVETKG----VRLGFRTDDHDLGIKKDQTEKFLKKGHKV 158
Query: 196 KCMALPVGKKEETEDLG 212
K + G+++ +D+G
Sbjct: 159 KIEIILRGREKAHQDIG 175
>gi|440680735|ref|YP_007155530.1| bacterial translation initiation factor 3 (bIF-3) [Anabaena
cylindrica PCC 7122]
gi|428677854|gb|AFZ56620.1| bacterial translation initiation factor 3 (bIF-3) [Anabaena
cylindrica PCC 7122]
Length = 177
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + ++ EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGAQLGIMPPQEALQLAEDKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQ-----HTADVKEVKMRYKIEEHDYLVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ ++ + V+ P E + +I
Sbjct: 128 VMFRGREIQHSDLAETLLKRMATDLDALGEVQQAPKKEGRNMMMLI 173
>gi|332637333|ref|ZP_08416196.1| translation initiation factor IF-3 [Weissella cibaria KACC 11862]
Length = 165
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK-VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
+ND+I A+ VRL+ D+G + ++S+ +A A+A + DLV V A PPV KIMD+ K ++
Sbjct: 2 INDRIRAREVRLITDDGDQGIMSKADAQAIADEQELDLVLVQANAKPPVAKIMDYGKFRF 61
Query: 142 QKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALP 201
+ K++++ K + +++ KEVR S I+ D K + ++KG +VK
Sbjct: 62 DSQKKQREQRKNQKIVSI-----KEVRLSPTIDDNDFNTKKKNAVKFLEKGNKVKVSIRF 116
Query: 202 VGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G + R +E+I+ VES +E + + ++
Sbjct: 117 RGRAITHKEIGREVMDRFATDLEEIAKVESRAKMEGRSMFMVL 159
>gi|295109210|emb|CBL23163.1| bacterial translation initiation factor 3 (bIF-3) [Ruminococcus
obeum A2-162]
Length = 164
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 22/163 (13%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ +G + +VS EA A A+ DLV++ +A PPVCKI+D+ K +
Sbjct: 2 INEQIRDKEVRLIGPDGAQLGIVSSREAFAKAQEAGLDLVKIAPQAKPPVCKIIDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC--- 197
Y EL K++ K T+ D KEVR S I+ DL+ K + ++ + KG RVK
Sbjct: 62 Y--ELSRKEKEAKKKQKTI---DIKEVRLSPNIDTNDLKTKVNAARKFLSKGDRVKVTLR 116
Query: 198 -----MALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVE 235
MA K +D +L+ DI+VVE P +E
Sbjct: 117 FRGREMAHMSSSKHVLDDFA-------ELLTDIAVVEKAPKIE 152
>gi|153809789|ref|ZP_01962457.1| hypothetical protein RUMOBE_00170 [Ruminococcus obeum ATCC 29174]
gi|149833967|gb|EDM89047.1| translation initiation factor IF-3 [Ruminococcus obeum ATCC 29174]
Length = 164
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 22/163 (13%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ +G + +VS EA A A+ DLV++ +A PPVCKI+D+ K +
Sbjct: 2 INEQIRDKEVRLIGPDGAQLGIVSSREAFAKAQEAGLDLVKIAPQAKPPVCKIIDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC--- 197
Y EL K++ K T+ D KEVR S I+ DL+ K + ++ + KG RVK
Sbjct: 62 Y--ELSRKEKEAKKKQKTI---DIKEVRLSPNIDTNDLKTKVNAARKFLSKGDRVKVTLR 116
Query: 198 -----MALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVE 235
MA K +D +L+ D++VVE P +E
Sbjct: 117 FRGREMAHMASSKHVLDDFA-------ELLADVAVVEKAPKIE 152
>gi|225022607|ref|ZP_03711799.1| hypothetical protein CORMATOL_02649 [Corynebacterium matruchotii
ATCC 33806]
gi|305682038|ref|ZP_07404842.1| translation initiation factor IF-3 [Corynebacterium matruchotii
ATCC 14266]
gi|224944515|gb|EEG25724.1| hypothetical protein CORMATOL_02649 [Corynebacterium matruchotii
ATCC 33806]
gi|305658511|gb|EFM48014.1| translation initiation factor IF-3 [Corynebacterium matruchotii
ATCC 14266]
Length = 145
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 106 HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCK 165
+A LA DLVEV A PPVCKIMD+ K KY++ K ++ K + + K
Sbjct: 4 EDARKLAYDADLDLVEVAPNAKPPVCKIMDYGKFKYEQAQKAREARKNQQQTVV-----K 58
Query: 166 EVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIED 224
E +F KI+ D + K V R ++KG +VK + G+++ +LG L RL + + D
Sbjct: 59 EQKFRPKIDDHDYETKKSNVIRFLEKGSKVKVTIMFRGREQSRPELGTRLLDRLAEDVAD 118
Query: 225 ISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+VES P + + + FGP +KG
Sbjct: 119 YGIVESKPKQDGRNMTMV-----FGPVRKG 143
>gi|85374713|ref|YP_458775.1| translation initiation factor IF-3 [Erythrobacter litoralis
HTCC2594]
gi|84787796|gb|ABC63978.1| translation initiation factor 3 [Erythrobacter litoralis HTCC2594]
Length = 172
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR ++ I + VR++ DEG V+ EA+ A+ +LVEV A+PPV K +D
Sbjct: 7 SGPRYDNFIQSPKVRVIDDEGENLGVMFTKEAMEQAQEKGLNLVEVSPNADPPVAKFLDV 66
Query: 137 HKEKYQKELKEKDRAKAKSDI---TLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
K +Y+ A+ K+++ T K D KEV+ I+ D +K V + ++ G
Sbjct: 67 GKYRYE--------AQKKANLARKTQKTQDIKEVKMRPNIDTHDYDVKMRNVNKFIENGD 118
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ ++LG L+R+ D +E+I+ VE+ P +E +Q ++
Sbjct: 119 KVKVTLRFRGREMAHQNLGMDLLNRVRDDVEEIAKVEAFPRLEGRQMLMVL 169
>gi|373116563|ref|ZP_09530716.1| translation initiation factor IF-3 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371669441|gb|EHO34543.1| translation initiation factor IF-3 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 210
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 8/159 (5%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
G ++N++I + VRLV D G + ++S EAL A DLV++ ANPPVCK+MD+
Sbjct: 38 GHQINEEIRDKEVRLVSDTGEQLGIMSAREALERAMDANLDLVKISPTANPPVCKLMDYG 97
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K K+++ +EK+ K + + + KEVR S I+ D +K ++ + +G RVK
Sbjct: 98 KYKFEQTKREKEARKNQHVVEI-----KEVRMSPSIDVNDFNVKLRNAQKFLAEGNRVKV 152
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ D+G G L + + +++ ++ P ++
Sbjct: 153 TVRFRGREMAHTDIGKGLLLKFAEQCGEVATLDKDPKLD 191
>gi|365826261|ref|ZP_09368204.1| translation initiation factor IF-3 [Actinomyces graevenitzii C83]
gi|365257058|gb|EHM87136.1| translation initiation factor IF-3 [Actinomyces graevenitzii C83]
Length = 190
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA DLVEV A PPVCK+MD+ K KY+ +K +D
Sbjct: 1 MRLVGPSGEQVGVVRLEDALRLAEEADLDLVEVAPDARPPVCKLMDYGKYKYESAMKARD 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ +++ L KE++F KI+ D K V+R + G +VK + G+++
Sbjct: 61 ARRNQANTQL-----KEIQFRPKIDDHDYATKRGHVERFLKGGDKVKAIVRFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L RL + + +++ VES P
Sbjct: 116 ELGIRLLQRLAEEVSELATVESHP 139
>gi|329117528|ref|ZP_08246245.1| translation initiation factor IF-3 [Streptococcus parauberis NCFD
2020]
gi|326907933|gb|EGE54847.1| translation initiation factor IF-3 [Streptococcus parauberis NCFD
2020]
gi|456370675|gb|EMF49571.1| Translation initiation factor 3 [Streptococcus parauberis
KRS-02109]
gi|457095679|gb|EMG26150.1| Translation initiation factor 3 [Streptococcus parauberis
KRS-02083]
Length = 176
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 8/161 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND+I + VRLV EG + + + EA ALA SL DLV + +A PPV KIMD+ K K
Sbjct: 11 INDEIRVREVRLVGLEGEQLGIKTLSEAQALADSLNVDLVLIQPQAVPPVAKIMDYGKFK 70
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ + K+K++ K +S +T+ KEVR S I++ D + K ++ ++KG +VK
Sbjct: 71 FEYQKKQKEQRKKQSVVTV-----KEVRLSPVIDKGDFETKLRNGRKFLEKGNKVKVSIR 125
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAY 240
G+ +++G L+ + +DIS++E ++ +Q +
Sbjct: 126 FKGRMITHKEIGAKVLAEFAEATQDISIIEQRAKMDGRQMF 166
>gi|398305986|ref|ZP_10509572.1| translation initiation factor IF-3 [Bacillus vallismortis DV1-F-3]
Length = 167
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + SR EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 2 VNEGIRAREVRLIGQNGDQLGIKSRQEALEIAGRANLDLVLVAANAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+K+ K + I L KEVR S I++ D K + ++KG +VK
Sbjct: 62 FEQQKKDKEARKNQKIINL-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + D++ VE+ P ++ + + ++
Sbjct: 117 FKGRAITHKEIGQRVLDRFSEACADVATVETKPKMDGRSMFLML 160
>gi|225574524|ref|ZP_03783134.1| hypothetical protein RUMHYD_02601 [Blautia hydrogenotrophica DSM
10507]
gi|225038255|gb|EEG48501.1| translation initiation factor IF-3 [Blautia hydrogenotrophica DSM
10507]
Length = 177
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 8/163 (4%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
K S +N++I + VRL+ +G + ++S EA+ A+ DLV++ +A PPVCKI
Sbjct: 8 KTISNLSINEQIRDKEVRLIGPDGAQMGIMSAREAMLKAQEAGLDLVKIAPQAKPPVCKI 67
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
+D+ K KY+ KEK+ A+ K I D KEVR S I+ DL+ K + ++ + KG
Sbjct: 68 IDYGKYKYELARKEKE-ARKKQKII----DVKEVRLSPNIDTNDLKTKVNAARKFLSKGD 122
Query: 194 RVKCMALPVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
RVK G++ L + ++D++ VE P VE
Sbjct: 123 RVKVTLRFRGREMAHMHSSKHVLDDFAEQLKDVATVEKAPKVE 165
>gi|329943114|ref|ZP_08291888.1| translation initiation factor IF-3 [Chlamydophila psittaci Cal10]
gi|332287696|ref|YP_004422597.1| translation initiation factor IF-3 [Chlamydophila psittaci 6BC]
gi|384450855|ref|YP_005663455.1| translation initiation factor IF-3 [Chlamydophila psittaci 6BC]
gi|384451849|ref|YP_005664447.1| translation initiation factor IF-3 [Chlamydophila psittaci 01DC11]
gi|384452823|ref|YP_005665420.1| translation initiation factor IF-3 [Chlamydophila psittaci 08DC60]
gi|384453802|ref|YP_005666398.1| translation initiation factor IF-3 [Chlamydophila psittaci C19/98]
gi|384454781|ref|YP_005667376.1| translation initiation factor IF-3 [Chlamydophila psittaci 02DC15]
gi|392376927|ref|YP_004064705.1| initiation factor IF-3 [Chlamydophila psittaci RD1]
gi|406594561|ref|YP_006741934.1| translation initiation factor IF-3 [Chlamydia psittaci MN]
gi|407455601|ref|YP_006734492.1| translation initiation factor IF-3 [Chlamydia psittaci GR9]
gi|407457018|ref|YP_006735591.1| translation initiation factor IF-3 [Chlamydia psittaci VS225]
gi|407458339|ref|YP_006736644.1| translation initiation factor IF-3 [Chlamydia psittaci WS/RT/E30]
gi|407459587|ref|YP_006737690.1| translation initiation factor IF-3 [Chlamydia psittaci M56]
gi|407460958|ref|YP_006738733.1| translation initiation factor IF-3 [Chlamydia psittaci WC]
gi|410858710|ref|YP_006974650.1| initiation factor IF-3 [Chlamydia psittaci 01DC12]
gi|424825392|ref|ZP_18250379.1| translation initiation factor IF-3 [Chlamydophila abortus LLG]
gi|449071415|ref|YP_007438495.1| translation initiation factor IF-3 [Chlamydophila psittaci Mat116]
gi|313848270|emb|CBY17271.1| initiation factor IF-3 [Chlamydophila psittaci RD1]
gi|325506988|gb|ADZ18626.1| translation initiation factor IF-3 [Chlamydophila psittaci 6BC]
gi|328814661|gb|EGF84651.1| translation initiation factor IF-3 [Chlamydophila psittaci Cal10]
gi|328914949|gb|AEB55782.1| translation initiation factor IF-3 [Chlamydophila psittaci 6BC]
gi|333410491|gb|EGK69478.1| translation initiation factor IF-3 [Chlamydophila abortus LLG]
gi|334692583|gb|AEG85802.1| translation initiation factor IF-3 [Chlamydophila psittaci C19/98]
gi|334693559|gb|AEG86777.1| translation initiation factor IF-3 [Chlamydophila psittaci 01DC11]
gi|334694538|gb|AEG87755.1| translation initiation factor IF-3 [Chlamydophila psittaci 02DC15]
gi|334695512|gb|AEG88728.1| translation initiation factor IF-3 [Chlamydophila psittaci 08DC60]
gi|405782144|gb|AFS20893.1| translation initiation factor IF-3 [Chlamydia psittaci GR9]
gi|405782993|gb|AFS21741.1| translation initiation factor IF-3 [Chlamydia psittaci MN]
gi|405784279|gb|AFS23026.1| translation initiation factor IF-3 [Chlamydia psittaci VS225]
gi|405785473|gb|AFS24219.1| translation initiation factor IF-3 [Chlamydia psittaci WS/RT/E30]
gi|405785631|gb|AFS24376.1| translation initiation factor IF-3 [Chlamydia psittaci M56]
gi|405786644|gb|AFS25388.1| translation initiation factor IF-3 [Chlamydia psittaci WC]
gi|410811605|emb|CCO02258.1| initiation factor IF-3 [Chlamydia psittaci 01DC12]
gi|449039923|gb|AGE75347.1| translation initiation factor IF-3 [Chlamydophila psittaci Mat116]
Length = 186
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 83 LNDKINAQF----VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
LN KIN Q VRL+ G + +++ +AL LAR DLVEV + PPVCKIMD+
Sbjct: 3 LNLKINRQIRAPKVRLIGSAGEQLGILNTKDALDLARESDLDLVEVASNSEPPVCKIMDY 62
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y KEKD KA+ + + KEV+ I+ D K + ++KG +VK
Sbjct: 63 GKYRYNLTKKEKDSKKAQHQVRV-----KEVKLKPNIDDNDFATKLKQARGFIEKGNKVK 117
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + ++ +ED+ +ES P + + ++
Sbjct: 118 ITCMFRGRELAYPEHGYKVVQKMSQGLEDVGFIESEPKLNGRSLICVV 165
>gi|33862392|ref|NP_893952.1| translation initiation factor IF-3 [Prochlorococcus marinus str.
MIT 9313]
gi|39931215|sp|Q7TV76.1|IF3_PROMM RecName: Full=Translation initiation factor IF-3
gi|33640505|emb|CAE20294.1| Translatioin Initiation factor 3 [Prochlorococcus marinus str. MIT
9313]
Length = 219
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V++R EAL +A+ + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPKLRVVDADGTQLGVINREEALDVAKDRELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYNVRIGQAVRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + L L R+ +E+ + ++ P E
Sbjct: 132 VIFRGREIQHTALAETLLRRMAKDLEEQAEIQQAPKRE 169
>gi|345875522|ref|ZP_08827314.1| translation initiation factor IF-3 [Neisseria weaveri LMG 5135]
gi|343968815|gb|EGV37037.1| translation initiation factor IF-3 [Neisseria weaveri LMG 5135]
Length = 155
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ G + VVS EALA+A DLVE+ A PPVCK+MDF K KY++ K++D
Sbjct: 1 MRLISGSGEQLGVVSVREALAMAEEQDVDLVEISPTAKPPVCKLMDFGKYKYEQS-KKRD 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K KE++F ++ D Q+K + R ++ G +VK G++ +
Sbjct: 60 EAKKKQKQVQI----KEIKFRPGTDEGDYQIKMRNINRFLEDGDKVKVTLRFRGREMAHQ 115
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
LG L R+ + + ++ VE P +E +Q +I P KK
Sbjct: 116 QLGAQLLERVKEDLAEVGTVEQFPKMEGRQMVMMI-----APKKK 155
>gi|404490266|ref|YP_006714372.1| translation initiation factor IF-3 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423683369|ref|ZP_17658208.1| translation initiation factor IF-3 [Bacillus licheniformis WX-02]
gi|52349267|gb|AAU41901.1| translation initiation factor IF-3 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|383440143|gb|EID47918.1| translation initiation factor IF-3 [Bacillus licheniformis WX-02]
Length = 211
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + SR EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 47 VNEGIRAREVRLIGQNGDQLGIKSRQEALEIAGRANLDLVLVAANAKPPVCRIMDYGKYR 106
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I L KEVR S IE+ D K + + KG +VK
Sbjct: 107 FEQQKKEKEARKNQKIINL-----KEVRLSPGIEEHDFNTKLRNAIKFLQKGDKVKASIR 161
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + +++ VE+ P ++ + + ++
Sbjct: 162 FKGRAITHKEIGQRVLDRFSEACAEVATVETKPKMDGRSMFLVL 205
>gi|419759849|ref|ZP_14286134.1| translation initiation factor IF-3 [Thermosipho africanus
H17ap60334]
gi|407514888|gb|EKF49674.1| translation initiation factor IF-3 [Thermosipho africanus
H17ap60334]
Length = 152
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Query: 94 LVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRA 151
+V EG + V+ +AL LA S + DL+ V A PPV KIMD+ K KY+ +EK
Sbjct: 1 MVNQEGKQLGVMPTQKALDLAYSQKLDLILVAPNAKPPVAKIMDYGKYKYELAKREKKAK 60
Query: 152 KAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDL 211
K + I + K+++F KI++ D Q K +KR ++ G +V+ + + G++ D
Sbjct: 61 KNQKII-----EVKQMKFRIKIDEHDYQTKLKHIKRFLEAGNKVRVVIMFRGREMAFADK 115
Query: 212 GG-YLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
G L R+I ++D++ VE P +E + + +++
Sbjct: 116 GKEILDRIIKDLQDVASVEKAPKLEGRDMWMMLK 149
>gi|342215687|ref|ZP_08708334.1| translation initiation factor IF-3 [Peptoniphilus sp. oral taxon
375 str. F0436]
gi|341586577|gb|EGS29977.1| translation initiation factor IF-3 [Peptoniphilus sp. oral taxon
375 str. F0436]
Length = 184
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E ++N+ I + VRLV +G + VV A LA + DLV+V A PPVC+IM
Sbjct: 11 EIKDLQINEAIRDKEVRLVGSDGEQIGVVDIAHAQNLADEAKLDLVKVAPGAKPPVCRIM 70
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K KY KEK+ K + I + KE+RFS IE+ DLQ KA+ K + G R
Sbjct: 71 DYGKYKYDLMKKEKESKKKQKVINV-----KELRFSPNIEEHDLQTKANQGKSFLSAGDR 125
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VK G++ D+G L R ++LI D VV+ P +E
Sbjct: 126 VKVSVRFRGRELGHTDIGRKVLDRFVELIADEGVVDKAPKME 167
>gi|237742396|ref|ZP_04572877.1| translation initiation factor IF-3 [Fusobacterium sp. 4_1_13]
gi|256845724|ref|ZP_05551182.1| translation initiation factor IF-3 [Fusobacterium sp. 3_1_36A2]
gi|294785030|ref|ZP_06750318.1| translation initiation factor IF-3 [Fusobacterium sp. 3_1_27]
gi|229430044|gb|EEO40256.1| translation initiation factor IF-3 [Fusobacterium sp. 4_1_13]
gi|256719283|gb|EEU32838.1| translation initiation factor IF-3 [Fusobacterium sp. 3_1_36A2]
gi|294486744|gb|EFG34106.1| translation initiation factor IF-3 [Fusobacterium sp. 3_1_27]
Length = 180
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI + R++ +G + +++ +AL LA S DLVE+ A PPVCKIMD+ K
Sbjct: 17 RINEKIRGKEFRIISFDGEQLGIMTAEQALNLASSQGYDLVEIAPSATPPVCKIMDYSKY 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KE++ + +I+ DL+ K + V + ++K +VK
Sbjct: 77 KYEQTRKLKEAKKNQKQVVI-----KEIKVTARIDSHDLETKLNQVTKFLEKENKVKVTL 131
Query: 200 LPVGKKEETEDLG 212
+ G+++ +LG
Sbjct: 132 VLFGREKMHANLG 144
>gi|384261310|ref|YP_005416496.1| Bacterial translation initiation factor 3 (BIF-3) [Rhodospirillum
photometricum DSM 122]
gi|378402410|emb|CCG07526.1| Bacterial translation initiation factor 3 (BIF-3) [Rhodospirillum
photometricum DSM 122]
Length = 173
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 13/180 (7%)
Query: 67 VQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDR 124
+QA KD GPR N +I VRL+ + G V V +AL A + DLVE+
Sbjct: 1 MQASPSKD-----GPRANREIRIPEVRLIDENGENVGVVPTRDALYRAEAAGLDLVEISP 55
Query: 125 KANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADT 184
A+PPVCKI+D K KY+ + K+ + K + I + KE++ I+ D +K
Sbjct: 56 NADPPVCKILDLGKFKYEAQKKKNEAKKKQKVIEI-----KEIKIRPNIDDHDYDVKMRA 110
Query: 185 VKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
++ +++G +VK G++ +D+G G L R+ D + +++ +E P +E +Q ++
Sbjct: 111 ARKFLEEGDKVKVTLRFRGREMAHQDIGMGVLKRVSDDVAEMAKIEQHPKLEGRQMIMVM 170
>gi|294010777|ref|YP_003544237.1| translation initiation factor IF-3 [Sphingobium japonicum UT26S]
gi|292674107|dbj|BAI95625.1| translation initiation factor IF-3 [Sphingobium japonicum UT26S]
Length = 177
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR N+ IN VR++ DEG V+ EA+ A + DLVEV A+PPVCK +D
Sbjct: 12 SGPRYNEFINVPKVRVIDDEGENLGVMYTQEAIERAYEIGLDLVEVSPNADPPVCKFLDI 71
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ + K K T + + KE++ I+ D K V + +G +VK
Sbjct: 72 GKYKYEAQKKANLARK-----TQRTQEIKEIKMRPNIDDHDYDTKMKKVHDFIGEGDKVK 126
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L R+ + + +I+ VE+ P +E +Q ++
Sbjct: 127 ITLRFRGRELSHQQLGMQLLQRVAENVGEIAKVEAYPRMEGRQMLMVL 174
>gi|282901427|ref|ZP_06309352.1| Initiation factor 3 [Cylindrospermopsis raciborskii CS-505]
gi|281193706|gb|EFA68678.1| Initiation factor 3 [Cylindrospermopsis raciborskii CS-505]
Length = 177
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ EG + +++ EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDSEGAQLGIMAPLEALRLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQHT-----ADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L+R+ +E V+ P E + +I
Sbjct: 128 VMFRGREIQHSDLAETLLNRMATDLEPFGEVQQAPKKEGRNMMMLI 173
>gi|381202519|ref|ZP_09909633.1| translation initiation factor IF-3 [Sphingobium yanoikuyae XLDN2-5]
Length = 176
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR N+ I VR++ DEG V+ EA+ A + DLVEV A+PPVCK +D
Sbjct: 11 SGPRYNEFITVPKVRVIDDEGENLGVMFTQEAIEQAADVGLDLVEVSPNADPPVCKFLDI 70
Query: 137 HKEKYQKELKEKDRAKAKSDI---TLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
K KY+ A+ K++I T K + KE++ I+ D K V + G
Sbjct: 71 GKFKYE--------AQKKANIARKTQKTQELKEIKMRPNIDDHDYDTKMKKVHDFIGDGD 122
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ + LG L R+ + + +I+ VE+ P +E +Q ++
Sbjct: 123 KVKITLRFRGRELSHQQLGMNLLQRVAENVAEIAKVEAYPRMEGRQMLMVL 173
>gi|291614197|ref|YP_003524354.1| translation initiation factor IF-3 [Sideroxydans lithotrophicus
ES-1]
gi|291584309|gb|ADE11967.1| translation initiation factor IF-3 [Sideroxydans lithotrophicus
ES-1]
Length = 172
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I A VRL+ EG +V V+ EAL +A + DLVE+ A PPVC+IMD K
Sbjct: 8 RINEQITAPQVRLIGAEGEQVGVVAIAEALRMADEAELDLVEIAPLAEPPVCRIMDIGKF 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY E K++ AK K K+ KE++F ++ D +K + + + G + K
Sbjct: 68 KY-AEAKKQHEAKLKQ----KQVQIKEIKFRPGTDEGDYNIKLRNLIKFLGDGDKTKITL 122
Query: 200 LPVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ +++G L R+ +++ VVE P +E +Q ++ GP KK
Sbjct: 123 RFRGREMAHQEIGMKLIERIKGDLDEYGVVEQFPKMEGRQMVMVL-----GPKKK 172
>gi|345892393|ref|ZP_08843215.1| translation initiation factor IF-3 [Desulfovibrio sp. 6_1_46AFAA]
gi|345047295|gb|EGW51161.1| translation initiation factor IF-3 [Desulfovibrio sp. 6_1_46AFAA]
Length = 170
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 8/159 (5%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
G R N+ I A+ VR++ +G + ++ R+EA+ALA+ DLVEV + PPVC+IMD+
Sbjct: 5 GVRRNELIRAREVRVIGADGEQMGILQRNEAIALAKEGGMDLVEVASTSEPPVCRIMDYG 64
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KY+++ K+ + K ++ + + KE++ K + D + K ++R ++ G R K
Sbjct: 65 KFKYEQQKKKAEAKKRQTVVQI-----KEIKVRPKTDDHDYETKLRHIRRFLEDGDRCKI 119
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ +D G L R++ + D++ V+ P E
Sbjct: 120 TVFFRGREIVHKDRGLNILERVVQDLADVAKVDQEPRAE 158
>gi|303325498|ref|ZP_07355941.1| translation initiation factor IF-3 [Desulfovibrio sp. 3_1_syn3]
gi|302863414|gb|EFL86345.1| translation initiation factor IF-3 [Desulfovibrio sp. 3_1_syn3]
Length = 176
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPV 130
+ E G R N+ I A+ VR++ +G + ++ R+EA+ALA+ DLVEV + PPV
Sbjct: 4 RREMPQDGVRRNELIRAREVRVIGADGEQLGILQRNEAIALAKEGGMDLVEVASTSEPPV 63
Query: 131 CKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMD 190
C+IMD+ K KY+++ K+ + K ++ + + KE++ K + D + K ++R ++
Sbjct: 64 CRIMDYGKFKYEQQKKKAEAKKRQTVVQI-----KEIKVRPKTDDHDYETKLRHIRRFLE 118
Query: 191 KGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G R K G++ +D G L R++ + D++ V+ P E
Sbjct: 119 DGDRCKITVFFRGREIVHKDRGLNILERVVQDLADVAKVDQEPRAE 164
>gi|19552595|ref|NP_600597.1| translation initiation factor IF-3 [Corynebacterium glutamicum ATCC
13032]
gi|62390263|ref|YP_225665.1| translation initiation factor IF-3 [Corynebacterium glutamicum ATCC
13032]
gi|23821719|sp|Q8NQP8.1|IF3_CORGL RecName: Full=Translation initiation factor IF-3
gi|21324146|dbj|BAB98771.1| Translation initiation factor IF3 [Corynebacterium glutamicum ATCC
13032]
gi|41325600|emb|CAF21389.1| TRANSLATION INITIATION FACTOR IF3 PROTEIN [Corynebacterium
glutamicum ATCC 13032]
Length = 189
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +A LA DLVEV A PPVCKIMD+ K
Sbjct: 22 RINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPNAKPPVCKIMDYGKF 81
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K + V R ++KG +VK
Sbjct: 82 KYEAAQKARESRKNQQQTVV-----KEQKLRPKIDDHDYETKKNNVIRFLEKGSKVKVTI 136
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ G+++ +LG L RL + + D +VE+ + + ++ GP +KG
Sbjct: 137 MFRGREQARPELGYRLLERLANDVVDFGIVETRAKQDGRNMTMVL-----GPVRKG 187
>gi|254432422|ref|ZP_05046125.1| translation initiation factor IF-3 [Cyanobium sp. PCC 7001]
gi|197626875|gb|EDY39434.1| translation initiation factor IF-3 [Cyanobium sp. PCC 7001]
Length = 230
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 9/147 (6%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +N++IN +R+V +G + V++R AL +AR + DLV V KA+PPVC+IMD+ K
Sbjct: 16 PNINERINYPQLRVVDADGSQLGVITREAALEVARDRELDLVLVSEKADPPVCRIMDYGK 75
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ R + G +VKC
Sbjct: 76 YKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQASRFLKAGDKVKCT 130
Query: 199 ALPVGKKEETEDLGGYLSRLIDLIEDI 225
+ G++ + L L L+ + +D+
Sbjct: 131 VIFRGREIQHTALAEVL--LMRMAKDL 155
>gi|259505617|ref|ZP_05748519.1| translation initiation factor IF-3 [Corynebacterium efficiens
YS-314]
gi|29427498|sp|Q8FTQ2.2|IF3_COREF RecName: Full=Translation initiation factor IF-3
gi|259166782|gb|EEW51336.1| translation initiation factor IF-3 [Corynebacterium efficiens
YS-314]
Length = 203
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +A LA DLVEV A PPVCKIMD+ K
Sbjct: 36 RINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPTAKPPVCKIMDYGKF 95
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K V R ++KG +VK
Sbjct: 96 KYEAAQKARESRKNQQQTVV-----KEQKLRPKIDDHDYETKKSNVIRFLEKGSKVKVTI 150
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ G+++ +LG L RL + + + VVE+ + + +I GP +KG
Sbjct: 151 MFRGREQARPELGYRLLERLANDVAEYGVVETRAKQDGRNMTMVI-----GPLRKG 201
>gi|443313913|ref|ZP_21043523.1| translation initiation factor IF-3 [Synechocystis sp. PCC 7509]
gi|442776326|gb|ELR86609.1| translation initiation factor IF-3 [Synechocystis sp. PCC 7509]
Length = 175
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ EA+ +A DLV + KA PPVC+IMD+ K
Sbjct: 11 PQINERIRFPEIRVIDSDGAQLGIITPTEAMTIAEERGLDLVLLSDKAEPPVCRIMDYGK 70
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D +++ + +R + G +VK
Sbjct: 71 YKFEQEKKAREARKKQ-----HTADVKEVKMRYKIEEHDYKVRINQAERFLKDGDKVKAT 125
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ ++ V+ P E + +I
Sbjct: 126 VMFRGREIQHSDLAETLLKRMATDLQTFGEVQQAPKKEGRNMMMLI 171
>gi|357404260|ref|YP_004916184.1| translation initiation factor IF-3 [Methylomicrobium alcaliphilum
20Z]
gi|351716925|emb|CCE22590.1| Translation initiation factor IF-3 [Methylomicrobium alcaliphilum
20Z]
Length = 167
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND I ++ VR+V +G ++S EA LA DLVE+ A+PPVCK+MD+ K
Sbjct: 2 RINDTITSRRVRVVGADGEALGIISIDEAKQLAYDNDLDLVEISPNADPPVCKVMDYGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
++++ K++ K + I + KEV+F E+ D Q+K + + +++G + K
Sbjct: 62 QFEQNKKQQAAKKKQKQIQV-----KEVKFRPGTEEGDYQVKLKNLTKFLEEGNKTKITL 116
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ ++LG L R+ +E++++VE P +E +Q ++ GP KK
Sbjct: 117 RFRGREMAHKELGMDLLKRIEKDLEELALVEQFPKMEGRQMVMVM-----GPKKK 166
>gi|182679072|ref|YP_001833218.1| translation initiation factor IF-3 [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634955|gb|ACB95729.1| translation initiation factor IF-3 [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 219
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+N I + ++L+ EGH +V +A LA DLVE+ A PPVCKI+
Sbjct: 51 QKDGPRINHDIRVREIQLIDAEGHNRGIVPILDAQRLADEASLDLVEIVPNATPPVCKIL 110
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ K ++ E K+ A+ K I + KE++ I++ D K VKR ++G +
Sbjct: 111 DYGKFRFL-EQKKAAEARKKQKIV----EIKEIKLRPGIDEHDYDTKMKAVKRFFEEGDK 165
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + VE+ P +E +Q ++
Sbjct: 166 VKVTLRFRGREMAHQDLGFRLLERVKSETGTFAKVEAEPSMEGRQMIMVL 215
>gi|436842862|ref|YP_007327240.1| initiation factor IF-3 [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432171768|emb|CCO25141.1| initiation factor IF-3 [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 145
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V+ +AL +A+ DLVEV KA+PPVCKIMD+ K KYQ++ ++++ K ++ I +
Sbjct: 3 VLPTAKALEIAQERGLDLVEVAEKADPPVCKIMDYGKFKYQQQKRKQEAKKKQTVIQI-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KEV+F K ++ D Q K ++R ++ G R K G++ +D G L R+ +
Sbjct: 61 ---KEVKFRPKTDEHDYQTKLKHIRRFLEGGDRCKVTIFFRGREIVHKDRGLSVLERVKE 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVK 247
DI+ +E P E + ++ +K
Sbjct: 118 ETMDIAKMEQSPRSEGRTMNMMLAPIK 144
>gi|337286944|ref|YP_004626417.1| translation initiation factor IF-3 [Thermodesulfatator indicus DSM
15286]
gi|335359772|gb|AEH45453.1| translation initiation factor IF-3 [Thermodesulfatator indicus DSM
15286]
Length = 174
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRL+ +G +V VSR EAL LA DLVE+ +A+PPVC+IMD+ +
Sbjct: 10 RVNERIRVPKVRLIDADGKQVGIVSREEALRLAEEQGLDLVEIAPQADPPVCRIMDYGQF 69
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
YQ+ K K+ K ++ + + KE++ K + DL+ K +KR + +VK
Sbjct: 70 LYQQAKKAKEAKKKQAVV-----EVKEIKVRPKTDTHDLETKIRHIKRFLKDKNKVKIRV 124
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
G++ +LG L ++++ +E+ + VE P +E +Q I+ GP K
Sbjct: 125 FFRGREITKPELGMEVLKKILEAVENEAQVEMRPRMEGRQMIMIL-----GPKK 173
>gi|386333319|ref|YP_006029488.1| translation initiation factor if-3 [Ralstonia solanacearum Po82]
gi|334195767|gb|AEG68952.1| translation initiation factor if-3 [Ralstonia solanacearum Po82]
Length = 183
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A +RL EG + +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 18 RINREITAPEIRLTGVEGEQLGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ AK K + KEV+F + D ++K +KR +D+G R K
Sbjct: 78 KYQ-EQKKAHEAKLKQKVI----QVKEVKFRPGTDDGDYEVKLRNLKRFLDEGDRAKITL 132
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +++G L RL +E+ + VE P +E +Q ++
Sbjct: 133 RFRGREMAHQEIGARMLERLKVDLEEHAQVEQMPKMEGRQMVMML 177
>gi|386387479|ref|ZP_10072489.1| translation initiation factor IF-3 [Streptomyces tsukubaensis
NRRL18488]
gi|385665057|gb|EIF88790.1| translation initiation factor IF-3 [Streptomyces tsukubaensis
NRRL18488]
Length = 196
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL +ED+ +ES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLASDVEDLGFIESNPKQDGRNMIMVL-----GPHKK 155
>gi|418473992|ref|ZP_13043525.1| translation initiation factor IF-3 [Streptomyces coelicoflavus
ZG0656]
gi|371545398|gb|EHN74025.1| translation initiation factor IF-3 [Streptomyces coelicoflavus
ZG0656]
Length = 202
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + ++D+ +ES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVQDLGFIESNPKQDGRNMIMVL-----GPHKK 155
>gi|260494365|ref|ZP_05814496.1| translation initiation factor IF-3 [Fusobacterium sp. 3_1_33]
gi|260198511|gb|EEW96027.1| translation initiation factor IF-3 [Fusobacterium sp. 3_1_33]
Length = 180
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI + R++ +G + +++ +AL LA S DLVE+ A PPVCKIMD+ K
Sbjct: 17 RINEKIRGKEFRIISFDGEQLGIMTAEQALNLASSQGYDLVEIAPSATPPVCKIMDYSKY 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KE++ + +I+ DL+ K + V + ++K +VK
Sbjct: 77 KYEQTRKLKEAKKNQKQVVI-----KEIKVTARIDSHDLETKLNQVTKFLEKENKVKVTL 131
Query: 200 LPVGKKEETEDLG 212
+ G+++ +LG
Sbjct: 132 VLFGREKMHANLG 144
>gi|237744050|ref|ZP_04574531.1| translation initiation factor IF-3 [Fusobacterium sp. 7_1]
gi|229431279|gb|EEO41491.1| translation initiation factor IF-3 [Fusobacterium sp. 7_1]
Length = 188
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 91/160 (56%), Gaps = 12/160 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI + R++ +G + +++ +AL LA S DLVE+ A PPVCKIMD+ K
Sbjct: 25 RINEKIRGKEFRIISFDGEQLGIMTAEQALNLASSQGYDLVEIAPSATPPVCKIMDYSKY 84
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KE++ + +I+ DL+ K + V + ++K +VK
Sbjct: 85 KYEQTRKLKEAKKNQKQVVI-----KEIKVTARIDSHDLETKLNQVTKFLEKENKVKVTL 139
Query: 200 LPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQA 239
+ G+++ +LG ++ L ++ E + V VE+K A
Sbjct: 140 VLFGREKMHANLG--VTTLDEIAEKFAEV---AEVEKKYA 174
>gi|149195434|ref|ZP_01872517.1| translation initiation factor IF-3 [Caminibacter mediatlanticus
TB-2]
gi|149134439|gb|EDM22932.1| translation initiation factor IF-3 [Caminibacter mediatlanticus
TB-2]
Length = 166
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 7/136 (5%)
Query: 92 VRLVLDEGH-KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDR 150
VRLV EG K+V H AL +A + DLV V ANPPV K+MD+ K KY++E K+K+
Sbjct: 20 VRLVDGEGEPKIVDSHMALEIAYNKGLDLVLVAPNANPPVAKVMDYGKYKYEQERKKKEA 79
Query: 151 AKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETED 210
K + I + KE++F+ KI+Q D+ K + ++KG VK G++ T +
Sbjct: 80 KKKQVKI-----EVKEIKFTSKIQQNDIDYKVKHAREFLEKGKHVKLRVFLRGRELATPE 134
Query: 211 LG-GYLSRLIDLIEDI 225
G ++++ D+++D+
Sbjct: 135 KGFEVINKVWDMLKDV 150
>gi|254302740|ref|ZP_04970098.1| initiation factor IF3 [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148322932|gb|EDK88182.1| initiation factor IF3 [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 182
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI + R++ +G + +++ +AL LA S DLVE+ A PPVCKIMD+ K
Sbjct: 19 RINEKIRGKEFRIISFDGEQLGIMTAEQALNLATSQGYDLVEIAPSATPPVCKIMDYSKY 78
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KE++ + +I+ DL+ K + V + ++K +VK
Sbjct: 79 KYEQTRKLKEAKKNQKQVVI-----KEIKVTARIDSHDLETKLNQVTKFLEKENKVKVTL 133
Query: 200 LPVGKKEETEDLG 212
+ G+++ +LG
Sbjct: 134 VLFGREKMHANLG 146
>gi|408491766|ref|YP_006868135.1| translation initiation factor InfC [Psychroflexus torquis ATCC
700755]
gi|408469041|gb|AFU69385.1| translation initiation factor InfC [Psychroflexus torquis ATCC
700755]
Length = 148
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+ S EALA+A + DLVE+ KA+PPVCK+MD+ K Y+++ +EK + + +
Sbjct: 5 IYSLKEALAMAEEQELDLVEISPKADPPVCKVMDYKKFLYEQKKREKVLKAKTTQVVV-- 62
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLID 220
KE+RF + D + K ++ + G ++K G+ +D G L RL
Sbjct: 63 ---KEIRFGPNTDDHDYEFKKKNAEKFLKDGAKLKAFVFFKGRSIVFKDKGQILLLRLAQ 119
Query: 221 LIEDISVVESGPHVERKQAYAIIRHV 246
+ED++ VE P +E K+ I+ V
Sbjct: 120 DLEDLAKVEQMPKLEGKRMIMILAPV 145
>gi|427734818|ref|YP_007054362.1| translation initiation factor 3 (bIF-3) [Rivularia sp. PCC 7116]
gi|427369859|gb|AFY53815.1| bacterial translation initiation factor 3 (bIF-3) [Rivularia sp.
PCC 7116]
Length = 177
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ +AL A + DLV V KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGAQLGIMTPQDALVRADEKELDLVLVSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE D ++ + KR + G +VK
Sbjct: 73 FKFEQEKKAREARKKQ-----HTADVKEVKMRYKIEDHDYNVRVNQAKRFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVE 235
+ G++ + DL L R+ +E ++ V+ P E
Sbjct: 128 VMFRGREIQHTDLAEILLKRMATDLEAVAEVQQYPKKE 165
>gi|72383053|ref|YP_292408.1| translation initiation factor IF-3 [Prochlorococcus marinus str.
NATL2A]
gi|123759845|sp|Q46IH3.1|IF3_PROMT RecName: Full=Translation initiation factor IF-3
gi|72002903|gb|AAZ58705.1| bacterial translation initiation factor 3 (bIF-3) [Prochlorococcus
marinus str. NATL2A]
Length = 202
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E P +N++I+ +R+V +G + V+SR +AL +A+ + DLV V KA PPVC+IM
Sbjct: 13 ERELPNINERISYSSLRVVDSDGTQLGVISREDALEVAKERELDLVLVSEKATPPVCRIM 72
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
++ K K+ E+++ ++ + + KEV+ KI+Q D Q++ R + G +
Sbjct: 73 NYGKFKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDK 127
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
VKC + G++ + L L R+ +E+ + V+ P E
Sbjct: 128 VKCTVIFRGREIQHTALAETLLKRMAKDLEEKAEVQQSPKRE 169
>gi|17232115|ref|NP_488663.1| translation initiation factor IF-3 [Nostoc sp. PCC 7120]
gi|17133760|dbj|BAB76322.1| translation initiation factor IF-3 [Nostoc sp. PCC 7120]
Length = 204
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 40 PQINERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGK 99
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 100 YKFEQEKKAREARKKQHT-----ADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 154
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ +E V+ P E + +I
Sbjct: 155 VMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLI 200
>gi|260589751|ref|ZP_05855664.1| translation initiation factor IF-3 [Blautia hansenii DSM 20583]
gi|260539991|gb|EEX20560.1| translation initiation factor IF-3 [Blautia hansenii DSM 20583]
Length = 164
Score = 72.4 bits (176), Expect = 5e-10, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ EG + ++S EA A DLV++ A PPVCKI+D+ K K
Sbjct: 2 INEQIRDKEVRLIGAEGEQLGIMSAREAQKHAAEAGLDLVKIAPTAKPPVCKIIDYGKYK 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y EL K++ K T+ + KEVR S IE+ DL K + ++ + KG +VK
Sbjct: 62 Y--ELARKEKEAKKKQKTI---EIKEVRLSPNIEENDLNTKVNNARKFLTKGNKVKVTLR 116
Query: 201 PVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
G++ + L + +++ D++VVE P VE
Sbjct: 117 FRGREMAHMQSSKCILEKFAEILSDVAVVEKAPKVE 152
>gi|392383479|ref|YP_005032676.1| translation initiation factor IF-3 [Azospirillum brasilense Sp245]
gi|356878444|emb|CCC99329.1| translation initiation factor IF-3 [Azospirillum brasilense Sp245]
Length = 144
Score = 72.4 bits (176), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
VVS +AL A DLVE+ +A PPVCKI+D+ K KY+ + K + K + I
Sbjct: 4 VVSLRDALLAAEDAGLDLVEIAPQAEPPVCKILDYGKYKYEAQKKAAEARKKQKII---- 59
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KE++ I+ D +K + +R +++G +VK G++ +DLG L R+ D
Sbjct: 60 -EVKEIKLRPNIDDNDYDVKMRSARRFLEEGDKVKVTMRFRGREMAHQDLGMNVLVRVRD 118
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+++++ VE P +E +Q ++
Sbjct: 119 ELDELAKVEQMPKLEGRQMVMVL 141
>gi|402771166|ref|YP_006590703.1| translation initiation factor IF-3 [Methylocystis sp. SC2]
gi|401773186|emb|CCJ06052.1| Translation initiation factor IF-3 [Methylocystis sp. SC2]
Length = 175
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR+N +I A+ V+L+ EG H VV +AL +A + DLVE+ + PPVCKI+
Sbjct: 8 QKEGPRINREIRAREVQLIDSEGKNHGVVQLPDALGIAEAAGLDLVEIAPNSTPPVCKIL 67
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ + ++ E K+ A+ K + + KE++ I+ D +K V+R ++G +
Sbjct: 68 DYGRFRFA-EQKKAAEARKKQKVV----EVKEIKLRPGIDDHDYGVKMKAVRRFFEEGDK 122
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +D+G LSR+ ++ VE P +E +Q ++
Sbjct: 123 VKVTLRFRGREIAHQDIGYRLLSRVKAETATLAKVELEPSMEGRQMVMVL 172
>gi|375290818|ref|YP_005125358.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
241]
gi|375293013|ref|YP_005127552.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
INCA 402]
gi|376242751|ref|YP_005133603.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
CDCE 8392]
gi|376245649|ref|YP_005135888.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
HC01]
gi|376248442|ref|YP_005140386.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
HC04]
gi|376251232|ref|YP_005138113.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
HC03]
gi|376254239|ref|YP_005142698.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
PW8]
gi|376257050|ref|YP_005144941.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
VA01]
gi|376287666|ref|YP_005160232.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
BH8]
gi|376290360|ref|YP_005162607.1| translation initiation factor IF-3 [Corynebacterium diphtheriae C7
(beta)]
gi|376293178|ref|YP_005164852.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
HC02]
gi|419860732|ref|ZP_14383373.1| translation initiation factor IF-3 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|371580489|gb|AEX44156.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
241]
gi|371582684|gb|AEX46350.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
INCA 402]
gi|371585000|gb|AEX48665.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
BH8]
gi|372103756|gb|AEX67353.1| translation initiation factor IF-3 [Corynebacterium diphtheriae C7
(beta)]
gi|372105993|gb|AEX72055.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
CDCE 8392]
gi|372108279|gb|AEX74340.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
HC01]
gi|372110501|gb|AEX76561.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
HC02]
gi|372112736|gb|AEX78795.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
HC03]
gi|372115010|gb|AEX81068.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
HC04]
gi|372117323|gb|AEX69793.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
PW8]
gi|372119567|gb|AEX83301.1| translation initiation factor IF-3 [Corynebacterium diphtheriae
VA01]
gi|387983126|gb|EIK56625.1| translation initiation factor IF-3 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 148
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +A LA DLVEV A PPVCKIMD+ K KY++ K ++ K + +
Sbjct: 3 IVRIDDARKLAYEADLDLVEVAPNAKPPVCKIMDYGKFKYEQAQKAREARKNQQQTVV-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE +F KI+ D + K + V R ++KG +VK + G+++ +LG L RL
Sbjct: 61 ---KEQKFRPKIDDHDYETKKNNVIRFLEKGSKVKVTIMFRGREQSRPELGFRLLERLAG 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ + +VES P + + + FGP++KG
Sbjct: 118 DVAEYGIVESKPKQDGRNMTMV-----FGPARKG 146
>gi|374263243|ref|ZP_09621795.1| translation initiation factor IF-3 [Legionella drancourtii LLAP12]
gi|363536505|gb|EHL29947.1| translation initiation factor IF-3 [Legionella drancourtii LLAP12]
Length = 178
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 76 KETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
+E+ R+N++IN VRL+ +G++ +VS EAL A DLVE+ A PPVC+I
Sbjct: 7 RESDRARINEQINVPEVRLIDVDGNQAGIVSTREALRTAEEGGLDLVEISPTAKPPVCRI 66
Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
MD Y K L E + +A++ K+ KE++F E D Q+K + R ++ G
Sbjct: 67 MD-----YGKFLFELSKKQAEARKKQKQIQVKELKFRPTTEDGDYQVKLRNLIRFLNHGD 121
Query: 194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+VK G++ +DLG L R+ D++VVE E +Q ++
Sbjct: 122 KVKITLRFRGREMAHQDLGMKILERIQQDTADVAVVEQHAKREGRQLLMVL 172
>gi|381162388|ref|ZP_09871618.1| translation initiation factor IF-3 [Saccharomonospora azurea
NA-128]
gi|379254293|gb|EHY88219.1| translation initiation factor IF-3 [Saccharomonospora azurea
NA-128]
Length = 204
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S R+N++I VRLV G +V V +AL LA+ DLVEV +A PPV K+MD
Sbjct: 20 SSETRINERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVAKLMD 79
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K ++ ++ +T+ KE + KI+ D K V R ++ G +V
Sbjct: 80 YGKFKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDPHDYATKKGHVSRFLEAGNKV 134
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L RL D + ++ VES P
Sbjct: 135 KVTIMFRGREQSRPELGFRLLQRLADDVSELGFVESKP 172
>gi|162147244|ref|YP_001601705.1| translation initiation factor IF-3 [Gluconacetobacter
diazotrophicus PAl 5]
gi|209544294|ref|YP_002276523.1| translation initiation factor IF-3 [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785821|emb|CAP55392.1| Translation initiation factor IF-3 [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531971|gb|ACI51908.1| translation initiation factor IF-3 [Gluconacetobacter
diazotrophicus PAl 5]
Length = 173
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+N++I VRL+ +G V+ +AL A ++ DL+E+ A PPV KI+D+
Sbjct: 8 EGPRVNEEIRVPQVRLIDADGEMLGVMPTRDALMRAYAVGLDLLEISPNAEPPVAKILDY 67
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ K+++ A+ K + + KEV+ I++ D Q+K +K + +G +VK
Sbjct: 68 GKFKYEQQ-KKRNEARKKQKVI----EIKEVKVRPNIDENDYQVKMRAMKSFIGEGDKVK 122
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ +++ + VE P +E +Q ++
Sbjct: 123 VTLRFRGREMAHQDLGIKVLERIRTEMDEQAKVEQMPKLENRQMIMVL 170
>gi|347531903|ref|YP_004838666.1| translation initiation factor IF-3 [Roseburia hominis A2-183]
gi|345502051|gb|AEN96734.1| translation initiation factor IF-3 [Roseburia hominis A2-183]
Length = 165
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 22/163 (13%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + +RL+ + G + ++S EA+ LA + DLV++ A PPVCKI+D+ K +
Sbjct: 2 INEQIRDKEIRLIGENGEQLGIMSAREAMKLAEEAELDLVKIAPTAKPPVCKIIDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC--- 197
Y+ KEK+ A+ K + + KE+R S I+ DL K + K+ + KG +VK
Sbjct: 62 YELARKEKE-ARKKQKVV----EIKEIRLSPNIDSNDLNTKMNAAKKFLSKGDKVKITLR 116
Query: 198 -----MALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVE 235
MA K +D L +I+VVE P VE
Sbjct: 117 FRGREMAHMNASKHILDDFAASLG-------EIAVVEKAPKVE 152
>gi|319902629|ref|YP_004162357.1| bacterial translation initiation factor 3 (bIF-3) [Bacteroides
helcogenes P 36-108]
gi|319417660|gb|ADV44771.1| bacterial translation initiation factor 3 (bIF-3) [Bacteroides
helcogenes P 36-108]
Length = 204
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 18/205 (8%)
Query: 82 RLNDKINAQFVRLVLDEGH-KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N++I A+ VR+V DE KV +AL LA + DLVE+ A+PPVC+I+D+ K
Sbjct: 11 RINEQIRAKEVRIVGDEVEAKVYPIAQALRLAEEHEADLVEISPNADPPVCRIIDYSKFL 70
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ + ++K++ KAK K + KE+RF + + D K K ++ G +VK
Sbjct: 71 YQLKKRQKEQ-KAKQ----VKVNVKEIRFGPQTDDHDYNFKLKHAKGFLEDGDKVKAYVF 125
Query: 201 PVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGL 256
G+ KE+ E L L R + +ED + V+ P +E K+ ++ P K
Sbjct: 126 FKGRSILFKEQGEVL---LLRFANDLEDYAKVDQMPILEGKRM-----TIQLSPKKGAAP 177
Query: 257 KKLKAVGDTSGVSKAATPSSTIERS 281
KK A+ SK + + E+
Sbjct: 178 KKPVAIKPAENASKVVSTENEDEKE 202
>gi|347752938|ref|YP_004860503.1| translation initiation factor IF-3 [Bacillus coagulans 36D1]
gi|347585456|gb|AEP01723.1| translation initiation factor IF-3 [Bacillus coagulans 36D1]
Length = 213
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + V SR+EAL +A DLV V A PPV +IMD+ K
Sbjct: 48 VNEGIRAREVRLIGQNGEQMGVKSRNEALEIAARANLDLVLVAPNAKPPVARIMDYG--K 105
Query: 141 YQKELKEKDR-AKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+ E+++KDR A+ K I + KEVR S IE+ D K + ++KG +VK
Sbjct: 106 YRFEMQKKDREARKKQKII----NVKEVRLSPTIEEHDFNTKLRNAIKFLEKGDKVKASI 161
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L R + +++ VES P ++ + + ++
Sbjct: 162 RFKGRAITHKDIGQRVLDRFAEACAEVATVESKPKMDGRSMFLVL 206
>gi|239625927|ref|ZP_04668958.1| translation initiation factor IF-3 [Clostridiales bacterium
1_7_47_FAA]
gi|239520157|gb|EEQ60023.1| translation initiation factor IF-3 [Clostridiales bacterium
1_7_47FAA]
Length = 164
Score = 72.4 bits (176), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ ++G + +V +AL +A+ + DLV++ A PPVCKI+D+ K +
Sbjct: 2 INEQIRDKEVRLIGEDGEQLGIVQFKDALKMAQDAELDLVKIAPTAKPPVCKIIDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ KEK+ K + I + KEVR S I+ DL K ++ ++KG +VK
Sbjct: 62 YELARKEKEARKKQKVIEI-----KEVRLSPNIDTNDLNTKVGAARKFLEKGDKVKVTLR 116
Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVE 235
G++ Y L + ++DI+V++ VE
Sbjct: 117 FRGREMAHMYKSKYILDDFAESLKDIAVIDKPSKVE 152
>gi|227890561|ref|ZP_04008366.1| protein translation initiation factor 3 [Lactobacillus salivarius
ATCC 11741]
gi|301300334|ref|ZP_07206539.1| translation initiation factor IF-3 [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|385840202|ref|YP_005863526.1| translation initiation factor IF-3 [Lactobacillus salivarius CECT
5713]
gi|227867499|gb|EEJ74920.1| protein translation initiation factor 3 [Lactobacillus salivarius
ATCC 11741]
gi|300214323|gb|ADJ78739.1| Translation initiation factor IF-3 [Lactobacillus salivarius CECT
5713]
gi|300852070|gb|EFK79749.1| translation initiation factor IF-3 [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 189
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ +RL+ D G + V ++ EAL +A DLV V KA PPV KIMD+ K
Sbjct: 25 VNEGIRARELRLISDNGDQLGVKTKQEALKMAEDANLDLVLVAPKAKPPVAKIMDYG--K 82
Query: 141 YQKELKEKDR-AKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+ EL++K R A+ K + + KEVR S I+ D K ++ + KG +VK
Sbjct: 83 YRFELQKKQREARKKQKVV----NIKEVRLSPTIDTNDFNTKMKNARKFLSKGDKVKVSI 138
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L+R + ED++ VES ++ + + ++
Sbjct: 139 RFKGRAITHKDIGRDVLNRFAEATEDVATVESKAKMDGRSMFLML 183
>gi|421146145|ref|ZP_15605905.1| translation initiation factor IF-3, partial [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
gi|395487455|gb|EJG08450.1| translation initiation factor IF-3, partial [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
Length = 181
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+KI + R++ +G + +++ +AL LA S DLVE+ A PPVCKIMD+ K
Sbjct: 18 RINEKIRGKEFRIISFDGEQLGIMTAEQALNLASSQGYDLVEIAPSATPPVCKIMDYSKY 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ K K+ K + + + KE++ + +I+ DL+ K + V + ++K +VK
Sbjct: 78 KYEQTRKLKEAKKNQKQVVI-----KEIKVTARIDSHDLETKLNQVTKFLEKENKVKVTL 132
Query: 200 LPVGKKEETEDLG 212
+ G+++ +LG
Sbjct: 133 VLFGREKMHANLG 145
>gi|75908259|ref|YP_322555.1| translation initiation factor IF-3 [Anabaena variabilis ATCC 29413]
gi|20138475|sp|Q8YNE3.1|IF3_ANASP RecName: Full=Translation initiation factor IF-3
gi|123758829|sp|Q3MBH6.1|IF3_ANAVT RecName: Full=Translation initiation factor IF-3
gi|75701984|gb|ABA21660.1| bacterial translation initiation factor 3 (bIF-3) [Anabaena
variabilis ATCC 29413]
Length = 177
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQH-----TADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ +E V+ P E + +I
Sbjct: 128 VMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLI 173
>gi|312113313|ref|YP_004010909.1| translation initiation factor IF-3 [Rhodomicrobium vannielii ATCC
17100]
gi|311218442|gb|ADP69810.1| translation initiation factor IF-3 [Rhodomicrobium vannielii ATCC
17100]
Length = 173
Score = 72.4 bits (176), Expect = 5e-10, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 12/169 (7%)
Query: 80 GPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+N+ I A+ V+L+ + G H VS+ +ALA A+ DLVE+ PV KIMDF
Sbjct: 9 GPRINEGIIARDVQLIDEAGENHGTVSKRDALAKAQEAGLDLVEIAVNGEVPVTKIMDFG 68
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K K+Q + K + K + + + KE++ I+ D +K ++K+ ++G +VK
Sbjct: 69 KYKFQAQKKAAEARKKQKTV-----EVKEIKLRPNIDTNDYNVKMRSIKKFFEEGDKVKV 123
Query: 198 MALPVGKKEETEDLGGYLSRLIDLIED---ISVVESGPHVERKQAYAII 243
G++ +D+G L L+ + E+ I+ VE P +E +Q ++
Sbjct: 124 TLRFRGREMAHQDIGMQL--LLQVKEETTAIAKVELEPRLEGRQMIMVL 170
>gi|221310829|ref|ZP_03592676.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315154|ref|ZP_03596959.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320072|ref|ZP_03601366.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324354|ref|ZP_03605648.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|296331561|ref|ZP_06874030.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675480|ref|YP_003867152.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|308174583|ref|YP_003921288.1| initiation factor IF-3 [Bacillus amyloliquefaciens DSM 7]
gi|321312421|ref|YP_004204708.1| translation initiation factor IF-3 [Bacillus subtilis BSn5]
gi|384160418|ref|YP_005542491.1| translation initiation factor IF-3 [Bacillus amyloliquefaciens
TA208]
gi|384165355|ref|YP_005546734.1| translation initiation factor IF-3 [Bacillus amyloliquefaciens LL3]
gi|384169498|ref|YP_005550876.1| translation initiation factor IF-3 [Bacillus amyloliquefaciens XH7]
gi|384176476|ref|YP_005557861.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|386759453|ref|YP_006232669.1| translation initiation factor IF-3 [Bacillus sp. JS]
gi|402777043|ref|YP_006630987.1| initiation factor IF-3 [Bacillus subtilis QB928]
gi|418031927|ref|ZP_12670410.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|428280364|ref|YP_005562099.1| translation initiation factor IF-3 [Bacillus subtilis subsp. natto
BEST195]
gi|430758652|ref|YP_007208608.1| translation initiation factor InfC [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|443632220|ref|ZP_21116400.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|449095332|ref|YP_007427823.1| translation initiation factor IF-3 [Bacillus subtilis XF-1]
gi|452915316|ref|ZP_21963942.1| translation initiation factor IF-3 [Bacillus subtilis MB73/2]
gi|291485321|dbj|BAI86396.1| translation initiation factor IF-3 [Bacillus subtilis subsp. natto
BEST195]
gi|296151156|gb|EFG92036.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413724|gb|ADM38843.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|307607447|emb|CBI43818.1| initiation factor IF-3 [Bacillus amyloliquefaciens DSM 7]
gi|320018695|gb|ADV93681.1| translation initiation factor IF-3 [Bacillus subtilis BSn5]
gi|328554506|gb|AEB24998.1| translation initiation factor IF-3 [Bacillus amyloliquefaciens
TA208]
gi|328912910|gb|AEB64506.1| Translation initiation factor IF-3 [Bacillus amyloliquefaciens LL3]
gi|341828777|gb|AEK90028.1| translation initiation factor IF-3 [Bacillus amyloliquefaciens XH7]
gi|349595700|gb|AEP91887.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|351470790|gb|EHA30911.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|384932735|gb|AFI29413.1| translation initiation factor IF-3 [Bacillus sp. JS]
gi|402482223|gb|AFQ58732.1| Initiation factor IF-3 [Bacillus subtilis QB928]
gi|407960896|dbj|BAM54136.1| translation initiation factor IF-3 [Bacillus subtilis BEST7613]
gi|407965726|dbj|BAM58965.1| translation initiation factor IF-3 [Bacillus subtilis BEST7003]
gi|430023172|gb|AGA23778.1| Translation initiation factor InfC [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|443348335|gb|ELS62392.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|449029247|gb|AGE64486.1| translation initiation factor IF-3 [Bacillus subtilis XF-1]
gi|452115664|gb|EME06060.1| translation initiation factor IF-3 [Bacillus subtilis MB73/2]
Length = 167
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + SR EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 2 VNEGIRAREVRLIGQNGDQLGIKSRQEALEIAGRANLDLVLVAANAKPPVCRIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I L KEVR S I++ D K + ++KG +VK
Sbjct: 62 FEQQKKEKEARKNQKIINL-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + +++ VE+ P ++ + + ++
Sbjct: 117 FKGRAITHKEIGQRVLDRFSEACAEVATVETKPKMDGRSMFLML 160
>gi|440730357|ref|ZP_20910447.1| translation initiation factor IF-3 [Xanthomonas translucens
DAR61454]
gi|440379011|gb|ELQ15617.1| translation initiation factor IF-3 [Xanthomonas translucens
DAR61454]
Length = 136
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 8/137 (5%)
Query: 109 LALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVR 168
+ALA DLVE+ +A+PPVCKIMDF K K++++ K+ + AK K+ K+ + KE++
Sbjct: 1 MALAEEDGLDLVEIQPQADPPVCKIMDFGKFKFEQQ-KKANEAKKKT----KQVEIKEIK 55
Query: 169 FSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI--DLIEDIS 226
F ++ D Q+K ++R +++G +VK G++ ++LG ++ I DL EDI
Sbjct: 56 FRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGRQMASRIEADLGEDI- 114
Query: 227 VVESGPHVERKQAYAII 243
V+ES P +E +Q +I
Sbjct: 115 VIESRPRLEGRQMVMMI 131
>gi|255324637|ref|ZP_05365754.1| translation initiation factor IF-3 [Corynebacterium
tuberculostearicum SK141]
gi|255298543|gb|EET77843.1| translation initiation factor IF-3 [Corynebacterium
tuberculostearicum SK141]
Length = 156
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +A LA DLVEV KA PPV KIMD+ K KY++ K ++ K + +
Sbjct: 11 IVRTDDARKLAYEADLDLVEVAPKAKPPVAKIMDYGKFKYEQAQKAREARKNQQQTVV-- 68
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE +F KI+ D + K V R ++KG +VK + G+++ +LG L RL D
Sbjct: 69 ---KEQKFRPKIDDHDYETKKGNVVRFLEKGSKVKVTIMFRGREQSRPELGFRLLERLAD 125
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ ++ VVES P + + ++ GP +KG
Sbjct: 126 DVAEVGVVESRPKQDGRNMTMVL-----GPVRKG 154
>gi|190571397|ref|YP_001975755.1| translation initiation factor IF-3 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018796|ref|ZP_03334604.1| translation initiation factor IF-3 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357669|emb|CAQ55113.1| translation initiation factor IF-3 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995747|gb|EEB56387.1| translation initiation factor IF-3 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 172
Score = 72.4 bits (176), Expect = 5e-10, Method: Composition-based stats.
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 12/172 (6%)
Query: 70 QQKKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKAN 127
Q KK+ K R+N+ I A+ VRLV G V V +AL +A+S+ DLVE+ +
Sbjct: 2 QVKKNNKN----RINELITAKEVRLVDHSGEMVGIVPIEKALEVAQSVNLDLVEIAPDST 57
Query: 128 PPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKR 187
PPVCKI+D+ K+KY + K + K + +T+ KE++ I D + K +
Sbjct: 58 PPVCKILDYSKQKYDIKKKASEAKKKQKTLTI-----KEIKLGPNIGDHDYETKLRQARD 112
Query: 188 LMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
+ G+R+K G++ ++G L RLI EDI+ VE P E Q
Sbjct: 113 FLVHGHRIKVTMRFRGRELVNTEVGLKKLERLIRDAEDIAKVELAPKREGNQ 164
>gi|385799724|ref|YP_005836128.1| translation initiation factor 3 (bIF-3) [Halanaerobium praevalens
DSM 2228]
gi|309389088|gb|ADO76968.1| bacterial translation initiation factor 3 (bIF-3) [Halanaerobium
praevalens DSM 2228]
Length = 183
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 8/157 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I ++ VRL+ EG ++ S +AL A DLVEV +ANPPVC+IMD+ K
Sbjct: 18 RVNDRIRSRKVRLIDQEGEQIGIKSLDDALDRAAEYGMDLVEVAPQANPPVCRIMDYGKY 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY++ KEK+ K ++ + + KEV+ KIE D +K +R ++ +VK
Sbjct: 78 KYEQAKKEKEAKKNQNVMNV-----KEVQMGVKIEDHDFNVKLKQARRFLNNKDKVKVRI 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ ++LG + RLI+ +DI VES P +E
Sbjct: 133 RFRGREMMHKELGYDLMDRLIEQTKDIGKVESKPKME 169
>gi|407278475|ref|ZP_11106945.1| translation initiation factor IF-3, partial [Rhodococcus sp. P14]
Length = 216
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +AL LA DLVEV A PPVCKIMD+ K
Sbjct: 23 RINERIRVPEVRLVGPGGEQVGIVRVEDALRLAYEADLDLVEVAPDARPPVCKIMDYGKF 82
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K V R ++ G +VK
Sbjct: 83 KYEAAQKARESRKNQQLTVI-----KEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 137
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL + D+ +E+ P
Sbjct: 138 MFRGREQSRPELGFRLLQRLGADVADLGFIETAP 171
>gi|406937003|gb|EKD70590.1| hypothetical protein ACD_46C00484G0008 [uncultured bacterium]
Length = 179
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
PR+N++I A VRL+ EG++ VVS EA ++ + DLVE+ A PPVC+IM+F K
Sbjct: 14 PRINEEIRAPEVRLIDAEGNQLGVVSVREARHMSEEAELDLVEISPDAKPPVCRIMNFGK 73
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
YQ+ ++ K + + L KEV+F E+ D Q+K + R + + K
Sbjct: 74 FTYQQSKRKAAAKKKQKQVHL-----KEVKFRPATEEADYQVKLRNIIRFLASADKAKVT 128
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +LG + R+I + + VVE P +E +Q +I
Sbjct: 129 LRFRGREMTHPELGIKLMERIIVDLATVGVVEQRPKMEGRQMVMVI 174
>gi|281417896|ref|ZP_06248916.1| translation initiation factor IF-3 [Clostridium thermocellum JW20]
gi|385778386|ref|YP_005687551.1| translation initiation factor IF-3 [Clostridium thermocellum DSM
1313]
gi|419721306|ref|ZP_14248471.1| Translation initiation factor IF-3 [Clostridium thermocellum AD2]
gi|419724382|ref|ZP_14251448.1| Translation initiation factor IF-3 [Clostridium thermocellum YS]
gi|281409298|gb|EFB39556.1| translation initiation factor IF-3 [Clostridium thermocellum JW20]
gi|316940066|gb|ADU74100.1| translation initiation factor IF-3 [Clostridium thermocellum DSM
1313]
gi|380772204|gb|EIC06058.1| Translation initiation factor IF-3 [Clostridium thermocellum YS]
gi|380782686|gb|EIC12319.1| Translation initiation factor IF-3 [Clostridium thermocellum AD2]
Length = 173
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ +G ++S EA +A + DLV++ +A PPVC+IMD+ K
Sbjct: 11 INEQIRDKEVRLIDTDGTMLGIMSSKEAQKIANAKNLDLVKIAPQAVPPVCRIMDYGKYM 70
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ KEK+ K + I + KEVR S IE+ D K R + G +VK
Sbjct: 71 FELAKKEKEARKNQKVI-----NVKEVRLSASIEEHDFNFKLKNALRFLKDGDKVKVSVK 125
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ LG L + + ++D++VVE P +E + + I+
Sbjct: 126 FRGREMNYTSLGQQVLEKFAEAVKDVAVVEKKPKLEGRNMFMIL 169
>gi|157164257|ref|YP_001465956.1| translation initiation factor IF-3 [Campylobacter concisus 13826]
gi|416113697|ref|ZP_11593448.1| Translation initiation factor 3 [Campylobacter concisus UNSWCD]
gi|384578481|gb|EIF07746.1| Translation initiation factor 3 [Campylobacter concisus UNSWCD]
Length = 165
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VR V D+G + V+SR EAL ++ L DLV + A PPVCKIMD+ K +
Sbjct: 2 LNEDIRAREVRCVGDDGTAYGVISRDEALEISNKLGLDLVLIAPDAKPPVCKIMDYGKFR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K+K+ K + I + KE++ S KI Q D+ K + G VK
Sbjct: 62 YQQEKKQKEAKKKQKTIEI-----KEIKLSVKIAQNDINYKVKHASEFLQDGKHVKFRVF 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ T + G L ++ ++I+D + + P +E
Sbjct: 117 LKGREMSTPEAGVAMLEKVWEMIKDEADRDKEPIIE 152
>gi|455649654|gb|EMF28450.1| translation initiation factor IF-3 [Streptomyces gancidicus BKS
13-15]
Length = 199
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RLV G +V V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++
Sbjct: 1 MRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKARE 60
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
K ++ + KE++ KI+ D K V R + +G +VK + G+++
Sbjct: 61 ARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRP 115
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL + + D+ VES P + + ++ GP KK
Sbjct: 116 ELGYRLLQRLAEDVADLGFVESNPKQDGRNMIMVL-----GPHKK 155
>gi|452955315|gb|EME60714.1| translation initiation factor IF-3 [Rhodococcus ruber BKS 20-38]
Length = 219
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +AL LA DLVEV A PPVCKIMD+ K
Sbjct: 23 RINERIRVPEVRLVGPGGEQVGIVRVEDALRLAYEADLDLVEVAPDARPPVCKIMDYGKF 82
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K V R ++ G +VK
Sbjct: 83 KYEAAQKARESRKNQQLTVI-----KEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 137
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
+ G+++ +LG L RL + D+ +E+ P
Sbjct: 138 MFRGREQSRPELGFRLLQRLGADVADLGFIETAP 171
>gi|170760643|ref|YP_001788456.1| translation initiation factor IF-3 [Clostridium botulinum A3 str.
Loch Maree]
gi|169407632|gb|ACA56043.1| translation initiation factor IF-3 [Clostridium botulinum A3 str.
Loch Maree]
Length = 184
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM++ K
Sbjct: 21 MNEQIREKEVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNYGKFL 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I + KEVR S IE D+++KA+ ++ ++ G +VK
Sbjct: 81 YEQTKKDKEAKKNQKVI-----NIKEVRLSPTIEAHDIEIKANNARKFLNAGNKVKVTVR 135
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L+ + +E+ +E P +E + I+
Sbjct: 136 FRGREADYSFKGNKILNSFYEKVEEAGAMEKAPKLEGRNMIMIL 179
>gi|291519542|emb|CBK74763.1| bacterial translation initiation factor 3 (bIF-3) [Butyrivibrio
fibrisolvens 16/4]
Length = 165
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR++ +G + ++S EA LA DLV++ KANPPVCKI+D+ K +
Sbjct: 2 INEQIRDKEVRVISSDGEQLGIMSAKEAQKLADDEGLDLVKISPKANPPVCKIVDYGKYR 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ +EK+ AK K + + KE+R S I+ D+ K + K+ + KG +VK
Sbjct: 62 YEQARREKE-AKKKQHVV----EVKEIRMSPNIDANDMNTKVNAAKKFISKGDKVKVTLR 116
Query: 201 PVGKK-EETEDLGGYLSRLIDLIEDISVVESGPHVE 235
G++ + L + + D++VVE P +E
Sbjct: 117 FRGREMAHMQSSKHILDDFAEALADVAVVEKAPKIE 152
>gi|227501816|ref|ZP_03931865.1| translation initiation factor IF-3 [Corynebacterium accolens ATCC
49725]
gi|306835994|ref|ZP_07468986.1| translation initiation factor IF3 [Corynebacterium accolens ATCC
49726]
gi|227077841|gb|EEI15804.1| translation initiation factor IF-3 [Corynebacterium accolens ATCC
49725]
gi|304568160|gb|EFM43733.1| translation initiation factor IF3 [Corynebacterium accolens ATCC
49726]
Length = 148
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +A LA DLVEV KA PPV KIMD+ K KY++ K ++ K + +
Sbjct: 3 IVRTDDARKLAYEADLDLVEVAPKAKPPVAKIMDYGKFKYEQAQKARESRKNQQQTVV-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE +F KI+ D + K V R ++KG +VK + G+++ +LG L RL D
Sbjct: 61 ---KEQKFRPKIDDHDYETKKSNVVRFLEKGSKVKVTIMFRGREQSRPELGFRLLERLAD 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ ++ VVES P + + ++ GP +KG
Sbjct: 118 DVAEVGVVESRPKQDGRNMTMVL-----GPVRKG 146
>gi|26989189|ref|NP_744614.1| translation initiation factor IF-3 [Pseudomonas putida KT2440]
gi|325276811|ref|ZP_08142512.1| translation initiation factor IF-3 [Pseudomonas sp. TJI-51]
gi|421521785|ref|ZP_15968436.1| translation initiation factor IF-3 [Pseudomonas putida LS46]
gi|24984028|gb|AAN68078.1|AE016439_13 translation initiation factor IF-3 [Pseudomonas putida KT2440]
gi|324098049|gb|EGB96194.1| translation initiation factor IF-3 [Pseudomonas sp. TJI-51]
gi|402754393|gb|EJX14876.1| translation initiation factor IF-3 [Pseudomonas putida LS46]
Length = 177
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 13/185 (7%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
+ D++ +N+ I+A+ VRL+ +G +V VS EAL +A + DLVE+ A PP
Sbjct: 2 RNDKRAVPKAPINENISAREVRLIGADGEQVGIVSIDEALRIADEAKLDLVEISADAVPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VCK+MD+ K ++K+ + + K + I + KE++F E D Q+K + R +
Sbjct: 62 VCKVMDYGKHLFEKKKQANEAKKNQKQIQI-----KEIKFRPGTEDGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAIIRHVKF 248
G + K G++ ++LG L + ++ + + VE P +E +Q +I
Sbjct: 117 TDGDKAKISLRFRGREMAHQELGMELLKRVEADLAEYGTVEQHPKMEGRQLMMVI----- 171
Query: 249 GPSKK 253
P KK
Sbjct: 172 APKKK 176
>gi|330503838|ref|YP_004380707.1| translation initiation factor IF-3 [Pseudomonas mendocina NK-01]
gi|328918124|gb|AEB58955.1| translation initiation factor IF-3 [Pseudomonas mendocina NK-01]
Length = 177
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ +N+ I A+ VRL+ +G ++ VS EAL +A + DLVE+ A PP
Sbjct: 2 RQDKRAAPKAPINENITAREVRLIGADGEQIGIVSIDEALRVAEEAKLDLVEISADAVPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + + KE++F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQAAIAKKNQHQQQIKEIKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
+ G + K G++ ++LG L + + DLIE + VE P +E +Q +I
Sbjct: 117 EDGDKAKVSLRFRGREMAHQELGMELLKRVEQDLIE-LGTVEQHPKLEGRQLMMVI 171
>gi|428220904|ref|YP_007105074.1| translation initiation factor IF-3 [Synechococcus sp. PCC 7502]
gi|427994244|gb|AFY72939.1| translation initiation factor IF-3 [Synechococcus sp. PCC 7502]
Length = 173
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +N++I VR++ +G + +++ EA LA + DLV V KA+PPVC+IMD+ K
Sbjct: 9 PTINERIRFPKVRVIDADGGQLGIMTPREASKLAEEKELDLVLVSDKADPPVCRIMDYGK 68
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + + D KEV+ KIE+ D Q++ + +R + +G +VK
Sbjct: 69 FKFEQEKKAREARKKQHTV-----DVKEVKMRYKIEEHDYQVRINHAERFLKEGDKVKAT 123
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + DL L+R+ + I+ ++ P E
Sbjct: 124 VMFKGREIQHADLAEELLNRMAVDLGPIAEIQQAPKRE 161
>gi|83748298|ref|ZP_00945323.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Ralstonia
solanacearum UW551]
gi|207742947|ref|YP_002259339.1| translation initiation factor if-3 protein [Ralstonia solanacearum
IPO1609]
gi|83725030|gb|EAP72183.1| Bacterial Protein Translation Initiation Factor 3 (IF-3) [Ralstonia
solanacearum UW551]
gi|206594342|emb|CAQ61269.1| translation initiation factor if-3 protein [Ralstonia solanacearum
IPO1609]
Length = 183
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A +RL EG + +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 18 RINREITAPEIRLTGVEGEQLGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ AK K + KEV+F + D ++K +KR +D+G R K
Sbjct: 78 KYQ-EQKKAHEAKLKQKVI----QVKEVKFRPGTDDGDYEVKLRNLKRFLDEGDRAKITL 132
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +++G L RL +E+ + VE P +E +Q ++
Sbjct: 133 RFRGREMAHQEIGARMLERLKVDLEEHAQVEQMPKMEGRQMVMML 177
>gi|125973740|ref|YP_001037650.1| translation initiation factor 3 [Clostridium thermocellum ATCC
27405]
gi|256005542|ref|ZP_05430503.1| translation initiation factor IF-3 [Clostridium thermocellum DSM
2360]
gi|125713965|gb|ABN52457.1| translation initiation factor IF-3 [Clostridium thermocellum ATCC
27405]
gi|255990522|gb|EEU00643.1| translation initiation factor IF-3 [Clostridium thermocellum DSM
2360]
Length = 164
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRL+ +G ++S EA +A + DLV++ +A PPVC+IMD+ K
Sbjct: 2 INEQIRDKEVRLIDTDGTMLGIMSSKEAQKIANAKNLDLVKIAPQAVPPVCRIMDYGKYM 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ KEK+ K + I + KEVR S IE+ D K R + G +VK
Sbjct: 62 FELAKKEKEARKNQKVI-----NVKEVRLSASIEEHDFNFKLKNALRFLKDGDKVKVSVK 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ LG L + + ++D++VVE P +E + + I+
Sbjct: 117 FRGREMNYTSLGQQVLEKFAEAVKDVAVVEKKPKLEGRNMFMIL 160
>gi|58584730|ref|YP_198303.1| translation initiation factor 3, IF-3 [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58419046|gb|AAW71061.1| Translation initiation factor 3, IF-3 [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 169
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N+ I A+ VRLV G V VS AL A+++ DLVEV + PPVCKI+D+ K+
Sbjct: 7 RINEFITAKEVRLVDHNGEMVGVVSIGRALTFAQNVGLDLVEVAPDSIPPVCKILDYSKQ 66
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY + K + K + +T+ KE++ I D + K + + G+++K
Sbjct: 67 KYDAKKKASEAKKKQKTLTI-----KEIKLGPNIGDHDYETKLRHARDFLTHGHKIKVTM 121
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAY 240
G++ ++G L RLI EDI+ +ES P E Q +
Sbjct: 122 KFKGRELINTEVGLEKLERLIRDTEDIAKIESAPKREGNQYF 163
>gi|451812811|ref|YP_007449264.1| translation initiation factor IF-3 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|451778780|gb|AGF49660.1| translation initiation factor IF-3 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 178
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I VRL+ G + +V EAL L+ Q DLVE+ A P VC++MD+ K
Sbjct: 8 RINGEIRIPEVRLIGINGEQLGIVKISEALRLSEQHQVDLVEIAPNAVPSVCRLMDYGKF 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY KE K + AKAK + KEV+F ++ D +K ++R +D G + K
Sbjct: 68 KY-KEQKRQAEAKAKQKVI----QVKEVKFRPSTDEGDYNVKLKNLRRFLDDGDKAKVTL 122
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + D ++VES P +E +Q ++
Sbjct: 123 RFRGREMAHQELGMRVLERIRKDLSDSAIVESMPRLEGRQMVMML 167
>gi|427729940|ref|YP_007076177.1| translation initiation factor IF-3 [Nostoc sp. PCC 7524]
gi|427365859|gb|AFY48580.1| translation initiation factor IF-3 [Nostoc sp. PCC 7524]
Length = 177
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ EAL LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGSQLGIMAPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQH-----TADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ +E V+ P E + +I
Sbjct: 128 VMFRGREIQHSDLAETLLKRMATDLEPFGEVQQAPKKEGRNMMMLI 173
>gi|418293354|ref|ZP_12905263.1| translation initiation factor IF-3 [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
gi|379064746|gb|EHY77489.1| translation initiation factor IF-3 [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
Length = 177
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 13/185 (7%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ +N+ I+A+ VRL+ +G ++ VS EAL +A + DLVE+ A PP
Sbjct: 2 RQDKRAAPKAPINENISAREVRLIGADGEQIGIVSIDEALQVAEEAKLDLVEISADAIPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KEV+F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQVAAAKKNQKQIQVKEVKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
G R K G++ ++LG L R+ + + + VE P +E +Q +I
Sbjct: 117 SDGDRAKVSLRFRGREMAHQELGMELLKRVENDLAEYGSVEQHPKMEGRQLIMVI----- 171
Query: 249 GPSKK 253
P KK
Sbjct: 172 APKKK 176
>gi|88810666|ref|ZP_01125923.1| translation initiation factor IF-3 [Nitrococcus mobilis Nb-231]
gi|88792296|gb|EAR23406.1| translation initiation factor IF-3 [Nitrococcus mobilis Nb-231]
Length = 177
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 8/161 (4%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N +I VRL+ +EG +V + +AL A DLVE+D A+PPVC++M+
Sbjct: 7 TDNRRVNREIRVPNVRLINEEGEQVGIIDIEDALNSAEEAGLDLVELDGNADPPVCRVMN 66
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K K+++ K++ K + + + KEV+F ++ D Q+K +KR ++ G +V
Sbjct: 67 YGKWKFEQSKKQQAARKKQKQVQI-----KEVKFRPGTDEGDYQVKLRNLKRFLEDGDKV 121
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
K G++ ++LG L R+ + ++ +E P +E
Sbjct: 122 KVTLRFRGREMAHQELGLELLERVESDLMELGAIEQRPRME 162
>gi|262199907|ref|YP_003271116.1| translation initiation factor IF-3 [Haliangium ochraceum DSM 14365]
gi|262083254|gb|ACY19223.1| translation initiation factor IF-3 [Haliangium ochraceum DSM 14365]
Length = 177
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
++ R EAL LA DL+E++ KA PPVCKIMD+ K KY++ K++ ++ AK +
Sbjct: 1 MIEREEALRLAEEAGLDLIEIEAKARPPVCKIMDYGKFKYERSKKKRTQSDAK-----RT 55
Query: 162 GDCKEVRF--SGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI 219
+ KEVR S KI+ D++++ + ++ + G+RV+ + G++ ++G RL
Sbjct: 56 TETKEVRLGRSVKIDDHDIRVRMEQARKFLLGGHRVRIIQRFRGREMAHTEIG--FERLQ 113
Query: 220 DLIEDIS 226
+L E++S
Sbjct: 114 ELAEELS 120
>gi|25028065|ref|NP_738119.1| translation initiation factor IF-3 [Corynebacterium efficiens
YS-314]
gi|23493349|dbj|BAC18319.1| putative translation initiation factor IF-3 [Corynebacterium
efficiens YS-314]
Length = 225
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +A LA DLVEV A PPVCKIMD+ K
Sbjct: 58 RINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPTAKPPVCKIMDYGKF 117
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K V R ++KG +VK
Sbjct: 118 KYEAAQKARESRKNQQQTVV-----KEQKLRPKIDDHDYETKKSNVIRFLEKGSKVKVTI 172
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ G+++ +LG L RL + + + VVE+ + + +I GP +KG
Sbjct: 173 MFRGREQARPELGYRLLERLANDVAEYGVVETRAKQDGRNMTMVI-----GPLRKG 223
>gi|297621144|ref|YP_003709281.1| Translation initiation factor IF-3 [Waddlia chondrophila WSU
86-1044]
gi|297376445|gb|ADI38275.1| Translation initiation factor IF-3 [Waddlia chondrophila WSU
86-1044]
Length = 168
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G +V +S +AL A DLVE+ ANPPVCKI+D+ K
Sbjct: 2 RINREIRAPKVRVISSTGEQVGIMSPRDALKRAEDEGLDLVEIAPNANPPVCKIIDYGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y + +EK+ KA I + KEV+ I + DLQ K K ++KG +VK
Sbjct: 62 RYDQTKREKESKKASHQIKV-----KEVKVKPNINEHDLQTKMRHAKDFLEKGNKVKVTC 116
Query: 200 LPVGKKEETEDLGGYL-SRLIDLIEDISVVES 230
+ G++ + +G L R+++ + +++V E+
Sbjct: 117 MFRGREMAHKSIGERLIQRIVEDLNEVAVCET 148
>gi|402834346|ref|ZP_10882948.1| translation initiation factor IF-3 [Selenomonas sp. CM52]
gi|402277964|gb|EJU27030.1| translation initiation factor IF-3 [Selenomonas sp. CM52]
Length = 147
Score = 72.0 bits (175), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 79/142 (55%), Gaps = 6/142 (4%)
Query: 103 VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKG 162
++ +AL +A DLVEV KA PPVC+IMDF K +Y+++ +EK+ K + +T+
Sbjct: 1 MATRDALRMAEEQHLDLVEVAPKAKPPVCRIMDFGKYRYEQQKREKEAKKKQKIVTI--- 57
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDL 221
KEV+ IEQ D +K R +++G +VK + G++ +LG L+++ D
Sbjct: 58 --KEVKLRPNIEQHDFDVKLKNALRFLEEGNKVKVTIMFRGRELSHPELGREVLNKVADR 115
Query: 222 IEDISVVESGPHVERKQAYAII 243
++++ +E +E K I+
Sbjct: 116 LKELVSIERDAKLEGKNMTMIL 137
>gi|365154368|ref|ZP_09350801.1| translation initiation factor IF-3 [Campylobacter sp. 10_1_50]
gi|171855144|sp|A7ZAZ8.2|IF3_CAMC1 RecName: Full=Translation initiation factor IF-3
gi|158604893|gb|EAT99125.3| translation initiation factor IF-3 [Campylobacter concisus 13826]
gi|363650206|gb|EHL89297.1| translation initiation factor IF-3 [Campylobacter sp. 10_1_50]
Length = 172
Score = 72.0 bits (175), Expect = 6e-10, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VR V D+G + V+SR EAL ++ L DLV + A PPVCKIMD+ K +
Sbjct: 9 LNEDIRAREVRCVGDDGTAYGVISRDEALEISNKLGLDLVLIAPDAKPPVCKIMDYGKFR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K+K+ K + I + KE++ S KI Q D+ K + G VK
Sbjct: 69 YQQEKKQKEAKKKQKTIEI-----KEIKLSVKIAQNDINYKVKHASEFLQDGKHVKFRVF 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ T + G L ++ ++I+D + + P +E
Sbjct: 124 LKGREMSTPEAGVAMLEKVWEMIKDEADRDKEPIIE 159
>gi|409422074|ref|ZP_11259187.1| translation initiation factor IF-3 [Pseudomonas sp. HYS]
Length = 177
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I+A+ VRL+ +G ++ VS EAL +A + DLVE+ A PPVCK+MD+ K
Sbjct: 13 INENISAREVRLIGADGEQIGIVSIDEALRIAEEAKLDLVEISADAVPPVCKVMDYGKHL 72
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++K+ K+ + AK K+ KE++F E+ D Q+K + R + G R K
Sbjct: 73 FEKK-KQANEAKKNQ----KQVQIKEIKFRPGTEEGDYQVKLRNLVRFLSDGDRAKISLR 127
Query: 201 PVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L + + DL+E S VE P +E +Q +I
Sbjct: 128 FRGREMAHQELGMELLKRVETDLLEYGS-VEQHPKMEGRQLIMVI 171
>gi|418461731|ref|ZP_13032795.1| translation initiation factor IF-3 [Saccharomonospora azurea SZMC
14600]
gi|359738140|gb|EHK87040.1| translation initiation factor IF-3 [Saccharomonospora azurea SZMC
14600]
Length = 192
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
+S R+N++I VRLV G +V V +AL LA+ DLVEV +A PPV K+MD
Sbjct: 8 SSETRINERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVAKLMD 67
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ K ++ ++ +T+ KE + KI+ D K V R ++ G +V
Sbjct: 68 YGKFKYESAQKARE-SRRNQQLTV----IKEQKLRPKIDPHDYATKKGHVSRFLEAGNKV 122
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP 232
K + G+++ +LG L RL D + ++ VES P
Sbjct: 123 KVTIMFRGREQSRPELGFRLLQRLADDVSELGFVESKP 160
>gi|16079939|ref|NP_390765.1| translation initiation factor IF-3 [Bacillus subtilis subsp.
subtilis str. 168]
gi|238054379|sp|P55872.3|IF3_BACSU RecName: Full=Translation initiation factor IF-3
gi|1770007|emb|CAA99616.1| translation initiation factor IF3 [Bacillus subtilis]
gi|2635352|emb|CAB14847.1| initiation factor IF-3 [Bacillus subtilis subsp. subtilis str. 168]
Length = 173
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + + SR EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 8 VNEGIRAREVRLIGQNGDQLGIKSRQEALEIAGRANLDLVLVAANAKPPVCRIMDYGKFR 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I L KEVR S I++ D K + ++KG +VK
Sbjct: 68 FEQQKKEKEARKNQKIINL-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 122
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + +++ VE+ P ++ + + ++
Sbjct: 123 FKGRAITHKEIGQRVLDRFSEACAEVATVETKPKMDGRSMFLML 166
>gi|408533186|emb|CCK31360.1| Translation initiation factor IF-3 [Streptomyces davawensis JCM
4913]
Length = 193
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ K ++ +
Sbjct: 3 IVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKAREARKNQAHTVI-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE++ KI+ D K V R + +G +VK + G+++ +LG L RL +
Sbjct: 61 ---KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGYRLLQRLAE 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
++D+ VES P + + ++ GP KK
Sbjct: 118 DVQDLGFVESNPKQDGRNMIMVL-----GPHKK 145
>gi|419954969|ref|ZP_14471102.1| translation initiation factor IF-3 [Pseudomonas stutzeri TS44]
gi|387968152|gb|EIK52444.1| translation initiation factor IF-3 [Pseudomonas stutzeri TS44]
Length = 177
Score = 72.0 bits (175), Expect = 7e-10, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D++ +N+ I+A+ VRL+ +G ++ VS EAL +A + DLVE+ A PP
Sbjct: 2 RQDKRTAPKAPINENISAREVRLIGADGEQIGIVSIDEALRVAEEAKLDLVEISADAVPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KE++F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQVAAAKKNQKQIQVKEIKFRPGTEEGDYQVKLRNLIRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF 248
+G R K G++ ++LG L R+ + + + VE P +E +Q +I
Sbjct: 117 SEGDRAKVSLRFRGREMAHQELGMELLKRVENDLTEYGSVEQHPKMEGRQLIMVI----- 171
Query: 249 GPSKK 253
P KK
Sbjct: 172 APKKK 176
>gi|62185352|ref|YP_220137.1| translation initiation factor IF-3 [Chlamydophila abortus S26/3]
gi|62148419|emb|CAH64186.1| initiation factor IF-3 [Chlamydophila abortus S26/3]
Length = 180
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N +I A VRL+ G + +++ +AL LAR DLVEV + PPVCKIMD+ K +
Sbjct: 1 MNRQIRAPKVRLIGSAGEQLGILNTKDALDLARESDLDLVEVASNSEPPVCKIMDYGKYR 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y KEKD KA+ + + KEV+ I+ D K + ++KG +VK +
Sbjct: 61 YNLTKKEKDSKKAQHQVRV-----KEVKLKPNIDDNDFATKLKQARGFIEKGNKVKITCM 115
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G + ++ +ED+ +ES P + + ++
Sbjct: 116 FRGRELAYPEHGYTVVQKMSQGLEDVGFIESEPKLNGRSLICVV 159
>gi|422844097|ref|ZP_16890807.1| translation initiation factor IF3 [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325685797|gb|EGD27870.1| translation initiation factor IF3 [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 173
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 9/165 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VRL+ EG +V VSR+EAL A DL + A PPV KI+D+ K +
Sbjct: 3 LNENIRAREVRLINAEGEQVGIVSRNEALRQASDAGLDLTLISPNAKPPVAKILDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDK-GYRVKCMA 199
++++ K K+ K ++ KE+R S IE D + K ++ ++K G +V+
Sbjct: 63 FEQQKKLKESRKNSKQVS-----VKEIRLSPAIEGNDFETKLKHARKFLEKEGAKVRVSI 117
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L ++ + DI+VV S P +E +Q + ++
Sbjct: 118 RFRGRAITHKELGQQVLEKMAEETSDIAVVTSRPKMEGRQMFLML 162
>gi|170755251|ref|YP_001782771.1| translation initiation factor IF-3 [Clostridium botulinum B1 str.
Okra]
gi|429246456|ref|ZP_19209776.1| translation initiation factor IF-3 [Clostridium botulinum
CFSAN001628]
gi|169120463|gb|ACA44299.1| translation initiation factor IF-3 [Clostridium botulinum B1 str.
Okra]
gi|428756546|gb|EKX79098.1| translation initiation factor IF-3 [Clostridium botulinum
CFSAN001628]
Length = 184
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM+ K
Sbjct: 21 MNEQIREKEVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNHGKFL 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I + KEVR S IE D+++KA+ ++ ++ G +VK
Sbjct: 81 YEQTKKDKEAKKNQKVI-----NIKEVRLSPTIEAHDIEIKANNARKFLNAGNKVKVTVR 135
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L+ + +E+ V+E P +E + I+
Sbjct: 136 FRGREADYSFKGNKILNSFYEKVEEAGVMEKAPKLEGRNMIMIL 179
>gi|409349114|ref|ZP_11232659.1| Translation initiation factor IF-3 [Lactobacillus equicursoris CIP
110162]
gi|407878386|emb|CCK84717.1| Translation initiation factor IF-3 [Lactobacillus equicursoris CIP
110162]
Length = 173
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 9/165 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VRL+ +G +V VSR+EAL A DL + A PPV KI+D+ K +
Sbjct: 3 LNESIRAREVRLINADGEQVGVVSRNEALRQASDAGLDLALISPNAKPPVAKILDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDK-GYRVKCMA 199
++++ K K+ K ++ KE+R S IE D + K ++ ++K G +V+
Sbjct: 63 FEQQKKLKESRKNSKQVS-----VKEIRLSPTIEGNDFETKLKHARKFLEKEGAKVRVSI 117
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L ++ D DI+VV S P +E +Q + ++
Sbjct: 118 RFRGRAITHKELGQQVLEKMADETSDIAVVTSRPKMEGRQMFLML 162
>gi|384463387|ref|YP_005675982.1| translation initiation factor IF-3 [Clostridium botulinum F str.
230613]
gi|295320404|gb|ADG00782.1| translation initiation factor IF-3 [Clostridium botulinum F str.
230613]
Length = 164
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VRLV EG + VVS EA LA + DLV + A PPVCKIM+ K
Sbjct: 1 MNEQIREKEVRLVGSEGEQLGVVSSSEAQKLADEKELDLVLIAPTAKPPVCKIMNHGKFL 60
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y++ K+K+ K + I + KEVR S IE D+++KA+ ++ ++ G +VK
Sbjct: 61 YEQTKKDKEAKKNQKVINI-----KEVRLSPTIEAHDIEIKANNARKFLNAGNKVKVTVR 115
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L+ + +E+ +E P +E + I+
Sbjct: 116 FRGREADYSFKGNKILNSFYEKVEEAGAMEKAPKLEGRNMIMIL 159
>gi|269126373|ref|YP_003299743.1| translation initiation factor IF-3 [Thermomonospora curvata DSM
43183]
gi|268311331|gb|ACY97705.1| translation initiation factor IF-3 [Thermomonospora curvata DSM
43183]
Length = 177
Score = 72.0 bits (175), Expect = 7e-10, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV G +V V +AL LAR DLVEV A PPV K+MD+ K KY+ +K ++
Sbjct: 4 VRLVGPNGEQVGIVPIVKALELAREADLDLVEVAPTARPPVAKLMDYGKFKYESAMKARE 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ ++ + KE++ KI+ D + K V R + G +VK + G+++
Sbjct: 64 ARRNQAHTVI-----KEIKLRPKIDPHDYETKKGHVVRFLKGGDKVKVTIMFRGREQSRP 118
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+LG L RL D + D+ VES P + + +I GP KK
Sbjct: 119 ELGFRLLQRLADDVADLGFVESRPKQDGRNMIMVI-----GPHKK 158
>gi|163782696|ref|ZP_02177692.1| initiation factor IF-3 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881817|gb|EDP75325.1| initiation factor IF-3 [Hydrogenivirga sp. 128-5-R1-1]
Length = 175
Score = 72.0 bits (175), Expect = 7e-10, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 6/157 (3%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ D G +V V EAL LA DLVE+ +A PPVCKIMD+ K
Sbjct: 8 RVNRQIRAREVRLIDDTGQQVGIVPTQEALKLAEEKGLDLVEIAPQAKPPVCKIMDYGKF 67
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ + KE++ K + + + + K++R +I++ DL++K ++ ++ G +V+
Sbjct: 68 KYELKKKEREARKKQKEHQI---EVKDIRMKVRIDEHDLKVKLKHMREFLEDGDKVRVRI 124
Query: 200 LPVGKKEETEDLGGYL-SRLIDLIEDISVVESGPHVE 235
G++ +LG L ++++ + D+ VE P E
Sbjct: 125 RFRGRENIHPELGEKLFKKIVEELGDVGEVEVKPKKE 161
>gi|224534224|ref|ZP_03674802.1| translation initiation factor IF-3 [Borrelia spielmanii A14S]
gi|224514326|gb|EEF84642.1| translation initiation factor IF-3 [Borrelia spielmanii A14S]
Length = 186
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
++N +I A+ VR++ + G +V+ +A+ A+ DLVEV +PPVCKI+D+ K K
Sbjct: 21 KINYRIRAREVRVIFENGTQEVLLIEDAIKKAKEAGLDLVEVSPNVSPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K+ + + G +VK
Sbjct: 81 FHQEKRQKEQKKNQKVIKL-----KEVRMQPKIDTHDLDFKSKNILSFLKDGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L +++ + D++ V+ES +E K + I+
Sbjct: 136 FRGRELAHTYLGYGILDSILEKVGDVNYVLESAAKMEGKTMFLIV 180
>gi|383649760|ref|ZP_09960166.1| translation initiation factor IF-3 [Streptomyces chartreusis NRRL
12338]
Length = 187
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ K ++ +
Sbjct: 3 IVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKAREARKNQAHTVI-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE++ KI+ D K V R + +G +VK + G+++ +LG L RL +
Sbjct: 61 ---KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGYRLLQRLAE 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
++D+ VES P + + ++ GP KK
Sbjct: 118 DVQDLGFVESNPKQDGRNMIMVL-----GPHKK 145
>gi|53712977|ref|YP_098969.1| translation initiation factor IF-3 [Bacteroides fragilis YCH46]
gi|60681189|ref|YP_211333.1| translation initiation factor IF-3 [Bacteroides fragilis NCTC 9343]
gi|265763074|ref|ZP_06091642.1| translation initiation factor IF-3 [Bacteroides sp. 2_1_16]
gi|375357997|ref|YP_005110769.1| putative translation initiation factor IF-3 [Bacteroides fragilis
638R]
gi|81315742|sp|Q5LEQ5.1|IF3_BACFN RecName: Full=Translation initiation factor IF-3
gi|81690705|sp|Q64VP1.1|IF3_BACFR RecName: Full=Translation initiation factor IF-3
gi|52215842|dbj|BAD48435.1| translation initiation factor IF-3 [Bacteroides fragilis YCH46]
gi|60492623|emb|CAH07395.1| putative translation initiation factor IF-3 [Bacteroides fragilis
NCTC 9343]
gi|263255682|gb|EEZ27028.1| translation initiation factor IF-3 [Bacteroides sp. 2_1_16]
gi|301162678|emb|CBW22225.1| putative translation initiation factor IF-3 [Bacteroides fragilis
638R]
Length = 203
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 29/221 (13%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGH-KVVSRHEALALARSLQCDLVEVDRKANPPVC 131
K++ S R+N++I A+ VR+V D+ KV +AL LA + DLVE+ A PPVC
Sbjct: 2 KNDSMKSQYRINEQIRAKEVRIVGDDVEPKVYPIFQALKLAEEKELDLVEISPNAQPPVC 61
Query: 132 KIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDK 191
+I+D+ K YQ + ++K++ KAK K + KE+RF + + D K K ++
Sbjct: 62 RIIDYSKFLYQLKKRQKEQ-KAKQ----VKVNVKEIRFGPQTDDHDYNFKLKHAKGFLED 116
Query: 192 GYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G +VK G+ KE+ E L L R + +ED + V+ P +E K+ ++
Sbjct: 117 GDKVKAYVFFKGRSILFKEQGEVL---LLRFANDLEDYAKVDQLPVLEGKRM-----TIQ 168
Query: 248 FGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPA 288
P KK S K ATP +V PA
Sbjct: 169 LSPKKK-----------ESATKKPATPKPATPAAVKAEKPA 198
>gi|374317406|ref|YP_005063834.1| translation initiation factor IF-3 [Sphaerochaeta pleomorpha str.
Grapes]
gi|359353050|gb|AEV30824.1| translation initiation factor IF-3 [Sphaerochaeta pleomorpha str.
Grapes]
Length = 182
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
T R+N +I A+ V ++ +G++ ++S +A+ LA S DLVEV ANPPVCKI+D
Sbjct: 3 TKDLRINRQIRAKEVYVIDADGNQKGIMSVFDAVLLAESAGLDLVEVSPTANPPVCKILD 62
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
F K +Y++E + +D AK + T+ K KE+R KIE+ DL+ K+ + + +G +V
Sbjct: 63 FGKYRYEQEKRIRD---AKRNQTVIK--IKEIRMQPKIEKHDLETKSKFIGDFLAEGNKV 117
Query: 196 KCMALPVGKKEETEDLG 212
K G++ +LG
Sbjct: 118 KVSIRFRGRELAHTELG 134
>gi|389843168|ref|YP_006345248.1| translation initiation factor IF-3 [Mesotoga prima MesG1.Ag.4.2]
gi|387857914|gb|AFK06005.1| translation initiation factor IF-3 [Mesotoga prima MesG1.Ag.4.2]
Length = 175
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV G + VV EAL +AR DLV V ANPPV +IMD+ K KY EKD
Sbjct: 5 VRLVDMNGEQLGVVQTSEALRIAREKGLDLVLVAPAANPPVARIMDYGKYKY-----EKD 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ K ++ K+ KE++F +I++ D Q K + +K ++KG +V+ + + G++
Sbjct: 60 KRKKEAKKKTKQSQLKEMKFRIRIDEHDFQTKTNRIKEFLEKGSKVRVVIMFRGREIVFS 119
Query: 210 DLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIR 244
D G L R+ D ++ IS ++ P +E + + I++
Sbjct: 120 DKGREILERVADQLQQISDIDRPPKLEGRDMWMILK 155
>gi|427715625|ref|YP_007063619.1| translation initiation factor 3 (bIF-3) [Calothrix sp. PCC 7507]
gi|427348061|gb|AFY30785.1| bacterial translation initiation factor 3 (bIF-3) [Calothrix sp.
PCC 7507]
Length = 177
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P++N++I +R++ +G + +++ EA+ LA + DLV + KA+PPVC+IMD+ K
Sbjct: 13 PQINERIRFPKIRVIDTDGSQLGIITPQEAIQLAEEKELDLVLLSDKADPPVCRIMDYGK 72
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+++E K ++ K + D KEV+ KIE+ D ++ +R + G +VK
Sbjct: 73 YKFEQEKKAREARKKQH-----TADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKAT 127
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + DL L R+ +E V+ P E + +I
Sbjct: 128 VMFRGREIQHSDLAEELLKRMATDLEPFGEVQQAPKKEGRNMMMLI 173
>gi|407975386|ref|ZP_11156291.1| translation initiation factor IF-3 [Nitratireductor indicus C115]
gi|407429014|gb|EKF41693.1| translation initiation factor IF-3 [Nitratireductor indicus C115]
Length = 169
Score = 72.0 bits (175), Expect = 8e-10, Method: Composition-based stats.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR N I V+L+ DEG+ VVS +ALA A DL+E+ + PPVCKI D
Sbjct: 4 GPRANRDIRVPKVQLIDDEGNNRGVVSIEDALAAAEEAGLDLIEIAPNSEPPVCKIGDLG 63
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KYQ + K + K + I + KE++ I+ D ++K V+R ++G +VK
Sbjct: 64 KMKYQSQKKAAEARKKQKTIEI-----KEIKMRPNIDTHDYEVKMKAVRRFFEEGDKVKL 118
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +LG L+R+ + +E+I+ VE+ P +E +Q ++
Sbjct: 119 TLRFRGREMAHMELGMQLLNRVREEVEEIAKVEAEPKLEGRQMMMVL 165
>gi|348617839|ref|ZP_08884373.1| Translation initiation factor IF-3 [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816783|emb|CCD29023.1| Translation initiation factor IF-3 [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 156
Score = 72.0 bits (175), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 95 VLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAK 154
V +E VV EAL LA + DLVE+ +A PPVC++MD+ K +YQ+ K ++ AK K
Sbjct: 6 VSNEAIGVVKLAEALRLAEQAEVDLVEIAPRATPPVCRLMDYQKFRYQEARKARE-AKLK 64
Query: 155 SDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-G 213
I KEV+F ++ D +K + +KR +++G + + G++ +D+G
Sbjct: 65 QKII----RVKEVKFRPGTDEGDFNVKLNNLKRFLEEGNKTQITLRFRGREMAHQDIGMR 120
Query: 214 YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
L RL +++ VE P + +Q + F P KK
Sbjct: 121 VLERLRHELDEYGQVEQTPKMAGRQMTMV-----FAPKKK 155
>gi|318061737|ref|ZP_07980458.1| translation initiation factor IF-3 [Streptomyces sp. SA3_actG]
gi|318080746|ref|ZP_07988078.1| translation initiation factor IF-3 [Streptomyces sp. SA3_actF]
Length = 191
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ K ++ +
Sbjct: 3 IVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKAREARKNQAHTVI-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE++ KI+ D K V R + +G +VK + G+++ +LG L RL D
Sbjct: 61 ---KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGRRLLQRLAD 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
++D+ +ES P + + ++ GP KK
Sbjct: 118 DVQDLGFIESSPKQDGRNMIMVL-----GPHKK 145
>gi|226944148|ref|YP_002799221.1| translation initiation factor IF-3 [Azotobacter vinelandii DJ]
gi|226719075|gb|ACO78246.1| translation initiation factor IF-3 [Azotobacter vinelandii DJ]
Length = 177
Score = 72.0 bits (175), Expect = 8e-10, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 72 KKDEKETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPP 129
++D K +N+ I+A+ VRL+ +G ++ VS EAL +A + DLVE+ A PP
Sbjct: 2 RQDRKAQPKAPINENISAREVRLIGVDGEQIGIVSIDEALRVAEEAKLDLVEISADAVPP 61
Query: 130 VCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLM 189
VC+IMD Y K L EK + A + K+ KE++F E+ D Q+K + R +
Sbjct: 62 VCRIMD-----YGKHLFEKKKQVAAAKKNQKQVQIKEIKFRPGTEEGDYQVKLRNLVRFL 116
Query: 190 DKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G + K G++ ++LG L R+ + + + VE P +E +Q +I
Sbjct: 117 NDGDKAKVSLRFRGREMAHQELGMELLKRVENDLAEFGTVEQYPKLEGRQLMMVI 171
>gi|383809915|ref|ZP_09965427.1| translation initiation factor IF-3 [Rothia aeria F0474]
gi|383447235|gb|EID50220.1| translation initiation factor IF-3 [Rothia aeria F0474]
Length = 186
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Query: 107 EALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKE 166
+AL LA + DLVEV A PPVCK+MD+ K KY+ +K ++ K + L KE
Sbjct: 3 DALRLAEDAELDLVEVAPNAKPPVCKLMDYGKYKYEAAVKARESRKKQVKAVL-----KE 57
Query: 167 VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDI 225
+RF KI+ + + K +R + G +VK M G++++ ++G L RL + + ++
Sbjct: 58 IRFRLKIDTHNYETKVGHARRFLSGGDKVKAMIQFRGREQQRPEMGVRLLERLAEELAEV 117
Query: 226 SVVESGPH 233
S VES P
Sbjct: 118 STVESRPR 125
>gi|311031378|ref|ZP_07709468.1| translation initiation factor IF-3 [Bacillus sp. m3-13]
Length = 167
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ G + + S+ EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 3 VNDGIRAREVRLIGQNGDQLGIKSKVEALEIAARANLDLVMVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+K+ K + I+L KEVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKDKEARKNQKVISL-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R ++S +ES P ++ + + I+
Sbjct: 118 FKGRAITHKEIGQRVLDRFSAACAEVSTIESHPKMDGRSMFLIL 161
>gi|325266387|ref|ZP_08133065.1| translation initiation factor IF3 [Kingella denitrificans ATCC
33394]
gi|324982180|gb|EGC17814.1| translation initiation factor IF3 [Kingella denitrificans ATCC
33394]
Length = 155
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%)
Query: 92 VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
+RL+ EG + VVS EAL++A DLVE+ A PPVCK+MDF K KY++ K++D
Sbjct: 1 MRLISGEGEQLGVVSLKEALSMAEEKDVDLVEISPTAKPPVCKLMDFGKYKYEQS-KKRD 59
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
AK K KE++F ++ D +K VKR ++ G +VK G++ +
Sbjct: 60 EAKKKQKQVQI----KEIKFRPGTDEGDYNIKMRNVKRFLEDGDKVKITLRFRGREMAHQ 115
Query: 210 DLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G L R+ +E+++ VES P +E +Q ++
Sbjct: 116 EFGAQLLERVKADLEELAAVESFPKMEGRQMVMMV 150
>gi|299821796|ref|ZP_07053684.1| translation initiation factor IF3 [Listeria grayi DSM 20601]
gi|299817461|gb|EFI84697.1| translation initiation factor IF3 [Listeria grayi DSM 20601]
Length = 196
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ EG + V S+ EAL +A DLV V A PPV +IMD+ K +
Sbjct: 32 VNDGIRAREVRLIDQEGEQLGVKSKVEALGIAEKANLDLVLVAPNAKPPVARIMDYGKFR 91
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+K+ K + I + KEVR S I++ D K ++ ++KG +VKC
Sbjct: 92 FEQQKKDKEARKNQKVIVM-----KEVRLSPTIDEHDFNTKLRNARKFLEKGDKVKCSIR 146
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R D+S VE ++ + + ++
Sbjct: 147 FKGRAITHKEIGQKVLDRFATECTDLSTVEQKAKMDGRSMFLVL 190
>gi|406837400|ref|ZP_11096994.1| translation initiation factor IF-3 [Lactobacillus vini DSM 20605]
Length = 168
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ ++G + V S+ EAL +A DLV V KA PPV ++MDF K
Sbjct: 2 VNEGIRAREVRLIANDGSQLGVKSKQEALQIAERANLDLVLVAPKAKPPVARVMDFG--K 59
Query: 141 YQKELKEKDR-AKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+ EL++K R A+ K + + KEVR S I+ D K ++ + KG +VK
Sbjct: 60 YRFELQKKQREARKKQKVI----NVKEVRLSPTIDVNDFNTKTKNAQKFLSKGDKVKVSI 115
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L+R + D++ VES ++ + + ++
Sbjct: 116 RFKGRAITHKEIGYDVLNRFAKAVADVATVESRAKMDGRSMFMML 160
>gi|340777242|ref|ZP_08697185.1| translation initiation factor IF-3 [Acetobacter aceti NBRC 14818]
Length = 144
Score = 72.0 bits (175), Expect = 8e-10, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
V++ EALA A + DL+E+ A PPVCKI+D+ K KY+++ K+++ A+ K +
Sbjct: 4 VMTTREALARAYGVGLDLLEISPNAEPPVCKILDYGKYKYEQQ-KKRNEARKKQKVI--- 59
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
+ KEV+ I++ D Q+K ++K + G +VK G++ +DLG L R+ +
Sbjct: 60 -EIKEVKVRPNIDENDYQVKMRSMKSFIGDGDKVKVTLRFRGREMAHQDLGVKVLERIRN 118
Query: 221 LIEDISVVESGPHVERKQAYAII 243
+E+ + VE P +E +Q ++
Sbjct: 119 EMEEEAKVEQMPRLENRQMVMVL 141
>gi|104774348|ref|YP_619328.1| translation initiation factor IF-3 [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116514443|ref|YP_813349.1| translation initiation factor IF-3 [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|300813175|ref|ZP_07093549.1| translation initiation factor IF-3 [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|385816106|ref|YP_005852497.1| translation initiation factor IF-3 [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|418028689|ref|ZP_12667243.1| hypothetical protein LDBUL1632_00037 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|418035786|ref|ZP_12674228.1| hypothetical protein LDBUL1519_00928 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|103423429|emb|CAI98302.1| Translation initiation factor IF-3 [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116093758|gb|ABJ58911.1| bacterial translation initiation factor 3 (bIF-3) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|300495833|gb|EFK30981.1| translation initiation factor IF-3 [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|325126143|gb|ADY85473.1| Translation initiation factor IF-3 [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|354689352|gb|EHE89350.1| hypothetical protein LDBUL1519_00928 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354691527|gb|EHE91448.1| hypothetical protein LDBUL1632_00037 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 173
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 9/165 (5%)
Query: 83 LNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN+ I A+ VRL+ EG +V VSR+EAL A DL + A PPV KI+D+ K +
Sbjct: 3 LNESIRAREVRLINAEGEQVGVVSRNEALRQASDAGLDLTLISPNAKPPVAKILDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDK-GYRVKCMA 199
++++ K K+ K ++ KE+R S IE D + K ++ ++K G +V+
Sbjct: 63 FEQQKKLKESRKNSKQVS-----VKEIRLSPAIEGNDFETKLKHARKFLEKEGAKVRVSI 117
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L ++ + DI+VV S P +E +Q + ++
Sbjct: 118 RFRGRAITHKELGQQVLEKMAEETSDIAVVTSRPKMEGRQMFLML 162
>gi|22299163|ref|NP_682410.1| translation initiation factor IF-3 [Thermosynechococcus elongatus
BP-1]
gi|29427442|sp|Q8DIG8.1|IF3_THEEB RecName: Full=Translation initiation factor IF-3
gi|22295345|dbj|BAC09172.1| translation initiation factor IF-3 [Thermosynechococcus elongatus
BP-1]
Length = 182
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +N++I+ VR+V +G + ++S EA+A+AR + DLV V KA+PPVCKI+D+ K
Sbjct: 18 PMINERIHFPRVRVVDTDGSQLGIMSSQEAIAIAREKELDLVLVSDKADPPVCKIIDYGK 77
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
++++E K ++ K + D KEV+ KIE+ D + + +R + G +VK
Sbjct: 78 FRFEQEKKAREARKKQHT-----SDVKEVKMRYKIEEHDYNVCINRAERFLKAGDKVKAT 132
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ + L L+R+ + ++ ++ V+ P E
Sbjct: 133 VTFRGREIQHSHLAEELLNRMANDLQAVAEVQQAPKQE 170
>gi|334345232|ref|YP_004553784.1| translation initiation factor IF-3 [Sphingobium chlorophenolicum
L-1]
gi|334101854|gb|AEG49278.1| Translation initiation factor IF-3 [Sphingobium chlorophenolicum
L-1]
Length = 177
Score = 72.0 bits (175), Expect = 8e-10, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
SGPR N+ I VR++ DEG V+ EA+ A L DLVEV A+PPVCK +D
Sbjct: 12 SGPRYNEFITVPKVRVIDDEGENLGVMFTQEAMERAYELGLDLVEVSPTADPPVCKFLDI 71
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+ + K K T K + KE++ I+ D K V + G +VK
Sbjct: 72 GKYKYEAQKKANIARK-----TQKTQELKEIKMRPNIDDHDYDTKMKKVHDFIGDGDKVK 126
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + LG L R+ + + +I+ VE+ P +E +Q ++
Sbjct: 127 ITLRFRGRELSHQQLGMQLLQRVAENVGEIAKVEAYPRMEGRQMLMVL 174
>gi|392940291|ref|ZP_10305935.1| translation initiation factor IF-3 [Thermoanaerobacter siderophilus
SR4]
gi|392292041|gb|EIW00485.1| translation initiation factor IF-3 [Thermoanaerobacter siderophilus
SR4]
Length = 169
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + VRL+ +G ++ +S EA +A+ DLV++ +ANPPVCK+MDF K
Sbjct: 6 QVNEEIRDKEVRLIDQDGKQIGIMSAKEAYKIAQERHLDLVKIAPQANPPVCKLMDFGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y+ +EK+ AK K I + KE+R S IE D +K + + + +G +VK
Sbjct: 66 RYELSKREKE-AKKKQKII----NVKEIRMSPTIEDHDFGVKLKSAIKFLKEGNKVKVTI 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ L L R + + + V+E P++E + ++
Sbjct: 121 RFRGREAAHTSLAEDLLKRFANELSEYGVIEKAPNIEGRNLMMVL 165
>gi|389774318|ref|ZP_10192437.1| translation initiation factor IF-3 [Rhodanobacter spathiphylli B39]
gi|388437917|gb|EIL94672.1| translation initiation factor IF-3 [Rhodanobacter spathiphylli B39]
Length = 155
Score = 71.6 bits (174), Expect = 8e-10, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 15/155 (9%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+++R EALALA+ DLVE+ +PPVC+IMD+ K K++ + K + K + + +
Sbjct: 13 ILTRDEALALAQEAGMDLVEIQPNGDPPVCRIMDYGKFKFEAQKKAQAAKKKQKQVEI-- 70
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDL 221
KEV+F + D Q+K + R +++G +VK G++ +DLG L++ I
Sbjct: 71 ---KEVKFRPVTDVGDYQIKLRNMLRFLEEGDKVKVTIRFRGREMSHQDLGQNLAKKIQ- 126
Query: 222 IEDI---SVVESGPHVERKQAYAIIRHVKFGPSKK 253
EDI VES P +E +Q +I GP KK
Sbjct: 127 -EDIGENGQVESFPRLEGRQMVMMI-----GPKKK 155
>gi|389737206|ref|ZP_10190672.1| translation initiation factor IF-3 [Rhodanobacter sp. 115]
gi|388436802|gb|EIL93645.1| translation initiation factor IF-3 [Rhodanobacter sp. 115]
Length = 159
Score = 71.6 bits (174), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 11/153 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+++R EALALA+ DLVE+ +PPVC+IMD+ K K++ + K + K + + +
Sbjct: 16 ILTRDEALALAQEAGMDLVEIQPNGDPPVCRIMDYGKFKFEAQKKAQAAKKKQKQVEI-- 73
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLI-D 220
KEV+F + D Q+K + R +++G +VK G++ +DLG L++ I +
Sbjct: 74 ---KEVKFRPVTDVGDYQIKLRNMLRFLEEGDKVKVTIRFRGREMSHQDLGQNLAKKIQE 130
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ D VES P +E +Q +I GP KK
Sbjct: 131 DVGDNGQVESWPRLEGRQMVMMI-----GPKKK 158
>gi|336409290|ref|ZP_08589777.1| translation initiation factor IF-3 [Bacteroides sp. 2_1_56FAA]
gi|383117827|ref|ZP_09938570.1| translation initiation factor IF-3 [Bacteroides sp. 3_2_5]
gi|423258036|ref|ZP_17238959.1| translation initiation factor IF-3 [Bacteroides fragilis
CL07T00C01]
gi|423264996|ref|ZP_17243999.1| translation initiation factor IF-3 [Bacteroides fragilis
CL07T12C05]
gi|423268431|ref|ZP_17247403.1| translation initiation factor IF-3 [Bacteroides fragilis
CL05T00C42]
gi|423274009|ref|ZP_17252956.1| translation initiation factor IF-3 [Bacteroides fragilis
CL05T12C13]
gi|423285080|ref|ZP_17263963.1| translation initiation factor IF-3 [Bacteroides fragilis HMW 615]
gi|335947058|gb|EGN08853.1| translation initiation factor IF-3 [Bacteroides sp. 2_1_56FAA]
gi|382973469|gb|EES87103.2| translation initiation factor IF-3 [Bacteroides sp. 3_2_5]
gi|387777482|gb|EIK39579.1| translation initiation factor IF-3 [Bacteroides fragilis
CL07T00C01]
gi|392703715|gb|EIY96856.1| translation initiation factor IF-3 [Bacteroides fragilis
CL05T00C42]
gi|392704729|gb|EIY97864.1| translation initiation factor IF-3 [Bacteroides fragilis
CL07T12C05]
gi|392707442|gb|EIZ00561.1| translation initiation factor IF-3 [Bacteroides fragilis
CL05T12C13]
gi|404579669|gb|EKA84383.1| translation initiation factor IF-3 [Bacteroides fragilis HMW 615]
Length = 217
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 29/221 (13%)
Query: 73 KDEKETSGPRLNDKINAQFVRLVLDEGH-KVVSRHEALALARSLQCDLVEVDRKANPPVC 131
K++ S R+N++I A+ VR+V D+ KV +AL LA + DLVE+ A PPVC
Sbjct: 16 KNDSMKSQYRINEQIRAKEVRIVGDDVEPKVYPIFQALKLAEEKELDLVEISPNAQPPVC 75
Query: 132 KIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDK 191
+I+D+ K YQ + ++K++ KAK K + KE+RF + + D K K ++
Sbjct: 76 RIIDYSKFLYQLKKRQKEQ-KAKQ----VKVNVKEIRFGPQTDDHDYNFKLKHAKGFLED 130
Query: 192 GYRVKCMALPVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G +VK G+ KE+ E L L R + +ED + V+ P +E K+ ++
Sbjct: 131 GDKVKAYVFFKGRSILFKEQGEVL---LLRFANDLEDYAKVDQLPVLEGKRM-----TIQ 182
Query: 248 FGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPA 288
P KK S K ATP +V PA
Sbjct: 183 LSPKKK-----------ESATKKPATPKPATPAAVKAEKPA 212
>gi|226185899|dbj|BAH34003.1| translation initiation factor IF-3 [Rhodococcus erythropolis PR4]
Length = 219
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRLV G +V V +AL LA DLVEV A PPVCKIMD+ K
Sbjct: 6 RINDRIRVPEVRLVGPGGEQVGIVRVEDALRLALEADLDLVEVAPDARPPVCKIMDYGKF 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ ++ +T+ KE + KI+ D + K V R ++ G +VK
Sbjct: 66 KYEAAQKARE-SRKNQQLTV----IKEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
+ G+++ +LG L RL + D+ VE+
Sbjct: 121 MFRGREQSRPELGYRLLQRLGADVADLGFVET 152
>gi|395768427|ref|ZP_10448942.1| translation initiation factor IF-3 [Streptomyces acidiscabies
84-104]
Length = 220
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 11/153 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +AL LA+ DLVEV A PPVCK+MD+ K KY+ +K ++ K ++ +
Sbjct: 3 IVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKAREARKNQAHTVI-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE++ KI+ D K V R + +G +VK + G+++ +LG L RL
Sbjct: 61 ---KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGYRLLQRLAS 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
+ED+ +ES P + + ++ GP KK
Sbjct: 118 DVEDLGFIESNPKQDGRNMIMVL-----GPHKK 145
>gi|357032053|ref|ZP_09093993.1| protein translation initiation factor 3 [Gluconobacter morbifer
G707]
gi|356414280|gb|EHH67927.1| protein translation initiation factor 3 [Gluconobacter morbifer
G707]
Length = 173
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
GPR+ND+I VRL+ + G V+S +AL A S DL+E+ A PPV KI+D+
Sbjct: 8 EGPRVNDEIRVPQVRLIDEAGEMIGVMSTRDALNRAFSAGLDLLEISPTAVPPVVKILDY 67
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ K+K+ A+ K + + KEV+ + D Q K + +D+G +VK
Sbjct: 68 GKFKYEQQ-KKKNEARKKQKVI----EIKEVKVRPGTGEHDFQTKLKAINTFLDEGDKVK 122
Query: 197 CMALPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ ++LG + I + +E+ + VE P +E +Q ++
Sbjct: 123 VSLRFKGREMAHQELGIRMMERIRIEVEEKAKVEQMPRLENRQMLMVL 170
>gi|336114626|ref|YP_004569393.1| translation initiation factor IF-3 [Bacillus coagulans 2-6]
gi|335368056|gb|AEH54007.1| translation initiation factor IF-3 [Bacillus coagulans 2-6]
Length = 168
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + V SR+EAL +A DLV V A PPV +IMD+ K
Sbjct: 3 VNEGIRAREVRLIGQNGEQMGVKSRNEALEIAARANLDLVLVAPNAKPPVARIMDYG--K 60
Query: 141 YQKELKEKDR-AKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
Y+ E+++KDR A+ K I + KEVR S IE+ D K + ++KG +VK
Sbjct: 61 YRFEMQKKDREARKKQKII----NVKEVRLSPTIEEHDFNTKLRNAIKFLEKGDKVKASI 116
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + +++ VES P ++ + + ++
Sbjct: 117 RFKGRAITHKEIGQRVLDRFAEACAEVATVESKPKMDGRSMFLVL 161
>gi|311740496|ref|ZP_07714323.1| translation initiation factor IF3 [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304016|gb|EFQ80092.1| translation initiation factor IF3 [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 148
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 102 VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKK 161
+V +A LA DLVEV KA PPV KIMD+ K KY++ K ++ K + +
Sbjct: 3 IVRTDDARKLAYEADLDLVEVAPKAKPPVAKIMDYGKFKYEQAQKAREARKNQQQTVV-- 60
Query: 162 GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLID 220
KE +F KI+ D + K V R ++KG +VK + G+++ +LG L RL D
Sbjct: 61 ---KEQKFRPKIDDHDYETKKGNVVRFLEKGSKVKVTIMFRGREQSRPELGFRLLERLAD 117
Query: 221 LIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ ++ VVES P + + ++ GP +KG
Sbjct: 118 DVAEVGVVESRPKQDGRNMTMVL-----GPVRKG 146
>gi|407643790|ref|YP_006807549.1| bacterial translation initiation factor 3 (bIF-3) [Nocardia
brasiliensis ATCC 700358]
gi|407306674|gb|AFU00575.1| bacterial translation initiation factor 3 (bIF-3) [Nocardia
brasiliensis ATCC 700358]
Length = 232
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 8/152 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+ND+I VRL+ G +V V +AL +A DLVEV A PPVCKIMD+ K
Sbjct: 24 RINDRIRVPEVRLIGPSGEQVGIVRVEDALRVAMEADLDLVEVAPDARPPVCKIMDYGKF 83
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D K V R ++ G +VK
Sbjct: 84 KYETAQKARESRKNQVQTVI-----KEQKLRPKIDDHDYATKRGHVMRFLEAGSKVKVTI 138
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVES 230
+ G+++ +LG L RL + D+ VE+
Sbjct: 139 MFRGREQSRPELGYRLLQRLAADVADLGFVET 170
>gi|332981194|ref|YP_004462635.1| translation initiation factor 3 (bIF-3) [Mahella australiensis 50-1
BON]
gi|332698872|gb|AEE95813.1| bacterial translation initiation factor 3 (bIF-3) [Mahella
australiensis 50-1 BON]
Length = 167
Score = 71.6 bits (174), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR+V +G + ++ +AL LA+ Q DLV V +A PPVC+IMD+ K K
Sbjct: 2 VNEEIREKEVRVVDVDGKQLGIMPLRQALELAQRKQLDLVNVAPQATPPVCRIMDYGKYK 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+ +EK+ K + I D KE+R S IE+ D+ +K + + G +VK
Sbjct: 62 YEAIKQEKEAKKNQRII-----DIKEIRLSTTIEEHDIDVKIKNAIKFLKNGDKVKVTVR 116
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ D+ L + + ++ +E P ++ + I+
Sbjct: 117 FRGRQITHPDIAAEILKNFAEKVAEVGTIEKAPQMDGRNMLMIL 160
>gi|325982724|ref|YP_004295126.1| Translation initiation factor IF-3 [Nitrosomonas sp. AL212]
gi|325532243|gb|ADZ26964.1| Translation initiation factor IF-3 [Nitrosomonas sp. AL212]
Length = 184
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I+ VRL+ G +V V +A ALA DLVE+ A PPVC++MD+ K
Sbjct: 2 RINEEIDVPEVRLIGVNGEQVGIVLLADANALAEDAGVDLVEIAPTAQPPVCRLMDYGKF 61
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+YQ E K+K AK K K+ KE++F ++ D +K + +D+G +VK
Sbjct: 62 RYQ-ESKKKHDAKLKQ----KQVQIKEIKFRPNTDEGDYNIKLRNLISFLDEGDKVKVTL 116
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++ G L R+ D +E ++VE P +E +Q ++
Sbjct: 117 RFRGREMAHQEFGMRLLERVKDDLESFAIVEQFPKMEGRQMVMVL 161
>gi|374600444|ref|ZP_09673446.1| bacterial translation initiation factor 3 (bIF-3) [Myroides
odoratus DSM 2801]
gi|423325957|ref|ZP_17303797.1| translation initiation factor IF-3 [Myroides odoratimimus CIP
103059]
gi|373911914|gb|EHQ43763.1| bacterial translation initiation factor 3 (bIF-3) [Myroides
odoratus DSM 2801]
gi|404604625|gb|EKB04242.1| translation initiation factor IF-3 [Myroides odoratimimus CIP
103059]
Length = 168
Score = 71.6 bits (174), Expect = 9e-10, Method: Composition-based stats.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKVVSR-HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N+ I VRLV D V + +AL LA + DLVE+ A PPVCK++D+ K
Sbjct: 3 RVNNAIRVPEVRLVGDNVETGVYKLADALRLAEEQELDLVEISPNAEPPVCKVIDYKKFL 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ +EK + IT+ KE+RF + ++ D + K ++ + +G ++K
Sbjct: 63 YEQKKREKMLKAKSTQITV-----KEIRFGPQTDEHDYEFKKKNAEKFLKEGAKLKAFVF 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G+ +D G L RL +E+ VES P +E K+ I P KK
Sbjct: 118 FKGRSIIYKDQGQILLLRLAQDLEEFGKVESMPVLEGKRMTMFI-----APKKK 166
>gi|167763512|ref|ZP_02435639.1| hypothetical protein BACSTE_01886 [Bacteroides stercoris ATCC
43183]
gi|167698806|gb|EDS15385.1| translation initiation factor IF-3 [Bacteroides stercoris ATCC
43183]
Length = 200
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 13/162 (8%)
Query: 82 RLNDKINAQFVRLVLDEGH-KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N++I A+ VR+V DE KV +AL +A ++ DLVE+ A PPVC+I+D+ K
Sbjct: 11 RINEQIRAKEVRIVGDEVEPKVYPIAQALKMAEEMEADLVEISPNAQPPVCRIIDYSKFL 70
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ + ++K++ KAK K + KE+RF + + D K K ++ G +VK
Sbjct: 71 YQLKKRQKEQ-KAKQ----VKVNVKEIRFGPQTDDHDYNFKLKHAKGFLEDGDKVKAYVF 125
Query: 201 PVGK----KEETEDLGGYLSRLIDLIEDISVVESGPHVERKQ 238
G+ KE+ E L L R + +ED + V+ P +E K+
Sbjct: 126 FKGRSILFKEQGEVL---LLRFANDLEDYAKVDQMPVLEGKR 164
>gi|418245373|ref|ZP_12871780.1| translation initiation factor IF-3 [Corynebacterium glutamicum ATCC
14067]
gi|354510781|gb|EHE83703.1| translation initiation factor IF-3 [Corynebacterium glutamicum ATCC
14067]
Length = 189
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N++I VRLV G +V V +A LA DLVEV A PPVCKIMD+ K
Sbjct: 22 RINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPNAKPPVCKIMDYGKF 81
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY+ K ++ K + + KE + KI+ D + K V R ++KG +VK
Sbjct: 82 KYEAAQKARESRKNQQQTVV-----KEQKLRPKIDDHDYETKKSNVIRFLEKGSKVKVTI 136
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKG 254
+ G+++ +LG L RL + + D +VE+ + + ++ GP +KG
Sbjct: 137 MFRGREQARPELGYRLLERLANDVVDFGIVETRAKQDGRNMTMVL-----GPVRKG 187
>gi|418661073|ref|ZP_13222675.1| translation initiation factor IF-3, partial [Staphylococcus aureus
subsp. aureus IS-122]
gi|375039504|gb|EHS32429.1| translation initiation factor IF-3, partial [Staphylococcus aureus
subsp. aureus IS-122]
Length = 169
Score = 71.6 bits (174), Expect = 9e-10, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++NDKI A+ +RL+ +G + V S+ EAL +A + DLV V A PPV +IMD+ K
Sbjct: 4 QINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNAKPPVARIMDYGKF 63
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ KEK+ K + I + KE+R S IE+ D Q K ++ + KG + K
Sbjct: 64 KFEQQKKEKEMKKKQKIINV-----KEIRLSPTIEEHDFQTKLKNGRKFLTKGDKCKVSI 118
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L + D +DI+ VE P ++ +Q + ++
Sbjct: 119 RFRGRAITHKEIGQRVLEKYADECKDIATVEQKPKMDGRQMFIML 163
>gi|222529195|ref|YP_002573077.1| translation initiation factor IF-3 [Caldicellulosiruptor bescii DSM
6725]
gi|222456042|gb|ACM60304.1| translation initiation factor IF-3 [Caldicellulosiruptor bescii DSM
6725]
Length = 171
Score = 71.6 bits (174), Expect = 9e-10, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I + VR++ + G + ++S EAL +A + DLV++ ANPPVCKIMD+ K K
Sbjct: 8 INEQIRDKEVRVIDENGVQLGIMSIKEALRIAEEKKLDLVKIAPHANPPVCKIMDYGKYK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++ KEK+ K + I + KE+R + IE+ D +K R + G +VK
Sbjct: 68 FELAKKEKEAKKNQKVINV-----KEIRLTTTIEEHDFNVKVKNAIRFLKDGDKVKVSIR 122
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++G +++ I+ I+D VVE P ++ K A+I
Sbjct: 123 FRGREVLHPEIGEEIINKFIEKIKDYGVVEKKPKLDGKNLTAVI 166
>gi|326800361|ref|YP_004318180.1| translation initiation factor IF-3 [Sphingobacterium sp. 21]
gi|326551125|gb|ADZ79510.1| Translation initiation factor IF-3 [Sphingobacterium sp. 21]
Length = 189
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 13/167 (7%)
Query: 82 RLNDKINAQFVRLV---LDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
R+N I A VRLV +++G V +ALA+A L+ DLVE+ ANPPVCK++D+ K
Sbjct: 23 RINQHIRAAEVRLVGENVEQG--VYPIKQALAIADELELDLVEISPNANPPVCKVVDYSK 80
Query: 139 EKYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
Y+++ K K+ +A AK + KE+RF + D + K + ++ G +V+
Sbjct: 81 FVYEQKKKLKEIKANAKQTV------IKEIRFGPNTNEHDFEFKLKHAIKFLEAGEKVRA 134
Query: 198 MALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D G L + +E+I VE P +E K+ + +
Sbjct: 135 YVHFKGRAIVYKDRGEILLLKFAQALEEIGKVELLPKLEGKRMFITV 181
>gi|291009827|ref|ZP_06567800.1| translation initiation factor IF3 protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 168
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 92 VRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKD 149
VRLV G +V V +AL LA+ DLVEV +A PPVCK+MD+ K KY+ K ++
Sbjct: 4 VRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVCKLMDYGKFKYESAQKARE 63
Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
+ + + KE + KI+ D + K V R + +G++VK + G+++
Sbjct: 64 SRRNQQQTVI-----KEQKLRPKIDPHDYETKKGHVSRFLGQGHKVKVTIMFRGREQSRP 118
Query: 210 DLG-GYLSRLIDLIEDISVVESGP 232
+LG L RL D + ++ +E+ P
Sbjct: 119 ELGFRLLQRLADDVSELGFIEANP 142
>gi|403387044|ref|ZP_10929101.1| translation initiation factor IF-3 [Clostridium sp. JC122]
Length = 165
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I + +R++ DEG + V++ EAL +A + DLV + A PPVCKIMDF K
Sbjct: 2 MNEDIREKEIRVITDEGEQLGVLTSKEALRIAEEKELDLVMISPNAKPPVCKIMDFGKFI 61
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K+K+ K + I++ KE+R S IE+ D+ +KA+ K+ + +VK
Sbjct: 62 YEQQKKDKEAKKKQKTISI-----KEIRLSATIEENDITIKANRAKKFLLDEDKVKVTVR 116
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ E +G L+ ++ + D+ +E E + I+
Sbjct: 117 FRGREIENSQVGHKILNSFVEKLGDVYTIEKPAKQEGRNMILIL 160
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,028,302,990
Number of Sequences: 23463169
Number of extensions: 411319474
Number of successful extensions: 1299402
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2935
Number of HSP's successfully gapped in prelim test: 2570
Number of HSP's that attempted gapping in prelim test: 1280088
Number of HSP's gapped (non-prelim): 11080
length of query: 536
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 388
effective length of database: 8,886,646,355
effective search space: 3448018785740
effective search space used: 3448018785740
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 79 (35.0 bits)