BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009380
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 25/246 (10%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP---ISGIVTQQ 292
R+T +++ P + V GSK G+I W+ D Q F +GP I+G+ Q
Sbjct: 74 RVTSLEWHPTHPTTVAV-GSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQ 127
Query: 293 YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-------SLSQQPNNVNTLYFGEG 345
+ +++F S G L D V + ++ + S+S+Q L G+
Sbjct: 128 FNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ-----MLATGDS 182
Query: 346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
G L + + + E LH+A++ +FNPR +MATSS D T +WDLR++ DK
Sbjct: 183 TGRLLLLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-DKN 240
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWIS 463
+ + H++ V++AYF+P+ S+ L TT + I ++S ++ +I H ++ + ++
Sbjct: 241 SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 300
Query: 464 SFRAIW 469
+A W
Sbjct: 301 PIKATW 306
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 25/246 (10%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP---ISGIVTQQ 292
R+T +++ P + V GSK G+I W+ D Q F +GP I+G+ Q
Sbjct: 75 RVTSLEWHPTHPTTVAV-GSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQ 128
Query: 293 YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-------SLSQQPNNVNTLYFGEG 345
+ +++F S G L D V + ++ + S+S+Q L G+
Sbjct: 129 FNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ-----MLATGDS 183
Query: 346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
G L + + + E LH+A++ +FNPR +MATSS D T +WDLR++ DK
Sbjct: 184 TGRLLLLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-DKN 241
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWIS 463
+ + H++ V++AYF+P+ S+ L TT + I ++S ++ +I H ++ + ++
Sbjct: 242 SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301
Query: 464 SFRAIW 469
+A W
Sbjct: 302 PIKATW 307
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 44/327 (13%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295
R T + + P + V GSK G+I WN +D+ I G I+G+
Sbjct: 122 RATSLAWHP-THPSTVAVGSKGGDIMLWNF-GIKDKPTFIKGIGAG-GSITGLKFNPLNT 178
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEGQG--- 347
++ + S +G RL D + + + SS+ + +S V T G+ G
Sbjct: 179 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT---GDNVGNVI 235
Query: 348 -----GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402
G +W++R +H+ ++ + NP +AT+S D T IWDLR +
Sbjct: 236 LLNMDGKELWNLR---------MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV-R 285
Query: 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRW 461
K + L H+ V++A FSP G+ L TT I ++S ++ +I H ++ +
Sbjct: 286 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 345
Query: 462 ISSFRAIWGWDDSCVFIGNMT------------RTVEVISPAQRRSVATLQSPYISAIPC 509
++ +A W + + +G RT++V + + L P S I
Sbjct: 346 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 405
Query: 510 RFHAHPHQVGTLAGATGGGQVYVWTSD 536
+P +G + G + +W+ +
Sbjct: 406 LNEFNP--MGDTLASAMGYHILIWSQE 430
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 133/325 (40%), Gaps = 44/325 (13%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295
R T + + P + V GSK G+I WN +D+ I G I+G+
Sbjct: 121 RATSLAWHP-THPSTVAVGSKGGDIMLWNF-GIKDKPTFIKGIGAG-GSITGLKFNPLNT 177
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEGQG--- 347
++ + S +G RL D + + + SS+ + +S V T G+ G
Sbjct: 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT---GDNVGNVI 234
Query: 348 -----GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402
G +W++R +H+ ++ + NP +AT+S D T IWDLR +
Sbjct: 235 LLNMDGKELWNLR---------MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV-R 284
Query: 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRW 461
K + L H+ V++A FSP G+ L TT I ++S ++ +I H ++ +
Sbjct: 285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344
Query: 462 ISSFRAIWGWDDSCVFIGNMT------------RTVEVISPAQRRSVATLQSPYISAIPC 509
++ +A W + + +G RT++V + + L P S I
Sbjct: 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404
Query: 510 RFHAHPHQVGTLAGATGGGQVYVWT 534
+P +G + G + +W+
Sbjct: 405 LNEFNP--MGDTLASAMGYHILIWS 427
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 133/325 (40%), Gaps = 44/325 (13%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295
R T + + P + V GSK G+I WN +D+ I G I+G+
Sbjct: 121 RATSLAWHP-THPSTVAVGSKGGDIMLWNF-GIKDKPTFIKGIGAG-GSITGLKFNPLNT 177
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEGQG--- 347
++ + S +G RL D + + + SS+ + +S V T G+ G
Sbjct: 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT---GDNVGNVI 234
Query: 348 -----GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402
G +W++R +H+ ++ + NP +AT+S D T IWDLR +
Sbjct: 235 LLNMDGKELWNLR---------MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV-R 284
Query: 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRW 461
K + L H+ V++A FSP G+ L TT I ++S ++ +I H ++ +
Sbjct: 285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344
Query: 462 ISSFRAIWGWDDSCVFIGNMT------------RTVEVISPAQRRSVATLQSPYISAIPC 509
++ +A W + + +G RT++V + + L P S I
Sbjct: 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404
Query: 510 RFHAHPHQVGTLAGATGGGQVYVWT 534
+P +G + G + +W+
Sbjct: 405 LNEFNP--MGDTLASAMGYHILIWS 427
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSRKSATEWLL---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
L IWD RS ++ L H A +N + FNP + I+AT S D T +WDLR++ K
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 310
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
+ SHK + ++SP + LA++ D + +W
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLY-FGEGQGGLNIWDVRSRKSATEWLL 365
+RL +KE + L ++S + LS ++ L+ G I D ++ +
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG----- 227
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP- 424
H A + + ++ + ++ + + D IWD RS T KP + V +H V+ F+P
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPY 286
Query: 425 SGSSLATTSFDDTIGIWSGVNFE 447
S LAT S D T+ +W N +
Sbjct: 287 SEFILATGSADKTVALWDLRNLK 309
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 319 LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNP 377
LV + V LS P + L G + +WD+R+ K + H+ I + ++P
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 378 RNPNIMATSSTDGTACIWDLRSMATDK 404
N I+A+S TD +WDL + ++
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEEQ 356
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-------MKVLSHKRAVH 418
HE +N + P+NP+I+AT + ++D KP+P +++ H++ +
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPA-KPDPSGECNPDLRLRGHQKEGY 183
Query: 419 S-AYFSPSGSSLATTSFDDTIGIW 441
++ S L + S D T+ +W
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLW 207
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 16/136 (11%)
Query: 276 YLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL--VYSSEYAVFSLSQQ 333
+L H ++ + Y + T D + L D L S + +F +
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 334 PNNVNTLYFGEGQGGLNIWDVR----------SRKSATEWLL----HEARINTIDFNPRN 379
P+N L LN+WD+ + E L H A+I+ +NP
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 380 PNIMATSSTDGTACIW 395
P ++ + S D IW
Sbjct: 389 PWVICSVSEDNIXQIW 404
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 278 FRTHLGPISGIVTQQYCLSK----IFTSCYDGLIRLMDAE-KEVFDLVYSSEYAVFSLSQ 332
T P S + + C S + T D LIR+ D E +++ ++ E ++SL
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 173
Query: 333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392
P+ + L G G + IWD+R+ + + L E + T+ +P + +A S D
Sbjct: 174 FPSG-DKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 393 CIWDLRS---MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT 449
+WD + + E HK +V+S F+ G S+ + S D ++ +W+ N N
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Query: 450 S 450
S
Sbjct: 292 S 292
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSRKSATEWLL---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
L IWD RS ++ L H A +N + FNP + I+AT S D T +WDLR++ K
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 310
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
+ SHK + ++SP + LA++ D + +W
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLY-FGEGQGGLNIWDVRSRKSATEWLL 365
+RL +KE + L ++S + LS ++ L+ G I D ++ +
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG----- 227
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP- 424
H A + + ++ + ++ + + D IWD RS T KP + V +H V+ F+P
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPY 286
Query: 425 SGSSLATTSFDDTIGIWSGVNFE 447
S LAT S D T+ +W N +
Sbjct: 287 SEFILATGSADKTVALWDLRNLK 309
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 319 LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNP 377
LV + V LS P + L G + +WD+R+ K + H+ I + ++P
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 378 RNPNIMATSSTDGTACIWDLRSMATDK 404
N I+A+S TD +WDL + ++
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEEQ 356
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-------MKVLSHKRAVH 418
HE +N + P+NP+I+AT + ++D KP+P +++ H++ +
Sbjct: 125 HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPA-KPDPSGECNPDLRLRGHQKEGY 183
Query: 419 S-AYFSPSGSSLATTSFDDTIGIW 441
++ S L + S D T+ +W
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLW 207
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 16/138 (11%)
Query: 276 YLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL--VYSSEYAVFSLSQQ 333
+L H ++ + Y + T D + L D L S + +F +
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 334 PNNVNTLYFGEGQGGLNIWDVR----------SRKSATEWLL----HEARINTIDFNPRN 379
P+N L LN+WD+ + E L H A+I+ +NP
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 380 PNIMATSSTDGTACIWDL 397
P ++ + S D IW +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
L IWD RS K + H A +N + FNP + I+AT S D T +WDLR++ K
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 308
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
+ SHK + +SP + LA++ D + +W
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 328 FSLSQQPNNVNTLYFGEGQGGLNIWDV-------RSRKSATEWLLHEARINTIDFNPRNP 380
+ LS PN L + +WD+ + + T + H A + + ++ +
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIG 439
++ + + D IWD RS T KP V +H V+ F+P S LAT S D T+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPS-HSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 440 IWSGVNFE 447
+W N +
Sbjct: 300 LWDLRNLK 307
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMAT 385
V LS P + L G + +WD+R+ K + H+ I + ++P N I+A+
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 386 SSTDGTACIWDLRSMATDK-PE 406
S TD +WDL + ++ PE
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPE 357
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-------MKVLSHKRAVH 418
HE +N + P+NP I+AT + ++D + KP+P +++ H++ +
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPS-KPDPSGECNPDLRLRGHQKEGY 181
Query: 419 SAYFSPSGSS-LATTSFDDTIGIW 441
++P+ S L + S D TI +W
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLW 205
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVR----------SRKSATEWLL----HEARINT 372
+F + P+N L LN+WD+ + E L H A+I+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379
Query: 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
+NP P ++ + S D +W + + +P
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDP 414
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
L IWD R+ K + H A +N + FNP + I+AT S D T +WDLR++ K
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 316
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
+ SHK + +SP + LA++ D + +W
Sbjct: 317 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 328 FSLSQQPNNVNTLYFGEGQGGLNIWDV-------RSRKSATEWLLHEARINTIDFNPRNP 380
+ LS PN L + +WD+ R + + H A + + ++ +
Sbjct: 189 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 248
Query: 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIG 439
++ + + D IWD R+ T KP V +H V+ F+P S LAT S D T+
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 440 IWSGVNFE 447
+W N +
Sbjct: 308 LWDLRNLK 315
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMAT 385
V LS P + L G + +WD+R+ K + H+ I + ++P N I+A+
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 386 SSTDGTACIWDLRSMATDK 404
S TD +WDL + ++
Sbjct: 344 SGTDRRLHVWDLSKIGEEQ 362
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-------MKVLSHKRAVH 418
HE +N + P+N ++AT + ++D + KPEP +++ H++ +
Sbjct: 131 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPS-KPEPSGECQPDLRLRGHQKEGY 189
Query: 419 SAYFSPS-GSSLATTSFDDTIGIW 441
++P+ L + S D TI +W
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLW 213
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVR----------SRKSATEWLL----HEARINT 372
+F + P+N L L++WD+ + E L H A+I+
Sbjct: 328 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 387
Query: 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
+NP P I+ + S D +W + + EP
Sbjct: 388 FSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 422
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
L IWD R+ K + H A +N + FNP + I+AT S D T +WDLR++ K
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 314
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
+ SHK + +SP + LA++ D + +W
Sbjct: 315 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 328 FSLSQQPNNVNTLYFGEGQGGLNIWDV-------RSRKSATEWLLHEARINTIDFNPRNP 380
+ LS PN L + +WD+ R + + H A + + ++ +
Sbjct: 187 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 246
Query: 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIG 439
++ + + D IWD R+ T KP V +H V+ F+P S LAT S D T+
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 440 IWSGVNFE 447
+W N +
Sbjct: 306 LWDLRNLK 313
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMAT 385
V LS P + L G + +WD+R+ K + H+ I + ++P N I+A+
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 386 SSTDGTACIWDLRSMATDK 404
S TD +WDL + ++
Sbjct: 342 SGTDRRLHVWDLSKIGEEQ 360
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-------MKVLSHKRAVH 418
HE +N + P+N ++AT + ++D + KPEP +++ H++ +
Sbjct: 129 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPS-KPEPSGECQPDLRLRGHQKEGY 187
Query: 419 SAYFSPS-GSSLATTSFDDTIGIW 441
++P+ L + S D TI +W
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLW 211
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVR----------SRKSATEWLL----HEARINT 372
+F + P+N L L++WD+ + E L H A+I+
Sbjct: 326 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 385
Query: 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
+NP P I+ + S D +W + + EP
Sbjct: 386 FSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 420
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
L IWD R+ K + H A +N + FNP + I+AT S D T +WDLR++ K
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 312
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
+ SHK + +SP + LA++ D + +W
Sbjct: 313 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 328 FSLSQQPNNVNTLYFGEGQGGLNIWDV-------RSRKSATEWLLHEARINTIDFNPRNP 380
+ LS PN L + +WD+ R + + H A + + ++ +
Sbjct: 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 244
Query: 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIG 439
++ + + D IWD R+ T KP V +H V+ F+P S LAT S D T+
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 440 IWSGVNFE 447
+W N +
Sbjct: 304 LWDLRNLK 311
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMAT 385
V LS P + L G + +WD+R+ K + H+ I + ++P N I+A+
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 386 SSTDGTACIWDLRSMATDK 404
S TD +WDL + ++
Sbjct: 340 SGTDRRLHVWDLSKIGEEQ 358
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-------MKVLSHKRAVH 418
HE +N + P+N ++AT + ++D + KPEP +++ H++ +
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPS-KPEPSGECQPDLRLRGHQKEGY 185
Query: 419 SAYFSPS-GSSLATTSFDDTIGIW 441
++P+ L + S D TI +W
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLW 209
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVR----------SRKSATEWLL----HEARINT 372
+F + P+N L L++WD+ + E L H A+I+
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383
Query: 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
+NP P I+ + S D +W + + EP
Sbjct: 384 FSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 418
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 43 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 157
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIW 179
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
Q
Sbjct: 276 QKLQ 279
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIHHNNQTGRWISSFRAIWG 470
H +AV S FSP+G LA++S D I IW + FE T +G + W
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISDVAWS 77
Query: 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 518
D + + + +T+++ + + + TL+ C F+ + +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 43 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 157
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIW 179
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
Q
Sbjct: 276 QKLQ 279
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIHHNNQTGRWISSFRAIWG 470
H +AV S FSP+G LA++S D I IW + FE T +G + W
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISDVAWS 77
Query: 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 518
D + + + +T+++ + + + TL+ C F+ + +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 46 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIW 182
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 116 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 173
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 224
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 278
Query: 489 SPAQ 492
Q
Sbjct: 279 QKLQ 282
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 404 KPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIH 453
KP P+K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---- 66
Query: 454 HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 513
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 67 ---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 514 HPHQV 518
+ +
Sbjct: 124 QSNLI 128
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357
+ +S D LI++ A F+ S S ++ N L L IWDV S
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV 417
K H + +FNP++ N++ + S D + IWD+++ K P +H V
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPV 174
Query: 418 HSAYFSPSGSSLATTSFDDTIGIW 441
+ +F+ GS + ++S+D IW
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 132 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 189
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 240
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 294
Query: 489 SPAQ 492
Q
Sbjct: 295 QKLQ 298
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 399 SMATDKPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FEN 448
S KP P+K + H +AV S FSP+G LA++S D I IW + FE
Sbjct: 22 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 81
Query: 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 508
T +G + W D + + + +T+++ + + + TL+
Sbjct: 82 T-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 134
Query: 509 CRFHAHPHQV 518
C F+ + +
Sbjct: 135 CNFNPQSNLI 144
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 36 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 95
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 96 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 150
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 151 VHFNRDGSLIVSSSYDGLCRIW 172
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 106 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 163
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 164 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 214
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 268
Query: 489 SPAQ 492
Q
Sbjct: 269 QKLQ 272
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 404 KPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIH 453
KP P+K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 1 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---- 56
Query: 454 HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 513
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 57 ---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 113
Query: 514 HPHQV 518
+ +
Sbjct: 114 QSNLI 118
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 39 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 98
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 99 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 153
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 154 VHFNRDGSLIVSSSYDGLCRIW 175
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 109 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 166
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 167 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 217
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 271
Query: 489 SPAQ 492
Q
Sbjct: 272 QKLQ 275
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIHHNNQTGRWISSFRAIWG 470
H +AV S FSP+G LA++S D I IW + FE T +G + W
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISDVAWS 73
Query: 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 518
D + + + +T+++ + + + TL+ C F+ + +
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 46 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIW 182
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 116 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 173
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 224
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 278
Query: 489 SPAQ 492
Q
Sbjct: 279 QKLQ 282
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 399 SMATDKPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FEN 448
S KP P+K + H +AV S FSP+G LA++S D I IW + FE
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 65
Query: 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 508
T +G + W D + + + +T+++ + + + TL+
Sbjct: 66 T-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 509 CRFHAHPHQV 518
C F+ + +
Sbjct: 119 CNFNPQSNLI 128
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 40 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 154
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIW 176
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 110 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 167
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 218
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 272
Query: 489 SPAQ 492
Q
Sbjct: 273 QKLQ 276
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 404 KPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIH 453
KP P+K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 5 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---- 60
Query: 454 HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 513
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 61 ---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 514 HPHQV 518
+ +
Sbjct: 118 QSNLI 122
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 57 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 116
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 117 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 171
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 172 VHFNRDGSLIVSSSYDGLCRIW 193
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 127 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 184
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 185 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 235
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 289
Query: 489 SPAQ 492
Q
Sbjct: 290 QKLQ 293
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 404 KPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIH 453
KP P+K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 22 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---- 77
Query: 454 HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 513
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 78 ---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 134
Query: 514 HPHQV 518
+ +
Sbjct: 135 QSNLI 139
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 41 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 100
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 101 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 155
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 156 VHFNRDGSLIVSSSYDGLCRIW 177
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 111 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 168
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 169 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 219
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 273
Query: 489 SPAQ 492
Q
Sbjct: 274 QKLQ 277
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 404 KPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIH 453
KP P+K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 6 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---- 61
Query: 454 HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 513
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 62 ---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 118
Query: 514 HPHQV 518
+ +
Sbjct: 119 QSNLI 123
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 46 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIW 182
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 116 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 173
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 224
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 278
Query: 489 SPAQ 492
Q
Sbjct: 279 QKLQ 282
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 399 SMATDKPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FEN 448
S KP P+K + H +AV S FSP+G LA++S D I IW + FE
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 65
Query: 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 508
T +G + W D + + + +T+++ + + + TL+
Sbjct: 66 T-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 509 CRFHAHPHQV 518
C F+ + +
Sbjct: 119 CNFNPQSNLI 128
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 45 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 104
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 105 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 159
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 160 VHFNRDGSLIVSSSYDGLCRIW 181
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 115 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 172
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 173 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 223
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 277
Query: 489 SPAQ 492
Q
Sbjct: 278 QKLQ 281
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 397 LRSMATDKPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--F 446
+ S KP P+K + H +AV S FSP+G LA++S D I IW + F
Sbjct: 3 MGSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 62
Query: 447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISA 506
E T +G + W D + + + +T+++ + + + TL+
Sbjct: 63 EKT-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Query: 507 IPCRFHAHPHQV 518
C F+ + +
Sbjct: 116 FCCNFNPQSNLI 127
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 304 DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW 363
D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS 423
H + +FNP++ N++ + S D + IWD+++ K P +H V + +F+
Sbjct: 107 KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFN 161
Query: 424 PSGSSLATTSFDDTIGIW 441
GS + ++S+D IW
Sbjct: 162 RDGSLIVSSSYDGLCRIW 179
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
Q
Sbjct: 276 QKLQ 279
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIHHNNQTGRWISSFRAIWG 470
H +AV S FSP+G LA +S D I IW + FE T +G + W
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT-------ISGHKLGISDVAWS 77
Query: 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 518
D + + + +T+++ + + + TL+ C F+ + +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357
+ +S D LI++ A F+ S S ++ N L L IWDV S
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV 417
K H + +FNP++ N++ + S D + IWD+++ K P +H V
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPV 176
Query: 418 HSAYFSPSGSSLATTSFDDTIGIW 441
+ +F+ GS + ++S+D IW
Sbjct: 177 SAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 134 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 191
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 242
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 243 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 296
Query: 489 SPAQ 492
Q
Sbjct: 297 QKLQ 300
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 399 SMATDKPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FEN 448
S KP P+K + H +AV S FSP+G LA++S D I IW + FE
Sbjct: 24 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 83
Query: 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 508
T +G + W D + + + +T+++ + + + TL+
Sbjct: 84 T-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 136
Query: 509 CRFHAHPHQV 518
C F+ + +
Sbjct: 137 CNFNPQSNLI 146
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 40 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 154
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIW 176
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ K H ++ + FN R+ +++ +S
Sbjct: 110 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 167
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 218
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 272
Query: 489 SPAQ 492
Q
Sbjct: 273 QKLQ 276
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 404 KPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTSMIH 453
KP P+K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 5 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---- 60
Query: 454 HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 513
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 61 ---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 514 HPHQV 518
+ +
Sbjct: 118 QSNLI 122
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 43 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLP----AHSDPVSA 157
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIW 179
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ H ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+T+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNMVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
Q
Sbjct: 276 QKLQ 279
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 399 SMATDKPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FEN 448
S KP P+K + H +AV S FSP+G LA++S D I IW + FE
Sbjct: 3 SATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 508
T +G + W D + + + +T+++ + + + TL+
Sbjct: 63 T-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 115
Query: 509 CRFHAHPHQV 518
C F+ + +
Sbjct: 116 CNFNPQSNLI 125
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
+S D LI++ A F+ S S ++ N L L IWDV S K
Sbjct: 43 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + +FNP++ N++ + S D + IWD+++ K P +H V +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLP----AHSDPVSA 157
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
+F+ GS + ++S+D IW
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIW 179
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
VF + P + N + G + IWDV++ H ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
S DG IWD L+++ D P+ + FSP+G + + D+ + +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNDLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
W S T H N + G+WI S G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNMVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
Q
Sbjct: 276 QKLQ 279
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 399 SMATDKPEPMK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FEN 448
S KP P+K + H +AV S FSP+G LA++S D I IW + FE
Sbjct: 3 SATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 508
T +G + W D + + + +T+++ + + + TL+
Sbjct: 63 T-------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 115
Query: 509 CRFHAHPHQV 518
C F+ + +
Sbjct: 116 CNFNPQSNLI 125
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST 388
+ + PN + + G G L+IWDVR L HEA + + F+P NP + T S
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSE 301
Query: 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA 430
DG+ WD +TD PE + H+ S + S S S+ A
Sbjct: 302 DGSLWHWD---ASTDVPEKSSLF-HQGGRSSTFLSHSISNQA 339
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 44/256 (17%)
Query: 235 GRITQMKFLPCSDVRMVVAGSKLGNITFW-------NLDSQQDEDNGIYLFRTHLGPISG 287
G + ++F D +VA S G +T + L Q Y H GP S
Sbjct: 94 GDVMDLQFF---DQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHY----HTGPGSP 146
Query: 288 IVTQQYCLS------KIFTSCYDGLIRLMDAEKE----VFDLVYSSEYAVFSLSQQPN-- 335
+ C +I T DG I L A+ + D SS + + P
Sbjct: 147 SYSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEIL 206
Query: 336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLL----HEARINTIDFNPRNPNIMATSSTDGT 391
VN++ G L IWD R + + +L ++ +D +P +++AT DG
Sbjct: 207 TVNSI------GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGM 260
Query: 392 ACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNF--E 447
IWD+R P+ +L +H+ + +F PS L T S D ++ W E
Sbjct: 261 LSIWDVRQGTM----PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPE 316
Query: 448 NTSMIHHNNQTGRWIS 463
+S+ H ++ ++S
Sbjct: 317 KSSLFHQGGRSSTFLS 332
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
V SLS P+ G +WDVR + HE+ IN I F P N N AT
Sbjct: 198 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 255
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
S D T ++DLR+ + + SH + S FS SG L D +W
Sbjct: 256 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
+ + ++ H+N+ TG W SF IW
Sbjct: 311 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 350
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
V SLS P+ G +WDVR + HE+ IN I F P N N AT
Sbjct: 187 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 244
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
S D T ++DLR+ + + SH + S FS SG L D +W
Sbjct: 245 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
+ + ++ H+N+ TG W SF IW
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
V SLS P+ G +WDVR + HE+ IN I F P N N AT
Sbjct: 187 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 244
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
S D T ++DLR+ + + SH + S FS SG L D +W
Sbjct: 245 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
+ + ++ H+N+ TG W SF IW
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
V SLS P+ G +WDVR + HE+ IN I F P N N AT
Sbjct: 187 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 244
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
S D T ++DLR+ + + SH + S FS SG L D +W
Sbjct: 245 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
+ + ++ H+N+ TG W SF IW
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
V SLS P+ G +WDVR + HE+ IN I F P N N AT
Sbjct: 187 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 244
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
S D T ++DLR+ + + SH + S FS SG L D +W
Sbjct: 245 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
+ + ++ H+N+ TG W SF IW
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 339
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 16/222 (7%)
Query: 221 SLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT 280
+LT + + ++ + + F P + + V G + +NL SQ D D + + R
Sbjct: 95 ALTSQKTHAIKLHCPWVMECAFAP--NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV 152
Query: 281 HLGPISGIVTQQYC---LSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA------VFSLS 331
G + QY +++ T D L D ++ SE+ V SLS
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 332 QQPNNVNTLYFGEGQGGLNIWDVR-SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390
N N G + +WD+R + ++ + HE IN++ F P + T S DG
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDG 271
Query: 391 TACIWDLRS---MATDKPEPMKVLSHKRAVHSAYFSPSGSSL 429
T ++D+R+ + EP + + V S FS SG L
Sbjct: 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-----HEARINTIDFNPRNPNIMATSST 388
P+ L G G +WDV + + + + H A + ++ N N N+ + S
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226
Query: 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT 437
D T +WDLR + H+ ++S F P G T S D T
Sbjct: 227 DTTVRLWDLRITSR---AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 24/233 (10%)
Query: 219 IGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF 278
+G +K + ++ M + C D R +V+ S+ G + W+ ++++ + +
Sbjct: 49 LGQFVMKTRRTLKGHGNKVLCMDW--CKDKRRIVSSSQDGKVIVWD-SFTTNKEHAVTM- 104
Query: 279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVN 338
P + ++ Y S +C GL FD + S++ N ++
Sbjct: 105 -----PCTWVMACAYAPSGCAIAC-GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS 158
Query: 339 TLYF---------GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP-RNPNIMATSST 388
F G G +WDV S + + H A + +D P N +
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
D A +WD+RS + +H+ V+S + PSG + A+ S D T ++
Sbjct: 219 DKKAMVWDMRSGQCVQA----FETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 297 KIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDV 354
+I T+ DG L D E ++ + V L P+ NT G +WD+
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 355 RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414
RS + + HE+ +N++ + P + + A+ S D T ++DLR+ + + S +
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRA-----DREVAIYSKE 281
Query: 415 RAVHSAY---FSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQ 457
+ A FS SG L D TI +W + S++ H N+
Sbjct: 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 328
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS-CYDGLIRLMD--AEKEVFDL 319
W++ S Q + F TH ++ + + Y F S D RL D A++EV
Sbjct: 225 WDMRSGQ----CVQAFETHESDVNSV--RYYPSGDAFASGSDDATCRLYDLRADREV--A 276
Query: 320 VYSSEYAVFSLSQQPNNVN--TLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP 377
+YS E +F S +++ L+ G +N+WDV + HE R++T+ +P
Sbjct: 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP 336
Query: 378 RNPNIMATSSTDGTACIW 395
+ + S D T +W
Sbjct: 337 -DGTAFCSGSWDHTLRVW 353
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 28/250 (11%)
Query: 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT---- 280
K ++ RI G I + P M+ GS G I ++L++ + Y +
Sbjct: 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSD-GVIVLYDLENSSRQ--SYYTCKAVCSI 90
Query: 281 -------HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQ 333
H + + + +S +D +++ D V++ E V+S
Sbjct: 91 GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS 150
Query: 334 PNNVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391
P + G G + + D++S + H I + ++PR I+AT+S D
Sbjct: 151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 392 ACIWDLRS-----MATDKPEPMKV-------LSHKRAVHSAYFSPSGSSLATTSFDDTIG 439
+WD+R + D+ K +H V+ F+ G L T D+ +
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 440 IWSGVNFENT 449
+W+ N ENT
Sbjct: 271 LWNSSNGENT 280
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDF-NPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
+ IWD + K + H ++N F N N ++AT S D +WDL K
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECR 743
Query: 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
+ H +V+ FSP LA+ S D T+ +W
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG--LNIWD 353
S I T D +++ D+ Y + N N L G L +WD
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 354 VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399
+ ++ H +N F+P + ++A+ S DGT +WD+RS
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRS 781
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
H + I DF+P + ++ + + +W++ S + + H VH FSP
Sbjct: 846 HHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDS----RLKVADCRGHLSWVHGVMFSPD 900
Query: 426 GSSLATTSFDDTIGIW 441
GSS T S D TI +W
Sbjct: 901 GSSFLTASDDQTIRVW 916
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 109/271 (40%), Gaps = 39/271 (14%)
Query: 203 KGVVKTEKIEVGSCVDI-----GSLTLKPENI--ARIMPGRITQMKFLPCSDVRMVVAGS 255
K V K I + +D+ ++ L +NI +++ G+ Q+ +LP + V
Sbjct: 919 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 978
Query: 256 KLGNITFWNLDSQQDEDNGIYL--------FRTHLGPISGIVTQQYCLS--KIFTSCYDG 305
L + F DED I + F + +G + Q+ + +S D
Sbjct: 979 HLEYVAF------GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1032
Query: 306 LIRLMDAEKEVFDLVYSSEYAV--FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW 363
+I++ + + + + + + V F L Q ++ + G + +W+V + + ++
Sbjct: 1033 VIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF----DGTVKVWNVITGRIERDF 1088
Query: 364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYF 422
H+ + + + + +++S D TA IW D P+ L H V + F
Sbjct: 1089 TCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF-----DLLSPLHELKGHNGCVRCSAF 1142
Query: 423 SPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453
S G LAT + I IW N + ++H
Sbjct: 1143 SLDGILLATGDDNGEIRIW---NVSDGQLLH 1170
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDF-NPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
+ IWD + K + H ++N F N N ++AT S D +WDL K
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECR 736
Query: 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
+ H +V+ FSP LA+ S D T+ +W
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG--LNIWD 353
S I T D +++ D+ Y + N N L G L +WD
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 354 VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399
+ ++ H +N F+P + ++A+ S DGT +WD+RS
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRS 774
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
H + I DF+P + ++ + + +W++ S + + H VH FSP
Sbjct: 839 HHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDS----RLKVADCRGHLSWVHGVMFSPD 893
Query: 426 GSSLATTSFDDTIGIW 441
GSS T S D TI +W
Sbjct: 894 GSSFLTASDDQTIRVW 909
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 109/271 (40%), Gaps = 39/271 (14%)
Query: 203 KGVVKTEKIEVGSCVDI-----GSLTLKPENI--ARIMPGRITQMKFLPCSDVRMVVAGS 255
K V K I + +D+ ++ L +NI +++ G+ Q+ +LP + V
Sbjct: 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971
Query: 256 KLGNITFWNLDSQQDEDNGIYL--------FRTHLGPISGIVTQQYCLS--KIFTSCYDG 305
L + F DED I + F + +G + Q+ + +S D
Sbjct: 972 HLEYVAF------GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1025
Query: 306 LIRLMDAEKEVFDLVYSSEYAV--FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW 363
+I++ + + + + + + V F L Q ++ + G + +W+V + + ++
Sbjct: 1026 VIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF----DGTVKVWNVITGRIERDF 1081
Query: 364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYF 422
H+ + + + + +++S D TA IW D P+ L H V + F
Sbjct: 1082 TCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF-----DLLSPLHELKGHNGCVRCSAF 1135
Query: 423 SPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453
S G LAT + I IW N + ++H
Sbjct: 1136 SLDGILLATGDDNGEIRIW---NVSDGQLLH 1163
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 14/185 (7%)
Query: 252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DGLIRLM 310
V+GSK I W+L Q + +R H ++ + + +F SC D I L
Sbjct: 143 VSGSKDICIKVWDLAQQV----VLSSYRAHAAQVTCVAASPH-KDSVFLSCSEDNRILLW 197
Query: 311 D--AEKEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE 367
D K + S+ Y SL+ P FG+ G +++ D +S +H
Sbjct: 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS 257
Query: 368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS 427
+ + F+P + +A+ S D + + D + E + +H+ V A +SP
Sbjct: 258 QCVTGLVFSPHSVPFLASLSEDCSLAVLD-----SSLSELFRSQAHRDFVRDATWSPLNH 312
Query: 428 SLATT 432
SL TT
Sbjct: 313 SLLTT 317
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 364 LLHEAR-INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS----HKRAVH 418
L +AR +N++DF P P + + S D T I++ P K S H + VH
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------GPPFKFKSTFGEHTKFVH 194
Query: 419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN--QTGRWISSFRAIWGWDDSCV 476
S ++P GS A+T D TI +++GV+ T + ++ S F W D + +
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 477 FIGNMTRTVEV 487
+ +T+++
Sbjct: 255 ASASADKTIKI 265
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSP 424
H+ + + ++P N +A++S D T CIW D E + L H+ V S ++P
Sbjct: 60 HQRTVRKVAWSPCG-NYLASASFDATTCIW---KKNQDDFECVTTLEGHENEVKSVAWAP 115
Query: 425 SGSSLATTSFDDTIGIW 441
SG+ LAT S D ++ +W
Sbjct: 116 SGNLLATCSRDKSVWVW 132
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSP 424
HE + ++ + P N++AT S D + +W++ D+ E + VL SH + V + P
Sbjct: 104 HENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDE--EDEYECVSVLNSHTQDVKHVVWHP 160
Query: 425 SGSSLATTSFDDTIGI 440
S LA+ S+DDT+ +
Sbjct: 161 SQELLASASYDDTVKL 176
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIW 395
H +N + +NP+ P ++A+ S DG W
Sbjct: 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
H + + ++P ++A++S D T + R D + H+ V S F PS
Sbjct: 149 HTQDVKHVVWHPSQ-ELLASASYDDTVKL--YREEEDDWVCCATLEGHESTVWSLAFDPS 205
Query: 426 GSSLATTSFDDTIGIW 441
G LA+ S D T+ IW
Sbjct: 206 GQRLASCSDDRTVRIW 221
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 365 LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAY 421
L++ +I + DF+ I+AT STD L S+ D + VL +HK+A+ S
Sbjct: 12 LYKEKIWSFDFSQ---GILATGSTDRKI---KLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 422 FSPSGSSLATTSFDDTIGIWS 442
+ P S LA SFD T+ IW+
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWA 86
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSP 424
HE + + ++ + +AT S D + IW+ + ++ E + VL H + V + P
Sbjct: 106 HENEVKGVAWS-NDGYYLATCSRDKSVWIWETDE-SGEEYECISVLQEHSQDVKHVIWHP 163
Query: 425 SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR-WISSF 465
S + LA++S+DDT+ IW + + + N G W S F
Sbjct: 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIW--DLRSMATDKPEPMKVLSHKRAVHSAYFS 423
H + I DF+P+N ++ + + +W D RS D H VH FS
Sbjct: 845 HHSTIQYCDFSPQN-HLAVVALSQYCVELWNTDSRSKVAD------CRGHLSWVHGVMFS 897
Query: 424 PSGSSLATTSFDDTIGIW 441
P GSS T+S D TI +W
Sbjct: 898 PDGSSFLTSSDDQTIRLW 915
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDF-NPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
+ IW+ + + + H ++N F N + ++AT S+D +WDL K
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ----KECR 742
Query: 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 443
+ H +V+ FSP LA+ S D T+ +W
Sbjct: 743 NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 347 GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE 406
G + +W++ + +++ H+ + + D + + +++S D TA IW D
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDIS-HDATKFSSTSADKTAKIWSF-----DLLL 1124
Query: 407 PMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447
P+ L H V + FS + LAT + I IW+ N E
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGE 1166
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308
+ VV+GS+ + W++++ Q +G ++ + QY ++ + YD +++
Sbjct: 210 KRVVSGSRDATLRVWDIETGQ-------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 262
Query: 309 LMDAEKEVF--------DLVYSSEY-----------------------AVFSLSQQPNNV 337
+ D E E + VYS ++ + +L+ +
Sbjct: 263 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 322
Query: 338 -------NTLYFGEGQGGLNIWDVRSRKSATEWL---LHEARINTIDFNPRNPNIMATSS 387
N L G + IWD+++ + H++ + + FN N + TSS
Sbjct: 323 SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSS 379
Query: 388 TDGTACIWDLRS 399
DGT +WDL++
Sbjct: 380 DDGTVKLWDLKT 391
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
H + + + F+P ++M ++S D T +WD + ++ + H +V F S
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFDHS 161
Query: 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ 457
G LA+ S D TI +W FE +H ++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDH 193
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLR 398
L +WD ++++ HE + ++DF+ P ++ T S D T +W+ R
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTVKVWECR 410
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408
+ +WD + H + I F+ + ++A+ S D T +WD + E +
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGF-----ECI 185
Query: 409 KVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
+ + H V S P+G + + S D TI +W
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 340 LYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399
L G + +WDV + + H+ + + F+ I++ + D T +WD ++
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKN 369
Query: 400 MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
MK L +H+ V S F + + T S D T+ +W
Sbjct: 370 KRC-----MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 94/213 (44%), Gaps = 18/213 (8%)
Query: 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIY-----LFRTHLGPISGI-VTQQYCLSKIFT 300
D ++++GS+ + W L ++E NG + H +S + ++Q+ C + +
Sbjct: 38 DSPVLISGSRDKTVMIWKL--YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA--IS 93
Query: 301 SCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV--RSR 357
S +D +RL D + + V+S++ P+N L G + + +W++ +
Sbjct: 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG-AEREIKLWNILGECK 152
Query: 358 KSATEWLLHEARINTIDFNP--RNPNIMATSSTDGTACIWD--LRSMATDKPEPMKVLSH 413
S+ E H ++ + ++P ++ N + + + WD L+ T+ +H
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH 212
Query: 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 446
+ V+ SP+G +AT D + IW +N
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 305 GLIRLMDA--EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362
G IRL+ + + + + Y+ + S + P L +G + I + + +
Sbjct: 50 GEIRLLQSYVDADADENFYTCAWTYDSNTSHP----LLAVAGSRGIIRIINPITMQCIKH 105
Query: 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KVLSHKRAVHSA 420
++ H IN + F+PR+PN++ + S D +W+++ TD + V H+ V SA
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ---TDTLVAIFGGVEGHRDEVLSA 162
Query: 421 YFSPSGSSLATTSFDDTIGIW 441
+ G + + D ++ +W
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLW 183
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 305 GLIRLMDA--EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362
G IRL+ + + + + Y+ + S + P L +G + I + + +
Sbjct: 55 GEIRLLQSYVDADADENFYTCAWTYDSNTSHP----LLAVAGSRGIIRIINPITMQCIKH 110
Query: 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KVLSHKRAVHSA 420
++ H IN + F+PR+PN++ + S D +W+++ TD + V H+ V SA
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ---TDTLVAIFGGVEGHRDEVLSA 167
Query: 421 YFSPSGSSLATTSFDDTIGIW 441
+ G + + D ++ +W
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLW 188
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 305 GLIRLMDA--EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362
G IRL+ + + + + Y+ + S + P L +G + I + + +
Sbjct: 91 GEIRLLQSYVDADADENFYTCAWTYDSNTSHP----LLAVAGSRGIIRIINPITMQCIKH 146
Query: 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KVLSHKRAVHSA 420
++ H IN + F+PR+PN++ + S D +W+++ TD + V H+ V SA
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ---TDTLVAIFGGVEGHRDEVLSA 203
Query: 421 YFSPSGSSLATTSFDDTIGIW 441
+ G + + D ++ +W
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLW 224
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 305 GLIRLMDA--EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362
G IRL+ + + + + Y+ + S + P L +G + I + + +
Sbjct: 54 GEIRLLQSYVDADADENFYTCAWTYDSNTSHP----LLAVAGSRGIIRIINPITMQCIKH 109
Query: 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KVLSHKRAVHSA 420
++ H IN + F+PR+PN++ + S D +W+++ TD + V H+ V SA
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ---TDTLVAIFGGVEGHRDEVLSA 166
Query: 421 YFSPSGSSLATTSFDDTIGIW 441
+ G + + D ++ +W
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLW 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 305 GLIRLMDA--EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362
G IRL+ + + + + Y+ + S + P L +G + I + + +
Sbjct: 54 GEIRLLQSYVDADADENFYTCAWTYDSNTSHP----LLAVAGSRGIIRIINPITMQCIKH 109
Query: 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KVLSHKRAVHSA 420
++ H IN + F+PR+PN++ + S D +W+++ TD + V H+ V SA
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ---TDTLVAIFGGVEGHRDEVLSA 166
Query: 421 YFSPSGSSLATTSFDDTIGIW 441
+ G + + D ++ +W
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLW 187
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA--YFS 423
HE + + FNP++P+ A+ D T +W S+ P +R V+ Y
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 424 PSGSSLATTSFDDTIGIW 441
P + T S D TI IW
Sbjct: 196 PDKPYMITASDDLTIKIW 213
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV-RSRKSATEWLLHEARINTIDFNPR-NPN 381
E+ V ++ P + +T G + +W + +S + T E +N +D+ P +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
M T+S D T IWD ++ K + H V A F P+ + + S D T+ IW
Sbjct: 200 YMITASDDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 442 SGVNFE 447
+ ++
Sbjct: 256 NSSTYK 261
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA--YFS 423
HE + + FNP++P+ A+ D T +W S+ P +R V+ Y
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 424 PSGSSLATTSFDDTIGIW 441
P + T S D TI IW
Sbjct: 196 PDKPYMITASDDLTIKIW 213
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV-RSRKSATEWLLHEARINTIDFNPR-NPN 381
E+ V ++ P + +T G + +W + +S + T E +N +D+ P +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
M T+S D T IWD ++ K + H V A F P+ + + S D T+ IW
Sbjct: 200 YMITASDDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 442 SGVNFE 447
+ ++
Sbjct: 256 NSSTYK 261
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA--YFS 423
HE + + FNP++P+ A+ D T +W S+ P +R V+ Y
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 424 PSGSSLATTSFDDTIGIW 441
P + T S D TI IW
Sbjct: 196 PDKPYMITASDDLTIKIW 213
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV-RSRKSATEWLLHEARINTIDFNPR-NPN 381
E+ V ++ P + +T G + +W + +S + T E +N +D+ P +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
M T+S D T IWD ++ K + H V A F P+ + + S D T+ IW
Sbjct: 200 YMITASDDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 442 SGVNFE 447
+ ++
Sbjct: 256 NSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA--YFS 423
HE + + FNP++P+ A+ D T +W S+ P +R V+ Y
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 424 PSGSSLATTSFDDTIGIW 441
P + T S D TI IW
Sbjct: 196 PDKPYMITASDDLTIKIW 213
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV-RSRKSATEWLLHEARINTIDFNPR-NPN 381
E+ V ++ P + +T G + +W + +S + T E +N +D+ P +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
M T+S D T IWD ++ K + H V A F P+ + + S D T+ IW
Sbjct: 200 YMITASDDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 442 SGVNFE 447
+ ++
Sbjct: 256 NSSTYK 261
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397
N L G + +WDV+ +K H AR+ ++ +N I+++ S G D+
Sbjct: 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDV 216
Query: 398 RSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
R + + H + V ++P G LA+ D+ + +W
Sbjct: 217 R---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 87/205 (42%), Gaps = 22/205 (10%)
Query: 240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC--LSK 297
+ F P D + + + S + WN + Q L +T G S + +
Sbjct: 350 VAFSP--DGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQT 399
Query: 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357
I ++ D ++L + ++ + +V+ ++ P++ T+ + +W+ R+
Sbjct: 400 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWN-RNG 457
Query: 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRA 416
+ H + + + F+P I A++S D T +W+ + ++ L+ H +
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNG------QLLQTLTGHSSS 510
Query: 417 VHSAYFSPSGSSLATTSFDDTIGIW 441
V FSP G ++A+ S D T+ +W
Sbjct: 511 VRGVAFSPDGQTIASASDDKTVKLW 535
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 87/203 (42%), Gaps = 18/203 (8%)
Query: 240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF 299
+ F P D + + + S + WN + Q + H ++G+ + + I
Sbjct: 227 VAFSP--DGQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSSVNGVAFRPDGQT-IA 278
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
++ D ++L + ++ + +V+ ++ P+ T+ + +W+ R+ +
Sbjct: 279 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN-RNGQH 336
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVH 418
H + + + F+P I A++S D T +W+ + ++ L+ H +V
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNG------QLLQTLTGHSSSVR 389
Query: 419 SAYFSPSGSSLATTSFDDTIGIW 441
FSP G ++A+ S D T+ +W
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLW 412
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSP 424
H + + + F+P I A++S D T +W+ + ++ L+ H +V FSP
Sbjct: 507 HSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNG------QLLQTLTGHSSSVWGVAFSP 559
Query: 425 SGSSLATTSFDDTIGIW 441
G ++A+ S D T+ +W
Sbjct: 560 DGQTIASASSDKTVKLW 576
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSP 424
H + + + F+P I A++S D T +W+ + ++ L+ H +V FSP
Sbjct: 56 HSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSP 108
Query: 425 SGSSLATTSFDDTIGIW 441
G ++A+ S D T+ +W
Sbjct: 109 DGQTIASASDDKTVKLW 125
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSP 424
H + + + F+P I A++S D T +W+ + ++ L+ H +V FSP
Sbjct: 179 HSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSP 231
Query: 425 SGSSLATTSFDDTIGIW 441
G ++A+ S D T+ +W
Sbjct: 232 DGQTIASASDDKTVKLW 248
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
E ++ +H +V FSP G ++A+ S D T+ +W
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW 43
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397
N L G + +WDV+ +K H AR+ ++ +N I+++ S G D+
Sbjct: 171 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDV 227
Query: 398 RSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
R + + H + V ++P G LA+ D+ + +W
Sbjct: 228 R---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSS-----EYAVFSLSQQPNN---VNTLYFGEGQG 347
S F S +D + A+KEV L Y+S + + + P N V T +
Sbjct: 186 SSNFASIWD-----LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240
Query: 348 GLNIWDVRSRKSATEWLL--HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
+ IWD+R+ + + L H+ I ++D+ ++ +++ +S D T +W+ P
Sbjct: 241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN--------P 292
Query: 406 EPMKVLSHKRA----VHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENT 449
E + LS A F+P L A SFD+ I + + N NT
Sbjct: 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
H + + T+ FN + N++A+ +G IWD+ T+ P L+ +++ S
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK-CTESPSNYTPLTPGQSMSS 164
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP--EPMKVL-SHKRAVHSAYF 422
H A + I + P N N++A+ S D T +W++ P EP+ L H + V +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 423 SPSGSS-LATTSFDDTIGIW---SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI 478
P+ + L + D+ I +W +G H + + + W D + +
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPD------TIYSVDWSRDGALICT 193
Query: 479 GNMTRTVEVISPAQRRSVATLQSPYISAIP 508
+ V VI P + VA P+ P
Sbjct: 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397
N L G + +WDV+ +K H AR+ ++ +N I+++ S G D+
Sbjct: 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDV 136
Query: 398 RSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
R + + H + V ++P G LA+ D+ + +W
Sbjct: 137 R---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 70/254 (27%)
Query: 223 TLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN-GI--YLFR 279
TLK N G +TQ+ P M+++ S+ I W L +DE N GI R
Sbjct: 10 TLKGHN------GWVTQIATTP-QFPDMILSASRDKTIIMWKL--TRDETNYGIPQRALR 60
Query: 280 THLGPISGIVTQ---QYCLSKIFTSCYDGLIRLMDAE------------KEVFDLVYSSE 324
H +S +V Q+ LS +DG +RL D K+V + +SS+
Sbjct: 61 GHSHFVSDVVISSDGQFALS----GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 325 -----------------------YAVFSLSQQ---------PNNVNTLYFGEGQGGL-NI 351
Y V S PN+ N + G L +
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 352 WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL 411
W++ + K T + H +NT+ +P + ++ A+ DG A +WDL ++ + + L
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDL-----NEGKHLYTL 230
Query: 412 SHKRAVHSAYFSPS 425
+++ FSP+
Sbjct: 231 DGGDIINALCFSPN 244
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444
+ S DGT +WDL + T + + + H + V S FS + + S D TI +W+ +
Sbjct: 80 SGSWDGTLRLWDLTTGTTTR----RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 135
Query: 445 NFENTSMIHHNNQTGRWISSFR 466
++ + W+S R
Sbjct: 136 GVCKYTV--QDESHSEWVSCVR 155
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP--EPMKVL-SHKRAVHSAYF 422
H A + I + P N N++A+ S D T +W++ P EP+ L H + V +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 423 SPSGSS-LATTSFDDTIGIW---SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI 478
P+ + L + D+ I +W +G H + + + W D + +
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD------TIYSVDWSRDGALICT 193
Query: 479 GNMTRTVEVISPAQRRSVATLQSPYISAIP 508
+ V VI P + VA P+ P
Sbjct: 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 70/254 (27%)
Query: 223 TLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN-GI--YLFR 279
TLK N G +TQ+ P M+++ S+ I W L +DE N GI R
Sbjct: 33 TLKGHN------GWVTQIATTP-QFPDMILSASRDKTIIMWKL--TRDETNYGIPQRALR 83
Query: 280 THLGPISGIVTQ---QYCLSKIFTSCYDGLIRLMDAE------------KEVFDLVYSSE 324
H +S +V Q+ LS +DG +RL D K+V + +SS+
Sbjct: 84 GHSHFVSDVVISSDGQFALS----GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 325 -----------------------YAVFSLSQQ---------PNNVNTLYFGEGQGGL-NI 351
Y V S PN+ N + G L +
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 352 WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL 411
W++ + K T + H +NT+ +P + ++ A+ DG A +WDL ++ + + L
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDL-----NEGKHLYTL 253
Query: 412 SHKRAVHSAYFSPS 425
+++ FSP+
Sbjct: 254 DGGDIINALCFSPN 267
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444
+ S DGT +WDL + T + + + H + V S FS + + S D TI +W+ +
Sbjct: 103 SGSWDGTLRLWDLTTGTTTR----RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Query: 445 NFENTSMIHHNNQTGRWISSFR 466
++ + W+S R
Sbjct: 159 GVCKYTV--QDESHSEWVSCVR 178
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 14/200 (7%)
Query: 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL 309
M+V SK +I W++ S D I L R +G + + + I ++ D I++
Sbjct: 225 MMVTCSKDRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 280
Query: 310 MDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR 369
+ F + + Q + + + G + +WD+ HE
Sbjct: 281 WNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEEL 338
Query: 370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV-HSAY---FSPS 425
+ I F+ + + + + DG +WDL + A D P L + V HS
Sbjct: 339 VRCIRFDNKR---IVSGAYDGKIKVWDLVA-ALDPRAPAGTLCLRTLVEHSGRVFRLQFD 394
Query: 426 GSSLATTSFDDTIGIWSGVN 445
+ ++S DDTI IW +N
Sbjct: 395 EFQIVSSSHDDTILIWDFLN 414
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 21/170 (12%)
Query: 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306
D + +V+ S I WN + + RT G GI QY + + D
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCE-------FVRTLNGHKRGIACLQYRDRLVVSGSSDNT 317
Query: 307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----RKSATE 362
IRL D E V + + N + G G + +WD+ + R A
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLVAALDPRAPAGT 375
Query: 363 WLL-----HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
L H R+ + F+ + +SS D T IWD + + EP
Sbjct: 376 LCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWDFLNDPAAQAEP 422
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP- 407
+ +WD+ + + H + +N + P I + DG +WD R KP+P
Sbjct: 163 VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-----KPKPA 217
Query: 408 --MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-----TSMIHHNNQTG 459
+ + S + P T + D G S VN +N TS +H N TG
Sbjct: 218 TRIDFCASDTIPTSVTWHPEKDD--TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 23/125 (18%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVR-------SRKSATEWLLHEARINTIDFNPR- 378
V S++ P+N + G L +W+V+ SR + T+W ++ + F+P
Sbjct: 112 VLSVAFSPDNRQIVSGGR-DNALRVWNVKGECMHTLSRGAHTDW------VSCVRFSPSL 164
Query: 379 NPNIMATSSTDGTACIWDLRS--MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD 436
+ ++ + D +WDL + + TD + H V S SP GS A++ D
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTD------LKGHTNYVTSVTVSPDGSLCASSDKDG 218
Query: 437 TIGIW 441
+W
Sbjct: 219 VARLW 223
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
H A ++ + + N N ++S D + +W+L++ K L H + V S FSP
Sbjct: 66 HSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQCQ----YKFLGHTKDVLSVAFSPD 120
Query: 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485
+ + D+ + +W+ V E + T W+S R D + G V
Sbjct: 121 NRQIVSGGRDNALRVWN-VKGECMHTLSRGAHT-DWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 486 EVISPAQRRSVATLQ--SPYISAI 507
+V A R V L+ + Y++++
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSV 202
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI 394
NN N L +W++++ + ++L H + ++ F+P N I+ + D +
Sbjct: 77 NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNALRV 135
Query: 395 WDLRSMATDKPEPMKVLS---HKRAVHSAYFSPS--GSSLATTSFDDTIGIW 441
W++ K E M LS H V FSPS + + +D+ + +W
Sbjct: 136 WNV------KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408
+ +WD+ + + T+ H + ++ +P + ++ A+S DG A +WDL K E +
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLT-----KGEAL 231
Query: 409 KVLSHKRAVHSAYFSPS 425
++ ++ FSP+
Sbjct: 232 SEMAAGAPINQICFSPN 248
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSP 424
H A + T+ + NI+ + S D T +WD+ M + + +LS H ++S +
Sbjct: 269 HMASVRTV---SGHGNIVVSGSYDNTLIVWDVAQM-----KCLYILSGHTDRIYSTIYDH 320
Query: 425 SGSSLATTSFDDTIGIWSGVNFENTSMIH 453
+ S D TI IW + EN +++
Sbjct: 321 ERKRCISASMDTTIRIW---DLENGELMY 346
>pdb|3QMQ|A Chain A, Crystal Structure Of E. Coli Lsrg
pdb|3QMQ|B Chain B, Crystal Structure Of E. Coli Lsrg
pdb|3QMQ|C Chain C, Crystal Structure Of E. Coli Lsrg
pdb|3QMQ|D Chain D, Crystal Structure Of E. Coli Lsrg
Length = 99
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 116 VETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENL 175
VE VD F+ V ++ H G ++EE N D P+V + E A KDE+
Sbjct: 9 VEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDPEVNSRFYIYE----AYKDED- 63
Query: 176 GFVIKDEFNGFKTC--KDEGLGVG 197
+KTC K E L G
Sbjct: 64 AVAFHKTTPHYKTCVAKLESLMTG 87
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT-EWLLHEAR-INTIDF 375
SL+ NN N +Y G G L WD+RS + E+L++E IN + F
Sbjct: 292 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF 340
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT-EWLLHEAR-INTIDF 375
SL+ NN N +Y G G L WD+RS + E+L++E IN + F
Sbjct: 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSP 424
H A + T+ + NI+ + S D T +WD+ + + + +LS H ++S +
Sbjct: 269 HXASVRTV---SGHGNIVVSGSYDNTLIVWDVA-----QXKCLYILSGHTDRIYSTIYDH 320
Query: 425 SGSSLATTSFDDTIGIWSGVNFE 447
+ S D TI IW N E
Sbjct: 321 ERKRCISASXDTTIRIWDLENGE 343
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA 467
+K+ H+R + ++ G L + S D + +W +N E + + TG
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--DGHTG-------T 76
Query: 468 IWGWDDSCV----FIGNMTRTVEVISPAQRRSVATLQSP 502
IW D C G+ ++++ + + VAT +SP
Sbjct: 77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP 115
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSP 424
H + ++ + PN++ ++S D T W L P++ H V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 425 SGSSLATTSFDDTIGIW 441
G+ + S+D T+ +W
Sbjct: 76 DGAYALSASWDKTLRLW 92
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSP 424
H + ++ + PN++ ++S D T W L P++ H V +
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 425 SGSSLATTSFDDTIGIW 441
G+ + S+D T+ +W
Sbjct: 70 DGAYALSASWDKTLRLW 86
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSP 424
H + ++ + PN++ ++S D T W L P++ H V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 425 SGSSLATTSFDDTIGIW 441
G+ + S+D T+ +W
Sbjct: 76 DGAYALSASWDKTLRLW 92
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSP 424
H + ++ + PN++ ++S D T W L P++ H V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 425 SGSSLATTSFDDTIGIW 441
G+ + S+D T+ +W
Sbjct: 76 DGAYALSASWDKTLRLW 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,534,450
Number of Sequences: 62578
Number of extensions: 616062
Number of successful extensions: 2146
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1758
Number of HSP's gapped (non-prelim): 253
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)