BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009379
(536 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6Q167|IF3_NITSB Translation initiation factor IF-3 OS=Nitratiruptor sp. (strain
SB155-2) GN=infC PE=3 SV=1
Length = 177
Score = 94.0 bits (232), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++I+A VR V D+G + +VSR EAL +A DLV + ANPPVCKIMD+ K K
Sbjct: 10 LNEQIDAPEVRCVGDDGTQYGIVSRDEALKIAEQKGLDLVLIAPNANPPVCKIMDYGKFK 69
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K K+ K ++ I + KE++ S KI Q D+ K + ++KG VK
Sbjct: 70 YQQEKKLKEAKKKQTKI-----EVKEIKLSVKIAQNDIDYKVKHAREFLEKGKHVKFRVF 124
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ + G L ++I LIEDI VVE PH+E
Sbjct: 125 LRGREMAHPEAGVEVLEKIIPLIEDIGVVEKKPHLE 160
>sp|A1UUD5|IF3_BARBK Translation initiation factor IF-3 OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=infC PE=3 SV=1
Length = 173
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N +I ++L+ DEG +VS EALA+A ++ DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQEIRVPCIQLINDEGQNQGIVSTQEALAMAANIGLDLVEIVPNAEPPVCKIV 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K + R ++ G +
Sbjct: 65 DLGKLKYQNQKKAAETRKKQKII-----EIKEIKLRPNVDVHDYGVKLKAIHRFIEHGNK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + + +I+ +ES P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGVKLLERMKEDVSEIAKIESEPKLENRQMMMVI 169
>sp|Q39VS8|IF3_GEOMG Translation initiation factor IF-3 OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=infC PE=3 SV=2
Length = 172
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLV--LDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A+ +R+V E ++ +EALALA S Q DLVEV A PPVC+IMD+ K K
Sbjct: 8 VNQAIRAREIRVVGANSEQLGIMPLNEALALAESQQLDLVEVSPTAVPPVCRIMDYGKFK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K ++ K +S + + KEV+ K ++ DLQ K V+R +++G + K +
Sbjct: 68 YQQSKKLQEAKKKQSHVVV-----KEVKLRPKTDEHDLQFKIKHVRRFIEEGNKAKVTLV 122
Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L R+ IEDI+V+E P +E + + I+
Sbjct: 123 FRGREITHMEFGVRALERVASEIEDIAVIEMKPKMEGRSMFMIV 166
>sp|Q5WEI6|IF3_BACSK Translation initiation factor IF-3 OS=Bacillus clausii (strain
KSM-K16) GN=infC PE=3 SV=1
Length = 167
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRLV G + V S+HEAL +A+ + DLV V A PPVC+IMD+ K +
Sbjct: 3 VNEGIRAREVRLVGANGDQIGVKSKHEALEMAQRVNLDLVCVAPNAKPPVCRIMDYGKYR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ KEK+ K + IT+ KEVR S IE D K ++ ++KG +VK
Sbjct: 63 YEQQKKEKEARKNQKVITI-----KEVRLSPTIEANDFNTKLRNARKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +G L RL EDI+ +E+ P +E + + ++
Sbjct: 118 FRGRAITHSQIGRDVLERLAKECEDIATIEARPKMEGRSMFLVM 161
>sp|A1KSY3|IF3_NEIMF Translation initiation factor IF-3 OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=infC PE=3 SV=1
Length = 173
Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K
Sbjct: 9 RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ K++D AK K+ KE++F ++ D Q+K + R + G +VK
Sbjct: 69 KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173
>sp|P65138|IF3_NEIMB Translation initiation factor IF-3 OS=Neisseria meningitidis
serogroup B (strain MC58) GN=infC PE=3 SV=1
Length = 173
Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K
Sbjct: 9 RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ K++D AK K+ KE++F ++ D Q+K + R + G +VK
Sbjct: 69 KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173
>sp|P65137|IF3_NEIMA Translation initiation factor IF-3 OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=infC PE=3
SV=1
Length = 173
Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K
Sbjct: 9 RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ K++D AK K+ KE++F ++ D Q+K + R + G +VK
Sbjct: 69 KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173
>sp|Q5F9U3|IF3_NEIG1 Translation initiation factor IF-3 OS=Neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090) GN=infC PE=3 SV=1
Length = 173
Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A+ VRL+ + G + VVS EALA+A DLVE+ A PPVCK+MD+ K
Sbjct: 9 RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ+ K++D AK K+ KE++F ++ D Q+K + R + G +VK
Sbjct: 69 KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
G++ + LG L R+ + + +++ +ES P +E +Q +I P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173
>sp|Q828D2|IF3_STRAW Translation initiation factor IF-3 OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=infC PE=3 SV=1
Length = 241
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 10 STEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMD 69
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 70 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL +ED+ VES P + + ++ GP KK
Sbjct: 125 KITIMFRGREQSRPELGYRLLQRLATDVEDLGFVESSPKQDGRNMIMVL-----GPHKK 178
>sp|Q70YI5|IF3_THETH Translation initiation factor IF-3 OS=Thermus thermophilus GN=infC
PE=3 SV=1
Length = 171
Score = 85.5 bits (210), Expect = 9e-16, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 84 NDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
N++I A+ VR+V +G + ++ EAL LA+ + DLV V A+PPV +IMD+ K +Y
Sbjct: 7 NERIRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRY 66
Query: 142 QKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ EK+ R KA K+ + K ++F KI++ D Q K +KR + +G++VK +
Sbjct: 67 EQQMAEKEARKKA------KRTEVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIM 120
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G++ +LG L+R+ + ++D++VVE P + + ++ VK
Sbjct: 121 FRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNMLLAPVK 168
>sp|Q5SKU2|IF3_THET8 Translation initiation factor IF-3 OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=infC PE=1 SV=2
Length = 171
Score = 85.5 bits (210), Expect = 9e-16, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 84 NDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
N++I A+ VR+V +G + ++ EAL LA+ + DLV V A+PPV +IMD+ K +Y
Sbjct: 7 NERIRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRY 66
Query: 142 QKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ EK+ R KA K+ + K ++F KI++ D Q K +KR + +G++VK +
Sbjct: 67 EQQMAEKEARKKA------KRTEVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIM 120
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G++ +LG L+R+ + ++D++VVE P + + ++ VK
Sbjct: 121 FRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNMLLAPVK 168
>sp|Q9ACJ8|IF3_THET2 Translation initiation factor IF-3 OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=infC PE=3 SV=1
Length = 171
Score = 85.5 bits (210), Expect = 9e-16, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 84 NDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
N++I A+ VR+V +G + ++ EAL LA+ + DLV V A+PPV +IMD+ K +Y
Sbjct: 7 NERIRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRY 66
Query: 142 QKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ EK+ R KA K+ + K ++F KI++ D Q K +KR + +G++VK +
Sbjct: 67 EQQMAEKEARKKA------KRTEVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIM 120
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
G++ +LG L+R+ + ++D++VVE P + + ++ VK
Sbjct: 121 FRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNMLLAPVK 168
>sp|Q74D03|IF3_GEOSL Translation initiation factor IF-3 OS=Geobacter sulfurreducens
(strain ATCC 51573 / DSM 12127 / PCA) GN=infC PE=3 SV=1
Length = 172
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N I A+ VR+V + + ++S EALALA + Q DLVEV A PPVC+IMD+ K K
Sbjct: 8 INQAIRAREVRVVGADSEQLGIMSLQEALALAEARQLDLVEVSPTAVPPVCRIMDYGKFK 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+ K ++ K +S + KEV+ K ++ DL K V+R +++G + K +
Sbjct: 68 YQQSKKLQEARKKQSHV-----QVKEVKLRPKTDEHDLMTKIKHVRRFIEEGNKAKVTLV 122
Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ + G L R+ +EDI+VVE P +E + + I+
Sbjct: 123 FRGREITHLEFGSRALDRVAAELEDIAVVEFKPKMEGRSMFMIV 166
>sp|O88060|IF3_STRCO Translation initiation factor IF-3 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=infC PE=3 SV=1
Length = 217
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 78 TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
++ PR+ND+I VRLV G +V V +AL LA+ DLVEV A PPVCK+MD
Sbjct: 2 SAEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMD 61
Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
+ K KY+ +K ++ K ++ + KE++ KI+ D K V R + +G +V
Sbjct: 62 YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 116
Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
K + G+++ +LG L RL + + D+ VES P + + ++ GP KK
Sbjct: 117 KITIMFRGREQSRPELGYRLLQRLAEDVADLGFVESNPKQDGRNMIMVL-----GPHKK 170
>sp|Q9K867|IF3_BACHD Translation initiation factor IF-3 OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=infC PE=3 SV=3
Length = 171
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+ I A+ VRL+ G + V S+ EAL +AR++ DLV V A PPVC+IMD+ K +
Sbjct: 7 VNEGIRAREVRLIGANGDQIGVKSKAEALDMARNVNLDLVCVAPNAKPPVCRIMDYGKYR 66
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
Y+++ K+K+ K + I + KEVR S IE D K ++ + KG +VK
Sbjct: 67 YEQQKKDKEARKKQKTINV-----KEVRLSPTIEDHDFNTKLRNARKFLSKGDKVKAAIR 121
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++G L RL EDI++VE+ P +E + + ++
Sbjct: 122 FRGRAITHSEIGRNVLERLAKECEDIAIVEAKPKMEGRSMFLVL 165
>sp|Q8EPF5|IF3_OCEIH Translation initiation factor IF-3 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=infC PE=3 SV=2
Length = 172
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N+KI A+ VRL+ G + V SR EAL +A + DLV V A PPVC+IMD+ K +
Sbjct: 7 VNEKIRAREVRLIDSNGDQLGVKSRQEALDIATTRNLDLVLVAPNAKPPVCRIMDYGKYR 66
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVRF+ I D + K ++ ++KG +VK
Sbjct: 67 FEQQKKEKEARKKQKVI-----NVKEVRFTPGIGDHDFETKLKNARKFLEKGDKVKAAVR 121
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ ++LG L R + ++D+ +E+ P +E + + ++
Sbjct: 122 FRGRAITHKELGREVLDRFAEEVKDLGTIETKPKMEGRNMFMMV 165
>sp|Q8P7Z3|IF3_XANCP Translation initiation factor IF-3 OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=infC PE=3 SV=1
Length = 182
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V +SR EALA A DLVE+ +A+PPVCKIMDF K
Sbjct: 17 RKNQEIRVPRVRVIGSDGEMVGVLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKF 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ K+ + AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK
Sbjct: 77 KFEQQ-KKANEAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNI 131
Query: 200 LPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I DL EDI V+ES P +E +Q +I
Sbjct: 132 RFRGREMSHQELGREMAARIEADLGEDI-VIESRPRLEGRQMVMMI 176
>sp|Q6G570|IF3_BARHE Translation initiation factor IF-3 OS=Bartonella henselae (strain
ATCC 49882 / Houston 1) GN=infC PE=3 SV=1
Length = 172
Score = 82.0 bits (201), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR N I V+L+ DEG VV+ EALA+A + DLVE+ A PPVCKI+D
Sbjct: 8 GPRANQDIRVPRVQLINDEGQHQGVVTIQEALAMAAEVGLDLVEIVPNAEPPVCKIIDLG 67
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KYQ + K + K + I + KE++ ++ D +K + R + G +VK
Sbjct: 68 KLKYQTQKKAAETRKKQKVIEI-----KEIKMRPNVDVHDYGVKLKAIHRFIGNGDKVKI 122
Query: 198 MALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ +DLG L R+ + +I+ +ES P +E +Q +I
Sbjct: 123 TLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIESEPKLEGRQMMMVI 169
>sp|A9ILC8|IF3_BART1 Translation initiation factor IF-3 OS=Bartonella tribocorum (strain
CIP 105476 / IBS 506) GN=infC PE=3 SV=1
Length = 172
Score = 81.6 bits (200), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG VVS EALA+A DLVE+ A PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPHVQLINDEGQHQGVVSIQEALAMAAEAGLDLVEIVPNAEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D +K + R +D G +
Sbjct: 65 DLGKLKYQTQKKAAETRKKQKVIEI-----KEIKVRPNVDVHDYGVKLKAIHRFIDHGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +E P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIELEPKLEGRQMMMVI 169
>sp|P03000|IF3_GEOSE Translation initiation factor IF-3 OS=Geobacillus
stearothermophilus GN=infC PE=1 SV=2
Length = 172
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRL+ G + + S+ EAL +A DLV V A PPVC+IMD+ K +
Sbjct: 7 INEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFR 66
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK+ K + I + KEVR S IE+ D K ++ ++KG +VK
Sbjct: 67 FEQQKKEKEARKKQKVINV-----KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIR 121
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L RL + DI+VVE+ P ++ + + ++
Sbjct: 122 FKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFLVL 165
>sp|Q8PJE2|IF3_XANAC Translation initiation factor IF-3 OS=Xanthomonas axonopodis pv.
citri (strain 306) GN=infC PE=3 SV=1
Length = 182
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V +SR EALA A DLVE+ +A+PPVCKIMDF K
Sbjct: 17 RKNQEIRVPRVRVIGSDGEMVGVLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKF 76
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ K+ + AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK
Sbjct: 77 KFEQQ-KKANEAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNI 131
Query: 200 LPVGKKEETEDLGGYLSRLI--DLIEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I DL +DI V+ES P +E +Q +I
Sbjct: 132 RFRGREMSHQELGREMAARIEADLGDDI-VIESRPRLEGRQMVMMI 176
>sp|Q5LQ58|IF3_RUEPO Translation initiation factor IF-3 OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=infC PE=3 SV=1
Length = 182
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 79 SGPRLNDKINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCKIMDF 136
+GPR+NDKI A +RL+ +G V H +A+A+A DLVE+ A PPVCKIMDF
Sbjct: 14 TGPRVNDKIRASEIRLIGADGENVGVVHPAKAMAMAEEAGLDLVEISPNATPPVCKIMDF 73
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K KY+++ +E + A+ K I + KEV+F + D ++K V + ++ G +VK
Sbjct: 74 GKYKYEQQKRESE-ARKKQKII----EVKEVKFRPNTDTHDYEVKMRNVYKFLENGDKVK 128
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L R+ + ++++ +E+ P +E +Q +I
Sbjct: 129 VTLRFRGREMAHQNLGRELLERVAEDVKEMGKIENMPKMEGRQMIMMI 176
>sp|Q7VJ08|IF3_HELHP Translation initiation factor IF-3 OS=Helicobacter hepaticus
(strain ATCC 51449 / 3B1) GN=infC PE=3 SV=1
Length = 174
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LN++I+ + VR V D G + ++S EAL LA DLV + A PPVCKIMD+ K +
Sbjct: 8 LNEEIDFKEVRCVSDNGEVYGIISSKEALNLAHKAGLDLVLISPNAKPPVCKIMDYGKFR 67
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ E K+K+ K + I + KE++ S +I Q D+ K ++ G VK
Sbjct: 68 YQAEKKQKEARKKQKQIEI-----KEIKLSTQIAQNDINYKVKHAIEFLESGKHVKFKVF 122
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
++ D G L ++ ++EDI++ E P +E K +V + P KK
Sbjct: 123 LKQRELNIPDAGMDTLGKVAVMLEDIAIAEKEPKLEGKHL-----NVLYVPKKK 171
>sp|Q812P6|IF3_BACCR Translation initiation factor IF-3 OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=infC PE=3 SV=1
Length = 167
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S VES P +E + + ++
Sbjct: 118 FKGRAITHKEIGQRVLDRFSEACAEVSTVESKPKMEGRSMFLVL 161
>sp|Q6G1I3|IF3_BARQU Translation initiation factor IF-3 OS=Bartonella quintana (strain
Toulouse) GN=infC PE=3 SV=1
Length = 172
Score = 80.1 bits (196), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
+ GPR N I V+L+ DEG VV+ EALA+A + DLVE+ PPVCKI+
Sbjct: 5 QKDGPRSNQDIRVPCVQLINDEGQHQGVVATQEALAMAAEVGLDLVEIVPNTEPPVCKII 64
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D K KYQ + K + K + I + KE++ ++ D ++K + R + G +
Sbjct: 65 DLGKLKYQTQKKAAEIRKKQKVIEI-----KEIKMRPNVDVHDYEVKLKAIHRFIGNGDK 119
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +DLG L R+ + +I+ +E+ P +E +Q +I
Sbjct: 120 VKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIEAEPKLEGRQMMMVI 169
>sp|Q633M1|IF3_BACCZ Translation initiation factor IF-3 OS=Bacillus cereus (strain ZK /
E33L) GN=infC PE=3 SV=2
Length = 167
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 118 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 161
>sp|Q72ZG2|IF3_BACC1 Translation initiation factor IF-3 OS=Bacillus cereus (strain ATCC
10987) GN=infC PE=3 SV=2
Length = 167
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 118 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 161
>sp|Q81L15|IF3_BACAN Translation initiation factor IF-3 OS=Bacillus anthracis GN=infC
PE=3 SV=2
Length = 167
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+N++I A+ VRLV G + + SR++AL LA +L DLV V A PPVC+IMD+ K +
Sbjct: 3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 62
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ KEK++ K + I++ KEVR S I++ D K + ++KG +VK
Sbjct: 63 FEQQKKEKEQRKNQKVISM-----KEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117
Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +++G L R + ++S +ES P +E + + ++
Sbjct: 118 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 161
>sp|O84840|IF3_CHLTR Translation initiation factor IF-3 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=infC PE=3 SV=2
Length = 175
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A VR++ G + ++S EAL LA+ DLVEV + PPVCKIMD+ K
Sbjct: 6 RINRQIRAPRVRVIGSAGEQLGILSIKEALDLAKEANLDLVEVASNSEPPVCKIMDYGKY 65
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
+Y KEKD KA+ + + KEV+ I+ D KA + ++KG +VK
Sbjct: 66 RYDVTKKEKDSKKAQHQVRI-----KEVKLKPNIDDNDFLTKAKQARAFIEKGNKVKVSC 120
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +EDI VES P + + +I
Sbjct: 121 MFRGRELAYPEHGYKVIQRMCQGLEDIGFVESEPKLNGRSLICVI 165
>sp|Q9PFE1|IF3_XYLFA Translation initiation factor IF-3 OS=Xylella fastidiosa (strain
9a5c) GN=infC PE=3 SV=2
Length = 180
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 99/165 (60%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V +SR EALA+A DLVE+ +A+PPVCK+M+F K
Sbjct: 15 RKNHEIRVPRVRVIGSDGEMVGVLSRDEALAMAEKEGLDLVEIQPQADPPVCKVMNFGKF 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ K+ + AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK
Sbjct: 75 KFEQQ-KKANEAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKINI 129
Query: 200 LPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I++ + D V+ES P +E +Q ++
Sbjct: 130 RFRGREMSHQELGRQMATRIEMDLGDDVVIESRPRLEGRQMVMMV 174
>sp|Q3ANG8|IF3_SYNSC Translation initiation factor IF-3 OS=Synechococcus sp. (strain
CC9605) GN=infC PE=3 SV=1
Length = 217
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+SR EAL +AR + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPQLRVVDSDGAQLGVISREEALDVARDRELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+Q D ++ +R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + L L R+ +E+ + ++ P E
Sbjct: 132 VIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKRE 169
>sp|Q87AB3|IF3_XYLFT Translation initiation factor IF-3 OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=infC PE=3 SV=1
Length = 180
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 99/165 (60%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I VR++ +G V+SR EALA+A DLVE+ +A+PPVCK+M+F K
Sbjct: 15 RKNHEIRVPRVRVIGSDGEMIGVLSRDEALAMAEKEGLDLVEIQPQADPPVCKVMNFGKF 74
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
K++++ K+ + AK K+ K+ + KE++F ++ D Q+K ++R +++G +VK
Sbjct: 75 KFEQQ-KKANEAKKKT----KQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKINI 129
Query: 200 LPVGKKEETEDLGGYLSRLIDL-IEDISVVESGPHVERKQAYAII 243
G++ ++LG ++ I++ + D V+ES P +E +Q ++
Sbjct: 130 RFRGREMSHQELGRQMAARIEMDLGDDVVIESRPRLEGRQMVMMV 174
>sp|A7IGN8|IF3_XANP2 Translation initiation factor IF-3 OS=Xanthobacter autotrophicus
(strain ATCC BAA-1158 / Py2) GN=infC PE=3 SV=1
Length = 174
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 96/170 (56%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E GPR+N++I + V+L+ +G VV+ +AL LA+ DLVE+ + PPVCKI+
Sbjct: 7 EKDGPRVNEEIRIREVQLIDQDGQNRGVVAIRDALTLAQEAGLDLVEISPNSAPPVCKIL 66
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
D+ + KYQ + K+ A+ K + + KE++ I+ D ++K +++R ++G +
Sbjct: 67 DYGRFKYQNQ-KKASEARKKQKVV----EVKEIKLRPGIDTHDYEVKMRSMERFFEEGDK 121
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +D+G L +L + + I+ VE+ P +E +Q I+
Sbjct: 122 VKVTLRFRGREMAHQDIGFKLLQKLKEDVAAIAKVEAEPMLEGRQMIMIL 171
>sp|Q1IY80|IF3_DEIGD Translation initiation factor IF-3 OS=Deinococcus geothermalis
(strain DSM 11300) GN=infC PE=3 SV=1
Length = 204
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 89/155 (57%), Gaps = 10/155 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + +RL+ EG ++ + +ALA+AR DLV V +A PPVC+++D+ +
Sbjct: 9 KVNEQIRVRQIRLIGAEGEQIGIIDTRDALAMAREKGLDLVMVSPQAVPPVCRLLDYGRF 68
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ EK+ R +A++ + K ++F KI+ D K V+R +++G++VK
Sbjct: 69 RYEQQQNEKENRKRARAQ------EVKAIKFRVKIDDHDFNTKTGHVRRFLEEGHKVKVT 122
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + + DI E P
Sbjct: 123 IMFRGRERTHPELGERILHRVAETLADIGAPEGMP 157
>sp|Q9RSN7|IF3_DEIRA Translation initiation factor IF-3 OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=infC PE=3
SV=1
Length = 212
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 89/155 (57%), Gaps = 10/155 (6%)
Query: 82 RLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
++N++I + VRL+ EG ++ + EA+ +AR DLV V +A PPVC+++D+ +
Sbjct: 9 KVNEQIRVRQVRLIGAEGEQIGIIDTREAMNMAREKSLDLVMVSPQAVPPVCRLLDYGRF 68
Query: 140 KYQKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
+Y+++ EK+ R +A+S + K ++F KI+ D + K V+R +++G++VK
Sbjct: 69 RYEQQQNEKENRKRARSQ------EVKAIKFRVKIDDNDFKTKTGHVRRFLNEGHKVKVT 122
Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP 232
+ G++ +LG L R+ + + D+ E P
Sbjct: 123 IMFRGRERTHPELGERILVRVAETLADVGAPEGNP 157
>sp|A8HWL0|IF3_AZOC5 Translation initiation factor IF-3 OS=Azorhizobium caulinodans
(strain ATCC 43989 / DSM 5975 / ORS 571) GN=infC PE=3
SV=1
Length = 174
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 77 ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
E GPR+N++I + V+L+ +G V+ +AL LA+ DLVE+ ++PPVCKI+
Sbjct: 7 EKDGPRVNEEIRIREVQLIDQDGQNRGVLPTRDALLLAQEAGLDLVEISPNSSPPVCKIL 66
Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
DF + KYQ + K+ A+ K + + KE++ I+ D +K + R ++G +
Sbjct: 67 DFGRFKYQNQ-KKASEARKKQKVV----EVKEIKLRPGIDTHDYDVKMKAMLRFFEEGDK 121
Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
VK G++ +D+G L +L + + +I+ VE+ P +E +Q I+
Sbjct: 122 VKVTLRFRGREMAHQDIGYKLLQKLKEDVTNIAKVEAEPMLEGRQMIMIL 171
>sp|A7HPJ7|IF3_PARL1 Translation initiation factor IF-3 OS=Parvibaculum lavamentivorans
(strain DS-1 / DSM 13023 / NCIMB 13966) GN=infC PE=3
SV=1
Length = 173
Score = 77.0 bits (188), Expect = 3e-13, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 8/167 (4%)
Query: 80 GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
GPR+ND I+ V L+ EG K V+ EA+ +A DLVEV A PPVCK++D+
Sbjct: 9 GPRINDMIDEPTVLLIDAEGEKRGVIPTDEAIRMAEEAGLDLVEVSPNAKPPVCKLLDYG 68
Query: 138 KEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC 197
K KYQ + K + K + + + KE++ I+ D ++K + R ++G +VK
Sbjct: 69 KFKYQAQKKANEARKKQKTV-----EVKEIKMRPNIDTHDYEVKMRAMLRFFEEGDKVKV 123
Query: 198 MALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
G++ ++LG L+++ + +E I+ VE P +E +Q ++
Sbjct: 124 TLRFRGREMAHQELGMVLLNKVKEEVEPIAKVELYPRLEGRQMIMVL 170
>sp|Q8XZ28|IF3_RALSO Translation initiation factor IF-3 OS=Ralstonia solanacearum
(strain GMI1000) GN=infC PE=3 SV=1
Length = 178
Score = 77.0 bits (188), Expect = 3e-13, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R+N +I A +RL EG + +V +AL LA DLVE+ A PPVC++MD+ K
Sbjct: 13 RINREITAPEIRLTGVEGEQLGIVKLFDALRLAEEKDVDLVEIAPTAQPPVCRLMDYGKF 72
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KYQ E K+ AK K + KEV+F + D ++K +KR +D+G R K
Sbjct: 73 KYQ-EQKKAHEAKLKQKVI----QVKEVKFRPGTDDGDYEVKLRNLKRFLDEGDRTKITL 127
Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQ 238
G++ +++G L RL +E+ VE P +E +Q
Sbjct: 128 RFRGREMAHQEIGARMLDRLKTDLEEFGQVEQMPKMEGRQ 167
>sp|Q9PL86|IF3_CHLMU Translation initiation factor IF-3 OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=infC PE=3 SV=1
Length = 186
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 83 LNDKINAQF----VRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDF 136
LN KIN Q VR++ G + ++S EAL LAR DLVEV + PPVCKIMD+
Sbjct: 3 LNLKINRQIRAPRVRVIGSSGEQLGILSIKEALDLAREADLDLVEVASNSEPPVCKIMDY 62
Query: 137 HKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVK 196
K +Y KEKD KA+ + + KEV+ I+ D K + ++KG +VK
Sbjct: 63 GKYRYDVTKKEKDSKKAQHQVRV-----KEVKLKPNIDDNDFLTKVKQARAFIEKGNKVK 117
Query: 197 CMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ + G + R+ +ED+ VES P + + +I
Sbjct: 118 VSCMFRGRELAYPEHGHKVVQRMCQGLEDVGFVESEPKLNGRSLICVI 165
>sp|P0A3K9|IF3_BRUSU Translation initiation factor IF-3 OS=Brucella suis biovar 1
(strain 1330) GN=infC PE=3 SV=1
Length = 178
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 62 FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDL 119
F A PVQ GPR N I V+L+ EG H VS EA+A+A DL
Sbjct: 5 FRATPVQ---------KDGPRSNRDIRVPRVQLIDAEGQNHGDVSIQEAMAMAEEAGLDL 55
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
VE+ A PPVCKI+D K KYQ + K + K + + + KE++ I+ D +
Sbjct: 56 VEIVPNAEPPVCKIVDLGKLKYQNQKKAAEARKKQKTV-----EIKEIKMRPNIDTHDYE 110
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
+K +R ++G +VK G++ ++LG L R+ + +I+ VES P +E +Q
Sbjct: 111 VKMKAAQRFFEEGDKVKVTLRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQ 170
Query: 239 AYAII 243
++
Sbjct: 171 MMMVL 175
>sp|P0A3K8|IF3_BRUME Translation initiation factor IF-3 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=infC PE=3 SV=1
Length = 178
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 62 FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDL 119
F A PVQ GPR N I V+L+ EG H VS EA+A+A DL
Sbjct: 5 FRATPVQ---------KDGPRSNRDIRVPRVQLIDAEGQNHGDVSIQEAMAMAEEAGLDL 55
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
VE+ A PPVCKI+D K KYQ + K + K + + + KE++ I+ D +
Sbjct: 56 VEIVPNAEPPVCKIVDLGKLKYQNQKKAAEARKKQKTV-----EIKEIKMRPNIDTHDYE 110
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
+K +R ++G +VK G++ ++LG L R+ + +I+ VES P +E +Q
Sbjct: 111 VKMKAAQRFFEEGDKVKVTLRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQ 170
Query: 239 AYAII 243
++
Sbjct: 171 MMMVL 175
>sp|P0A3L0|IF3_BRUAB Translation initiation factor IF-3 OS=Brucella abortus biovar 1
(strain 9-941) GN=infC PE=3 SV=1
Length = 178
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 62 FFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDL 119
F A PVQ GPR N I V+L+ EG H VS EA+A+A DL
Sbjct: 5 FRATPVQ---------KDGPRSNRDIRVPRVQLIDAEGQNHGDVSIQEAMAMAEEAGLDL 55
Query: 120 VEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQ 179
VE+ A PPVCKI+D K KYQ + K + K + + + KE++ I+ D +
Sbjct: 56 VEIVPNAEPPVCKIVDLGKLKYQNQKKAAEARKKQKTV-----EIKEIKMRPNIDTHDYE 110
Query: 180 MKADTVKRLMDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQ 238
+K +R ++G +VK G++ ++LG L R+ + +I+ VES P +E +Q
Sbjct: 111 VKMKAAQRFFEEGDKVKVTLRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQ 170
Query: 239 AYAII 243
++
Sbjct: 171 MMMVL 175
>sp|B5RR09|IF3_BORRA Translation initiation factor IF-3 OS=Borrelia recurrentis (strain
A1) GN=infC PE=3 SV=1
Length = 186
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N +I A+ VR++ ++G V+ +A+ AR ++ DLVE+ A PPVCKI+D+ K K
Sbjct: 21 RINHRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLVEISPNALPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K + + +G +VK
Sbjct: 81 FHQEKRQKEQRKNQKIIKL-----KEVRMQPKIDTHDLDFKYKNILGFLKEGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L +++ + D + V+ES +E K + II
Sbjct: 136 FRGRELAHTHLGYGILESILERVGDSNYVLESPAKMEGKTMFLII 180
>sp|B5RL16|IF3_BORDL Translation initiation factor IF-3 OS=Borrelia duttonii (strain Ly)
GN=infC PE=3 SV=1
Length = 186
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEG-HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
R+N +I A+ VR++ ++G V+ +A+ AR ++ DLVE+ A PPVCKI+D+ K K
Sbjct: 21 RINHRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLVEISPNALPPVCKIIDYGKYK 80
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
+ +E ++K++ K + I L KEVR KI+ DL K + + +G +VK
Sbjct: 81 FHQEKRQKEQRKNQKIIKL-----KEVRMQPKIDTHDLDFKYKNILGFLKEGNKVKVTIR 135
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDIS-VVESGPHVERKQAYAII 243
G++ LG G L +++ + D + V+ES +E K + II
Sbjct: 136 FRGRELAHTHLGYGILESILERVGDSNYVLESPAKMEGKTMFLII 180
>sp|B4UAN5|IF3_ANASK Translation initiation factor IF-3 OS=Anaeromyxobacter sp. (strain
K) GN=infC PE=3 SV=1
Length = 232
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR++ EG + V+ +ALA A+ L DLVEV A PPVCKIMD+ +
Sbjct: 18 RTNRRIKAREVRVIGAEGEQLGVLPIDQALARAQELGMDLVEVSPMAKPPVCKIMDYGRF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY ++ K+ + K + + L KEV+ + E+ D K V+ + + + +
Sbjct: 78 KYLEKKKQNEAKKKQVVVQL-----KEVKLRPRTEEHDYDTKIKKVRAFLGEANKARITV 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+I+ + D++V+ES P +E +Q + I+
Sbjct: 133 MFRGREMSHRELGQKVLQRVIEDLRDVAVIESAPRMEGRQMFMIL 177
>sp|B8J830|IF3_ANAD2 Translation initiation factor IF-3 OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=infC PE=3 SV=1
Length = 230
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR++ EG + V+ +ALA A+ L DLVEV A PPVCKIMD+ +
Sbjct: 18 RTNRRIKAREVRVIGAEGEQLGVLPIDQALARAQELGMDLVEVSPMAKPPVCKIMDYGRF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY ++ K+ + K + + L KEV+ + E+ D K V+ + + + +
Sbjct: 78 KYLEKKKQNEAKKKQVVVQL-----KEVKLRPRTEEHDYDTKIKKVRAFLGEANKARITV 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+I+ + D++V+ES P +E +Q + I+
Sbjct: 133 MFRGREMSHRELGQKVLQRVIEDLRDVAVIESAPRMEGRQMFMIL 177
>sp|Q2IJB8|IF3_ANADE Translation initiation factor IF-3 OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=infC PE=3 SV=1
Length = 233
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 82 RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
R N +I A+ VR++ EG + V+ +ALA A+ L DLVEV A PPVCKIMD+ +
Sbjct: 18 RTNRRIKAREVRVIGAEGEQLGVLPIDQALARAQELGMDLVEVSPMAKPPVCKIMDYGRF 77
Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
KY ++ K+ + K + + L KEV+ + E+ D K V+ + + + +
Sbjct: 78 KYLEKKKQNEAKKKQVVVQL-----KEVKLRPRTEEHDYDTKIKKVREFLAEANKARITV 132
Query: 200 LPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
+ G++ +LG L R+I+ + D++V+ES P +E +Q + I+
Sbjct: 133 MFRGREMSHRELGQKVLQRVIEDLRDVAVIESAPRMEGRQMFMIL 177
>sp|Q88WU8|IF3_LACPL Translation initiation factor IF-3 OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=infC PE=3
SV=1
Length = 173
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
+ND I A+ VRL+ +G + V SR EA+ +A DLV V KA PPV +IMD+ K +
Sbjct: 9 VNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
++++ K+++ K + +++ KEVR S I+ D K ++ + KG +V+
Sbjct: 69 FEQQKKDREARKKQKVVSI-----KEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIR 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
G+ +D+G L+R+I+ ++ S VE+ P ++ + + ++
Sbjct: 124 FKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVL 167
>sp|A5GQ34|IF3_SYNR3 Translation initiation factor IF-3 OS=Synechococcus sp. (strain
RCC307) GN=infC PE=3 SV=1
Length = 215
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 81 PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
P +ND+IN +R+V +G + V+SR EAL +AR + DLV V KA+PPVC+IMD+ K
Sbjct: 17 PNINDRINYPKLRVVDADGTQLGVISRDEALDVARERELDLVLVSEKADPPVCRIMDYGK 76
Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
K+ E+++ ++ + + KEV+ KI+ D Q++ R + G +VKC
Sbjct: 77 FKF-----EQEKKAKEAKKKSHQTEVKEVKMRYKIDAHDYQVRIGQAVRFLKAGDKVKCT 131
Query: 199 ALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
+ G++ + L L R+ +E+ + V+ P E
Sbjct: 132 VIFRGREIQHTALAEKLLMRMAKDLEESAEVQQPPKRE 169
>sp|B9KEB2|IF3_CAMLR Translation initiation factor IF-3 OS=Campylobacter lari (strain
RM2100 / D67 / ATCC BAA-1060) GN=infC PE=3 SV=1
Length = 173
Score = 75.5 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Query: 83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
LND+I A +R + D+G + ++S EAL +A L DLV + +A PPVCKIMD+ K +
Sbjct: 9 LNDEIQADEIRCIGDDGKVYGIISSDEALDIANRLGLDLVMIAPEAKPPVCKIMDYGKFR 68
Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
YQ+E K+K+ K + I D KE++ S KI Q D+ K +++G VK
Sbjct: 69 YQQEKKQKEAKKKQKVI-----DIKEIKLSVKIAQNDINYKVKHASEFLEQGKHVKFRVF 123
Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
G++ + + G L ++ ++EDI+ + P +E
Sbjct: 124 LKGREMGSPEAGVALLEKIWQMVEDIADRDKEPLLE 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,767,052
Number of Sequences: 539616
Number of extensions: 9879270
Number of successful extensions: 31545
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 492
Number of HSP's that attempted gapping in prelim test: 29957
Number of HSP's gapped (non-prelim): 1553
length of query: 536
length of database: 191,569,459
effective HSP length: 122
effective length of query: 414
effective length of database: 125,736,307
effective search space: 52054831098
effective search space used: 52054831098
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)